Citrus Sinensis ID: 020301

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKVI
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHcccccEEEEcccccccHHHHHHcccccccEEEEcccccccccHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccEEEEEcccHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHcccccccccccccccccccHHHHHHHccEEEEEccccHHHHccccHHHHHccccccEEEEccccccccHHHHHHHHHcccccccccccccccccccccccccccEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccccccEEEEEccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHccccEEEEEccccccHHHHHHcccccccEEEEEccccccEcHHHHHHcccEEEccccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccEccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHEEEEcccccccHHHHHccEEcccHHHHHHHccEEEEcccccccccccEcHHHHccccccEEEEEccccccEcHHHHHHHHHHccEEEEEEccccccccccccccccccEEEEcccccccEcc
Coil and Loop (DISEMBL)
makpvsievwnpngkyrvvstkpmpgtrWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAvgynnvdvnaankygiavgntpgvlTETTAELAASLSLAAARRIVEADEFMraglydgwlpnlfvgnllkgqtvgvigagrIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLkangeqpvtwkrASSMDEVLREADvislhpvldkttYHLINKERLATMKKEAILVncsrgpviDEVALVEHlkqnpmfrvgldvfedepymkpglsemknaIVVPHIASASKVI
Flexible Loop (DISEMBL)
makpvsievwnpngkyrvvstkpmpGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFlkangeqpvtwKRASSMDEVLREAdvislhpvldkttYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPglsemknaivvphiasaskvi
Low Complexity Region (SEG)
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVltettaelaaslslaaaRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKVI
Disordered region (IsUnstruct)
******IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGL***KNAIVVP*********
Disordered Region (DISOPRED)
*****************VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASA****
Disordered Region (DISEMBL)
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKVI
Disordered Region (DISPRO)
**KPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKVI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	328	2.2.26 [Sep-21-2011]
P13443	382	Glycerate dehydrogenase O	N/A	no	0.993	0.853	0.920	1e-174
Q9C9W5	386	Glycerate dehydrogenase H	yes	no	0.993	0.844	0.920	1e-172
B6YWH0	334	Glyoxylate reductase OS=T	yes	no	0.878	0.862	0.384	4e-47
A1RYE4	339	Glyoxylate reductase OS=T	yes	no	0.871	0.843	0.380	6e-46
Q8U3Y2	336	Glyoxylate reductase OS=P	yes	no	0.743	0.726	0.393	7e-45
B1L765	332	Glyoxylate reductase OS=K	yes	no	0.865	0.855	0.394	1e-44
Q9C4M5	331	Glyoxylate reductase OS=T	N/A	no	0.670	0.664	0.452	2e-44
Q9YAW4	335	Glyoxylate reductase OS=A	yes	no	0.673	0.659	0.420	3e-44
Q5JEZ2	333	Glyoxylate reductase OS=P	yes	no	0.829	0.816	0.383	7e-43
C5A1V0	334	Glyoxylate reductase OS=T	yes	no	0.878	0.862	0.380	2e-39

>sp|P13443|DHGY_CUCSA Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1

 Score =  611 bits (1576), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 300/326 (92%), Positives = 317/326 (97%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPV IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICT+KKTILSVEDI+ALIG
Sbjct: 1   MAKPVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAG YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG+FLKANGE PVTW+RASSMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGEFLKANGEAPVTWRRASSMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTT+HL+NKE L  MKK+AIL+NCSRGPVIDE ALV+HL+ NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTFHLVNKESLKAMKKDAILINCSRGPVIDEAALVDHLRDNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASK 326
           DEPYMKPGL++MKNAI+VPHIASASK
Sbjct: 301 DEPYMKPGLADMKNAIIVPHIASASK 326

Cucumis sativus (taxid: 3659)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 9

>sp|Q9C9W5|HPR1_ARATH Glycerate dehydrogenase HPR, peroxisomal OS=Arabidopsis thaliana GN=HPR PE=1 SV=1

 Score =  603 bits (1556), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 300/326 (92%), Positives = 317/326 (97%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEV+NPNGKYRVVSTKPMPGTRWINLL++Q CRVEIC  KKTILSVEDII LIG
Sbjct: 1   MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQGCRVEICHLKKTILSVEDIIDLIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALS+AGGKAFSNMAVGYNNVDV AANKYGIAVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMR GLY+GWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRGGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYGQFLKANGEQPVTWKRASSM+EVLREAD+I
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADLI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERLA MKKEAILVNCSRGPVIDE ALVEHLK+NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLAMMKKEAILVNCSRGPVIDEAALVEHLKENPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASK 326
           +EP+MKPGL++ KNAIVVPHIASASK
Sbjct: 301 EEPFMKPGLADTKNAIVVPHIASASK 326

Catalyzes the NADH-dependent reduction of hydroxypyruvate into glycerate in the photorespiratory core cycle. Mediates fatty acid beta-oxidation in germinating seeds when malate dehydrogenase is absent.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1

 Score =  188 bits (478), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 121/315 (38%), Positives = 182/315 (57%), Gaps = 27/315 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V+ T+ +P    I +L E    VE+   +  I S E ++  + D  D ++  L+E  
Sbjct: 2   KPKVLITRKIP-ENGIKMLREH-FEVEVWEDEHEI-SREVLLEKVRD-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +F A  R   K  +N AVGY+N+D+  A K G+ + NTP VLT  TA++A  L LA 
Sbjct: 58  DAEVFDAAPRL--KIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLAT 115

Query: 135 ARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           ARR++EAD+F+R+G +      W P +F+G  + G+T+G++G GRIG A AR   +GF M
Sbjct: 116 ARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARR-AKGFGM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++Y    +   +EK + A  +F+               +DE+L+E+D + L   L K T
Sbjct: 175 RILYNSRTRKPEVEKELGA--EFM--------------PLDELLKESDFVVLVVPLTKET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
           YH+IN+ERL  MK  AILVN +RG V+D  ALV+ L++  +   GLDVFE+EPY    L 
Sbjct: 219 YHMINEERLKLMKPTAILVNIARGKVVDTEALVKALREGWIAGAGLDVFEEEPYYHEELF 278

Query: 311 EMKNAIVVPHIASAS 325
            + N ++ PHI SA+
Sbjct: 279 SLDNVVLAPHIGSAT 293

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score =  184 bits (468), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 120/315 (38%), Positives = 177/315 (56%), Gaps = 29/315 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K  V    P PG      ++++ C V +   K    S E+++  I DK D ++  LT+  
Sbjct: 5   KVYVTRIIPEPGLS----MLKECCDVVVHESKDWPPSREELLRNIRDK-DALLCLLTDKI 59

Query: 75  -GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLA 133
             E + AA      K  S  +VG++++D+  A K GI V +TPGVLT+  AE    L LA
Sbjct: 60  DAEVMDAA---PNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILA 116

Query: 134 AARRIVEADEFMRAGLYDG-WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNL 192
             RRIVEAD+ +R G +D  W P    G  LKG+T+G++G GRIG A A+ +   F + +
Sbjct: 117 VTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKRL-SSFDVKI 175

Query: 193 IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252
           +YYD+ +   +E  +         N E        + +D +L ++D++S+H  L K TYH
Sbjct: 176 LYYDIERRWDVETVI--------PNME-------FTDLDTLLEKSDIVSIHVPLTKETYH 220

Query: 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LS 310
           LIN+ERL  MKK A L+N +RGPV+D  ALV+ LK+  +    LDVFE EP + P   L+
Sbjct: 221 LINEERLRKMKKTAYLINTARGPVVDTEALVKALKEGWIAGAALDVFEQEP-LPPNHPLT 279

Query: 311 EMKNAIVVPHIASAS 325
           +  N ++ PHIASA+
Sbjct: 280 KFDNVVLAPHIASAT 294

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1

 Score =  181 bits (459), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 105/267 (39%), Positives = 154/267 (57%), Gaps = 23/267 (8%)

Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTET 122
            D ++  L+E   + +F    R   +  +N AVGY+N+DV  A + GI V NTP VLT  
Sbjct: 46  VDALVTMLSERIDQEVFENAPRL--RIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTNA 103

Query: 123 TAELAASLSLAAARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGS 178
           TA+ A +L LA AR +V+ D+F+R+G +      W P  F+G  L G+T+G++G GRIG 
Sbjct: 104 TADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVGFGRIGQ 163

Query: 179 AYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238
           A AR   +GF M ++YY   + ++ EK + A                    ++EVL+E+D
Sbjct: 164 AIARR-AKGFNMRILYYSRTRKSQAEKELGA----------------EYRPLEEVLKESD 206

Query: 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298
            + L   L K T ++IN+ERL  MK  AILVN +RG V+D  AL++ LK+  +   GLDV
Sbjct: 207 FVILAVPLTKETMYMINEERLKLMKPTAILVNIARGKVVDTKALIKALKEGWIAGAGLDV 266

Query: 299 FEDEPYMKPGLSEMKNAIVVPHIASAS 325
           FE+EPY    L  + N ++ PHI SA+
Sbjct: 267 FEEEPYYNEELFSLDNVVLTPHIGSAT 293

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1

 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/317 (39%), Positives = 183/317 (57%), Gaps = 33/317 (10%)

Query: 15  KYRVVSTKPMP--GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTE 72
           K RV  T+ +P  G   I    E D   +     K +     II  + D CD ++  LT+
Sbjct: 2   KPRVFVTREIPERGLSKIEEHFELDLWKDEAPPSKKV-----IIERVKD-CDALVSLLTD 55

Query: 73  DWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSL 132
                +F A  +   +  +  AVGY+N+DV  A K GI V NTPGVLTETTA+ A +L +
Sbjct: 56  PIDAEVFEAAPKL--RIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLTETTADFAFALLM 113

Query: 133 AAARRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMN 191
           AAARR+VEAD ++R G +   W P + +G  + G+T+G++G GRIG+A AR   +GF M 
Sbjct: 114 AAARRVVEADRYVREGKWKVAWHPMMMLGYDVYGRTLGIVGMGRIGAAVARR-AKGFGMR 172

Query: 192 LIYYDLYQATRLEKFVTAYG-QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
           ++YYD   + R E F    G +++               ++++L E+D +SLH  L + T
Sbjct: 173 ILYYD---SIRREDFEKELGVEYV--------------PLEKLLEESDFVSLHVPLTEET 215

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-- 308
           YH+I +E+L  MK+ AILVN SRG V+D+ AL + LK+  +   GLDVFE EP + P   
Sbjct: 216 YHMIGEEQLRRMKRTAILVNTSRGKVVDQKALYKALKEGWIAGAGLDVFEQEP-IPPDDP 274

Query: 309 LSEMKNAIVVPHIASAS 325
           L +++N ++ PH ASAS
Sbjct: 275 LLKLENVVLAPHAASAS 291

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/243 (45%), Positives = 151/243 (62%), Gaps = 23/243 (9%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K  +  AVGY+N+D+  A K GI V NTPGVLT+ TA+LA +L LA ARRIVEAD F+R+
Sbjct: 69  KIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRS 128

Query: 148 GLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G +     GW P +F+G  LKG+T+G++G GRIG A A+   +GF M +IYY   +    
Sbjct: 129 GEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAKR-AKGFGMKIIYYSRTRKPEA 187

Query: 204 EKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262
           E+ + A Y  F                 + +L+E+D ISLH  L K TYH+I ++ L  M
Sbjct: 188 EEEIGAEYVDF-----------------ETLLKESDFISLHVPLTKETYHMIGEKELKLM 230

Query: 263 KKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322
           K  AIL+N SRG V+D  AL++ LK+  +   GLDVFE+EPY    L ++KN ++ PHI 
Sbjct: 231 KPNAILINTSRGAVVDTNALIKALKEGWIAGAGLDVFEEEPYYNEELFKLKNVVLAPHIG 290

Query: 323 SAS 325
           SA+
Sbjct: 291 SAT 293

Thermococcus litoralis (taxid: 2265)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=gyaR PE=3 SV=2

 Score =  179 bits (453), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 103/245 (42%), Positives = 148/245 (60%), Gaps = 24/245 (9%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           +  + MAVG++N+DV  A + GI V NTPGVLTE TAE   +L LAAARR+VEAD F+R 
Sbjct: 70  RIVAQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVRW 129

Query: 148 G----LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G    L  GW P + +G  L+G+T+G++G GRIGS  A +  + F M +IY+   +   +
Sbjct: 130 GEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEIG-KAFGMRIIYHSRSRKREI 188

Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
           EK + A                   S++++LRE+D++S+H  L   T HLI +  L  MK
Sbjct: 189 EKELGA----------------EYRSLEDLLRESDILSIHLPLTDETRHLIGESELKLMK 232

Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHI 321
           K AILVN  RG ++D  ALV+ L++  +    LDVFE+EP + P   L+  KN ++ PH 
Sbjct: 233 KTAILVNTGRGAIVDTGALVKALREGWIAAAALDVFEEEP-LNPNHPLTAFKNVVLAPHA 291

Query: 322 ASASK 326
           ASA++
Sbjct: 292 ASATR 296

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1

 Score =  174 bits (442), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 114/297 (38%), Positives = 173/297 (58%), Gaps = 25/297 (8%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
           ++++   VE+  +++ I   E ++  + D  D ++  L+E     +F A  R   +  +N
Sbjct: 18  MLKEHFEVEVWPEEREI-PREVLLKKVRD-VDALVTMLSERIDSEVFDAAPRL--RIVAN 73

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD- 151
            AVGY+N+DV  A + GI V NTP VLT+ TA+ A +L LA ARR++EAD F R+G +  
Sbjct: 74  YAVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKR 133

Query: 152 ---GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
               W P  F+G  + G+T+G++G GRIG A AR    GF M ++YY   +    EK + 
Sbjct: 134 RGIAWHPRWFLGYDVYGKTIGIVGFGRIGQAVARR-ARGFGMRILYYSRSRKPEAEKELG 192

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
           A  +F               S++++LRE+D + L   L K T ++IN+ERL  MKK AIL
Sbjct: 193 A--EF--------------RSLEDLLRESDFVVLAVPLTKETQYMINEERLRLMKKTAIL 236

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
           VN +RG V+D  AL++ LK+  +   GLDV+E+EPY    L  +KN ++ PHI SA+
Sbjct: 237 VNIARGKVVDTKALMKALKEGWIAGAGLDVYEEEPYYNEELFSLKNVVLAPHIGSAT 293

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|C5A1V0|GYAR_THEGJ Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1

 Score =  163 bits (412), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/315 (38%), Positives = 178/315 (56%), Gaps = 27/315 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V  T+ +P    I++L E    VE+  +++ I   E ++  + D  D ++  L+E  
Sbjct: 2   KPKVFITRAIP-ENGIDMLREH-FEVEVWPEEREI-PREVLLEKVRD-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +F    R   +  +N AVGY+NVDV  A + GI V NTP VLT  TA+ A +L LA 
Sbjct: 58  DGEVFDNAPRL--RIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLAT 115

Query: 135 ARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           ARR++EAD F R+G +      W P +F+G+ + G+T+G+IG GRIG A AR   +GF M
Sbjct: 116 ARRLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIGQAVARR-AKGFGM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++YY   +    E+ + A  +F                ++E+L+E+D + L   L K T
Sbjct: 175 RILYYSRTRKPEAEEELKA--EF--------------KPLEELLKESDFVVLAVPLTKET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
           YH+I +  L  MK  AILVN +RG V+D  AL++ LK+  +   GLDVFE+EPY    L 
Sbjct: 219 YHMIGERELKLMKPTAILVNIARGKVVDTEALIKALKEGWIAGAGLDVFEEEPYYNEELF 278

Query: 311 EMKNAIVVPHIASAS 325
            +KN I+ PHI SA+
Sbjct: 279 SLKNVILAPHIGSAT 293

Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) (taxid: 593117)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
255581842	386	hydroxypyruvate reductase, putative [Ric	0.993	0.844	0.969	1e-178
147805559	386	hypothetical protein VITISV_020147 [Viti	0.993	0.844	0.938	1e-177
225428049	386	PREDICTED: glycerate dehydrogenase [Viti	0.993	0.844	0.938	1e-177
118489484	386	unknown [Populus trichocarpa x Populus d	0.993	0.844	0.950	1e-177
224078341	386	predicted protein [Populus trichocarpa]	0.993	0.844	0.947	1e-177
13873334	386	hydroxypyruvate reductase [Bruguiera gym	0.993	0.844	0.944	1e-176
388493492	388	unknown [Lotus japonicus]	0.993	0.840	0.926	1e-174
388506608	386	unknown [Medicago truncatula]	0.993	0.844	0.914	1e-172
449454213	382	PREDICTED: glycerate dehydrogenase-like	0.993	0.853	0.920	1e-172
118723307	386	hydroxypyruvate reductase [Solenostemon	0.993	0.844	0.923	1e-172

>gi|255581842|ref|XP_002531721.1| hydroxypyruvate reductase, putative [Ricinus communis] gi|223528624|gb|EEF30641.1| hydroxypyruvate reductase, putative [Ricinus communis]

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 316/326 (96%), Positives = 321/326 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPV IEVWNPNGKYRVVSTK MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPVQIEVWNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQATRLEKFVTAYG FL+ANGEQPVTWKRASSMDEVLR ADVI
Sbjct: 181 ARMMVEGFKMNLIYFDLYQATRLEKFVTAYGAFLQANGEQPVTWKRASSMDEVLRVADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHLINKE LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLINKESLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASK 326
           DEPYMKPGL+EMKNAIVVPHIASASK
Sbjct: 301 DEPYMKPGLAEMKNAIVVPHIASASK 326

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805559|emb|CAN65023.1| hypothetical protein VITISV_020147 [Vitis vinifera]

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 306/326 (93%), Positives = 323/326 (99%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP GKYRVVSTKPMPGTRWI+LL++QDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPCGKYRVVSTKPMPGTRWIDLLVQQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALSRAGG+AFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSRAGGRAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLS+AAARRIVEADEFMRAGLYDGWLP+LFVGNLL+GQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSMAAARRIVEADEFMRAGLYDGWLPHLFVGNLLRGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA+GEQPVTWKRA+SMDEVLREAD+I
Sbjct: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKASGEQPVTWKRAASMDEVLREADLI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERL+ MKKEAIL+NCSRGPVIDEVALV HLK+NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLSMMKKEAILINCSRGPVIDEVALVAHLKENPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASK 326
           DEPYMKPGL+EMKNAIVVPHIASASK
Sbjct: 301 DEPYMKPGLAEMKNAIVVPHIASASK 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428049|ref|XP_002279281.1| PREDICTED: glycerate dehydrogenase [Vitis vinifera] gi|297744600|emb|CBI37862.3| unnamed protein product [Vitis vinifera]

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 306/326 (93%), Positives = 323/326 (99%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP GKYRVVSTKPMPGTRWI+LL++QDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPCGKYRVVSTKPMPGTRWIDLLVQQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALSRAGG+AFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSRAGGRAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLS+AAARRIVEADEFMRAGLYDGWLP+LFVGNLL+GQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSMAAARRIVEADEFMRAGLYDGWLPHLFVGNLLRGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA+GEQPVTWKRA+SMDEVLREAD+I
Sbjct: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKASGEQPVTWKRAASMDEVLREADLI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERL+ MKKEAIL+NCSRGPVIDEVALV HLK+NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLSMMKKEAILINCSRGPVIDEVALVAHLKENPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASK 326
           DEPYMKPGL+EMKNAIVVPHIASASK
Sbjct: 301 DEPYMKPGLAEMKNAIVVPHIASASK 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489484|gb|ABK96544.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 310/326 (95%), Positives = 324/326 (99%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKP+SIEV+NPNGKYRVVSTK MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPISIEVYNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK+G+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEAD+FMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADQFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYG+FLKANGEQPVTWKRA+SMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGEFLKANGEQPVTWKRAASMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHLINKE LATMKKEAILVNCSRGPV+DEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLINKESLATMKKEAILVNCSRGPVVDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASK 326
           DEPYMKPGL++MKNA+VVPHIASASK
Sbjct: 301 DEPYMKPGLADMKNAVVVPHIASASK 326

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078341|ref|XP_002305524.1| predicted protein [Populus trichocarpa] gi|222848488|gb|EEE86035.1| predicted protein [Populus trichocarpa]

 Score =  625 bits (1612), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 309/326 (94%), Positives = 324/326 (99%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKP+SIEV+NPNGKYRVVSTK MPGTRWINLLIEQDCRVEICTQ+KTILSVEDIIALIG
Sbjct: 1   MAKPISIEVYNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQQKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK+G+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEAD+FMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADQFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYG+FLKANGEQPVTWKRA+SMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGEFLKANGEQPVTWKRAASMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHLINKE LATMKKEAILVNCSRGPV+DEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLINKESLATMKKEAILVNCSRGPVVDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASK 326
           DEPYMKPGL++MKNA+VVPHIASASK
Sbjct: 301 DEPYMKPGLADMKNAVVVPHIASASK 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13873334|dbj|BAB44155.1| hydroxypyruvate reductase [Bruguiera gymnorhiza]

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 308/326 (94%), Positives = 324/326 (99%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP G+YRVVSTKPMPGTRWINLL++QDCR+EICT+KKTILSVEDIIAL+G
Sbjct: 1   MAKPVSIEVWNPRGRYRVVSTKPMPGTRWINLLVQQDCRLEICTEKKTILSVEDIIALMG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALS+AGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSKAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA++MDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAATMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHLINKE LA+MKKEA+LVNCSRGPVIDEVALVEHL++NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLINKESLASMKKEAVLVNCSRGPVIDEVALVEHLRRNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASK 326
           DEPYMKPGL++MKNAIVVPHIASASK
Sbjct: 301 DEPYMKPGLADMKNAIVVPHIASASK 326

Source: Bruguiera gymnorhiza

Species: Bruguiera gymnorhiza

Genus: Bruguiera

Family: Rhizophoraceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493492|gb|AFK34812.1| unknown [Lotus japonicus]

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 302/326 (92%), Positives = 320/326 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP+GKYRVVSTKPMPGTRWINLLI+QDCR+EICT+KKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPSGKYRVVSTKPMPGTRWINLLIQQDCRLEICTEKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           +KCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  EKCDGVIGQLTEDWGEELFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASL+LAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAY  FLKANGE PVTWKRASSMDEVL+EAD+I
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYAAFLKANGETPVTWKRASSMDEVLQEADII 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHL+NKERLA MKKEAILVNCSRGPVIDE ALVEHL+QNPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLVNKERLAKMKKEAILVNCSRGPVIDEAALVEHLRQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASK 326
           +EPYMKPGL+E+KNAIVVPHIASASK
Sbjct: 301 EEPYMKPGLAELKNAIVVPHIASASK 326

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506608|gb|AFK41370.1| unknown [Medicago truncatula]

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 298/326 (91%), Positives = 320/326 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSI+VWNPNGKYRVVSTK MPGTRWINLLI+QDCR+EICT+KKTILSVED IALIG
Sbjct: 1   MAKPVSIQVWNPNGKYRVVSTKSMPGTRWINLLIQQDCRLEICTEKKTILSVEDTIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ALS+AGGKAFSNMAVGYNNVDVNAANK+G+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEELFSALSKAGGKAFSNMAVGYNNVDVNAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASL+LAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG FLKANGE PVTWKRA+SMDEVL+EAD+I
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGAFLKANGETPVTWKRAASMDEVLQEADII 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHL+NKERLA MKKEAIL+NCSRGPVIDEVALVEHLK+NPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEVALVEHLKENPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASK 326
           DEPYMKPGL+E+KNA+VVPHIASASK
Sbjct: 301 DEPYMKPGLAELKNAVVVPHIASASK 326

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454213|ref|XP_004144850.1| PREDICTED: glycerate dehydrogenase-like [Cucumis sativus] gi|449508825|ref|XP_004163421.1| PREDICTED: glycerate dehydrogenase-like [Cucumis sativus] gi|118564|sp|P13443.1|DHGY_CUCSA RecName: Full=Glycerate dehydrogenase; Short=GDH; AltName: Full=NADH-dependent hydroxypyruvate reductase; Short=HPR gi|18264|emb|CAA41434.1| NADH-dependent hydroxypyruvate reductase [Cucumis sativus] gi|18275|emb|CAA32764.1| unnamed protein product [Cucumis sativus]

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 300/326 (92%), Positives = 317/326 (97%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPV IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICT+KKTILSVEDI+ALIG
Sbjct: 1   MAKPVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAG YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG+FLKANGE PVTW+RASSMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGEFLKANGEAPVTWRRASSMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTT+HL+NKE L  MKK+AIL+NCSRGPVIDE ALV+HL+ NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTFHLVNKESLKAMKKDAILINCSRGPVIDEAALVDHLRDNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASK 326
           DEPYMKPGL++MKNAI+VPHIASASK
Sbjct: 301 DEPYMKPGLADMKNAIIVPHIASASK 326

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118723307|gb|ABL10359.1| hydroxypyruvate reductase [Solenostemon scutellarioides]

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 301/326 (92%), Positives = 320/326 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKP+ +EV+NPNGKYRVVSTK MPGTRWINLL++QDCR+EICT+KKTILSVEDII+LIG
Sbjct: 1   MAKPLQVEVYNPNGKYRVVSTKSMPGTRWINLLVDQDCRLEICTEKKTILSVEDIISLIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           +KCDGVIGQLTEDWGE LF+ALSRAGG AFSNMAVGYNNVDV+AANK+G+AVGNTPGVLT
Sbjct: 61  NKCDGVIGQLTEDWGEKLFSALSRAGGTAFSNMAVGYNNVDVDAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYGQFL+ANGEQPVTWKRASSMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLQANGEQPVTWKRASSMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERLA MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLAKMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASK 326
           DEPYMKPGL +MKNAI+VPHIASASK
Sbjct: 301 DEPYMKPGLEKMKNAIIVPHIASASK 326

Source: Solenostemon scutellarioides

Species: Solenostemon scutellarioides

Genus: Solenostemon

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
TIGR_CMR|BA_1434	323	BA_1434 "D-isomer specific 2-h	0.484	0.492	0.337	7.3e-35
TIGR_CMR|CHY_2698	525	CHY_2698 "D-3-phosphoglycerate	0.384	0.24	0.384	1.8e-34
UNIPROTKB|Q0BWN7	328	gyaR "Glyoxylate reductase" [H	0.695	0.695	0.348	2e-33
UNIPROTKB|Q48MK5	324	PSPPH_1099 "D-isomer specific	0.667	0.675	0.357	2.9e-32
UNIPROTKB|Q4KI01	324	ghrB2 "Glyoxylate/hydroxypyruv	0.667	0.675	0.361	1.6e-31
TIGR_CMR|SPO_1570	330	SPO_1570 "D-isomer specific 2-	0.896	0.890	0.288	8.8e-31
TIGR_CMR|BA_5135	330	BA_5135 "D-isomer specific 2-h	0.871	0.866	0.289	1.3e-29
TIGR_CMR|SPO_0913	317	SPO_0913 "D-isomer specific 2-	0.530	0.548	0.297	1.5e-29
TIGR_CMR|SPO_0632	328	SPO_0632 "D-isomer specific 2-	0.698	0.698	0.337	1.6e-29
UNIPROTKB|P37666	324	ghrB "GhrB" [Escherichia coli	0.673	0.682	0.358	1.7e-27

TIGR_CMR|BA_1434 BA_1434 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 219 (82.2 bits), Expect = 7.3e-35, Sum P(2) = 7.3e-35
 Identities = 56/166 (33%), Positives = 86/166 (51%)

Query:    30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL-TEDWGETLFAALSRAGGK 88
             I L + +D  VE+   K+ ++S++++   + DK D ++  L T+   E + AA S    K
Sbjct:    13 IGLELLKDHDVEMY-DKEELISLDELTERVKDK-DALLSLLSTKVTKEVIDAAPSL---K 67

Query:    89 AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
               +N   GY+N+D   A + GIAV NTP V                 RRI E D   R  
Sbjct:    68 IVANYGAGYDNIDYTYAGEKGIAVTNTPKVSTEATAELTFALLLAAARRIPEGDTLCRTT 127

Query:   149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
              ++GW P  F+G  + G+T+G+IG G IG A A+   + F MN++Y
Sbjct:   128 GFNGWAPLFFLGREVHGKTIGIIGLGEIGKAVAKR-AKAFGMNILY 172

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|CHY_2698 CHY_2698 "D-3-phosphoglycerate dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 229 (85.7 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
 Identities = 50/130 (38%), Positives = 77/130 (59%)

Query:   200 ATRLEKFVT---AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
             A R++ F T    Y  F+     Q +      S++E+L+ +D++++H  L+  T +LIN+
Sbjct:   155 AKRVKAFETRVIGYDPFISEERAQ-MLGITLMSLEELLQNSDIVTMHLPLNNETRNLINR 213

Query:   257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAI 316
             ERL  MKK A ++NC+RG +IDE AL E LK   +    LDVF  EP  +  L E+ N I
Sbjct:   214 ERLKLMKKSAFIINCARGGIIDEEALYEALKAGEIAGAALDVFSKEPLTESPLFELPNVI 273

Query:   317 VVPHIASASK 326
             V PH+ +++K
Sbjct:   274 VTPHLGASTK 283

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0006564 "L-serine biosynthetic process" evidence=ISS

UNIPROTKB|Q0BWN7 gyaR "Glyoxylate reductase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 86/247 (34%), Positives = 130/247 (52%)

Query:    82 LSRAGG--KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIV 139
             ++RAG   +  +    G +N+DV +A + GI V NTPGV                 RR+ 
Sbjct:    65 MARAGDQLRLIAQFGAGVDNIDVASAVQRGITVTNTPGVLTDDTADVAMALILAVPRRMH 124

Query:   140 EADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199
             E  + M AG +DGW P   +G  L G+ +G+IG GRIG A AR     F M + Y++   
Sbjct:   125 EGVQIMEAGKFDGWTPTWMMGRRLSGKRLGIIGMGRIGQAVARR-ARAFGMQIHYHNRKP 183

Query:   200 -ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258
              ++R+E+ + A              W    S+D++L   D++S++      T+HLIN  R
Sbjct:   184 VSSRIEESLEA------------TYW---DSLDQMLARMDIVSINCPHTPATFHLINARR 228

Query:   259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVV 318
             L  MK EA ++N +RG VIDE AL   ++   +   GLDVFE EP + P L  + N +++
Sbjct:   229 LGLMKPEAYIINTARGEVIDEAALARAIRAGKIAGAGLDVFEREPAVNPELIGLPNVLLL 288

Query:   319 PHIASAS 325
             PH+ SA+
Sbjct:   289 PHMGSAT 295

GO:0046487 "glyoxylate metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

UNIPROTKB|Q48MK5 PSPPH_1099 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 84/235 (35%), Positives = 129/235 (54%)

Query:    91 SNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLY 150
             S+++VGY+N DV+  ++ GI + NTP V                 RR+ E D + +AG +
Sbjct:    71 SSISVGYDNYDVDYLSERGILLTNTPDVLTESTADLGFSLIMSSARRVAELDAYTKAGQW 130

Query:   151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
                +     G  + G+T+G++G G IG+A AR    GF M ++Y    + T LE+ + A 
Sbjct:   131 TRSIEPPHFGTDVHGKTLGIVGMGNIGAAIARRGRLGFNMPILYSGNSRKTELEQELGA- 189

Query:   211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
              QF               S+D++L EAD + L   L + T HLI +  L+ MK  AIL+N
Sbjct:   190 -QF--------------RSLDQLLAEADFVCLVVPLSEKTKHLIGRRELSLMKPGAILIN 234

Query:   271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
              +RGP++DE AL+E L+   +   GLDV+E EP  +  L ++KNA+ +PHI SA+
Sbjct:   235 IARGPIVDEPALIEALQNGTIRGAGLDVYEKEPLKESPLFQLKNAVTLPHIGSAT 289

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q4KI01 ghrB2 "Glyoxylate/hydroxypyruvate reductase B" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 85/235 (36%), Positives = 128/235 (54%)

Query:    91 SNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLY 150
             S+++VGY+N D+   N+ G+ + NTP V                 RR+ E D + +AG +
Sbjct:    71 SSISVGYDNYDLAYFNERGLMLTNTPDVLTESTADLAFALLMSSARRVAELDAWTKAGQW 130

Query:   151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
                +     G  + G+T+G++G G IG+A AR    GF M ++Y    +   LE+ + A 
Sbjct:   131 QASVGPALFGCDVHGKTLGIVGMGNIGAAIARRGRLGFGMPILYSGNSRKAALEQELGA- 189

Query:   211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
              QF               S++++L EAD + L   L + T HLI+   LA MK  AILVN
Sbjct:   190 -QF--------------RSLEQLLAEADFVCLVVPLSEKTKHLISHRELALMKPSAILVN 234

Query:   271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
              SRGPV+DE AL+E L++  +   GLDV+E EP  +  L ++KNA+ +PHI SA+
Sbjct:   235 ISRGPVVDEPALIEALQKGQIRGAGLDVYEKEPLAESPLFQLKNAVTLPHIGSAT 289

GO:0008873 "gluconate 2-dehydrogenase activity" evidence=ISS

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISS

GO:0019521 "D-gluconate metabolic process" evidence=ISS

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISS

TIGR_CMR|SPO_1570 SPO_1570 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 91/315 (28%), Positives = 150/315 (47%)

Query:    13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTE 72
             N K RV+ T+  P    +   + +    +       + S E   AL   + D ++  +T+
Sbjct:     8 NSKPRVLVTRRWPAA--VEAQLAERFDTQFNRTDTPLTSAEFRSALA--RFDAILPTVTD 63

Query:    73 DWG-ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXX 131
               G E L     +   +  +N  VGY+++D +A   +GI V NTP V             
Sbjct:    64 KLGAEALDVTAPQT--RLLANYGVGYSHIDSDAVRAHGITVSNTPDVLSECTADIAMTLM 121

Query:   132 XXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMN 191
                 RR  E +  +RAG + GW P   VG+ + G+ +G++G GRIG A A+    GF M 
Sbjct:   122 LMVARRAGEGERELRAGQWTGWRPTHLVGSKVSGKVLGIVGFGRIGQAMAQRAHHGFGMK 181

Query:   192 LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251
             ++  +  ++   +  +  YG              +  ++D +L + D +SLH        
Sbjct:   182 ILVQN--RSAVPQDVLDRYGA------------TQVETLDAMLPQCDFVSLHCPGGAANR 227

Query:   252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSE 311
             HLIN  RL  MK +A L+N +RG V+DE AL + L  + +    LDVF+ EP + P L +
Sbjct:   228 HLINSRRLDLMKPDAFLINTARGEVVDEHALAQALMFDCIGGAALDVFDGEPRIAPVLLD 287

Query:   312 MKNAIVVPHIASASK 326
               N +++PH+ SA++
Sbjct:   288 CDNLVMLPHLGSATR 302

GO:0008152 "metabolic process" evidence=ISS

GO:0050578 "(R)-2-hydroxyacid dehydrogenase activity" evidence=ISS

TIGR_CMR|BA_5135 BA_5135 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 91/314 (28%), Positives = 152/314 (48%)

Query:    15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
             K +V   +P+P   ++   + + C  E   Q + +   + ++  I DK DG++       
Sbjct:    12 KPKVYIAEPVP--TFVENYLSEHCDYEKWEQNEKVPR-DVLLEKIQDK-DGLLN-FGSAI 66

Query:    75 GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXX 134
              E L  A      K  SN++VGY+N D+ A  K+ +   NTP V                
Sbjct:    67 NEELLEAAPNL--KVVSNISVGYDNFDLQAMAKHNVIGTNTPYVLDDTVADLVFALMLSA 124

Query:   135 XRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
              RR+ E D +++ G ++  +     G  +   T+G+IG GRIG A A+    GF M+++Y
Sbjct:   125 GRRVCELDSYVKNGEWNAEIGKEHFGLDVHHSTIGIIGMGRIGEAVAKRAKFGFDMDVLY 184

Query:   195 YDLYQATRLE-KFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYH 252
             Y+  +    E KF   Y                   +  +L+++D ++ L P+ D+T YH
Sbjct:   185 YNRRRKEEAEQKFDATY-----------------CDLQTLLKQSDFIVLLTPLTDET-YH 226

Query:   253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSE 311
             LI ++  + MK+ AI +N SRG  +DE AL++ L +  +F  G+D F  EP  K   L  
Sbjct:   227 LIGEKEFSFMKETAIFINASRGKTVDEEALIDALTEKKIFAAGIDTFTQEPIQKDNPLLS 286

Query:   312 MKNAIVVPHIASAS 325
             ++N + +PHI SA+
Sbjct:   287 LQNVVTLPHIGSAT 300

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|SPO_0913 SPO_0913 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 210 (79.0 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
 Identities = 53/178 (29%), Positives = 84/178 (47%)

Query:    17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
             +++  +PM  T  +      +   EI T    +   E + AL   + D V+  L + +  
Sbjct:     2 KLLIARPM--TAAVEARARAEFETEIRTSTTPLSEAEMLRAL--REFDIVMPTLGDMFSA 57

Query:    77 TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXR 136
              +FA +     +  +N  VGYN++ V AA   G+AV NTPG                  R
Sbjct:    58 DVFAQVPEPRCRLLANFGVGYNHIAVAAARAAGVAVTNTPGAVTDATADIAMTLLLMTAR 117

Query:   137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
             R  E +  +R+G ++GW P   +G+ + G+ VG++G GRIG A AR    GF M + Y
Sbjct:   118 RAGEGERLVRSGAWEGWHPTQMLGHHVTGKHVGIVGLGRIGQAIARRCHFGFGMQVSY 175

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|SPO_0632 SPO_0632 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 83/246 (33%), Positives = 125/246 (50%)

Query:    82 LSRAGGKA--FSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIV 139
             L++AG +    +N   G +++DV  A + GI V NTPGV                 RRI 
Sbjct:    65 LAQAGERMRLIANYGAGVDHIDVATARQRGILVSNTPGVLTDDTADMTMALILAVTRRIP 124

Query:   140 EADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199
             E    M+   + GW P   +G  + G+ +G++G GRIG A AR     F M + Y++   
Sbjct:   125 EGLAVMQKNEWTGWAPTALLGGRVGGRRLGILGMGRIGQAVARR-ASAFGMQIHYHN--- 180

Query:   200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259
               RL   V      L+A      TW    S+D+++   DVIS++     +T+HL+N  RL
Sbjct:   181 RRRLRPEVE---DALEA------TWW--DSLDQMIARMDVISVNCPSTPSTFHLMNARRL 229

Query:   260 ATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVP 319
               MK   ++VN SRG VIDE AL   ++   +   GLDV+E    + P L E+ N +++P
Sbjct:   230 KLMKPTGVIVNTSRGEVIDENALTRMIRTGEIAGAGLDVYEHGTQVNPRLRELPNVVLLP 289

Query:   320 HIASAS 325
             H+ SA+
Sbjct:   290 HMGSAT 295

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|P37666 ghrB "GhrB" [Escherichia coli K-12 (taxid:83333)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 86/240 (35%), Positives = 122/240 (50%)

Query:    88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
             +A S ++VGY+N DV+A     I + +TP V                 RR+VE  E ++A
Sbjct:    68 RATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKA 127

Query:   148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
             G +   +   + G  +  +T+G++G GRIG A A+    GF M +    LY A R  K  
Sbjct:   128 GEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPI----LYNARRHHK-- 181

Query:   208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
              A  +F   N        R   +D +L+E+D + L   L   T+HL   E+ A MK  AI
Sbjct:   182 EAEERF---NA-------RYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAI 231

Query:   268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHIASAS 325
              +N  RGPV+DE AL+  L++  +   GLDVFE EP     P LS M N + VPHI SA+
Sbjct:   232 FINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLS-MANVVAVPHIGSAT 290

GO:0051287 "NAD binding" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046181 "ketogluconate catabolic process" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019521 "D-gluconate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008873 "gluconate 2-dehydrogenase activity" evidence=IEA;IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5JEZ2	GYAR_PYRKO	1, ., 1, ., 1, ., 2, 6	0.3838	0.8292	0.8168	yes	no
A1RYE4	GYAR_THEPD	1, ., 1, ., 1, ., 2, 6	0.3809	0.8719	0.8436	yes	no
C5A1V0	GYAR_THEGJ	1, ., 1, ., 1, ., 2, 6	0.3809	0.8780	0.8622	yes	no
Q9C9W5	HPR1_ARATH	1, ., 1, ., 1, ., 2, 9	0.9202	0.9939	0.8445	yes	no
B1L765	GYAR_KORCO	1, ., 1, ., 1, ., 2, 6	0.3943	0.8658	0.8554	yes	no
O32264	TKRA_BACSU	1, ., 1, ., 1, ., 2, 1, 5	0.3279	0.8689	0.8769	yes	no
O58320	GYAR_PYRHO	1, ., 1, ., 1, ., 2, 6	0.3804	0.8292	0.8143	yes	no
P13443	DHGY_CUCSA	1, ., 1, ., 1, ., 2, 9	0.9202	0.9939	0.8534	N/A	no
B6YWH0	GYAR_THEON	1, ., 1, ., 1, ., 2, 6	0.3841	0.8780	0.8622	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.983
4th Layer	1.1.1.29	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036132001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (418 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00022240001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (401 aa)	•			•			•		0.664
	GSVIVG00034383001	SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (144 aa)				•					0.442
	GSVIVG00025097001	SubName- Full=Putative uncharacterized protein (Chromosome chr4 scaffold_32, whole genome shotg [...] (221 aa)				•					0.416
	GSVIVG00015518001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (99 aa)				•					0.412
	GSVIVG00011932001	SubName- Full=Chromosome undetermined scaffold_2569, whole genome shotgun sequence; (393 aa)				•					0.412
	GSVIVG00015393001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (270 aa)				•					0.411
	GSVIVG00037644001	SubName- Full=Chromosome chr9 scaffold_90, whole genome shotgun sequence; (395 aa)				•					0.408
	GSVIVG00036212001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (397 aa)				•					0.406
	GSVIVG00026129001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (273 aa)				•					0.402
	GSVIVG00024835001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (329 aa)				•					0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	328
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	0.0
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	1e-123
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	4e-80
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	1e-78
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	5e-76
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	2e-75
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	1e-72
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	2e-72
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	4e-67
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	1e-63
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	4e-62
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	8e-62
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	2e-60
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	2e-59
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	2e-58
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	2e-57
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	7e-55
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	2e-54
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	5e-54
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	6e-54
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	8e-54
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	1e-52
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	1e-51
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	8e-50
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	1e-49
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	1e-49
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	8e-49
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	9e-49
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	2e-47
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	3e-47
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	3e-45
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	8e-41
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	9e-41
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	7e-39
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	9e-39
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	3e-37
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	4e-34
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	1e-32
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	8e-32
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	1e-30
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	2e-30
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	4e-29
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	2e-28
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	3e-28
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	2e-27
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	6e-26
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	1e-25
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	5e-25
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	3e-24
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	1e-23
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	2e-22
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	4e-18
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	5e-17
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	1e-15
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	8e-15
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	1e-14
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	6e-14
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	5e-13
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	3e-12
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	1e-06
cd01620	317	cd01620, Ala_dh_like, Alanine dehydrogenase and re	2e-05

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score =  695 bits (1796), Expect = 0.0
 Identities = 308/326 (94%), Positives = 322/326 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEV+NPNGKYRVVSTKPMPGTRWINLL++QDCRVEICT+KKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALS+AGGKAFSNMAVGYNNVDV AANKYGIAVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLY+GWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYGQFLKANGEQPVTWKRASSM+EVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHLINKERLA MKKEA+LVN SRGPVIDEVALVEHLK NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASK 326
           DEPYMKPGL++MKNA+VVPHIASASK
Sbjct: 301 DEPYMKPGLADMKNAVVVPHIASASK 326

Length = 386

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  355 bits (914), Expect = e-123
 Identities = 125/311 (40%), Positives = 176/311 (56%), Gaps = 24/311 (7%)

Query: 16  YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWG 75
            +V+ T+ +P    + LL  +   VE+   +   L  E+++       DG++  LT+   
Sbjct: 1   PKVLVTRRLPE-EALALL-REGFEVEVW-DEDRPLPREELLEAAKG-ADGLLCTLTDKID 56

Query: 76  ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAA 135
             L  A      K  +N +VGY+++DV+AA   GI V NTP VLT+ TA+LA +L LAAA
Sbjct: 57  AELLDAAPPL--KVIANYSVGYDHIDVDAAKARGIPVTNTPDVLTDATADLAFALLLAAA 114

Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           RR+VE D F+RAG + GW P L +G  L G+T+G++G GRIG A AR    GF M ++Y+
Sbjct: 115 RRVVEGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAK-GFGMKILYH 173

Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255
           +  +    E+ + A                   S+DE+L E+D +SLH  L   T HLIN
Sbjct: 174 NRSRKPEAEEELGAR----------------YVSLDELLAESDFVSLHCPLTPETRHLIN 217

Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKN 314
            ERLA MK  AIL+N +RG V+DE ALVE LK   +   GLDVFE EP      L  + N
Sbjct: 218 AERLALMKPTAILINTARGGVVDEDALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPN 277

Query: 315 AIVVPHIASAS 325
            +++PHI SA+
Sbjct: 278 VVLLPHIGSAT 288

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  245 bits (629), Expect = 4e-80
 Identities = 122/297 (41%), Positives = 163/297 (54%), Gaps = 30/297 (10%)

Query: 32  LLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI-GQLTEDWGETLFAALSRAGGKAF 90
           LL      V +    +  L+ E++I L+ D  DGVI G   +   E + AA  R   K  
Sbjct: 19  LLEAAGFEVVLNPLGR-PLTEEELIELLKD-ADGVIAG--LDPITEEVLAAAPRL--KVI 72

Query: 91  SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
           S   VGY+N+D+ AA K GI V NTPG  + + AEL   L LA AR+I +AD  +RAG  
Sbjct: 73  SRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLMLALARQIPQADREVRAG-- 130

Query: 151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
            GW     VG  L G+T+G+IG GRIG A AR +  GF M ++ YD Y            
Sbjct: 131 -GWDR--PVGTELYGKTLGIIGLGRIGKAVARRLS-GFGMKVLAYDPYPDE--------- 177

Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
            +F K +G + V      S++E+L+E+D ISLH  L   T HLIN   LA MK  AIL+N
Sbjct: 178 -EFAKEHGVEFV------SLEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILIN 230

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASK 326
            +RG ++DE AL E LK   +    LDVFE+EP      L E+ N I+ PHI +++K
Sbjct: 231 TARGGLVDEEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGASTK 287

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  242 bits (620), Expect = 1e-78
 Identities = 109/299 (36%), Positives = 160/299 (53%), Gaps = 34/299 (11%)

Query: 34  IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTE-------DWGETLFAALSRAG 86
           +E++  V        ++S E+++  I D  D +I  L+        D  + L        
Sbjct: 17  LEENFEV-TYYDGLGLISKEELLERIAD-YDALITPLSTPVDKEIIDAAKNL-------- 66

Query: 87  GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
            K  +N   G++N+DV+ A + GI V NTP V TE TAEL   L LA ARRI E D  MR
Sbjct: 67  -KIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALARRIAEGDRLMR 125

Query: 147 AGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206
            G + GW P  F+G+ L G+T+G+IG GRIG A AR   + F M ++YY+ ++ +   + 
Sbjct: 126 RGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARR-AKAFGMKILYYNRHRLSEETE- 183

Query: 207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA 266
               G           T+     +DE+L+E+D +SLH      T+HLI+      MK  A
Sbjct: 184 -KELG----------ATYV---DLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTA 229

Query: 267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
            L+N +RGP++DE ALV+ LK   +    LDVFE EP + P L ++ N I+ PHI +A+
Sbjct: 230 YLINAARGPLVDEKALVDALKTGEIAGAALDVFEFEPEVSPELKKLDNVILTPHIGNAT 288

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  235 bits (603), Expect = 5e-76
 Identities = 115/318 (36%), Positives = 165/318 (51%), Gaps = 29/318 (9%)

Query: 14  GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTED 73
            K  V+ST+ +P    +   +++   VE        L+ +  +A      D VI  + + 
Sbjct: 1   MKIVVLSTRKLP--PEVLERLKEKFEVERYEDD---LTPDTELAERLKDADAVITFVNDR 55

Query: 74  WGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLA 133
               +   L     K  +  + GY+NVD+ AA + GI V N PG  TE  AE A +L LA
Sbjct: 56  IDAEVLEKLPGL--KLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILA 113

Query: 134 AARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNL 192
            ARRI E D  +R G +     P+  +G  L+G+T+G+IG GRIG A AR + +GF M +
Sbjct: 114 LARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRL-KGFGMKV 172

Query: 193 IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252
           +YYD       EK      +++               +DE+L E+D+ISLH  L   T H
Sbjct: 173 LYYDRSPNPEAEK--ELGARYV--------------DLDELLAESDIISLHCPLTPETRH 216

Query: 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP----G 308
           LIN E LA MK  AILVN +RG ++DE AL++ LK   +   GLDVFE+EP +       
Sbjct: 217 LINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLR 276

Query: 309 LSEMKNAIVVPHIASASK 326
           L    N ++ PHIASA++
Sbjct: 277 LDNFPNVVLTPHIASATE 294

Length = 324

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  233 bits (597), Expect = 2e-75
 Identities = 110/306 (35%), Positives = 148/306 (48%), Gaps = 52/306 (16%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAA---- 81
           + LL E    V++       LS E+++A+I D  D +I     ++T +    +  A    
Sbjct: 13  LELLREAGIEVDV----APGLSEEELLAIIAD-ADALIVRSATKVTAE----VIEAAPRL 63

Query: 82  --LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIV 139
             + RAG        VG +N+DV AA   GI V N PG  T + AE   +L LA AR I 
Sbjct: 64  KVIGRAG--------VGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLALARNIP 115

Query: 140 EADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY- 198
           +AD  +RAG    W    F+G  L+G+T+G++G GRIG   AR     F M ++ YD Y 
Sbjct: 116 QADASLRAG---KWDRKKFMGVELRGKTLGIVGLGRIGREVARRAR-AFGMKVLAYDPYI 171

Query: 199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258
            A R                          S+DE+L EAD ISLH  L   T  LIN E 
Sbjct: 172 SAERAAAGGV-----------------ELVSLDELLAEADFISLHTPLTPETRGLINAEE 214

Query: 259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAI 316
           LA MK  AIL+N +RG ++DE AL + LK   +    LDVFE EP       L  + N I
Sbjct: 215 LAKMKPGAILINTARGGIVDEAALADALKSGKIAGAALDVFEQEP-PPADSPLLGLPNVI 273

Query: 317 VVPHIA 322
           + PH+ 
Sbjct: 274 LTPHLG 279

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  226 bits (579), Expect = 1e-72
 Identities = 101/280 (36%), Positives = 141/280 (50%), Gaps = 23/280 (8%)

Query: 48  TILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK 107
             L  +++ AL+ D  D +I   T      + A   +   K       G +N+D++AA K
Sbjct: 28  DDLLADELEALLAD-ADALIVSSTTPVTAEVLAKAPKL--KFIQVAGAGVDNIDLDAAKK 84

Query: 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT 167
            GI V N PG   E  AE A  L LA  RR+  AD  +R G    W    F G  L+G+T
Sbjct: 85  RGITVTNVPGANAEAVAEHALGLLLALLRRLPRADAAVRRGWGWLWAG--FPGYELEGKT 142

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 227
           VG++G GRIG   A+ + + F M ++YYD  +    E+                    R 
Sbjct: 143 VGIVGLGRIGQRVAKRL-QAFGMKVLYYDRTRKPEPEED----------------LGFRV 185

Query: 228 SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
            S+DE+L ++DV+ LH  L   T HLIN+E LA MK  A+LVN +RG ++DE AL+  LK
Sbjct: 186 VSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARGGLVDEDALLRALK 245

Query: 288 QNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASK 326
              +    LDVFE EP      L E+ N I+ PHIA  ++
Sbjct: 246 SGKIAGAALDVFEPEPLPADHPLLELPNVILTPHIAGYTE 285

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  226 bits (579), Expect = 2e-72
 Identities = 129/315 (40%), Positives = 183/315 (58%), Gaps = 27/315 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V  T+ +P    I +L E+   VE+   ++ I   E ++  + D  D ++  L+E  
Sbjct: 2   KPKVFITREIP-ENGIEML-EEHFEVEVWEDEREI-PREVLLEKVRD-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +F A  R   +  +N AVGY+N+DV  A + GI V NTPGVLTE TA+ A +L LA 
Sbjct: 58  DCEVFEAAPRL--RIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLAT 115

Query: 135 ARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           ARR+VEAD F+R+G +      W P +F+G  + G+T+G+IG GRIG A AR   +GF M
Sbjct: 116 ARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARR-AKGFGM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++YY   +    EK + A                    ++E+LRE+D +SLH  L K T
Sbjct: 175 RILYYSRTRKPEAEKELGA----------------EYRPLEELLRESDFVSLHVPLTKET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
           YH+IN+ERL  MK  AILVN +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L 
Sbjct: 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELF 278

Query: 311 EMKNAIVVPHIASAS 325
            +KN ++ PHI SA+
Sbjct: 279 SLKNVVLAPHIGSAT 293

Length = 333

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  213 bits (544), Expect = 4e-67
 Identities = 102/277 (36%), Positives = 136/277 (49%), Gaps = 25/277 (9%)

Query: 52  VEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIA 111
            E+ +       D +I  +T    E + AA      KA      G +N+D+ AA K GI 
Sbjct: 35  DEEELLEALADADALIVSVTP-VTEEVLAAAPN--LKAIGRAGAGVDNIDLEAATKRGIL 91

Query: 112 VGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI 171
           V N PG    + AEL  +L LA ARRI +AD   R G    W    F G  L G+TVG+I
Sbjct: 92  VVNAPGGNAISVAELVLALLLALARRIPDADASQRRG---EWDRKAFRGTELAGKTVGII 148

Query: 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD 231
           G GRIG A A+ + + F M +I YD Y            G                 S+D
Sbjct: 149 GLGRIGRAVAKRL-KAFGMKVIGYDPYSPRERAGVDGVVG---------------VDSLD 192

Query: 232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291
           E+L EAD+++LH  L   T  LIN E LA MK  AIL+N +RG V+DE AL+  L    +
Sbjct: 193 ELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKI 252

Query: 292 FRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASK 326
               LDVFE+EP +     L ++ N I+ PHI  ++ 
Sbjct: 253 AGAALDVFEEEP-LPADSPLWDLPNVILTPHIGGSTD 288

Length = 324

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  203 bits (518), Expect = 1e-63
 Identities = 90/232 (38%), Positives = 124/232 (53%), Gaps = 20/232 (8%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           VG +N+DV  A K GI V NTPG  + + AEL   L L+ AR I  A+  M+ G    W 
Sbjct: 72  VGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRANREMKLG---KWN 128

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
              + G  L+G+T+G+IG GRIG   A++      MN+I YD Y        +       
Sbjct: 129 KKKYKGIELRGKTLGIIGFGRIGREVAKI-ARALGMNVIAYDPYPKDEQAVELGV----- 182

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                      +  S++E+L+ +D ISLH  L   T H+INK+ L  MK  AI++N SRG
Sbjct: 183 -----------KTVSLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTSRG 231

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK 326
            VIDE AL+E LK   +    LDVFE+EP     L E+ N  + PHI +++K
Sbjct: 232 GVIDEEALLEALKSGKLAGAALDVFENEPPPGSKLLELPNVSLTPHIGASTK 283

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  200 bits (510), Expect = 4e-62
 Identities = 99/279 (35%), Positives = 137/279 (49%), Gaps = 34/279 (12%)

Query: 53  EDIIALIGDKCDGVIGQ---LTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG 109
           +++I    D  D ++ Q   +T +    +  AL R   K      VG +NVDV AA + G
Sbjct: 36  DELIEAAAD-ADALLVQYAPVTAE----VIEALPR--LKVIVRYGVGVDNVDVAAATERG 88

Query: 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNL--LKGQT 167
           I V N P   TE  A+ A +L LA AR++   D  +RAG +D  +     G +  L+G T
Sbjct: 89  IPVCNVPDYCTEEVADHALALILALARKLPFLDRAVRAGGWDWTV----GGPIRRLRGLT 144

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 227
           +G++G GRIG A A+   + F   +I YD Y                  +G   +   R 
Sbjct: 145 LGLVGFGRIGRAVAKRA-KAFGFRVIAYDPY----------------VPDGVAALGGVRV 187

Query: 228 SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
            S+DE+L  +DV+SLH  L   T HLI+ E LA MK  A LVN +RG ++DE AL   LK
Sbjct: 188 VSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVNTARGGLVDEAALARALK 247

Query: 288 QNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASAS 325
              +    LDV E+EP      L    N I+ PH A  S
Sbjct: 248 SGRIAGAALDVLEEEPPPADSPLLSAPNVILTPHAAWYS 286

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  199 bits (508), Expect = 8e-62
 Identities = 94/262 (35%), Positives = 137/262 (52%), Gaps = 22/262 (8%)

Query: 65  GVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTA 124
           G  G   E+    L + L     K  ++   GY+ +DV+A  K GI V NTPG + E TA
Sbjct: 60  GETGPFDEE----LISPLP-PSLKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATA 114

Query: 125 ELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMM 184
           + A  L L A R    A+   RAG + G+L      +  +G+T+G++G G IG A AR  
Sbjct: 115 DTALFLILGALRNFSRAERSARAGKWRGFLDLTLAHDP-RGKTLGILGLGGIGKAIARKA 173

Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
              F M +IY++  +     +   A                   S+DE+L ++DV+SL+ 
Sbjct: 174 A-AFGMKIIYHNRSRLPEELEKALA---------------TYYVSLDELLAQSDVVSLNC 217

Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304
            L   T HLINK+  A MK   I+VN +RG VIDE ALV+ L+   +   GLDVFE+EP 
Sbjct: 218 PLTAATRHLINKKEFAKMKDGVIIVNTARGAVIDEDALVDALESGKVASAGLDVFENEPE 277

Query: 305 MKPGLSEMKNAIVVPHIASASK 326
           + PGL +M N  ++PH+ + + 
Sbjct: 278 VNPGLLKMPNVTLLPHMGTLTV 299

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  190 bits (485), Expect = 2e-60
 Identities = 88/196 (44%), Positives = 109/196 (55%), Gaps = 24/196 (12%)

Query: 129 SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
           +L LA ARRI EAD  +RAG    W P+  +G  L G+TVG+IG GRIG A AR + + F
Sbjct: 2   ALLLALARRIPEADRQVRAG---RWRPDALLGRELSGKTVGIIGLGRIGRAVARRL-KAF 57

Query: 189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK 248
            M +I YD Y     E     Y                  S+DE+L E+DV+SLH  L  
Sbjct: 58  GMKVIAYDRYPKAEAEALGARY-----------------VSLDELLAESDVVSLHLPLTP 100

Query: 249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG 308
            T HLIN ERLA MK  AIL+N +RG ++DE AL+  LK   +    LDVFE EP   P 
Sbjct: 101 ETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPL-PPD 159

Query: 309 --LSEMKNAIVVPHIA 322
             L E+ N I+ PHIA
Sbjct: 160 HPLLELPNVILTPHIA 175

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  192 bits (491), Expect = 2e-59
 Identities = 109/314 (34%), Positives = 151/314 (48%), Gaps = 32/314 (10%)

Query: 17  RVVSTKPMPGTRW--INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           +V+   P        +  L+     VE+     T   +++  AL+ D  D ++  + +  
Sbjct: 1   KVLFLGPEFPDAEELLRALLPPAPGVEV----VTAAELDEEAALLAD-ADVLVPGMRKVI 55

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              L AA  R   +      VG + VD+ AA   GI V N PG   E+ AE A  L LA 
Sbjct: 56  DAELLAAAPRL--RLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLMLAL 113

Query: 135 ARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI 193
            RR+ EAD  +RAG    W  P       L G+TVG++G G IG A AR +  GF + +I
Sbjct: 114 LRRLPEADRELRAG---RWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLR-GFGVEVI 169

Query: 194 YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253
           YYD               +F     E+     R   +DE+L E+DV+SLH  L   T HL
Sbjct: 170 YYD---------------RFRDPEAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHL 214

Query: 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSE 311
           I  E LA MK  AIL+N +RG ++DE AL+  L+   +   GLDVF  EP + P   L  
Sbjct: 215 IGAEELAAMKPGAILINTARGGLVDEEALLAALRSGHLAGAGLDVFWQEP-LPPDDPLLR 273

Query: 312 MKNAIVVPHIASAS 325
           + N I+ PHIA  +
Sbjct: 274 LDNVILTPHIAGVT 287

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  191 bits (487), Expect = 2e-58
 Identities = 91/274 (33%), Positives = 136/274 (49%), Gaps = 34/274 (12%)

Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTET 122
            DGV+ Q T  + E ++  L+  G K  +  + G + +D++ A + G+ + N P      
Sbjct: 45  YDGVVVQQTLPYDEEVYEKLAEYGIKQIALRSAGVDMIDLDLAKENGLKITNVPAYSPRA 104

Query: 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
            AE A + +L   R   E D  +  G +  W P L +G  ++  TVG+IG GRIGSA A+
Sbjct: 105 IAEFAVTQALNLLRNTPEIDRRVAKGDFR-WAPGL-IGREIRDLTVGIIGTGRIGSAAAK 162

Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
           +  +GF   +I YD Y    LEKF+  Y                  S++++L++AD+ISL
Sbjct: 163 IF-KGFGAKVIAYDPYPNPELEKFLLYY-----------------DSLEDLLKQADIISL 204

Query: 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
           H  L K  +HLIN E  A MK  AILVN +RG ++D  AL++ L    +    LD +E+E
Sbjct: 205 HVPLTKENHHLINAEAFAKMKDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYENE 264

Query: 303 -PYMKPGLS-------------EMKNAIVVPHIA 322
             Y     S              M N ++ PHIA
Sbjct: 265 TGYFNKDWSGKEIEDEVLKELIAMPNVLITPHIA 298

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  192 bits (492), Expect = 2e-57
 Identities = 109/311 (35%), Positives = 151/311 (48%), Gaps = 62/311 (19%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG----QLTEDWGETLFAALS----- 83
           +++    VE+    KT L  E+++ +IGD  D +I     ++T +    +  A       
Sbjct: 16  ILKDAPGVEVDV--KTGLDKEELLEIIGD-YDALIVRSATKVTAE----VLEAAKNLKVI 68

Query: 84  -RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEAD 142
            RAG        VG +NVDV AA + GI V N P   T + AE   +L LA AR I +A 
Sbjct: 69  GRAG--------VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAH 120

Query: 143 EFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR 202
             ++AG    W    F+G  L G+T+G+IG GRIGS  A+   + F M +I YD Y    
Sbjct: 121 ASLKAGK---WERKKFMGVELYGKTLGIIGLGRIGSEVAKRA-KAFGMKVIAYDPY---- 172

Query: 203 LEKFVTAYGQFLKANGEQPVTWKRASSM-------DEVLREADVISLHPVLDKTTYHLIN 255
                              ++ +RA+ +       DE+L  AD I+LH  L   T  LI 
Sbjct: 173 -------------------ISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIG 213

Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP-YMKPGLSEMKN 314
            E LA MK    ++NC+RG +IDE AL E LK   +    LDVFE EP    P L E+ N
Sbjct: 214 AEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSP-LFELPN 272

Query: 315 AIVVPHIASAS 325
            +V PH+  AS
Sbjct: 273 VVVTPHLG-AS 282

Length = 526

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  181 bits (461), Expect = 7e-55
 Identities = 96/264 (36%), Positives = 147/264 (55%), Gaps = 24/264 (9%)

Query: 66  VIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPG-VLTETTA 124
           +I  +T ++ +  F        K  +   +GY+NVD+ AA ++G+ V   PG V  +  A
Sbjct: 51  IIASVTPNFDKEFFEYNDGL--KLIARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVA 108

Query: 125 ELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMM 184
           E A +L L   R+I +A E ++ G +       FVG+ L G+TVG+IG G IGS  A ++
Sbjct: 109 EHAVALILTVLRKINQASEAVKEGKWT--ERANFVGHELSGKTVGIIGYGNIGSRVAEIL 166

Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
            EGF   ++ YD Y +           + +K  G +PV      S++E+L E+D+ISLH 
Sbjct: 167 KEGFNAKVLAYDPYVSE----------EVIKKKGAKPV------SLEELLAESDIISLHA 210

Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304
            L + TYH+IN++  + MKK  ILVN +RG +IDE AL+E LK   +   GLDV E+EP 
Sbjct: 211 PLTEETYHMINEKAFSKMKKGVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEP- 269

Query: 305 MKPG--LSEMKNAIVVPHIASASK 326
           +K    L   +N ++ PHI + + 
Sbjct: 270 IKADHPLLHYENVVITPHIGAYTY 293

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  179 bits (458), Expect = 2e-54
 Identities = 88/241 (36%), Positives = 126/241 (52%), Gaps = 30/241 (12%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY-- 150
           +A GYNNVD+ AA + GI V N PG  T++ A+   +L LA AR +   ++ ++AG +  
Sbjct: 72  LATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHNDVVKAGEWQK 131

Query: 151 -DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL-EKFVT 208
              +    +    L G+T+G+IG G IG A AR+    F M +++ +   A  L E +V 
Sbjct: 132 SPDFCFWDYPIIELAGKTLGIIGYGNIGQAVARI-ARAFGMKVLFAERKGAPPLREGYV- 189

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                               S+DE+L ++DVISLH  L   T +LIN E LA MK  AIL
Sbjct: 190 --------------------SLDELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAIL 229

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG---LSEMKNAIVVPHIASAS 325
           +N +RG ++DE AL + L    +   GLDV   EP  +     L    N I+ PHIA AS
Sbjct: 230 INTARGGLVDEQALADALNSGKIAGAGLDVLSQEP-PRADNPLLKAAPNLIITPHIAWAS 288

Query: 326 K 326
           +
Sbjct: 289 R 289

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  178 bits (455), Expect = 5e-54
 Identities = 80/233 (34%), Positives = 120/233 (51%), Gaps = 21/233 (9%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           G  NVDV AA + GI V NTPG   E  AE    L LA  R I  A   ++ G +     
Sbjct: 77  GPENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLMLAETRNIARAHAALKDGEWRKDYY 136

Query: 156 NL-FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
           N    G  L+G+TVG++G G IG   A+ + + F   ++ YD         +V    + +
Sbjct: 137 NYDGYGPELRGKTVGIVGFGAIGRRVAKRL-KAFGAEVLVYD--------PYVDP--EKI 185

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
           +A+G + V      S++E+L+ +DV+SLH  L   T  +I  E  A MK  A  +N +R 
Sbjct: 186 EADGVKKV------SLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARA 239

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASAS 325
            ++DE AL+E L++  +    LDVF +EP +     L ++ N  + PHIA A+
Sbjct: 240 GLVDEDALIEALEEGKIGGAALDVFPEEP-LPADHPLLKLDNVTLTPHIAGAT 291

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  178 bits (453), Expect = 6e-54
 Identities = 89/236 (37%), Positives = 131/236 (55%), Gaps = 24/236 (10%)

Query: 91  SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
           ++  VGY+ +D++AA   GI V NTPGVLT+  A+LA  L LA  RRI  AD F+RAG  
Sbjct: 69  ASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVLRRIPAADRFVRAG-- 126

Query: 151 DGWLPNLF-VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
             W    F +   + G+ VG++G GRIG A AR  +E F M + Y+      R  K    
Sbjct: 127 -RWPKGAFPLTRKVSGKRVGIVGLGRIGRAIAR-RLEAFGMEIAYHG-----RRPK---- 175

Query: 210 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 269
                       V ++  +S+ E+  E+DV+ +       T HL+N E L  +  + +LV
Sbjct: 176 ----------PDVPYRYYASLLELAAESDVLVVACPGGPATRHLVNAEVLEALGPDGVLV 225

Query: 270 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
           N +RG V+DE AL+  L++  +   GLDVFE+EP +   L ++ N ++ PHIASA+
Sbjct: 226 NVARGSVVDEAALIAALQEGRIAGAGLDVFENEPNVPAALLDLDNVVLTPHIASAT 281

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  178 bits (453), Expect = 8e-54
 Identities = 86/294 (29%), Positives = 131/294 (44%), Gaps = 23/294 (7%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
           L+++   VE+  +    L  E+++    D  D +I + T      +  A      K  + 
Sbjct: 14  LLKEGGEVEVHDE----LLTEELLEAAKD-ADALIVRSTTPVTAEVLEAAPGL--KVIAR 66

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
             VG +N+D++AA + GI V N PG  TE+ AEL   L LA ARRI EAD  +RAG +  
Sbjct: 67  RGVGVDNIDLDAATERGILVTNVPGYSTESVAELTVGLILALARRIPEADASVRAGDWKK 126

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
             P       L G+T+GVIG G IG   A +  +   M ++ YD Y      +       
Sbjct: 127 GGPIGL---ELYGKTLGVIGGGGIGGIGAAIA-KALGMGVVAYDPYPNPERAEEGGVEVL 182

Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
            L               + ++    D+I+L P     T H+I  E    +K    + N  
Sbjct: 183 LLDLL------------LLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAINNAR 230

Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK 326
            G VI+E AL   L++         V E+ P +   L ++ N I+ PHIA A++
Sbjct: 231 GGGVIEEAALDALLEEGIAAAALDVVEEEPPPVNSPLLDLPNVILTPHIAGATE 284

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  175 bits (446), Expect = 1e-52
 Identities = 92/307 (29%), Positives = 133/307 (43%), Gaps = 41/307 (13%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKA 89
             +L      VEI T    +L+ ++   L     D ++   T+     L       G K 
Sbjct: 17  KEILKAGGVDVEIVT---YLLNDDETAELAKG-ADAILTAFTDKIDAELLDKA--PGLKF 70

Query: 90  FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL 149
            S  A GY+N+D++ A + GI V N P       AE   +L LA  R     DE  +   
Sbjct: 71  ISLRATGYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLRNRKYIDERDKNQD 130

Query: 150 YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
                  +  G  L+ QTVGV+G G+IG A A+   +GF M +I YD ++   LE     
Sbjct: 131 LQ-DAGVI--GRELEDQTVGVVGTGKIGRAVAQRA-KGFGMKVIAYDPFRNPELEDKGVK 186

Query: 210 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 269
           Y                  S++E+ + +D+ISLH  L    +H+IN+E    MKK  I++
Sbjct: 187 Y-----------------VSLEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGVIII 229

Query: 270 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--------------KPGLSEMKNA 315
           N +RG ++D  AL+E L    +F  GLDV EDE                    L    N 
Sbjct: 230 NTARGSLVDTEALIEALDSGKIFGAGLDVLEDETPDLLKDLEGEIFKDALNALLGRRPNV 289

Query: 316 IVVPHIA 322
           I+ PH A
Sbjct: 290 IITPHTA 296

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  177 bits (452), Expect = 1e-51
 Identities = 110/325 (33%), Positives = 164/325 (50%), Gaps = 57/325 (17%)

Query: 17  RVVSTKPM-PGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLT 71
           +V+   P+ P    I++L +    V++    +T LS E+++ +I D  D +I     ++T
Sbjct: 1   KVLIADPISPDG--IDILEDVGVEVDV----QTGLSREELLEIIPDY-DALIVRSATKVT 53

Query: 72  EDWGETLFAALS------RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAE 125
           E+    + AA        RAG        VG +N+D+ AA   GI V N P   T + AE
Sbjct: 54  EE----VIAAAPKLKVIGRAG--------VGVDNIDIEAATARGILVVNAPTGNTISAAE 101

Query: 126 LAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV 185
            A ++ LAAAR I +AD  ++ G    W    F+G  L G+T+GVIG GRIGS  A+   
Sbjct: 102 HALAMLLAAARNIPQADASLKEG---EWDRKAFMGTELYGKTLGVIGLGRIGSIVAKR-A 157

Query: 186 EGFKMNLIYYDLY----QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           + F M ++ YD Y    +A +L                     +    +DE+L  AD I+
Sbjct: 158 KAFGMKVLAYDPYISPERAEQL-------------------GVELVDDLDELLARADFIT 198

Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           +H  L   T  LI  E LA MKK  I+VNC+RG +IDE AL E L++  +    LDVFE 
Sbjct: 199 VHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEK 258

Query: 302 EPYMKPGLSEMKNAIVVPHIASASK 326
           EP     L ++ N I  PH+ ++++
Sbjct: 259 EPPTDNPLFDLDNVIATPHLGASTR 283

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  168 bits (427), Expect = 8e-50
 Identities = 95/266 (35%), Positives = 140/266 (52%), Gaps = 26/266 (9%)

Query: 64  DGVIGQLTEDWGETLFAALSRAGGK--AFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTE 121
           +G++G      GE + AAL     K  A S ++VGY+N DV+A     I + +TP VLTE
Sbjct: 47  EGLLGS-----GEKVDAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTE 101

Query: 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 181
           T A+   +L L+ ARR+VE  E ++AG +   +   + G  +  +T+G++G GRIG A A
Sbjct: 102 TVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALA 161

Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           +    GF M ++Y         E+   A                R   +D +L+E+D + 
Sbjct: 162 QRAHFGFNMPILYNARRHHKEAEERFNA----------------RYCDLDTLLQESDFVC 205

Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           +   L   T+HL   E+ A MK  AI +N  RGPV+DE AL+  L++  +   GLDVFE 
Sbjct: 206 IILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQ 265

Query: 302 EPYMK--PGLSEMKNAIVVPHIASAS 325
           EP     P LS + N + VPHI SA+
Sbjct: 266 EPLSVDSPLLS-LPNVVAVPHIGSAT 290

Length = 323

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  167 bits (426), Expect = 1e-49
 Identities = 86/234 (36%), Positives = 125/234 (53%), Gaps = 24/234 (10%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
            G ++VD+ A  + GI V N  G  TE  AEL   L++   R IV  D  +RAG      
Sbjct: 78  TGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLLRNIVPCDAAVRAG----GT 133

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
               +G  L G+TVG++G G IG   AR+  + F   ++ Y      R EK      +  
Sbjct: 134 KAGLIGRELAGKTVGIVGTGAIGLRVARL-FKAFGCKVLAYS-----RSEK------EEA 181

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
           KA G   + +    S+DE+L E+D++SLH  L+  T  LI KE+LA MK+ AIL+N +RG
Sbjct: 182 KALG---IEYV---SLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARG 235

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASK 326
           PV+D  AL + L +  +   G+DVF+ EP +     L    N I+ PH+A A++
Sbjct: 236 PVVDNEALADALNEGKIAGAGIDVFDMEPPLPADYPLLHAPNTILTPHVAFATE 289

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  167 bits (426), Expect = 1e-49
 Identities = 84/207 (40%), Positives = 113/207 (54%), Gaps = 21/207 (10%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           G+NNVD+ AA + GI V   P       AE A +L LA  R+I  A   +R G +   L 
Sbjct: 78  GFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLALNRKIHRAYNRVREGNFS--LD 135

Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
            L +G  L G+TVGVIG G+IG A+AR++  GF   ++ YD Y    L K    Y     
Sbjct: 136 GL-LGFDLHGKTVGVIGTGKIGQAFARILK-GFGCRVLAYDPYPNPELAKLGVEYV---- 189

Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
                         +DE+L E+D+ISLH  L   T+HLIN E +A MK   +L+N SRG 
Sbjct: 190 -------------DLDELLAESDIISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGG 236

Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDE 302
           +ID  AL+E LK   +  +GLDV+E+E
Sbjct: 237 LIDTKALIEALKSGKIGGLGLDVYEEE 263

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  165 bits (421), Expect = 8e-49
 Identities = 87/255 (34%), Positives = 124/255 (48%), Gaps = 53/255 (20%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADE------FMRAG 148
            G++++D+ A  + GIAV N P     T AE A +L LA +R++ EA E      F +AG
Sbjct: 72  TGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLALSRKLREAIERTRRGDFSQAG 131

Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           L          G  L G+T+GV+G GRIG   AR+   GF M ++ YD+      E+   
Sbjct: 132 L---------RGFELAGKTLGVVGTGRIGRRVARIAR-GFGMKVLAYDVVPD---EELAE 178

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
             G              R  S++E+L+E+D+ISLH      T+HLIN+E  A MK  A+L
Sbjct: 179 RLGF-------------RYVSLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGAVL 225

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-------------------- 308
           +N +RG V+D  ALV  LK+  +   GLDV E E  ++                      
Sbjct: 226 INTARGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLLADH 285

Query: 309 -LSEMKNAIVVPHIA 322
            L    N I+ PH+A
Sbjct: 286 ALLRKPNVIITPHVA 300

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  165 bits (420), Expect = 9e-49
 Identities = 106/317 (33%), Positives = 145/317 (45%), Gaps = 32/317 (10%)

Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           +VV T  +     + LL +  C V      +  LS E+++    D  DG++  + +    
Sbjct: 3   KVVITHKVH-PEVLELL-KPHCEVISNQTDEP-LSREELLRRCKD-ADGLMAFMPDRIDA 58

Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
               A  R   K  +    GY+N DV A    GI V   P +LTE TAEL   L +   R
Sbjct: 59  DFLDACPRL--KIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLGR 116

Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
            I+  D F+R+G + GW P  + G  L G+TVG++G G +G A AR +  GF   L+YYD
Sbjct: 117 HILAGDRFVRSGKFGGWRPKFY-GTGLDGKTVGILGMGALGRAIARRLS-GFGATLLYYD 174

Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
                       A  Q L           R   +DE+L  +D + L   L   T HLIN 
Sbjct: 175 ------PHPLDQAEEQALNL---------RRVELDELLESSDFLVLALPLTPDTLHLINA 219

Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP--------G 308
           E LA MK  A+LVN  RG V+DE A+ E LK   +     DVFE E + +P         
Sbjct: 220 EALAKMKPGALLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFEMEDWARPDRPRSIPQE 279

Query: 309 LSEMK-NAIVVPHIASA 324
           L +     +  PHI SA
Sbjct: 280 LLDQHDRTVFTPHIGSA 296

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  161 bits (410), Expect = 2e-47
 Identities = 85/236 (36%), Positives = 117/236 (49%), Gaps = 23/236 (9%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K      +   ++D+ AA + GI V  T G     TAEL  +L LA AR + E D  +RA
Sbjct: 71  KLLVTTGMRNASIDLAAAKERGIVVCGTGGG-PTATAELTWALILALARNLPEEDAALRA 129

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G   GW   L  G  L G+T+G++G GRIG+  AR+  + F M                V
Sbjct: 130 G---GWQTTL--GTGLAGKTLGIVGLGRIGARVARIG-QAFGMR---------------V 168

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
            A+   L A        + A S +E+   +DV+SLH VL   T  L+  E LA MK  A+
Sbjct: 169 IAWSSNLTAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTAL 228

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP-YMKPGLSEMKNAIVVPHIA 322
           LVN SRGP++DE AL+  L+   +    LDVF+ EP      L  + N ++ PHI 
Sbjct: 229 LVNTSRGPLVDEGALLAALRAGRIAGAALDVFDVEPLPADHPLRGLPNVLLTPHIG 284

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  161 bits (409), Expect = 3e-47
 Identities = 87/247 (35%), Positives = 121/247 (48%), Gaps = 33/247 (13%)

Query: 81  ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVE 140
           A++RAG         G NN+DV+AA+K GI V NTPG      AEL  ++ LA +R I++
Sbjct: 53  AIARAG--------AGVNNIDVDAASKRGIVVFNTPGANANAVAELVIAMMLALSRNIIQ 104

Query: 141 ADEFMRAGLYDG------WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
           A +++  G  D            FVG  L+G+T+GVIG G IG   A        M +I 
Sbjct: 105 AIKWVTNGDGDDISKGVEKGKKQFVGTELRGKTLGVIGLGNIGRLVANA-ALALGMKVIG 163

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           YD Y +      ++   Q             R +S++E+L  AD I+LH  L   T  LI
Sbjct: 164 YDPYLSVEAAWKLSVEVQ-------------RVTSLEELLATADYITLHVPLTDETRGLI 210

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
           N E LA MK  AIL+N +RG ++DE AL+E L +  +     D  E        L  + N
Sbjct: 211 NAELLAKMKPGAILLNFARGEIVDEEALLEALDEGKLGGYVTDFPEPA-----LLGHLPN 265

Query: 315 AIVVPHI 321
            I  PH+
Sbjct: 266 VIATPHL 272

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  156 bits (396), Expect = 3e-45
 Identities = 91/298 (30%), Positives = 134/298 (44%), Gaps = 49/298 (16%)

Query: 44  TQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVN 103
           T  K  L++E+     G     ++G         L   L  AG K  S  ++GY+++D++
Sbjct: 28  TLTKEPLTLENAHLAEGYDGISILG--KSKISAELLEKLKEAGVKYISTRSIGYDHIDLD 85

Query: 104 AANKYGIAVGNTP----GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV 159
           AA + GI V N       V     A+    L L A R+  +     RA + D  L  L  
Sbjct: 86  AAKELGIKVSNVTYSPNSV-----ADYTVMLMLMALRKYKQI--MKRAEVNDYSLGGL-Q 137

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
           G  L+  TVGVIG GRIG A  + +  GF   ++ YD Y    ++K+   Y         
Sbjct: 138 GRELRNLTVGVIGTGRIGQAVIKNL-SGFGCKILAYDPYPNEEVKKYAE-Y--------- 186

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279
                     +D + +E+D+I+LH  L + TYHLINKE +A MK   I++N +RG +ID 
Sbjct: 187 --------VDLDTLYKESDIITLHTPLTEETYHLINKESIAKMKDGVIIINTARGELIDT 238

Query: 280 VALVEHLKQNPMFRVGLDVFEDE---------------PYMKPGLSEMKNAIVVPHIA 322
            AL+E L+   +    LDV E E                 +   L    N I+ PH+A
Sbjct: 239 EALIEGLESGKIGGAALDVIEGEDGIYYNDRKGDILSNRELAI-LRSFPNVILTPHMA 295

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  144 bits (366), Expect = 8e-41
 Identities = 77/241 (31%), Positives = 113/241 (46%), Gaps = 28/241 (11%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            + G +++ +    + G+ V N  G  +   AE A +L LA A+RIVE D  +R G++ G
Sbjct: 67  PSAGVDHLPLERLPE-GVVVANNHG-NSPAVAEHALALILALAKRIVEYDNDLRRGIWHG 124

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
                     L+G+TVG++G G IG   AR++ + F M                V    +
Sbjct: 125 RAGEEPESKELRGKTVGILGYGHIGREIARLL-KAFGMR---------------VIGVSR 168

Query: 213 FLKANGEQPVTWKRASSM-DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
             K   ++   +    S  DE L +ADV+ +   L K T  LI    LA MK  AILVN 
Sbjct: 169 SPKE--DEGADFVGTLSDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNV 226

Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVF----EDEPYMKP---GLSEMKNAIVVPHIASA 324
            RGPV+DE AL E LK+ P+    +DV+         + P      E+ N I+ PH A  
Sbjct: 227 GRGPVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIMSPHNAGW 286

Query: 325 S 325
           +
Sbjct: 287 T 287

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  144 bits (366), Expect = 9e-41
 Identities = 71/217 (32%), Positives = 103/217 (47%), Gaps = 24/217 (11%)

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV 168
           GI V +      E  AE   +  L A RRI       RAG  D   P    G  L G+TV
Sbjct: 95  GILVTSAADANAEPVAEFTLAAILLALRRIPRFAAAYRAG-RDWGWPTRRGGRGLYGRTV 153

Query: 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228
           G++G GRIG A   + +  F + ++ YD         ++ A      A G          
Sbjct: 154 GIVGFGRIGRAVVEL-LRPFGLRVLVYD--------PYLPA--AEAAALGV------ELV 196

Query: 229 SMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
           S+DE+L  +DV+SLH P+  +T   +I+   LA M+  A  +N +RG ++DE AL+  L+
Sbjct: 197 SLDELLARSDVVSLHAPLTPETR-GMIDARLLALMRDGATFINTARGALVDEAALLAELR 255

Query: 288 QNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIA 322
                R  LDV + EP + P   L  + N ++ PHIA
Sbjct: 256 SG-RLRAALDVTDPEP-LPPDSPLRTLPNVLLTPHIA 290

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  138 bits (351), Expect = 7e-39
 Identities = 79/233 (33%), Positives = 119/233 (51%), Gaps = 29/233 (12%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G N VD++AA K GI V N P   T + AEL     +  ARR+ + +     G    W 
Sbjct: 73  IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIMLARRLPDRNAAAHRG---IWN 129

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
            +    + ++G+T+G+IG G IGS  + +  E   M +I+YD+  A +L       G   
Sbjct: 130 KSATGSHEVRGKTLGIIGYGHIGSQLSVL-AEALGMRVIFYDI--AEKL-----PLG--- 178

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                     ++ SS++E+L EAD ++LH     +T ++I  E +A MKK AIL+N SRG
Sbjct: 179 --------NARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASRG 230

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHI 321
            V+D  AL E L+   +    +DVF        EP+  P L  + N I+ PHI
Sbjct: 231 TVVDIDALAEALRSGHLAGAAVDVFPEEPASNGEPFSSP-LQGLPNVILTPHI 282

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score =  138 bits (351), Expect = 9e-39
 Identities = 79/244 (32%), Positives = 123/244 (50%), Gaps = 34/244 (13%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            A G NNVD+  A K GIAV N  G  TE+ A+   ++ L+   RI   D ++++G Y  
Sbjct: 70  TATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSE 129

Query: 153 WLPNLFVG-----NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
               +F         +KG+  G+IG G IG   A++  + F   ++YY      + E++ 
Sbjct: 130 --SPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKI-AQAFGAKVVYYSTSGKNKNEEY- 185

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
                                S++E+L+ +D+IS+H  L++ T +LI  + L  +K  AI
Sbjct: 186 ------------------ERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAI 227

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNA---IVVPHIA 322
           L+N  RG +++E  L + L +  +   GLDV E EP  K  P LS +KN    ++ PHIA
Sbjct: 228 LINVGRGGIVNEKDLAKALDEKDI-YAGLDVLEKEPMEKNHPLLS-IKNKEKLLITPHIA 285

Query: 323 SASK 326
            ASK
Sbjct: 286 WASK 289

Length = 311

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score =  135 bits (343), Expect = 3e-37
 Identities = 74/232 (31%), Positives = 112/232 (48%), Gaps = 48/232 (20%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAE-LAASLSLAAARRIVEADEFMRAGLYDGWL 154
           G +++D +   + GI   N PG    + AE + ++L + A R+                 
Sbjct: 67  GTDHIDTDYLKERGIGFANAPGCNANSVAEYVLSALLVLAQRQ----------------- 109

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
                G  LKG+TVG++G G +GS  AR  +E   MN++  D  +A              
Sbjct: 110 -----GFSLKGKTVGIVGVGNVGSRLARR-LEALGMNVLLCDPPRAEAEGDPGFV----- 158

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVN 270
                         S++E+L EAD+I+LH  L +     TYHL++++ LA +K   IL+N
Sbjct: 159 --------------SLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILIN 204

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322
            SRG VID  AL+  L++    RV LDV+E+EP +   L + K  I  PHIA
Sbjct: 205 ASRGAVIDNQALLALLQRGKDLRVVLDVWENEPEIDLELLD-KVDIATPHIA 255

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score =  127 bits (320), Expect = 4e-34
 Identities = 74/256 (28%), Positives = 118/256 (46%), Gaps = 28/256 (10%)

Query: 50  LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG 109
           L+ E++    G   D VI +      +         G K      VG+N++D+ AA + G
Sbjct: 34  LNDENVHLAKG--HDAVIVRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELG 91

Query: 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY--DGWLPNLFVGNLLKGQT 167
             +   P       AELA +L++  +R             +  D   P +F    ++  T
Sbjct: 92  FKMARVPSYSPNAIAELAFTLAMTLSRHTAYTASRTANKNFKVD---PFMF-SKEIRNST 147

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 227
           VG+IG GRIG   A++  +G    +I YD+Y +   +  VT                   
Sbjct: 148 VGIIGTGRIGLTAAKLF-KGLGAKVIGYDIYPSDAAKDVVTFV----------------- 189

Query: 228 SSMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
            S+DE+L+++D+ISLH P +      LINKE ++ MK  AIL+N +RG + DE A++E L
Sbjct: 190 -SLDELLKKSDIISLHVPYIKGKNDKLINKEFISKMKDGAILINTARGELQDEEAILEAL 248

Query: 287 KQNPMFRVGLDVFEDE 302
           +   +   G DV  +E
Sbjct: 249 ESGKLAGFGTDVLNNE 264

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  124 bits (315), Expect = 1e-32
 Identities = 93/288 (32%), Positives = 137/288 (47%), Gaps = 46/288 (15%)

Query: 47  KTILSVEDIIALIGDKCDGVIG-----QLTEDWGETLFAALSR--AGGKAFSNMAVGYNN 99
           K  L  E++I  I D     IG     QLTE+    + AA  +  A G  F    +G N 
Sbjct: 39  KGALDEEELIEAIKDA--HFIGIRSRTQLTEE----VLAAAEKLVAIG-CFC---IGTNQ 88

Query: 100 VDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV 159
           VD++AA K GI V N P   T + AEL     +   R I E +     G   GW  +   
Sbjct: 89  VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRG---GWNKSAAG 145

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
              ++G+T+G++G G IG+  + ++ E   M + +YD+    +L       G     N  
Sbjct: 146 SFEVRGKTLGIVGYGHIGTQLS-VLAESLGMRVYFYDI--EDKL-----PLG-----NAR 192

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279
           Q        S++E+L ++DV+SLH     +T ++I  E LA MK  AIL+N SRG V+D 
Sbjct: 193 Q------VGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDI 246

Query: 280 VALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHI 321
            AL + LK   +    +DVF        +P+  P L  + N I+ PHI
Sbjct: 247 DALADALKSGHLAGAAIDVFPVEPKSNGDPFESP-LRGLDNVILTPHI 293

Length = 409

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score =  120 bits (303), Expect = 8e-32
 Identities = 75/246 (30%), Positives = 113/246 (45%), Gaps = 41/246 (16%)

Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
           A G NNVD+ AA + GIAV N  G  + T  E    +  A    ++    + R  L D W
Sbjct: 73  ATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMG---WYRDQLSDRW 129

Query: 154 LPNLFVGNL---------LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE 204
                             ++G T+GV G G +G+   R+  +   M ++Y +   A+   
Sbjct: 130 ATC---KQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRL-AQALGMKVLYAEHKGASVCR 185

Query: 205 KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264
           +  T +                    +EVL++AD+++LH  L +TT +LIN E LA MK 
Sbjct: 186 EGYTPF--------------------EEVLKQADIVTLHCPLTETTQNLINAETLALMKP 225

Query: 265 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP-----GLSEMKNAIVVP 319
            A L+N  RGP++DE AL++ L+   +    LDV   EP  K          + N ++ P
Sbjct: 226 TAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITP 285

Query: 320 HIASAS 325
           HIA AS
Sbjct: 286 HIAWAS 291

Length = 314

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score =  117 bits (295), Expect = 1e-30
 Identities = 78/245 (31%), Positives = 116/245 (47%), Gaps = 40/245 (16%)

Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
           A G NNVD+ AA + GI V N  G  T + A+   +L LA A R+ +  + + AG    W
Sbjct: 74  ATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAG---RW 130

Query: 154 -------LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206
                  L + F    L+G+T+G++G G +G A AR+  E F M ++             
Sbjct: 131 QQSSQFCLLD-FPIVELEGKTLGLLGHGELGGAVARL-AEAFGMRVLI------------ 176

Query: 207 VTAYGQFLKANGEQPVTWKRASSM--DEVLREADVISLHPVLDKTTYHLINKERLATMKK 264
                      G+ P    R   +  DE+L + D ++LH  L + T HLI    LA MK 
Sbjct: 177 -----------GQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKP 225

Query: 265 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSE-MKNAIVVPHI 321
            A+L+N +RG ++DE AL + L+   +     DV   EP +   P L+  +   IV PH 
Sbjct: 226 GALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHS 285

Query: 322 ASASK 326
           A  S+
Sbjct: 286 AWGSR 290

Length = 317

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score =  117 bits (294), Expect = 2e-30
 Identities = 67/274 (24%), Positives = 120/274 (43%), Gaps = 35/274 (12%)

Query: 64  DGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETT 123
           DG+         E ++  L+  G K  +  + G++  D+  A KY + + N P    E+ 
Sbjct: 47  DGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESI 106

Query: 124 AELAASLSLAAARRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
           AE   + ++   R   +    +R   +D  W P + +   +K   V VIG GRIG A A+
Sbjct: 107 AEFTVTQAINLVRHFNQIQTKVR--EHDFRWEPPI-LSRSIKDLKVAVIGTGRIGLAVAK 163

Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
           +  +G+  +++ YD +   +   +V                     +++E +  AD+++L
Sbjct: 164 IFAKGYGSDVVAYDPFPNAKAATYVD-----------------YKDTIEEAVEGADIVTL 206

Query: 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
           H    K  ++L N +     KK A+ VNC+RG ++D  AL++ L    +    LD +E E
Sbjct: 207 HMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFE 266

Query: 303 PYMKPG--------------LSEMKNAIVVPHIA 322
             + P               L   ++ I+ PHIA
Sbjct: 267 RPLFPSDQRGQTINDPLLESLINREDVILTPHIA 300

Length = 332

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  113 bits (284), Expect = 4e-29
 Identities = 73/237 (30%), Positives = 112/237 (47%), Gaps = 33/237 (13%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           G  N+D+  A + GI + N P    +   E A  + LA   ++  AD+ +R G+   W  
Sbjct: 72  GLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRADQEVRNGI---WDR 128

Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
               G  L G+TVG+IG G +G A+A+ +  GF   +I YD Y+             F  
Sbjct: 129 EGNRGVELMGKTVGIIGYGNMGKAFAKRL-SGFGCKVIAYDKYK------------NFGD 175

Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
           A  EQ        S++ + +EAD++SLH  L   T  ++NKE +++ KK    +N +RG 
Sbjct: 176 AYAEQ-------VSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGK 228

Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPG----LSEMKNAIVVPHIA 322
           V+    LV+ LK   +    LDV E E       + +P     L +    I+ PHIA
Sbjct: 229 VVVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVILTPHIA 285

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  111 bits (281), Expect = 2e-28
 Identities = 69/244 (28%), Positives = 99/244 (40%), Gaps = 39/244 (15%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            + G + +      +  + + N  G+     AE      LA AR++              
Sbjct: 66  TSAGVDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKLPRYARNQAERR--- 122

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-- 210
           W     V   L G+TV ++G G IG   AR   + F M                V     
Sbjct: 123 WQRRGPVR-ELAGKTVLIVGLGDIGREIARRA-KAFGMR---------------VIGVRR 165

Query: 211 -GQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLATMKKEAIL 268
            G+      ++  T      +DE+L EAD V++  P L   T  L N ER A MK  A+L
Sbjct: 166 SGRPAPPVVDEVYT---PDELDELLPEADYVVNALP-LTPETRGLFNAERFAAMKPGAVL 221

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIA 322
           +N  RG V+DE AL+E L+   +    LDVFE+EP     L        + N I+ PHI+
Sbjct: 222 INVGRGSVVDEDALIEALESGRIAGAALDVFEEEP-----LPADSPLWDLPNVIITPHIS 276

Query: 323 SASK 326
             S 
Sbjct: 277 GDSP 280

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score =  111 bits (278), Expect = 3e-28
 Identities = 86/300 (28%), Positives = 139/300 (46%), Gaps = 44/300 (14%)

Query: 40  VEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE---TLFAALSRAGGKAFSNMAVG 96
           VE+ T K+ +LS   +     D+     G  T  +G+    ++  L   G K  +    G
Sbjct: 26  VEVTTSKE-LLSSATV-----DQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAG 79

Query: 97  YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN 156
           ++  D++ A K+ I + N P    ET AE + S++L   RR  + +  ++A  +      
Sbjct: 80  FDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAE- 138

Query: 157 LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA 216
             +   +K  TV +IG GRIG+A A++   GF   +  YD Y    L+        FL  
Sbjct: 139 -IMSKPVKNMTVAIIGTGRIGAATAKIYA-GFGATITAYDAYPNKDLD--------FL-- 186

Query: 217 NGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276
                 T+K   S+ E +++AD+ISLH   +K +YHL +K     +KK AILVN +RG V
Sbjct: 187 ------TYK--DSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAV 238

Query: 277 IDEVALVEHLKQNPMFRVGLDVFEDE-PYM----------KPGLSEM---KNAIVVPHIA 322
           I+   L+  +    +    +D +E+E  Y              L E+   +  +V PHIA
Sbjct: 239 INTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIA 298

Length = 330

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  108 bits (272), Expect = 2e-27
 Identities = 71/218 (32%), Positives = 101/218 (46%), Gaps = 26/218 (11%)

Query: 114 NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173
           N  G   ET AE A +L LA  R++       RA  +D       +  LL+G TV ++GA
Sbjct: 78  NAAGAYAETVAEHALALLLAGLRQLPA---RARATTWDPAEE-DDLVTLLRGSTVAIVGA 133

Query: 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233
           G IG A   ++   F   +I             V   G+     G        A  +DEV
Sbjct: 134 GGIGRALIPLLA-PFGAKVIA------------VNRSGR--PVEGADETV--PADRLDEV 176

Query: 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293
             +AD + L   L   T HL++   LA MK  A LVN +RGP++D  ALV+ L+   +  
Sbjct: 177 WPDADHVVLAAPLTPETRHLVDAAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAG 236

Query: 294 VGLDVFEDEPYMKPG---LSEMKNAIVVPHIASASKVI 328
             LDV + EP   P    L  + NA++ PH+A+  +VI
Sbjct: 237 AALDVTDPEPL--PDGHPLWSLPNALITPHVANTPEVI 272

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score =  105 bits (265), Expect = 6e-26
 Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 25/167 (14%)

Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           L  +T GV+GAG +G    R++  G    ++  D  +           G F+        
Sbjct: 114 LAERTYGVVGAGHVGGRLVRVL-RGLGWKVLVCDPPRQEAEGD-----GDFV-------- 159

Query: 223 TWKRASSMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVNCSRGPVID 278
                 S++ +L E DVISLH  L K     T HL+++  LA+++  A L+N SRG V+D
Sbjct: 160 ------SLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVD 213

Query: 279 EVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
             AL E L         LDV+E EP +   L++    I  PHIA  S
Sbjct: 214 NQALREALLSGEDLDAVLDVWEGEPQIDLELAD-LCTIATPHIAGYS 259

Length = 381

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score =  104 bits (261), Expect = 1e-25
 Identities = 67/242 (27%), Positives = 110/242 (45%), Gaps = 46/242 (19%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            + G + + +    K GI + N  G+ +   AE      L   + + +A +  +      
Sbjct: 67  YSAGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGYILEIYKGLKKAYKNQKEKK--- 123

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI----------YYDLYQATR 202
           W  +  +  L  G+T+  +G G IG   A+ + + F M +I          Y+D      
Sbjct: 124 WKMDSSLLEL-YGKTILFLGTGSIGQEIAKRL-KAFGMKVIGVNTSGRDVEYFD------ 175

Query: 203 LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLAT 261
            + +            E          +DEVL+EAD V+++ P L + T+HL ++     
Sbjct: 176 -KCY---------PLEE----------LDEVLKEADIVVNVLP-LTEETHHLFDEAFFEQ 214

Query: 262 MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVP 319
           MKK A+ +N  RGP +DE AL+E LK   +    LDVFE+EP  K  P L ++ N ++ P
Sbjct: 215 MKKGALFINVGRGPSVDEDALIEALKNKQIRGAALDVFEEEPLPKDSP-LWDLDNVLITP 273

Query: 320 HI 321
           HI
Sbjct: 274 HI 275

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  102 bits (257), Expect = 5e-25
 Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 21/236 (8%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLT---ETTAELAASLSLAAARRIVEADEFMRAGLYD 151
           VG   VDV+AA K+GI V   P   T    + AE+A  L L   R+  E    ++A    
Sbjct: 91  VGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLG 150

Query: 152 GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR---LEKFVT 208
              P   +G+ L G+TV ++G G IG   A+ +   F + L+      ATR     +   
Sbjct: 151 E--P---IGDTLFGKTVFILGYGAIGIELAKRL-RPFGVKLL------ATRRSWTSEPED 198

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                     +          + E   EAD++ L   L K T  ++N E L++MKK A+L
Sbjct: 199 GLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALL 258

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIA 322
           VN +RG ++D  A++  L+   +  + +DV   EP+  P   + +  N I+ PH+A
Sbjct: 259 VNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPF-DPDDPILKHPNVIITPHVA 313

Length = 347

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score =  100 bits (251), Expect = 3e-24
 Identities = 72/235 (30%), Positives = 112/235 (47%), Gaps = 23/235 (9%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AAN  GI V    G    + AE    + L   R  V   E    G   GW 
Sbjct: 93  IGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILILVRNYVPGHEQAIEG---GWN 149

Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V     L+G+TVG +GAGRIG    R + + F ++L+YYD ++             
Sbjct: 150 VADVVKRAYDLEGKTVGTVGAGRIGLRVLRRL-KPFDVHLLYYDRHR------------- 195

Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
            L    E+ +   R + +++++ + DV++++  L   T  L NKE L+ MKK A LVN +
Sbjct: 196 -LPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKKGAYLVNTA 254

Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 325
           RG + D  A+ E L+   +     DV+  +P  K  P    M N  + PHI+  +
Sbjct: 255 RGKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHP-WRTMPNNAMTPHISGTT 308

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score = 99.7 bits (249), Expect = 1e-23
 Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 35/241 (14%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AA+++GI V    G  + + AE    + LA  R    +      G   GW 
Sbjct: 123 IGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEG---GW- 178

Query: 155 PNLF-VGNL---LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
            N+    +    L+G TVG++GAGRIG A  R + + F + L Y D ++           
Sbjct: 179 -NIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRL-KPFDVKLHYTDRHR----------- 225

Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
              L    EQ +      S D ++   DV+++H  L   T HL + + L+ MK+ + LVN
Sbjct: 226 ---LPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVN 282

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHIASA 324
            +RG ++D  A+V  L+   +     DV+       D P+       M    + PHI+  
Sbjct: 283 TARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRT-----MPRNGMTPHISGT 337

Query: 325 S 325
           +
Sbjct: 338 T 338

Length = 385

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 94.6 bits (236), Expect = 2e-22
 Identities = 69/224 (30%), Positives = 98/224 (43%), Gaps = 37/224 (16%)

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG-WLPNLFVGNLLKGQT 167
           G+ + N  GV   +TAELA +L LA+ R +         G ++    P+L        + 
Sbjct: 81  GVTLCNARGVHDASTAELAVALILASLRGLPRFVRAQARGRWEPRRTPSL------ADRR 134

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQPVTW 224
           V ++G G IG A  R                   RL  F   VT   +  +  GEQ    
Sbjct: 135 VLIVGYGSIGRAIER-------------------RLAPFEVRVTRVARTARP-GEQVHGI 174

Query: 225 KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE 284
                +  +L EADV+ L   L   T  L++ E LA M   A+LVN +RGPV+D  ALV 
Sbjct: 175 ---DELPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDALVA 231

Query: 285 HLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASK 326
            L    + R  LDV + EP + PG  L      ++ PH+  A+ 
Sbjct: 232 ELASGRL-RAALDVTDPEP-LPPGHPLWSAPGVLITPHVGGATP 273

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 83.0 bits (205), Expect = 4e-18
 Identities = 53/235 (22%), Positives = 112/235 (47%), Gaps = 28/235 (11%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K   +++ G +++DV+   +  + + +  G  + + AE A +L LA A+ I E +  M+ 
Sbjct: 51  KMIQSLSAGVDHIDVSGIPE-NVVLCSNAGAYSISVAEHAFALLLAWAKNICENNYNMKN 109

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G +    P      LL  +++G++G G IG   A ++ + F MN+  Y     TR     
Sbjct: 110 GNFKQ-SPT----KLLYNKSLGILGYGGIGRRVA-LLAKAFGMNIYAY-----TR----- 153

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
           +     + +   +P         +++++++D + +   L   T  +IN + L+  +K   
Sbjct: 154 SYVNDGISSIYMEP---------EDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLA 204

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322
           ++N +R  V+D+  ++  L+ +       DV+ +EP +    +   N I+ PH+A
Sbjct: 205 IINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITE--TNPDNVILSPHVA 257

Length = 303

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 80.7 bits (199), Expect = 5e-17
 Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 41/241 (17%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRI------VEADEFMRAG 148
           +G +++D+ AA   G+ V    G    + AE      L   R        V + E+  AG
Sbjct: 130 IGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAG 189

Query: 149 L----YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQATRL 203
           +    YD           L+G+TVG +GAGRIG    + + + F  NL+Y+D L     L
Sbjct: 190 IAYRAYD-----------LEGKTVGTVGAGRIGRLLLQRL-KPFNCNLLYHDRLKMDPEL 237

Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
           EK   A               K    +D +L + DV+ ++  L + T  + NKER+A MK
Sbjct: 238 EKETGA---------------KFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMK 282

Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHI 321
           K  ++VN +RG ++D  A+ +      +   G DV+  +P  K  P    M N  + PHI
Sbjct: 283 KGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRY-MPNHAMTPHI 341

Query: 322 A 322
           +
Sbjct: 342 S 342

Length = 386

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 75.6 bits (187), Expect = 1e-15
 Identities = 55/215 (25%), Positives = 85/215 (39%), Gaps = 37/215 (17%)

Query: 119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGS 178
           L +  AE   +  L   R +       R G+   W P          + VGV+G G +G+
Sbjct: 91  LAQGMAEYVLAAVLRLHRDMDRYAAQQRRGV---WKPLPQR--PAAERRVGVLGLGELGA 145

Query: 179 AYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237
           A AR +   GF                  V+ + +  K + E    +     +D  L + 
Sbjct: 146 AVARRLAALGFP-----------------VSGWSRSPK-DIEGVTCFHGEEGLDAFLAQT 187

Query: 238 DV-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296
           D+ + L P+  +T   ++N E LA + + A L+N  RGP + E  L+  L    +    L
Sbjct: 188 DILVCLLPLTPETR-GILNAELLARLPRGAALINVGRGPHLVEADLLAALDSGHLSGAVL 246

Query: 297 DVFEDEPYMKPGLSE------MKNAIVVPHIASAS 325
           DVFE EP     L             V PHIA+ +
Sbjct: 247 DVFEQEP-----LPADHPLWRHPRVTVTPHIAAIT 276

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 73.6 bits (181), Expect = 8e-15
 Identities = 66/213 (30%), Positives = 89/213 (41%), Gaps = 35/213 (16%)

Query: 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWL-------PNLFVGNLLKGQTVGVIGAG 174
           T AE   +L LAA RR+ E  E  R   + G L       P   +  LL G  V + G G
Sbjct: 94  TVAEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLL-GARVLIWGFG 152

Query: 175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ---PVTWKRASSMD 231
            IG   A ++                T L   VT   +   + GE+   PV       + 
Sbjct: 153 SIGQRLAPLL----------------TALGARVTGVAR---SAGERAGFPVV--AEDELP 191

Query: 232 EVLREADV-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290
           E+L E DV + + P    T  H ++ E LA + K A +VN  RG  +DE ALV  L+   
Sbjct: 192 ELLPETDVLVMILPATPSTA-HALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGR 250

Query: 291 MFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIA 322
           +    LDV   EP      L +  N I+ PH A
Sbjct: 251 LGGAALDVTATEPLPASSPLWDAPNLILTPHAA 283

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 73.4 bits (180), Expect = 1e-14
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 25/167 (14%)

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
           G  L  +TVG++G G +G      + E   +  +  D  +A R ++     G F      
Sbjct: 111 GFSLHDRTVGIVGVGNVGRRLQARL-EALGIKTLLCDPPRADRGDE-----GDF------ 158

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDK----TTYHLINKERLATMKKEAILVNCSRGP 275
                    S+DE+++EAD+++ H  L K     T HL +++ + ++K  AIL+N  RG 
Sbjct: 159 --------RSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGA 210

Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322
           V+D  AL+  L +     V LDV+E EP +   L + K  I  PHIA
Sbjct: 211 VVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLK-KVDIGTPHIA 256

Length = 378

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 71.2 bits (175), Expect = 6e-14
 Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 23/232 (9%)

Query: 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG 169
           + +    G+     AE      L  +   ++  E  +   +        V + + G+ VG
Sbjct: 79  VPLCTASGIHGPQIAEWVIGTWLVLSHHFLQYIELQKEQTWGRRQEAYSVEDSV-GKRVG 137

Query: 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK------FVTAYGQFLKANGEQPVT 223
           ++G G IG   AR+      M +  Y        E        V   G     +G  P  
Sbjct: 138 ILGYGSIGRQTARLAQ-ALGMEVYAYTRSPRPTPESRKDDGYIVPGTGD---PDGSIPSA 193

Query: 224 W---KRASSMDEVLREA-D--VISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPV 276
           W      +S+ E LR+  D  V+SL P+   T  HL+  E    + K++  + N +RG +
Sbjct: 194 WFSGTDKASLHEFLRQDLDLLVVSL-PLTPATK-HLLGAEEFEILAKRKTFVSNIARGSL 251

Query: 277 IDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASK 326
           +D  ALV  L+   +    LDV + EP +     L    N I+ PH++  ++
Sbjct: 252 VDTDALVAALESGQIRGAALDVTDPEP-LPADHPLWSAPNVIITPHVSWQTQ 302

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 68.1 bits (167), Expect = 5e-13
 Identities = 56/191 (29%), Positives = 82/191 (42%), Gaps = 32/191 (16%)

Query: 117 GVLTETTAELAASLSLAAARRI----VEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
           GV  E  AE   +  LAAA+R+    V+  E         W         L G T+G++G
Sbjct: 93  GVAAEAIAEFVLAAILAAAKRLPEIWVKGAEQ--------WRRE--PLGSLAGSTLGIVG 142

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG A AR  +    M ++      A R        G+     G +      A+ + E
Sbjct: 143 FGAIGQALARRAL-ALGMRVL------ALRRS------GRPSDVPGVE-----AAADLAE 184

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
           +   +D + L   L   T HLIN + LA  K    L+N +RG ++D+ AL+E L    + 
Sbjct: 185 LFARSDHLVLAAPLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRIS 244

Query: 293 RVGLDVFEDEP 303
              LDV + EP
Sbjct: 245 LASLDVTDPEP 255

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 66.1 bits (161), Expect = 3e-12
 Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 30/212 (14%)

Query: 80  AALSRAGGKAFSNMAVGYNNVDVNAAN-KYGIAVGNTPGVLTETT---AELAASLSLAAA 135
           A + + G +      +G ++ D+  A  + G+      GV        +  A  LS+   
Sbjct: 81  ALIQKLGDRLLFTYTIGADHRDLTEALARAGLTAIAVEGVELPLLTSNSIGAGELSVQFI 140

Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
            R +E  +  R G              + G+TV V+GAG +G   A+M+  G    ++  
Sbjct: 141 ARFLEVQQPGRLGGAPD----------VAGKTVVVVGAGVVGKEAAQMLR-GLGAQVLIT 189

Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH-PVLDKTTYHLI 254
           D+      +               + +  K    ++E L EADVI     +  K    L+
Sbjct: 190 DINVEALEQ--------------LEELGGKNVEELEEALAEADVIVTTTLLPGKRAGILV 235

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
            +E +  MK  +++VN + G V    AL   L
Sbjct: 236 PEELVEQMKPGSVIVNVAVGAVGCVQALHTQL 267

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 48/196 (24%), Positives = 68/196 (34%), Gaps = 44/196 (22%)

Query: 99  NVDVNAANKYGIAVGNT-----PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
           NVD+ AA + GI V         GV+    +EL         R +              W
Sbjct: 85  NVDIAAARENGITVTGIRDYGDEGVVEYVISELI--------RLLHGFGGKQ-------W 129

Query: 154 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 213
                    L G  VG+IG G  G   A  +   F  ++ YY   +    E     Y   
Sbjct: 130 KE---EPRELTGLKVGIIGLGTTGQMIADAL-SFFGADVYYYSRTRKPDAEAKGIRY--- 182

Query: 214 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273
                  P        ++E+L+  DVI     L K    L+ +E    +    IL N S 
Sbjct: 183 ------LP--------LNELLKTVDVICTC--LPKNVI-LLGEEEFELLGDGKILFNTSL 225

Query: 274 GPVIDEVALVEHLKQN 289
           GP  +  AL + LK +
Sbjct: 226 GPSFEVEALKKWLKAS 241

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|240621 cd01620, Ala_dh_like, Alanine dehydrogenase and related dehydrogenases

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 21/112 (18%), Positives = 49/112 (43%), Gaps = 15/112 (13%)

Query: 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT 223
               V +IGAG +G   A++       N++ YD+ +            + ++  G   + 
Sbjct: 161 PPAKVLIIGAGVVGLGAAKIAK-KLGANVLVYDIKEEKL---------KGVETLGGSRLR 210

Query: 224 WKRASSMDEVLREADVI---SLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
           + +   +++ L++ D++    L          LI +E +  MK+ A++V+ +
Sbjct: 211 YSQKEELEKELKQTDILINAILVD--GPRAPILIMEELVGPMKRGAVIVDLA 260

Alanine dehydrogenase/Transhydrogenase, such as the hexameric L-alanine dehydrogenase of Phormidium lapideum, contain 2 Rossmann fold-like domains linked by an alpha helical region. Related proteins include Saccharopine Dehydrogenase (SDH), bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme, N(5)-(carboxyethyl)ornithine synthase, and Rubrum transdehydrogenase. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyrucate to L-alanine via reductive amination. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matirx side. DI contains 2 domains with Rossmann folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with one dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than classical Rossmann domains. Length = 317

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	328
PLN02306	386	hydroxypyruvate reductase	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PLN02928	347	oxidoreductase family protein	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	100.0
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.9
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.85
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.72
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.72
PLN02494	477	adenosylhomocysteinase	99.71
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.67
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.55
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.53
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.42
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.3
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.25
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.25
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.23
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.22
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.16
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.15
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.11
PLN02712	667	arogenate dehydrogenase	99.07
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.03
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.98
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	98.95
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.92
PLN02256	304	arogenate dehydrogenase	98.91
PRK15059	292	tartronate semialdehyde reductase; Provisional	98.89
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.86
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.86
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	98.86
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	98.84
PLN02858	1378	fructose-bisphosphate aldolase	98.83
PLN02858	1378	fructose-bisphosphate aldolase	98.82
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.78
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	98.77
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.77
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.77
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.77
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.76
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.76
PRK08655	437	prephenate dehydrogenase; Provisional	98.76
PRK08818	370	prephenate dehydrogenase; Provisional	98.75
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	98.75
PRK05225	487	ketol-acid reductoisomerase; Validated	98.74
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.74
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.74
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.73
PLN02712	667	arogenate dehydrogenase	98.72
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.71
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.7
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.7
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.67
KOG0409	327	consensus Predicted dehydrogenase [General functio	98.67
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.66
PRK07417	279	arogenate dehydrogenase; Reviewed	98.65
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	98.62
PRK06545	359	prephenate dehydrogenase; Validated	98.62
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.6
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.59
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.58
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.56
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.54
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.52
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.52
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.51
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.5
PLN02688	266	pyrroline-5-carboxylate reductase	98.49
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.47
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.46
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.46
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.44
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.42
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.4
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.39
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.39
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.39
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.38
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.35
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.34
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.32
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.3
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.3
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.28
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.28
PRK08507	275	prephenate dehydrogenase; Validated	98.27
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.26
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.26
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.25
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.24
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.23
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.23
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.22
PRK07680	273	late competence protein ComER; Validated	98.21
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.21
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.2
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.2
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.19
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.18
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.16
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.16
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.16
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.16
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.16
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.15
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	98.15
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.14
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.13
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.12
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.12
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.11
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.11
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.08
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.08
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	98.08
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.06
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.06
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.05
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	98.05
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	98.04
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.04
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.03
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.02
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.02
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.02
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.01
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.0
PLN00203	519	glutamyl-tRNA reductase	97.98
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.98
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.97
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	97.95
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	97.94
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.92
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.91
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.91
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.91
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.89
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.89
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.87
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.86
PRK06141	314	ornithine cyclodeaminase; Validated	97.86
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	97.82
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.8
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.8
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.78
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.78
PRK07340	304	ornithine cyclodeaminase; Validated	97.78
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	97.78
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	97.76
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	97.75
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.71
PRK14982	340	acyl-ACP reductase; Provisional	97.66
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	97.65
PRK08618	325	ornithine cyclodeaminase; Validated	97.63
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.63
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.63
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.6
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.6
PRK06046	326	alanine dehydrogenase; Validated	97.56
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.56
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.55
PRK06823	315	ornithine cyclodeaminase; Validated	97.53
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	97.51
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.47
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.43
PRK06407	301	ornithine cyclodeaminase; Provisional	97.43
PRK06199	379	ornithine cyclodeaminase; Validated	97.42
PRK07589	346	ornithine cyclodeaminase; Validated	97.42
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.4
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.4
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.4
PRK08291	330	ectoine utilization protein EutC; Validated	97.39
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.38
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.38
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.37
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.36
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.35
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.33
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.3
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.25
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.25
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.24
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.24
PTZ00117	319	malate dehydrogenase; Provisional	97.23
PRK09414	445	glutamate dehydrogenase; Provisional	97.23
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.21
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.21
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.21
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	97.19
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.18
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.16
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.14
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.13
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.13
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.12
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.09
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	97.08
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	97.07
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.99
PRK11730	715	fadB multifunctional fatty acid oxidation complex	96.99
PLN02477	410	glutamate dehydrogenase	96.96
PRK01713	334	ornithine carbamoyltransferase; Provisional	96.94
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	96.93
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	96.91
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	96.91
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	96.9
PRK02102	331	ornithine carbamoyltransferase; Validated	96.89
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.88
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.87
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.85
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	96.85
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	96.84
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.84
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.78
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.77
PRK13303	265	L-aspartate dehydrogenase; Provisional	96.75
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.72
PRK00779	304	ornithine carbamoyltransferase; Provisional	96.72
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	96.71
PRK14031	444	glutamate dehydrogenase; Provisional	96.7
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.69
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.65
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	96.64
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.64
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.62
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	96.58
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.55
PRK06223	307	malate dehydrogenase; Reviewed	96.54
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	96.53
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.47
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.47
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.46
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.44
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	96.42
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.42
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	96.39
PLN02342	348	ornithine carbamoyltransferase	96.39
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.37
PRK04284	332	ornithine carbamoyltransferase; Provisional	96.37
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.32
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	96.31
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	96.31
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	96.29
PRK14030	445	glutamate dehydrogenase; Provisional	96.27
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.25
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.25
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.24
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.21
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.21
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.2
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.18
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.17
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.16
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.14
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.13
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.06
PRK10637	457	cysG siroheme synthase; Provisional	96.06
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.06
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.05
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.96
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	95.96
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	95.95
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.93
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.93
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	95.92
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.9
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.86
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	95.81
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.75
PRK08300	302	acetaldehyde dehydrogenase; Validated	95.75
PRK06444	197	prephenate dehydrogenase; Provisional	95.74
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.74
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.73
TIGR00036	266	dapB dihydrodipicolinate reductase.	95.73
PRK12862	763	malic enzyme; Reviewed	95.72
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.72
PRK02255	338	putrescine carbamoyltransferase; Provisional	95.69
PRK11891	429	aspartate carbamoyltransferase; Provisional	95.67
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	95.63
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.63
PRK11579	346	putative oxidoreductase; Provisional	95.62
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	95.62
COG5322	351	Predicted dehydrogenase [General function predicti	95.53
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.51
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.47
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.38
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.33
PRK12861	764	malic enzyme; Reviewed	95.32
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.28
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.27
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.25
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.22
PRK06270	341	homoserine dehydrogenase; Provisional	95.2
PRK09496	453	trkA potassium transporter peripheral membrane com	95.19
COG0281	432	SfcA Malic enzyme [Energy production and conversio	95.17
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	95.1
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.09
PRK14804	311	ornithine carbamoyltransferase; Provisional	95.08
PLN02527	306	aspartate carbamoyltransferase	95.03
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.02
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	94.96
PLN02948	577	phosphoribosylaminoimidazole carboxylase	94.95
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	94.9
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	94.9
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	94.9
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	94.87
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	94.82
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.79
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.78
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	94.78
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.74
PRK09496	453	trkA potassium transporter peripheral membrane com	94.72
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	94.72
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	94.71
PRK10669	558	putative cation:proton antiport protein; Provision	94.66
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.66
PRK08328	231	hypothetical protein; Provisional	94.6
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	94.51
PLN02602	350	lactate dehydrogenase	94.5
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	94.49
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	94.45
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	94.44
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	94.41
PRK06153	393	hypothetical protein; Provisional	94.41
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.4
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	94.33
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.31
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.3
PRK07806	248	short chain dehydrogenase; Provisional	94.2
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	94.19
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	94.17
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.15
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.13
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	94.1
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.1
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	94.09
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	94.08
PRK08192	338	aspartate carbamoyltransferase; Provisional	94.03
COG0673	342	MviM Predicted dehydrogenases and related proteins	94.01
PRK12937	245	short chain dehydrogenase; Provisional	93.92
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	93.89
PRK05086	312	malate dehydrogenase; Provisional	93.82
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	93.81
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	93.8
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	93.73
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.73
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	93.63
PRK06392	326	homoserine dehydrogenase; Provisional	93.61
PRK04148	134	hypothetical protein; Provisional	93.61
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	93.59
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	93.59
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	93.49
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	93.49
PRK08223	287	hypothetical protein; Validated	93.48
COG2344	211	AT-rich DNA-binding protein [General function pred	93.41
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.39
PRK10206	344	putative oxidoreductase; Provisional	93.37
PRK03562	621	glutathione-regulated potassium-efflux system prot	93.36
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	93.36
PRK06701	290	short chain dehydrogenase; Provisional	93.32
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	93.31
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	93.26
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	93.22
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	93.2
PRK15076	431	alpha-galactosidase; Provisional	93.17
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	93.15
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	93.12
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	93.11
PRK07411	390	hypothetical protein; Validated	93.04
PRK06349	426	homoserine dehydrogenase; Provisional	92.99
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	92.98
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	92.96
PLN00106	323	malate dehydrogenase	92.89
PRK06128	300	oxidoreductase; Provisional	92.77
PLN02586	360	probable cinnamyl alcohol dehydrogenase	92.68
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	92.64
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	92.63
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	92.62
PRK07877	722	hypothetical protein; Provisional	92.53
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	92.52
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	92.46
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	92.38
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	92.33
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	92.3
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.27
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	92.24
PRK12742	237	oxidoreductase; Provisional	92.24
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	92.24
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	92.22
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	92.2
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	92.19
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	92.16
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	92.14
PRK09189	240	uroporphyrinogen-III synthase; Validated	92.07
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	92.0
PTZ00325	321	malate dehydrogenase; Provisional	91.99
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	91.88
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	91.76
PLN02178	375	cinnamyl-alcohol dehydrogenase	91.73
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	91.66
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	91.66
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	91.62
PRK07523	255	gluconate 5-dehydrogenase; Provisional	91.6
PLN02740	381	Alcohol dehydrogenase-like	91.58
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	91.54
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	91.33
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	91.29
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	91.27
PLN02214	342	cinnamoyl-CoA reductase	91.22
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	91.19
PTZ00188	506	adrenodoxin reductase; Provisional	91.16
PLN02514	357	cinnamyl-alcohol dehydrogenase	91.04
PRK13529	563	malate dehydrogenase; Provisional	91.02
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	90.99
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	90.92
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	90.89
PLN00112	444	malate dehydrogenase (NADP); Provisional	90.71
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	90.71
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	90.6
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	90.52
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	90.52
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	90.43
PRK08324	681	short chain dehydrogenase; Validated	90.31
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	90.27
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	90.27
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	90.21
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	90.09
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	90.08
PLN03209	576	translocon at the inner envelope of chloroplast su	90.08
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	89.97
PRK10537	393	voltage-gated potassium channel; Provisional	89.96
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	89.95
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	89.82
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	89.73
PRK06172	253	short chain dehydrogenase; Provisional	89.73
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.64
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.59
PRK06114	254	short chain dehydrogenase; Provisional	89.58
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	89.56
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.55
PRK10083	339	putative oxidoreductase; Provisional	89.53
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	89.43
PRK08265	261	short chain dehydrogenase; Provisional	89.33
PRK05866	293	short chain dehydrogenase; Provisional	89.32
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	89.26
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.24
PTZ00317	559	NADP-dependent malic enzyme; Provisional	89.19
PRK07326	237	short chain dehydrogenase; Provisional	89.18
PRK08374	336	homoserine dehydrogenase; Provisional	89.11
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	89.07
PLN03129	581	NADP-dependent malic enzyme; Provisional	89.04
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	89.02
PRK06196	315	oxidoreductase; Provisional	88.93
PRK06841	255	short chain dehydrogenase; Provisional	88.87
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.87
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	88.87
PRK12747	252	short chain dehydrogenase; Provisional	88.84
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	88.78
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	88.7
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	88.68
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	88.65
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	88.62
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	88.61
PRK07904	253	short chain dehydrogenase; Provisional	88.55
PRK14851	679	hypothetical protein; Provisional	88.5
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	88.42
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	88.41
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	88.34
PLN02427	386	UDP-apiose/xylose synthase	88.31
PLN02827	378	Alcohol dehydrogenase-like	88.1
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.05
PRK07825	273	short chain dehydrogenase; Provisional	88.05
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	88.03
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	88.01
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	87.98
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	87.97
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	87.97
PRK05928	249	hemD uroporphyrinogen-III synthase; Reviewed	87.94
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	87.89
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	87.89

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=6e-77  Score=574.29  Aligned_cols=326  Identities=94%  Similarity=1.420  Sum_probs=278.4

Q ss_pred             CCCceeEEEeCCCCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHH
Q 020301            1 MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFA   80 (328)
Q Consensus         1 ~~~~~~~~~~~~~~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~   80 (328)
                      |+||++|+|.+|+++++|+++.++++....+.|++.+++++.....+...+.+++.+.+.+++|++++...+++++++++
T Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~   80 (386)
T PLN02306          1 MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFS   80 (386)
T ss_pred             CCCCceeEeeCCCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHH
Confidence            89999999999999999999999886434677877667776433223346788998887546999998877789999999


Q ss_pred             HhhccCCceEEEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccc
Q 020301           81 ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG  160 (328)
Q Consensus        81 ~~~~l~~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~  160 (328)
                      +++++++|+|++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.+|.+....|
T Consensus        81 ~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g  160 (386)
T PLN02306         81 ALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVG  160 (386)
T ss_pred             hCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCC
Confidence            99987779999999999999999999999999999999999999999999999999999999999999998886544457


Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .+|.|||+||||+|+||+++|++++++|||+|++|||+.....+.+...|+..++..+..+..+....+|+|++++||+|
T Consensus       161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV  240 (386)
T PLN02306        161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI  240 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEE
Confidence            89999999999999999999999634999999999998753322211112111111111111122235899999999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH  320 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPH  320 (328)
                      ++|+|+|++|++|||++.|++||+|++|||+|||++||++||++||++|+|+|||||||++||++++|||++|||++|||
T Consensus       241 ~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPH  320 (386)
T PLN02306        241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPH  320 (386)
T ss_pred             EEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCc
Confidence            99999999999999999999999999999999999999999999999999999999999999988889999999999999


Q ss_pred             CCCCCc
Q 020301          321 IASASK  326 (328)
Q Consensus       321 ia~~t~  326 (328)
                      +||+|.
T Consensus       321 iag~T~  326 (386)
T PLN02306        321 IASASK  326 (386)
T ss_pred             cccCcH
Confidence            999984

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=4.7e-72  Score=528.87  Aligned_cols=286  Identities=37%  Similarity=0.521  Sum_probs=250.2

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEc
Q 020301           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (328)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (328)
                      ++++++++.++.+..+ +.+... ..+++..  ....+.+++.+.+. ++|++++ +.+++++++++.+++|  |+|++.
T Consensus         2 ~~~~vl~~~~~~~~~~-~~l~~~-~~~~~~~--~~~~~~~~l~~~~~-~~d~~~~-~~~~v~~~~l~~~~~L--k~I~~~   73 (324)
T COG0111           2 MMIKVLVTDPLAPDAL-EELLAA-YDVEVPD--GPDLDEEELLEALA-DADALIV-SVTPVTEEVLAAAPNL--KAIGRA   73 (324)
T ss_pred             CcceeeccCccCHHHH-HHHHhc-ccccccc--ccccchHHHHhhcc-cCcEEEE-ecCCCCHHHHhhCCCc--eEEEEc
Confidence            5788999999887654 445443 3333322  22345677777787 7999988 6789999999999987  999999


Q ss_pred             cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEec
Q 020301           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (328)
Q Consensus        94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~  173 (328)
                      |+|+||||+++++++||.|+|+|+.|+.+||||++++||+++|+++.+++.+++|.|+.   ..+.|.+|+|||+||||+
T Consensus        74 g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~---~~~~g~el~gkTvGIiG~  150 (324)
T COG0111          74 GAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDR---KAFRGTELAGKTVGIIGL  150 (324)
T ss_pred             cccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccc---cccccccccCCEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999998864   335678999999999999


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhcc
Q 020301          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (328)
Q Consensus       174 G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~l  253 (328)
                      |+||+.+|+++ ++|||+|++|||+.....+.               ..+.....+|+++|++||||++|+|+|++|+||
T Consensus       151 G~IG~~va~~l-~afgm~v~~~d~~~~~~~~~---------------~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~  214 (324)
T COG0111         151 GRIGRAVAKRL-KAFGMKVIGYDPYSPRERAG---------------VDGVVGVDSLDELLAEADILTLHLPLTPETRGL  214 (324)
T ss_pred             CHHHHHHHHHH-HhCCCeEEEECCCCchhhhc---------------cccceecccHHHHHhhCCEEEEcCCCCcchhcc
Confidence            99999999996 89999999999976542211               112234578999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCC-CCcccCCCeEEcCCCCCCCc
Q 020301          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       254 i~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~  326 (328)
                      ||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++ +|||++|||++||||||+|.
T Consensus       215 i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~  288 (324)
T COG0111         215 INAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTD  288 (324)
T ss_pred             cCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCH
Confidence            99999999999999999999999999999999999999999999999999876 69999999999999999996

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=1.6e-70  Score=519.88  Aligned_cols=289  Identities=34%  Similarity=0.523  Sum_probs=249.2

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEc
Q 020301           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (328)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (328)
                      +++||+++.++++ ...+.|++. +++..... ....+.+++.+.+. ++|++++.. .++++++++++|+|  |+|++.
T Consensus         1 ~~~~vl~~~~~~~-~~~~~l~~~-~~v~~~~~-~~~~~~~~~~~~~~-~ad~li~~~-~~~~~~~l~~~p~L--k~I~~~   73 (323)
T PRK15409          1 MKPSVILYKALPD-DLLQRLEEH-FTVTQVAN-LSPETVEQHAAAFA-EAEGLLGSG-EKVDAALLEKMPKL--RAASTI   73 (323)
T ss_pred             CCceEEEeCCCCH-HHHHHHHhc-CcEEEcCC-CCCCCHHHHHHHhc-CCeEEEEcC-CCCCHHHHhhCCCC--eEEEEC
Confidence            4688999998865 345677654 45543321 12346678888887 799998764 47999999999988  999999


Q ss_pred             cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEec
Q 020301           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (328)
Q Consensus        94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~  173 (328)
                      |+|+|+||+++|+++||.|+|+||+++++||||++++||+++|++..+++.+++|.|..+......|.+|+|||+||||+
T Consensus        74 g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~  153 (323)
T PRK15409         74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGM  153 (323)
T ss_pred             ceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcc
Confidence            99999999999999999999999999999999999999999999999999999999864422223578999999999999


Q ss_pred             CHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhc
Q 020301          174 GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (328)
Q Consensus       174 G~IG~~vA~~l~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~  252 (328)
                      |+||+.+|+++ + +|||+|++|||+.......   .            .+. .+.++++++++||+|++|||+|++|++
T Consensus       154 G~IG~~va~~l-~~~fgm~V~~~~~~~~~~~~~---~------------~~~-~~~~l~ell~~sDvv~lh~plt~~T~~  216 (323)
T PRK15409        154 GRIGMALAQRA-HFGFNMPILYNARRHHKEAEE---R------------FNA-RYCDLDTLLQESDFVCIILPLTDETHH  216 (323)
T ss_pred             cHHHHHHHHHH-HhcCCCEEEEECCCCchhhHH---h------------cCc-EecCHHHHHHhCCEEEEeCCCChHHhh
Confidence            99999999996 7 9999999999975432110   0            011 246999999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccCCCeEEcCCCCCCCc
Q 020301          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       253 li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~  326 (328)
                      |||++.|++||||++|||+|||++||++||++||++|+|+|||||||++||++ ++|||++|||++|||+||.|.
T Consensus       217 li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~  291 (323)
T PRK15409        217 LFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATH  291 (323)
T ss_pred             ccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcH
Confidence            99999999999999999999999999999999999999999999999999985 579999999999999999985

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=1.1e-70  Score=519.13  Aligned_cols=289  Identities=40%  Similarity=0.579  Sum_probs=250.1

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEc
Q 020301           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (328)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (328)
                      +|++++.+.++++. ..+.+.+. +++......... .. ++.+... ++|++++....+++.++++++|+|  |+|+..
T Consensus         1 mk~~~~~~~~~~~~-~~~~l~~~-~~~~~~~~~~~~-~~-~~~~~~~-~~~~i~~~~~~~i~~~~l~~~p~L--KlIa~~   73 (324)
T COG1052           1 MKIVVLSTRKLPPE-VLERLKEK-FEVERYEDDLTP-DT-ELAERLK-DADAVITFVNDRIDAEVLEKLPGL--KLIATR   73 (324)
T ss_pred             CCcEEEecCcCCHH-HHHHhhcc-EEEEEeccCCcc-ch-HHHHHhc-CCcEEEEcCCCCcCHHHHHhCCCc--EEEEEe
Confidence            35668888888875 35666654 666654432122 22 5566665 799999988889999999999987  999999


Q ss_pred             cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCC-CCcccccccCCCEEEEEe
Q 020301           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL-PNLFVGNLLKGQTVGVIG  172 (328)
Q Consensus        94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~-~~~~~~~~l~g~tvgIiG  172 (328)
                      |+||||||+++|+++||.|+|+|++++++||||++++||++.|++.++++++|+|.|..|. .....+.+++|||+||||
T Consensus        74 ~~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG  153 (324)
T COG1052          74 SAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIG  153 (324)
T ss_pred             ccccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEEC
Confidence            9999999999999999999999999999999999999999999999999999999998663 333567899999999999


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhc
Q 020301          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (328)
Q Consensus       173 ~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~  252 (328)
                      +|+||+++|+++ ++|||+|+||||++.+..++.               ..+ .+.+++|++++||+|++|||+|++|+|
T Consensus       154 ~GrIG~avA~r~-~~Fgm~v~y~~~~~~~~~~~~---------------~~~-~y~~l~ell~~sDii~l~~Plt~~T~h  216 (324)
T COG1052         154 LGRIGQAVARRL-KGFGMKVLYYDRSPNPEAEKE---------------LGA-RYVDLDELLAESDIISLHCPLTPETRH  216 (324)
T ss_pred             CCHHHHHHHHHH-hcCCCEEEEECCCCChHHHhh---------------cCc-eeccHHHHHHhCCEEEEeCCCChHHhh
Confidence            999999999996 799999999999976332211               111 345699999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccCCC---eEEcCCCCCCCc
Q 020301          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKN---AIVVPHIASASK  326 (328)
Q Consensus       253 li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~n---vilTPHia~~t~  326 (328)
                      |||++.|++||+|++|||+|||++||++||++||++|+|+|||||||++||.+ ++||++++|   |++|||+||+|.
T Consensus       217 Lin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~  294 (324)
T COG1052         217 LINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATE  294 (324)
T ss_pred             hcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccH
Confidence            99999999999999999999999999999999999999999999999999985 678888777   999999999985

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=5.9e-69  Score=507.40  Aligned_cols=279  Identities=29%  Similarity=0.448  Sum_probs=237.8

Q ss_pred             EEEEeCC--CCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEcc
Q 020301           17 RVVSTKP--MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (328)
Q Consensus        17 ~vlv~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g   94 (328)
                      ||++..+  +++ ...+.|++.+ ++....  .  .+++++.+.+. ++|++++. ..++++++++++|+|  |+|++.|
T Consensus         2 ki~~~~~~~~~~-~~~~~l~~~~-~~~~~~--~--~~~~~~~~~~~-~~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~   71 (311)
T PRK08410          2 KIVILDAKTLGD-KDLSVFEEFG-DFQIYP--T--TSPEEVIERIK-DANIIITN-KVVIDKEVLSQLPNL--KLICITA   71 (311)
T ss_pred             eEEEEecCCCCh-hhHHHHhhCc-eEEEeC--C--CCHHHHHHHhC-CCCEEEEC-CCCCCHHHHhhCCCC--eEEEEcc
Confidence            4555544  333 2346676643 554322  1  25678888887 69998876 568999999999987  9999999


Q ss_pred             ccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCc---ccccccCCCEEEEE
Q 020301           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL---FVGNLLKGQTVGVI  171 (328)
Q Consensus        95 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~---~~~~~l~g~tvgIi  171 (328)
                      +|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..+....   ..+++|+|||+|||
T Consensus        72 ~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIi  151 (311)
T PRK08410         72 TGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGII  151 (311)
T ss_pred             cccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999986432111   12478999999999


Q ss_pred             ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhh
Q 020301          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (328)
Q Consensus       172 G~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~  251 (328)
                      |+|+||+++|+++ ++|||+|++|||+.....                  ..+ ...+|++++++||+|++|||+|++|+
T Consensus       152 G~G~IG~~vA~~~-~~fgm~V~~~d~~~~~~~------------------~~~-~~~~l~ell~~sDvv~lh~Plt~~T~  211 (311)
T PRK08410        152 GLGTIGKRVAKIA-QAFGAKVVYYSTSGKNKN------------------EEY-ERVSLEELLKTSDIISIHAPLNEKTK  211 (311)
T ss_pred             CCCHHHHHHHHHH-hhcCCEEEEECCCccccc------------------cCc-eeecHHHHhhcCCEEEEeCCCCchhh
Confidence            9999999999996 899999999999743210                  011 24699999999999999999999999


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccC---CCeEEcCCCCCCCc
Q 020301          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEM---KNAIVVPHIASASK  326 (328)
Q Consensus       252 ~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~---~nvilTPHia~~t~  326 (328)
                      |+||++.|++||||++|||+|||++||++||++||++|+|+ ||||||++||++ ++|||++   |||++|||+||+|.
T Consensus       212 ~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~  289 (311)
T PRK08410        212 NLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASK  289 (311)
T ss_pred             cccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCH
Confidence            99999999999999999999999999999999999999999 999999999986 4799987   89999999999984

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=4.4e-69  Score=493.34  Aligned_cols=283  Identities=34%  Similarity=0.516  Sum_probs=255.5

Q ss_pred             EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEcccc
Q 020301           17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG   96 (328)
Q Consensus        17 ~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G   96 (328)
                      +||+++++... .++.|++.+.++++..    ..+.||+...+. ++|++++++.+++++++|+...+ ++|+|.+.|+|
T Consensus         8 ~il~~e~~~~~-~~~~l~~~g~~v~~~~----~~~~eel~~~i~-~~~aviVrs~tkvtadvl~aa~~-~lkvVgrag~G   80 (406)
T KOG0068|consen    8 KILVAESLDQA-CIEILKDNGYQVEFKK----NLSLEELIEKIK-DCDALIVRSKTKVTADVLEAAAG-GLKVVGRAGIG   80 (406)
T ss_pred             eEEEecccchH-HHHHHHhcCceEEEec----cCCHHHHHHHhc-cCCEEEEEeCCeecHHHHHhhcC-CeEEEEecccC
Confidence            79999999875 5789999998887543    246789999998 79999999999999999985433 45999999999


Q ss_pred             CCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHH
Q 020301           97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI  176 (328)
Q Consensus        97 ~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~I  176 (328)
                      +||||+++|.++||.|.|+|.+|+.++||++++++++++|++++.+..+|+|+|+.   ..+.|.+|+|||+||+|+|+|
T Consensus        81 ~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr---~~~~G~el~GKTLgvlG~GrI  157 (406)
T KOG0068|consen   81 VDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNR---VKYLGWELRGKTLGVLGLGRI  157 (406)
T ss_pred             ccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceee---cceeeeEEeccEEEEeecccc
Confidence            99999999999999999999999999999999999999999999999999998753   457899999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccH
Q 020301          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (328)
Q Consensus       177 G~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~  256 (328)
                      |+++|+++ ++|||+|++|||.......+          ..|.      ...+++|++..||||++|||+||+|++|+|.
T Consensus       158 GseVA~r~-k~~gm~vI~~dpi~~~~~~~----------a~gv------q~vsl~Eil~~ADFitlH~PLtP~T~~lin~  220 (406)
T KOG0068|consen  158 GSEVAVRA-KAMGMHVIGYDPITPMALAE----------AFGV------QLVSLEEILPKADFITLHVPLTPSTEKLLND  220 (406)
T ss_pred             hHHHHHHH-HhcCceEEeecCCCchHHHH----------hccc------eeeeHHHHHhhcCEEEEccCCCcchhhccCH
Confidence            99999996 89999999999987543211          1121      3479999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC---CCCcccCCCeEEcCCCCCCCc
Q 020301          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM---KPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       257 ~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~---~~~L~~~~nvilTPHia~~t~  326 (328)
                      +.|++||+|..+||+|||++||+.||++||++|+++|||+|||+.||+.   ++.|.++|||++|||+|++|.
T Consensus       221 ~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~  293 (406)
T KOG0068|consen  221 ETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTE  293 (406)
T ss_pred             HHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchH
Confidence            9999999999999999999999999999999999999999999999986   468999999999999999984

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=4.7e-68  Score=502.49  Aligned_cols=267  Identities=30%  Similarity=0.373  Sum_probs=233.5

Q ss_pred             HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhHHHhCC
Q 020301           30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG  109 (328)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d~id~~~~~~~g  109 (328)
                      .+.|++...++....    ..+.+++.+.+. ++|++++. ..++++++++++|+|  |+|++.|+|+|+||++++.++|
T Consensus        18 ~~~l~~~~~~~~~~~----~~~~~~~~~~~~-~~d~~i~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~g   89 (317)
T PRK06487         18 LSPLEQAFDELQLHD----ATTPEQVAERLR-GAQVAISN-KVALDAAALAAAPQL--KLILVAATGTNNVDLAAARERG   89 (317)
T ss_pred             hhHHHhhCCeEEEec----CCCHHHHHHHhC-CCeEEEEe-CCCCCHHHHhhCCCC--eEEEEcCccccccCHHHHHHCC
Confidence            355665444554432    125678888887 69988875 457999999999987  9999999999999999999999


Q ss_pred             ceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCC---cccccccCCCEEEEEecCHHHHHHHHHHHh
Q 020301          110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (328)
Q Consensus       110 I~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~---~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~  186 (328)
                      |.|+|+||+++.+||||++++||+++|++..+++.+++|.|..|...   .+.+++|.|||+||||+|+||+++|+++ +
T Consensus        90 I~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l-~  168 (317)
T PRK06487         90 ITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA-E  168 (317)
T ss_pred             CEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH-h
Confidence            99999999999999999999999999999999999999999755321   1235689999999999999999999996 8


Q ss_pred             cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCc
Q 020301          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA  266 (328)
Q Consensus       187 ~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga  266 (328)
                      +|||+|++||++....               .      ....+|++++++||+|++|||+|++|+|+||++.|++||+|+
T Consensus       169 ~fgm~V~~~~~~~~~~---------------~------~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga  227 (317)
T PRK06487        169 AFGMRVLIGQLPGRPA---------------R------PDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGA  227 (317)
T ss_pred             hCCCEEEEECCCCCcc---------------c------ccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCe
Confidence            9999999999864220               0      123589999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCC-CCccc--CCCeEEcCCCCCCCc
Q 020301          267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSE--MKNAIVVPHIASASK  326 (328)
Q Consensus       267 ~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~--~~nvilTPHia~~t~  326 (328)
                      +|||+|||++||++||++||++|+|+||+||||++||++. +|||+  +|||++|||+||+|.
T Consensus       228 ~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~  290 (317)
T PRK06487        228 LLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSR  290 (317)
T ss_pred             EEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCH
Confidence            9999999999999999999999999999999999999864 79995  899999999999984

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=4.8e-68  Score=517.65  Aligned_cols=289  Identities=29%  Similarity=0.409  Sum_probs=253.6

Q ss_pred             EeCCCCCeEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCC
Q 020301            9 VWNPNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG   87 (328)
Q Consensus         9 ~~~~~~~~~vlv~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~   87 (328)
                      |+-|.++|||+++.++++. ..+.|++.++ ++....   ...+++++.+.+. ++|+++++...++++++++++|+|  
T Consensus         4 ~~~~~~~~~ili~~~~~~~-~~~~l~~~~~~~v~~~~---~~~~~~~~~~~~~-~~d~l~~~~~~~~~~~~l~~~~~L--   76 (409)
T PRK11790          4 VSLPKDKIKFLLLEGVHQS-AVEVLRAAGYTNIEYHK---GALDEEELIEAIK-DAHFIGIRSRTQLTEEVLAAAEKL--   76 (409)
T ss_pred             CCCCCCCeEEEEECCCCHH-HHHHHHhcCCceEEECC---CCCCHHHHHHHcC-CCCEEEEeCCCCCCHHHHhhCCCC--
Confidence            4567888999999887653 4577777666 665432   2346788888887 799998877678999999999987  


Q ss_pred             ceEEEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCE
Q 020301           88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT  167 (328)
Q Consensus        88 k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~t  167 (328)
                      |+|++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..+   ...+.+|.|||
T Consensus        77 k~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~---~~~~~~L~gkt  153 (409)
T PRK11790         77 VAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKS---AAGSFEVRGKT  153 (409)
T ss_pred             eEEEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCccccc---ccCcccCCCCE
Confidence            999999999999999999999999999999999999999999999999999999999999988643   23468999999


Q ss_pred             EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCC
Q 020301          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  247 (328)
Q Consensus       168 vgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt  247 (328)
                      +||||+|+||+.+|+++ ++|||+|++|||+.....              +    ......+|+|++++||+|++|||+|
T Consensus       154 vGIiG~G~IG~~vA~~~-~~fGm~V~~~d~~~~~~~--------------~----~~~~~~~l~ell~~sDiVslh~Plt  214 (409)
T PRK11790        154 LGIVGYGHIGTQLSVLA-ESLGMRVYFYDIEDKLPL--------------G----NARQVGSLEELLAQSDVVSLHVPET  214 (409)
T ss_pred             EEEECCCHHHHHHHHHH-HHCCCEEEEECCCccccc--------------C----CceecCCHHHHHhhCCEEEEcCCCC
Confidence            99999999999999996 799999999998643210              0    1123458999999999999999999


Q ss_pred             hhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCC-----CCcccCCCeEEcCCCC
Q 020301          248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-----PGLSEMKNAIVVPHIA  322 (328)
Q Consensus       248 ~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-----~~L~~~~nvilTPHia  322 (328)
                      ++|+|+||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++.     +|||++|||++|||+|
T Consensus       215 ~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia  294 (409)
T PRK11790        215 PSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIG  294 (409)
T ss_pred             hHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCC
Confidence            99999999999999999999999999999999999999999999999999999999863     5899999999999999


Q ss_pred             CCCc
Q 020301          323 SASK  326 (328)
Q Consensus       323 ~~t~  326 (328)
                      |+|.
T Consensus       295 ~~t~  298 (409)
T PRK11790        295 GSTQ  298 (409)
T ss_pred             CCHH
Confidence            9984

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=1.1e-67  Score=503.14  Aligned_cols=290  Identities=44%  Similarity=0.682  Sum_probs=250.7

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEc
Q 020301           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (328)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (328)
                      +++||+++.++++ ...+.|++. +++.... .....+.+++.+.+. ++|++++....++++++++++|+|  |+|+++
T Consensus         1 ~~~kil~~~~~~~-~~~~~l~~~-~~~~~~~-~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~p~L--k~I~~~   74 (333)
T PRK13243          1 MKPKVFITREIPE-NGIEMLEEH-FEVEVWE-DEREIPREVLLEKVR-DVDALVTMLSERIDCEVFEAAPRL--RIVANY   74 (333)
T ss_pred             CCceEEEECCCCH-HHHHHHhcC-ceEEEec-CCCCCCHHHHHHHhC-CCcEEEEeCCCCCCHHHHhhCCCC--eEEEec
Confidence            4688999888764 345667654 4554332 122346788888887 799999876668999999999987  999999


Q ss_pred             cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCC----CCCCcccccccCCCEEE
Q 020301           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG----WLPNLFVGNLLKGQTVG  169 (328)
Q Consensus        94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~----w~~~~~~~~~l~g~tvg  169 (328)
                      |+|+|+||+++|+++||.|+|+||+|+.+||||++++||+++|++..+++.+++|.|..    |......|++|+|||+|
T Consensus        75 ~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvg  154 (333)
T PRK13243         75 AVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIG  154 (333)
T ss_pred             CccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999864    22222356899999999


Q ss_pred             EEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChh
Q 020301          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (328)
Q Consensus       170 IiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~  249 (328)
                      |||+|+||+.+|+++ ++|||+|++|||+.......          ..+     . ...++++++++||+|++|+|+|++
T Consensus       155 IiG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~----------~~~-----~-~~~~l~ell~~aDiV~l~lP~t~~  217 (333)
T PRK13243        155 IIGFGRIGQAVARRA-KGFGMRILYYSRTRKPEAEK----------ELG-----A-EYRPLEELLRESDFVSLHVPLTKE  217 (333)
T ss_pred             EECcCHHHHHHHHHH-HHCCCEEEEECCCCChhhHH----------HcC-----C-EecCHHHHHhhCCEEEEeCCCChH
Confidence            999999999999997 79999999999986432110          001     1 235899999999999999999999


Q ss_pred             hhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCCCc
Q 020301          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       250 t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~  326 (328)
                      |+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++++|||++|||++|||+||+|.
T Consensus       218 T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~  294 (333)
T PRK13243        218 TYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATF  294 (333)
T ss_pred             HhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHH
Confidence            99999999999999999999999999999999999999999999999999999998889999999999999999984

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=2e-67  Score=497.35  Aligned_cols=252  Identities=31%  Similarity=0.419  Sum_probs=225.5

Q ss_pred             CCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHH
Q 020301           50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAAS  129 (328)
Q Consensus        50 ~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~  129 (328)
                      .+++++.+.+. ++|++++. ..++++++++++|+|  |+|++.|+|+|+||+++|.++||.|+|+||+++.+||||+++
T Consensus        33 ~~~~~~~~~~~-~~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~  108 (314)
T PRK06932         33 TSAEQTIERAK-DADIVITS-KVLFTRETLAQLPKL--KLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLG  108 (314)
T ss_pred             CChHHHHHHhC-CCcEEEEe-CCCCCHHHHhhCcCC--eEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHH
Confidence            35788888887 69988774 457999999999987  999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcHHHHHHHHHcCCCCCCCCC---cccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH
Q 020301          130 LSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF  206 (328)
Q Consensus       130 ~~L~~~R~~~~~~~~~~~g~w~~w~~~---~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~  206 (328)
                      +||+++|++..+++.+++|.|..+...   ...+++|+|||+||||+|+||+++|+++ ++|||+|++||++....    
T Consensus       109 l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l-~~fg~~V~~~~~~~~~~----  183 (314)
T PRK06932        109 MIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLA-QALGMKVLYAEHKGASV----  183 (314)
T ss_pred             HHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHH-hcCCCEEEEECCCcccc----
Confidence            999999999999999999998643211   1234689999999999999999999996 89999999999764210    


Q ss_pred             HhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 020301          207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (328)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL  286 (328)
                                     . ...+.+|+|++++||+|++|||+|++|+|+||++.|++||||++|||+|||++||++||++||
T Consensus       184 ---------------~-~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL  247 (314)
T PRK06932        184 ---------------C-REGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDAL  247 (314)
T ss_pred             ---------------c-ccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHH
Confidence                           0 012368999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCccEEEEeCCCCCCCC-CCCcc----cCCCeEEcCCCCCCCc
Q 020301          287 KQNPMFRVGLDVFEDEPYM-KPGLS----EMKNAIVVPHIASASK  326 (328)
Q Consensus       287 ~~g~i~gaalDV~~~EP~~-~~~L~----~~~nvilTPHia~~t~  326 (328)
                      ++|+|+||+||||++||++ ++|||    ++|||++|||+||+|.
T Consensus       248 ~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~  292 (314)
T PRK06932        248 ENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASD  292 (314)
T ss_pred             HcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcH
Confidence            9999999999999999985 57898    5999999999999985

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=6.1e-65  Score=489.51  Aligned_cols=277  Identities=22%  Similarity=0.268  Sum_probs=241.0

Q ss_pred             HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecC--CCCccHHHHHHhhccCCceEEEccccCCccChhHHH
Q 020301           29 WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (328)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~--~~~~~~~~l~~~~~l~~k~i~~~g~G~d~id~~~~~  106 (328)
                      ..+.|++.++++.+...  ...+.+++.+.+. ++|++|+..  +.++++++++++|+|  |+|++.|+|+|+||+++|.
T Consensus        67 ~~~~l~~~g~~~v~~~~--~~~~~~~~~~~l~-dadili~~~~~~~~~~~e~l~~ap~L--K~I~~~g~G~D~iDl~aa~  141 (386)
T PLN03139         67 IRDWLESQGHQYIVTDD--KEGPDCELEKHIP-DLHVLITTPFHPAYVTAERIKKAKNL--ELLLTAGIGSDHIDLPAAA  141 (386)
T ss_pred             HHHHHHhcCCeEEEeCC--CCCCHHHHHHHhC-CCeEEEEcCccCCCCCHHHHhhCCCc--cEEEECCccccccCHHHHH
Confidence            34677888888766543  2346788888887 799998864  247999999999988  9999999999999999999


Q ss_pred             hCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHh
Q 020301          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (328)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~  186 (328)
                      ++||.|+|+||+|+.+||||++++||++.|++..+++.+++|.|... .....+++|.|||+||||+|+||+.+|++| +
T Consensus       142 ~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~-~~~~~~~~L~gktVGIVG~G~IG~~vA~~L-~  219 (386)
T PLN03139        142 AAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVA-GIAYRAYDLEGKTVGTVGAGRIGRLLLQRL-K  219 (386)
T ss_pred             HCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccc-cccCCCcCCCCCEEEEEeecHHHHHHHHHH-H
Confidence            99999999999999999999999999999999999999999988631 112346799999999999999999999997 7


Q ss_pred             cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCc
Q 020301          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA  266 (328)
Q Consensus       187 ~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga  266 (328)
                      +|||+|++||++..+...  ..       .     .+.....++++++++||+|++|+|+|++|+++||++.|++||+|+
T Consensus       220 afG~~V~~~d~~~~~~~~--~~-------~-----~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga  285 (386)
T PLN03139        220 PFNCNLLYHDRLKMDPEL--EK-------E-----TGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGV  285 (386)
T ss_pred             HCCCEEEEECCCCcchhh--Hh-------h-----cCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCe
Confidence            999999999998532110  00       0     112234689999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccCCCeEEcCCCCCCCc
Q 020301          267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       267 ~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~  326 (328)
                      +|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+||.|.
T Consensus       286 ~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~  346 (386)
T PLN03139        286 LIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTI  346 (386)
T ss_pred             EEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCH
Confidence            999999999999999999999999999999999999986 579999999999999999884

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=9.4e-65  Score=488.50  Aligned_cols=276  Identities=25%  Similarity=0.295  Sum_probs=240.5

Q ss_pred             HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecC--CCCccHHHHHHhhccCCceEEEccccCCccChhHHHh
Q 020301           30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK  107 (328)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~--~~~~~~~~l~~~~~l~~k~i~~~g~G~d~id~~~~~~  107 (328)
                      .+.|++.++++.+..  +...+++++.+.+. ++|++++..  ..++++++++++|+|  |+|++.|+|+|+||+++|.+
T Consensus        61 ~~~l~~~g~e~~~~~--~~~~~~~~~~~~l~-dadili~~~~~~~~~~~e~l~~~p~L--K~I~~~g~G~D~id~~aa~~  135 (385)
T PRK07574         61 RKFLEERGHELVVTS--DKDGPDSDFEKELP-DADVVISQPFWPAYLTAERIAKAPNL--KLAITAGIGSDHVDLQAASE  135 (385)
T ss_pred             HHHHHhcCcEEEEeC--CCCCCHHHHHHHcC-CCeEEEEecCCCCCCCHHHHhhCCCC--cEEEECCcccccccHHHHHH
Confidence            356788888876543  22346788888887 799998863  357899999999987  99999999999999999999


Q ss_pred             CCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhc
Q 020301          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG  187 (328)
Q Consensus       108 ~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~  187 (328)
                      +||.|+|++++|+.+||||++++||+++|++..+++.+++|.|..+.. ...+++|.|+||||||+|+||+.+|++| ++
T Consensus       136 ~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~-~~~~~~L~gktVGIvG~G~IG~~vA~~l-~~  213 (385)
T PRK07574        136 HGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADC-VSRSYDLEGMTVGIVGAGRIGLAVLRRL-KP  213 (385)
T ss_pred             CCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccc-cccceecCCCEEEEECCCHHHHHHHHHH-Hh
Confidence            999999999999999999999999999999999999999999864321 1246789999999999999999999997 79


Q ss_pred             CCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcE
Q 020301          188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI  267 (328)
Q Consensus       188 fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~  267 (328)
                      |||+|++|||+..+....  .            ..+...+.+++|++++||+|++|||+|++|+++||++.|++||+|++
T Consensus       214 fG~~V~~~dr~~~~~~~~--~------------~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~  279 (385)
T PRK07574        214 FDVKLHYTDRHRLPEEVE--Q------------ELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSY  279 (385)
T ss_pred             CCCEEEEECCCCCchhhH--h------------hcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcE
Confidence            999999999986321100  0            01122346899999999999999999999999999999999999999


Q ss_pred             EEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccCCCeEEcCCCCCCCc
Q 020301          268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       268 lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~  326 (328)
                      |||+|||++||++||++||++|+|+|||||||++||++ ++|||++|||++|||+||+|.
T Consensus       280 lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~  339 (385)
T PRK07574        280 LVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTL  339 (385)
T ss_pred             EEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcH
Confidence            99999999999999999999999999999999999986 579999999999999999984

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=1.8e-64  Score=483.07  Aligned_cols=297  Identities=26%  Similarity=0.306  Sum_probs=244.0

Q ss_pred             EeCCCCCeEEEEeCCCCch--HH-HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhcc
Q 020301            9 VWNPNGKYRVVSTKPMPGT--RW-INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRA   85 (328)
Q Consensus         9 ~~~~~~~~~vlv~~~~~~~--~~-~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l   85 (328)
                      +|..++++|||++.+..+.  .+ .+.++..++  ..+.    ..+++++.+.+. ++|++++. ..++++++++++|+|
T Consensus        12 ~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~e~~~~~~-~~d~~i~~-~~~~~~~~l~~~~~L   83 (347)
T PLN02928         12 HHSDMRPTRVLFCGPEFPASYSYTREYLQKYPF--IQVD----AVAREDVPDVIA-NYDICVPK-MMRLDADIIARASQM   83 (347)
T ss_pred             cCCCCCCCEEEEECCCchhHHHHHHHHhhcCCe--eEec----CCCHHHHHHHhc-CCcEEEEC-CCCCCHHHHhcCCCc
Confidence            4556678899999877653  12 344544332  2222    135677887776 79988875 457899999999987


Q ss_pred             CCceEEEccccCCccChhHHHhCCceEecCCCC---CCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccc
Q 020301           86 GGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNL  162 (328)
Q Consensus        86 ~~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~  162 (328)
                        |+|++.|+|+|++|++++.++||.|+|+|++   ++.+||||++++||+++|++..+++.+++|.|..     ..+.+
T Consensus        84 --k~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~-----~~~~~  156 (347)
T PLN02928         84 --KLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE-----PIGDT  156 (347)
T ss_pred             --eEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc-----ccccC
Confidence              9999999999999999999999999999986   7899999999999999999999999999997742     24678


Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCc--cccccCCHHHHhhcCCEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVI  240 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV  240 (328)
                      |.|||+||||+|+||+.+|+++ ++|||+|++|||+........   ++  .........  ......+|++++++||+|
T Consensus       157 l~gktvGIiG~G~IG~~vA~~l-~afG~~V~~~dr~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~L~ell~~aDiV  230 (347)
T PLN02928        157 LFGKTVFILGYGAIGIELAKRL-RPFGVKLLATRRSWTSEPEDG---LL--IPNGDVDDLVDEKGGHEDIYEFAGEADIV  230 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-hhCCCEEEEECCCCChhhhhh---hc--cccccccccccccCcccCHHHHHhhCCEE
Confidence            9999999999999999999997 799999999999753211100   00  000000000  001346999999999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccCCCeEEcC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVP  319 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvilTP  319 (328)
                      ++|+|+|++|++|||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++||
T Consensus       231 vl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTP  310 (347)
T PLN02928        231 VLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITP  310 (347)
T ss_pred             EECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999975 57999999999999


Q ss_pred             CCCCCCc
Q 020301          320 HIASASK  326 (328)
Q Consensus       320 Hia~~t~  326 (328)
                      |+||+|.
T Consensus       311 Hia~~t~  317 (347)
T PLN02928        311 HVAGVTE  317 (347)
T ss_pred             cCCCChH
Confidence            9999985

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=3.2e-64  Score=505.26  Aligned_cols=283  Identities=36%  Similarity=0.540  Sum_probs=248.3

Q ss_pred             EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEcccc
Q 020301           17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG   96 (328)
Q Consensus        17 ~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G   96 (328)
                      ||+++.++.+. ..+.|++.++++...  .  ..+++++.+.+. ++|+++++..+++++++++++|+|  |+|++.|+|
T Consensus         1 ~vli~~~~~~~-~~~~l~~~~~~~~~~--~--~~~~~~~~~~~~-~~d~li~~~~~~~~~~~l~~~~~L--k~I~~~~~G   72 (525)
T TIGR01327         1 KVLIADPISPD-GIDILEDVGVEVDVQ--T--GLSREELLEIIP-DYDALIVRSATKVTEEVIAAAPKL--KVIGRAGVG   72 (525)
T ss_pred             CEEEeCCCCHH-HHHHHHhcCcEEEeC--C--CCCHHHHHHHhc-CCCEEEEcCCCCcCHHHHhhCCCc--eEEEECCcc
Confidence            47788877653 457777666676532  1  236788888887 799999887778999999999988  999999999


Q ss_pred             CCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHH
Q 020301           97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI  176 (328)
Q Consensus        97 ~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~I  176 (328)
                      +||||+++|+++||.|+|+||+|+.+||||++++||+++|++..+++.+++|.|..+   .+.|.+|+|||+||||+|+|
T Consensus        73 ~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG~G~I  149 (525)
T TIGR01327        73 VDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK---AFMGTELYGKTLGVIGLGRI  149 (525)
T ss_pred             cchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc---ccCccccCCCEEEEECCCHH
Confidence            999999999999999999999999999999999999999999999999999988632   24578999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccH
Q 020301          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (328)
Q Consensus       177 G~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~  256 (328)
                      |+++|+++ ++|||+|++|||+.......          .     .+.....+++|++++||+|++|+|+|++|+++||+
T Consensus       150 G~~vA~~l-~~fG~~V~~~d~~~~~~~~~----------~-----~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~  213 (525)
T TIGR01327       150 GSIVAKRA-KAFGMKVLAYDPYISPERAE----------Q-----LGVELVDDLDELLARADFITVHTPLTPETRGLIGA  213 (525)
T ss_pred             HHHHHHHH-HhCCCEEEEECCCCChhHHH----------h-----cCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCH
Confidence            99999997 79999999999974332110          0     11122358999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCCCc
Q 020301          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       257 ~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~  326 (328)
                      +.|++||+|++|||+|||++||++||++||++|+|+|||||||++||++++|||++|||++|||+||+|.
T Consensus       214 ~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~  283 (525)
T TIGR01327       214 EELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTR  283 (525)
T ss_pred             HHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHH
Confidence            9999999999999999999999999999999999999999999999988889999999999999999984

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.5e-63  Score=498.97  Aligned_cols=283  Identities=36%  Similarity=0.530  Sum_probs=247.5

Q ss_pred             eEEEEeCCCCchHHHHHHHhC-CCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEcc
Q 020301           16 YRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (328)
Q Consensus        16 ~~vlv~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g   94 (328)
                      |||+++.++.+. ..+.|++. ++++...  .  ..+++++.+.+. ++|+++++..+++++++++++|+|  |+|++.|
T Consensus         1 m~ili~~~~~~~-~~~~l~~~~~~~v~~~--~--~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~   72 (526)
T PRK13581          1 MKVLVSDPISPA-GLEILKDAPGVEVDVK--T--GLDKEELLEIIG-DYDALIVRSATKVTAEVLEAAKNL--KVIGRAG   72 (526)
T ss_pred             CeEEEeCCCCHH-HHHHHhccCCeEEEeC--C--CCCHHHHHHHhc-CCCEEEEcCCCCCCHHHHhhCCCC--eEEEECC
Confidence            478888887653 45677665 4455421  1  236788888887 799999887778999999999987  9999999


Q ss_pred             ccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecC
Q 020301           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (328)
Q Consensus        95 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G  174 (328)
                      +|+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++.+++.+++|.|..+   .+.|.+|.|||+||||+|
T Consensus        73 ~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG~G  149 (526)
T PRK13581         73 VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERK---KFMGVELYGKTLGIIGLG  149 (526)
T ss_pred             cccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCcc---CccccccCCCEEEEECCC
Confidence            99999999999999999999999999999999999999999999999999999988643   245789999999999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccc
Q 020301          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (328)
Q Consensus       175 ~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li  254 (328)
                      +||+.+|+++ ++|||+|++|||+.......          ..+     .. ..+++|++++||+|++|+|+|++|+++|
T Consensus       150 ~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~----------~~g-----~~-~~~l~ell~~aDiV~l~lP~t~~t~~li  212 (526)
T PRK13581        150 RIGSEVAKRA-KAFGMKVIAYDPYISPERAA----------QLG-----VE-LVSLDELLARADFITLHTPLTPETRGLI  212 (526)
T ss_pred             HHHHHHHHHH-HhCCCEEEEECCCCChhHHH----------hcC-----CE-EEcHHHHHhhCCEEEEccCCChHhhcCc
Confidence            9999999997 79999999999975432110          111     12 2389999999999999999999999999


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCCCc
Q 020301          255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       255 ~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~  326 (328)
                      |++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++++|||++|||++|||+|++|.
T Consensus       213 ~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~  284 (526)
T PRK13581        213 GAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTA  284 (526)
T ss_pred             CHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchH
Confidence            999999999999999999999999999999999999999999999999988889999999999999999884

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-62  Score=467.47  Aligned_cols=285  Identities=29%  Similarity=0.464  Sum_probs=241.3

Q ss_pred             eEEEEeCCCCch--HHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEc
Q 020301           16 YRVVSTKPMPGT--RWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (328)
Q Consensus        16 ~~vlv~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (328)
                      |||++...-+.+  ...+.+++.++++...   +.++++|. .+.+. ++|++++...+++++++++++|+.++|+|++.
T Consensus         2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~-~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~   76 (330)
T PRK12480          2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTS---KELLSSAT-VDQLK-DYDGVTTMQFGKLENDVYPKLESYGIKQIAQR   76 (330)
T ss_pred             cEEEEEeCcHHHHHHHHHHHHhcCeEEEEc---CCCCCHHH-HHHhC-CCCEEEEecCCCCCHHHHHhhhhcCceEEEec
Confidence            777765443332  2334556666555432   22455554 66676 79999987667899999999984445999999


Q ss_pred             cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEec
Q 020301           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (328)
Q Consensus        94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~  173 (328)
                      |+|+|+||+++|+++||.|+|+|++++++||||++++||+++|++..+++.+++|.|. |... ..+++|+|+|+||||+
T Consensus        77 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~-w~~~-~~~~~l~g~~VgIIG~  154 (330)
T PRK12480         77 TAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFT-WQAE-IMSKPVKNMTVAIIGT  154 (330)
T ss_pred             ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcc-cccc-cCccccCCCEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999884 6432 3468999999999999


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhcc
Q 020301          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (328)
Q Consensus       174 G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~l  253 (328)
                      |+||+.+|++| ++|||+|++||+++..... .                 .....++++++++||+|++|+|++++|+++
T Consensus       155 G~IG~~vA~~L-~~~G~~V~~~d~~~~~~~~-~-----------------~~~~~~l~ell~~aDiVil~lP~t~~t~~l  215 (330)
T PRK12480        155 GRIGAATAKIY-AGFGATITAYDAYPNKDLD-F-----------------LTYKDSVKEAIKDADIISLHVPANKESYHL  215 (330)
T ss_pred             CHHHHHHHHHH-HhCCCEEEEEeCChhHhhh-h-----------------hhccCCHHHHHhcCCEEEEeCCCcHHHHHH
Confidence            99999999997 7999999999998653210 0                 012358999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC----------C----CCcccCCCeEEcC
Q 020301          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------K----PGLSEMKNAIVVP  319 (328)
Q Consensus       254 i~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~----------~----~~L~~~~nvilTP  319 (328)
                      ++++.|++||+|++|||+|||.+||++||++||++|+|+|||||||++||+.          +    +|||++|||++||
T Consensus       216 i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTP  295 (330)
T PRK12480        216 FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTP  295 (330)
T ss_pred             HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECC
Confidence            9999999999999999999999999999999999999999999999999952          1    2699999999999


Q ss_pred             CCCCCCc
Q 020301          320 HIASASK  326 (328)
Q Consensus       320 Hia~~t~  326 (328)
                      |+|++|.
T Consensus       296 Hia~~t~  302 (330)
T PRK12480        296 HIAFFSD  302 (330)
T ss_pred             cccccHH
Confidence            9999985

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=6.2e-62  Score=463.66  Aligned_cols=289  Identities=25%  Similarity=0.430  Sum_probs=243.8

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEc
Q 020301           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (328)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (328)
                      ++++++++.+.+.. +.+.+.+. +++++..... ..++ |..+.+. ++|+++++..+++++++++++|++++|+|++.
T Consensus         2 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~~~~-e~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~   76 (332)
T PRK08605          2 TKIKIMSVRDEDAP-YIKAWAEK-HHVEVDLTKE-ALTD-DNVEEVE-GFDGLSLSQQIPLSEAIYKLLNELGIKQIAQR   76 (332)
T ss_pred             cEEEEEecCHHHHH-HHHHHHHh-cCeEEEEecC-CCCH-HHHHHhc-CCCEEEEecCCCCCHHHHHhhhhcCceEEEEc
Confidence            56788888876654 45555443 2333322111 2344 4456666 79999988777899999999998667999999


Q ss_pred             cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEec
Q 020301           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (328)
Q Consensus        94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~  173 (328)
                      |+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.| .|.+. ..+++|.|+||||||+
T Consensus        77 ~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~-~~~~~-~~~~~l~g~~VgIIG~  154 (332)
T PRK08605         77 SAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDF-RWEPP-ILSRSIKDLKVAVIGT  154 (332)
T ss_pred             ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCc-ccccc-cccceeCCCEEEEECC
Confidence            999999999999999999999999999999999999999999999999999999988 47542 3478999999999999


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhcc
Q 020301          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (328)
Q Consensus       174 G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~l  253 (328)
                      |+||+++|++++++|||+|++||++.......            .     .....++++++++||+|++|+|++++|+++
T Consensus       155 G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~------------~-----~~~~~~l~ell~~aDvIvl~lP~t~~t~~l  217 (332)
T PRK08605        155 GRIGLAVAKIFAKGYGSDVVAYDPFPNAKAAT------------Y-----VDYKDTIEEAVEGADIVTLHMPATKYNHYL  217 (332)
T ss_pred             CHHHHHHHHHHHhcCCCEEEEECCCccHhHHh------------h-----ccccCCHHHHHHhCCEEEEeCCCCcchhhh
Confidence            99999999996468999999999986532111            0     112358999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCC--C-CC-----------CcccCCCeEEcC
Q 020301          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--M-KP-----------GLSEMKNAIVVP  319 (328)
Q Consensus       254 i~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~--~-~~-----------~L~~~~nvilTP  319 (328)
                      ++++.|++||+|++|||+|||.++|+++|+++|++|+|+||+||||++||+  + ++           +||++|||++||
T Consensus       218 i~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTP  297 (332)
T PRK08605        218 FNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTP  297 (332)
T ss_pred             cCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECC
Confidence            999999999999999999999999999999999999999999999999983  2 22           499999999999


Q ss_pred             CCCCCCc
Q 020301          320 HIASASK  326 (328)
Q Consensus       320 Hia~~t~  326 (328)
                      |+|++|.
T Consensus       298 Hia~~t~  304 (332)
T PRK08605        298 HIAFYTD  304 (332)
T ss_pred             cccccHH
Confidence            9999984

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=1.3e-61  Score=453.10  Aligned_cols=275  Identities=39%  Similarity=0.561  Sum_probs=234.5

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHh-hccCCceEEEccccCCccChhHHHhCCce
Q 020301           33 LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAFSNMAVGYNNVDVNAANKYGIA  111 (328)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~l~~k~i~~~g~G~d~id~~~~~~~gI~  111 (328)
                      ++..+++.......+...+.++....+.....++.+.....++.+.+.++ |++  |+|+++|+|+|+||+++|++|||+
T Consensus        32 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~l--K~i~t~~vG~D~vDl~a~~krgI~  109 (336)
T KOG0069|consen   32 LRYQGYQLREEFLKEPKLIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNL--KLIVTMSVGYDHVDLEAARKRGIR  109 (336)
T ss_pred             cccccccceehhccccccchhhhhhhccceeeeeecccchHHhHhhhhhcCCCe--eEEEEeecccchhhHHHHHhcCce
Confidence            33334443333333333455556655554445555555667788888777 877  999999999999999999999999


Q ss_pred             EecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcE
Q 020301          112 VGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMN  191 (328)
Q Consensus       112 v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~  191 (328)
                      |+|+|+.++.+|||++++++|.+.|++..+++++++|.| .|......|..+.||||||+|+|+||+.+|++| ++|||.
T Consensus       110 V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL-~~Fg~~  187 (336)
T KOG0069|consen  110 VANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGW-GWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRL-KPFGCV  187 (336)
T ss_pred             EeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCc-cccCCccccccccCCEEEEecCcHHHHHHHHhh-hhccce
Confidence            999999999999999999999999999999999999999 687766778999999999999999999999997 799999


Q ss_pred             EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301          192 LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       192 V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~  271 (328)
                      +.|++|++....+.+  .|       +      ....++++++.+||+|++|||+|++|+|+||++.|.+||+|++|||+
T Consensus       188 i~y~~r~~~~~~~~~--~~-------~------~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~  252 (336)
T KOG0069|consen  188 ILYHSRTQLPPEEAY--EY-------Y------AEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNT  252 (336)
T ss_pred             eeeecccCCchhhHH--Hh-------c------ccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEec
Confidence            999999765422211  11       0      12469999999999999999999999999999999999999999999


Q ss_pred             CCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCCCc
Q 020301          272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       272 aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~  326 (328)
                      |||+++|++++++||++|+|+||+||||++||.+++||++++||++|||||+.|.
T Consensus       253 aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHigs~t~  307 (336)
T KOG0069|consen  253 ARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHIGSATL  307 (336)
T ss_pred             cccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEecccccCcH
Confidence            9999999999999999999999999999999977889999999999999999984

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=1.6e-59  Score=450.45  Aligned_cols=256  Identities=28%  Similarity=0.408  Sum_probs=220.4

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 020301           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (328)
Q Consensus        16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~   95 (328)
                      |||++...++.  ..+.|++. .++...+  ....+.+++    . ++|++++++.+++++++++ .+++  |+|++.++
T Consensus         1 mkIl~d~~~~~--~~~~~~~~-~ev~~~~--~~~~~~~~l----~-daD~liv~s~t~v~~~ll~-~~~L--k~I~~~~~   67 (378)
T PRK15438          1 MKILVDENMPY--ARELFSRL-GEVKAVP--GRPIPVAQL----A-DADALMVRSVTKVNESLLA-GKPI--KFVGTATA   67 (378)
T ss_pred             CEEEEeCCcch--HHHHHhhc-CcEEEeC--CCCCCHHHh----C-CCcEEEEcCCCCCCHHHhc-CCCC--eEEEECcc
Confidence            68999888863  24566654 3666543  234455553    3 7999999887889999985 5766  99999999


Q ss_pred             cCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH
Q 020301           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (328)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~  175 (328)
                      |+||||+++++++||.|+|+||+|+.+||||++++||+++|+.                     +.+|.|||+||||+|+
T Consensus        68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~---------------------g~~L~gktvGIIG~G~  126 (378)
T PRK15438         68 GTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD---------------------GFSLHDRTVGIVGVGN  126 (378)
T ss_pred             cccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC---------------------CCCcCCCEEEEECcCH
Confidence            9999999999999999999999999999999999999999851                     2479999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChh----hh
Q 020301          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TY  251 (328)
Q Consensus       176 IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~----t~  251 (328)
                      ||+.+|+++ ++|||+|++|||.....               +.    .....+|++++++||+|++|+|+|++    |+
T Consensus       127 IG~~vA~~l-~a~G~~V~~~dp~~~~~---------------~~----~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~  186 (378)
T PRK15438        127 VGRRLQARL-EALGIKTLLCDPPRADR---------------GD----EGDFRSLDELVQEADILTFHTPLFKDGPYKTL  186 (378)
T ss_pred             HHHHHHHHH-HHCCCEEEEECCccccc---------------cc----ccccCCHHHHHhhCCEEEEeCCCCCCcccccc
Confidence            999999997 79999999999854210               00    01246899999999999999999996    99


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCCCc
Q 020301          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       252 ~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~  326 (328)
                      ||||++.|++||+|++|||+|||++||++||++||++|++.||+||||++||.++++|+..+| ++||||||+|.
T Consensus       187 ~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~  260 (378)
T PRK15438        187 HLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTL  260 (378)
T ss_pred             cccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcH
Confidence            999999999999999999999999999999999999999999999999999988888987765 99999999984

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=2.2e-58  Score=435.09  Aligned_cols=272  Identities=20%  Similarity=0.236  Sum_probs=220.9

Q ss_pred             EEEEeCCC-CchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 020301           17 RVVSTKPM-PGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (328)
Q Consensus        17 ~vlv~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~   95 (328)
                      .+++..+. ....|.+.|++...+.++....+     ++    . .++|+++++..   +.+.++ .++|  |+|++.|+
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~-----~~----~-~~a~~~~~~~~---~~~~l~-~~~L--k~I~~~~a   65 (312)
T PRK15469          2 DIIFYHPTFDTQWWIEALRKALPQARVRAWKS-----GD----N-DPADYALVWHP---PVEMLA-GRDL--KAVFALGA   65 (312)
T ss_pred             EEEEeCCccCHHHHHHHHHHHCCCCeEEecCC-----CC----C-ccCeEEEEeCC---ChHHhc-cCCc--eEEEEccc
Confidence            45554444 44447888887533333221111     11    1 26888887642   356665 4666  99999999


Q ss_pred             cCCccChhH-----HHhCCceEecCCC-CCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEE
Q 020301           96 GYNNVDVNA-----ANKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (328)
Q Consensus        96 G~d~id~~~-----~~~~gI~v~n~p~-~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvg  169 (328)
                      |+|++|.+.     +..+||.|+|+++ .++.+||||++++||+++|++..+.+.+++|.|..+     .+.++.|+|+|
T Consensus        66 G~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~-----~~~~l~g~tvg  140 (312)
T PRK15469         66 GVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL-----PEYHREDFTIG  140 (312)
T ss_pred             ccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC-----CCCCcCCCEEE
Confidence            999998332     3458999999874 689999999999999999999999999999987532     24689999999


Q ss_pred             EEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChh
Q 020301          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (328)
Q Consensus       170 IiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~  249 (328)
                      |||+|+||+.+|+++ ++|||+|++||++.+...              +..  ......++++++++||+|++|+|+|++
T Consensus       141 IvG~G~IG~~vA~~l-~afG~~V~~~~~~~~~~~--------------~~~--~~~~~~~l~e~l~~aDvvv~~lPlt~~  203 (312)
T PRK15469        141 ILGAGVLGSKVAQSL-QTWGFPLRCWSRSRKSWP--------------GVQ--SFAGREELSAFLSQTRVLINLLPNTPE  203 (312)
T ss_pred             EECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCCC--------------Cce--eecccccHHHHHhcCCEEEECCCCCHH
Confidence            999999999999997 799999999998754210              100  111246899999999999999999999


Q ss_pred             hhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCC-CCcccCCCeEEcCCCCCCCc
Q 020301          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       250 t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~  326 (328)
                      |+++||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++. +|||++|||++|||+||+|.
T Consensus       204 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~  281 (312)
T PRK15469        204 TVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTR  281 (312)
T ss_pred             HHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcC
Confidence            999999999999999999999999999999999999999999999999999999864 79999999999999999986

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=2.2e-58  Score=443.77  Aligned_cols=256  Identities=27%  Similarity=0.398  Sum_probs=219.9

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 020301           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (328)
Q Consensus        16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~   95 (328)
                      |||++.+.++..  .+.+++.+ ++....  ....+.+    .+. ++|++++++.+++++++++ .+++  |+|++.++
T Consensus         1 mkI~~d~~~p~~--~~~~~~~~-~v~~~~--~~~~~~~----~l~-daD~liv~~~t~v~~~ll~-~~~L--k~I~~~~~   67 (381)
T PRK00257          1 MKIVADENIPLL--DAFFAGFG-EIRRLP--GRAFDRA----AVR-DADVLLVRSVTRVDRALLE-GSRV--RFVGTCTI   67 (381)
T ss_pred             CEEEEecCchhH--HHHHhhCC-cEEEcC--CcccCHH----HhC-CceEEEEeCCCCCCHHHhc-CCCC--eEEEECCc
Confidence            789999988732  45565543 565433  2223333    344 7999998887889999987 4665  99999999


Q ss_pred             cCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH
Q 020301           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (328)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~  175 (328)
                      |+||||+++++++||.|+|+||+|+.+||||++++||+++|+                     .+.++.||||||||+|+
T Consensus        68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~---------------------~g~~l~gktvGIIG~G~  126 (381)
T PRK00257         68 GTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER---------------------EGVDLAERTYGVVGAGH  126 (381)
T ss_pred             cccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc---------------------cCCCcCcCEEEEECCCH
Confidence            999999999999999999999999999999999999999875                     13579999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCCh----hhh
Q 020301          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK----TTY  251 (328)
Q Consensus       176 IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~----~t~  251 (328)
                      ||+.+|+++ ++|||+|++|||.....              .+     .....++++++++||+|++|+|+|+    +|+
T Consensus       127 IG~~va~~l-~a~G~~V~~~Dp~~~~~--------------~~-----~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~  186 (381)
T PRK00257        127 VGGRLVRVL-RGLGWKVLVCDPPRQEA--------------EG-----DGDFVSLERILEECDVISLHTPLTKEGEHPTR  186 (381)
T ss_pred             HHHHHHHHH-HHCCCEEEEECCccccc--------------cc-----CccccCHHHHHhhCCEEEEeCcCCCCcccccc
Confidence            999999996 79999999999854320              00     1124689999999999999999999    599


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCCCc
Q 020301          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       252 ~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~  326 (328)
                      ||||++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||.++++||+. |+++||||||+|.
T Consensus       187 ~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~  260 (381)
T PRK00257        187 HLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSL  260 (381)
T ss_pred             ccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCH
Confidence            9999999999999999999999999999999999999999999999999999888899986 9999999999984

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.3e-56  Score=420.97  Aligned_cols=227  Identities=23%  Similarity=0.366  Sum_probs=198.1

Q ss_pred             CccEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHH
Q 020301           62 KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA  141 (328)
Q Consensus        62 ~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~  141 (328)
                      ++|+++++..       +...++|  |+|++.|+|+|+||+++|+++||.++|. |.++.+||||++++||+++|++..+
T Consensus        34 ~a~~~~~~~~-------~~~~~~L--k~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~  103 (303)
T PRK06436         34 DAEAILIKGR-------YVPGKKT--KMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICEN  103 (303)
T ss_pred             CCCEEEecCC-------cCCCCCe--EEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHH
Confidence            5787765432       1234565  9999999999999999999988888774 8899999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCC
Q 020301          142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP  221 (328)
Q Consensus       142 ~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  221 (328)
                      ++.+++|.|..+     .+++|+|||+||||+|+||+++|+++ ++|||+|++|||+..+.               +.. 
T Consensus       104 ~~~~~~g~w~~~-----~~~~L~gktvgIiG~G~IG~~vA~~l-~afG~~V~~~~r~~~~~---------------~~~-  161 (303)
T PRK06436        104 NYNMKNGNFKQS-----PTKLLYNKSLGILGYGGIGRRVALLA-KAFGMNIYAYTRSYVND---------------GIS-  161 (303)
T ss_pred             HHHHHcCCCCCC-----CCCCCCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEECCCCccc---------------Ccc-
Confidence            999999988632     35789999999999999999999996 79999999999975320               110 


Q ss_pred             ccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCC
Q 020301          222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (328)
Q Consensus       222 ~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~  301 (328)
                         ....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+++|++||++||++|++.||+||||++
T Consensus       162 ---~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~  238 (303)
T PRK06436        162 ---SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWN  238 (303)
T ss_pred             ---cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCC
Confidence               11368999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccCCCeEEcCCCCC-CC
Q 020301          302 EPYMKPGLSEMKNAIVVPHIAS-AS  325 (328)
Q Consensus       302 EP~~~~~L~~~~nvilTPHia~-~t  325 (328)
                      ||++++.  .+|||++|||++| +|
T Consensus       239 EP~~~~~--~~~nviiTPHi~g~~t  261 (303)
T PRK06436        239 EPIITET--NPDNVILSPHVAGGMS  261 (303)
T ss_pred             CCCCccC--CCCCEEECCccccccC
Confidence            9985542  6899999999865 55

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=7.9e-52  Score=361.55  Aligned_cols=177  Identities=42%  Similarity=0.571  Sum_probs=151.7

Q ss_pred             HHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHH
Q 020301          128 ASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV  207 (328)
Q Consensus       128 l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~  207 (328)
                      +++||++.|++..+++.+++|.|  |......+++++|+||||||+|+||+++|+++ ++|||+|++|||+..+....  
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W--~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~--   75 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEW--ASRERFPGRELRGKTVGIIGYGRIGRAVARRL-KAFGMRVIGYDRSPKPEEGA--   75 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBH--HHHTTTTBS-STTSEEEEESTSHHHHHHHHHH-HHTT-EEEEEESSCHHHHHH--
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCC--CCCcCCCccccCCCEEEEEEEcCCcCeEeeee-ecCCceeEEecccCChhhhc--
Confidence            68999999999999999999998  22223467899999999999999999999997 79999999999998754211  


Q ss_pred             hhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020301          208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (328)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~  287 (328)
                      ..            .+ ....+++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||+
T Consensus        76 ~~------------~~-~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~  142 (178)
T PF02826_consen   76 DE------------FG-VEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE  142 (178)
T ss_dssp             HH------------TT-EEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred             cc------------cc-ceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence            00            01 135799999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccEEEEeCCCCCCCCC-CCcccCCCeEEcCCCC
Q 020301          288 QNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIA  322 (328)
Q Consensus       288 ~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia  322 (328)
                      +|++.||+||||++||++. +|||++|||++|||+|
T Consensus       143 ~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  143 SGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             TTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred             hccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence            9999999999999999875 5999999999999997

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=100.00  E-value=4.3e-34  Score=265.45  Aligned_cols=251  Identities=28%  Similarity=0.390  Sum_probs=212.8

Q ss_pred             CHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHH
Q 020301           51 SVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL  130 (328)
Q Consensus        51 ~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~  130 (328)
                      +-.|+.+.+-.++-+-+...+..++++-+++++.+  +++.+.|.|+|++|+.+|.+.||.|||.|+...+.+|+-++..
T Consensus        62 stqeIhekvLneavgam~yh~i~l~reDlEkfkal--Rv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~h  139 (435)
T KOG0067|consen   62 STQEIHEKVLNEAVGAMMYHTITLPREDLEKFKAL--RVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCH  139 (435)
T ss_pred             chHHHHHHHHHHhhhcceeeecccchhhHHHhhhh--ceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHH
Confidence            34566654433343334444456788888999887  9999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcHHHHHHHHHcCCCCC-CCCC---cccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH
Q 020301          131 SLAAARRIVEADEFMRAGLYDG-WLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF  206 (328)
Q Consensus       131 ~L~~~R~~~~~~~~~~~g~w~~-w~~~---~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~  206 (328)
                      +|.+.|+.....+.+++|.|.+ |...   ......++|.++|++|+|++|+.++.+ +++||..|+.||++...-.+. 
T Consensus       140 Il~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~-A~afg~~~ifydp~~~~g~~~-  217 (435)
T KOG0067|consen  140 ILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALR-AKAFGFVVIFYDPYLIDGIDK-  217 (435)
T ss_pred             HHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhh-hhcccceeeeecchhhhhhhh-
Confidence            9999999999999999998843 2111   112346899999999999999999999 599999999999997654432 


Q ss_pred             HhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 020301          207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (328)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL  286 (328)
                                    ..+..++.++++++.++|.+++||.+++.++++||...+++|++|++++|++||+++|+++|.+||
T Consensus       218 --------------~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaL  283 (435)
T KOG0067|consen  218 --------------SLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQAL  283 (435)
T ss_pred             --------------hcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhh
Confidence                          223445568999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCccEEEEeCCCCCCC--CCCCcccCCCeEEcCCCCCCCc
Q 020301          287 KQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       287 ~~g~i~gaalDV~~~EP~--~~~~L~~~~nvilTPHia~~t~  326 (328)
                      ++|++.+++       |.  ...||.+.||.++|||.++++.
T Consensus       284 k~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~e  318 (435)
T KOG0067|consen  284 KSGRIRGAA-------PRSFKQGPLKDAPNLICTPHTAWYSE  318 (435)
T ss_pred             ccCceeccc-------CcccccccccCCCCCCCCcccchhhH
Confidence            999999998       32  2358999999999999999875

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.90  E-value=1.1e-22  Score=199.35  Aligned_cols=170  Identities=20%  Similarity=0.320  Sum_probs=136.7

Q ss_pred             ccccCCccC-hhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEE
Q 020301           93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (328)
Q Consensus        93 ~g~G~d~id-~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIi  171 (328)
                      .++|+..+- ++.....||+|+|+|++++.+++|+++++++++..      ..+|.+           +..+.|++++|+
T Consensus       198 TttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d------~~~R~~-----------~~~LaGKtVgVI  260 (476)
T PTZ00075        198 TTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLID------GIFRAT-----------DVMIAGKTVVVC  260 (476)
T ss_pred             chHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHH------HHHHhc-----------CCCcCCCEEEEE
Confidence            466765542 22223468999999999999999999999999883      344544           247999999999


Q ss_pred             ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhh
Q 020301          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (328)
Q Consensus       172 G~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~  251 (328)
                      |+|.||+.+|+++ ++|||+|+++++++....+..         ..|     + ...++++++++||+|++|.    .|+
T Consensus       261 G~G~IGr~vA~rL-~a~Ga~ViV~e~dp~~a~~A~---------~~G-----~-~~~~leell~~ADIVI~at----Gt~  320 (476)
T PTZ00075        261 GYGDVGKGCAQAL-RGFGARVVVTEIDPICALQAA---------MEG-----Y-QVVTLEDVVETADIFVTAT----GNK  320 (476)
T ss_pred             CCCHHHHHHHHHH-HHCCCEEEEEeCCchhHHHHH---------hcC-----c-eeccHHHHHhcCCEEEECC----Ccc
Confidence            9999999999996 799999999987754432211         111     1 2358999999999999984    579


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCC
Q 020301          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK  306 (328)
Q Consensus       252 ~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~  306 (328)
                      ++|+++.|++||+|++|||++|+   |++.++++|+++.    ++||++.||..+
T Consensus       321 ~iI~~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~  368 (476)
T PTZ00075        321 DIITLEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD  368 (476)
T ss_pred             cccCHHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence            99999999999999999999999   7899999998753    799999999644

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.85  E-value=1.5e-20  Score=175.80  Aligned_cols=203  Identities=19%  Similarity=0.209  Sum_probs=147.2

Q ss_pred             HHHHHHhCCCeEEEecCCC--C---CCCHHHHHHH-hcCCccEEEecCC----------------CCccHHHHHHhhccC
Q 020301           29 WINLLIEQDCRVEICTQKK--T---ILSVEDIIAL-IGDKCDGVIGQLT----------------EDWGETLFAALSRAG   86 (328)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~--~---~~~~e~~~~~-~~~~~d~li~~~~----------------~~~~~~~l~~~~~l~   86 (328)
                      ..+.|.+.|+.+..+-.+.  .   ....+++.+. +. ++|++|.-.+                .++++++++++|.  
T Consensus        16 ~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~--   92 (287)
T TIGR02853        16 LIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLT-TLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTKG--   92 (287)
T ss_pred             HHHHHHHCCCEEEEEeccccccccccceeecchhhhhc-cCCEEEECCccccCCceEecccccCCccccHHHHHhcCC--
Confidence            4577888898887654321  1   0112222222 33 6888875321                2346788888762  


Q ss_pred             CceEEEccccCCccChh-HHHhCCceEe------cCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCccc
Q 020301           87 GKAFSNMAVGYNNVDVN-AANKYGIAVG------NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV  159 (328)
Q Consensus        87 ~k~i~~~g~G~d~id~~-~~~~~gI~v~------n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~  159 (328)
                         ++...+|+++.|++ +|+++||.|+      |++.+|+.++||+++++++..                        .
T Consensus        93 ---~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~------------------------~  145 (287)
T TIGR02853        93 ---HCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH------------------------T  145 (287)
T ss_pred             ---CCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh------------------------c
Confidence               44456788888888 9999999999      999999999999999887732                        1


Q ss_pred             ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      +.+++|++++|+|+|.||+.+|++| ++||++|++++|+..... .        ....+...   ....+++++++++|+
T Consensus       146 ~~~l~gk~v~IiG~G~iG~avA~~L-~~~G~~V~v~~R~~~~~~-~--------~~~~g~~~---~~~~~l~~~l~~aDi  212 (287)
T TIGR02853       146 DFTIHGSNVMVLGFGRTGMTIARTF-SALGARVFVGARSSADLA-R--------ITEMGLIP---FPLNKLEEKVAEIDI  212 (287)
T ss_pred             CCCCCCCEEEEEcChHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-H--------HHHCCCee---ecHHHHHHHhccCCE
Confidence            2378999999999999999999997 799999999999865321 1        11112111   123467889999999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc-ccCH
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-VIDE  279 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~-~vde  279 (328)
                      |++|+|.+     +++++.++.||+++++||++..+ -+|-
T Consensus       213 Vint~P~~-----ii~~~~l~~~k~~aliIDlas~Pg~tdf  248 (287)
T TIGR02853       213 VINTIPAL-----VLTADVLSKLPKHAVIIDLASKPGGTDF  248 (287)
T ss_pred             EEECCChH-----HhCHHHHhcCCCCeEEEEeCcCCCCCCH
Confidence            99999953     78899999999999999998743 3444

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.72  E-value=4.7e-17  Score=135.26  Aligned_cols=101  Identities=31%  Similarity=0.428  Sum_probs=86.1

Q ss_pred             EEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEccccC
Q 020301           18 VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY   97 (328)
Q Consensus        18 vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~   97 (328)
                      ||+++++++. ..+.|++ ++++++..    ..+.+++.+.+. ++|++++...+++++++++.+|+|  |+|++.|+|+
T Consensus         1 ili~~~~~~~-~~~~l~~-~~~v~~~~----~~~~~~~~~~l~-~~d~ii~~~~~~~~~~~l~~~~~L--k~I~~~~~G~   71 (133)
T PF00389_consen    1 ILITDPLPDE-EIERLEE-GFEVEFCD----SPSEEELAERLK-DADAIIVGSGTPLTAEVLEAAPNL--KLISTAGAGV   71 (133)
T ss_dssp             EEESSS-SHH-HHHHHHH-TSEEEEES----SSSHHHHHHHHT-TESEEEESTTSTBSHHHHHHHTT---SEEEESSSSC
T ss_pred             eEEeccCCHH-HHHHHHC-CceEEEeC----CCCHHHHHHHhC-CCeEEEEcCCCCcCHHHHhcccee--EEEEEccccc
Confidence            6888988764 4788888 66887764    346788998887 799999988777999999999987  9999999999


Q ss_pred             CccChhHHHhCCceEecCCCCCCchHHHHH
Q 020301           98 NNVDVNAANKYGIAVGNTPGVLTETTAELA  127 (328)
Q Consensus        98 d~id~~~~~~~gI~v~n~p~~~~~~vAE~a  127 (328)
                      |+||+++|+++||.|+|+||+++.+||||+
T Consensus        72 d~id~~~a~~~gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   72 DNIDLEAAKERGIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             TTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred             CcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence            999999999999999999999999999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.72  E-value=3.9e-16  Score=146.79  Aligned_cols=195  Identities=19%  Similarity=0.158  Sum_probs=142.1

Q ss_pred             HHHHHHhCCCeEEEecCCCCCC---------CHHHHHHHhcCCccEEEecCC----------------CCccHHHHHHhh
Q 020301           29 WINLLIEQDCRVEICTQKKTIL---------SVEDIIALIGDKCDGVIGQLT----------------EDWGETLFAALS   83 (328)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~---------~~e~~~~~~~~~~d~li~~~~----------------~~~~~~~l~~~~   83 (328)
                      ..+.|.+.|+++.+...++...         +.++   .+. ++|+++.-.+                ..++++.++.+|
T Consensus        17 ~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~---~~~-~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~   92 (296)
T PRK08306         17 LIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEE---ALS-DVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTP   92 (296)
T ss_pred             HHHHHHHCCCEEEEEeccccccccCCceeeccHHH---Hhc-cCCEEEECCccccCCceeeccccccCCcchHHHHHhcC
Confidence            4577888899987754443221         2222   333 6898875421                123578899998


Q ss_pred             ccCCceEEEccccCCccChhHHHhCCceEecCCCC------CCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCc
Q 020301           84 RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL  157 (328)
Q Consensus        84 ~l~~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~------~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~  157 (328)
                      +.  .. ...|.+.++++ +.+.++||.+.+....      |+.++||.++.+++.   +                    
T Consensus        93 ~~--~~-v~~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~---~--------------------  145 (296)
T PRK08306         93 EH--CT-IFSGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIE---H--------------------  145 (296)
T ss_pred             CC--CE-EEEecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHH---h--------------------
Confidence            75  43 33688999988 8899999999987764      888999997776441   0                    


Q ss_pred             ccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301          158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (328)
Q Consensus       158 ~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (328)
                       .+..+.|++++|+|+|.+|+.+++.| +++|++|.++|+++....  ..       +..+..   .....++.+.++++
T Consensus       146 -~~~~l~g~kvlViG~G~iG~~~a~~L-~~~Ga~V~v~~r~~~~~~--~~-------~~~G~~---~~~~~~l~~~l~~a  211 (296)
T PRK08306        146 -TPITIHGSNVLVLGFGRTGMTLARTL-KALGANVTVGARKSAHLA--RI-------TEMGLS---PFHLSELAEEVGKI  211 (296)
T ss_pred             -CCCCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHHHH--HH-------HHcCCe---eecHHHHHHHhCCC
Confidence             12467899999999999999999997 799999999999865421  11       111221   11234678899999


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      |+|+.++|     ..+++++.++.|++++++||++-
T Consensus       212 DiVI~t~p-----~~~i~~~~l~~~~~g~vIIDla~  242 (296)
T PRK08306        212 DIIFNTIP-----ALVLTKEVLSKMPPEALIIDLAS  242 (296)
T ss_pred             CEEEECCC-----hhhhhHHHHHcCCCCcEEEEEcc
Confidence            99999998     35788999999999999999974

>PLN02494 adenosylhomocysteinase

Probab=99.71  E-value=2.5e-17  Score=161.24  Aligned_cols=122  Identities=20%  Similarity=0.292  Sum_probs=102.9

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ..+.|++++|+|+|.||+.+|+++ ++|||+|+++++++....+..         ..|.      ...+++++++.+|+|
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~a-ka~Ga~VIV~e~dp~r~~eA~---------~~G~------~vv~leEal~~ADVV  313 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAM-KAAGARVIVTEIDPICALQAL---------MEGY------QVLTLEDVVSEADIF  313 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhHHHH---------hcCC------eeccHHHHHhhCCEE
Confidence            347999999999999999999996 799999999998765422211         1121      124789999999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCC-CcccCHHHHHHH--HHcCCccEEEEeCCCCCC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR-GPVIDEVALVEH--LKQNPMFRVGLDVFEDEP  303 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR-G~~vde~aL~~a--L~~g~i~gaalDV~~~EP  303 (328)
                      +.    +..|+++++++.|+.||+|++|+|++| +..||+++|.++  ++.+.+. +.+|+|+.|-
T Consensus       314 I~----tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d  374 (477)
T PLN02494        314 VT----TTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD  374 (477)
T ss_pred             EE----CCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence            97    467899999999999999999999999 679999999998  9999888 9999999864

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.67  E-value=2.1e-15  Score=146.55  Aligned_cols=121  Identities=27%  Similarity=0.324  Sum_probs=101.7

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ..+.|++++|+|+|.||+.+|+++ +++|++|+++|+++....+.         ...|     + ...+++++++.+|+|
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~a-k~~Ga~ViV~d~dp~r~~~A---------~~~G-----~-~v~~leeal~~aDVV  254 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRA-RGMGARVIVTEVDPIRALEA---------AMDG-----F-RVMTMEEAAKIGDIF  254 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHH-hhCcCEEEEEeCChhhHHHH---------HhcC-----C-EeCCHHHHHhcCCEE
Confidence            358999999999999999999996 79999999998876543221         1112     1 234778999999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCccEEEEeCCCC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFED  301 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~aL~~g~i~gaalDV~~~  301 (328)
                      +.+.    .+.++|+.+.|..||+|++++|++|+++ ||.++|.+++.+.+..+..+|+|.-
T Consensus       255 ItaT----G~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~  312 (406)
T TIGR00936       255 ITAT----GNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL  312 (406)
T ss_pred             EECC----CCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence            8753    4688999999999999999999999998 9999999999888888999999874

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.55  E-value=1.2e-14  Score=136.32  Aligned_cols=97  Identities=26%  Similarity=0.330  Sum_probs=77.5

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ..|.||||||||+|+||+++|++| ++||++|++|++..... +.        +...|     + ...+++|++++||+|
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL-~d~G~~ViV~~r~~~s~-~~--------A~~~G-----~-~v~sl~Eaak~ADVV   75 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNL-RDSGVEVVVGVRPGKSF-EV--------AKADG-----F-EVMSVSEAVRTAQVV   75 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHH-HHCcCEEEEEECcchhh-HH--------HHHcC-----C-EECCHHHHHhcCCEE
Confidence            479999999999999999999997 79999999998653221 10        11112     2 235899999999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      ++|+|+ ++|+++++++.|..||+|++|+-. .|-
T Consensus        76 ~llLPd-~~t~~V~~~eil~~MK~GaiL~f~-hgf  108 (335)
T PRK13403         76 QMLLPD-EQQAHVYKAEVEENLREGQMLLFS-HGF  108 (335)
T ss_pred             EEeCCC-hHHHHHHHHHHHhcCCCCCEEEEC-CCc
Confidence            999996 788999999999999999977643 443

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.53  E-value=6e-13  Score=130.19  Aligned_cols=155  Identities=23%  Similarity=0.293  Sum_probs=111.1

Q ss_pred             ccccCCcc-ChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEE
Q 020301           93 MAVGYNNV-DVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (328)
Q Consensus        93 ~g~G~d~i-d~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIi  171 (328)
                      .++|+..+ ......+.+++|.|.+..+..+.-|...+.-.+....+      .+.           .+..+.|++++|+
T Consensus       156 TttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai------~ra-----------t~~~l~Gk~VlVi  218 (425)
T PRK05476        156 TTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGI------KRA-----------TNVLIAGKVVVVA  218 (425)
T ss_pred             chHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHH------HHh-----------ccCCCCCCEEEEE
Confidence            56777654 22323457899999999888775553332222211111      111           1235899999999


Q ss_pred             ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhh
Q 020301          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (328)
Q Consensus       172 G~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~  251 (328)
                      |+|.||+.+|+++ +++|++|+++|+++....+..         ..|     + ...+++++++.+|+|+.+.    .+.
T Consensus       219 G~G~IG~~vA~~l-r~~Ga~ViV~d~dp~ra~~A~---------~~G-----~-~v~~l~eal~~aDVVI~aT----G~~  278 (425)
T PRK05476        219 GYGDVGKGCAQRL-RGLGARVIVTEVDPICALQAA---------MDG-----F-RVMTMEEAAELGDIFVTAT----GNK  278 (425)
T ss_pred             CCCHHHHHHHHHH-HhCCCEEEEEcCCchhhHHHH---------hcC-----C-EecCHHHHHhCCCEEEECC----CCH
Confidence            9999999999996 799999999998875432211         112     1 2347899999999998764    457


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 020301          252 HLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (328)
Q Consensus       252 ~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~  284 (328)
                      ++|+.+.|..||+|++++|++|.+. +|.++|.+
T Consensus       279 ~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        279 DVITAEHMEAMKDGAILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             HHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence            8899999999999999999999887 78888764

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.42  E-value=1.2e-12  Score=111.47  Aligned_cols=104  Identities=29%  Similarity=0.426  Sum_probs=76.1

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ..+.||++.|+|||.+|+.+|+.| +++|++|++++..|....+...+.|               ...+++++++++|++
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~l-r~~Ga~V~V~e~DPi~alqA~~dGf---------------~v~~~~~a~~~adi~   82 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARAL-RGLGARVTVTEIDPIRALQAAMDGF---------------EVMTLEEALRDADIF   82 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHH-HHTT-EEEEE-SSHHHHHHHHHTT----------------EEE-HHHHTTT-SEE
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHH-hhCCCEEEEEECChHHHHHhhhcCc---------------EecCHHHHHhhCCEE
Confidence            568999999999999999999997 7999999999999877666544433               235899999999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~  284 (328)
                      +.+.-    .++++..+.|.+||+|+++.|++.-+. +|-+.|.+
T Consensus        83 vtaTG----~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~  123 (162)
T PF00670_consen   83 VTATG----NKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEA  123 (162)
T ss_dssp             EE-SS----SSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred             EECCC----CccccCHHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence            87643    478899999999999999999987554 66666554

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.30  E-value=7.9e-12  Score=107.50  Aligned_cols=115  Identities=25%  Similarity=0.280  Sum_probs=85.5

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      ++|||||+|.||+.+|++| ..-|.+|++||++++.. +++.        ..+     .....++.|++++||+|++|+|
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L-~~~g~~v~~~d~~~~~~-~~~~--------~~g-----~~~~~s~~e~~~~~dvvi~~v~   66 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNL-AKAGYEVTVYDRSPEKA-EALA--------EAG-----AEVADSPAEAAEQADVVILCVP   66 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHH-HHTTTEEEEEESSHHHH-HHHH--------HTT-----EEEESSHHHHHHHBSEEEE-SS
T ss_pred             CEEEEEchHHHHHHHHHHH-HhcCCeEEeeccchhhh-hhhH--------Hhh-----hhhhhhhhhHhhcccceEeecc
Confidence            5899999999999999998 47799999999987542 2211        112     3345799999999999999999


Q ss_pred             CChhhhcccc-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEe
Q 020301          246 LDKTTYHLIN-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (328)
Q Consensus       246 lt~~t~~li~-~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalD  297 (328)
                      ..++++.++. .+.++.+++|.++||++....-....+.+.+.+..  ...+|
T Consensus        67 ~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g--~~~vd  117 (163)
T PF03446_consen   67 DDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG--VRYVD  117 (163)
T ss_dssp             SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT--EEEEE
T ss_pred             cchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc--ceeee
Confidence            8888887763 23788899999999999999999999999998654  33444

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.25  E-value=4e-11  Score=111.46  Aligned_cols=113  Identities=23%  Similarity=0.186  Sum_probs=95.2

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      .+||+||+|.||..+|++| ..-|..|.+|||++.+..+.        +...|     .....+..|+.++||+|++|+|
T Consensus         1 ~kIafIGLG~MG~pmA~~L-~~aG~~v~v~~r~~~ka~~~--------~~~~G-----a~~a~s~~eaa~~aDvVitmv~   66 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANL-LKAGHEVTVYNRTPEKAAEL--------LAAAG-----ATVAASPAEAAAEADVVITMLP   66 (286)
T ss_pred             CeEEEEcCchhhHHHHHHH-HHCCCEEEEEeCChhhhhHH--------HHHcC-----CcccCCHHHHHHhCCEEEEecC
Confidence            4799999999999999998 57799999999998653221        11222     2345688899999999999999


Q ss_pred             CChhhhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       246 lt~~t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      ..++.+.++.  ...++.||||+++||.+.-+.-....+.+++++..+.
T Consensus        67 ~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~  115 (286)
T COG2084          67 DDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLE  115 (286)
T ss_pred             CHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc
Confidence            9999998885  6799999999999999999999999999999987654

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.25  E-value=3e-11  Score=113.23  Aligned_cols=111  Identities=20%  Similarity=0.190  Sum_probs=88.5

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl  246 (328)
                      +|||||+|.||+.+|+.+ ...|.+|++||+++... +..        ...+.     ....+.++++++||+|++|+|.
T Consensus         1 ~IgvIG~G~mG~~iA~~l-~~~G~~V~~~dr~~~~~-~~~--------~~~g~-----~~~~~~~~~~~~aDivi~~vp~   65 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINL-AKAGYQLHVTTIGPEVA-DEL--------LAAGA-----VTAETARQVTEQADVIFTMVPD   65 (291)
T ss_pred             CEEEEEecHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHH--------HHCCC-----cccCCHHHHHhcCCEEEEecCC
Confidence            489999999999999997 57899999999987432 211        11121     2345888999999999999998


Q ss_pred             Chhhhccc-c-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          247 DKTTYHLI-N-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       247 t~~t~~li-~-~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      +++++.++ + ...+..+++|+++||++++...+.++|.+.+++..+.
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~  113 (291)
T TIGR01505        66 SPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID  113 (291)
T ss_pred             HHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence            88887765 3 3467889999999999999998889999999886433

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.23  E-value=4.1e-11  Score=112.48  Aligned_cols=123  Identities=20%  Similarity=0.216  Sum_probs=93.4

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      ++|||||+|.||+.+|+.+ ...|.+|++||+++... +..        ...+     .....++++++++||+|++|+|
T Consensus         3 ~~IgviG~G~mG~~~a~~l-~~~g~~v~~~d~~~~~~-~~~--------~~~g-----~~~~~~~~e~~~~~d~vi~~vp   67 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVYDRNPEAV-AEV--------IAAG-----AETASTAKAVAEQCDVIITMLP   67 (296)
T ss_pred             ceEEEEccCHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHH--------HHCC-----CeecCCHHHHHhcCCEEEEeCC
Confidence            4799999999999999997 57899999999987542 111        1112     1234578999999999999999


Q ss_pred             CChhhhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCC
Q 020301          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (328)
Q Consensus       246 lt~~t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP  303 (328)
                      .+.+++.++.  ...+..+++|.++||+++......+++.+.+.+..+...---|+-.+|
T Consensus        68 ~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~  127 (296)
T PRK11559         68 NSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP  127 (296)
T ss_pred             CHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence            8888887764  346788999999999999998888899999987654432223444333

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.22  E-value=3.3e-10  Score=110.74  Aligned_cols=105  Identities=25%  Similarity=0.357  Sum_probs=83.6

Q ss_pred             ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      +..+.|++++|+|+|.||+.+|+++ +++|++|+++|+++.....         +...|.      ...++++.++.+|+
T Consensus       197 ~~~l~GktVvViG~G~IG~~va~~a-k~~Ga~ViV~d~d~~R~~~---------A~~~G~------~~~~~~e~v~~aDV  260 (413)
T cd00401         197 DVMIAGKVAVVAGYGDVGKGCAQSL-RGQGARVIVTEVDPICALQ---------AAMEGY------EVMTMEEAVKEGDI  260 (413)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECChhhHHH---------HHhcCC------EEccHHHHHcCCCE
Confidence            3568999999999999999999996 8999999999987654221         111221      22457888999999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~  284 (328)
                      |+.+..    +.++++.+.|..||+|++++|++++++ +|..+|..
T Consensus       261 VI~atG----~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         261 FVTTTG----NKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             EEECCC----CHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            998743    567888999999999999999999887 88888764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.16  E-value=1.5e-10  Score=109.06  Aligned_cols=112  Identities=14%  Similarity=0.195  Sum_probs=90.0

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      ++|||||+|.||..+|+.| ...|.+|++||+++... ++..        ..+     .....+..+++++||+|++|+|
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l-~~~G~~V~v~d~~~~~~-~~~~--------~~g-----~~~~~s~~~~~~~aDvVi~~vp   66 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNL-LKQGHQLQVFDVNPQAV-DALV--------DKG-----ATPAASPAQAAAGAEFVITMLP   66 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHH--------HcC-----CcccCCHHHHHhcCCEEEEecC
Confidence            3799999999999999998 46799999999987542 2211        112     1234688899999999999999


Q ss_pred             CChhhhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       246 lt~~t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      ....++.++.  ...++.+++|.++||++++.....+.+.+.+.+..+.
T Consensus        67 ~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~  115 (296)
T PRK15461         67 NGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS  115 (296)
T ss_pred             CHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence            8777777764  3467789999999999999999999999999987654

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.15  E-value=2e-10  Score=108.20  Aligned_cols=113  Identities=19%  Similarity=0.288  Sum_probs=90.5

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc---CCEEEEc
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH  243 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~  243 (328)
                      +|||||+|.||+.+|+.| ...|.+|++||++++.. +..        ...+     .....++++++++   +|+|++|
T Consensus         2 ~Ig~IGlG~mG~~mA~~L-~~~g~~v~v~dr~~~~~-~~~--------~~~g-----~~~~~s~~~~~~~~~~advVi~~   66 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERL-REDGHEVVGYDVNQEAV-DVA--------GKLG-----ITARHSLEELVSKLEAPRTIWVM   66 (299)
T ss_pred             EEEEEcccHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHH--------HHCC-----CeecCCHHHHHHhCCCCCEEEEE
Confidence            699999999999999998 47899999999986532 111        1112     2234688898877   6999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEe
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalD  297 (328)
                      +|..+.++.++ +..+..+++|.++||+++....+...+.+.+++..+.  .+|
T Consensus        67 vp~~~~~~~v~-~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd  117 (299)
T PRK12490         67 VPAGEVTESVI-KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD  117 (299)
T ss_pred             ecCchHHHHHH-HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence            99877888887 4677889999999999999999999999999876543  366

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.11  E-value=2.1e-10  Score=108.99  Aligned_cols=119  Identities=22%  Similarity=0.218  Sum_probs=84.8

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ..|.|++|||||+|+||+++|+.| +.+|++|+++++......+.        ++..|     +. ..+.++++++||+|
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L-~~sG~~Vvv~~r~~~~s~~~--------A~~~G-----~~-~~s~~eaa~~ADVV   77 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNL-RDSGVDVVVGLREGSKSWKK--------AEADG-----FE-VLTVAEAAKWADVI   77 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHH-HHCCCEEEEEECCchhhHHH--------HHHCC-----Ce-eCCHHHHHhcCCEE
Confidence            468999999999999999999997 68999999887764332111        11112     11 24889999999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY  304 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~  304 (328)
                      ++++|.+.. ..+++++.+..|++|++| -.+.|-  +...+.      ..-+..+||+-..|.
T Consensus        78 vLaVPd~~~-~~V~~~~I~~~Lk~g~iL-~~a~G~--~i~~~~------~~p~~~~~Vi~vaPn  131 (330)
T PRK05479         78 MILLPDEVQ-AEVYEEEIEPNLKEGAAL-AFAHGF--NIHFGQ------IVPPADVDVIMVAPK  131 (330)
T ss_pred             EEcCCHHHH-HHHHHHHHHhcCCCCCEE-EECCCC--Chhhce------eccCCCCcEEEeCCC
Confidence            999996655 777778888999999988 555552  111111      112455677777774

>PLN02712 arogenate dehydrogenase

Probab=99.07  E-value=8.5e-10  Score=114.26  Aligned_cols=114  Identities=17%  Similarity=0.220  Sum_probs=86.6

Q ss_pred             cccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-cC
Q 020301          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EA  237 (328)
Q Consensus       159 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~a  237 (328)
                      .++++.+++|||||+|.||+.+|+.+ +.+|.+|++||++...  +.        +...|.     ....++++++. .+
T Consensus       363 ~~~~~~~~kIgIIGlG~mG~slA~~L-~~~G~~V~~~dr~~~~--~~--------a~~~Gv-----~~~~~~~el~~~~a  426 (667)
T PLN02712        363 CVNDGSKLKIAIVGFGNFGQFLAKTM-VKQGHTVLAYSRSDYS--DE--------AQKLGV-----SYFSDADDLCEEHP  426 (667)
T ss_pred             ccCCCCCCEEEEEecCHHHHHHHHHH-HHCcCEEEEEECChHH--HH--------HHHcCC-----eEeCCHHHHHhcCC
Confidence            35678999999999999999999997 6889999999997532  11        111121     23468888876 59


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      |+|++|+| ...+..++.+-.+..||+|++++|++.++-...+++.+.+..|
T Consensus       427 DvVILavP-~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~  477 (667)
T PLN02712        427 EVILLCTS-ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQD  477 (667)
T ss_pred             CEEEECCC-hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCC
Confidence            99999999 4778888877666679999999999998855555666555543

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.03  E-value=1.6e-09  Score=102.17  Aligned_cols=113  Identities=22%  Similarity=0.290  Sum_probs=89.8

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc---CCEEEEc
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH  243 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~  243 (328)
                      +|||||+|.||+.+|+.| ...|.+|.+||+++... ++.        .+.|     .....+++++++.   +|+|+++
T Consensus         2 ~Ig~IGlG~MG~~mA~~L-~~~g~~v~v~dr~~~~~-~~~--------~~~g-----~~~~~~~~e~~~~~~~~dvvi~~   66 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRL-LRGGHEVVGYDRNPEAV-EAL--------AEEG-----ATGADSLEELVAKLPAPRVVWLM   66 (301)
T ss_pred             EEEEEcccHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHH--------HHCC-----CeecCCHHHHHhhcCCCCEEEEE
Confidence            799999999999999998 57899999999987542 111        1112     2234588888876   6999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEe
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalD  297 (328)
                      +|..+.++.++ ...+..+++|.++||++++.......+.+.+++..+.  .+|
T Consensus        67 v~~~~~~~~v~-~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~d  117 (301)
T PRK09599         67 VPAGEITDATI-DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVD  117 (301)
T ss_pred             ecCCcHHHHHH-HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEe
Confidence            99877888877 4677889999999999999999999999999887654  346

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.98  E-value=1.9e-09  Score=101.43  Aligned_cols=104  Identities=30%  Similarity=0.417  Sum_probs=88.4

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      -+.||++.|.|||.+|+-+|+++ +++|++|++++..+-..++...+.|               ++.++++..+.+|+++
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~-rg~GA~ViVtEvDPI~AleA~MdGf---------------~V~~m~~Aa~~gDifi  269 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRL-RGMGARVIVTEVDPIRALEAAMDGF---------------RVMTMEEAAKTGDIFV  269 (420)
T ss_pred             eecCceEEEecccccchHHHHHh-hcCCCeEEEEecCchHHHHHhhcCc---------------EEEEhHHhhhcCCEEE
Confidence            48999999999999999999996 8999999999988877666544433               4568999999999998


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHH
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEH  285 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~a  285 (328)
                      .+    ..++++|..+.|..||+|+++-|.+.-.+ ||-++|.+.
T Consensus       270 T~----TGnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~  310 (420)
T COG0499         270 TA----TGNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEEL  310 (420)
T ss_pred             Ec----cCCcCccCHHHHHhccCCeEEecccccceeccHHHHHHh
Confidence            76    35689999999999999999999997776 777777643

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=98.95  E-value=4.6e-09  Score=104.97  Aligned_cols=128  Identities=12%  Similarity=0.143  Sum_probs=98.7

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc---CCEEEEc
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH  243 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~  243 (328)
                      +||+||+|.||+.+|++|+ .-|.+|.+|||++.+. +++.+..    ...|...  .....+++|+.+.   +|+|++|
T Consensus         8 ~IG~IGLG~MG~~mA~nL~-~~G~~V~V~NRt~~k~-~~l~~~~----~~~Ga~~--~~~a~s~~e~v~~l~~~dvIi~~   79 (493)
T PLN02350          8 RIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKV-DETVERA----KKEGNLP--LYGFKDPEDFVLSIQKPRSVIIL   79 (493)
T ss_pred             CEEEEeeHHHHHHHHHHHH-hCCCeEEEECCCHHHH-HHHHHhh----hhcCCcc--cccCCCHHHHHhcCCCCCEEEEE
Confidence            6999999999999999985 6799999999987643 2222110    0012111  1134688888876   9999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCC
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP  303 (328)
                      +|..+.++.++ ...+..+++|.++||++....-+...+.+.+++..+.-...=|.-.++
T Consensus        80 v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~  138 (493)
T PLN02350         80 VKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE  138 (493)
T ss_pred             CCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence            99999999988 568889999999999999999999999999998877655555665554

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.92  E-value=4.1e-08  Score=91.37  Aligned_cols=170  Identities=16%  Similarity=0.193  Sum_probs=108.6

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 020301           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (328)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~  102 (328)
                      +..++.|.+++....++ ..+++++.+.+.     +..|+++++.+  ..+++. +++.++-.  |=       +|.+--
T Consensus        55 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~--KD-------VDGl~~  124 (285)
T PRK14189         55 KACEDNGFHSLKDRYPA-DLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPE--KD-------VDGFHV  124 (285)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcc--cC-------cccCCh
Confidence            34556788887765543 346777776553     25679999864  345543 44444322  21       111110


Q ss_pred             hHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHH-HHHHH
Q 020301          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYA  181 (328)
Q Consensus       103 ~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~I-G~~vA  181 (328)
                         ...|-...+.++ ....++.-++.++    ++                     .+.++.||++.|||.|.+ |+.+|
T Consensus       125 ---~n~g~l~~~~~~-~~PcTp~aii~lL----~~---------------------~~i~l~Gk~vvViGrs~iVGkPla  175 (285)
T PRK14189        125 ---ANAGALMTGQPL-FRPCTPYGVMKML----ES---------------------IGIPLRGAHAVVIGRSNIVGKPMA  175 (285)
T ss_pred             ---hhhhHhhCCCCC-CcCCCHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCCccHHHHH
Confidence               011111122222 2344555444322    11                     235799999999999999 99999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhc
Q 020301          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (328)
Q Consensus       182 ~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~  261 (328)
                      .+| ...|++|+.++..                            ..++.+.+++||+|+.++|    +.++|+.   +.
T Consensus       176 ~lL-~~~~atVt~~hs~----------------------------t~~l~~~~~~ADIVV~avG----~~~~i~~---~~  219 (285)
T PRK14189        176 MLL-LQAGATVTICHSK----------------------------TRDLAAHTRQADIVVAAVG----KRNVLTA---DM  219 (285)
T ss_pred             HHH-HHCCCEEEEecCC----------------------------CCCHHHHhhhCCEEEEcCC----CcCccCH---HH
Confidence            997 6899999987532                            1478899999999999999    4578887   55


Q ss_pred             CCCCcEEEEcCCCc
Q 020301          262 MKKEAILVNCSRGP  275 (328)
Q Consensus       262 mk~ga~lIN~aRG~  275 (328)
                      +|+|+++||++--.
T Consensus       220 ik~gavVIDVGin~  233 (285)
T PRK14189        220 VKPGATVIDVGMNR  233 (285)
T ss_pred             cCCCCEEEEccccc
Confidence            78999999998544

>PLN02256 arogenate dehydrogenase

Probab=98.91  E-value=5.5e-09  Score=98.73  Aligned_cols=109  Identities=15%  Similarity=0.202  Sum_probs=80.2

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-hcCCEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVIS  241 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~  241 (328)
                      -.++++||||+|.||+.+|+.+ +..|.+|++||++....   ..       ...|.     ....++++++ ..+|+|+
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L-~~~G~~V~~~d~~~~~~---~a-------~~~gv-----~~~~~~~e~~~~~aDvVi   97 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTF-VKQGHTVLATSRSDYSD---IA-------AELGV-----SFFRDPDDFCEEHPDVVL   97 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECccHHH---HH-------HHcCC-----eeeCCHHHHhhCCCCEEE
Confidence            4667899999999999999997 67899999999985321   11       11121     1245788876 4799999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      +|+|. ..+..++.+-....+++++++++++.+.-+..+++.+.+..
T Consensus        98 lavp~-~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~  143 (304)
T PLN02256         98 LCTSI-LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE  143 (304)
T ss_pred             EecCH-HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence            99994 46777775543667899999999999765556666666644

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=98.89  E-value=6.6e-09  Score=97.69  Aligned_cols=113  Identities=15%  Similarity=0.114  Sum_probs=87.6

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl  246 (328)
                      +|||||+|+||+.+|+.| ...|.+|.+||+++..  +..        ...|     .....+..++.++||+|++|+|.
T Consensus         2 ~Ig~IGlG~MG~~ma~~L-~~~G~~v~v~~~~~~~--~~~--------~~~g-----~~~~~s~~~~~~~advVi~~v~~   65 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINL-ARAGHQLHVTTIGPVA--DEL--------LSLG-----AVSVETARQVTEASDIIFIMVPD   65 (292)
T ss_pred             eEEEEccCHHHHHHHHHH-HHCCCeEEEEeCCHhH--HHH--------HHcC-----CeecCCHHHHHhcCCEEEEeCCC
Confidence            699999999999999997 4678999999987532  221        1112     22346788999999999999998


Q ss_pred             ChhhhccccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEe
Q 020301          247 DKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (328)
Q Consensus       247 t~~t~~li~~--~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalD  297 (328)
                      .++.+..+..  ..++.+++|.++|+++....-....+.+.+++..+.  .+|
T Consensus        66 ~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vd  116 (292)
T PRK15059         66 TPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLD  116 (292)
T ss_pred             hHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEE
Confidence            8787776632  357778999999999998888888899998875433  455

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.86  E-value=1e-08  Score=97.19  Aligned_cols=97  Identities=24%  Similarity=0.246  Sum_probs=69.5

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      |.||+|||||+|+||+++|+.| +.+|++|+++++......+..        ...|.      ...+..+++++||+|++
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L-~~sG~~Viv~~~~~~~~~~~a--------~~~Gv------~~~s~~ea~~~ADiVvL   65 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNL-RDSGLNVIVGLRKGGASWKKA--------TEDGF------KVGTVEEAIPQADLIMN   65 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHH-HHCCCeEEEEECcChhhHHHH--------HHCCC------EECCHHHHHhcCCEEEE
Confidence            5789999999999999999997 688999887665433222211        11121      12468899999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~  276 (328)
                      ++|... ....+.++....|+++. +|.++-|--
T Consensus        66 aVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~   97 (314)
T TIGR00465        66 LLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFN   97 (314)
T ss_pred             eCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCcc
Confidence            999432 34455566778898886 788887753

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.86  E-value=7e-08  Score=90.42  Aligned_cols=168  Identities=19%  Similarity=0.212  Sum_probs=105.6

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      .-++.|.+.+....++ ..+++++.+.+.     +..|+++++.+  ..+++. +++...-.  |=|-    |+....+-
T Consensus        57 ~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~g  129 (301)
T PRK14194         57 RAEEAGIRSLEHRLPA-DTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPL--KDVD----GFHSENVG  129 (301)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCch--hccC----ccChhhhh
Confidence            3445688776655543 346777776653     25689999864  345543 34433222  2110    22111111


Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecC-HHHHHHHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR  182 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G-~IG~~vA~  182 (328)
                      ..      ..+.++ ....++.-++.++-    +                     .+.++.||+++|||.| .+|+.+|.
T Consensus       130 ~l------~~~~~~-~~PcTp~aii~lL~----~---------------------~~i~l~Gk~V~vIG~s~ivG~PmA~  177 (301)
T PRK14194        130 GL------SQGRDV-LTPCTPSGCLRLLE----D---------------------TCGDLTGKHAVVIGRSNIVGKPMAA  177 (301)
T ss_pred             HH------hcCCCC-CCCCcHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCCccHHHHHH
Confidence            11      111222 33445555443321    1                     2358999999999996 99999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (328)
Q Consensus       183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m  262 (328)
                      +| ..-|++|.+|++..                            .++.++.++||+|+++++..    +++....   +
T Consensus       178 ~L-~~~gatVtv~~~~t----------------------------~~l~e~~~~ADIVIsavg~~----~~v~~~~---i  221 (301)
T PRK14194        178 LL-LQAHCSVTVVHSRS----------------------------TDAKALCRQADIVVAAVGRP----RLIDADW---L  221 (301)
T ss_pred             HH-HHCCCEEEEECCCC----------------------------CCHHHHHhcCCEEEEecCCh----hcccHhh---c
Confidence            98 46799999997642                            36889999999999999853    4555554   8


Q ss_pred             CCCcEEEEcCCC
Q 020301          263 KKEAILVNCSRG  274 (328)
Q Consensus       263 k~ga~lIN~aRG  274 (328)
                      |+|+++||++--
T Consensus       222 k~GaiVIDvgin  233 (301)
T PRK14194        222 KPGAVVIDVGIN  233 (301)
T ss_pred             cCCcEEEEeccc
Confidence            999999999843

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=98.86  E-value=1.4e-08  Score=101.20  Aligned_cols=128  Identities=15%  Similarity=0.233  Sum_probs=97.3

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh---cCCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDiV~l  242 (328)
                      .+|||||+|.||+.+|++| ..-|.+|.+|||+++... ++.+.    ....+.   ......+++|+++   ++|+|++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL-~~~G~~V~v~dr~~~~~~-~l~~~----~~~~g~---~i~~~~s~~e~v~~l~~~d~Iil   72 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNI-ASRGFKISVYNRTYEKTE-EFVKK----AKEGNT---RVKGYHTLEELVNSLKKPRKVIL   72 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHH-HHCCCeEEEEeCCHHHHH-HHHHh----hhhcCC---cceecCCHHHHHhcCCCCCEEEE
Confidence            4799999999999999998 477999999999876432 11110    001121   1123468999887   4899999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP  303 (328)
                      ++|....++.++ ++.+..+++|.++||.+.+..-|...+.+.+++..+.-...=|.-.++
T Consensus        73 ~v~~~~~v~~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~  132 (470)
T PTZ00142         73 LIKAGEAVDETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE  132 (470)
T ss_pred             EeCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence            999888999988 567888999999999999999999999999998777655444555443

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=98.84  E-value=2.1e-08  Score=94.54  Aligned_cols=109  Identities=19%  Similarity=0.286  Sum_probs=83.8

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH---hhcCCEEEEc
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISLH  243 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDiV~l~  243 (328)
                      +|||||+|.||..+|+.| ...|.+|.+||+++... ++.        .+.+..     ...+++++   +.++|+|+++
T Consensus         2 ~Ig~IGlG~mG~~la~~L-~~~g~~V~~~dr~~~~~-~~l--------~~~g~~-----~~~s~~~~~~~~~~~dvIi~~   66 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRL-AKRGHDCVGYDHDQDAV-KAM--------KEDRTT-----GVANLRELSQRLSAPRVVWVM   66 (298)
T ss_pred             EEEEEcchHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHH--------HHcCCc-----ccCCHHHHHhhcCCCCEEEEE
Confidence            799999999999999998 46799999999987542 221        111211     12355554   4568999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      +|.. .++.++ ++....+++|.++||++.+...+...+.+.+++..+.
T Consensus        67 vp~~-~~~~v~-~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~  113 (298)
T TIGR00872        67 VPHG-IVDAVL-EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH  113 (298)
T ss_pred             cCch-HHHHHH-HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence            9976 778877 5677888999999999999888999999988876554

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN02858 fructose-bisphosphate aldolase

Probab=98.83  E-value=1.4e-08  Score=112.54  Aligned_cols=109  Identities=20%  Similarity=0.281  Sum_probs=89.5

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      .++|||||+|.||..+|++| ...|.+|++||+++... +.+        ...+.     ....+..+++++||+|++|+
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L-~~~G~~V~v~dr~~~~~-~~l--------~~~Ga-----~~~~s~~e~~~~aDvVi~~V  388 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHL-LKSNFSVCGYDVYKPTL-VRF--------ENAGG-----LAGNSPAEVAKDVDVLVIMV  388 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH--------HHcCC-----eecCCHHHHHhcCCEEEEec
Confidence            47899999999999999998 57899999999987542 211        11121     12468899999999999999


Q ss_pred             CCChhhhccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          245 VLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       245 plt~~t~~li--~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      |..++++.++  +...+..+++|.++||++....-..+.+.+.+++
T Consensus       389 ~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~  434 (1378)
T PLN02858        389 ANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLEN  434 (1378)
T ss_pred             CChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence            9888888887  3567889999999999999998888889998887

>PLN02858 fructose-bisphosphate aldolase

Probab=98.82  E-value=1.7e-08  Score=111.90  Aligned_cols=120  Identities=15%  Similarity=0.159  Sum_probs=94.7

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      ..++||+||+|.||..+|++|+ .-|.+|.+||+++... +++        ...|     .....+..|+.++||+|++|
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~-~~G~~v~v~dr~~~~~-~~l--------~~~G-----a~~~~s~~e~a~~advVi~~   67 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLL-RSGFKVQAFEISTPLM-EKF--------CELG-----GHRCDSPAEAAKDAAALVVV   67 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHH-HCCCeEEEEcCCHHHH-HHH--------HHcC-----CeecCCHHHHHhcCCEEEEE
Confidence            3568999999999999999984 6799999999986542 221        1112     23357899999999999999


Q ss_pred             CCCChhhhccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeC
Q 020301          244 PVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV  298 (328)
Q Consensus       244 ~plt~~t~~li--~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV  298 (328)
                      +|..+..+.++  ....+..+++|.++|+++....-....+.+.+++..-....+|.
T Consensus        68 l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa  124 (1378)
T PLN02858         68 LSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA  124 (1378)
T ss_pred             cCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence            99988888886  35678889999999999999988899999999875411235663

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.78  E-value=2.5e-08  Score=96.77  Aligned_cols=103  Identities=19%  Similarity=0.362  Sum_probs=75.3

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      .+.++++.|+|.|.+|+.+++.+ +.+|++|.++|+++.. .+.....++..      .........++.+.++++|+|+
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a-~~lGa~V~v~d~~~~~-~~~l~~~~g~~------v~~~~~~~~~l~~~l~~aDvVI  235 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMA-NGLGATVTILDINIDR-LRQLDAEFGGR------IHTRYSNAYEIEDAVKRADLLI  235 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHH-HHCCCeEEEEECCHHH-HHHHHHhcCce------eEeccCCHHHHHHHHccCCEEE
Confidence            36788999999999999999996 7999999999998643 22211111100      0000111235778899999999


Q ss_pred             EcCCCC-hhhhccccHHHHhcCCCCcEEEEcC
Q 020301          242 LHPVLD-KTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       242 l~~plt-~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .+++.+ ..+..+++++.++.||+++++||++
T Consensus       236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             EccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence            998653 3456789999999999999999986

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=98.77  E-value=1.9e-08  Score=94.24  Aligned_cols=111  Identities=21%  Similarity=0.219  Sum_probs=83.9

Q ss_pred             EEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChh
Q 020301          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (328)
Q Consensus       170 IiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~  249 (328)
                      |||+|.||..+|+.| ...|.+|.+|||++... +..        ...+     .....++.+++++||+|++|+|...+
T Consensus         1 ~IGlG~mG~~mA~~L-~~~G~~V~v~dr~~~~~-~~l--------~~~g-----~~~~~s~~~~~~~advVil~vp~~~~   65 (288)
T TIGR01692         1 FIGLGNMGGPMAANL-LKAGHPVRVFDLFPDAV-EEA--------VAAG-----AQAAASPAEAAEGADRVITMLPAGQH   65 (288)
T ss_pred             CCcccHhHHHHHHHH-HhCCCeEEEEeCCHHHH-HHH--------HHcC-----CeecCCHHHHHhcCCEEEEeCCChHH
Confidence            689999999999998 47799999999987542 111        1112     12345889999999999999997777


Q ss_pred             hhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEe
Q 020301          250 TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (328)
Q Consensus       250 t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalD  297 (328)
                      ++.++.  ...+..+++|.++||++....-....+.+.+++..+.  .+|
T Consensus        66 ~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd  113 (288)
T TIGR01692        66 VISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD  113 (288)
T ss_pred             HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence            777763  4567789999999999977766667788888764433  466

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.77  E-value=2.3e-08  Score=94.57  Aligned_cols=83  Identities=24%  Similarity=0.330  Sum_probs=67.7

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .+++|||||+|.+|+.+|++| ...|.+|.+|+|+..                           .++++++++||+|+++
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l-~~~G~~V~~~~r~~~---------------------------~~~~~~~~~advvi~~   54 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLA-SANGHRVRVWSRRSG---------------------------LSLAAVLADADVIVSA   54 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHH-HHCCCEEEEEeCCCC---------------------------CCHHHHHhcCCEEEEE
Confidence            457899999999999999997 578999999998642                           4678899999999999


Q ss_pred             CCCChhhhccccHHHHh-cCCCCcEEEEcCCCcc
Q 020301          244 PVLDKTTYHLINKERLA-TMKKEAILVNCSRGPV  276 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~-~mk~ga~lIN~aRG~~  276 (328)
                      +|. +..+.+++. ... .+++++++|++++|-.
T Consensus        55 vp~-~~~~~v~~~-l~~~~~~~~~ivi~~s~gi~   86 (308)
T PRK14619         55 VSM-KGVRPVAEQ-VQALNLPPETIIVTATKGLD   86 (308)
T ss_pred             CCh-HHHHHHHHH-HHHhcCCCCcEEEEeCCccc
Confidence            996 577777743 222 4789999999988543

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.77  E-value=7.8e-08  Score=91.43  Aligned_cols=130  Identities=17%  Similarity=0.208  Sum_probs=88.8

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHH--HHHHhhhhhhhhcCCCC----CccccccCCHHHHhhcCCE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQ----PVTWKRASSMDEVLREADV  239 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~l~ell~~aDi  239 (328)
                      ++|||||.|.||..+|..++ ..|++|..||+++....  ........+.+.+.+..    ........++++.++.||+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a-~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl   86 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARAL-AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF   86 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence            68999999999999999975 78999999999875321  11111111111112211    1122345689999999999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~  299 (328)
                      |+-++|.+.+.+.-+-++.-+.++++++|- ++.. -+...++.++++. .=+..++=.|
T Consensus        87 ViEavpE~l~vK~~lf~~l~~~~~~~aIla-SnTS-~l~~s~la~~~~~-p~R~~g~Hff  143 (321)
T PRK07066         87 IQESAPEREALKLELHERISRAAKPDAIIA-SSTS-GLLPTDFYARATH-PERCVVGHPF  143 (321)
T ss_pred             EEECCcCCHHHHHHHHHHHHHhCCCCeEEE-ECCC-ccCHHHHHHhcCC-cccEEEEecC
Confidence            999999999999888888889999999554 4333 3567778887754 2233444333

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.77  E-value=2.4e-08  Score=92.12  Aligned_cols=95  Identities=23%  Similarity=0.438  Sum_probs=79.9

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      -+.||.+.|.|||.+|+..|+.| ++||++|++....+-..++...+.|               .+++++|++++.|+++
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaL-kg~g~~VivTEiDPI~ALQAaMeG~---------------~V~tm~ea~~e~difV  274 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQAL-KGFGARVIVTEIDPICALQAAMEGY---------------EVTTLEEAIREVDIFV  274 (434)
T ss_pred             eecccEEEEeccCccchhHHHHH-hhcCcEEEEeccCchHHHHHHhhcc---------------EeeeHHHhhhcCCEEE
Confidence            37899999999999999999997 8999999999887766555433322               4579999999999998


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~  276 (328)
                      .+    ...+.+|..+.|++||.++++.|++.-.+
T Consensus       275 Tt----TGc~dii~~~H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  275 TT----TGCKDIITGEHFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             Ec----cCCcchhhHHHHHhCcCCcEEeccccccc
Confidence            65    45688999999999999999999987554

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.76  E-value=1.1e-07  Score=89.38  Aligned_cols=118  Identities=25%  Similarity=0.253  Sum_probs=79.4

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHhhhhhhhhcCCCCC-------cc-ccccCCHHHHhh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP-------VT-WKRASSMDEVLR  235 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~-~~~~~~l~ell~  235 (328)
                      ++|||||.|.||..+|+.++ ..|.+|++||+++.....  +.....-+.+.+.+...       .+ .....+. +.++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~   82 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAA-AAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR   82 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence            57999999999999999984 779999999998754211  00000000011111100       00 1112344 5689


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHc
Q 020301          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lI-N~aRG~~vde~aL~~aL~~  288 (328)
                      .||+|+.|+|..++.+..+-.+..+.++++++|+ |+|.-   ....+.+.+..
T Consensus        83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i---~~~~l~~~~~~  133 (295)
T PLN02545         83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI---SITRLASATQR  133 (295)
T ss_pred             CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC---CHHHHHhhcCC
Confidence            9999999999999998888787778899999987 77664   45566666653

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.76  E-value=2.5e-08  Score=84.81  Aligned_cols=94  Identities=31%  Similarity=0.333  Sum_probs=64.4

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      |.||||+|||||..|++-|..| +..|.+|++-.+..++..+        .++++|.      ...+.+|+.++||+|.+
T Consensus         2 l~~k~IAViGyGsQG~a~AlNL-rDSG~~V~Vglr~~s~s~~--------~A~~~Gf------~v~~~~eAv~~aDvV~~   66 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNL-RDSGVNVIVGLREGSASWE--------KAKADGF------EVMSVAEAVKKADVVML   66 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHH-HHCC-EEEEEE-TTCHHHH--------HHHHTT-------ECCEHHHHHHC-SEEEE
T ss_pred             cCCCEEEEECCChHHHHHHHHH-HhCCCCEEEEecCCCcCHH--------HHHHCCC------eeccHHHHHhhCCEEEE
Confidence            6799999999999999999998 7889999988776553211        1233343      34689999999999999


Q ss_pred             cCCCChhh-hccccHHHHhcCCCCcEEEEcCCC
Q 020301          243 HPVLDKTT-YHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       243 ~~plt~~t-~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      .+|  ++. ..++.++....||+|+.|+ .+.|
T Consensus        67 L~P--D~~q~~vy~~~I~p~l~~G~~L~-fahG   96 (165)
T PF07991_consen   67 LLP--DEVQPEVYEEEIAPNLKPGATLV-FAHG   96 (165)
T ss_dssp             -S---HHHHHHHHHHHHHHHS-TT-EEE-ESSS
T ss_pred             eCC--hHHHHHHHHHHHHhhCCCCCEEE-eCCc
Confidence            999  443 4556688888999999765 3444

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK08655 prephenate dehydrogenase; Provisional

Probab=98.76  E-value=6.1e-08  Score=96.05  Aligned_cols=133  Identities=17%  Similarity=0.258  Sum_probs=91.8

Q ss_pred             EEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       167 tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      +++||| +|.||+.+|+.| +..|.+|.+||+++... .+..       ...+.     ....++++.+++||+|++|+|
T Consensus         2 kI~IIGG~G~mG~slA~~L-~~~G~~V~v~~r~~~~~-~~~a-------~~~gv-----~~~~~~~e~~~~aDvVIlavp   67 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFL-KEKGFEVIVTGRDPKKG-KEVA-------KELGV-----EYANDNIDAAKDADIVIISVP   67 (437)
T ss_pred             EEEEEecCCHHHHHHHHHH-HHCCCEEEEEECChHHH-HHHH-------HHcCC-----eeccCHHHHhccCCEEEEecC
Confidence            799998 899999999997 67899999999876431 1111       11121     123578888999999999999


Q ss_pred             CChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCC--CCCCcccCCCeEEcCCC
Q 020301          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPHI  321 (328)
Q Consensus       246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~--~~~~L~~~~nvilTPHi  321 (328)
                      . ..+..++ ++....+++++++++++.......+++.+.+..|.      .+...-|.  +..+++.-..+++||+-
T Consensus        68 ~-~~~~~vl-~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~------~~V~~HPmaGp~~~~~~g~~~il~p~~  137 (437)
T PRK08655         68 I-NVTEDVI-KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGV------EILPTHPMFGPRTPSLKGQVVILTPTE  137 (437)
T ss_pred             H-HHHHHHH-HHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCC------EEEEcCCCCCCCCcccCCCEEEEecCC
Confidence            5 4556655 55667789999999999865455556665554321      12222343  33467777889999974

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.75  E-value=1.5e-07  Score=91.10  Aligned_cols=122  Identities=18%  Similarity=0.220  Sum_probs=83.3

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      .-.||+|||+ |.||+++|+.|.+.+|.+|++||+...                         ...++++.+++||+|++
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-------------------------~~~~~~~~v~~aDlVil   57 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-------------------------GSLDPATLLQRADVLIF   57 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-------------------------ccCCHHHHhcCCCEEEE
Confidence            4568999999 999999999985346999999998521                         12467888999999999


Q ss_pred             cCCCChhhhccccHH--HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC---CCCcccCCCeEE
Q 020301          243 HPVLDKTTYHLINKE--RLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM---KPGLSEMKNAIV  317 (328)
Q Consensus       243 ~~plt~~t~~li~~~--~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~---~~~L~~~~nvil  317 (328)
                      |+|- ..+..++.+-  ....+|+++++++++.-.    ....+++....     .++...-|..   .+.+++-.++++
T Consensus        58 avPv-~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK----~~i~~~~~~~~-----~~fVG~HPMaG~E~s~lf~g~~~il  127 (370)
T PRK08818         58 SAPI-RHTAALIEEYVALAGGRAAGQLWLDVTSIK----QAPVAAMLASQ-----AEVVGLHPMTAPPKSPTLKGRVMVV  127 (370)
T ss_pred             eCCH-HHHHHHHHHHhhhhcCCCCCeEEEECCCCc----HHHHHHHHhcC-----CCEEeeCCCCCCCCCcccCCCeEEE
Confidence            9993 4455555321  123489999999998754    22333332211     1233335542   246777788999


Q ss_pred             cCC
Q 020301          318 VPH  320 (328)
Q Consensus       318 TPH  320 (328)
                      ||.
T Consensus       128 tp~  130 (370)
T PRK08818        128 CEA  130 (370)
T ss_pred             eCC
Confidence            986

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=98.75  E-value=5.6e-08  Score=96.91  Aligned_cols=124  Identities=23%  Similarity=0.284  Sum_probs=90.8

Q ss_pred             EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh---hcCCEEEEcC
Q 020301          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISLHP  244 (328)
Q Consensus       168 vgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiV~l~~  244 (328)
                      |||||+|.||+.+|++|+ .-|.+|.+|||++... ++..+.+     ..+   .......+++++.   +++|+|++++
T Consensus         2 IG~IGLG~MG~~mA~nL~-~~G~~V~v~drt~~~~-~~l~~~~-----~~g---~~~~~~~s~~e~v~~l~~~dvIil~v   71 (467)
T TIGR00873         2 IGVIGLAVMGSNLALNMA-DHGFTVSVYNRTPEKT-DEFLAEH-----AKG---KKIVGAYSIEEFVQSLERPRKIMLMV   71 (467)
T ss_pred             EEEEeeHHHHHHHHHHHH-hcCCeEEEEeCCHHHH-HHHHhhc-----cCC---CCceecCCHHHHHhhcCCCCEEEEEC
Confidence            899999999999999984 6799999999987643 2221110     001   0112235677766   4689999999


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCC
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE  302 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~E  302 (328)
                      |..+.+..++ +..+..+++|.++||++....-|...+.+.+++..+.-...=|.-.+
T Consensus        72 ~~~~~v~~Vi-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~  128 (467)
T TIGR00873        72 KAGAPVDAVI-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGE  128 (467)
T ss_pred             CCcHHHHHHH-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCH
Confidence            9878888877 56778899999999999988889889999998766654433344443

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.74  E-value=1.3e-08  Score=99.37  Aligned_cols=97  Identities=21%  Similarity=0.242  Sum_probs=65.6

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCC------chhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY------QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  234 (328)
                      ..|.||||+|||||++|+.-|..| +..|.+|.+--|.      .....         .+..+|     + ...+++|++
T Consensus        32 ~~LkgKtIaIIGyGSqG~AqAlNL-rdSGvnVvvglr~~~id~~~~s~~---------kA~~dG-----F-~v~~~~Ea~   95 (487)
T PRK05225         32 SYLKGKKIVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASWR---------KATENG-----F-KVGTYEELI   95 (487)
T ss_pred             HHhCCCEEEEEccCHHHHHHhCCC-ccccceeEEeccccccccccchHH---------HHHhcC-----C-ccCCHHHHH
Confidence            569999999999999999544443 3444444421111      11110         011122     2 346899999


Q ss_pred             hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc
Q 020301          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (328)
Q Consensus       235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~  276 (328)
                      ++||+|++.+|.+ + ++.++++.+..||+|++|. .|.|--
T Consensus        96 ~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHGFn  134 (487)
T PRK05225         96 PQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHGFN  134 (487)
T ss_pred             HhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCCce
Confidence            9999999999988 4 7778899999999999765 455543

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.74  E-value=1.6e-06  Score=86.96  Aligned_cols=225  Identities=20%  Similarity=0.211  Sum_probs=120.5

Q ss_pred             HHHHHhCCCeEEEecCC--CCCCCHHHHHHH---h-----cCCccEEEecCCCCccHHHHHHhhccCCceEEEccccCCc
Q 020301           30 INLLIEQDCRVEICTQK--KTILSVEDIIAL---I-----GDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNN   99 (328)
Q Consensus        30 ~~~l~~~~~~~~~~~~~--~~~~~~e~~~~~---~-----~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d~   99 (328)
                      .+.|.+.|+++.+....  ...+++++..+.   +     -+++|.|+- ...+ +.+.++.++. |-.+++...-..|.
T Consensus        22 v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~~adiIlk-V~~P-~~~e~~~l~~-g~tli~~l~p~~n~   98 (511)
T TIGR00561        22 VQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFWQSDIILK-VNAP-SDAEIAELPA-GKALVSFIWPAQNP   98 (511)
T ss_pred             HHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchhcCCEEEE-eCCC-CHHHHHhcCC-CCEEEEEcCccCCH
Confidence            56677778887664431  223455555431   0     024666652 2222 3455666654 32344443333333


Q ss_pred             cChhHHHhCCceEecCCCCC--C--------chHHHHHHHHHHHHHhcHHHHHHHHHcCCC-CCCCCCcccccccCCCEE
Q 020301          100 VDVNAANKYGIAVGNTPGVL--T--------ETTAELAASLSLAAARRIVEADEFMRAGLY-DGWLPNLFVGNLLKGQTV  168 (328)
Q Consensus       100 id~~~~~~~gI~v~n~p~~~--~--------~~vAE~al~~~L~~~R~~~~~~~~~~~g~w-~~w~~~~~~~~~l~g~tv  168 (328)
                      =-++++.++||.+..-.-.-  +        .++|+.+=      .|-.....+.+  |.+ .+...  .. ..+.+.++
T Consensus        99 ~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAG------y~Avi~Aa~~l--gr~~~g~~t--aa-g~vp~akV  167 (511)
T TIGR00561        99 ELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAG------YRAIIEAAHEF--GRFFTGQIT--AA-GKVPPAKV  167 (511)
T ss_pred             HHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHH------HHHHHHHHHHh--hhhcCCcee--cC-CCCCCCEE
Confidence            34567788888876622111  1        12333321      11111111111  111 00000  01 14567899


Q ss_pred             EEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhh-----hcCCCCCccccccCC----------HHHH
Q 020301          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL-----KANGEQPVTWKRASS----------MDEV  233 (328)
Q Consensus       169 gIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~----------l~el  233 (328)
                      .|+|+|.+|...++.+ +++|++|.++|++.... + ....++...     .+++....++....+          +.+.
T Consensus       168 lViGaG~iGl~Aa~~a-k~lGA~V~v~d~~~~rl-e-~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~  244 (511)
T TIGR00561       168 LVIGAGVAGLAAIGAA-NSLGAIVRAFDTRPEVK-E-QVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQ  244 (511)
T ss_pred             EEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-H-HHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHH
Confidence            9999999999999985 79999999999987532 2 222222111     000110111111111          4566


Q ss_pred             hhcCCEEEEcC--CCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          234 LREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       234 l~~aDiV~l~~--plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      ++++|+|+.++  |.. ....++.++.++.||||+++||+|
T Consensus       245 ~~~~DIVI~TalipG~-~aP~Lit~emv~~MKpGsvIVDlA  284 (511)
T TIGR00561       245 AKEVDIIITTALIPGK-PAPKLITEEMVDSMKAGSVIVDLA  284 (511)
T ss_pred             hCCCCEEEECcccCCC-CCCeeehHHHHhhCCCCCEEEEee
Confidence            78899998776  322 234789999999999999999996

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.74  E-value=3.4e-07  Score=85.92  Aligned_cols=168  Identities=18%  Similarity=0.212  Sum_probs=104.3

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccH-HHHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      ..++.|.+++....+. ..+++|+.+.+..     +.|+++++.+  ..+++ .+++..+-.  |=|-    |+..+.+ 
T Consensus        56 ~a~~~Gi~~~~~~l~~-~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~--KDVD----Gl~~~n~-  127 (296)
T PRK14188         56 QTKEAGMASFEHKLPA-DTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPE--KDVD----GLHVVNA-  127 (296)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcc--cccc----cCChhhH-
Confidence            3456688776655433 3577777766541     4579999864  34444 344433222  1110    1111111 


Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEe-cCHHHHHHHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYAR  182 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG-~G~IG~~vA~  182 (328)
                           |-...+.++ ....++.-++.++=    .                     .+.++.||+++||| .|.+|+.+|.
T Consensus       128 -----g~l~~~~~~-~~PcTp~ai~~ll~----~---------------------~~i~~~Gk~V~viGrs~~mG~PmA~  176 (296)
T PRK14188        128 -----GRLATGETA-LVPCTPLGCMMLLR----R---------------------VHGDLSGLNAVVIGRSNLVGKPMAQ  176 (296)
T ss_pred             -----HHHhCCCCC-CcCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEEcCCcchHHHHHH
Confidence                 111112222 34455555443321    1                     12479999999999 9999999999


Q ss_pred             HHHhcCCcEEEEEc-CCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhc
Q 020301          183 MMVEGFKMNLIYYD-LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (328)
Q Consensus       183 ~l~~~fg~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~  261 (328)
                      +|. .-|+.|.+|+ ++                             .++++++++||+|+++++...    ++....   
T Consensus       177 ~L~-~~g~tVtv~~~rT-----------------------------~~l~e~~~~ADIVIsavg~~~----~v~~~~---  219 (296)
T PRK14188        177 LLL-AANATVTIAHSRT-----------------------------RDLPAVCRRADILVAAVGRPE----MVKGDW---  219 (296)
T ss_pred             HHH-hCCCEEEEECCCC-----------------------------CCHHHHHhcCCEEEEecCChh----hcchhe---
Confidence            984 6799999995 32                             257889999999999999543    454443   


Q ss_pred             CCCCcEEEEcCCCc
Q 020301          262 MKKEAILVNCSRGP  275 (328)
Q Consensus       262 mk~ga~lIN~aRG~  275 (328)
                      +|+|+++||++--.
T Consensus       220 lk~GavVIDvGin~  233 (296)
T PRK14188        220 IKPGATVIDVGINR  233 (296)
T ss_pred             ecCCCEEEEcCCcc
Confidence            89999999997533

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.73  E-value=3e-07  Score=81.79  Aligned_cols=110  Identities=20%  Similarity=0.337  Sum_probs=79.1

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-cCCE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADV  239 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDi  239 (328)
                      .++.|++++|+|+|++|+.+|+.| ..+|++|+++|++... .+++.+.|       +     .. ..+.++++. +||+
T Consensus        24 ~~l~gk~v~I~G~G~vG~~~A~~L-~~~G~~Vvv~D~~~~~-~~~~~~~~-------g-----~~-~v~~~~l~~~~~Dv   88 (200)
T cd01075          24 DSLEGKTVAVQGLGKVGYKLAEHL-LEEGAKLIVADINEEA-VARAAELF-------G-----AT-VVAPEEIYSVDADV   88 (200)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHc-------C-----CE-EEcchhhccccCCE
Confidence            578999999999999999999997 6899999999988643 22221111       1     11 123456664 7999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      ++.|..     .++|+++.++.|+ ..+++.-+-+.+-| ..-.+.|++..+.
T Consensus        89 ~vp~A~-----~~~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~  134 (200)
T cd01075          89 FAPCAL-----GGVINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL  134 (200)
T ss_pred             EEeccc-----ccccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence            986655     4689999999997 55788888888776 4455566665443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PLN02712 arogenate dehydrogenase

Probab=98.72  E-value=4.2e-08  Score=101.82  Aligned_cols=109  Identities=16%  Similarity=0.184  Sum_probs=76.7

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-hcCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV  240 (328)
                      .-+.++|||||+|.||+.+|+.| +.+|.+|++||++.....   .       ...|     .....++++++ .+||+|
T Consensus        49 ~~~~~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~~---A-------~~~G-----v~~~~d~~e~~~~~aDvV  112 (667)
T PLN02712         49 NTTQLKIAIIGFGNYGQFLAKTL-ISQGHTVLAHSRSDHSLA---A-------RSLG-----VSFFLDPHDLCERHPDVI  112 (667)
T ss_pred             cCCCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH---H-------HHcC-----CEEeCCHHHHhhcCCCEE
Confidence            34456899999999999999997 688999999999743211   1       1112     12245788866 569999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~  287 (328)
                      ++|+|. ..+..++.+-.+..||+|++++|++.-...--+++.+.+.
T Consensus       113 iLavP~-~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~  158 (667)
T PLN02712        113 LLCTSI-ISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLP  158 (667)
T ss_pred             EEcCCH-HHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcC
Confidence            999994 5778888665556799999999997544222234444443

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.71  E-value=5.1e-07  Score=84.09  Aligned_cols=169  Identities=19%  Similarity=0.304  Sum_probs=106.2

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 020301           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (328)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~  102 (328)
                      +.-++.|.+.+....++ ..+++++.+.+.     ++.|+++++.+  ..+++. +++..+-.  |=|-    |+....+
T Consensus        55 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~--KDVD----Gl~~~N~  127 (284)
T PRK14179         55 RSALAAGFKSEVVRLPE-TISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPK--KDVD----GFHPMNT  127 (284)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cccc----ccCHhhH
Confidence            34456688887665543 346777776553     15589999864  344443 33333222  2110    1111111


Q ss_pred             hHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEec-CHHHHHHH
Q 020301          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA  181 (328)
Q Consensus       103 ~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~-G~IG~~vA  181 (328)
                            |-...+.++ ....++.-++.++-    +                     .+.++.||+++|||. |.+|+.+|
T Consensus       128 ------g~l~~~~~~-~~PcTp~avi~lL~----~---------------------~~i~l~Gk~v~vIG~S~ivG~Pla  175 (284)
T PRK14179        128 ------GHLWSGRPV-MIPCTPAGIMEMFR----E---------------------YNVELEGKHAVVIGRSNIVGKPMA  175 (284)
T ss_pred             ------HHHhCCCCC-CcCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCCcCcHHHH
Confidence                  111122333 34556665543332    1                     235799999999999 99999999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhc
Q 020301          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (328)
Q Consensus       182 ~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~  261 (328)
                      .+| ..-|+.|..|...                            ..++.+.+++||+|+.+++..    +++..+.   
T Consensus       176 ~lL-~~~gatVtv~~s~----------------------------t~~l~~~~~~ADIVI~avg~~----~~v~~~~---  219 (284)
T PRK14179        176 QLL-LDKNATVTLTHSR----------------------------TRNLAEVARKADILVVAIGRG----HFVTKEF---  219 (284)
T ss_pred             HHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEecCcc----ccCCHHH---
Confidence            998 4679999998321                            137889999999999999843    3465544   


Q ss_pred             CCCCcEEEEcCCC
Q 020301          262 MKKEAILVNCSRG  274 (328)
Q Consensus       262 mk~ga~lIN~aRG  274 (328)
                      +|+|+++||++--
T Consensus       220 ik~GavVIDvgin  232 (284)
T PRK14179        220 VKEGAVVIDVGMN  232 (284)
T ss_pred             ccCCcEEEEecce
Confidence            8999999999743

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.70  E-value=6.5e-07  Score=83.50  Aligned_cols=168  Identities=17%  Similarity=0.255  Sum_probs=106.8

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      .-++.|.+.+....+. ..+++++.+.+.     ++.|+++++.+  ..+++. +++..+-.  |=|-    |+....+ 
T Consensus        56 ~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~-  127 (286)
T PRK14175         56 AAEKIGMISEIVHLEE-TATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPE--KDVD----GFHPINI-  127 (286)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCCccch-
Confidence            3456688877665543 346777776553     15679999864  345543 44444322  2110    1111111 


Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~  182 (328)
                           |-...+.++ ....++.-++.++-    +                     .+.++.||++.|||.|. +|+.+|.
T Consensus       128 -----g~l~~~~~~-~~PcTp~ai~~ll~----~---------------------~~i~l~Gk~vvVIGrs~~VG~pla~  176 (286)
T PRK14175        128 -----GKLYIDEQT-FVPCTPLGIMEILK----H---------------------ADIDLEGKNAVVIGRSHIVGQPVSK  176 (286)
T ss_pred             -----HhHhcCCCC-CCCCcHHHHHHHHH----H---------------------cCCCCCCCEEEEECCCchhHHHHHH
Confidence                 111112232 33445554443332    0                     13479999999999999 9999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (328)
Q Consensus       183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m  262 (328)
                      +| ...|++|+.++++.                            .++.+.+++||+|+.+++.    .++|..+.   +
T Consensus       177 lL-~~~gatVtv~~s~t----------------------------~~l~~~~~~ADIVIsAvg~----p~~i~~~~---v  220 (286)
T PRK14175        177 LL-LQKNASVTILHSRS----------------------------KDMASYLKDADVIVSAVGK----PGLVTKDV---V  220 (286)
T ss_pred             HH-HHCCCeEEEEeCCc----------------------------hhHHHHHhhCCEEEECCCC----CcccCHHH---c
Confidence            97 68999999887532                            3678899999999999984    44688765   5


Q ss_pred             CCCcEEEEcCCC
Q 020301          263 KKEAILVNCSRG  274 (328)
Q Consensus       263 k~ga~lIN~aRG  274 (328)
                      |+|+++||++--
T Consensus       221 k~gavVIDvGi~  232 (286)
T PRK14175        221 KEGAVIIDVGNT  232 (286)
T ss_pred             CCCcEEEEcCCC
Confidence            899999999853

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.70  E-value=1.8e-07  Score=87.60  Aligned_cols=128  Identities=16%  Similarity=0.131  Sum_probs=83.9

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh---hhhhhhcCCCCCc--------cccccCCHHHHh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA---YGQFLKANGEQPV--------TWKRASSMDEVL  234 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~--------~~~~~~~l~ell  234 (328)
                      ++|+|||.|.||..+|..++ ..|.+|++||+++... +.....   ......+.+....        ......++++.+
T Consensus         2 ~~V~VIG~G~mG~~iA~~la-~~G~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   79 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFA-VSGFQTTLVDIKQEQL-ESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV   79 (288)
T ss_pred             cEEEEECccHHHHHHHHHHH-hCCCcEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence            57999999999999999974 6799999999986542 111100   0000000110000        112235788999


Q ss_pred             hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCccEEEEeCC
Q 020301          235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (328)
Q Consensus       235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~l-IN~aRG~~vde~aL~~aL~~g~i~gaalDV~  299 (328)
                      +.||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.-   +...+.+.++. .-...++..|
T Consensus        80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~---~~~~l~~~~~~-~~r~~g~h~~  141 (288)
T PRK09260         80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTM---SPTEIASFTKR-PERVIAMHFF  141 (288)
T ss_pred             cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCC---CHHHHHhhcCC-cccEEEEecC
Confidence            9999999999987776665555666778999877 788774   44566666643 2334566666

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.67  E-value=9e-08  Score=74.47  Aligned_cols=92  Identities=26%  Similarity=0.361  Sum_probs=62.1

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCC---cEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFK---MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg---~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      |+||||+|+||+.+++.+ ..-|   .+|+ +++|+++.. +++.+.|       +   ... ...+..+++++||+|++
T Consensus         1 kI~iIG~G~mg~al~~~l-~~~g~~~~~v~~~~~r~~~~~-~~~~~~~-------~---~~~-~~~~~~~~~~~advvil   67 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGL-LASGIKPHEVIIVSSRSPEKA-AELAKEY-------G---VQA-TADDNEEAAQEADVVIL   67 (96)
T ss_dssp             EEEEESTSHHHHHHHHHH-HHTTS-GGEEEEEEESSHHHH-HHHHHHC-------T---TEE-ESEEHHHHHHHTSEEEE
T ss_pred             CEEEECCCHHHHHHHHHH-HHCCCCceeEEeeccCcHHHH-HHHHHhh-------c---ccc-ccCChHHhhccCCEEEE
Confidence            699999999999999997 5778   8999 558887543 2222222       1   111 12378999999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      ++|  |+...-+-.+. ....++.++|+++=|
T Consensus        68 av~--p~~~~~v~~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   68 AVK--PQQLPEVLSEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             -S---GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred             EEC--HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence            999  44333333444 666789999988643

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=98.67  E-value=5.8e-08  Score=89.72  Aligned_cols=118  Identities=19%  Similarity=0.216  Sum_probs=92.5

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      ...+++|+||+|.||..++..|. ..|.+|++|||+.+...+ +        .++|     .....+..|+.+.||+|+.
T Consensus        33 ~s~~~iGFIGLG~MG~~M~~nLi-k~G~kVtV~dr~~~k~~~-f--------~~~G-----a~v~~sPaeVae~sDvvit   97 (327)
T KOG0409|consen   33 PSKTRIGFIGLGNMGSAMVSNLI-KAGYKVTVYDRTKDKCKE-F--------QEAG-----ARVANSPAEVAEDSDVVIT   97 (327)
T ss_pred             cccceeeEEeeccchHHHHHHHH-HcCCEEEEEeCcHHHHHH-H--------HHhc-----hhhhCCHHHHHhhcCEEEE
Confidence            35789999999999999999985 679999999999865422 1        1222     2345789999999999999


Q ss_pred             cCCCChhhhcccc--HHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCccEEEEe
Q 020301          243 HPVLDKTTYHLIN--KERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (328)
Q Consensus       243 ~~plt~~t~~li~--~~~~~~mk~ga~l-IN~aRG~~vde~aL~~aL~~g~i~gaalD  297 (328)
                      ++|...+.+.++.  ...|+..++|... |+.+.-+.--...|.++++...  +-.+|
T Consensus        98 mv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~--~~~vD  153 (327)
T KOG0409|consen   98 MVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKG--GRFVD  153 (327)
T ss_pred             EcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCC--CeEEe
Confidence            9999999888874  4478878888777 8998877777778888888753  34455

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.66  E-value=1.3e-07  Score=89.34  Aligned_cols=141  Identities=21%  Similarity=0.197  Sum_probs=85.5

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      .++|+|||+|.||+.+|+.+ +..|  .+|++||+++... +.        +...+..   .....++++.+++||+|++
T Consensus         6 ~~~I~IIG~G~mG~sla~~l-~~~g~~~~V~~~dr~~~~~-~~--------a~~~g~~---~~~~~~~~~~~~~aDvVii   72 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAI-RRLGLAGEIVGADRSAETR-AR--------ARELGLG---DRVTTSAAEAVKGADLVIL   72 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHH-HhcCCCcEEEEEECCHHHH-HH--------HHhCCCC---ceecCCHHHHhcCCCEEEE
Confidence            46899999999999999997 4556  4899999986532 11        1111211   1123467888999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCC---CCCC-C---CCCcccCCCe
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE---DEPY-M---KPGLSEMKNA  315 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~---~EP~-~---~~~L~~~~nv  315 (328)
                      |+|. ..+..++ ++....++++.++++++....--.+++.+.+..+ +  -.+....   .|-. +   ...|+.-.++
T Consensus        73 avp~-~~~~~v~-~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~-~--~~v~~hPm~g~e~~G~~~a~~~l~~g~~~  147 (307)
T PRK07502         73 CVPV-GASGAVA-AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEG-V--HFIPGHPLAGTEHSGPDAGFAELFENRWC  147 (307)
T ss_pred             CCCH-HHHHHHH-HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCC-C--eEEeCCCCCCCcccchhhcCHHHHCCCeE
Confidence            9994 3334433 4555678999999999664421122232222221 1  1233221   1110 1   1256666788


Q ss_pred             EEcCCCCC
Q 020301          316 IVVPHIAS  323 (328)
Q Consensus       316 ilTPHia~  323 (328)
                      ++||+-++
T Consensus       148 ~l~~~~~~  155 (307)
T PRK07502        148 ILTPPEGT  155 (307)
T ss_pred             EEeCCCCC
Confidence            99997654

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.65  E-value=1.7e-07  Score=87.46  Aligned_cols=135  Identities=14%  Similarity=0.205  Sum_probs=82.4

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl  246 (328)
                      +|||||+|.||+.+|+.| +..|.+|++||+++... +.        +...+...   ....+. +.+++||+|++|+|.
T Consensus         2 ~I~IIG~G~mG~sla~~L-~~~g~~V~~~d~~~~~~-~~--------a~~~g~~~---~~~~~~-~~~~~aDlVilavp~   67 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDL-RSLGHTVYGVSRRESTC-ER--------AIERGLVD---EASTDL-SLLKDCDLVILALPI   67 (279)
T ss_pred             eEEEEeecHHHHHHHHHH-HHCCCEEEEEECCHHHH-HH--------HHHCCCcc---cccCCH-hHhcCCCEEEEcCCH
Confidence            699999999999999997 56799999999986432 11        11112111   111233 468999999999993


Q ss_pred             ChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCC---CCCCC-CC---CCcccCCCeEEcC
Q 020301          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF---EDEPY-MK---PGLSEMKNAIVVP  319 (328)
Q Consensus       247 t~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~---~~EP~-~~---~~L~~~~nvilTP  319 (328)
                       ..+..++ ++....+++++++++++.-.   .. ..+++.+..-.  .+...   ..|.. ..   ..|+.-.++++||
T Consensus        68 -~~~~~~~-~~l~~~l~~~~ii~d~~Svk---~~-~~~~~~~~~~~--~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p  139 (279)
T PRK07417         68 -GLLLPPS-EQLIPALPPEAIVTDVGSVK---AP-IVEAWEKLHPR--FVGSHPMAGTAESGVEAGQRGLFKNRPWVLTP  139 (279)
T ss_pred             -HHHHHHH-HHHHHhCCCCcEEEeCcchH---HH-HHHHHHHhhCC--ceeeCCcCCCCcchHHHhhHHHhCCCcEEEcc
Confidence             3334433 56667789999999997744   22 33333322111  12211   11110 00   1267778899999


Q ss_pred             CCCC
Q 020301          320 HIAS  323 (328)
Q Consensus       320 Hia~  323 (328)
                      +-.+
T Consensus       140 ~~~~  143 (279)
T PRK07417        140 TENT  143 (279)
T ss_pred             CCCC
Confidence            7543

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=98.62  E-value=1.7e-07  Score=87.44  Aligned_cols=136  Identities=23%  Similarity=0.235  Sum_probs=87.0

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEE--EEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC-HHHHhhcCCEEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVIS  241 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~aDiV~  241 (328)
                      -++|+|+|+|.||+.+|+.+ +.-|..+  +++|++.......            ...........+ ..+.+.+||+|+
T Consensus         3 ~~~v~IvG~GliG~s~a~~l-~~~g~~v~i~g~d~~~~~~~~a------------~~lgv~d~~~~~~~~~~~~~aD~Vi   69 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARAL-KEAGLVVRIIGRDRSAATLKAA------------LELGVIDELTVAGLAEAAAEADLVI   69 (279)
T ss_pred             CcEEEEECCchHHHHHHHHH-HHcCCeEEEEeecCcHHHHHHH------------hhcCcccccccchhhhhcccCCEEE
Confidence            36899999999999999997 5666655  6666654332111            001111111123 367788899999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC----CCCcccCCCeEE
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----KPGLSEMKNAIV  317 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~----~~~L~~~~nvil  317 (328)
                      +++| -..|..++ ++....+|+|+++++++.-.----++..+.+.++.      .+..--|..    ..++++-..+++
T Consensus        70 vavP-i~~~~~~l-~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~------~~vg~HPM~G~~~~~~lf~~~~~vl  141 (279)
T COG0287          70 VAVP-IEATEEVL-KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV------RFVGGHPMFGPEADAGLFENAVVVL  141 (279)
T ss_pred             Eecc-HHHHHHHH-HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC------eeEecCCCCCCcccccccCCCEEEE
Confidence            9999 35566655 45555899999999998766444444444443221      233335642    237888889999


Q ss_pred             cCCC
Q 020301          318 VPHI  321 (328)
Q Consensus       318 TPHi  321 (328)
                      ||.-
T Consensus       142 tp~~  145 (279)
T COG0287         142 TPSE  145 (279)
T ss_pred             cCCC
Confidence            9974

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.62  E-value=1.4e-07  Score=91.28  Aligned_cols=138  Identities=18%  Similarity=0.116  Sum_probs=85.5

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      ++|+|||+|.||+++|+.+ +..|.+|.+|++++.......  .     ...+..   .....++++++++||+|++|+|
T Consensus         1 ~~I~iIG~GliG~siA~~L-~~~G~~v~i~~~~~~~~~~~~--a-----~~~~~~---~~~~~~~~~~~~~aDlVilavP   69 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAI-KAAGPDVFIIGYDPSAAQLAR--A-----LGFGVI---DELAADLQRAAAEADLIVLAVP   69 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHH-HhcCCCeEEEEeCCCHHHHHH--H-----hcCCCC---cccccCHHHHhcCCCEEEEeCC
Confidence            4799999999999999997 677888777777654321110  0     001111   1123578889999999999999


Q ss_pred             CChhhhccccHHHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCC----------CCcccCCC
Q 020301          246 LDKTTYHLINKERLA-TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----------PGLSEMKN  314 (328)
Q Consensus       246 lt~~t~~li~~~~~~-~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~----------~~L~~~~n  314 (328)
                      . ..+..++. +... .+++++++++++.-..-..+++.+.+..+ .  -.++..   |.+.          ..|+.-..
T Consensus        70 ~-~~~~~vl~-~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~-~--~~ig~H---PMaG~e~sG~~aa~~~lf~g~~  141 (359)
T PRK06545         70 V-DATAALLA-ELADLELKPGVIVTDVGSVKGAILAEAEALLGDL-I--RFVGGH---PMAGSHKSGVAAARADLFENAP  141 (359)
T ss_pred             H-HHHHHHHH-HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCC-C--eEEeeC---CcCcCchhhHHHhcHHHHCCCc
Confidence            5 45666663 3333 47899999999876543333333332211 1  123322   3221          24666677


Q ss_pred             eEEcCCCC
Q 020301          315 AIVVPHIA  322 (328)
Q Consensus       315 vilTPHia  322 (328)
                      .++||+-.
T Consensus       142 ~il~~~~~  149 (359)
T PRK06545        142 WVLTPDDH  149 (359)
T ss_pred             EEEecCCC
Confidence            88998754

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.60  E-value=2.6e-07  Score=86.02  Aligned_cols=112  Identities=17%  Similarity=0.183  Sum_probs=78.7

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhc-CCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      ...++||||+|+||+.+++.+.+. .++++. +||+++... +++.+.|       +.    ...+.+++++++++|+|+
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a-~~~a~~~-------g~----~~~~~~~eell~~~D~Vv   72 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRH-ADFIWGL-------RR----PPPVVPLDQLATHADIVV   72 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHH-HHHHHhc-------CC----CcccCCHHHHhcCCCEEE
Confidence            347899999999999999997543 588876 678876432 2222211       10    113468999999999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      +|+|..  +..-+..   ..++.|..++..++|.+.+.++|.++.+++...
T Consensus        73 i~tp~~--~h~e~~~---~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         73 EAAPAS--VLRAIVE---PVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             ECCCcH--HHHHHHH---HHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence            999943  3322233   334667777888899888899999998886543

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.59  E-value=6.2e-07  Score=87.21  Aligned_cols=81  Identities=17%  Similarity=0.314  Sum_probs=64.7

Q ss_pred             CCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      ..++|+||| +|.||+.+|+.| +..|..|.+||+...                           .+.++++++||+|++
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l-~~~G~~V~~~d~~~~---------------------------~~~~~~~~~aDlVil  148 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKML-TLSGYQVRILEQDDW---------------------------DRAEDILADAGMVIV  148 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHH-HHCCCeEEEeCCCcc---------------------------hhHHHHHhcCCEEEE
Confidence            558999999 999999999997 577999999997421                           256778899999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      |+|.. .+..++ ++ +..+++|+++++++.-.
T Consensus       149 avP~~-~~~~~~-~~-l~~l~~~~iv~Dv~SvK  178 (374)
T PRK11199        149 SVPIH-LTEEVI-AR-LPPLPEDCILVDLTSVK  178 (374)
T ss_pred             eCcHH-HHHHHH-HH-HhCCCCCcEEEECCCcc
Confidence            99954 455555 33 44489999999997754

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.58  E-value=5e-07  Score=84.28  Aligned_cols=107  Identities=18%  Similarity=0.267  Sum_probs=75.2

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      +.+|||||+|+||+.+|+.|. .-|    .+|++|||+..+..+.+...|       +     .....+..+++++||+|
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~-~~g~~~~~~v~v~~r~~~~~~~~l~~~~-------g-----~~~~~~~~e~~~~aDvV   69 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLL-HANVVKGEQITVSNRSNETRLQELHQKY-------G-----VKGTHNKKELLTDANIL   69 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCCHHHHHHHHHhc-------C-----ceEeCCHHHHHhcCCEE
Confidence            468999999999999999975 444    689999987644333322211       1     11235778889999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      ++++| ..+....+ ......++++.++|++.-|  +..+.|.+.+..
T Consensus        70 ilav~-p~~~~~vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~~  113 (279)
T PRK07679         70 FLAMK-PKDVAEAL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQK  113 (279)
T ss_pred             EEEeC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence            99999 34455545 4444557889999998655  467777776643

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.56  E-value=4.5e-07  Score=89.58  Aligned_cols=140  Identities=14%  Similarity=0.114  Sum_probs=91.3

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCC-----------ccccccCCHHHHh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-----------VTWKRASSMDEVL  234 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~ell  234 (328)
                      .+|||||+|.||..+|..++ . |.+|++||+++.. .+...         .|..+           .+....++..+.+
T Consensus         7 mkI~vIGlGyvGlpmA~~la-~-~~~V~g~D~~~~~-ve~l~---------~G~~~~~e~~~~~l~~~g~l~~t~~~~~~   74 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFG-K-SRQVVGFDVNKKR-ILELK---------NGVDVNLETTEEELREARYLKFTSEIEKI   74 (425)
T ss_pred             CeEEEECcCcchHHHHHHHh-c-CCEEEEEeCCHHH-HHHHH---------CcCCCCCCCCHHHHHhhCCeeEEeCHHHH
Confidence            57999999999999999975 3 6999999998754 22211         12111           0011123334568


Q ss_pred             hcCCEEEEcCCCC------hhhhccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH-Hc--CCccEE-EEeCCCCC
Q 020301          235 READVISLHPVLD------KTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHL-KQ--NPMFRV-GLDVFEDE  302 (328)
Q Consensus       235 ~~aDiV~l~~plt------~~t~~li--~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL-~~--g~i~ga-alDV~~~E  302 (328)
                      ++||++++|+|..      ++...++  .+...+.+++|.++|+.|.-.+--.+.+++.+ ++  |...+- -.=+|.+|
T Consensus        75 ~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE  154 (425)
T PRK15182         75 KECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPE  154 (425)
T ss_pred             cCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCC
Confidence            9999999999954      2334554  34567889999999999998887777654444 33  321111 11146778


Q ss_pred             CCCC----CCcccCCCeEE
Q 020301          303 PYMK----PGLSEMKNAIV  317 (328)
Q Consensus       303 P~~~----~~L~~~~nvil  317 (328)
                      |...    ..+.+.|.++.
T Consensus       155 ~v~~G~a~~~~~~~~riv~  173 (425)
T PRK15182        155 RINPGDKKHRLTNIKKITS  173 (425)
T ss_pred             cCCCCcccccccCCCeEEE
Confidence            8743    25677777765

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.54  E-value=1.8e-06  Score=80.94  Aligned_cols=147  Identities=15%  Similarity=0.129  Sum_probs=90.2

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHhhhhhhhhcCCCCC---------ccccccCCHHHHh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP---------VTWKRASSMDEVL  234 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~l~ell  234 (328)
                      ++|+|||.|.||..+|..++ .-|.+|+.||+++.....  +............+...         .......++++.+
T Consensus         4 ~kIaViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~   82 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTA-FHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV   82 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence            57999999999999999974 669999999998653211  11100000001111100         1112346888999


Q ss_pred             hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCC
Q 020301          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN  314 (328)
Q Consensus       235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~n  314 (328)
                      +.||+|+.++|...+.+.-+-++.-+.++++++|+..+.+  +....+.+.++... .-.++-.       .+|.+.++.
T Consensus        83 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~~-r~vg~Hf-------~~p~~~~~l  152 (287)
T PRK08293         83 KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRPE-KFLALHF-------ANEIWKNNT  152 (287)
T ss_pred             cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCcc-cEEEEcC-------CCCCCcCCe
Confidence            9999999999976666655556666778899988543332  35566777665322 2233322       234556677


Q ss_pred             eEEcCCCCC
Q 020301          315 AIVVPHIAS  323 (328)
Q Consensus       315 vilTPHia~  323 (328)
                      |.+.|+-..
T Consensus       153 vevv~~~~t  161 (287)
T PRK08293        153 AEIMGHPGT  161 (287)
T ss_pred             EEEeCCCCC
Confidence            788776543

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.52  E-value=4.7e-07  Score=78.29  Aligned_cols=82  Identities=20%  Similarity=0.272  Sum_probs=68.4

Q ss_pred             cccCCCEEEEEecCHH-HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~I-G~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      .++.|+++.|||.|.+ |+.+|+.| ...|++|++.+++.                            .++.+.+.+||+
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L-~~~g~~V~v~~r~~----------------------------~~l~~~l~~aDi   90 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALL-LNRNATVTVCHSKT----------------------------KNLKEHTKQADI   90 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHH-hhCCCEEEEEECCc----------------------------hhHHHHHhhCCE
Confidence            3689999999999986 88899997 68899999988753                            356788999999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vd  278 (328)
                      |+.+.+..    ++|..+.   ++++.++||+|...-+|
T Consensus        91 VIsat~~~----~ii~~~~---~~~~~viIDla~prdvd  122 (168)
T cd01080          91 VIVAVGKP----GLVKGDM---VKPGAVVIDVGINRVPD  122 (168)
T ss_pred             EEEcCCCC----ceecHHH---ccCCeEEEEccCCCccc
Confidence            99998842    3788875   57899999999887776

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.52  E-value=5.7e-06  Score=77.10  Aligned_cols=76  Identities=16%  Similarity=0.166  Sum_probs=63.7

Q ss_pred             cccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      .++.||++.|||.|. +|+.+|.+| ...|+.|+.++...                            .++++.+++||+
T Consensus       155 i~l~Gk~vvViGrs~iVG~Pla~lL-~~~~atVtv~hs~T----------------------------~~l~~~~~~ADI  205 (285)
T PRK10792        155 IDTYGLNAVVVGASNIVGRPMSLEL-LLAGCTVTVCHRFT----------------------------KNLRHHVRNADL  205 (285)
T ss_pred             CCCCCCEEEEECCCcccHHHHHHHH-HHCCCeEEEEECCC----------------------------CCHHHHHhhCCE
Confidence            579999999999999 999999997 57899999886431                            378899999999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      |+.+++-    .+++..   +.+|+|+++||++
T Consensus       206 vi~avG~----p~~v~~---~~vk~gavVIDvG  231 (285)
T PRK10792        206 LVVAVGK----PGFIPG---EWIKPGAIVIDVG  231 (285)
T ss_pred             EEEcCCC----cccccH---HHcCCCcEEEEcc
Confidence            9999952    235666   4468999999998

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.51  E-value=1e-05  Score=75.44  Aligned_cols=167  Identities=17%  Similarity=0.227  Sum_probs=105.1

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      ..++.|.+.+....++ ..+++++.+.+..     +.|+++++.+  ..+++. +++.++-.  |       -+|.+-- 
T Consensus        62 ~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--K-------DVDGl~~-  130 (287)
T PRK14176         62 ACERVGIRAEDQFLPA-DTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPA--K-------DADGFHP-  130 (287)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--c-------cccccCh-
Confidence            3456688877665543 3467777765532     5689999864  344443 44443322  2       1111110 


Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~  182 (328)
                        ...|-...+.+. ....++.-++.++=                         ..+.++.||++.|||.|. +|+.+|.
T Consensus       131 --~N~g~l~~g~~~-~~PcTp~av~~ll~-------------------------~~~i~l~Gk~vvViGrs~iVGkPla~  182 (287)
T PRK14176        131 --YNMGKLMIGDEG-LVPCTPHGVIRALE-------------------------EYGVDIEGKNAVIVGHSNVVGKPMAA  182 (287)
T ss_pred             --hhhhhHhcCCCC-CCCCcHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCcccHHHHHH
Confidence              011111122232 34455655443331                         123579999999999999 9999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (328)
Q Consensus       183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m  262 (328)
                      +| ...|+.|..++...                            .++.+..++||+|+.++.-    .+++..+   .+
T Consensus       183 lL-~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIvv~AvG~----p~~i~~~---~v  226 (287)
T PRK14176        183 ML-LNRNATVSVCHVFT----------------------------DDLKKYTLDADILVVATGV----KHLIKAD---MV  226 (287)
T ss_pred             HH-HHCCCEEEEEeccC----------------------------CCHHHHHhhCCEEEEccCC----ccccCHH---Hc
Confidence            97 57899999887421                            3788999999999987663    2467666   56


Q ss_pred             CCCcEEEEcCC
Q 020301          263 KKEAILVNCSR  273 (328)
Q Consensus       263 k~ga~lIN~aR  273 (328)
                      |+|+++||++-
T Consensus       227 k~gavVIDvGi  237 (287)
T PRK14176        227 KEGAVIFDVGI  237 (287)
T ss_pred             CCCcEEEEecc
Confidence            89999999974

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.50  E-value=3.7e-06  Score=78.13  Aligned_cols=167  Identities=16%  Similarity=0.207  Sum_probs=107.8

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      .-++.|.+.+....++ ..+++|+.+.+.     +..|+++++.+  ..++.. +++..+-.  |=|-    |+....+ 
T Consensus        50 ~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~--KDVD----Gl~~~n~-  121 (279)
T PRK14178         50 ACERVGIGSVGIELPG-DATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPE--KDVD----GFHPLNL-  121 (279)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cCcc----cCChhhH-
Confidence            3456688877665543 356777776653     15689999864  345443 44443322  2111    2211111 


Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecC-HHHHHHHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR  182 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G-~IG~~vA~  182 (328)
                           |-...+.++ ....++.-++.++=    +                     .+.++.|+++.|+|.+ ..|+.+|.
T Consensus       122 -----g~l~~~~~~-~~PcTp~av~~ll~----~---------------------~~i~l~Gk~V~ViGrs~~vGrpla~  170 (279)
T PRK14178        122 -----GRLVSGLPG-FAPCTPNGIMTLLH----E---------------------YKISIAGKRAVVVGRSIDVGRPMAA  170 (279)
T ss_pred             -----HHHhCCCCC-CCCCCHHHHHHHHH----H---------------------cCCCCCCCEEEEECCCccccHHHHH
Confidence                 111122333 34455555443321    1                     1357999999999999 99999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (328)
Q Consensus       183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m  262 (328)
                      +| ..+|++|..++.+.                            .++.+.+++||+|+.+++..    +++.++.+   
T Consensus       171 lL-~~~~atVtv~hs~t----------------------------~~L~~~~~~ADIvI~Avgk~----~lv~~~~v---  214 (279)
T PRK14178        171 LL-LNADATVTICHSKT----------------------------ENLKAELRQADILVSAAGKA----GFITPDMV---  214 (279)
T ss_pred             HH-HhCCCeeEEEecCh----------------------------hHHHHHHhhCCEEEECCCcc----cccCHHHc---
Confidence            97 68999999876432                            36888999999999999732    77888885   


Q ss_pred             CCCcEEEEcCC
Q 020301          263 KKEAILVNCSR  273 (328)
Q Consensus       263 k~ga~lIN~aR  273 (328)
                      |||+++||++-
T Consensus       215 k~GavVIDVgi  225 (279)
T PRK14178        215 KPGATVIDVGI  225 (279)
T ss_pred             CCCcEEEEeec
Confidence            99999999984

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.49  E-value=6.9e-07  Score=82.53  Aligned_cols=103  Identities=31%  Similarity=0.398  Sum_probs=73.7

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCc----EEEEE-cCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      +|||||+|+||+.+|+.|. .-|.    +|++| ||++... +..        ...|     .....+..+++++||+|+
T Consensus         2 kI~~IG~G~mG~a~a~~L~-~~g~~~~~~i~v~~~r~~~~~-~~~--------~~~g-----~~~~~~~~e~~~~aDvVi   66 (266)
T PLN02688          2 RVGFIGAGKMAEAIARGLV-ASGVVPPSRISTADDSNPARR-DVF--------QSLG-----VKTAASNTEVVKSSDVII   66 (266)
T ss_pred             eEEEECCcHHHHHHHHHHH-HCCCCCcceEEEEeCCCHHHH-HHH--------HHcC-----CEEeCChHHHHhcCCEEE
Confidence            6999999999999999975 4566    88999 8875432 211        1112     223357788899999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      +|+| ....+.++ .+....++++.++|++.-|  +..+.+.+.+..
T Consensus        67 l~v~-~~~~~~vl-~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~  109 (266)
T PLN02688         67 LAVK-PQVVKDVL-TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG  109 (266)
T ss_pred             EEEC-cHHHHHHH-HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence            9997 55666666 3455667889999988655  477777766643

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.47  E-value=2e-06  Score=72.54  Aligned_cols=114  Identities=18%  Similarity=0.235  Sum_probs=77.0

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ++.+++++|+|.|.||+.+++.++ ..| .+|.++|++.... ++..+.++       .... .....+++++++++|+|
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~-~~g~~~v~v~~r~~~~~-~~~~~~~~-------~~~~-~~~~~~~~~~~~~~Dvv   85 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALA-ELGAAKIVIVNRTLEKA-KALAERFG-------ELGI-AIAYLDLEELLAEADLI   85 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHH-HCCCCEEEEEcCCHHHH-HHHHHHHh-------hccc-ceeecchhhccccCCEE
Confidence            466889999999999999999974 564 7899999986542 22222211       0000 01235777889999999


Q ss_pred             EEcCCCChh-hh-ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301          241 SLHPVLDKT-TY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (328)
Q Consensus       241 ~l~~plt~~-t~-~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~  290 (328)
                      ++++|.... .. ..+...   .++++.+++|++-.+.. + .|.+.+++..
T Consensus        86 i~~~~~~~~~~~~~~~~~~---~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g  132 (155)
T cd01065          86 INTTPVGMKPGDELPLPPS---LLKPGGVVYDVVYNPLE-T-PLLKEARALG  132 (155)
T ss_pred             EeCcCCCCCCCCCCCCCHH---HcCCCCEEEEcCcCCCC-C-HHHHHHHHCC
Confidence            999996653 12 223332   36899999999876533 3 7777777653

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.46  E-value=2.1e-06  Score=80.60  Aligned_cols=128  Identities=22%  Similarity=0.260  Sum_probs=80.9

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhh---hhhhcCCCCC--------ccccccCCHHHHh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG---QFLKANGEQP--------VTWKRASSMDEVL  234 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~--------~~~~~~~~l~ell  234 (328)
                      ++|+|||.|.||..+|..++ ..|.+|++||++++... ...+...   ......+..+        .......+++ .+
T Consensus         5 ~kI~vIGaG~mG~~iA~~la-~~G~~V~l~d~~~~~~~-~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~   81 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCA-LAGYDVLLNDVSADRLE-AGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DL   81 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHHHHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-Hh
Confidence            57999999999999999974 67999999999865321 1111000   0000112111        0011234665 47


Q ss_pred             hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCccEEEEeCCC
Q 020301          235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (328)
Q Consensus       235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gaalDV~~  300 (328)
                      ++||+|+.++|...+.+..+-++..+.++++++|+ |+|.-.   ...|.+.+.. .-...++-.+.
T Consensus        82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~-~~r~~g~h~~~  144 (292)
T PRK07530         82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDR-PERFIGIHFMN  144 (292)
T ss_pred             cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCC-cccEEEeeccC
Confidence            89999999999877766555566777889999998 665543   3467777643 22334555555

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.46  E-value=1.2e-06  Score=81.70  Aligned_cols=105  Identities=22%  Similarity=0.322  Sum_probs=75.4

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      +++||||+|+||+++|+.|. .-|    .+|++|||+... .+...+.|       +     .....+..+++++||+|+
T Consensus         3 ~~IgfIG~G~MG~aia~~L~-~~g~~~~~~I~v~~r~~~~-~~~l~~~~-------g-----~~~~~~~~e~~~~aDiIi   68 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMI-NKNIVSPDQIICSDLNVSN-LKNASDKY-------G-----ITITTNNNEVANSADILI   68 (272)
T ss_pred             CeEEEECccHHHHHHHHHHH-HCCCCCCceEEEECCCHHH-HHHHHHhc-------C-----cEEeCCcHHHHhhCCEEE
Confidence            47999999999999999874 334    379999998644 22211111       2     112357788999999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      +|+| ......++ ++.-..++++.++|.+.=|  ++.+.|.+.|..
T Consensus        69 Lavk-P~~~~~vl-~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~~  111 (272)
T PRK12491         69 LSIK-PDLYSSVI-NQIKDQIKNDVIVVTIAAG--KSIKSTENEFDR  111 (272)
T ss_pred             EEeC-hHHHHHHH-HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcCC
Confidence            9999 35566655 3444556889999999777  677888887753

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.44  E-value=6.9e-06  Score=76.55  Aligned_cols=168  Identities=18%  Similarity=0.227  Sum_probs=106.4

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      ..++.|.+++....++ ..+++++.+.+..     ..|+++++.+  ..+++. +++.++-.  |       -+|.+.-.
T Consensus        55 ~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--K-------DVDGl~~~  124 (285)
T PRK14191         55 ACERVGMDSDLHTLQE-NTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPN--K-------DVDGFHPL  124 (285)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--c-------cccccChh
Confidence            3456688877665543 3466777765532     4679999864  344443 33333222  2       11211110


Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecC-HHHHHHHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR  182 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G-~IG~~vA~  182 (328)
                         ..|-...+.++ ....++.-++.++=    +                     .+.++.||++.|||-| .+|+.+|.
T Consensus       125 ---n~g~l~~g~~~-~~PcTp~avi~lL~----~---------------------~~i~l~Gk~vvVvGrs~~VG~Pla~  175 (285)
T PRK14191        125 ---NIGKLCSQLDG-FVPATPMGVMRLLK----H---------------------YHIEIKGKDVVIIGASNIVGKPLAM  175 (285)
T ss_pred             ---hHHHHhcCCCC-CCCCcHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCchhHHHHHH
Confidence               01111222232 34556665553331    1                     2357999999999999 99999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (328)
Q Consensus       183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m  262 (328)
                      +| ..-|+.|..++...                            .++.+.+++||+|+.+++.    .+++..+.+   
T Consensus       176 lL-~~~gAtVtv~hs~t----------------------------~~l~~~~~~ADIvV~AvG~----p~~i~~~~v---  219 (285)
T PRK14191        176 LM-LNAGASVSVCHILT----------------------------KDLSFYTQNADIVCVGVGK----PDLIKASMV---  219 (285)
T ss_pred             HH-HHCCCEEEEEeCCc----------------------------HHHHHHHHhCCEEEEecCC----CCcCCHHHc---
Confidence            97 57799999875321                            2577899999999999862    557887766   


Q ss_pred             CCCcEEEEcCCC
Q 020301          263 KKEAILVNCSRG  274 (328)
Q Consensus       263 k~ga~lIN~aRG  274 (328)
                      |+|+++||++--
T Consensus       220 k~GavVIDvGi~  231 (285)
T PRK14191        220 KKGAVVVDIGIN  231 (285)
T ss_pred             CCCcEEEEeecc
Confidence            899999999853

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.42  E-value=1e-06  Score=73.42  Aligned_cols=104  Identities=22%  Similarity=0.286  Sum_probs=73.3

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ++.|+++.|||.|.+|+.++..| ...|++ |+.++|+.+. .++..+.+       +..........++.+.+.++|+|
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L-~~~g~~~i~i~nRt~~r-a~~l~~~~-------~~~~~~~~~~~~~~~~~~~~Div   79 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAAL-AALGAKEITIVNRTPER-AEALAEEF-------GGVNIEAIPLEDLEEALQEADIV   79 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHH-HHTTSSEEEEEESSHHH-HHHHHHHH-------TGCSEEEEEGGGHCHHHHTESEE
T ss_pred             CcCCCEEEEECCHHHHHHHHHHH-HHcCCCEEEEEECCHHH-HHHHHHHc-------CccccceeeHHHHHHHHhhCCeE
Confidence            78999999999999999999997 578986 9999998753 23332222       11112233456777889999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCc-EEEEcCCCccc
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEA-ILVNCSRGPVI  277 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga-~lIN~aRG~~v  277 (328)
                      +.+.|....   .+.++.++..++.. ++++.|...-|
T Consensus        80 I~aT~~~~~---~i~~~~~~~~~~~~~~v~Dla~Pr~i  114 (135)
T PF01488_consen   80 INATPSGMP---IITEEMLKKASKKLRLVIDLAVPRDI  114 (135)
T ss_dssp             EE-SSTTST---SSTHHHHTTTCHHCSEEEES-SS-SB
T ss_pred             EEecCCCCc---ccCHHHHHHHHhhhhceeccccCCCC
Confidence            999885433   78888888776544 88888654333

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.40  E-value=2.6e-06  Score=79.95  Aligned_cols=131  Identities=18%  Similarity=0.243  Sum_probs=85.4

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHhhhhhhhhcCCCCCc--------cccccCCHHHHhh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQPV--------TWKRASSMDEVLR  235 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~~~l~ell~  235 (328)
                      ++|||||.|.||..+|..++ ..|.+|+.||++++....  +.....-+.+.+.|....        ......++ +.++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~   83 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCA-RAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFA   83 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhC
Confidence            48999999999999999975 679999999999865321  111111111122222110        11134577 4579


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcC-CCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCC
Q 020301          236 EADVISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~~~~~~~m-k~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~  301 (328)
                      .||+|+-++|.+.+.+..+-.+.=+.+ +++++|++.+.+  +...++..+++. .=.-.++..|.+
T Consensus        84 ~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~--~~~~~la~~~~~-~~r~~g~hf~~P  147 (286)
T PRK07819         84 DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSS--IPIMKLAAATKR-PGRVLGLHFFNP  147 (286)
T ss_pred             CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-CccEEEEecCCC
Confidence            999999999999998887765444444 899999888665  445555555543 223456666664

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.39  E-value=2.1e-06  Score=84.69  Aligned_cols=109  Identities=23%  Similarity=0.254  Sum_probs=75.2

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH------------
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV------------  233 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el------------  233 (328)
                      ++|+|||+|.||..+|..|+ ..|.+|++||+++... +..         ..|..+.   ....++++            
T Consensus         4 ~kI~VIGlG~~G~~~A~~La-~~G~~V~~~D~~~~~v-~~l---------~~g~~~~---~e~~l~~~l~~~~~~g~l~~   69 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFA-SRQKQVIGVDINQHAV-DTI---------NRGEIHI---VEPDLDMVVKTAVEGGYLRA   69 (415)
T ss_pred             cEEEEECcchhhHHHHHHHH-hCCCEEEEEeCCHHHH-HHH---------HCCCCCc---CCCCHHHHHHHHhhcCceee
Confidence            68999999999999999984 6799999999986542 211         1111111   11233333            


Q ss_pred             ---hhcCCEEEEcCCCC------hhhhccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          234 ---LREADVISLHPVLD------KTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       234 ---l~~aDiV~l~~plt------~~t~~li--~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                         ++.||+|++|+|..      ++...+.  -+.....+++|+++|+.|.-..=-.+.+...|.+
T Consensus        70 ~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~  135 (415)
T PRK11064         70 TTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE  135 (415)
T ss_pred             ecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence               34799999999953      1222322  2556777899999999999777777777776665

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.39  E-value=3.6e-06  Score=80.29  Aligned_cols=114  Identities=19%  Similarity=0.207  Sum_probs=75.9

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhh-hhcCCC-CCccccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF-LKANGE-QPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .+|+|||.|.||..+|.+|+ ..|.+|.+|+|++... +..... ... ....+. .+.......+++++++.||+|+++
T Consensus         5 m~I~iIG~G~mG~~ia~~L~-~~G~~V~~~~r~~~~~-~~i~~~-~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~   81 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAA-SKGVPVRLWARRPEFA-AALAAE-RENREYLPGVALPAELYPTADPEEALAGADFAVVA   81 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHHh-CcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEE
Confidence            47999999999999999984 6799999999975431 111110 000 000011 000122345888889999999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCCC-cccC--HHHHHHHHHc
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG-PVID--EVALVEHLKQ  288 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG-~~vd--e~aL~~aL~~  288 (328)
                      +|.. .+     ++.++.++++.++|+++.| ..-+  ...+.+.+.+
T Consensus        82 v~~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         82 VPSK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             CchH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            9954 22     6666889999999999998 3332  4566666654

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.39  E-value=3e-05  Score=78.02  Aligned_cols=227  Identities=18%  Similarity=0.210  Sum_probs=120.9

Q ss_pred             HHHHHhCCCeEEEecC--CCCCCCHHHHHHH---hc-----CCccEEEecCCCCccHHHHHHhhccCCceEEEccccCCc
Q 020301           30 INLLIEQDCRVEICTQ--KKTILSVEDIIAL---IG-----DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNN   99 (328)
Q Consensus        30 ~~~l~~~~~~~~~~~~--~~~~~~~e~~~~~---~~-----~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d~   99 (328)
                      .+.|.+.|+++.+...  ....+++++..+.   +.     +++|.|+- ...+ +.+.++.++. |..++....-..|.
T Consensus        23 v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~~~diilk-V~~P-~~~e~~~l~~-g~~li~~l~p~~~~   99 (509)
T PRK09424         23 VEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVWQSDIILK-VNAP-SDDEIALLRE-GATLVSFIWPAQNP   99 (509)
T ss_pred             HHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccccCCEEEE-eCCC-CHHHHHhcCC-CCEEEEEeCcccCH
Confidence            5667778888866543  1234566666541   10     24666662 1222 3455666765 32445444444444


Q ss_pred             cChhHHHhCCceEec---CCCC---C----CchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcc-cccccCCCEE
Q 020301          100 VDVNAANKYGIAVGN---TPGV---L----TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLF-VGNLLKGQTV  168 (328)
Q Consensus       100 id~~~~~~~gI~v~n---~p~~---~----~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~-~~~~l~g~tv  168 (328)
                      =-++...++||.+..   .|..   .    =.++|+.+=      .|-+....+  .-+.+   .+... ......|.+|
T Consensus       100 ~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG------y~Av~~aa~--~~~~~---~~g~~taaG~~pg~kV  168 (509)
T PRK09424        100 ELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG------YRAVIEAAH--EFGRF---FTGQITAAGKVPPAKV  168 (509)
T ss_pred             HHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH------HHHHHHHHH--Hhccc---CCCceeccCCcCCCEE
Confidence            345777888987765   2210   0    012233221      111111111  11111   01000 0113569999


Q ss_pred             EEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh---c--CCCCCccccc-c-CC--------HHHH
Q 020301          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---A--NGEQPVTWKR-A-SS--------MDEV  233 (328)
Q Consensus       169 gIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~-~-~~--------l~el  233 (328)
                      .|+|.|.+|...++.+ +.+|++|+++|+++...  +..+.++....   .  .+....++.. . .+        +.+.
T Consensus       169 lViGaG~iGL~Ai~~A-k~lGA~V~a~D~~~~rl--e~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~  245 (509)
T PRK09424        169 LVIGAGVAGLAAIGAA-GSLGAIVRAFDTRPEVA--EQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQ  245 (509)
T ss_pred             EEECCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH--HHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhc
Confidence            9999999999999985 89999999999987542  12222332100   0  0000000000 0 01        1222


Q ss_pred             hhcCCEEEEcCCCChh-hhccccHHHHhcCCCCcEEEEcCC
Q 020301          234 LREADVISLHPVLDKT-TYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       234 l~~aDiV~l~~plt~~-t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      ++.+|+|+.+..-... ...++.++.++.||+|+++|+++=
T Consensus       246 ~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        246 AKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             cCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            3579999988753221 345667999999999999999974

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.38  E-value=7e-06  Score=76.63  Aligned_cols=119  Identities=22%  Similarity=0.259  Sum_probs=77.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHH--HHhhhhhhhhcCCCCCc--------cccccCCHHHHhh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQPV--------TWKRASSMDEVLR  235 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~l~ell~  235 (328)
                      ++|+|||.|.||..+|..++ ..|.+|++||+++......  .....-+...+.+....        ......+.++ ++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la-~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~   81 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCA-VAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LK   81 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hc
Confidence            57999999999999999974 6699999999987543110  00000001111221100        1112345554 79


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      .||+|++++|-..+.+.-+-++.-+.++++++++..+.|  +....|.+.+..
T Consensus        82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~  132 (282)
T PRK05808         82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR  132 (282)
T ss_pred             cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence            999999999977777755556666778999988554444  666788888854

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.35  E-value=3.8e-06  Score=78.37  Aligned_cols=110  Identities=16%  Similarity=0.251  Sum_probs=74.1

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      .+++|||+|+||+.+|+.+. ..|    .+|++|+++.....+.....+       +    ......+.+++++++|+|+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~-~~g~~~~~~V~~~~r~~~~~~~~l~~~~-------~----~~~~~~~~~e~~~~aDvVi   69 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLL-ETEVATPEEIILYSSSKNEHFNQLYDKY-------P----TVELADNEAEIFTKCDHSF   69 (277)
T ss_pred             CEEEEECccHHHHHHHHHHH-HCCCCCcccEEEEeCCcHHHHHHHHHHc-------C----CeEEeCCHHHHHhhCCEEE
Confidence            47999999999999999974 445    689999987543222211111       0    0111357788899999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i  291 (328)
                      +|+| ......++ .+....++++..+|.+.=|  +..+.|.+.+...++
T Consensus        70 lavp-p~~~~~vl-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~~~v  115 (277)
T PRK06928         70 ICVP-PLAVLPLL-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPGLQV  115 (277)
T ss_pred             EecC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCCCCE
Confidence            9999 23344433 3333456778899999777  777788887753334

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.34  E-value=5.2e-07  Score=80.97  Aligned_cols=132  Identities=15%  Similarity=0.226  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHH-hcCCcEEEE-EcCCch
Q 020301          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV-EGFKMNLIY-YDLYQA  200 (328)
Q Consensus       123 vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~-~~fg~~V~~-~d~~~~  200 (328)
                      .++|.+..++...|++.            +|.         ..++++|||+|.+|+.+++.+. ...|+++.+ +|+++.
T Consensus        63 ~~gy~v~~l~~~~~~~l------------~~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~  121 (213)
T PRK05472         63 GVGYNVEELLEFIEKIL------------GLD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPE  121 (213)
T ss_pred             CCCeeHHHHHHHHHHHh------------CCC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChh
Confidence            35688999998888775            121         2357999999999999998531 357888875 576543


Q ss_pred             hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc--CCEEEEcCCCChh---hhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLDKT---TYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l~~plt~~---t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      .. ..       .  -.+   .......++++++++  .|.+++++|.+..   ...+.......-|...++.+|+.||.
T Consensus       122 ~~-~~-------~--i~g---~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~  188 (213)
T PRK05472        122 KI-GT-------K--IGG---IPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDV  188 (213)
T ss_pred             hc-CC-------E--eCC---eEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCC
Confidence            21 00       0  001   111233568888865  9999999997665   22333333445566778999999999


Q ss_pred             ccCHHHHHHHHHc
Q 020301          276 VIDEVALVEHLKQ  288 (328)
Q Consensus       276 ~vde~aL~~aL~~  288 (328)
                      +|+.++|..+|..
T Consensus       189 ~v~~~~l~~~l~~  201 (213)
T PRK05472        189 IVRNVDLTVELQT  201 (213)
T ss_pred             EEEEechHHHHHH
Confidence            9999999999874

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.32  E-value=2.7e-06  Score=80.61  Aligned_cols=107  Identities=17%  Similarity=0.238  Sum_probs=70.6

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhc-CC-CCCccccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NG-EQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      ++|+|||.|.||..+|..|+ ..|.+|.+|++++... +..... +..... .+ ..+.+.....+++++++.||+|++|
T Consensus         2 mkI~iiG~G~mG~~~a~~L~-~~g~~V~~~~r~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~   78 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLA-RNGHDVTLWARDPEQA-AEINAD-RENPRYLPGIKLPDNLRATTDLAEALADADLILVA   78 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCEEEEEECCHHHH-HHHHHc-CcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence            37999999999999999984 6799999999975432 111110 000000 00 0001222345788899999999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCCCccc
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~v  277 (328)
                      +|. ..+..++ +.....++++.++|+++.|--.
T Consensus        79 v~~-~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         79 VPS-QALREVL-KQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             CCH-HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence            995 5666665 3455667889999999766443

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.30  E-value=7.9e-06  Score=82.43  Aligned_cols=132  Identities=20%  Similarity=0.257  Sum_probs=89.1

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHH-hhhhhhhhcCCCCC--------ccccccCCHHHHh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFV-TAYGQFLKANGEQP--------VTWKRASSMDEVL  234 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~-~~~~~~~~~~~~~~--------~~~~~~~~l~ell  234 (328)
                      ++|||||.|.||+.+|..++ ..|.+|..||+++.....  +.. ..+.. ....|...        .......++++ +
T Consensus         6 ~kV~VIGaG~MG~gIA~~la-~aG~~V~l~d~~~e~l~~~~~~i~~~l~~-~~~~G~~~~~~~~~~~~~i~~~~~~~~-l   82 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAA-SAGHQVLLYDIRAEALARAIAGIEARLNS-LVTKGKLTAEECERTLKRLIPVTDLHA-L   82 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHhcCCCCHHHHHHHHhccEEeCCHHH-h
Confidence            57999999999999999975 669999999998764321  111 11111 11222110        01123457766 5


Q ss_pred             hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCC
Q 020301          235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY  304 (328)
Q Consensus       235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~  304 (328)
                      +.||+|+-++|...+.+..+-.+.-+.++++++|. |||.-.   ...+.++++. .-...++..|.+-|.
T Consensus        83 ~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~---i~~iA~~~~~-p~r~~G~HFf~Papv  149 (503)
T TIGR02279        83 ADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLS---ITAIAAGLAR-PERVAGLHFFNPAPV  149 (503)
T ss_pred             CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCC---HHHHHHhcCc-ccceEEEeccCcccc
Confidence            79999999999888888777666666788888877 776644   4567777754 445678887776553

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.30  E-value=7.6e-06  Score=82.67  Aligned_cols=131  Identities=22%  Similarity=0.322  Sum_probs=87.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHH-hhhhhhhhcCCCCC--------ccccccCCHHHHh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFV-TAYGQFLKANGEQP--------VTWKRASSMDEVL  234 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~-~~~~~~~~~~~~~~--------~~~~~~~~l~ell  234 (328)
                      ++|||||.|.||+.+|..++ ..|.+|+.||+++.....  +.. +.+.. ..+.|...        .......++++ +
T Consensus         8 ~~V~VIGaG~MG~gIA~~la-~aG~~V~l~D~~~e~l~~~~~~i~~~l~~-~~~~G~~~~~~~~~~~~~i~~~~~~~~-~   84 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAA-QAGHTVLLYDARAGAAAAARDGIAARLAK-LVEKGKLTAEQADAALARLRPVEALAD-L   84 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence            57999999999999999975 669999999999764321  111 11111 11222100        01123357766 5


Q ss_pred             hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCC
Q 020301          235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (328)
Q Consensus       235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~l-IN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP  303 (328)
                      +.||+|+-++|.+.+.+..+-.+.-..++++++| +|+|.-.+   ..|.++++. .=.-.++..|.+-|
T Consensus        85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~-p~r~~G~hff~Pa~  150 (507)
T PRK08268         85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKH-PERVAGLHFFNPVP  150 (507)
T ss_pred             CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCC-cccEEEEeecCCcc
Confidence            7999999999999998887766655566899999 59987554   467777654 22346777777544

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.28  E-value=1.3e-05  Score=75.15  Aligned_cols=132  Identities=19%  Similarity=0.294  Sum_probs=82.1

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHhh--hh-hhhhcCCCCC--------ccccccCCHHH
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTA--YG-QFLKANGEQP--------VTWKRASSMDE  232 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~~~--~~-~~~~~~~~~~--------~~~~~~~~l~e  232 (328)
                      ++|+|||.|.||..+|..++ ..|.+|+.||+++.....  +....  |+ ......+...        .......++ +
T Consensus         4 ~~I~ViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~   81 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFA-RTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E   81 (291)
T ss_pred             cEEEEECccHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence            58999999999999999974 679999999998754211  10000  00 0000111100        001122345 5


Q ss_pred             HhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCC
Q 020301          233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE  302 (328)
Q Consensus       233 ll~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~E  302 (328)
                      .++.||+|+.++|...+.+.-+-++.-+.++++++|++.+.|  +....+.+.+.. .-.-.++..|.+-
T Consensus        82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~-~~r~ig~hf~~P~  148 (291)
T PRK06035         82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER-KDRFIGMHWFNPA  148 (291)
T ss_pred             HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC-cccEEEEecCCCc
Confidence            679999999999976655554445555667899999888777  466777777754 2234455555443

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.28  E-value=1.6e-06  Score=80.63  Aligned_cols=102  Identities=20%  Similarity=0.341  Sum_probs=76.0

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      .+...++.|||.|.+|..-||++ .++|++|...|.+.+. +....+.|+.      ......+....+++.+.++|+|+
T Consensus       165 GV~~~kv~iiGGGvvgtnaAkiA-~glgA~Vtild~n~~r-l~~ldd~f~~------rv~~~~st~~~iee~v~~aDlvI  236 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKIA-IGLGADVTILDLNIDR-LRQLDDLFGG------RVHTLYSTPSNIEEAVKKADLVI  236 (371)
T ss_pred             CCCCccEEEECCccccchHHHHH-hccCCeeEEEecCHHH-HhhhhHhhCc------eeEEEEcCHHHHHHHhhhccEEE
Confidence            46677899999999999999994 7999999999998643 2222222321      11122234457899999999995


Q ss_pred             Ec--CCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          242 LH--PVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       242 l~--~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      -.  +| ....-.++.++.+++||||+++|+++
T Consensus       237 gaVLIp-gakaPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         237 GAVLIP-GAKAPKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             EEEEec-CCCCceehhHHHHHhcCCCcEEEEEE
Confidence            44  45 34567889999999999999999995

>PRK08507 prephenate dehydrogenase; Validated

Probab=98.27  E-value=3.4e-06  Score=78.48  Aligned_cols=132  Identities=17%  Similarity=0.236  Sum_probs=79.6

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      +|+|||+|.||+.+|+.|+ ..|  .+|++||+++.....         +...|..    ....+++++. +||+|++|+
T Consensus         2 ~I~iIG~G~mG~sla~~l~-~~g~~~~v~~~d~~~~~~~~---------~~~~g~~----~~~~~~~~~~-~aD~Vilav   66 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALK-EKGLISKVYGYDHNELHLKK---------ALELGLV----DEIVSFEELK-KCDVIFLAI   66 (275)
T ss_pred             EEEEEccCHHHHHHHHHHH-hcCCCCEEEEEcCCHHHHHH---------HHHCCCC----cccCCHHHHh-cCCEEEEeC
Confidence            6999999999999999974 445  589999998653211         1112221    0124667765 599999999


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCC------CCCC-CCcccCCCeEE
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMK-PGLSEMKNAIV  317 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~E------P~~~-~~L~~~~nvil  317 (328)
                      |. ..+..++ .+... +++++++++++.   + -..+.+++.+. ..+..++....-      |... ..+++-..+++
T Consensus        67 p~-~~~~~~~-~~l~~-l~~~~iv~d~gs---~-k~~i~~~~~~~-~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il  138 (275)
T PRK08507         67 PV-DAIIEIL-PKLLD-IKENTTIIDLGS---T-KAKIIESVPKH-IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVL  138 (275)
T ss_pred             cH-HHHHHHH-HHHhc-cCCCCEEEECcc---c-hHHHHHHHHHh-cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEE
Confidence            94 3444544 34555 889999999754   2 34456666543 111233433321      1111 13555556778


Q ss_pred             cCCC
Q 020301          318 VPHI  321 (328)
Q Consensus       318 TPHi  321 (328)
                      +|.-
T Consensus       139 ~~~~  142 (275)
T PRK08507        139 CDVE  142 (275)
T ss_pred             ecCC
Confidence            8754

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.26  E-value=3e-06  Score=89.33  Aligned_cols=138  Identities=17%  Similarity=0.158  Sum_probs=89.0

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      ++|||||+|.||+.+|+.+ +..|  .+|++||++.... +.        +.+.+..   .....+++++++++|+|++|
T Consensus         4 ~~I~IIG~G~mG~ala~~l-~~~G~~~~V~~~d~~~~~~-~~--------a~~~g~~---~~~~~~~~~~~~~aDvVila   70 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKAL-RERGLAREVVAVDRRAKSL-EL--------AVSLGVI---DRGEEDLAEAVSGADVIVLA   70 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHH-HhcCCCCEEEEEECChhHH-HH--------HHHCCCC---CcccCCHHHHhcCCCEEEEC
Confidence            6899999999999999997 5666  5899999986542 11        1111221   01235688889999999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC----------CCCcccCC
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------KPGLSEMK  313 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~----------~~~L~~~~  313 (328)
                      +|.. .+..++ ++....++++.++++++.-.-.-.+++.+.+...     ...+..+=|..          ++.|+.-.
T Consensus        71 vp~~-~~~~vl-~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~-----~~r~~~~hPm~G~~~~g~~~a~~~l~~~~  143 (735)
T PRK14806         71 VPVL-AMEKVL-ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGEL-----PAGFVPGHPIAGSEKSGVHAANADLFRNH  143 (735)
T ss_pred             CCHH-HHHHHH-HHHHHhcCCCcEEEEcCCCchHHHHHHHHhcccc-----CCeEEecCCcCcCCcchhhhhhhHHhCCC
Confidence            9943 444444 3344557889999999875432344555554331     12233334421          23577888


Q ss_pred             CeEEcCCCCC
Q 020301          314 NAIVVPHIAS  323 (328)
Q Consensus       314 nvilTPHia~  323 (328)
                      +++++|+-..
T Consensus       144 ~~~~~~~~~~  153 (735)
T PRK14806        144 KVILTPLAET  153 (735)
T ss_pred             eEEEECCCCC
Confidence            8999997543

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.26  E-value=4.8e-06  Score=78.32  Aligned_cols=98  Identities=15%  Similarity=0.210  Sum_probs=74.3

Q ss_pred             HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccH
Q 020301          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (328)
Q Consensus       177 G~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~  256 (328)
                      |+.+|++|+ .-|..|++||+++....+...+    .+...|     .....+..++.+.||+|++|+|..++++.++ .
T Consensus        32 GspMArnLl-kAGheV~V~Drnrsa~e~e~~e----~LaeaG-----A~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~  100 (341)
T TIGR01724        32 GSRMAIEFA-MAGHDVVLAEPNREFMSDDLWK----KVEDAG-----VKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-R  100 (341)
T ss_pred             HHHHHHHHH-HCCCEEEEEeCChhhhhhhhhH----HHHHCC-----CeecCCHHHHHhCCCEEEEecCCHHHHHHHH-H
Confidence            899999974 6799999999876432111000    011223     2234688999999999999999888888887 5


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       257 ~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      ..++.+++|+++||++.   ++.+.+++.|+.
T Consensus       101 GLaa~L~~GaIVID~ST---IsP~t~~~~~e~  129 (341)
T TIGR01724       101 TIIEHVPENAVICNTCT---VSPVVLYYSLEK  129 (341)
T ss_pred             HHHhcCCCCCEEEECCC---CCHHHHHHHHHH
Confidence            68899999999999965   778888888887

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.25  E-value=4.7e-06  Score=83.98  Aligned_cols=119  Identities=18%  Similarity=0.168  Sum_probs=76.2

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHh----hhhhhhhcCCCCCcc-ccccCCHHHHhhcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT----AYGQFLKANGEQPVT-WKRASSMDEVLREAD  238 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~~----~~~~~~~~~~~~~~~-~~~~~~l~ell~~aD  238 (328)
                      ++|||||.|.||..+|..++ .-|.+|++||+++.....  +...    .+.. +........+ .....+++++++.||
T Consensus         5 ~kIavIG~G~MG~~iA~~la-~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~g~i~~~~~~~ea~~~aD   82 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFL-LAGIDVAVFDPHPEAERIIGEVLANAERAYAM-LTDAPLPPEGRLTFCASLAEAVAGAD   82 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhh-hccchhhhhhceEeeCCHHHHhcCCC
Confidence            47999999999999999985 669999999998754211  1000    0000 0000000011 233468889999999


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      +|+.++|...+.+..+-.+.-+.++++++|... ..++ ....|.+.+..
T Consensus        83 ~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~Ss-Tsgi-~~s~l~~~~~~  130 (495)
T PRK07531         83 WIQESVPERLDLKRRVLAEIDAAARPDALIGSS-TSGF-LPSDLQEGMTH  130 (495)
T ss_pred             EEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEc-CCCC-CHHHHHhhcCC
Confidence            999999987766664444455567888755444 4443 46677777754

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.24  E-value=7.2e-05  Score=69.72  Aligned_cols=169  Identities=18%  Similarity=0.282  Sum_probs=106.2

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      .-++.|.+.+....++ ..+++|+.+.+..     ..|+++++.+  ..+++. +++.++-.  |=|-    |+..+.+.
T Consensus        55 ~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--KDVD----Gl~p~N~g  127 (284)
T PRK14170         55 RTEEAGMKSVLIELPE-NVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYD--KDVD----GFHPVNVG  127 (284)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--cCcc----cCChhhhh
Confidence            3456688877665543 3467777766531     5689999864  344443 44443322  2110    21111111


Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~  182 (328)
                      .      ...+.++ ....++.-++.++-                         ..+.++.||++.|||-+. +|+.+|.
T Consensus       128 ~------l~~~~~~-~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvVvGrS~iVGkPla~  175 (284)
T PRK14170        128 N------LFIGKDS-FVPCTPAGIIELIK-------------------------STGTQIEGKRAVVIGRSNIVGKPVAQ  175 (284)
T ss_pred             H------HhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcchHHHHH
Confidence            1      1112222 34555665554431                         124689999999999986 6999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (328)
Q Consensus       183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m  262 (328)
                      +| ..-|+.|..+....                            .++.+.+++||+|+.+++-    .+++..+.+   
T Consensus       176 lL-~~~~atVtichs~T----------------------------~~l~~~~~~ADIvI~AvG~----~~~i~~~~v---  219 (284)
T PRK14170        176 LL-LNENATVTIAHSRT----------------------------KDLPQVAKEADILVVATGL----AKFVKKDYI---  219 (284)
T ss_pred             HH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEecCC----cCccCHHHc---
Confidence            97 56799999875321                            3688999999999999883    456877664   


Q ss_pred             CCCcEEEEcCCCc
Q 020301          263 KKEAILVNCSRGP  275 (328)
Q Consensus       263 k~ga~lIN~aRG~  275 (328)
                      |+|+++||++--.
T Consensus       220 k~GavVIDvGin~  232 (284)
T PRK14170        220 KPGAIVIDVGMDR  232 (284)
T ss_pred             CCCCEEEEccCcc
Confidence            6999999997543

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.23  E-value=6.2e-06  Score=70.40  Aligned_cols=104  Identities=22%  Similarity=0.344  Sum_probs=64.3

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh-cCCC-CCccccccCCHHHHhhcCCEEEEcC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGE-QPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      +|+|+|.|+.|.++|..| ..-|-+|..|.+..+. .+...+. ..... -.+. .+.......+++++++.||+|++++
T Consensus         1 KI~ViGaG~~G~AlA~~l-a~~g~~V~l~~~~~~~-~~~i~~~-~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiiav   77 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALL-ADNGHEVTLWGRDEEQ-IEEINET-RQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAV   77 (157)
T ss_dssp             EEEEESSSHHHHHHHHHH-HHCTEEEEEETSCHHH-HHHHHHH-TSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S
T ss_pred             CEEEECcCHHHHHHHHHH-HHcCCEEEEEeccHHH-HHHHHHh-CCCCCCCCCcccCcccccccCHHHHhCcccEEEecc
Confidence            689999999999999997 5778999999998632 1211110 00000 0000 1112223468999999999999999


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      |. ...+. +-+.....++++..+|++..|=
T Consensus        78 Ps-~~~~~-~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   78 PS-QAHRE-VLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             -G-GGHHH-HHHHHTTTSHTT-EEEETS-SE
T ss_pred             cH-HHHHH-HHHHHhhccCCCCEEEEecCCc
Confidence            93 33333 3355556667899999998764

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.23  E-value=0.00011  Score=68.52  Aligned_cols=170  Identities=17%  Similarity=0.268  Sum_probs=107.1

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 020301           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (328)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~  102 (328)
                      +..++.|.+++.+..++ ..+.+|+.+.+.     ++.|+++++.+  ..+++. +++.++-.  |=|-    |+....+
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~  127 (284)
T PRK14190         55 KAAEKVGIYSELYEFPA-DITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPE--KDVD----GFHPINV  127 (284)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cccc----ccCHhhH
Confidence            34456688887765543 346677766553     15678998864  344443 33333222  2110    1111111


Q ss_pred             hHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHH
Q 020301          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (328)
Q Consensus       103 ~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA  181 (328)
                            |-...+.++ ....++.-++.++=    +                     .+.++.||++.|||-+. +|+.+|
T Consensus       128 ------g~l~~~~~~-~~PcTp~av~~lL~----~---------------------~~i~l~Gk~vvViGrS~iVG~Pla  175 (284)
T PRK14190        128 ------GRMMLGQDT-FLPCTPHGILELLK----E---------------------YNIDISGKHVVVVGRSNIVGKPVG  175 (284)
T ss_pred             ------HHHhcCCCC-CCCCCHHHHHHHHH----H---------------------cCCCCCCCEEEEECCCCccHHHHH
Confidence                  111122233 34455655543331    1                     23579999999999876 799999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhc
Q 020301          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (328)
Q Consensus       182 ~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~  261 (328)
                      .+| ..-|+.|+.++...                            .++.+.+++||+|+.++.-    .++|+.+.+  
T Consensus       176 ~lL-~~~~atVt~chs~t----------------------------~~l~~~~~~ADIvI~AvG~----p~~i~~~~i--  220 (284)
T PRK14190        176 QLL-LNENATVTYCHSKT----------------------------KNLAELTKQADILIVAVGK----PKLITADMV--  220 (284)
T ss_pred             HHH-HHCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecCC----CCcCCHHHc--
Confidence            997 57799999876321                            3688999999999999863    457888887  


Q ss_pred             CCCCcEEEEcCCCc
Q 020301          262 MKKEAILVNCSRGP  275 (328)
Q Consensus       262 mk~ga~lIN~aRG~  275 (328)
                       |+|+++||++.-.
T Consensus       221 -k~gavVIDvGi~~  233 (284)
T PRK14190        221 -KEGAVVIDVGVNR  233 (284)
T ss_pred             -CCCCEEEEeeccc
Confidence             7999999998654

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.22  E-value=1.2e-05  Score=75.93  Aligned_cols=118  Identities=15%  Similarity=0.201  Sum_probs=71.8

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHh----hhhhhhhcCCCC---CccccccCCHHHHhhcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT----AYGQFLKANGEQ---PVTWKRASSMDEVLREAD  238 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~l~ell~~aD  238 (328)
                      ++|||||.|.||..+|..++ ..|.+|++||++.... +...+    .++. ....+..   ........+++++++.||
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~-~~g~~V~~~d~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~aD   81 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFA-RKGLQVVLIDVMEGAL-ERARGVIERALGV-YAPLGIASAGMGRIRMEAGLAAAVSGAD   81 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHH-hCCCeEEEEECCHHHH-HHHHHHHHHHHHH-hhhcccHHHHhhceEEeCCHHHHhccCC
Confidence            57999999999999999974 6799999999976432 11111    0110 0000000   000122357888899999


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      +|++++|...+...-+-.+.-..++++++++..+-|  +....|.+.+..
T Consensus        82 lVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~  129 (311)
T PRK06130         82 LVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVTR  129 (311)
T ss_pred             EEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcCC
Confidence            999999966543332323333446777776544334  346677777753

>PRK07680 late competence protein ComER; Validated

Probab=98.21  E-value=1.1e-05  Score=75.11  Aligned_cols=104  Identities=19%  Similarity=0.275  Sum_probs=72.3

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      ++||||+|.||+.+|+.|. ..|    .+|.+|+|++... +...+.|      .     +.....+.++++..||+|++
T Consensus         2 ~I~iIG~G~mG~ala~~L~-~~g~~~~~~v~v~~r~~~~~-~~~~~~~------~-----g~~~~~~~~~~~~~aDiVil   68 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFL-ESGAVKPSQLTITNRTPAKA-YHIKERY------P-----GIHVAKTIEEVISQSDLIFI   68 (273)
T ss_pred             EEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCHHHH-HHHHHHc------C-----CeEEECCHHHHHHhCCEEEE
Confidence            6999999999999999874 445    3799999986432 2211111      0     11223577888999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~  287 (328)
                      ++| ......++ ++....++++.++|.++-|  +..+.|.+.+.
T Consensus        69 av~-p~~~~~vl-~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         69 CVK-PLDIYPLL-QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             ecC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            998 33455555 3444567788999999844  47777777664

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.21  E-value=5.3e-05  Score=70.46  Aligned_cols=166  Identities=19%  Similarity=0.270  Sum_probs=103.4

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      .-++.|.+.+....++ ..+++++.+.+.     +..|+++++.+  ..++.. +++.++-.  |=|-    |+..+.+ 
T Consensus        55 ~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~-  126 (281)
T PRK14183         55 ACDRVGIYSITHEMPS-TISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPK--KDVD----GFHPYNV-  126 (281)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCch--hccc----ccChhhh-
Confidence            3446688777665543 346677766553     15689999864  345543 44443322  2110    1111111 


Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecC-HHHHHHHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR  182 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G-~IG~~vA~  182 (328)
                           |-...+.++ ....++.-++.++    ++                     .+.++.||++.|||-| .+|+.+|.
T Consensus       127 -----g~l~~g~~~-~~PcTp~avi~lL----~~---------------------~~i~l~Gk~vvViGrS~~VG~Pla~  175 (281)
T PRK14183        127 -----GRLVTGLDG-FVPCTPLGVMELL----EE---------------------YEIDVKGKDVCVVGASNIVGKPMAA  175 (281)
T ss_pred             -----hHHhcCCCC-CCCCcHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCCcchHHHHH
Confidence                 111112232 3444555544332    11                     2358999999999999 79999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (328)
Q Consensus       183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m  262 (328)
                      +| ..-|+.|..+....                            .++.+..++||+|+.++.-    .+++..+.+   
T Consensus       176 lL-~~~~AtVti~hs~T----------------------------~~l~~~~~~ADIvV~AvGk----p~~i~~~~v---  219 (281)
T PRK14183        176 LL-LNANATVDICHIFT----------------------------KDLKAHTKKADIVIVGVGK----PNLITEDMV---  219 (281)
T ss_pred             HH-HHCCCEEEEeCCCC----------------------------cCHHHHHhhCCEEEEecCc----ccccCHHHc---
Confidence            98 56799998775321                            3688999999999999873    456777665   


Q ss_pred             CCCcEEEEcC
Q 020301          263 KKEAILVNCS  272 (328)
Q Consensus       263 k~ga~lIN~a  272 (328)
                      |+|+++||++
T Consensus       220 k~gavvIDvG  229 (281)
T PRK14183        220 KEGAIVIDIG  229 (281)
T ss_pred             CCCcEEEEee
Confidence            6999999998

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.20  E-value=6.5e-05  Score=70.00  Aligned_cols=168  Identities=18%  Similarity=0.279  Sum_probs=106.2

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccH-HHHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      .-++.|.+++....++ ..+++|+.+.+..     ..|+++++.+  ..+++ .+++.++-.  |=|-    |+....+ 
T Consensus        54 ~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KDVD----Gl~~~N~-  125 (282)
T PRK14169         54 RAEDIGVRSLMFRLPE-ATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPD--KDVD----GFSPVSV-  125 (282)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc--cCcc----cCChhhh-
Confidence            3456688887665543 3467777765542     4589999864  34443 344444322  2110    1111111 


Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~  182 (328)
                           |-...+.++ ....++.-++.++=    +                     .+.++.||++.|||-+. +|+.+|.
T Consensus       126 -----g~l~~~~~~-~~PcTp~avi~lL~----~---------------------~~i~l~Gk~vvViGrS~iVGkPla~  174 (282)
T PRK14169        126 -----GRLWANEPT-VVASTPYGIMALLD----A---------------------YDIDVAGKRVVIVGRSNIVGRPLAG  174 (282)
T ss_pred             -----HHHhcCCCC-CCCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCccchHHHHH
Confidence                 111122233 34556665554431    1                     13579999999999986 6999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (328)
Q Consensus       183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m  262 (328)
                      +| ..-|+.|+.+....                            .++.+..++||+|+.+++-    .++++.+.   .
T Consensus       175 lL-~~~~atVtichs~T----------------------------~~l~~~~~~ADIvI~AvG~----p~~i~~~~---v  218 (282)
T PRK14169        175 LM-VNHDATVTIAHSKT----------------------------RNLKQLTKEADILVVAVGV----PHFIGADA---V  218 (282)
T ss_pred             HH-HHCCCEEEEECCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHHH---c
Confidence            97 57799998875321                            3688999999999999883    45688775   5


Q ss_pred             CCCcEEEEcCCC
Q 020301          263 KKEAILVNCSRG  274 (328)
Q Consensus       263 k~ga~lIN~aRG  274 (328)
                      |+|+++||++--
T Consensus       219 k~GavVIDvGin  230 (282)
T PRK14169        219 KPGAVVIDVGIS  230 (282)
T ss_pred             CCCcEEEEeecc
Confidence            799999999743

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.20  E-value=6e-05  Score=70.36  Aligned_cols=186  Identities=22%  Similarity=0.262  Sum_probs=113.1

Q ss_pred             CeEEEEeCCCCchH-H----HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccHH-HHHH
Q 020301           15 KYRVVSTKPMPGTR-W----INLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAA   81 (328)
Q Consensus        15 ~~~vlv~~~~~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~~-~l~~   81 (328)
                      +.-++...+.+... +    .+.-++.|.+++....++ ..+++|+.+.+..     ..|+++++.+  ..++.. +++.
T Consensus        31 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~  109 (287)
T PRK14173         31 HLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPE-STSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEA  109 (287)
T ss_pred             cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhc
Confidence            34444455544432 2    233456688887765543 3467777665531     4689999864  344443 3333


Q ss_pred             hhccCCceEEEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCccccc
Q 020301           82 LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGN  161 (328)
Q Consensus        82 ~~~l~~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~  161 (328)
                      .+-.  |=|-    |+..+.+      |-...+.++ ....++.-++.++-                         ..+.
T Consensus       110 I~p~--KDVD----Gl~~~N~------g~l~~~~~~-~~PcTp~avi~lL~-------------------------~~~i  151 (287)
T PRK14173        110 IDPL--KDVD----GFHPLNV------GRLWMGGEA-LEPCTPAGVVRLLK-------------------------HYGI  151 (287)
T ss_pred             cCcc--cccc----ccChhhh------HHHhcCCCC-CCCCCHHHHHHHHH-------------------------HcCC
Confidence            3222  2110    1111111      111112222 34455655553332                         1235


Q ss_pred             ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ++.||++.|||-+. +|+.+|.+| ..-|+.|+.+....                            .++++..++||+|
T Consensus       152 ~l~Gk~vvViGrS~iVGkPla~lL-~~~~aTVtichs~T----------------------------~~l~~~~~~ADIv  202 (287)
T PRK14173        152 PLAGKEVVVVGRSNIVGKPLAALL-LREDATVTLAHSKT----------------------------QDLPAVTRRADVL  202 (287)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEE
Confidence            79999999999876 799999997 57799999876421                            3788999999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      +.++.-    .+++..+.+   |+|+++||++--.
T Consensus       203 IsAvGk----p~~i~~~~v---k~GavVIDVGin~  230 (287)
T PRK14173        203 VVAVGR----PHLITPEMV---RPGAVVVDVGINR  230 (287)
T ss_pred             EEecCC----cCccCHHHc---CCCCEEEEccCcc
Confidence            999873    467887775   7999999998654

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.19  E-value=1e-05  Score=79.58  Aligned_cols=119  Identities=18%  Similarity=0.224  Sum_probs=74.4

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCC-------Ccc-ccccCCHHHHhhcCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-------PVT-WKRASSMDEVLREAD  238 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~l~ell~~aD  238 (328)
                      +|||||+|.||..+|..|+ ..|.+|++||+++... +........ ..+.+..       ..+ .....++++++++||
T Consensus         2 kI~vIGlG~~G~~lA~~La-~~G~~V~~~d~~~~~v-~~l~~g~~~-~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ad   78 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLA-DLGHEVTGVDIDQEKV-DKLNKGKSP-IYEPGLDELLAKALAAGRLRATTDYEDAIRDAD   78 (411)
T ss_pred             EEEEECCCchhHHHHHHHH-hcCCeEEEEECCHHHH-HHhhcCCCC-CCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence            6999999999999999984 6799999999986532 111100000 0000000       001 223357888899999


Q ss_pred             EEEEcCCCChh------hhccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHH-HHHHc
Q 020301          239 VISLHPVLDKT------TYHLI--NKERLATMKKEAILVNCSRGPVIDEVALV-EHLKQ  288 (328)
Q Consensus       239 iV~l~~plt~~------t~~li--~~~~~~~mk~ga~lIN~aRG~~vde~aL~-~aL~~  288 (328)
                      +|++|+|....      ...+.  -+.....+++|.++|+.|.-.+=-.+.+. ..+++
T Consensus        79 vvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~  137 (411)
T TIGR03026        79 VIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER  137 (411)
T ss_pred             EEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence            99999995432      11222  24456678999999999865544555665 44444

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.18  E-value=1.5e-05  Score=77.94  Aligned_cols=140  Identities=14%  Similarity=0.205  Sum_probs=85.4

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCC------CCccccccCCHHHHhhcCCEE
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE------QPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~ell~~aDiV  240 (328)
                      +|+|||+|.||..+|..++  .|.+|++||++.... +...+..... .+.+.      .........+..++++.||+|
T Consensus         2 kI~VIGlGyvGl~~A~~lA--~G~~VigvD~d~~kv-~~l~~g~~~~-~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~v   77 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIA--QNHEVVALDILPSRV-AMLNDRISPI-VDKEIQQFLQSDKIHFNATLDKNEAYRDADYV   77 (388)
T ss_pred             EEEEECCCHHHHHHHHHHH--hCCcEEEEECCHHHH-HHHHcCCCCC-CCcCHHHHHHhCCCcEEEecchhhhhcCCCEE
Confidence            6999999999999998763  489999999987542 2111100000 00000      001121223467788999999


Q ss_pred             EEcCCCChhhh-cccc--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCC----C
Q 020301          241 SLHPVLDKTTY-HLIN--------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----P  307 (328)
Q Consensus       241 ~l~~plt~~t~-~li~--------~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~----~  307 (328)
                      ++|+|...+-+ +.+|        +... .+++|.++|+.|.-.+=-.+.+.+.+.+..   .   +|.+|.+.+    .
T Consensus        78 ii~Vpt~~~~k~~~~dl~~v~~v~~~i~-~~~~g~lVV~~STv~pgtt~~l~~~~~~~~---v---~~~PE~l~~G~a~~  150 (388)
T PRK15057         78 IIATPTDYDPKTNYFNTSSVESVIKDVV-EINPYAVMVIKSTVPVGFTAAMHKKYRTEN---I---IFSPEFLREGKALY  150 (388)
T ss_pred             EEeCCCCCccCCCCcChHHHHHHHHHHH-hcCCCCEEEEeeecCCchHHHHHHHhhcCc---E---EECcccccCCcccc
Confidence            99999542111 1111        2333 379999999999988877888888776532   2   236666533    2


Q ss_pred             CcccCCCeEE
Q 020301          308 GLSEMKNAIV  317 (328)
Q Consensus       308 ~L~~~~nvil  317 (328)
                      .+...|.|++
T Consensus       151 d~~~p~rvv~  160 (388)
T PRK15057        151 DNLHPSRIVI  160 (388)
T ss_pred             cccCCCEEEE
Confidence            4555566654

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.16  E-value=1.1e-05  Score=74.38  Aligned_cols=104  Identities=16%  Similarity=0.265  Sum_probs=71.8

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCc---EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      +|||||+|+||+.+++.+. ..|.   .+.+|+|+.... +++.+.+       +    +.....+.++++++||+|+++
T Consensus         2 ~IgiIG~G~mG~aia~~L~-~~g~~~~~i~v~~r~~~~~-~~l~~~~-------~----~~~~~~~~~~~~~~aDvVila   68 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLL-TSPADVSEIIVSPRNAQIA-ARLAERF-------P----KVRIAKDNQAVVDRSDVVFLA   68 (258)
T ss_pred             eEEEECcCHHHHHHHHHHH-hCCCChheEEEECCCHHHH-HHHHHHc-------C----CceEeCCHHHHHHhCCEEEEE
Confidence            6999999999999999874 4443   367888876432 2221111       0    112235788899999999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      +| ......++..  + .++++.++|.++  .-+..+.|.+.+..+
T Consensus        69 v~-p~~~~~vl~~--l-~~~~~~~vis~~--ag~~~~~l~~~~~~~  108 (258)
T PRK06476         69 VR-PQIAEEVLRA--L-RFRPGQTVISVI--AATDRAALLEWIGHD  108 (258)
T ss_pred             eC-HHHHHHHHHH--h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence            99 3445555532  3 357899999986  448888888888653

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.16  E-value=6.6e-06  Score=71.05  Aligned_cols=110  Identities=20%  Similarity=0.260  Sum_probs=69.5

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcC-CCCCc------------ccccc
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPV------------TWKRA  227 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~  227 (328)
                      ..+...++.|+|.|+.|+..++.+ +++|++|..+|.++.... +....+.....-. +....            .....
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~-~~lGa~v~~~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIA-KGLGAEVVVPDERPERLR-QLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYE   93 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHH-HHTT-EEEEEESSHHHHH-HHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHH-hHCCCEEEeccCCHHHHH-hhhcccCceEEEcccccccccccchhhhhHHHHHhH
Confidence            457779999999999999999996 799999999998864321 1111110000000 00000            01122


Q ss_pred             CCHHHHhhcCCEEEE-cCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          228 SSMDEVLREADVISL-HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       228 ~~l~ell~~aDiV~l-~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      ..|.+.++.+|+|+. ++--.+..-.++.++.++.|||+++++++|
T Consensus        94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            357889999999875 333356778899999999999999999995

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.16  E-value=0.00025  Score=66.21  Aligned_cols=166  Identities=16%  Similarity=0.266  Sum_probs=104.2

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      ..++.|.+++....++ ..+++++.+.+.     +..|+++++.+  ..+++. +++..+-.  |=|-    |+....+ 
T Consensus        56 ~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~--KDVD----Gl~~~N~-  127 (288)
T PRK14171         56 NAHKIGIDTLLVNLST-TIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPS--KDID----GFHPLNV-  127 (288)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cccc----cCCccch-
Confidence            4456688887665543 356777776654     25689999864  344443 44443322  2110    1111111 


Q ss_pred             HHHhCCceEecC-CCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHH
Q 020301          104 AANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (328)
Q Consensus       104 ~~~~~gI~v~n~-p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA  181 (328)
                           |-...+. ++ ....++.-++.+    +++                     .+.++.||++.|||-+. +|+.+|
T Consensus       128 -----g~l~~g~~~~-~~PcTp~av~~l----L~~---------------------y~i~l~GK~vvViGrS~iVGkPla  176 (288)
T PRK14171        128 -----GYLHSGISQG-FIPCTALGCLAV----IKK---------------------YEPNLTGKNVVIIGRSNIVGKPLS  176 (288)
T ss_pred             -----hhhhcCCCCC-CcCCCHHHHHHH----HHH---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence                 1111221 22 344455543322    221                     13579999999999986 699999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhc
Q 020301          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (328)
Q Consensus       182 ~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~  261 (328)
                      .+| ..-|+.|..++..                            ..+|.+..++||+|+.++.-    .++|..+.+  
T Consensus       177 ~lL-~~~~ATVtichs~----------------------------T~~L~~~~~~ADIvV~AvGk----p~~i~~~~v--  221 (288)
T PRK14171        177 ALL-LKENCSVTICHSK----------------------------THNLSSITSKADIVVAAIGS----PLKLTAEYF--  221 (288)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----CCccCHHHc--
Confidence            997 5679999887632                            14788999999999999883    367888765  


Q ss_pred             CCCCcEEEEcC
Q 020301          262 MKKEAILVNCS  272 (328)
Q Consensus       262 mk~ga~lIN~a  272 (328)
                       |+|+++||++
T Consensus       222 -k~GavVIDvG  231 (288)
T PRK14171        222 -NPESIVIDVG  231 (288)
T ss_pred             -CCCCEEEEee
Confidence             7999999998

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.16  E-value=2.8e-05  Score=70.53  Aligned_cols=138  Identities=20%  Similarity=0.223  Sum_probs=92.1

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc---EEEEEcCCc----hhH--HHHHHhhhhhhhhcCCCCCccccccCCHH
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQ----ATR--LEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~---~V~~~d~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (328)
                      ..+.++++.|+|.|..|+.+|+.| ...|+   +|+.+||+.    ...  +..+...|.   +..+...  . . .++.
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L-~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la---~~~~~~~--~-~-~~l~   92 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLL-LAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIA---KETNPEK--T-G-GTLK   92 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHH-HHcCcCcceEEEEeCCCccccccchhhhHHHHHHH---HHhccCc--c-c-CCHH
Confidence            468889999999999999999997 57788   499999982    211  111111111   1111011  1 1 3687


Q ss_pred             HHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC-ccEEEEeCCCCCCCCCCCcc
Q 020301          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLS  310 (328)
Q Consensus       232 ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~-i~gaalDV~~~EP~~~~~L~  310 (328)
                      +.++++|+|+.+.|     .++++++.++.|+++.++...+.  ...|.-+.+|.+.|. +..-|.         .....
T Consensus        93 ~~l~~~dvlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsn--P~~e~~~~~A~~~ga~i~a~G~---------~~~~~  156 (226)
T cd05311          93 EALKGADVFIGVSR-----PGVVKKEMIKKMAKDPIVFALAN--PVPEIWPEEAKEAGADIVATGR---------SDFPN  156 (226)
T ss_pred             HHHhcCCEEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCC--CCCcCCHHHHHHcCCcEEEeCC---------CCCcc
Confidence            88899999999876     67899999999999999998883  335555555555544 333331         11234


Q ss_pred             cCCCeEEcCCCC
Q 020301          311 EMKNAIVVPHIA  322 (328)
Q Consensus       311 ~~~nvilTPHia  322 (328)
                      +..|+++-|=++
T Consensus       157 Q~nn~~~fPg~~  168 (226)
T cd05311         157 QVNNVLGFPGIF  168 (226)
T ss_pred             ccceeeecchhh
Confidence            678999988765

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.16  E-value=1.4e-05  Score=75.71  Aligned_cols=120  Identities=21%  Similarity=0.214  Sum_probs=72.2

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHhhhhhhhhcCCCCC--------ccccccCCHHHHhh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP--------VTWKRASSMDEVLR  235 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~  235 (328)
                      ++|+|||.|.||..+|..++ ..|.+|++||+++.....  ......-..+...+...        .......+++++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la-~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~   81 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFA-RAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA   81 (308)
T ss_pred             cEEEEECccHHHHHHHHHHH-HCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence            47999999999999999974 679999999998643211  00000000011122110        00123468889999


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      .||+|+.++|...+.+..+-.+.-+..+++.++...+. . .....+.+.+..
T Consensus        82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts-~-~~~~~la~~~~~  132 (308)
T PRK06129         82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTS-A-LLASAFTEHLAG  132 (308)
T ss_pred             CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCC-C-CCHHHHHHhcCC
Confidence            99999999997655544433333233455555543333 3 346678887754

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.15  E-value=9.1e-05  Score=68.89  Aligned_cols=184  Identities=17%  Similarity=0.231  Sum_probs=111.4

Q ss_pred             CeEEEEeCCCCchH-H----HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccHH-HHHH
Q 020301           15 KYRVVSTKPMPGTR-W----INLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAA   81 (328)
Q Consensus        15 ~~~vlv~~~~~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~~-~l~~   81 (328)
                      +..++...+.+... +    .+.-++.|.+++.+..++ ..+++|+.+.+..     +.|+++++.+  ..++.. +++.
T Consensus        34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~  112 (278)
T PRK14172         34 KIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDE-SISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNK  112 (278)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhc
Confidence            34444555554432 2    233456688877665543 3467777765532     5689999864  344443 4444


Q ss_pred             hhccCCceEEEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCccccc
Q 020301           82 LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGN  161 (328)
Q Consensus        82 ~~~l~~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~  161 (328)
                      .+-.  |=|-    |+....+      |-...+.++ ....++.-++.++    ++                     .+.
T Consensus       113 I~p~--KDVD----Gl~~~n~------g~l~~g~~~-~~PcTp~av~~lL----~~---------------------~~i  154 (278)
T PRK14172        113 IDAN--KDID----CLTFISV------GKFYKGEKC-FLPCTPNSVITLI----KS---------------------LNI  154 (278)
T ss_pred             cCcc--cccC----ccCHhhH------HHHhCCCCC-CcCCCHHHHHHHH----HH---------------------hCC
Confidence            3322  2110    1111111      111112222 3344555544332    11                     135


Q ss_pred             ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ++.||++.|||-+. +|+.+|.+| ..-|+.|..++...                            .++.+..++||+|
T Consensus       155 ~l~Gk~vvViGrS~~VGkPla~lL-~~~~AtVt~chs~T----------------------------~~l~~~~~~ADIv  205 (278)
T PRK14172        155 DIEGKEVVVIGRSNIVGKPVAQLL-LNENATVTICHSKT----------------------------KNLKEVCKKADIL  205 (278)
T ss_pred             CCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEE
Confidence            79999999999876 699999997 57799999886421                            3788999999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      +.+++-    .++|..+.   .|+|+++||++-
T Consensus       206 IsAvGk----p~~i~~~~---ik~gavVIDvGi  231 (278)
T PRK14172        206 VVAIGR----PKFIDEEY---VKEGAIVIDVGT  231 (278)
T ss_pred             EEcCCC----cCccCHHH---cCCCcEEEEeec
Confidence            999883    45788776   579999999963

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=98.15  E-value=1e-05  Score=77.15  Aligned_cols=102  Identities=17%  Similarity=0.131  Sum_probs=65.2

Q ss_pred             EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh--hhhhhhc----CCCCCccccccCCHHHHhhcCCEEE
Q 020301          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA--YGQFLKA----NGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       168 vgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      |||+|||+||+.+++.+.+.-+++|++...............  |......    ......+.....++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            699999999999999864445789887644322211111111  1100000    0000111122347999999999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .|.   +.+.+..|.+.+.+|+++++|+-.-
T Consensus        81 e~T---p~~~~~~na~~~~~~GakaVl~~~p  108 (333)
T TIGR01546        81 DAT---PGGIGAKNKPLYEKAGVKAIFQGGE  108 (333)
T ss_pred             ECC---CCCCChhhHHHHHhCCcCEEEECCC
Confidence            885   5778899999999999999988753

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.14  E-value=2.3e-05  Score=71.35  Aligned_cols=109  Identities=19%  Similarity=0.277  Sum_probs=68.7

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcC--CcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGF--KMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~f--g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ...+|||||.|++|+.+++.+++..  ..+ +++++++.....+.....|       +     .....+++++++++|+|
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~DiV   70 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY-------N-----VSTTTDWKQHVTSVDTI   70 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc-------C-----cEEeCChHHHHhcCCEE
Confidence            3568999999999999999874331  244 7778875333333222211       1     12235788999999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      ++++|. ...+.++ ++.-..++ +.++|.++=|  ++.+.|.+.+..+
T Consensus        71 iiavp~-~~~~~v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~  114 (245)
T PRK07634         71 VLAMPP-SAHEELL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG  114 (245)
T ss_pred             EEecCH-HHHHHHH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence            999993 2333333 22212233 5688999766  5666777777554

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.13  E-value=9.9e-05  Score=69.27  Aligned_cols=169  Identities=21%  Similarity=0.201  Sum_probs=105.0

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~---~--~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      .-++.|.+.+....+. ..+++|+.+.+.   .  ..|+++++.+  ..+++. +++..+-.  |       -+|.+.-.
T Consensus        56 ~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--K-------DVDGl~~~  125 (297)
T PRK14186         56 ACARVGIASFGKHLPA-DTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD--K-------DADGLHPL  125 (297)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcccCChh
Confidence            3456688877665543 346777766553   1  4589999864  344433 44444322  2       11222111


Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~  182 (328)
                         ..|-...+.++ ....+|.-++.++-                         ..+.++.||++.|||-+. +|+.+|.
T Consensus       126 ---n~g~l~~~~~~-~~PcTp~aii~lL~-------------------------~~~i~l~Gk~vvVIGrS~iVGkPla~  176 (297)
T PRK14186        126 ---NLGRLVKGEPG-LRSCTPAGVMRLLR-------------------------SQQIDIAGKKAVVVGRSILVGKPLAL  176 (297)
T ss_pred             ---hHHHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccchHHHHH
Confidence               01111122222 33445555443331                         123589999999999876 6999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (328)
Q Consensus       183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m  262 (328)
                      +| ..-|+.|..+....                            .++++..++||+|+.+++-    .+++..+.+   
T Consensus       177 lL-~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIvIsAvGk----p~~i~~~~i---  220 (297)
T PRK14186        177 ML-LAANATVTIAHSRT----------------------------QDLASITREADILVAAAGR----PNLIGAEMV---  220 (297)
T ss_pred             HH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHHHc---
Confidence            97 57799998875321                            3788999999999999983    357887664   


Q ss_pred             CCCcEEEEcCCCc
Q 020301          263 KKEAILVNCSRGP  275 (328)
Q Consensus       263 k~ga~lIN~aRG~  275 (328)
                      |+|+++||++--.
T Consensus       221 k~gavVIDvGin~  233 (297)
T PRK14186        221 KPGAVVVDVGIHR  233 (297)
T ss_pred             CCCCEEEEecccc
Confidence            7999999997544

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.12  E-value=8.8e-05  Score=69.61  Aligned_cols=79  Identities=16%  Similarity=0.253  Sum_probs=63.7

Q ss_pred             cccCCCEEEEEecCH-HHHHHHHHHHhc---CCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc
Q 020301          161 NLLKGQTVGVIGAGR-IGSAYARMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~-IG~~vA~~l~~~---fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (328)
                      .++.||++.|||-+. +|+.+|.+|.+.   -|+.|..+....                            .++++.+++
T Consensus       155 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t----------------------------~~l~~~~~~  206 (295)
T PRK14174        155 IETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT----------------------------KDIPSYTRQ  206 (295)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc----------------------------hhHHHHHHh
Confidence            579999999999986 699999987432   478887765321                            368899999


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      ||+|+.+++..    ++|..+.+   |+|+++||++--
T Consensus       207 ADIvI~Avg~~----~li~~~~v---k~GavVIDVgi~  237 (295)
T PRK14174        207 ADILIAAIGKA----RFITADMV---KPGAVVIDVGIN  237 (295)
T ss_pred             CCEEEEecCcc----CccCHHHc---CCCCEEEEeecc
Confidence            99999999632    77999887   899999999743

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.12  E-value=1.6e-05  Score=69.56  Aligned_cols=129  Identities=19%  Similarity=0.236  Sum_probs=81.1

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHH--HHHHhhhhhhhhcCCCCC--------ccccccCCHHHHhhc
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQP--------VTWKRASSMDEVLRE  236 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~~  236 (328)
                      +|+|||.|.||+.+|..++ ..|++|..||+++....  .++...+-......+...        .......+++++. .
T Consensus         1 ~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~   78 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFA-RAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D   78 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHH-HTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred             CEEEEcCCHHHHHHHHHHH-hCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence            6999999999999999975 67999999999876421  122222111111222111        1123357889988 9


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~  300 (328)
                      ||+|+=++|-..+.+.-+-++.=+.++++++|...+.+  +.-..|.+++.. .-+-.++=.|.
T Consensus        79 adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~-p~R~ig~Hf~~  139 (180)
T PF02737_consen   79 ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSR-PERFIGMHFFN  139 (180)
T ss_dssp             ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSST-GGGEEEEEE-S
T ss_pred             hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCc-CceEEEEeccc
Confidence            99999999988888877777777788999988766443  566777777753 33455555553

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.11  E-value=9.5e-05  Score=69.03  Aligned_cols=166  Identities=19%  Similarity=0.225  Sum_probs=103.7

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      ..++.|.+.+....++ ..+++|+.+.+.     ++.|+++++.+  ..+++. +++..+-.  |       -+|.+--.
T Consensus        55 ~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~--K-------DVDGl~~~  124 (286)
T PRK14184         55 ACEDAGIVSEAFRLPA-DTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPA--K-------DVDGFHPE  124 (286)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcc--c-------CcccCCHh
Confidence            4456688877665543 356777776553     15689999864  344443 33333222  2       11222110


Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~  182 (328)
                         ..|-...+.++ ....++.-++.++    ++                     .+.++.||++.|||-+. +|+.+|.
T Consensus       125 ---N~g~l~~~~~~-~~PcTp~av~~lL----~~---------------------~~i~l~Gk~vvViGrS~iVG~Pla~  175 (286)
T PRK14184        125 ---NMGRLALGLPG-FRPCTPAGVMTLL----ER---------------------YGLSPAGKKAVVVGRSNIVGKPLAL  175 (286)
T ss_pred             ---hHHHHhCCCCC-CCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHHHH
Confidence               01111122233 3344555433222    11                     23579999999999987 6999999


Q ss_pred             HHHhc----CCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHH
Q 020301          183 MMVEG----FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (328)
Q Consensus       183 ~l~~~----fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~  258 (328)
                      +| ..    -|++|..++...                            .++.+.+++||+|+.+++    ..++|..+.
T Consensus       176 lL-~~~~~~~~AtVt~~hs~t----------------------------~~l~~~~~~ADIVI~AvG----~p~li~~~~  222 (286)
T PRK14184        176 ML-GAPGKFANATVTVCHSRT----------------------------PDLAEECREADFLFVAIG----RPRFVTADM  222 (286)
T ss_pred             HH-hCCcccCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecC----CCCcCCHHH
Confidence            97 45    689998876421                            368899999999999985    356788877


Q ss_pred             HhcCCCCcEEEEcC
Q 020301          259 LATMKKEAILVNCS  272 (328)
Q Consensus       259 ~~~mk~ga~lIN~a  272 (328)
                      +   |+|+++||++
T Consensus       223 v---k~GavVIDVG  233 (286)
T PRK14184        223 V---KPGAVVVDVG  233 (286)
T ss_pred             c---CCCCEEEEee
Confidence            7   8999999997

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.11  E-value=0.00011  Score=68.39  Aligned_cols=167  Identities=19%  Similarity=0.281  Sum_probs=104.4

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      ..++.|.+.+....++ ..+++++.+.+.     +..|+++++.+  ..+++. +++..+-.  |=|-    |+..+.+-
T Consensus        54 ~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~g  126 (282)
T PRK14166         54 ACEECGIKSLVYHLNE-NTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS--KDVD----GFHPINVG  126 (282)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCChhhhH
Confidence            3456688877665543 356777776654     25689999864  344443 33433322  2111    22111111


Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~  182 (328)
                      ... .|    ..++ ....++.-++.++=    +                     .+.++.||++.|||-+. +|+.+|.
T Consensus       127 ~l~-~g----~~~~-~~PcTp~avi~lL~----~---------------------y~i~l~Gk~vvVvGrS~iVGkPla~  175 (282)
T PRK14166        127 YLN-LG----LESG-FLPCTPLGVMKLLK----A---------------------YEIDLEGKDAVIIGASNIVGRPMAT  175 (282)
T ss_pred             HHh-cC----CCCC-CcCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCCcchHHHHH
Confidence            110 01    0122 34455655543331    1                     23579999999999986 6999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (328)
Q Consensus       183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m  262 (328)
                      +| ..-|+.|..++...                            .++++..++||+|+.++.-    .+++..+.   .
T Consensus       176 lL-~~~~atVt~chs~T----------------------------~nl~~~~~~ADIvIsAvGk----p~~i~~~~---v  219 (282)
T PRK14166        176 ML-LNAGATVSVCHIKT----------------------------KDLSLYTRQADLIIVAAGC----VNLLRSDM---V  219 (282)
T ss_pred             HH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcCCC----cCccCHHH---c
Confidence            97 56799999876431                            3688999999999999883    46788876   4


Q ss_pred             CCCcEEEEcC
Q 020301          263 KKEAILVNCS  272 (328)
Q Consensus       263 k~ga~lIN~a  272 (328)
                      |+|+++||++
T Consensus       220 k~GavVIDvG  229 (282)
T PRK14166        220 KEGVIVVDVG  229 (282)
T ss_pred             CCCCEEEEec
Confidence            7999999998

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.08  E-value=2e-05  Score=73.07  Aligned_cols=107  Identities=20%  Similarity=0.355  Sum_probs=69.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhc-CCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~-fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .++||||+|.||+.+++.+.+. .+++ +.++|+++... +++.+.|       +     ...+.++++++.++|+|++|
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a-~~~a~~~-------~-----~~~~~~~~ell~~~DvVvi~   68 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKA-ENLASKT-------G-----AKACLSIDELVEDVDLVVEC   68 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHH-HHHHHhc-------C-----CeeECCHHHHhcCCCEEEEc
Confidence            3799999999999999987432 3676 44688876432 2211111       1     12346899999999999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCC
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP  290 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde---~aL~~aL~~g~  290 (328)
                      .|  ++...-+   ....++.|.-++..+-|.+.|.   +.|.++.+++.
T Consensus        69 a~--~~~~~~~---~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g  113 (265)
T PRK13304         69 AS--VNAVEEV---VPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN  113 (265)
T ss_pred             CC--hHHHHHH---HHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence            87  3333222   2233455666777788888764   46777766654

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.08  E-value=0.00013  Score=67.94  Aligned_cols=168  Identities=16%  Similarity=0.230  Sum_probs=104.6

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccH-HHHHHhhccCCceEEEccccCCccCh
Q 020301           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV  102 (328)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~id~  102 (328)
                      +..++.|.+.+....++ ..+++|+.+.+.     +..|+++++.+  ..+++ .+++..+-.  |=|-    |+..+.+
T Consensus        56 k~~~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~  128 (284)
T PRK14177         56 KACHKVGMGSEMIRLKE-QTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALE--KDVD----GVTTLSF  128 (284)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cccc----cCChhhH
Confidence            34456788877665433 346777766553     25689999864  23443 344443222  2110    2111111


Q ss_pred             hHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHH
Q 020301          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (328)
Q Consensus       103 ~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA  181 (328)
                            |-...+.+. ....++.-++.++    ++                     .+.++.||++.|||-+. +|+.+|
T Consensus       129 ------g~l~~g~~~-~~PcTp~avi~ll----~~---------------------y~i~l~Gk~vvViGrS~iVGkPla  176 (284)
T PRK14177        129 ------GKLSMGVET-YLPCTPYGMVLLL----KE---------------------YGIDVTGKNAVVVGRSPILGKPMA  176 (284)
T ss_pred             ------HHHHcCCCC-CCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence                  111122232 3344565444322    11                     13579999999999986 699999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhc
Q 020301          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (328)
Q Consensus       182 ~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~  261 (328)
                      .+| ..-|+.|+.++...                            .++.+..++||+|+.++.-    .+++..+.+  
T Consensus       177 ~lL-~~~~atVt~chs~T----------------------------~~l~~~~~~ADIvIsAvGk----~~~i~~~~i--  221 (284)
T PRK14177        177 MLL-TEMNATVTLCHSKT----------------------------QNLPSIVRQADIIVGAVGK----PEFIKADWI--  221 (284)
T ss_pred             HHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEeCCC----cCccCHHHc--
Confidence            997 57799999886421                            3788999999999999873    456877664  


Q ss_pred             CCCCcEEEEcCC
Q 020301          262 MKKEAILVNCSR  273 (328)
Q Consensus       262 mk~ga~lIN~aR  273 (328)
                       |+|+++||++-
T Consensus       222 -k~gavVIDvGi  232 (284)
T PRK14177        222 -SEGAVLLDAGY  232 (284)
T ss_pred             -CCCCEEEEecC
Confidence             79999999974

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=98.08  E-value=0.00015  Score=68.12  Aligned_cols=78  Identities=17%  Similarity=0.274  Sum_probs=64.5

Q ss_pred             ccccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      +.++.||++.|||-+. +|+.+|.+| ..-|+.|+.++...                            .++++.+++||
T Consensus       162 ~i~l~Gk~vvVIGRS~iVGkPla~lL-~~~~ATVtvchs~T----------------------------~nl~~~~~~AD  212 (299)
T PLN02516        162 GIPIKGKKAVVVGRSNIVGLPVSLLL-LKADATVTVVHSRT----------------------------PDPESIVREAD  212 (299)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCC
Confidence            3589999999999986 699999997 56799999885421                            36889999999


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      +|+.++.-    .+++..+.+   |+|+++||++-
T Consensus       213 Ivv~AvGk----~~~i~~~~v---k~gavVIDvGi  240 (299)
T PLN02516        213 IVIAAAGQ----AMMIKGDWI---KPGAAVIDVGT  240 (299)
T ss_pred             EEEEcCCC----cCccCHHHc---CCCCEEEEeec
Confidence            99999873    378888765   79999999974

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.06  E-value=0.00049  Score=64.12  Aligned_cols=169  Identities=17%  Similarity=0.151  Sum_probs=106.2

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      .-++.|.+.+.+..++ ..+++++.+.+.     ++.|+++++.+  ..+++. +++.++-.  |       -+|.+.. 
T Consensus        54 ~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~--K-------DVDGl~~-  122 (282)
T PRK14182         54 DCEEVGITSVEHHLPA-TTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPA--K-------DADGFHP-  122 (282)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcCCCCH-
Confidence            3456688887765543 346777776653     25689999864  344443 44443322  2       1222211 


Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~  182 (328)
                        ...|-...+.++.....+|.-++.++    ++                     .+.++.||++.|||-+. +|+.+|.
T Consensus       123 --~n~g~l~~g~~~~~~PcTp~avi~ll----~~---------------------~~i~l~Gk~vvViGrS~iVGkPla~  175 (282)
T PRK14182        123 --FNVGALSIGIAGVPRPCTPAGVMRML----DE---------------------ARVDPKGKRALVVGRSNIVGKPMAM  175 (282)
T ss_pred             --hHHHHHhCCCCCCCCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCcchHHHHH
Confidence              11121222333322344555544333    11                     13579999999999986 6999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (328)
Q Consensus       183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m  262 (328)
                      +| ..-|+.|..++...                            .++++..++||+|+.+++-    .++|..+.+   
T Consensus       176 lL-~~~~AtVtichs~T----------------------------~nl~~~~~~ADIvI~AvGk----~~~i~~~~i---  219 (282)
T PRK14182        176 ML-LERHATVTIAHSRT----------------------------ADLAGEVGRADILVAAIGK----AELVKGAWV---  219 (282)
T ss_pred             HH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEecCC----cCccCHHHc---
Confidence            97 56789999876431                            3688999999999999873    567888765   


Q ss_pred             CCCcEEEEcCCC
Q 020301          263 KKEAILVNCSRG  274 (328)
Q Consensus       263 k~ga~lIN~aRG  274 (328)
                      |+|+++||++--
T Consensus       220 k~gaiVIDvGin  231 (282)
T PRK14182        220 KEGAVVIDVGMN  231 (282)
T ss_pred             CCCCEEEEeece
Confidence            699999999743

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.06  E-value=0.00017  Score=67.15  Aligned_cols=78  Identities=15%  Similarity=0.283  Sum_probs=63.9

Q ss_pred             ccccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      +.++.||++.|||-+. +|+.+|.+| ..-|+.|..++...                            .++.+..++||
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL-~~~~ATVt~chs~T----------------------------~dl~~~~k~AD  203 (282)
T PRK14180        153 GIKTEGAYAVVVGASNVVGKPVSQLL-LNAKATVTTCHRFT----------------------------TDLKSHTTKAD  203 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEEcCCC----------------------------CCHHHHhhhcC
Confidence            3579999999999876 699999997 56799999876421                            37888999999


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      +|+.+++-    .++|..+.   .|+|+++||++-
T Consensus       204 IvIsAvGk----p~~i~~~~---vk~gavVIDvGi  231 (282)
T PRK14180        204 ILIVAVGK----PNFITADM---VKEGAVVIDVGI  231 (282)
T ss_pred             EEEEccCC----cCcCCHHH---cCCCcEEEEecc
Confidence            99999883    45687766   479999999974

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.05  E-value=0.00016  Score=67.72  Aligned_cols=78  Identities=18%  Similarity=0.259  Sum_probs=64.5

Q ss_pred             ccccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      +.++.||++.|||-+. +|+.+|.+| ..-|+.|..++...                            .++.+.+++||
T Consensus       155 ~i~l~Gk~vvViGrS~iVGkPla~lL-~~~~aTVt~chs~T----------------------------~~l~~~~~~AD  205 (294)
T PRK14187        155 TRNLSGSDAVVIGRSNIVGKPMACLL-LGENCTVTTVHSAT----------------------------RDLADYCSKAD  205 (294)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHH-hhCCCEEEEeCCCC----------------------------CCHHHHHhhCC
Confidence            3579999999999986 699999997 57899999876421                            37889999999


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      +|+.++.-    .+++..+.+   |+|+++||++-
T Consensus       206 IvVsAvGk----p~~i~~~~i---k~gaiVIDVGi  233 (294)
T PRK14187        206 ILVAAVGI----PNFVKYSWI---KKGAIVIDVGI  233 (294)
T ss_pred             EEEEccCC----cCccCHHHc---CCCCEEEEecc
Confidence            99999883    456887775   69999999964

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=98.05  E-value=0.00012  Score=69.68  Aligned_cols=170  Identities=15%  Similarity=0.268  Sum_probs=105.9

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      .-++.|.+.+....++ ..+++|+.+.+..     +.|+++++.+  ..+++. +++...-.  |=|-    |+..+.+-
T Consensus       110 ~a~~~GI~~~~~~l~~-~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~--KDVD----Gl~p~N~G  182 (345)
T PLN02897        110 ACEETGIKSLLAELPE-DCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLE--KDVD----GFHPLNVG  182 (345)
T ss_pred             HHHhcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----CCCHHHHH
Confidence            3456688877665543 3467777766531     5689999864  345554 33333222  2111    22111111


Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~  182 (328)
                      .....|    +.++ ....++.-++.++-                         ..+.++.||++.|||-+. +|+.+|.
T Consensus       183 ~L~~~~----~~~~-~~PCTp~avi~LL~-------------------------~~~i~l~GK~vvVIGRS~iVGkPla~  232 (345)
T PLN02897        183 NLAMRG----REPL-FVSCTPKGCVELLI-------------------------RSGVEIAGKNAVVIGRSNIVGLPMSL  232 (345)
T ss_pred             HHhcCC----CCCC-CcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccccHHHHH
Confidence            111000    0122 34555665554441                         123579999999999987 6999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (328)
Q Consensus       183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m  262 (328)
                      +| ..-|+.|..+....                            .++++..++||+|+.++.-    .+++..+.+   
T Consensus       233 LL-~~~~ATVTicHs~T----------------------------~nl~~~~~~ADIvIsAvGk----p~~v~~d~v---  276 (345)
T PLN02897        233 LL-QRHDATVSTVHAFT----------------------------KDPEQITRKADIVIAAAGI----PNLVRGSWL---  276 (345)
T ss_pred             HH-HHCCCEEEEEcCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHHHc---
Confidence            97 56799998875321                            3688999999999999883    457887765   


Q ss_pred             CCCcEEEEcCCC
Q 020301          263 KKEAILVNCSRG  274 (328)
Q Consensus       263 k~ga~lIN~aRG  274 (328)
                      |+|+++||++--
T Consensus       277 k~GavVIDVGin  288 (345)
T PLN02897        277 KPGAVVIDVGTT  288 (345)
T ss_pred             CCCCEEEEcccc
Confidence            799999999743

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=98.04  E-value=0.00021  Score=68.52  Aligned_cols=77  Identities=19%  Similarity=0.258  Sum_probs=63.9

Q ss_pred             cccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      .++.||++.|||-+. +|+.+|.+| ..-|+.|..+...                            ..++++.+++||+
T Consensus       227 i~l~GK~vvVIGRS~iVGkPLa~LL-~~~~ATVTicHs~----------------------------T~nl~~~~r~ADI  277 (364)
T PLN02616        227 VEIKGKRAVVIGRSNIVGMPAALLL-QREDATVSIVHSR----------------------------TKNPEEITREADI  277 (364)
T ss_pred             CCCCCCEEEEECCCccccHHHHHHH-HHCCCeEEEeCCC----------------------------CCCHHHHHhhCCE
Confidence            579999999999986 699999997 5779999987532                            1478899999999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      |+.++.-    .+++..+.+   |+|+++||++-
T Consensus       278 VIsAvGk----p~~i~~d~v---K~GAvVIDVGI  304 (364)
T PLN02616        278 IISAVGQ----PNMVRGSWI---KPGAVVIDVGI  304 (364)
T ss_pred             EEEcCCC----cCcCCHHHc---CCCCEEEeccc
Confidence            9999873    467887765   79999999974

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.04  E-value=1.7e-05  Score=78.25  Aligned_cols=102  Identities=19%  Similarity=0.271  Sum_probs=72.8

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .+.|++++|+|.|.||+.+++.| ...| .+|++++++.... ++....+       +..   .....++.+.+..+|+|
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L-~~~G~~~V~v~~rs~~ra-~~la~~~-------g~~---~i~~~~l~~~l~~aDvV  244 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHL-LRKGVGKILIANRTYERA-EDLAKEL-------GGE---AVKFEDLEEYLAEADIV  244 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHc-------CCe---EeeHHHHHHHHhhCCEE
Confidence            47899999999999999999997 5789 7899999986532 2222211       111   11224677889999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCC----CCcEEEEcCCCcccC
Q 020301          241 SLHPVLDKTTYHLINKERLATMK----KEAILVNCSRGPVID  278 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk----~ga~lIN~aRG~~vd  278 (328)
                      +.|.+   .+..+++.+.++.+.    ...++|+.+...=||
T Consensus       245 i~aT~---s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid  283 (417)
T TIGR01035       245 ISSTG---APHPIVSKEDVERALRERTRPLFIIDIAVPRDVD  283 (417)
T ss_pred             EECCC---CCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence            99965   556788988887752    245899998644344

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.03  E-value=7.9e-06  Score=67.41  Aligned_cols=109  Identities=21%  Similarity=0.308  Sum_probs=58.8

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      ...+|||||.|++|..+++.| +.-|..|.++ +|+.... ++...          .  .......++++++..||++++
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL-~~ag~~v~~v~srs~~sa-~~a~~----------~--~~~~~~~~~~~~~~~aDlv~i   74 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARAL-ARAGHEVVGVYSRSPASA-ERAAA----------F--IGAGAILDLEEILRDADLVFI   74 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHH-HHTTSEEEEESSCHH-HH-HHHHC--------------TT-----TTGGGCC-SEEEE
T ss_pred             CccEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCcccc-ccccc----------c--cccccccccccccccCCEEEE
Confidence            345899999999999999997 6779998765 5554221 11100          0  111234678899999999999


Q ss_pred             cCCCChhhhccccHHHHhc--CCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301          243 HPVLDKTTYHLINKERLAT--MKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~--mk~ga~lIN~aRG~~vde~aL~~aL~~g~  290 (328)
                      ++|.. .-.. +-++.-..  .++|.+++=+| |. ..-+-|.-+-+.|.
T Consensus        75 avpDd-aI~~-va~~La~~~~~~~g~iVvHtS-Ga-~~~~vL~p~~~~Ga  120 (127)
T PF10727_consen   75 AVPDD-AIAE-VAEQLAQYGAWRPGQIVVHTS-GA-LGSDVLAPARERGA  120 (127)
T ss_dssp             -S-CC-HHHH-HHHHHHCC--S-TT-EEEES--SS---GGGGHHHHHTT-
T ss_pred             EechH-HHHH-HHHHHHHhccCCCCcEEEECC-CC-ChHHhhhhHHHCCC
Confidence            99944 2222 32333333  67899999884 22 33444444444444

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.02  E-value=0.00021  Score=66.98  Aligned_cols=168  Identities=18%  Similarity=0.240  Sum_probs=103.6

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccH-HHHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      ..++.|.+.+....++ ..+++|+.+.+.     +..|+++++.+  ..+++ .+++..+-.  |=|-    |+..+++ 
T Consensus        55 ~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~-  126 (293)
T PRK14185         55 ACEECGFKSSLIRYES-DVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYR--KDVD----GFHPINV-  126 (293)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--cCcC----CCCHhhH-
Confidence            4456688877665543 346777775543     15689999864  34444 344443322  2110    2211111 


Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~  182 (328)
                           |-...+.++ ....++.-++.++=                         ..+.++.||++.|||-+. +|+.+|.
T Consensus       127 -----g~l~~~~~~-~~PcTp~av~~lL~-------------------------~~~i~l~GK~vvViGrS~iVGkPla~  175 (293)
T PRK14185        127 -----GRMSIGLPC-FVSATPNGILELLK-------------------------RYHIETSGKKCVVLGRSNIVGKPMAQ  175 (293)
T ss_pred             -----HHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCccchHHHHH
Confidence                 111112233 34555655553332                         113579999999999987 6999999


Q ss_pred             HHHhc---CCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHH
Q 020301          183 MMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL  259 (328)
Q Consensus       183 ~l~~~---fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~  259 (328)
                      +|.+.   +++.|..+...                            ..++.+..++||+|+.+++-    .++|..+. 
T Consensus       176 lL~~~~~~~~aTVtvchs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~i~~~~-  222 (293)
T PRK14185        176 LMMQKAYPGDCTVTVCHSR----------------------------SKNLKKECLEADIIIAALGQ----PEFVKADM-  222 (293)
T ss_pred             HHHcCCCCCCCEEEEecCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH-
Confidence            97432   37999887532                            14788999999999999883    45677765 


Q ss_pred             hcCCCCcEEEEcCC
Q 020301          260 ATMKKEAILVNCSR  273 (328)
Q Consensus       260 ~~mk~ga~lIN~aR  273 (328)
                        .|+|+++||++-
T Consensus       223 --vk~gavVIDvGi  234 (293)
T PRK14185        223 --VKEGAVVIDVGT  234 (293)
T ss_pred             --cCCCCEEEEecC
Confidence              579999999974

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.02  E-value=0.00021  Score=66.61  Aligned_cols=169  Identities=21%  Similarity=0.220  Sum_probs=105.5

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      .-++.|.+++....++ ..+++|+.+.+..     ..|+++++.+  ..++.. +++..+-.  |=|-    |+..+.+ 
T Consensus        56 ~a~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~--KDVD----Gl~~~n~-  127 (284)
T PRK14193         56 DCAEVGITSIRRDLPA-DATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPA--KDAD----GLHPTNL-  127 (284)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cCcc----CCChhhh-
Confidence            3446688877665533 3567777765532     4589999864  344443 44444322  2110    1111111 


Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~  182 (328)
                           |-...+.++ ....++.-++.++=                         ..+.++.||++.|||-+. +|+.+|.
T Consensus       128 -----g~l~~~~~~-~~PcTp~av~~ll~-------------------------~~~i~l~Gk~vvViGrS~~VGkPla~  176 (284)
T PRK14193        128 -----GRLVLNEPA-PLPCTPRGIVHLLR-------------------------RYDVELAGAHVVVIGRGVTVGRPIGL  176 (284)
T ss_pred             -----hHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcchHHHHH
Confidence                 111122233 23455555543331                         123589999999999875 7999999


Q ss_pred             HHHhc--CCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHh
Q 020301          183 MMVEG--FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (328)
Q Consensus       183 ~l~~~--fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~  260 (328)
                      +|. .  -++.|..+....                            .++.+.+++||+|+.++.-    .++|..+.+ 
T Consensus       177 lL~-~~~~~atVtvchs~T----------------------------~~l~~~~k~ADIvV~AvGk----p~~i~~~~i-  222 (284)
T PRK14193        177 LLT-RRSENATVTLCHTGT----------------------------RDLAAHTRRADIIVAAAGV----AHLVTADMV-  222 (284)
T ss_pred             HHh-hccCCCEEEEeCCCC----------------------------CCHHHHHHhCCEEEEecCC----cCccCHHHc-
Confidence            974 4  689998876421                            3788999999999999883    357887765 


Q ss_pred             cCCCCcEEEEcCCCc
Q 020301          261 TMKKEAILVNCSRGP  275 (328)
Q Consensus       261 ~mk~ga~lIN~aRG~  275 (328)
                        |+|+++||++.-.
T Consensus       223 --k~GavVIDvGin~  235 (284)
T PRK14193        223 --KPGAAVLDVGVSR  235 (284)
T ss_pred             --CCCCEEEEccccc
Confidence              7999999998544

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.02  E-value=0.00024  Score=66.74  Aligned_cols=169  Identities=15%  Similarity=0.218  Sum_probs=103.8

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 020301           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (328)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~  102 (328)
                      +..++.|.+++....++ ..+++|+...+..     ..++++++.+  ..+++. +++.++-.  |=|-    |+..+.+
T Consensus        54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~  126 (297)
T PRK14167         54 RDCEEVGIEAIDVEIDP-DAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA--KDVD----GFHPENV  126 (297)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cCcc----cCChhhh
Confidence            34456788887765543 3466777665531     4589999864  344443 44433222  2110    1111111


Q ss_pred             hHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHH
Q 020301          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (328)
Q Consensus       103 ~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA  181 (328)
                            |-...+.++ ....++.-++.++=                         ..+.++.||++.|||-+. +|+.+|
T Consensus       127 ------g~l~~g~~~-~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPla  174 (297)
T PRK14167        127 ------GRLVAGDAR-FKPCTPHGIQKLLA-------------------------AAGVDTEGADVVVVGRSDIVGKPMA  174 (297)
T ss_pred             ------HHHhCCCCC-CCCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCcccHHHHH
Confidence                  111112222 34455655543331                         123579999999999986 699999


Q ss_pred             HHHHhcC---CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHH
Q 020301          182 RMMVEGF---KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (328)
Q Consensus       182 ~~l~~~f---g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~  258 (328)
                      .+|.+.+   ++.|..+...                            ..++++..++||+|+.++--    .+++..+.
T Consensus       175 ~lL~~~~~~~~aTVtvchs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~  222 (297)
T PRK14167        175 NLLIQKADGGNATVTVCHSR----------------------------TDDLAAKTRRADIVVAAAGV----PELIDGSM  222 (297)
T ss_pred             HHHhcCccCCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence            9975443   8999887532                            13788999999999998763    35788766


Q ss_pred             HhcCCCCcEEEEcCC
Q 020301          259 LATMKKEAILVNCSR  273 (328)
Q Consensus       259 ~~~mk~ga~lIN~aR  273 (328)
                         .|+|+++||++-
T Consensus       223 ---ik~gaiVIDvGi  234 (297)
T PRK14167        223 ---LSEGATVIDVGI  234 (297)
T ss_pred             ---cCCCCEEEEccc
Confidence               579999999984

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.01  E-value=0.00094  Score=62.42  Aligned_cols=187  Identities=18%  Similarity=0.265  Sum_probs=111.6

Q ss_pred             CeEEEEeCCCCchH-H----HHHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHH
Q 020301           15 KYRVVSTKPMPGTR-W----INLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAA   81 (328)
Q Consensus        15 ~~~vlv~~~~~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~   81 (328)
                      +.-++...+.+... +    .+.-++.|.+.+....++ ..+++|+.+.+.     +..|+++++.+  ..+++. +++.
T Consensus        28 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~  106 (287)
T PRK14181         28 GLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPS-DATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQA  106 (287)
T ss_pred             cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhc
Confidence            34444455554432 1    233456688877665543 346777776653     25689999864  344443 4444


Q ss_pred             hhccCCceEEEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCccccc
Q 020301           82 LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGN  161 (328)
Q Consensus        82 ~~~l~~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~  161 (328)
                      ++-.  |=|-    |+..+.+      |-...+........++.-++.++    ++                     .+.
T Consensus       107 I~p~--KDVD----Gl~p~n~------g~l~~g~~~~~~PcTp~avi~lL----~~---------------------~~i  149 (287)
T PRK14181        107 ISPD--KDVD----GLHPVNM------GKLLLGETDGFIPCTPAGIIELL----KY---------------------YEI  149 (287)
T ss_pred             cCcc--cCcc----cCChhhH------HHHhcCCCCCCCCCCHHHHHHHH----HH---------------------hCC
Confidence            3322  2110    1111111      11111211123444555544332    11                     135


Q ss_pred             ccCCCEEEEEecCH-HHHHHHHHHHhcC----CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc
Q 020301          162 LLKGQTVGVIGAGR-IGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (328)
Q Consensus       162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~f----g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (328)
                      ++.||++.|||-+. +|+.+|.+|. .-    ++.|..+...                            ..++++.+++
T Consensus       150 ~l~Gk~vvViGrS~iVGkPla~lL~-~~~~~~~AtVtvchs~----------------------------T~~l~~~~~~  200 (287)
T PRK14181        150 PLHGRHVAIVGRSNIVGKPLAALLM-QKHPDTNATVTLLHSQ----------------------------SENLTEILKT  200 (287)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHH-hCcCCCCCEEEEeCCC----------------------------CCCHHHHHhh
Confidence            79999999999986 6999999974 44    7899887532                            1478899999


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      ||+|+.+++-    .+++..+.+   |+|+++||++--.
T Consensus       201 ADIvV~AvG~----p~~i~~~~i---k~GavVIDvGin~  232 (287)
T PRK14181        201 ADIIIAAIGV----PLFIKEEMI---AEKAVIVDVGTSR  232 (287)
T ss_pred             CCEEEEccCC----cCccCHHHc---CCCCEEEEecccc
Confidence            9999999873    367888765   6999999997543

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.00  E-value=2.8e-05  Score=66.63  Aligned_cols=81  Identities=21%  Similarity=0.301  Sum_probs=57.4

Q ss_pred             ccccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      +.++.||++.|||-+. +|+.+|.+| ..-|+.|..++.+.                            .++++.+++||
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL-~~~~atVt~~h~~T----------------------------~~l~~~~~~AD   81 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLL-LNKGATVTICHSKT----------------------------KNLQEITRRAD   81 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHH-HHTT-EEEEE-TTS----------------------------SSHHHHHTTSS
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHH-HhCCCeEEeccCCC----------------------------Ccccceeeecc
Confidence            3579999999999996 999999997 67899999876432                            47889999999


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~  276 (328)
                      +|+.++.-    .++|..+.   +|+|+++||++.-..
T Consensus        82 IVVsa~G~----~~~i~~~~---ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   82 IVVSAVGK----PNLIKADW---IKPGAVVIDVGINYV  112 (160)
T ss_dssp             EEEE-SSS----TT-B-GGG---S-TTEEEEE--CEEE
T ss_pred             EEeeeecc----cccccccc---ccCCcEEEecCCccc
Confidence            99999873    55676654   589999999976554

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PLN00203 glutamyl-tRNA reductase

Probab=97.98  E-value=3.5e-05  Score=77.89  Aligned_cols=102  Identities=18%  Similarity=0.216  Sum_probs=72.4

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ++.+++++|||.|.||+.+++.| ...|+ +|++++|+.... +.+...|+      +. ........++.+.+.+||+|
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L-~~~G~~~V~V~nRs~era-~~La~~~~------g~-~i~~~~~~dl~~al~~aDVV  333 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHL-VSKGCTKMVVVNRSEERV-AALREEFP------DV-EIIYKPLDEMLACAAEADVV  333 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHH-HhCCCCeEEEEeCCHHHH-HHHHHHhC------CC-ceEeecHhhHHHHHhcCCEE
Confidence            37899999999999999999997 57887 799999987542 22222221      11 11112234677889999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCC-------cEEEEcCCCc
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKE-------AILVNCSRGP  275 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~g-------a~lIN~aRG~  275 (328)
                      +.+.|   ....+|.++.++.++++       -+|||.|=..
T Consensus       334 IsAT~---s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR  372 (519)
T PLN00203        334 FTSTS---SETPLFLKEHVEALPPASDTVGGKRLFVDISVPR  372 (519)
T ss_pred             EEccC---CCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence            99865   55778899999887432       4888887543

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.98  E-value=3.6e-05  Score=72.04  Aligned_cols=79  Identities=22%  Similarity=0.302  Sum_probs=64.4

Q ss_pred             ccccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      +.++.||++.|||.|. .|+.+|..| ...|++|..+++..                            .++.+.+++||
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L-~~~gatVtv~~~~t----------------------------~~L~~~~~~aD  204 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMML-LNANATVTICHSRT----------------------------QNLPELVKQAD  204 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHH-HhCCCEEEEEeCCc----------------------------hhHHHHhccCC
Confidence            3579999999999998 999999997 57899999988621                            36777889999


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      +|+.+++ .+.   ++..+.   +|+|++++|++-.
T Consensus       205 IvI~AtG-~~~---~v~~~~---lk~gavViDvg~n  233 (283)
T PRK14192        205 IIVGAVG-KPE---LIKKDW---IKQGAVVVDAGFH  233 (283)
T ss_pred             EEEEccC-CCC---cCCHHH---cCCCCEEEEEEEe
Confidence            9999996 222   677655   6899999999743

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.97  E-value=6.5e-05  Score=69.37  Aligned_cols=102  Identities=23%  Similarity=0.330  Sum_probs=66.6

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCC---cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      .+++|||+|.||+.+|+.+. .-|   .+|.+|||+.... +...+.|       +     .....+.++++.+||+|++
T Consensus         3 m~I~iIG~G~mG~~la~~l~-~~g~~~~~v~v~~r~~~~~-~~~~~~~-------g-----~~~~~~~~~~~~~advVil   68 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLL-ASGVPAKDIIVSDPSPEKR-AALAEEY-------G-----VRAATDNQEAAQEADVVVL   68 (267)
T ss_pred             CEEEEEechHHHHHHHHHHH-hCCCCcceEEEEcCCHHHH-HHHHHhc-------C-----CeecCChHHHHhcCCEEEE
Confidence            47999999999999999874 556   6899999986432 2221111       1     1123577888999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~  287 (328)
                      |+|. ...+.++. .....+  +..+|.+.-|-  ..+.|.+.+.
T Consensus        69 ~v~~-~~~~~v~~-~l~~~~--~~~vvs~~~gi--~~~~l~~~~~  107 (267)
T PRK11880         69 AVKP-QVMEEVLS-ELKGQL--DKLVVSIAAGV--TLARLERLLG  107 (267)
T ss_pred             EcCH-HHHHHHHH-HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence            9982 33444332 222223  45777776553  6677777665

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.95  E-value=0.0001  Score=61.82  Aligned_cols=80  Identities=21%  Similarity=0.329  Sum_probs=65.6

Q ss_pred             ccccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      +.++.||++.|+|-+. +|+.+|.+| ...|+.|..++.+.                            .++++.+++||
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL-~~~gatV~~~~~~t----------------------------~~l~~~v~~AD   73 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLL-QRDGATVYSCDWKT----------------------------IQLQSKVHDAD   73 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEeCCCC----------------------------cCHHHHHhhCC
Confidence            4589999999999876 688999987 57899999887431                            36888999999


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      +|+.+++..    ++|+.+.   +|||+++||++...
T Consensus        74 IVvsAtg~~----~~i~~~~---ikpGa~Vidvg~~~  103 (140)
T cd05212          74 VVVVGSPKP----EKVPTEW---IKPGATVINCSPTK  103 (140)
T ss_pred             EEEEecCCC----CccCHHH---cCCCCEEEEcCCCc
Confidence            999998843    5688766   67999999998655

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=97.94  E-value=4.3e-05  Score=76.18  Aligned_cols=117  Identities=15%  Similarity=0.237  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc---CCEEEEcCCCChhhhc
Q 020301          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLHPVLDKTTYH  252 (328)
Q Consensus       176 IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~~plt~~t~~  252 (328)
                      ||+.+|++|+ .-|.+|.+|||++... +++.+.       .+. ..+.....+++++++.   +|+|++++|..+.+..
T Consensus         1 MG~~mA~nL~-~~G~~V~v~nrt~~~~-~~l~~~-------~g~-~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~   70 (459)
T PRK09287          1 MGKNLALNIA-SHGYTVAVYNRTPEKT-DEFLAE-------EGK-GKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDA   70 (459)
T ss_pred             CcHHHHHHHH-hCCCeEEEECCCHHHH-HHHHHh-------hCC-CCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence            6899999984 6799999999997643 222211       010 0123345789998875   8999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCC
Q 020301          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (328)
Q Consensus       253 li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP  303 (328)
                      ++ ...+..|.+|.++||.+....-|...+.+.+++..+.-...=|.-.++
T Consensus        71 Vi-~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~  120 (459)
T PRK09287         71 VI-EQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE  120 (459)
T ss_pred             HH-HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence            88 568899999999999999999999999999988777655554555544

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.92  E-value=5.8e-05  Score=71.63  Aligned_cols=99  Identities=21%  Similarity=0.255  Sum_probs=65.6

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      +.|++++|||.|.||+.+++.+ +..| .+|.++||++... .+....|       +.   ......++.+.+.++|+|+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L-~~~g~~~V~v~~r~~~ra-~~la~~~-------g~---~~~~~~~~~~~l~~aDvVi  243 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHL-AAKGVAEITIANRTYERA-EELAKEL-------GG---NAVPLDELLELLNEADVVI  243 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHc-------CC---eEEeHHHHHHHHhcCCEEE
Confidence            6899999999999999999997 4555 6899999986532 2222222       11   1111235678889999999


Q ss_pred             EcCCCChhhhccccHHHHhcC-CCCcEEEEcCCCc
Q 020301          242 LHPVLDKTTYHLINKERLATM-KKEAILVNCSRGP  275 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~m-k~ga~lIN~aRG~  275 (328)
                      .+.|.. ++..++ +..++.. +++.++||.+...
T Consensus       244 ~at~~~-~~~~~~-~~~~~~~~~~~~~viDlavPr  276 (311)
T cd05213         244 SATGAP-HYAKIV-ERAMKKRSGKPRLIVDLAVPR  276 (311)
T ss_pred             ECCCCC-chHHHH-HHHHhhCCCCCeEEEEeCCCC
Confidence            999843 332222 3333333 3678999998643

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.91  E-value=0.00038  Score=65.37  Aligned_cols=169  Identities=18%  Similarity=0.236  Sum_probs=102.2

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      .-++.|.+.+....++ ..+++|+.+.+..     ..|+++++.+  ..+++. +++..+-.  |=|-    |+..+.+ 
T Consensus        57 ~~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~-  128 (297)
T PRK14168         57 TAHRLGFHEIQDNQSV-DITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPD--KDVD----GFHPVNV-  128 (297)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cccc----ccChhhH-
Confidence            3456688877655433 3477777765532     5689999864  344443 33333222  1110    1111111 


Q ss_pred             HHHhCCceEecC-CCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHH
Q 020301          104 AANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (328)
Q Consensus       104 ~~~~~gI~v~n~-p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA  181 (328)
                           |-...+. .......++.-++.++-                         ..+.++.||++.|||-+. +|+.+|
T Consensus       129 -----g~l~~~~~~~~~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPla  178 (297)
T PRK14168        129 -----GRLMIGGDEVKFLPCTPAGIQEMLV-------------------------RSGVETSGAEVVVVGRSNIVGKPIA  178 (297)
T ss_pred             -----HHHhcCCCCCCCcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcccHHHH
Confidence                 1111111 11234455555543332                         123589999999999876 799999


Q ss_pred             HHHHhc---CCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHH
Q 020301          182 RMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (328)
Q Consensus       182 ~~l~~~---fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~  258 (328)
                      .+|.+.   .++.|..+...                            ..++.+.+++||+|+.++.-    .+++..+.
T Consensus       179 ~lL~~~~~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvVsAvGk----p~~i~~~~  226 (297)
T PRK14168        179 NMMTQKGPGANATVTIVHTR----------------------------SKNLARHCQRADILIVAAGV----PNLVKPEW  226 (297)
T ss_pred             HHHHhcccCCCCEEEEecCC----------------------------CcCHHHHHhhCCEEEEecCC----cCccCHHH
Confidence            997532   27899876532                            13688899999999999863    45688766


Q ss_pred             HhcCCCCcEEEEcCC
Q 020301          259 LATMKKEAILVNCSR  273 (328)
Q Consensus       259 ~~~mk~ga~lIN~aR  273 (328)
                      +   |+|+++||++-
T Consensus       227 i---k~gavVIDvGi  238 (297)
T PRK14168        227 I---KPGATVIDVGV  238 (297)
T ss_pred             c---CCCCEEEecCC
Confidence            4   79999999974

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.91  E-value=0.0001  Score=68.19  Aligned_cols=107  Identities=24%  Similarity=0.343  Sum_probs=78.4

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      +++||||+|+||+.++.-+. .-|    -+|++.+|+.+... ...+.|+       .     ....+.+++..++|+|+
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~-~~g~~~~~~I~v~~~~~e~~~-~l~~~~g-------~-----~~~~~~~~~~~~advv~   67 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLL-KSGALPPEEIIVTNRSEEKRA-ALAAEYG-------V-----VTTTDNQEAVEEADVVF   67 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHH-hcCCCCcceEEEeCCCHHHHH-HHHHHcC-------C-----cccCcHHHHHhhCCEEE
Confidence            47999999999999999874 445    68999999876543 3333442       1     11467789999999999


Q ss_pred             EcCCCChhhhccccHHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHHcCCccEE
Q 020301          242 LHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk---~ga~lIN~aRG~~vde~aL~~aL~~g~i~ga  294 (328)
                      +++.  |+    .-++.++.+|   ++.++|.++=|  |..+.|.++|.+-++..+
T Consensus        68 LavK--Pq----~~~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~vvR~  115 (266)
T COG0345          68 LAVK--PQ----DLEEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLRVVRV  115 (266)
T ss_pred             EEeC--hH----hHHHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCCCceEEe
Confidence            9997  53    2356666666   68999999877  677888888864444443

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.91  E-value=9.6e-05  Score=56.52  Aligned_cols=67  Identities=24%  Similarity=0.390  Sum_probs=53.2

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      ..+.+++++|+|.|.+|+.+++.+ ... +.+|.+||+                                        |+
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l-~~~~~~~v~v~~r----------------------------------------di   57 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLL-ADEGGKKVVLCDR----------------------------------------DI   57 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcC----------------------------------------CE
Confidence            357899999999999999999997 456 567776541                                        99


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      ++.+.+-    .+.+.++....|++++++++++
T Consensus        58 ~i~~~~~----~~~~~~~~~~~~~~~~~v~~~a   86 (86)
T cd05191          58 LVTATPA----GVPVLEEATAKINEGAVVIDLA   86 (86)
T ss_pred             EEEcCCC----CCCchHHHHHhcCCCCEEEecC
Confidence            9988773    3445566788899999999874

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.89  E-value=5.5e-05  Score=72.27  Aligned_cols=95  Identities=18%  Similarity=0.225  Sum_probs=66.2

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      -+++||||.|.+|+..++.+...+ .-+|.+||++.+.. +.+.+.+    .+.+   .....+.+.++++++||+|++|
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~-~~~~~~~----~~~g---~~v~~~~~~~eav~~aDiVita  199 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTR-EKFALRA----SDYE---VPVRAATDPREAVEGCDILVTT  199 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHHH----HhhC---CcEEEeCCHHHHhccCCEEEEe
Confidence            478999999999999777654333 35899999987643 2222221    1111   1123357899999999999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .|.   +.-++..+.   +|||+.+.+++.
T Consensus       200 T~s---~~P~~~~~~---l~~g~~v~~vGs  223 (325)
T TIGR02371       200 TPS---RKPVVKADW---VSEGTHINAIGA  223 (325)
T ss_pred             cCC---CCcEecHHH---cCCCCEEEecCC
Confidence            874   456676654   489999998874

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.89  E-value=4.9e-05  Score=75.19  Aligned_cols=99  Identities=21%  Similarity=0.279  Sum_probs=70.0

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .+.|++++|+|.|.||+.+++.+ ...|+ +|++++|++... ..+...+       +..   .....++.+.+.++|+|
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L-~~~G~~~V~v~~r~~~ra-~~la~~~-------g~~---~~~~~~~~~~l~~aDvV  246 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHL-AEKGVRKITVANRTLERA-EELAEEF-------GGE---AIPLDELPEALAEADIV  246 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHH-HHCCCCeEEEEeCCHHHH-HHHHHHc-------CCc---EeeHHHHHHHhccCCEE
Confidence            47899999999999999999997 68897 899999986432 2222222       111   11224567788999999


Q ss_pred             EEcCCCChhhhccccHHHHhcC-----CCCcEEEEcCCCc
Q 020301          241 SLHPVLDKTTYHLINKERLATM-----KKEAILVNCSRGP  275 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~m-----k~ga~lIN~aRG~  275 (328)
                      +.+.|   ....++..+.++.+     +.+.++|+.+-..
T Consensus       247 I~aT~---s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr  283 (423)
T PRK00045        247 ISSTG---APHPIIGKGMVERALKARRHRPLLLVDLAVPR  283 (423)
T ss_pred             EECCC---CCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence            99976   44556778777664     3567899987533

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.87  E-value=8.4e-05  Score=71.03  Aligned_cols=120  Identities=18%  Similarity=0.216  Sum_probs=74.4

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcC-CCC----CccccccCCHHHHhhcCCEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQ----PVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~ell~~aDiV  240 (328)
                      ++|+|||.|.||..+|..|+ ..|.+|.+||+....  +. ....+...... +..    +.......+. +.++.+|+|
T Consensus         3 mkI~IiG~G~mG~~~A~~L~-~~G~~V~~~~r~~~~--~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v   77 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLA-AAGADVTLIGRARIG--DE-LRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV   77 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHH-hcCCcEEEEecHHHH--HH-HHhcCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence            47999999999999999984 669999999986421  11 11111000000 000    0001112344 567899999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccE
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g  293 (328)
                      ++++|. ++....+ +.....++++.++|.+.-| +-..+.+.+.+.+.++..
T Consensus        78 il~vk~-~~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~~  127 (341)
T PRK08229         78 LVTVKS-AATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVLA  127 (341)
T ss_pred             EEEecC-cchHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEEE
Confidence            999984 5555554 4455667889999888654 445566777776655443

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.86  E-value=9e-05  Score=65.84  Aligned_cols=94  Identities=21%  Similarity=0.271  Sum_probs=65.2

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      ++++|+|.|+||..+|++++ ..|.+|++-+++.++..+...+..       +  +.  ....+.++..+.+|+|++.+|
T Consensus         2 ~~~~i~GtGniG~alA~~~a-~ag~eV~igs~r~~~~~~a~a~~l-------~--~~--i~~~~~~dA~~~aDVVvLAVP   69 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLA-KAGHEVIIGSSRGPKALAAAAAAL-------G--PL--ITGGSNEDAAALADVVVLAVP   69 (211)
T ss_pred             cEEEEeccChHHHHHHHHHH-hCCCeEEEecCCChhHHHHHHHhh-------c--cc--cccCChHHHHhcCCEEEEecc
Confidence            57999999999999999984 779999988766554333211111       1  11  123578899999999999999


Q ss_pred             CChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          246 LDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      ... ... +.++...... |.++|++.-.
T Consensus        70 ~~a-~~~-v~~~l~~~~~-~KIvID~tnp   95 (211)
T COG2085          70 FEA-IPD-VLAELRDALG-GKIVIDATNP   95 (211)
T ss_pred             HHH-HHh-HHHHHHHHhC-CeEEEecCCC
Confidence            532 233 3355665565 8899988653

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.86  E-value=9.6e-05  Score=70.26  Aligned_cols=93  Identities=19%  Similarity=0.235  Sum_probs=62.7

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      ..++++|||.|.+|+.+++.+...++ -+|.+|+|++.. .+++.+.+    ...+.   ......++++++++||+|++
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~-a~~~a~~~----~~~g~---~~~~~~~~~~av~~aDIVi~  195 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAK-AEALAAEL----RAQGF---DAEVVTDLEAAVRQADIISC  195 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHH----HhcCC---ceEEeCCHHHHHhcCCEEEE
Confidence            46789999999999999986543355 579999998754 23333322    11111   12234688999999999987


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~  271 (328)
                      +.|.+   ..++..+   .++||+ +||.
T Consensus       196 aT~s~---~pvl~~~---~l~~g~-~i~~  217 (314)
T PRK06141        196 ATLST---EPLVRGE---WLKPGT-HLDL  217 (314)
T ss_pred             eeCCC---CCEecHH---HcCCCC-EEEe
Confidence            77643   5666654   468999 4554

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.82  E-value=5.6e-05  Score=70.30  Aligned_cols=96  Identities=27%  Similarity=0.347  Sum_probs=68.0

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      -|.||||+|||||+-|..=|..| +--|.+|++--|.....-+.        +.++|.      .+.+.+|+.++||+|.
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNL-RDSGlnViiGlr~g~~s~~k--------A~~dGf------~V~~v~ea~k~ADvim   79 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNL-RDSGLNVIIGLRKGSSSWKK--------AKEDGF------KVYTVEEAAKRADVVM   79 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhh-hhcCCcEEEEecCCchhHHH--------HHhcCC------EeecHHHHhhcCCEEE
Confidence            58999999999999999999997 68888877654433221111        122232      3468999999999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      +.+|.. .-..++.++.-..||.|+.| -.|.|
T Consensus        80 ~L~PDe-~q~~vy~~~I~p~Lk~G~aL-~FaHG  110 (338)
T COG0059          80 ILLPDE-QQKEVYEKEIAPNLKEGAAL-GFAHG  110 (338)
T ss_pred             EeCchh-hHHHHHHHHhhhhhcCCceE-Eeccc
Confidence            999943 33455666777788888743 44444

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.80  E-value=9.9e-05  Score=64.85  Aligned_cols=148  Identities=14%  Similarity=0.161  Sum_probs=75.8

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhh--------hhhhhcCCCCCccccccCCHHHHhhcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREA  237 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (328)
                      ++|+|||+|.+|..+|..|+ ..|.+|++||.++... +......        .+.+++ ...........+.++.+++|
T Consensus         1 M~I~ViGlGyvGl~~A~~lA-~~G~~V~g~D~~~~~v-~~l~~g~~p~~E~~l~~ll~~-~~~~~~l~~t~~~~~ai~~a   77 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALA-EKGHQVIGVDIDEEKV-EALNNGELPIYEPGLDELLKE-NVSAGRLRATTDIEEAIKDA   77 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHH-HTTSEEEEE-S-HHHH-HHHHTTSSSS-CTTHHHHHHH-HHHTTSEEEESEHHHHHHH-
T ss_pred             CEEEEECCCcchHHHHHHHH-hCCCEEEEEeCChHHH-HHHhhccccccccchhhhhcc-ccccccchhhhhhhhhhhcc
Confidence            47999999999999999985 7899999999986531 1111000        000000 00001122335778889999


Q ss_pred             CEEEEcCCCChhhh-ccc--------cHHHHhcCCCCcEEEEcCCCcccCHHHH-HHHHHcCCccEEEEe-CCCCCCCCC
Q 020301          238 DVISLHPVLDKTTY-HLI--------NKERLATMKKEAILVNCSRGPVIDEVAL-VEHLKQNPMFRVGLD-VFEDEPYMK  306 (328)
Q Consensus       238 DiV~l~~plt~~t~-~li--------~~~~~~~mk~ga~lIN~aRG~~vde~aL-~~aL~~g~i~gaalD-V~~~EP~~~  306 (328)
                      |++++|+| ||... +-.        -+...+.++++.++|.-|.-.+=-.+.+ ...|++..-.+.-++ +|.+|=+.+
T Consensus        78 dv~~I~Vp-TP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~  156 (185)
T PF03721_consen   78 DVVFICVP-TPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLRE  156 (185)
T ss_dssp             SEEEE-----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------T
T ss_pred             ceEEEecC-CCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCC
Confidence            99999999 44322 222        2455667889999999999776555533 344443221111111 234554322


Q ss_pred             ----CCcccCCCeEE
Q 020301          307 ----PGLSEMKNAIV  317 (328)
Q Consensus       307 ----~~L~~~~nvil  317 (328)
                          ..+...|+|++
T Consensus       157 G~a~~d~~~~~rvV~  171 (185)
T PF03721_consen  157 GRAIEDFRNPPRVVG  171 (185)
T ss_dssp             TSHHHHHHSSSEEEE
T ss_pred             CCcchhccCCCEEEE
Confidence                24566666664

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.80  E-value=0.00012  Score=68.62  Aligned_cols=119  Identities=13%  Similarity=0.226  Sum_probs=73.1

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcC-CCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      +++|+|.|.||..+|..|+ .-|.+|..|+| .. ..+... ..+-..... +..........+.+++...+|+|++++|
T Consensus         2 kI~IiG~G~iG~~~a~~L~-~~g~~V~~~~r-~~-~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk   77 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLL-EAGRDVTFLVR-PK-RAKALR-ERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK   77 (305)
T ss_pred             eEEEECCCHHHHHHHHHHH-HCCCceEEEec-HH-HHHHHH-hCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec
Confidence            6999999999999999985 56899999998 32 222211 111000000 0000011113456777789999999999


Q ss_pred             CChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      . .++...+ +..-...+++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus        78 ~-~~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~  121 (305)
T PRK12921         78 A-YQLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL  121 (305)
T ss_pred             c-cCHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence            4 4444444 3333445678888877665 44567777777665544

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.78  E-value=8.9e-05  Score=68.50  Aligned_cols=97  Identities=22%  Similarity=0.287  Sum_probs=63.8

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ..+|||||+|+||+++++.+.+ -+    -++++++|+....                    ......+..+++.+||+|
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~-~~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~D~V   61 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIEN-SNIIGKENIYYHTPSKKNT--------------------PFVYLQSNEELAKTCDII   61 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHh-CCCCCcceEEEECCChhcC--------------------CeEEeCChHHHHHhCCEE
Confidence            3589999999999999998753 33    3599998864320                    011235677888999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~  287 (328)
                      ++|+| ...++.++. +....++++ .+|.+.-|  +..+.+.+.+.
T Consensus        62 ilavk-p~~~~~vl~-~i~~~l~~~-~iIS~~aG--i~~~~l~~~~~  103 (260)
T PTZ00431         62 VLAVK-PDLAGKVLL-EIKPYLGSK-LLISICGG--LNLKTLEEMVG  103 (260)
T ss_pred             EEEeC-HHHHHHHHH-HHHhhccCC-EEEEEeCC--ccHHHHHHHcC
Confidence            99998 345555553 333345554 45555444  45666666654

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.78  E-value=0.00013  Score=69.28  Aligned_cols=99  Identities=21%  Similarity=0.211  Sum_probs=60.3

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      +++||||.|..|+.-++.++.-++. +|.+|+|++.. .+++.+.    ++..   ......+.+.++++++||+|+.+.
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~-~~~~~~~----~~~~---~~~v~~~~~~~~av~~aDii~taT  200 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPER-AEAFAAR----LRDL---GVPVVAVDSAEEAVRGADIIVTAT  200 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHH-HHHHHHH----HHCC---CTCEEEESSHHHHHTTSSEEEE--
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhH-HHHHHHh----hccc---cccceeccchhhhcccCCEEEEcc
Confidence            5899999999999999887655665 79999998743 3333332    2221   233345678999999999999997


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCCCcc
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~  276 (328)
                      |.+..+ -+++.+   .+|||+.++.++....
T Consensus       201 ~s~~~~-P~~~~~---~l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  201 PSTTPA-PVFDAE---WLKPGTHINAIGSYTP  228 (313)
T ss_dssp             --SSEE-ESB-GG---GS-TT-EEEE-S-SST
T ss_pred             CCCCCC-ccccHH---HcCCCcEEEEecCCCC
Confidence            755433 777766   4679999999986543

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.78  E-value=0.00016  Score=68.49  Aligned_cols=95  Identities=13%  Similarity=0.129  Sum_probs=67.7

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      ...++++|||.|.+|+..++.+...++. +|.+|+|++.. .+++.+.+    ...+   .... ..+.++++++||+|+
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~-a~~~a~~~----~~~~---~~~~-~~~~~~av~~aDiVi  193 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAAS-AAAFCAHA----RALG---PTAE-PLDGEAIPEAVDLVV  193 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHH-HHHHHHHH----HhcC---CeeE-ECCHHHHhhcCCEEE
Confidence            3567999999999999999987544664 79999998754 33333332    1111   1111 468899999999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .+.|.+   .-+|..    .+|||+.++.++.
T Consensus       194 taT~s~---~Pl~~~----~~~~g~hi~~iGs  218 (304)
T PRK07340        194 TATTSR---TPVYPE----AARAGRLVVAVGA  218 (304)
T ss_pred             EccCCC---CceeCc----cCCCCCEEEecCC
Confidence            998743   466654    2699999999873

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=97.78  E-value=0.00017  Score=64.81  Aligned_cols=102  Identities=14%  Similarity=0.134  Sum_probs=62.3

Q ss_pred             EEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       167 tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      +|+||| .|.||+.+|+.|+ ..|.+|.+++|+++.. +.....+.......+.. .. ....+..+.++++|+|++++|
T Consensus         2 kI~IIGG~G~mG~ala~~L~-~~G~~V~v~~r~~~~~-~~l~~~~~~~~~~~g~~-~~-~~~~~~~ea~~~aDvVilavp   77 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLA-KAGNKIIIGSRDLEKA-EEAAAKALEELGHGGSD-IK-VTGADNAEAAKRADVVILAVP   77 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHH-hCCCEEEEEEcCHHHH-HHHHHHHHhhccccCCC-ce-EEEeChHHHHhcCCEEEEECC
Confidence            699997 8999999999974 6689999999876432 22111110000011110 00 112366788999999999999


Q ss_pred             CChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          246 LDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      . .....++ ++.-..++ +.++|+++-|-
T Consensus        78 ~-~~~~~~l-~~l~~~l~-~~vvI~~~ngi  104 (219)
T TIGR01915        78 W-DHVLKTL-ESLRDELS-GKLVISPVVPL  104 (219)
T ss_pred             H-HHHHHHH-HHHHHhcc-CCEEEEeccCc
Confidence            3 3344433 22222333 58999997664

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.76  E-value=0.00015  Score=65.51  Aligned_cols=116  Identities=24%  Similarity=0.331  Sum_probs=87.6

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH---hhcCCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDiV~l  242 (328)
                      +++|.||+|+||..++++| ..-|-+|++||+++....+         +...+.     ....+++++   |..--+|-+
T Consensus         1 M~iGmiGLGrMG~n~v~rl-~~~ghdvV~yD~n~~av~~---------~~~~ga-----~~a~sl~el~~~L~~pr~vWl   65 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRL-LDGGHDVVGYDVNQTAVEE---------LKDEGA-----TGAASLDELVAKLSAPRIVWL   65 (300)
T ss_pred             CcceeeccchhhHHHHHHH-HhCCCeEEEEcCCHHHHHH---------HHhcCC-----ccccCHHHHHHhcCCCcEEEE
Confidence            3689999999999999997 5779999999999865322         112232     223566665   566789999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~  299 (328)
                      .+|...-|..+| ++.-..|.+|-++|+-+-..--|....++.|++..|.  -+||=
T Consensus        66 MvPag~it~~vi-~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~G  119 (300)
T COG1023          66 MVPAGDITDAVI-DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVG  119 (300)
T ss_pred             EccCCCchHHHH-HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEecc
Confidence            999887777766 5666778899999999887777888888888887664  45653

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=97.75  E-value=0.0002  Score=67.60  Aligned_cols=134  Identities=12%  Similarity=0.165  Sum_probs=92.5

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-cCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV~l~~  244 (328)
                      .+|||||+|++|+-+|+.+ -.-|..|+.+||..-....+   .|            +...++.+.++++ ++|+|.+|+
T Consensus        53 l~IaIIGfGnmGqflAetl-i~aGh~li~hsRsdyssaa~---~y------------g~~~ft~lhdlcerhpDvvLlct  116 (480)
T KOG2380|consen   53 LVIAIIGFGNMGQFLAETL-IDAGHGLICHSRSDYSSAAE---KY------------GSAKFTLLHDLCERHPDVVLLCT  116 (480)
T ss_pred             eEEEEEecCcHHHHHHHHH-HhcCceeEecCcchhHHHHH---Hh------------cccccccHHHHHhcCCCEEEEEe
Confidence            4799999999999999997 47799999999975332221   12            2234567777764 589999987


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCC--C---CCCcccCCCeEEcC
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--M---KPGLSEMKNAIVVP  319 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~--~---~~~L~~~~nvilTP  319 (328)
                      . -..+..++-.--|+++|.|++++++-.-....-+++.+-|-+.-      |....-|.  |   ++....+|=|+.--
T Consensus       117 s-ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdf------DIlctHpmfGPksvnh~wqglpfVydkv  189 (480)
T KOG2380|consen  117 S-ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDF------DILCTHPMFGPKSVNHEWQGLPFVYDKV  189 (480)
T ss_pred             h-hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCcccc------ceEeecCCcCCCcCCCccccCceEEEEe
Confidence            6 34556666666678899999999998888888888888887642      33333332  1   23455566665544


Q ss_pred             CCC
Q 020301          320 HIA  322 (328)
Q Consensus       320 Hia  322 (328)
                      .++
T Consensus       190 Rig  192 (480)
T KOG2380|consen  190 RIG  192 (480)
T ss_pred             ecc
Confidence            333

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.71  E-value=0.00024  Score=62.54  Aligned_cols=110  Identities=18%  Similarity=0.160  Sum_probs=68.5

Q ss_pred             cccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCC--CccccccCCHHHHhhcC
Q 020301          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREA  237 (328)
Q Consensus       161 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~a  237 (328)
                      ..+.++++.|+|. |.+|+.+++.++ ..|.+|..++|+... .++..+.+.+   ..+..  ........++.+.++++
T Consensus        24 ~~l~~~~vlVlGgtG~iG~~~a~~l~-~~g~~V~l~~R~~~~-~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~   98 (194)
T cd01078          24 KDLKGKTAVVLGGTGPVGQRAAVLLA-REGARVVLVGRDLER-AQKAADSLRA---RFGEGVGAVETSDDAARAAAIKGA   98 (194)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEcCCHHH-HHHHHHHHHh---hcCCcEEEeeCCCHHHHHHHHhcC
Confidence            4678999999996 999999999974 678999999988642 2322221110   00110  00011123345788999


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCH
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde  279 (328)
                      |+|+.+.|....+  .+..  -...+++.+++|+.+..-++.
T Consensus        99 diVi~at~~g~~~--~~~~--~~~~~~~~vv~D~~~~~~~~~  136 (194)
T cd01078          99 DVVFAAGAAGVEL--LEKL--AWAPKPLAVAADVNAVPPVGI  136 (194)
T ss_pred             CEEEECCCCCcee--chhh--hcccCceeEEEEccCCCCCCc
Confidence            9999998855431  1111  113456889999888776544

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.66  E-value=0.00023  Score=68.25  Aligned_cols=101  Identities=29%  Similarity=0.358  Sum_probs=71.5

Q ss_pred             ccccCCCEEEEEec-CHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (328)
Q Consensus       160 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (328)
                      +.++.|+++.|+|. |.||+.+++.|+...| .+++.++|+... ......++       +     .....++++.+.++
T Consensus       150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~r-l~~La~el-------~-----~~~i~~l~~~l~~a  216 (340)
T PRK14982        150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQER-LQELQAEL-------G-----GGKILSLEEALPEA  216 (340)
T ss_pred             ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHH-HHHHHHHh-------c-----cccHHhHHHHHccC
Confidence            45799999999999 8999999999853456 489999987542 22211111       0     01234788999999


Q ss_pred             CEEEEcCCCChhhhc-cccHHHHhcCCCCcEEEEcCCCcccCH
Q 020301          238 DVISLHPVLDKTTYH-LINKERLATMKKEAILVNCSRGPVIDE  279 (328)
Q Consensus       238 DiV~l~~plt~~t~~-li~~~~~~~mk~ga~lIN~aRG~~vde  279 (328)
                      |+|+.+..   .+.. +++.+.+   +++.++|+.|+..=||.
T Consensus       217 DiVv~~ts---~~~~~~I~~~~l---~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        217 DIVVWVAS---MPKGVEIDPETL---KKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             CEEEECCc---CCcCCcCCHHHh---CCCeEEEEecCCCCCCc
Confidence            99886643   2234 3777654   79999999999877775

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=97.65  E-value=0.00039  Score=61.25  Aligned_cols=95  Identities=22%  Similarity=0.255  Sum_probs=65.8

Q ss_pred             cccccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc-cCC----HHH
Q 020301          159 VGNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASS----MDE  232 (328)
Q Consensus       159 ~~~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----l~e  232 (328)
                      .+.++.||++.|||-+. +|+.+|.+| ..-|+.|+.+|.+.-..            ...+........ ..+    +.+
T Consensus        56 ~~~~l~GK~vvVIGrS~iVGkPla~lL-~~~~AtVti~~~~~~~~------------~~~~~~~~hs~t~~~~~~~~l~~  122 (197)
T cd01079          56 YGNRLYGKTITIINRSEVVGRPLAALL-ANDGARVYSVDINGIQV------------FTRGESIRHEKHHVTDEEAMTLD  122 (197)
T ss_pred             cCCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEEecCcccc------------cccccccccccccccchhhHHHH
Confidence            36789999999999987 699999997 56799999997532110            000000000000 012    789


Q ss_pred             HhhcCCEEEEcCCCChhhhcc-ccHHHHhcCCCCcEEEEcCC
Q 020301          233 VLREADVISLHPVLDKTTYHL-INKERLATMKKEAILVNCSR  273 (328)
Q Consensus       233 ll~~aDiV~l~~plt~~t~~l-i~~~~~~~mk~ga~lIN~aR  273 (328)
                      .+++||+|+.+++-    .++ +..+.+   |+|+++||++-
T Consensus       123 ~~~~ADIVIsAvG~----~~~~i~~d~i---k~GavVIDVGi  157 (197)
T cd01079         123 CLSQSDVVITGVPS----PNYKVPTELL---KDGAICINFAS  157 (197)
T ss_pred             HhhhCCEEEEccCC----CCCccCHHHc---CCCcEEEEcCC
Confidence            99999999999983    344 777664   79999999973

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.63  E-value=0.00038  Score=66.48  Aligned_cols=96  Identities=16%  Similarity=0.160  Sum_probs=65.9

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      ..++++|||.|.+|+..++.++...+. +|.+|||++.. .+++.+.+    ....  ......+.++++++++||+|++
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~-a~~~~~~~----~~~~--~~~~~~~~~~~~~~~~aDiVi~  198 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEK-AYAFAQEI----QSKF--NTEIYVVNSADEAIEEADIIVT  198 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHH-HHHHHHHH----HHhc--CCcEEEeCCHHHHHhcCCEEEE
Confidence            467899999999999988775444565 78999998754 23333222    1110  1112235788999999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      +.|..   .-++.    +.+|+|+.++.++.
T Consensus       199 aT~s~---~p~i~----~~l~~G~hV~~iGs  222 (325)
T PRK08618        199 VTNAK---TPVFS----EKLKKGVHINAVGS  222 (325)
T ss_pred             ccCCC---CcchH----HhcCCCcEEEecCC
Confidence            98844   44554    45689999988854

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.63  E-value=0.00057  Score=63.96  Aligned_cols=119  Identities=16%  Similarity=0.178  Sum_probs=72.6

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl  246 (328)
                      +++|||.|.||..+|..|+ .-|.+|..++++.+. .+.... .+... ..+..........+.+++ +.+|+|++++|.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~-~~g~~V~~~~r~~~~-~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~-~~~d~vila~k~   76 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALA-QAGHDVTLVARRGAH-LDALNE-NGLRL-EDGEITVPVLAADDPAEL-GPQDLVILAVKA   76 (304)
T ss_pred             EEEEECCCHHHHHHHHHHH-hCCCeEEEEECChHH-HHHHHH-cCCcc-cCCceeecccCCCChhHc-CCCCEEEEeccc
Confidence            6999999999999999984 568999999986432 121111 01000 011100001123456665 899999999993


Q ss_pred             ChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccE
Q 020301          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (328)
Q Consensus       247 t~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g  293 (328)
                       .++..++ +.....+.+++.+|...-| +-.++.+.+.+....+.+
T Consensus        77 -~~~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~  120 (304)
T PRK06522         77 -YQLPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG  120 (304)
T ss_pred             -ccHHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE
Confidence             4555544 3344456677888888776 334566776666555543

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.63  E-value=0.00027  Score=65.99  Aligned_cols=118  Identities=17%  Similarity=0.186  Sum_probs=75.0

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .+.++++.|+|.|.+|+.+++.| ...| .+|++++|+.... ++..+.+..    ..  ....  ..++.+.+..+|+|
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL-~~~g~~~V~v~~R~~~~a-~~l~~~~~~----~~--~~~~--~~~~~~~~~~~Div  189 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPL-LDLGVAEITIVNRTVERA-EELAKLFGA----LG--KAEL--DLELQEELADFDLI  189 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHhhh----cc--ceee--cccchhccccCCEE
Confidence            57889999999999999999997 5889 7999999986532 222222210    00  0111  12445778899999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~  290 (328)
                      +.+.|.......-...-.++.++++++++++.=.+ ..+.=|.+|=+.|.
T Consensus       190 InaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P-~~T~ll~~A~~~G~  238 (278)
T PRK00258        190 INATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGP-LPTPFLAWAKAQGA  238 (278)
T ss_pred             EECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCC-CCCHHHHHHHHCcC
Confidence            99999654321111112235567889999996544 34544555555453

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.60  E-value=0.0011  Score=66.46  Aligned_cols=148  Identities=15%  Similarity=0.172  Sum_probs=88.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCC-------ccccccCCHHHHhhcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-------VTWKRASSMDEVLREA  237 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~ell~~a  237 (328)
                      .+|+|||+|.+|..+|-.|++ +.|.+|++||.++.. .+........ ..+.+...       ......++.++.++.|
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~-v~~l~~g~~~-~~e~gl~ell~~~~~~~l~~t~~~~~~i~~a   79 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPR-IDAWNSDQLP-IYEPGLDEVVKQCRGKNLFFSTDVEKHVAEA   79 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHH-HHHHHcCCCc-cCCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence            479999999999999998853 457999999987653 2221000000 00001000       0122234677889999


Q ss_pred             CEEEEcCCCChhh------------hccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEe-CCCCC
Q 020301          238 DVISLHPVLDKTT------------YHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD-VFEDE  302 (328)
Q Consensus       238 DiV~l~~plt~~t------------~~li--~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalD-V~~~E  302 (328)
                      |++++|+| ||..            ..+.  -+..-+.+++|.++|.-|.-.+=-.+.+.+.|.+.. .|.-.. +|.+|
T Consensus        80 dvi~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PE  157 (473)
T PLN02353         80 DIVFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPE  157 (473)
T ss_pred             CEEEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCC
Confidence            99999997 3321            1222  234556678999999988866655667777777521 121111 24566


Q ss_pred             CCCC----CCcccCCCeEE
Q 020301          303 PYMK----PGLSEMKNAIV  317 (328)
Q Consensus       303 P~~~----~~L~~~~nvil  317 (328)
                      =+.+    ..+...|.|++
T Consensus       158 rl~~G~a~~d~~~p~riVi  176 (473)
T PLN02353        158 FLAEGTAIEDLFKPDRVLI  176 (473)
T ss_pred             ccCCCCcccccCCCCEEEE
Confidence            5432    35777888874

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.60  E-value=0.00036  Score=67.07  Aligned_cols=107  Identities=19%  Similarity=0.323  Sum_probs=67.3

Q ss_pred             EEEEEecCHHHHHHHHHHHh-c------CCcEEEEEcCCc---hhHHHHHHhhhhhhhhcC----CC-CCccccccCCHH
Q 020301          167 TVGVIGAGRIGSAYARMMVE-G------FKMNLIYYDLYQ---ATRLEKFVTAYGQFLKAN----GE-QPVTWKRASSMD  231 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~-~------fg~~V~~~d~~~---~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~l~  231 (328)
                      +|+|||.|+.|.++|..++. +      |+.+|..|.+..   .....+...   ...+..    +. .+.......+++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in---~~~~n~~ylpgi~Lp~~i~at~dl~   77 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIIN---TTHENVKYLPGIKLPANLVAVPDLV   77 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHH---hcCCCccccCCCcCCCCeEEECCHH
Confidence            48999999999999998753 2      448999998732   111111111   100000    11 011122236899


Q ss_pred             HHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccC
Q 020301          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (328)
Q Consensus       232 ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vd  278 (328)
                      ++++.||+|++++| +...+.++ +..-..++++..+|+++-|=-.+
T Consensus        78 eal~~ADiIIlAVP-s~~i~~vl-~~l~~~l~~~~~iVs~tKGie~~  122 (342)
T TIGR03376        78 EAAKGADILVFVIP-HQFLEGIC-KQLKGHVKPNARAISCIKGLEVS  122 (342)
T ss_pred             HHHhcCCEEEEECC-hHHHHHHH-HHHHhhcCCCCEEEEEeCCcccC
Confidence            99999999999999 33344433 44445678899999999884443

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK06046 alanine dehydrogenase; Validated

Probab=97.56  E-value=0.00051  Score=65.62  Aligned_cols=94  Identities=20%  Similarity=0.294  Sum_probs=64.4

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      -+++||||.|.+|+..++.++...+. +|.+|||+.... +++.+.+.    +.  .+.....+.+++++++ +|+|++|
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~-~~~~~~~~----~~--~~~~v~~~~~~~~~l~-aDiVv~a  200 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSA-EKFVERMS----SV--VGCDVTVAEDIEEACD-CDILVTT  200 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHH-HHHHHHHH----hh--cCceEEEeCCHHHHhh-CCEEEEe
Confidence            36899999999999999987544565 577899987532 23322221    10  0111223568899997 9999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .|.   +.-+|..+.   +|+|+.+..++
T Consensus       201 Tps---~~P~~~~~~---l~~g~hV~~iG  223 (326)
T PRK06046        201 TPS---RKPVVKAEW---IKEGTHINAIG  223 (326)
T ss_pred             cCC---CCcEecHHH---cCCCCEEEecC
Confidence            884   346777765   48999988886

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.56  E-value=0.00078  Score=64.29  Aligned_cols=96  Identities=19%  Similarity=0.248  Sum_probs=71.0

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      -+++||||.|..++.-.+.+..-|+. +|.+|+|++... +++    ..+++..+..  ......+.+++++.||+|+.+
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~-e~~----a~~l~~~~~~--~v~a~~s~~~av~~aDiIvt~  202 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAA-EAF----AARLRKRGGE--AVGAADSAEEAVEGADIVVTA  202 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHH-HHH----HHHHHhhcCc--cceeccCHHHHhhcCCEEEEe
Confidence            45799999999999999987666776 699999997643 222    2223333322  123457899999999999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .|.++   -++..+.+   |||+.+..++-
T Consensus       203 T~s~~---Pil~~~~l---~~G~hI~aiGa  226 (330)
T COG2423         203 TPSTE---PVLKAEWL---KPGTHINAIGA  226 (330)
T ss_pred             cCCCC---CeecHhhc---CCCcEEEecCC
Confidence            88554   77877765   59999999973

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.55  E-value=0.0007  Score=64.69  Aligned_cols=96  Identities=13%  Similarity=0.124  Sum_probs=66.8

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      ..++++|||.|.+|+..++.++..++. +|.+|+|+..+ .+++.+.+.+   ..+   .......++++.+++||+|+.
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~-a~~~a~~~~~---~~g---~~v~~~~~~~~av~~aDiVvt  200 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAK-AEALALQLSS---LLG---IDVTAATDPRAAMSGADIIVT  200 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHH-HHHHHHHHHh---hcC---ceEEEeCCHHHHhccCCEEEE
Confidence            357899999999999999987435674 69999998754 2333222210   001   122234689999999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      +.|.   +.-+|..+.   +|+|+.+..++
T Consensus       201 aT~s---~~p~i~~~~---l~~g~~i~~vg  224 (326)
T TIGR02992       201 TTPS---ETPILHAEW---LEPGQHVTAMG  224 (326)
T ss_pred             ecCC---CCcEecHHH---cCCCcEEEeeC
Confidence            9874   346676654   57998888775

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.53  E-value=0.00044  Score=65.80  Aligned_cols=94  Identities=14%  Similarity=0.203  Sum_probs=67.6

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      -++++|||.|..++.-++.+...+.. +|.+|+|++... +.+.+    ++++.+   .......+.+++++.||+|+.+
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~~~~----~~~~~~---~~v~~~~~~~~av~~ADIV~ta  199 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETAL-EEYRQ----YAQALG---FAVNTTLDAAEVAHAANLIVTT  199 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHH----HHHhcC---CcEEEECCHHHHhcCCCEEEEe
Confidence            46899999999999999887544544 799999997543 22222    222222   1222346899999999999998


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .|   .+.-+|+.+.   +|||+.++.++
T Consensus       200 T~---s~~P~~~~~~---l~~G~hi~~iG  222 (315)
T PRK06823        200 TP---SREPLLQAED---IQPGTHITAVG  222 (315)
T ss_pred             cC---CCCceeCHHH---cCCCcEEEecC
Confidence            66   5567787765   57999999887

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=97.51  E-value=0.0004  Score=66.82  Aligned_cols=100  Identities=17%  Similarity=0.191  Sum_probs=70.0

Q ss_pred             HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccH
Q 020301          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (328)
Q Consensus       177 G~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~  256 (328)
                      |..+|..|+ .-|.+|++||++.....+...+.    +...|     .....+..+++++||+|++++|....++.++ +
T Consensus        32 G~~MA~~La-~aG~~V~v~Dr~~~~l~~~~~~~----l~~~G-----i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~  100 (342)
T PRK12557         32 GSRMAIEFA-EAGHDVVLAEPNRSILSEELWKK----VEDAG-----VKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-K  100 (342)
T ss_pred             HHHHHHHHH-hCCCeEEEEECCHHHhhHHHHHH----HHHCC-----CEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-H
Confidence            889999874 66899999999865211111111    11222     2223578888999999999999655477777 4


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCH-HHHHHHHH
Q 020301          257 ERLATMKKEAILVNCSRGPVIDE-VALVEHLK  287 (328)
Q Consensus       257 ~~~~~mk~ga~lIN~aRG~~vde-~aL~~aL~  287 (328)
                      .....+++|+++||++.+..... +.+.+.+.
T Consensus       101 ~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557        101 NILPHLPENAVICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             HHHhhCCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence            67788999999999999876554 56666664

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.47  E-value=0.00061  Score=66.09  Aligned_cols=111  Identities=21%  Similarity=0.343  Sum_probs=66.4

Q ss_pred             CEEEEEecCHHHHHHHHHHHhc------CCcEEEEEcCCchh---HHHHHHhhhhhhhh-cCC-CCCccccccCCHHHHh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEG------FKMNLIYYDLYQAT---RLEKFVTAYGQFLK-ANG-EQPVTWKRASSMDEVL  234 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~------fg~~V~~~d~~~~~---~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~ell  234 (328)
                      .+|+|||.|+.|.++|..++..      ||.+|..|.++..-   ...+.....+.-.. -.+ ..+.......++++++
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav   91 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV   91 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence            5899999999999999997533      45788888776531   00111110000000 000 1122222346889999


Q ss_pred             hcCCEEEEcCCCChhhhccccHHHHh--cCCCCcEEEEcCCCcccC
Q 020301          235 READVISLHPVLDKTTYHLINKERLA--TMKKEAILVNCSRGPVID  278 (328)
Q Consensus       235 ~~aDiV~l~~plt~~t~~li~~~~~~--~mk~ga~lIN~aRG~~vd  278 (328)
                      +.||+|++++| +...+.++ ++.-.  .+++++++|+++-|=-.+
T Consensus        92 ~~aDiIvlAVP-sq~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~  135 (365)
T PTZ00345         92 EDADLLIFVIP-HQFLESVL-SQIKENNNLKKHARAISLTKGIIVE  135 (365)
T ss_pred             hcCCEEEEEcC-hHHHHHHH-HHhccccccCCCCEEEEEeCCcccC
Confidence            99999999999 23344433 22223  466688999998774443

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.43  E-value=0.00072  Score=60.14  Aligned_cols=110  Identities=16%  Similarity=0.226  Sum_probs=71.0

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCC---chhHHHH-----H-----Hhhhhhhhhc-CCCCCccc-
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEK-----F-----VTAYGQFLKA-NGEQPVTW-  224 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~---~~~~~~~-----~-----~~~~~~~~~~-~~~~~~~~-  224 (328)
                      ..|..++|+|+|.|.+|..+|+.|+ ..|. +++.+|+.   .+.....     .     .+...+.+.+ ........ 
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~   95 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLA-RAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAY   95 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEe
Confidence            4688999999999999999999985 6788 69999987   2110000     0     0000000000 00000000 


Q ss_pred             ---cccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          225 ---KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       225 ---~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                         ....+++++++.+|+|+-| ..+++++.+++.+....++...++...+
T Consensus        96 ~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g  145 (200)
T TIGR02354        96 DEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASG  145 (200)
T ss_pred             eeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEec
Confidence               0113456788999999999 5788999999999999998777676433

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.43  E-value=0.00087  Score=63.36  Aligned_cols=95  Identities=16%  Similarity=0.188  Sum_probs=65.9

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      -+++||||.|..|+.-++.++.-+.. +|.+|+|++... +++.+.+    ++..  ......+.+.+++++.||+|+.+
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~f~~~~----~~~~--~~~v~~~~~~~eav~~aDIV~ta  189 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHA-RAFAERF----SKEF--GVDIRPVDNAEAALRDADTITSI  189 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHHH----HHhc--CCcEEEeCCHHHHHhcCCEEEEe
Confidence            46899999999999988877555555 699999997543 3333322    2211  11223357899999999999998


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .|   .+.-+|..+.+   |||+.+.-++
T Consensus       190 T~---s~~P~~~~~~l---~pg~hV~aiG  212 (301)
T PRK06407        190 TN---SDTPIFNRKYL---GDEYHVNLAG  212 (301)
T ss_pred             cC---CCCcEecHHHc---CCCceEEecC
Confidence            76   44577877654   6887766654

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.42  E-value=0.00092  Score=65.20  Aligned_cols=99  Identities=19%  Similarity=0.277  Sum_probs=68.7

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcC--CCCCccccccCCHHHHhhcCCEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKAN--GEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      -+++||||.|..++.-++.++.-+.  -+|.+|+|++... +++.+.+    .+.  +..  ....+.+.+++++.||+|
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a-~~f~~~~----~~~~~~~~--~v~~~~s~~eav~~ADIV  227 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSL-DSFATWV----AETYPQIT--NVEVVDSIEEVVRGSDIV  227 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHHH----HHhcCCCc--eEEEeCCHHHHHcCCCEE
Confidence            4689999999999999988754453  4899999997542 3333322    211  111  122357899999999999


Q ss_pred             EEcCCCCh---hhhccccHHHHhcCCCCcEEEEcCC
Q 020301          241 SLHPVLDK---TTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       241 ~l~~plt~---~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      +.+.+.+.   .+.-+|..+.   +|||+.++.++.
T Consensus       228 vtaT~s~~~~~s~~Pv~~~~~---lkpG~hv~~ig~  260 (379)
T PRK06199        228 TYCNSGETGDPSTYPYVKREW---VKPGAFLLMPAA  260 (379)
T ss_pred             EEccCCCCCCCCcCcEecHHH---cCCCcEEecCCc
Confidence            99987543   3457787765   479998877654

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.42  E-value=0.00077  Score=64.90  Aligned_cols=96  Identities=19%  Similarity=0.259  Sum_probs=65.9

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      -++++|||.|..++.-++.+..-+.. +|.+|+|++... +++.+.    ++..+   .....+.++++++++||+|+.+
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a-~~~~~~----~~~~~---~~v~~~~~~~~av~~ADIIvta  200 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAAT-AKLARN----LAGPG---LRIVACRSVAEAVEGADIITTV  200 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHH-HHHHHH----HHhcC---CcEEEeCCHHHHHhcCCEEEEe
Confidence            46899999999999988876555655 699999997542 233222    22211   2233357899999999999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .|. .++.-++..+.   +|||+.+.-++
T Consensus       201 T~S-~~~~Pvl~~~~---lkpG~hV~aIG  225 (346)
T PRK07589        201 TAD-KTNATILTDDM---VEPGMHINAVG  225 (346)
T ss_pred             cCC-CCCCceecHHH---cCCCcEEEecC
Confidence            873 23235666654   48999877654

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.40  E-value=0.00016  Score=57.35  Aligned_cols=88  Identities=23%  Similarity=0.215  Sum_probs=58.6

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      .++|+++.|||.|.+|.+-++.| ...|++|+++++.. ...++             .  ..+. ...+++.+..+|+|+
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~L-l~~gA~v~vis~~~-~~~~~-------------~--i~~~-~~~~~~~l~~~~lV~   65 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLL-LEAGAKVTVISPEI-EFSEG-------------L--IQLI-RREFEEDLDGADLVF   65 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHH-CCCTBEEEEEESSE-HHHHT-------------S--CEEE-ESS-GGGCTTESEEE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCch-hhhhh-------------H--HHHH-hhhHHHHHhhheEEE
Confidence            58999999999999999999997 68999999999985 11111             0  1111 124456688999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .+.+. ++    +|+......+.--+++|++
T Consensus        66 ~at~d-~~----~n~~i~~~a~~~~i~vn~~   91 (103)
T PF13241_consen   66 AATDD-PE----LNEAIYADARARGILVNVV   91 (103)
T ss_dssp             E-SS--HH----HHHHHHHHHHHTTSEEEET
T ss_pred             ecCCC-HH----HHHHHHHHHhhCCEEEEEC
Confidence            88762 22    4555666666566788875

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.40  E-value=0.0018  Score=58.80  Aligned_cols=117  Identities=18%  Similarity=0.234  Sum_probs=71.3

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCC----------chhHHHHHHhhhhhhhhcCCCCCccccccCCH
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY----------QATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (328)
                      .++.|+++.|.|+|++|+.+|+.| ..+|++|++...+          ......++.+.++.      ..........+.
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L-~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~------l~~~~~~~~~~~   99 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFL-HEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGS------VLGFPGAERITN   99 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCC------cccCCCceecCC
Confidence            468999999999999999999997 6899999955332          11111111111110      000000011122


Q ss_pred             HHH-hhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          231 DEV-LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       231 ~el-l~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      +++ -..||+++-|.+     .+.++.+...+++ =.+++-.+-+++-  ..-.+.|++..+.
T Consensus       100 ~~i~~~~~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~t--~~a~~~L~~rGi~  154 (227)
T cd01076         100 EELLELDCDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPTT--PEADEILHERGVL  154 (227)
T ss_pred             ccceeecccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCCC--HHHHHHHHHCCCE
Confidence            222 236899988865     6778888888887 4566677777763  4445666666554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.40  E-value=0.0005  Score=61.25  Aligned_cols=75  Identities=16%  Similarity=0.242  Sum_probs=51.1

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      -++.|+++.|||.|.+|...++.| ...|++|++++|...+...+..+        .+.  ..+....-.++.+..+|+|
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~L-l~~ga~V~VIs~~~~~~l~~l~~--------~~~--i~~~~~~~~~~~l~~adlV   74 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITL-LKYGAHIVVISPELTENLVKLVE--------EGK--IRWKQKEFEPSDIVDAFLV   74 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEcCCCCHHHHHHHh--------CCC--EEEEecCCChhhcCCceEE
Confidence            479999999999999999999987 57899999999876544333211        111  1111111113457889998


Q ss_pred             EEcCCC
Q 020301          241 SLHPVL  246 (328)
Q Consensus       241 ~l~~pl  246 (328)
                      +.+...
T Consensus        75 iaaT~d   80 (202)
T PRK06718         75 IAATND   80 (202)
T ss_pred             EEcCCC
Confidence            888763

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.39  E-value=0.0011  Score=63.53  Aligned_cols=95  Identities=15%  Similarity=0.149  Sum_probs=63.2

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      ..++++|||.|.+|+..+..++...+ -+|.+|+|+... .+++.+.+..   ..+   .......++++++++||+|+.
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~-a~~l~~~~~~---~~g---~~v~~~~d~~~al~~aDiVi~  203 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAK-AEAYAADLRA---ELG---IPVTVARDVHEAVAGADIIVT  203 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHHhh---ccC---ceEEEeCCHHHHHccCCEEEE
Confidence            35789999999999998887643455 479999998653 2333322210   011   122234689999999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~  271 (328)
                      +.|..   .-++..+.   +|+|+.+.-+
T Consensus       204 aT~s~---~p~i~~~~---l~~g~~v~~v  226 (330)
T PRK08291        204 TTPSE---EPILKAEW---LHPGLHVTAM  226 (330)
T ss_pred             eeCCC---CcEecHHH---cCCCceEEee
Confidence            98743   45666654   4677766654

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.38  E-value=0.0006  Score=60.90  Aligned_cols=94  Identities=20%  Similarity=0.279  Sum_probs=61.5

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcccc-ccCCHHHHhhcCCE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADV  239 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi  239 (328)
                      .++.|+++.|||.|.+|..-++.| ..+|++|.++++...+..++..+        .+.  ..+. .... .+.+..+|+
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~L-l~~ga~VtVvsp~~~~~l~~l~~--------~~~--i~~~~~~~~-~~dl~~~~l   72 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLL-LKAGAQLRVIAEELESELTLLAE--------QGG--ITWLARCFD-ADILEGAFL   72 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHH--------cCC--EEEEeCCCC-HHHhCCcEE
Confidence            468999999999999999999997 58999999999987654443211        111  1111 1112 345788999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~  271 (328)
                      |+.+... ++    +|.......+...++||+
T Consensus        73 Vi~at~d-~~----ln~~i~~~a~~~~ilvn~   99 (205)
T TIGR01470        73 VIAATDD-EE----LNRRVAHAARARGVPVNV   99 (205)
T ss_pred             EEECCCC-HH----HHHHHHHHHHHcCCEEEE
Confidence            8877553 32    344444445445566665

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.38  E-value=0.00064  Score=60.86  Aligned_cols=97  Identities=22%  Similarity=0.309  Sum_probs=63.2

Q ss_pred             EEEEEecCHHHHHHHHHHHhc-CCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          167 TVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~-fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      +|||||+|.||+.+.+.+..+ .+++ +.+||++.++..+. .            ...+.....+++|++++.|+++=|.
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~-~------------~~~~~~~~s~ide~~~~~DlvVEaA   68 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKEL-E------------ASVGRRCVSDIDELIAEVDLVVEAA   68 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHH-H------------hhcCCCccccHHHHhhccceeeeeC
Confidence            699999999999999986322 3354 77899987653221 0            0111223378999999999998776


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHH
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA  281 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~a  281 (328)
                      .  ++...-+   ..+.+|.|--+|=+|-|.+.|+.-
T Consensus        69 S--~~Av~e~---~~~~L~~g~d~iV~SVGALad~~l  100 (255)
T COG1712          69 S--PEAVREY---VPKILKAGIDVIVMSVGALADEGL  100 (255)
T ss_pred             C--HHHHHHH---hHHHHhcCCCEEEEechhccChHH
Confidence            5  4433323   334455665566666688887653

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.37  E-value=0.00058  Score=63.29  Aligned_cols=79  Identities=19%  Similarity=0.325  Sum_probs=64.4

Q ss_pred             ccccCCCEEEEEecCHH-HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          160 GNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      +.+++|+++.|||-++| |+.+|.+| ..-++.|.+++...                            .++.+..++||
T Consensus       151 ~i~l~Gk~~vVVGrS~iVGkPla~lL-~~~naTVtvcHs~T----------------------------~~l~~~~k~AD  201 (283)
T COG0190         151 GIDLRGKNVVVVGRSNIVGKPLALLL-LNANATVTVCHSRT----------------------------KDLASITKNAD  201 (283)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHH-HhCCCEEEEEcCCC----------------------------CCHHHHhhhCC
Confidence            35899999999999985 89999997 57899999886532                            47888999999


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      +|+.++-.    .++|..+.   .|+|+++|+++--
T Consensus       202 Ivv~AvG~----p~~i~~d~---vk~gavVIDVGin  230 (283)
T COG0190         202 IVVVAVGK----PHFIKADM---VKPGAVVIDVGIN  230 (283)
T ss_pred             EEEEecCC----cccccccc---ccCCCEEEecCCc
Confidence            99999763    46676544   5899999999743

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.36  E-value=0.001  Score=63.06  Aligned_cols=110  Identities=19%  Similarity=0.248  Sum_probs=71.1

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh-hhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      ++|+|+|.|.-|.++|+.|+ .-|-+|..|.+.++-..+ .... ........-..+.......+++++++.||+|++.+
T Consensus         2 ~kI~ViGaGswGTALA~~la-~ng~~V~lw~r~~~~~~~-i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~av   79 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLA-RNGHEVRLWGRDEEIVAE-INETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAV   79 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHH-hcCCeeEEEecCHHHHHH-HHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEEC
Confidence            57999999999999999985 667888888886542111 1000 00000001112333344578999999999999999


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCCCcccCH
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde  279 (328)
                      | +...+..+.. .-..+++++.+|+++-|=-.+.
T Consensus        80 P-s~~~r~v~~~-l~~~l~~~~~iv~~sKGie~~t  112 (329)
T COG0240          80 P-SQALREVLRQ-LKPLLLKDAIIVSATKGLEPET  112 (329)
T ss_pred             C-hHHHHHHHHH-HhhhccCCCeEEEEeccccCCC
Confidence            9 3444444322 2245689999999998755543

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.35  E-value=0.00082  Score=64.60  Aligned_cols=104  Identities=15%  Similarity=0.142  Sum_probs=64.6

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh--cCCC-CCccccccCCHHHHhhcCCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK--ANGE-QPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      .+++|||.|.+|..+|..|+ ..| .|..|.+++.. .+.... .+....  ..+. .+.......++++.++.+|+|++
T Consensus         8 mkI~IiGaGa~G~alA~~La-~~g-~v~l~~~~~~~-~~~i~~-~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVil   83 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICA-RRG-PTLQWVRSAET-ADDIND-NHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVM   83 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHH-HCC-CEEEEeCCHHH-HHHHHh-cCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEE
Confidence            57999999999999999975 556 67777765432 111110 000000  0011 01112233578888999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      ++| +..++..+ ++.-..++++..+|++.-|=
T Consensus        84 avp-s~~~~~vl-~~i~~~l~~~~~vIsl~kGi  114 (341)
T PRK12439         84 GVP-SHGFRGVL-TELAKELRPWVPVVSLVKGL  114 (341)
T ss_pred             EeC-HHHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence            999 44555544 33444567888899998864

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.33  E-value=0.00064  Score=55.31  Aligned_cols=96  Identities=16%  Similarity=0.281  Sum_probs=54.2

Q ss_pred             EEEEEe-cCHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       167 tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      +||||| .|.+|+.+.++|++...+++... ++..... ..+...|.   ...+........ .+.++ +..+|+|++|+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g-~~~~~~~~---~~~~~~~~~~~~-~~~~~-~~~~Dvvf~a~   74 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAG-KPLSEVFP---HPKGFEDLSVED-ADPEE-LSDVDVVFLAL   74 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTT-SBHHHTTG---GGTTTEEEBEEE-TSGHH-HTTESEEEE-S
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccC-Ceeehhcc---ccccccceeEee-cchhH-hhcCCEEEecC
Confidence            689999 99999999999877778886654 4433110 11111110   001111111111 23344 59999999999


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      |.  ++..-+....   .++|..+|+.+.
T Consensus        75 ~~--~~~~~~~~~~---~~~g~~ViD~s~   98 (121)
T PF01118_consen   75 PH--GASKELAPKL---LKAGIKVIDLSG   98 (121)
T ss_dssp             CH--HHHHHHHHHH---HHTTSEEEESSS
T ss_pred             ch--hHHHHHHHHH---hhCCcEEEeCCH
Confidence            83  2222122222   468889999874

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.30  E-value=0.0029  Score=57.00  Aligned_cols=115  Identities=18%  Similarity=0.278  Sum_probs=69.7

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCc---------hhHHHHHHhhhhhhhhcCCCCCccccccCCH
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQ---------ATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~-~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (328)
                      .++.|+++.|.|||++|+.+|+.| ...|.+|++ .|.+.         ....+ +....      .+..........+-
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L-~~~G~~vV~vsD~~g~i~~~Gld~~~l~~-~~~~~------~~~~~~~~~~~~~~   90 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKL-AEEGGKVLAVSDPDGYIYDPGITTEELIN-YAVAL------GGSARVKVQDYFPG   90 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEEcCCCcEECCCCCHHHHHH-HHHhh------CCccccCcccccCc
Confidence            468999999999999999999997 588887665 45443         01111 11111      11111000001122


Q ss_pred             HHHh-hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020301          231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (328)
Q Consensus       231 ~ell-~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i  291 (328)
                      ++++ ..||+++-|.+     .+.|+.+....++ =.+++--+-+++-+ + -.+.|++..+
T Consensus        91 ~~l~~~~~DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~-~-a~~~L~~~Gi  144 (217)
T cd05211          91 EAILGLDVDIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD-E-ALRILHERGI  144 (217)
T ss_pred             ccceeccccEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH-H-HHHHHHHCCc
Confidence            2322 37999998877     5588888888887 55677777887765 3 3455555443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.25  E-value=0.0015  Score=60.62  Aligned_cols=111  Identities=22%  Similarity=0.225  Sum_probs=70.7

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHH-HhhcCCEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVIS  241 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDiV~  241 (328)
                      ..+++++|+|.|.+|+.++..+ ...|++|.+++|+..+. ++..+.+    ...+.     ....++++ .+.++|+|+
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L-~~~g~~v~v~~R~~~~~-~~la~~~----~~~~~-----~~~~~~~~~~~~~~DivI  183 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPL-LKADCNVIIANRTVSKA-EELAERF----QRYGE-----IQAFSMDELPLHRVDLII  183 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHH----hhcCc-----eEEechhhhcccCccEEE
Confidence            4678999999999999999997 46789999999986432 2222221    11111     01123333 345899999


Q ss_pred             EcCCCCh--hhhc-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          242 LHPVLDK--TTYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       242 l~~plt~--~t~~-li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      .+.|..-  +... .++   ++.++++.+++++.-.+. ++ .|.++.++.
T Consensus       184 natp~gm~~~~~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~~  229 (270)
T TIGR00507       184 NATSAGMSGNIDEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKSL  229 (270)
T ss_pred             ECCCCCCCCCCCCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHHC
Confidence            9999742  2211 222   345789999999977654 44 455555543

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.25  E-value=0.0014  Score=64.18  Aligned_cols=99  Identities=22%  Similarity=0.254  Sum_probs=69.3

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      +|.++++.|||.|.||.-+|+.| ...| .+|++.+|+.... ++....+       +   .......++.+.+.++|+|
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L-~~~g~~~i~IaNRT~erA-~~La~~~-------~---~~~~~l~el~~~l~~~DvV  242 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHL-AEKGVKKITIANRTLERA-EELAKKL-------G---AEAVALEELLEALAEADVV  242 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHH-HhCCCCEEEEEcCCHHHH-HHHHHHh-------C---CeeecHHHHHHhhhhCCEE
Confidence            48999999999999999999998 4777 5799999987643 2222222       2   2223446777889999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCC---CCcEEEEcCCCc
Q 020301          241 SLHPVLDKTTYHLINKERLATMK---KEAILVNCSRGP  275 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk---~ga~lIN~aRG~  275 (328)
                      +.+.   .....++..+.+...-   ++-++|+.|=..
T Consensus       243 issT---sa~~~ii~~~~ve~a~~~r~~~livDiavPR  277 (414)
T COG0373         243 ISST---SAPHPIITREMVERALKIRKRLLIVDIAVPR  277 (414)
T ss_pred             EEec---CCCccccCHHHHHHHHhcccCeEEEEecCCC
Confidence            9884   3556677766655441   125788877433

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.24  E-value=0.0017  Score=61.82  Aligned_cols=104  Identities=25%  Similarity=0.332  Sum_probs=63.4

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh-cCCC-CCccccccCCHHHHh-hcCCEEEEc
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGE-QPVTWKRASSMDEVL-READVISLH  243 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~ell-~~aDiV~l~  243 (328)
                      +++|||.|.+|..+|..|+ ..|.+|..|+|+... .+..... +...+ -.+. .+.......++++.+ ..+|+|+++
T Consensus         2 kI~IiGaGa~G~ala~~L~-~~g~~V~l~~r~~~~-~~~i~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiia   78 (326)
T PRK14620          2 KISILGAGSFGTAIAIALS-SKKISVNLWGRNHTT-FESINTK-RKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILA   78 (326)
T ss_pred             EEEEECcCHHHHHHHHHHH-HCCCeEEEEecCHHH-HHHHHHc-CCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence            5999999999999999974 678999999997532 1111100 00000 0000 111112235677776 589999999


Q ss_pred             CCCChhhhccccHHHHh-cCCCCcEEEEcCCCc
Q 020301          244 PVLDKTTYHLINKERLA-TMKKEAILVNCSRGP  275 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~-~mk~ga~lIN~aRG~  275 (328)
                      +| +.++...+. +... .++++..+|...-|-
T Consensus        79 vk-s~~~~~~l~-~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         79 VP-TQQLRTICQ-QLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             eC-HHHHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence            99 345555443 2333 567777777776664

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.24  E-value=0.0017  Score=64.13  Aligned_cols=96  Identities=16%  Similarity=0.259  Sum_probs=65.7

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .+.|+++.|||.|.+|+.+|+.| ...|. ++++++|+... .+.+...|+       .  .......++.+++.+||+|
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L-~~~g~~~I~V~nRt~~r-a~~La~~~~-------~--~~~~~~~~l~~~l~~aDiV  246 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHV-TALAPKQIMLANRTIEK-AQKITSAFR-------N--ASAHYLSELPQLIKKADII  246 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEECCCHHH-HHHHHHHhc-------C--CeEecHHHHHHHhccCCEE
Confidence            47899999999999999999997 56785 79999998643 233333221       0  0112235667889999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      +.|.+   ....+|..+.+.  .+.-++|+.|=
T Consensus       247 I~aT~---a~~~vi~~~~~~--~~~~~~iDLav  274 (414)
T PRK13940        247 IAAVN---VLEYIVTCKYVG--DKPRVFIDISI  274 (414)
T ss_pred             EECcC---CCCeeECHHHhC--CCCeEEEEeCC
Confidence            99976   335556665543  23457777764

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.23  E-value=0.0021  Score=61.24  Aligned_cols=131  Identities=18%  Similarity=0.279  Sum_probs=73.5

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      +..++|+|||.|.+|..+|..++ ..| .++..||++.........+... .....+ .........+.+ .++.||+|+
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~-~~~~~~l~L~Di~~~~~~g~~lDl~~-~~~~~~-~~~~i~~~~d~~-~l~~ADiVV   78 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLIL-QKNLGDVVLYDVIKGVPQGKALDLKH-FSTLVG-SNINILGTNNYE-DIKDSDVVV   78 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHH-HCCCCeEEEEECCCccchhHHHHHhh-hccccC-CCeEEEeCCCHH-HhCCCCEEE
Confidence            35679999999999999999864 445 7899999976432111111100 000001 011112224666 679999999


Q ss_pred             EcC--CCCh-hhh--------cccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCccEEE--Ee
Q 020301          242 LHP--VLDK-TTY--------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG--LD  297 (328)
Q Consensus       242 l~~--plt~-~t~--------~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gaa--lD  297 (328)
                      ++.  |..+ .++        .++-  .+.+....|.+++||++--.=+-...+.+.-.  ..++.|.+  ||
T Consensus        79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld  151 (319)
T PTZ00117         79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD  151 (319)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence            998  5433 111        1110  22334446889999996543333444444332  35666665  55

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.23  E-value=0.0014  Score=65.00  Aligned_cols=120  Identities=10%  Similarity=0.073  Sum_probs=73.0

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEE-cC----------CchhHHHHHHhhhhhhhhcCCCCC-ccccccC
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DL----------YQATRLEKFVTAYGQFLKANGEQP-VTWKRAS  228 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~-d~----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  228 (328)
                      .++.|+||.|.|||++|+.+|+.| ..+|++|++. |.          ... .+.++.+.......  +... .+. ...
T Consensus       228 ~~l~g~rVaIqGfGnVG~~~A~~L-~~~GakVVavsDs~G~iyn~~GLD~~-~L~~~k~~~~~~l~--~~~~~~~~-~~i  302 (445)
T PRK09414        228 DSFEGKRVVVSGSGNVAIYAIEKA-QQLGAKVVTCSDSSGYVYDEEGIDLE-KLKEIKEVRRGRIS--EYAEEFGA-EYL  302 (445)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHH-HHHHHHHhcCCchh--hhhhhcCC-eec
Confidence            468999999999999999999997 6899999988 52          211 11111110000000  0000 000 112


Q ss_pred             CHHHHhh-cCCEEEEcCCCChhhhccccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          229 SMDEVLR-EADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       229 ~l~ell~-~aDiV~l~~plt~~t~~li~~~~~~~mk--~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      +.++++. .|||++-|..     .+.|+.+...+++  +=.+++-.|-|++ ..+ -.+.|.+..|.
T Consensus       303 ~~~~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI~  362 (445)
T PRK09414        303 EGGSPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGVL  362 (445)
T ss_pred             CCccccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCcE
Confidence            3444444 6999987765     7778888777773  2457778888887 433 44566665554

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.21  E-value=0.0017  Score=61.45  Aligned_cols=127  Identities=16%  Similarity=0.219  Sum_probs=74.0

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      ++|+|||.|.+|..+|..++ ..|. +|+.+|...........+.+.....  ...........++++ ++.||+|+++.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la-~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~--~~~~~~i~~t~d~~~-~~~aDiVIita   77 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLA-EKELADLVLLDVVEGIPQGKALDMYEASPV--GGFDTKVTGTNNYAD-TANSDIVVITA   77 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCCChhHHHHHhhhhhhhc--cCCCcEEEecCCHHH-hCCCCEEEEcC
Confidence            47999999999999999874 4443 8999999654322111121111000  000111222357777 79999999998


Q ss_pred             CCChhhhc------------ccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCccEEE--Ee
Q 020301          245 VLDKTTYH------------LIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG--LD  297 (328)
Q Consensus       245 plt~~t~~------------li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~a--L~~g~i~gaa--lD  297 (328)
                      +. |...+            ++-  .+.+....+++++|+++-.-=+-...+.+.  +...++.|.+  ||
T Consensus        78 g~-p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        78 GL-PRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             CC-CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            83 32221            221  122334457899999976443444455555  5555677775  66

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.21  E-value=0.0012  Score=62.93  Aligned_cols=87  Identities=16%  Similarity=0.183  Sum_probs=57.9

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      -++||||+|+||+.+++.+.+.=++++.+ +|++......+            .   .+.....+.++++.+.|+|++|.
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~------------~---~~v~~~~d~~e~l~~iDVViIct   68 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT------------E---TPVYAVADDEKHLDDVDVLILCM   68 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh------------c---CCccccCCHHHhccCCCEEEEcC
Confidence            58999999999999999874334899876 68875222111            0   11112346777889999999999


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      |....     -......++.|.-+|+..
T Consensus        69 Ps~th-----~~~~~~~L~aG~NVV~s~   91 (324)
T TIGR01921        69 GSATD-----IPEQAPYFAQFANTVDSF   91 (324)
T ss_pred             CCccC-----HHHHHHHHHcCCCEEECC
Confidence            84322     244445566777777774

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.21  E-value=0.0023  Score=59.11  Aligned_cols=103  Identities=14%  Similarity=0.155  Sum_probs=63.9

Q ss_pred             CEEEEEecCHHHHHHHHHHHhc--CCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH-hhcCCEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEG--FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~--fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV~  241 (328)
                      .+|||||+|.||+.+++.+.++  .++++. +|++.... .++..          +.    ...+.+++++ ....|+|+
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~-~~~~~----------~~----~~~~~~l~~ll~~~~DlVV   67 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADL-PPALA----------GR----VALLDGLPGLLAWRPDLVV   67 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHH-HHHhh----------cc----CcccCCHHHHhhcCCCEEE
Confidence            5899999999999999987432  235544 45655422 11110          00    2235689997 58899999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHc
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID---EVALVEHLKQ  288 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vd---e~aL~~aL~~  288 (328)
                      =|..  ++...-.....   ++.|.-++=.|=|.+-|   ++.|.++.++
T Consensus        68 E~A~--~~av~e~~~~i---L~~g~dlvv~SvGALaD~~~~~~l~~~A~~  112 (267)
T PRK13301         68 EAAG--QQAIAEHAEGC---LTAGLDMIICSAGALADDALRARLIAAAEA  112 (267)
T ss_pred             ECCC--HHHHHHHHHHH---HhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence            8876  33322233333   44666777777788887   3455555554

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=97.19  E-value=0.0012  Score=60.97  Aligned_cols=127  Identities=19%  Similarity=0.113  Sum_probs=70.2

Q ss_pred             HHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHH
Q 020301          180 YARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (328)
Q Consensus       180 vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~  258 (328)
                      +|+.|. +++..+|++||+++......         +..|....   ...+ .+.++++|+|++|+|. ..+..++ ++.
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a---------~~~g~~~~---~~~~-~~~~~~~DlvvlavP~-~~~~~~l-~~~   65 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAA---------LELGIIDE---ASTD-IEAVEDADLVVLAVPV-SAIEDVL-EEI   65 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHH---------HHTTSSSE---EESH-HHHGGCCSEEEE-S-H-HHHHHHH-HHH
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHH---------HHCCCeee---ccCC-HhHhcCCCEEEEcCCH-HHHHHHH-HHh
Confidence            345542 24558999999987653221         12233221   1223 5678999999999993 3445544 556


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEE-eCCCCCCC-C---CCCcccCCCeEEcCCCC
Q 020301          259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL-DVFEDEPY-M---KPGLSEMKNAIVVPHIA  322 (328)
Q Consensus       259 ~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaal-DV~~~EP~-~---~~~L~~~~nvilTPHia  322 (328)
                      -..+++|+++++++.-..--.+++.+.+..+ ....+. =-|-+|-. +   ...|++-.++++||+-.
T Consensus        66 ~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~-~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~  133 (258)
T PF02153_consen   66 APYLKPGAIVTDVGSVKAPIVEAMERLLPEG-VRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED  133 (258)
T ss_dssp             HCGS-TTSEEEE--S-CHHHHHHHHHHHTSS-GEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred             hhhcCCCcEEEEeCCCCHHHHHHHHHhcCcc-cceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence            6679999999999876644445555555522 122221 12222211 1   23688889999999865

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.18  E-value=0.0016  Score=61.70  Aligned_cols=121  Identities=16%  Similarity=0.160  Sum_probs=73.9

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhc-CCCCCc-cccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPV-TWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .+++|||.|.||..+|.+| ...|.+|.++.|.......    ..+-.... .+.... ......+.+ .+..+|+|+++
T Consensus         6 m~I~IiG~GaiG~~lA~~L-~~~g~~V~~~~r~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vila   79 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAML-ARAGFDVHFLLRSDYEAVR----ENGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLVG   79 (313)
T ss_pred             cEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCHHHHH----hCCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEEE
Confidence            5799999999999999998 4679999999887532211    11101100 010000 001112333 46789999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEE
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG  295 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaa  295 (328)
                      ++.. ++...+ +..-...+++++++...-| +-.++.|.+.+...++.++.
T Consensus        80 vK~~-~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~  128 (313)
T PRK06249         80 LKTT-ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL  128 (313)
T ss_pred             ecCC-ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence            9943 444333 3333446778888887666 45677788888766666553

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.16  E-value=0.0017  Score=62.22  Aligned_cols=96  Identities=16%  Similarity=0.105  Sum_probs=63.0

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ++.|+++.|||.|.||+.+|+.| ..-| .+|++.+|+...  ..    |+.             .....-+.+.++|+|
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L-~~~g~~~i~v~nRt~~~--~~----~~~-------------~~~~~~~~~~~~DvV  230 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYL-QRQGYSRITFCSRQQLT--LP----YRT-------------VVREELSFQDPYDVI  230 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHH-HHcCCCEEEEEcCCccc--cc----hhh-------------hhhhhhhcccCCCEE
Confidence            58899999999999999999998 5677 469999998642  11    100             000111445789999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vd  278 (328)
                      +.+-..|....-++..+.++..++ -++|+.|=..=||
T Consensus       231 Is~t~~Tas~~p~i~~~~~~~~~~-r~~iDLAvPRdId  267 (338)
T PRK00676        231 FFGSSESAYAFPHLSWESLADIPD-RIVFDFNVPRTFP  267 (338)
T ss_pred             EEcCCcCCCCCceeeHHHHhhccC-cEEEEecCCCCCc
Confidence            987433344445566666665443 3888887544343

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.14  E-value=0.0028  Score=59.40  Aligned_cols=117  Identities=14%  Similarity=0.086  Sum_probs=72.7

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .+.++++.|+|.|..|++++..| ...|+ +|+++||+..+ .+...+.+..    .. .........++.+.++.+|+|
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL-~~~G~~~I~I~nR~~~k-a~~la~~l~~----~~-~~~~~~~~~~~~~~~~~aDiV  196 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHAL-LTLGVERLTIFDVDPAR-AAALADELNA----RF-PAARATAGSDLAAALAAADGL  196 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEECCCHHH-HHHHHHHHHh----hC-CCeEEEeccchHhhhCCCCEE
Confidence            45679999999999999999997 47887 79999998643 2232222210    00 001111224566678899999


Q ss_pred             EEcCCCChhh--hccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          241 SLHPVLDKTT--YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       241 ~l~~plt~~t--~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      +.+.|..-..  ...++.   +.++++.+++|+.=.+ .++.-|.+|=+.|
T Consensus       197 InaTp~Gm~~~~~~~~~~---~~l~~~~~v~DivY~P-~~T~ll~~A~~~G  243 (284)
T PRK12549        197 VHATPTGMAKHPGLPLPA---ELLRPGLWVADIVYFP-LETELLRAARALG  243 (284)
T ss_pred             EECCcCCCCCCCCCCCCH---HHcCCCcEEEEeeeCC-CCCHHHHHHHHCC
Confidence            9998864211  112333   3466778888886544 3455555555545

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.13  E-value=0.002  Score=60.48  Aligned_cols=124  Identities=13%  Similarity=0.146  Sum_probs=68.8

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCch--hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      .+.|+++.|+|.|-+|++++..| ...|++ |.+++|+..  .+.++..+.+..................++++.+..+|
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~L-a~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~D  201 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQC-ALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSD  201 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCC
Confidence            46789999999999999999987 478986 999999852  22222222211000000000000111123455677899


Q ss_pred             EEEEcCCCChh--hhc-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          239 VISLHPVLDKT--TYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       239 iV~l~~plt~~--t~~-li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      +|+.+.|..-.  +.. .+.  ....++++.+++++.=.+ .++.-|..|=+.|
T Consensus       202 ilINaTp~Gm~~~~~~~~~~--~~~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G  252 (289)
T PRK12548        202 ILVNATLVGMKPNDGETNIK--DTSVFRKDLVVADTVYNP-KKTKLLEDAEAAG  252 (289)
T ss_pred             EEEEeCCCCCCCCCCCCCCC--cHHhcCCCCEEEEecCCC-CCCHHHHHHHHCC
Confidence            99999985421  111 110  123456677777775433 2444444444444

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.13  E-value=0.0063  Score=64.15  Aligned_cols=130  Identities=15%  Similarity=0.181  Sum_probs=87.6

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHh-hhhhhhhcCCC-CC-------ccccccCCHHHHh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT-AYGQFLKANGE-QP-------VTWKRASSMDEVL  234 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~~-~~~~~~~~~~~-~~-------~~~~~~~~l~ell  234 (328)
                      ++|+|||.|.||..+|..++...|++|..||+++.....  .... .+.. ..+.+. .+       ......+++ +.+
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~~~-~~~  387 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDK-KVKRRHLKPSERDKQMALISGTTDY-RGF  387 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHhcEEEeCCh-HHh
Confidence            689999999999999998743669999999998653211  1111 1111 111111 10       012223456 457


Q ss_pred             hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCC
Q 020301          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (328)
Q Consensus       235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~  300 (328)
                      +.||+|+=++|-+.+.+.-+-++.=+.++|+++|...+.+  +....|.+.++. .=.-.++--|.
T Consensus       388 ~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hff~  450 (708)
T PRK11154        388 KHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAAR-PEQVIGLHYFS  450 (708)
T ss_pred             ccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCc-ccceEEEecCC
Confidence            9999999999988888887777777889999999766543  667778887754 33456666664

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.12  E-value=0.0074  Score=63.53  Aligned_cols=131  Identities=14%  Similarity=0.198  Sum_probs=86.3

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHH-hhhhhhhhcCCCC-C-------ccccccCCHHHHh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFV-TAYGQFLKANGEQ-P-------VTWKRASSMDEVL  234 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~-~~~~~~~~~~~~~-~-------~~~~~~~~l~ell  234 (328)
                      ++|+|||.|.||..+|..++...|++|+.||++++....  ... +.+.. ..+.+.. +       ......++++ .+
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~~~~-~~  382 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDK-GVKRRHMTPAERDNQMALITGTTDYR-GF  382 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHcCeEEeCChH-Hh
Confidence            579999999999999998643469999999998753211  111 11111 1111111 0       1112235664 57


Q ss_pred             hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCC
Q 020301          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (328)
Q Consensus       235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~  301 (328)
                      +.||+|+=++|-..+.+.-+-++.=+.++++++|...+.+  +....|.++++. .=.-.++--|.+
T Consensus       383 ~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~HffnP  446 (699)
T TIGR02440       383 KDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYFSP  446 (699)
T ss_pred             ccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecCCc
Confidence            9999999999998888887777777888999888755443  566777777754 334566666643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.09  E-value=0.0013  Score=60.89  Aligned_cols=128  Identities=17%  Similarity=0.262  Sum_probs=73.7

Q ss_pred             EEEEec-CHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          168 VGVIGA-GRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       168 vgIiG~-G~IG~~vA~~l~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      ++|||. |.+|..+|..++ ..|    -+|..||...+.. +............ . ........+++++.++.||+|++
T Consensus         1 I~IIGagG~vG~~ia~~l~-~~~~~~~~el~L~D~~~~~l-~~~~~dl~~~~~~-~-~~~~i~~~~d~~~~~~~aDiVv~   76 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLA-DGSVLLAIELVLYDIDEEKL-KGVAMDLQDAVEP-L-ADIKVSITDDPYEAFKDADVVII   76 (263)
T ss_pred             CEEECCCChHHHHHHHHHH-hCCCCcceEEEEEeCCcccc-hHHHHHHHHhhhh-c-cCcEEEECCchHHHhCCCCEEEE
Confidence            589999 999999999864 445    6899999876432 1111111111111 0 11222234567889999999999


Q ss_pred             cCCC--Ch---------hhhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCccEEE-EeCC
Q 020301          243 HPVL--DK---------TTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG-LDVF  299 (328)
Q Consensus       243 ~~pl--t~---------~t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~a--L~~g~i~gaa-lDV~  299 (328)
                      +.-.  .+         ++..++.  .+.+++..|++++||.+-.-=+-...+.+.  +...++.|.+ +|..
T Consensus        77 t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~  149 (263)
T cd00650          77 TAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPI  149 (263)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence            6521  11         1111121  123334458999999963222333345445  4567788888 7753

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.08  E-value=0.0067  Score=58.60  Aligned_cols=127  Identities=19%  Similarity=0.261  Sum_probs=93.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH---hhcCCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDiV~l  242 (328)
                      ..+|+||+|.||+.+|..+ ..-|.+|.+|+|+..+. +++.++.       +. ........+++|+   |+.=--|.+
T Consensus         4 ~~iGviGLaVMG~NLaLNi-~~~G~~VavyNRt~~kt-d~f~~~~-------~~-~k~i~~~~sieefV~~Le~PRkI~l   73 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNI-ADHGYTVAVYNRTTEKT-DEFLAER-------AK-GKNIVPAYSIEEFVASLEKPRKILL   73 (473)
T ss_pred             cceeeEehhhhhHHHHHHH-HhcCceEEEEeCCHHHH-HHHHHhC-------cc-CCCccccCcHHHHHHHhcCCceEEE
Confidence            4599999999999999997 58899999999998654 3343321       10 1122334577765   555666666


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP  303 (328)
                      .+-...-... +-++.+..|-+|=++|+-+-..--|+.--.++|.+..|...+.-|.-.|-
T Consensus        74 MVkAG~~VD~-~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEe  133 (473)
T COG0362          74 MVKAGTPVDA-VIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEE  133 (473)
T ss_pred             EEecCCcHHH-HHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccc
Confidence            6654321122 23677888999999999998888899999999999999999999998874

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=97.07  E-value=0.0058  Score=64.62  Aligned_cols=130  Identities=17%  Similarity=0.187  Sum_probs=88.1

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHh-hhhhhhhcCCCCC--------ccccccCCHHHHh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT-AYGQFLKANGEQP--------VTWKRASSMDEVL  234 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~~-~~~~~~~~~~~~~--------~~~~~~~~l~ell  234 (328)
                      ++|+|||.|.||..+|..++ ..|++|..||+++.....  +... .+.. ..+.+...        .......+++ .+
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~-~~~~g~~~~~~~~~~~~~i~~~~~~~-~~  412 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSV-DKGLKTVLKDATPAGLDRGQQQVFKGLNK-KVKRKKITSLERDSILSNLTPTLDYS-GF  412 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHH-hCCCcEEEecCCHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHhCeEEeCCHH-Hh
Confidence            57999999999999999975 569999999998754211  1111 1111 11112110        1112234665 46


Q ss_pred             hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCC
Q 020301          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (328)
Q Consensus       235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~  301 (328)
                      +.||+|+=++|-+.+.+.-+-++.=+.++++++|...+.  -++-..|.++++. .=.-.++..|.+
T Consensus       413 ~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTS--sl~i~~la~~~~~-p~r~ig~Hff~P  476 (737)
T TIGR02441       413 KNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTS--ALPIKDIAAVSSR-PEKVIGMHYFSP  476 (737)
T ss_pred             ccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCC--CCCHHHHHhhcCC-ccceEEEeccCC
Confidence            999999999998888888887877788999998864433  3677788888765 345677777753

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.99  E-value=0.0042  Score=49.76  Aligned_cols=107  Identities=25%  Similarity=0.353  Sum_probs=64.2

Q ss_pred             EEEEEecCHHHHHHHHHHHhc-CCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEEE
Q 020301          167 TVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (328)
                      ++||||+|.+|+...+.+.+. -++++. ++|+++... +...+.|       +     ...+.+++++++  ..|+|++
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~-~~~~~~~-------~-----~~~~~~~~~ll~~~~~D~V~I   68 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERA-EAFAEKY-------G-----IPVYTDLEELLADEDVDAVII   68 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHH-HHHHHHT-------T-----SEEESSHHHHHHHTTESEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHH-HHHHHHh-------c-----ccchhHHHHHHHhhcCCEEEE
Confidence            699999999999998776433 467765 678876432 2222222       2     224689999998  7899999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEc-CCCcccCHHHHHHHHHcCC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVIDEVALVEHLKQNP  290 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~-aRG~~vde~aL~~aL~~g~  290 (328)
                      +.|.  .++.-+-...+++=+  .+++.- ---.+-+.+.|.++.++.+
T Consensus        69 ~tp~--~~h~~~~~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~  113 (120)
T PF01408_consen   69 ATPP--SSHAEIAKKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKG  113 (120)
T ss_dssp             ESSG--GGHHHHHHHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred             ecCC--cchHHHHHHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence            9993  333323333333222  444443 1123334556666655543

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=96.99  E-value=0.0039  Score=65.78  Aligned_cols=130  Identities=18%  Similarity=0.198  Sum_probs=87.6

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHH-hhhhhhhhcCCCCC--------ccccccCCHHHHh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFV-TAYGQFLKANGEQP--------VTWKRASSMDEVL  234 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~-~~~~~~~~~~~~~~--------~~~~~~~~l~ell  234 (328)
                      ++|+|||.|.||..+|..++ ..|.+|+.||++......  +.. ..+.. ..+.+...        .......++++ +
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~-~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  390 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSA-SKGVPVIMKDINQKALDLGMTEAAKLLNK-QVERGKIDGAKMAGVLSSIRPTLDYAG-F  390 (715)
T ss_pred             ceEEEECCchhHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCChhhHHHHHhCeEEeCCHHH-h
Confidence            68999999999999999975 669999999998754211  111 11111 11112110        01122346644 6


Q ss_pred             hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCC
Q 020301          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (328)
Q Consensus       235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~  301 (328)
                      +.||+|+=++|-..+.+.-+-.+.=+.++++++|...+.+  +....|.++++. .=.-.++-.|.+
T Consensus       391 ~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff~P  454 (715)
T PRK11730        391 ERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFFNP  454 (715)
T ss_pred             cCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecCCc
Confidence            9999999999998898888878877889999988765443  566777787764 334566666643

>PLN02477 glutamate dehydrogenase

Probab=96.96  E-value=0.006  Score=59.99  Aligned_cols=116  Identities=24%  Similarity=0.294  Sum_probs=72.9

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCC-------c--hhHHHHHHhhhhhhhhcCCCCCc-cccccCC
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLY-------Q--ATRLEKFVTAYGQFLKANGEQPV-TWKRASS  229 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~-~d~~-------~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  229 (328)
                      .++.|+|+.|.|||++|+.+|+.| ...|++|++ .|.+       -  ...+.++.+..+      ..... +... .+
T Consensus       202 ~~l~g~~VaIqGfGnVG~~~A~~L-~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g------~l~~~~~a~~-i~  273 (410)
T PLN02477        202 KSIAGQTFVIQGFGNVGSWAAQLI-HEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGG------GLKGFPGGDP-ID  273 (410)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcC------chhccccceE-ec
Confidence            478999999999999999999997 688999994 4543       0  111111111000      00000 1111 12


Q ss_pred             HHH-HhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          230 MDE-VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       230 l~e-ll~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      .++ +...||+++-|.     ..+.|+++...++| =.+++-.|-+++ ..+ -.+.|++..|.
T Consensus       274 ~~e~l~~~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~  329 (410)
T PLN02477        274 PDDILVEPCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVV  329 (410)
T ss_pred             CccceeccccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcE
Confidence            233 345799997663     46789999888886 567888888988 433 34777776554

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=96.94  E-value=0.11  Score=49.81  Aligned_cols=106  Identities=12%  Similarity=0.151  Sum_probs=65.9

Q ss_pred             ccCCCEEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       162 ~l~g~tvgIiG~G--~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      .+.|++|++||=+  ++.++++..+ ..||++|.+..|..-...+...+.-.+.++..|.   ......++++.+++||+
T Consensus       153 ~l~gl~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~---~~~~~~d~~~a~~~aDv  228 (334)
T PRK01713        153 PLSEISYVYIGDARNNMGNSLLLIG-AKLGMDVRICAPKALLPEASLVEMCEKFAKESGA---RITVTDDIDKAVKGVDF  228 (334)
T ss_pred             CcCCcEEEEECCCccCHHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCC---eEEEEcCHHHHhCCCCE
Confidence            4789999999986  5788888876 5899999999875321111111000000111121   22345799999999999


Q ss_pred             EEEcC----CCCh---hh------hccccHHHHhcC-CCCcEEEEc
Q 020301          240 ISLHP----VLDK---TT------YHLINKERLATM-KKEAILVNC  271 (328)
Q Consensus       240 V~l~~----plt~---~t------~~li~~~~~~~m-k~ga~lIN~  271 (328)
                      |..-.    ....   +.      .-.++++.++.. |+++++.-+
T Consensus       229 Vyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~  274 (334)
T PRK01713        229 VHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHC  274 (334)
T ss_pred             EEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECC
Confidence            97632    1100   11      123688888886 788888766

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=96.93  E-value=0.13  Score=48.78  Aligned_cols=105  Identities=21%  Similarity=0.235  Sum_probs=67.1

Q ss_pred             cCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       163 l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      +.|.+|+++|= +++.++++..+ ..||++|.+..|..-...+...+.-.....+.|   .......++++.+++||+|.
T Consensus       146 l~g~~v~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDvvy  221 (304)
T TIGR00658       146 LKGVKVVYVGDGNNVCNSLMLAG-AKLGMDVVVATPEGYEPDADIVKKAQEIAKENG---GSVELTHDPVEAVKGADVIY  221 (304)
T ss_pred             CCCcEEEEEeCCCchHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEE
Confidence            78999999997 68888888886 689999999987542211111110000011112   11233479999999999997


Q ss_pred             EcC-C-CCh-----h-----hhccccHHHHhcCCCCcEEEEc
Q 020301          242 LHP-V-LDK-----T-----TYHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       242 l~~-p-lt~-----~-----t~~li~~~~~~~mk~ga~lIN~  271 (328)
                      .-. . ...     +     ..-.++++.++.+|+++++.=+
T Consensus       222 ~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp  263 (304)
T TIGR00658       222 TDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC  263 (304)
T ss_pred             EcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC
Confidence            642 1 111     1     1235788999999999888766

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=96.91  E-value=0.0048  Score=56.80  Aligned_cols=119  Identities=14%  Similarity=0.135  Sum_probs=72.6

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEE-c-------CCch--hHHHHHHhhhhhhhhcCCC--CCc-----c
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-D-------LYQA--TRLEKFVTAYGQFLKANGE--QPV-----T  223 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~-d-------~~~~--~~~~~~~~~~~~~~~~~~~--~~~-----~  223 (328)
                      .++.|+|+.|-|||++|+.+|+.| ..+|++|++. |       +.--  +.+....+ +   -...+.  ...     +
T Consensus        34 ~~l~g~~vaIqGfGnVG~~~a~~L-~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~-~---~~~~~~~v~~~~~~~~~  108 (254)
T cd05313          34 ETLKGKRVAISGSGNVAQYAAEKL-LELGAKVVTLSDSKGYVYDPDGFTGEKLAELKE-I---KEVRRGRVSEYAKKYGT  108 (254)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCceEECCCCCCHHHHHHHHH-H---HHhcCCcHHHHhhcCCC
Confidence            578999999999999999999997 6899999944 3       2100  01100000 0   000010  000     0


Q ss_pred             ccccCCHHHH-hhcCCEEEEcCCCChhhhccccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          224 WKRASSMDEV-LREADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       224 ~~~~~~l~el-l~~aDiV~l~~plt~~t~~li~~~~~~~mk--~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      ... .+.+++ -..||+++-|     .+.+.|+++..++++  +=.+++-.+-|++-+  +-.+.|.+..|.
T Consensus       109 a~~-~~~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~  172 (254)
T cd05313         109 AKY-FEGKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL  172 (254)
T ss_pred             CEE-eCCcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            111 233333 3469999877     468899999888884  345777788888755  344566665554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.91  E-value=0.0048  Score=59.72  Aligned_cols=143  Identities=21%  Similarity=0.251  Sum_probs=87.5

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHH--hhhh---------hhhhcCCCCCccccccCCHHHHh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV--TAYG---------QFLKANGEQPVTWKRASSMDEVL  234 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~~~l~ell  234 (328)
                      .++||||+|-||..+|-.++ .-|.+|+++|.++..-. ..-  ..|-         ....+.|    .....++.++ +
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA-~~G~~ViG~DIn~~~Vd-~ln~G~~~i~e~~~~~~v~~~v~~g----~lraTtd~~~-l   82 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFA-SAGFKVIGVDINQKKVD-KLNRGESYIEEPDLDEVVKEAVESG----KLRATTDPEE-L   82 (436)
T ss_pred             eEEEEEccccccHHHHHHHH-HcCCceEeEeCCHHHHH-HHhCCcceeecCcHHHHHHHHHhcC----CceEecChhh-c
Confidence            78999999999999999985 67999999999875321 100  0000         0000111    1111234444 5


Q ss_pred             hcCCEEEEcCCCChhhhc-------ccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC-CccEEEEeCC---CC
Q 020301          235 READVISLHPVLDKTTYH-------LIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN-PMFRVGLDVF---ED  301 (328)
Q Consensus       235 ~~aDiV~l~~plt~~t~~-------li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g-~i~gaalDV~---~~  301 (328)
                      +.||++.+|+| ||-+.+       +.+  +..-.-||+|..+|==|.-..=-++.++..|.+. .=...+-|+|   .+
T Consensus        83 ~~~dv~iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysP  161 (436)
T COG0677          83 KECDVFIICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSP  161 (436)
T ss_pred             ccCCEEEEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCc
Confidence            69999999999 564442       111  3345668999999988887777788888887764 1122335643   45


Q ss_pred             CCC-CCC---CcccCCCeE
Q 020301          302 EPY-MKP---GLSEMKNAI  316 (328)
Q Consensus       302 EP~-~~~---~L~~~~nvi  316 (328)
                      |-. |.+   .+.+.|.||
T Consensus       162 ERv~PG~~~~el~~~~kVI  180 (436)
T COG0677         162 ERVLPGNVLKELVNNPKVI  180 (436)
T ss_pred             cccCCCchhhhhhcCCcee
Confidence            532 222   355566665

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=96.90  E-value=0.0014  Score=62.84  Aligned_cols=67  Identities=19%  Similarity=0.336  Sum_probs=46.8

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      ++||||||-|..|+.++.. ++.+|.+|++.|+.+........+        ... .........+.++.+.||+|+
T Consensus         1 ~~tvgIlGGGQLgrMm~~a-a~~lG~~v~vLdp~~~~PA~~va~--------~~i-~~~~dD~~al~ela~~~DViT   67 (375)
T COG0026           1 MKTVGILGGGQLGRMMALA-AARLGIKVIVLDPDADAPAAQVAD--------RVI-VAAYDDPEALRELAAKCDVIT   67 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHH-HHhcCCEEEEecCCCCCchhhccc--------cee-ecCCCCHHHHHHHHhhCCEEE
Confidence            4799999999999999998 589999999999987653221100        000 000011235789999999995

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=96.89  E-value=0.13  Score=49.20  Aligned_cols=106  Identities=18%  Similarity=0.232  Sum_probs=65.9

Q ss_pred             ccCCCEEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       162 ~l~g~tvgIiG~G--~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      .+.|+||++||-+  ++.++++..+ ..||++|.+..|..-...++..+..-..++..|.   ......++++++++||+
T Consensus       152 ~l~g~~va~vGd~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~---~~~~~~d~~ea~~~aDv  227 (331)
T PRK02102        152 PLKGLKLAYVGDGRNNMANSLMVGG-AKLGMDVRICAPKELWPEEELVALAREIAKETGA---KITITEDPEEAVKGADV  227 (331)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHH-HHcCCEEEEECCcccccCHHHHHHHHHHHHHcCC---eEEEEcCHHHHhCCCCE
Confidence            3789999999997  7888888886 6899999998875422112111110001111121   12234789999999999


Q ss_pred             EEEcCCC--C-----hh-----hhccccHHHHh-cCCCCcEEEEc
Q 020301          240 ISLHPVL--D-----KT-----TYHLINKERLA-TMKKEAILVNC  271 (328)
Q Consensus       240 V~l~~pl--t-----~~-----t~~li~~~~~~-~mk~ga~lIN~  271 (328)
                      |..-+=.  .     ++     ..--++++.++ .+|+++++.=+
T Consensus       228 vyt~~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~  272 (331)
T PRK02102        228 IYTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHC  272 (331)
T ss_pred             EEEcCcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECC
Confidence            9764310  0     11     12236778888 47888887755

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.88  E-value=0.0032  Score=55.97  Aligned_cols=102  Identities=24%  Similarity=0.227  Sum_probs=62.7

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HH------------HHHhhhhhhhhcCC-CCCcc-
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE------------KFVTAYGQFLKANG-EQPVT-  223 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~~------------~~~~~~~~~~~~~~-~~~~~-  223 (328)
                      ..|.+++|.|+|+|.+|..+|+.| ...|. ++..+|+..-+.  +.            ...+...+.+++-. ..... 
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~L-a~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~   95 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYL-AGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTA   95 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHH-HHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence            469999999999999999999998 47787 899999863100  00            00000000011000 00000 


Q ss_pred             ---ccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCC
Q 020301          224 ---WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK  264 (328)
Q Consensus       224 ---~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~  264 (328)
                         .....+++++++++|+|+.|+. +.+++.++++...+..+|
T Consensus        96 ~~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~ip  138 (202)
T TIGR02356        96 LKERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVALGTP  138 (202)
T ss_pred             ehhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence               0011245678999999988875 678888888877665543

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.87  E-value=0.0039  Score=62.67  Aligned_cols=104  Identities=19%  Similarity=0.196  Sum_probs=64.3

Q ss_pred             ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      +.++.|++++|+|.|.+|+.++..+ ...|++|.+++|+..+. ++..+.+       +.   ......++.+ +..+|+
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L-~~~G~~V~i~~R~~~~~-~~la~~~-------~~---~~~~~~~~~~-l~~~Di  393 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTL-ARAGAELLIFNRTKAHA-EALASRC-------QG---KAFPLESLPE-LHRIDI  393 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHh-------cc---ceechhHhcc-cCCCCE
Confidence            3467899999999999999999997 58899999999876432 2221111       00   0001122222 578999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      |++|+|....    +. ..+.     .+++++.-.+.. +. |.++.++
T Consensus       394 VInatP~g~~----~~-~~l~-----~~v~D~~Y~P~~-T~-ll~~A~~  430 (477)
T PRK09310        394 IINCLPPSVT----IP-KAFP-----PCVVDINTLPKH-SP-YTQYARS  430 (477)
T ss_pred             EEEcCCCCCc----ch-hHHh-----hhEEeccCCCCC-CH-HHHHHHH
Confidence            9999996542    22 2221     267777665532 22 5555544

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.85  E-value=0.0057  Score=56.16  Aligned_cols=88  Identities=14%  Similarity=0.216  Sum_probs=59.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      -++-|+|.|.+++.+|+.+ +.+|++|.++|+++.-.                          + ...+..++.+....|
T Consensus       101 ~~L~IfGaG~va~~la~la-~~lGf~V~v~D~R~~~~--------------------------~-~~~~~~~~~~~~~~~  152 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRAL-APLPCRVTWVDSREAEF--------------------------P-EDLPDGVATLVTDEP  152 (246)
T ss_pred             CEEEEECCcHHHHHHHHHH-hcCCCEEEEEeCCcccc--------------------------c-ccCCCCceEEecCCH
Confidence            3699999999999999985 89999999999764310                          0 001123333322212


Q ss_pred             CChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020301          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (328)
Q Consensus       246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i  291 (328)
                                .+.+..+.++.++|=+.|+.-.|.++|..+|++...
T Consensus       153 ----------~~~~~~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~  188 (246)
T TIGR02964       153 ----------EAEVAEAPPGSYFLVLTHDHALDLELCHAALRRGDF  188 (246)
T ss_pred             ----------HHHHhcCCCCcEEEEEeCChHHHHHHHHHHHhCCCC
Confidence                      233334557788888889999999999999954333

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=96.85  E-value=0.0063  Score=64.16  Aligned_cols=130  Identities=18%  Similarity=0.185  Sum_probs=85.5

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHH-hhhhhhhhcCCCCC-------ccccccCCHHHHhh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFV-TAYGQFLKANGEQP-------VTWKRASSMDEVLR  235 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~-~~~~~~~~~~~~~~-------~~~~~~~~l~ell~  235 (328)
                      ++|+|||.|.||..+|..++ ..|++|..||+++.....  +.. ..+....+.....+       .......+++ .++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  391 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSA-SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFD  391 (714)
T ss_pred             ceEEEECCchHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hhc
Confidence            57999999999999999985 669999999998754211  111 11111111111100       0112234554 469


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCC
Q 020301          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~  300 (328)
                      .||+|+=++|-..+.+.-+-++.=+.++|+++|-..+.+  ++-..|.++++. .=.-.++=.|.
T Consensus       392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~-p~r~ig~Hff~  453 (714)
T TIGR02437       392 NVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKR-PENFCGMHFFN  453 (714)
T ss_pred             CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-cccEEEEecCC
Confidence            999999999988888877777777889999988765443  666777777764 33345555553

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=96.84  E-value=0.01  Score=50.77  Aligned_cols=113  Identities=18%  Similarity=0.261  Sum_probs=71.4

Q ss_pred             CCCEEEEEe--cCHHHHHHHHHHHhcCCcEEEEEcCCch--hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          164 KGQTVGVIG--AGRIGSAYARMMVEGFKMNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       164 ~g~tvgIiG--~G~IG~~vA~~l~~~fg~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      .|+|+++||  .+++.++++..+ ..||+++.+..|..-  +...+..+.-.+.+...|   .......++++.+++||+
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~-~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g---~~i~~~~~~~e~l~~aDv   76 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELL-AKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG---GKITITDDIEEALKGADV   76 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHH-HHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT---TEEEEESSHHHHHTT-SE
T ss_pred             CCCEEEEECCCCChHHHHHHHHH-HHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC---CCeEEEeCHHHhcCCCCE
Confidence            488999999  489999999986 689999999988752  221122211001111112   112233799999999999


Q ss_pred             EEEcCCCC----hh-------hhccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 020301          240 ISLHPVLD----KT-------TYHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (328)
Q Consensus       240 V~l~~plt----~~-------t~~li~~~~~~~mk~ga~lIN~a---RG~~vde~  280 (328)
                      |..-.--+    +.       ..-.++++.++.+|++++|.-+.   ||.=|+.+
T Consensus        77 vy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~~e  131 (158)
T PF00185_consen   77 VYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLPANRGEEVSDE  131 (158)
T ss_dssp             EEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBEHH
T ss_pred             EEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeCHh
Confidence            96544331    11       11457899999999999998873   66544443

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.84  E-value=0.0035  Score=53.61  Aligned_cols=41  Identities=17%  Similarity=0.078  Sum_probs=35.8

Q ss_pred             ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      ..+|.|+++.|||.|.+|...++.| ...|++|.++++...+
T Consensus         8 ~l~l~~~~vlVvGGG~va~rka~~L-l~~ga~V~VIsp~~~~   48 (157)
T PRK06719          8 MFNLHNKVVVIIGGGKIAYRKASGL-KDTGAFVTVVSPEICK   48 (157)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCccCH
Confidence            3589999999999999999999997 5789999999876543

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.78  E-value=0.0056  Score=58.56  Aligned_cols=72  Identities=19%  Similarity=0.248  Sum_probs=48.5

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccc-cccCCHHHHhhcCCEEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiV~l  242 (328)
                      .|++|+|+|+|-.|....+. ++++|++|+++|++.++.  ++..++       |...... .....++++-+.+|+++.
T Consensus       166 pG~~V~I~G~GGlGh~avQ~-Aka~ga~Via~~~~~~K~--e~a~~l-------GAd~~i~~~~~~~~~~~~~~~d~ii~  235 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQY-AKAMGAEVIAITRSEEKL--ELAKKL-------GADHVINSSDSDALEAVKEIADAIID  235 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHH-HHHcCCeEEEEeCChHHH--HHHHHh-------CCcEEEEcCCchhhHHhHhhCcEEEE
Confidence            48999999999999988888 589999999999997653  111112       2211111 111233444444999999


Q ss_pred             cCC
Q 020301          243 HPV  245 (328)
Q Consensus       243 ~~p  245 (328)
                      ++|
T Consensus       236 tv~  238 (339)
T COG1064         236 TVG  238 (339)
T ss_pred             CCC
Confidence            988

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.77  E-value=0.0063  Score=49.78  Aligned_cols=110  Identities=26%  Similarity=0.337  Sum_probs=59.6

Q ss_pred             EEEEEec-CHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          167 TVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       167 tvgIiG~-G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      +|+|+|+ |+||+.+++.+.+.-++++. ++|+..++...+..   +   +-.+..+.+.....++++++.++|+++-.-
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~---g---~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT   75 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDV---G---ELAGIGPLGVPVTDDLEELLEEADVVIDFT   75 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBC---H---HHCTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchh---h---hhhCcCCcccccchhHHHhcccCCEEEEcC
Confidence            6999999 99999999997555789855 55766522111100   0   001222333444579999999999997664


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~  287 (328)
                        +|+.-.-.-+..++   .|.-+|--..|---++.+.++.+.
T Consensus        76 --~p~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~~~l~~~a  113 (124)
T PF01113_consen   76 --NPDAVYDNLEYALK---HGVPLVIGTTGFSDEQIDELEELA  113 (124)
T ss_dssp             ---HHHHHHHHHHHHH---HT-EEEEE-SSSHHHHHHHHHHHT
T ss_pred             --ChHHhHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHHh
Confidence              34433222233333   355556555565333334444443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=96.75  E-value=0.0069  Score=56.17  Aligned_cols=109  Identities=17%  Similarity=0.181  Sum_probs=59.0

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      .++||||+|+||+.+++.+.+.-++++.+ +++.....  .....+       +   .+...+.+++++-...|+|+.|.
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~--~~~~~~-------~---~~~~~~~d~~~l~~~~DvVve~t   69 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSID--AVRRAL-------G---EAVRVVSSVDALPQRPDLVVECA   69 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHH--HHhhhh-------c---cCCeeeCCHHHhccCCCEEEECC
Confidence            37999999999999999874322565543 33322211  000000       0   01223467888745689999998


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCCc
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNPM  291 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde---~aL~~aL~~g~i  291 (328)
                      |.  +...   +-....++.|.-++-.+-|.+.|.   +.|.++.+++..
T Consensus        70 ~~--~~~~---e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~  114 (265)
T PRK13303         70 GH--AALK---EHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGA  114 (265)
T ss_pred             CH--HHHH---HHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCC
Confidence            83  2222   222233344444554444555543   445666655443

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.72  E-value=0.0046  Score=59.42  Aligned_cols=95  Identities=21%  Similarity=0.213  Sum_probs=61.7

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh--------------------HHHHHHhhhhhhhhcC-C
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--------------------RLEKFVTAYGQFLKAN-G  218 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~--------------------~~~~~~~~~~~~~~~~-~  218 (328)
                      ..|.+++|.|||+|.+|..+|+.|+ ..|. ++..+|+..-+                    +.+...+    .+++- .
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La-~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~----~l~~inp   94 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALV-RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKE----HLRKINS   94 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHH----HHHHHCC
Confidence            4699999999999999999999984 7787 78888886410                    1000000    01100 0


Q ss_pred             CCCccc----cccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhc
Q 020301          219 EQPVTW----KRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (328)
Q Consensus       219 ~~~~~~----~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~  261 (328)
                      ......    ....+++++++++|+|+.+. .+.+++.++|+-..+.
T Consensus        95 ~v~i~~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~~~  140 (338)
T PRK12475         95 EVEIVPVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQKY  140 (338)
T ss_pred             CcEEEEEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHHHc
Confidence            000000    01135788999999999988 5788888888766553

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=96.72  E-value=0.29  Score=46.37  Aligned_cols=102  Identities=20%  Similarity=0.232  Sum_probs=67.3

Q ss_pred             cCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       163 l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      +.|.+|+++|= +++.++++..+ ..||++|.+..|..-...++..+.+   ++..|   .......++++.+++||+|.
T Consensus       150 l~gl~i~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~---~~~~g---~~~~~~~d~~~a~~~aDvvy  222 (304)
T PRK00779        150 LKGLKVAWVGDGNNVANSLLLAA-ALLGFDLRVATPKGYEPDPEIVEKI---AKETG---ASIEVTHDPKEAVKGADVVY  222 (304)
T ss_pred             cCCcEEEEEeCCCccHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHH---HHHcC---CeEEEEcCHHHHhCCCCEEE
Confidence            77899999998 78899999986 6899999999875422111111110   11112   11223479999999999997


Q ss_pred             Ec----CCCC---hh-----hhccccHHHHhcCCCCcEEEEc
Q 020301          242 LH----PVLD---KT-----TYHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       242 l~----~plt---~~-----t~~li~~~~~~~mk~ga~lIN~  271 (328)
                      .-    ....   ++     -.--++++.++.+|+++++.-+
T Consensus       223 ~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp  264 (304)
T PRK00779        223 TDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHC  264 (304)
T ss_pred             ecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecC
Confidence            64    2211   11     1234678888889988888776

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=96.71  E-value=0.03  Score=52.95  Aligned_cols=132  Identities=24%  Similarity=0.320  Sum_probs=85.7

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HH-HhhhhhhhhcCCCCCc-----c---ccccCCHHHH
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KF-VTAYGQFLKANGEQPV-----T---WKRASSMDEV  233 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~-~~~~~~~~~~~~~~~~-----~---~~~~~~l~el  233 (328)
                      -+++||||.|.||+.+|..++ .-|..|..+|+++.....  .. .+.+.... ..|....     .   ....+++. .
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A-~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~-~~g~l~~~~~~~~l~~i~~~~~~~-~   79 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFA-LAGYDVVLKDISPEALERALAYIEKNLEKLV-EKGKLTEEEADAALARITPTTDLA-A   79 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHh-hcCCceEEEeCCHHHHHHHHHHHHHHHHHHH-hcCCCChhhHHHHHhhccccCchh-H
Confidence            478999999999999999975 456999999998543111  01 11111111 1121100     0   11122333 6


Q ss_pred             hhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCC
Q 020301          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (328)
Q Consensus       234 l~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP  303 (328)
                      ++.||+|+=.+|-+-+.++-+-++.=...||+++|= |||+   +.-.+|.++++. +=...++=.|.+-|
T Consensus        80 l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~r-per~iG~HFfNP~~  146 (307)
T COG1250          80 LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALKR-PERFIGLHFFNPVP  146 (307)
T ss_pred             hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhCC-chhEEEEeccCCCC
Confidence            899999999999888888777777777789999885 4444   566788888844 44566776665544

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.70  E-value=0.01  Score=58.78  Aligned_cols=120  Identities=11%  Similarity=0.090  Sum_probs=71.3

Q ss_pred             ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc----------hhHHHHHHhhhhhhhhcCCCCCc----ccc
Q 020301          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ----------ATRLEKFVTAYGQFLKANGEQPV----TWK  225 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~----~~~  225 (328)
                      |.+|.|+||.|.|+|++|+..|+.| ..+|++|++...+.          ...+. +..++... ........    +. 
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L-~e~GAkVVaVSD~~G~iy~~~Gld~~~l~-~~~~~k~~-~~~~v~~~~~~~ga-  298 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKV-LELGGKVVTMSDSDGYIYDPDGIDREKLD-YIMELKNL-YRGRIREYAEKYGC-  298 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHH-HHHHHHhh-cCCchhhhHhhcCC-
Confidence            3579999999999999999999997 68999999854411          01110 00111000 00000000    11 


Q ss_pred             ccCCHHHHh-hcCCEEEEcCCCChhhhccccHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHcC
Q 020301          226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKK-EA-ILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       226 ~~~~l~ell-~~aDiV~l~~plt~~t~~li~~~~~~~mk~-ga-~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      ...+-++++ ..|||++-|     .+.+.|+++...+++. |. +++--|-| .+..+|.....+.|
T Consensus       299 ~~i~~d~~~~~~cDIliPa-----Al~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~~~L~~rg  359 (444)
T PRK14031        299 KYVEGARPWGEKGDIALPS-----ATQNELNGDDARQLVANGVIAVSEGANM-PSTPEAIKVFQDAK  359 (444)
T ss_pred             EEcCCcccccCCCcEEeec-----ccccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHHHHHHHCC
Confidence            112334443 469999765     4588899999999865 44 55555667 56666665444444

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.69  E-value=0.0059  Score=49.47  Aligned_cols=95  Identities=11%  Similarity=0.109  Sum_probs=53.2

Q ss_pred             EEEEEe-cCHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHHhhhhhhhhcCCCCCc--cccccCCHHHHhhcCCEEEE
Q 020301          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL  242 (328)
Q Consensus       167 tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV~l  242 (328)
                      ++||+| .|.+|+.+++.+.+.=+.++.+. ++.... .+.....+.      .....  ......+++  ..++|+|++
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~DvV~~   71 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSA-GKRVSEAGP------HLKGEVVLELEPEDFE--ELAVDIVFL   71 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhc-CcCHHHHCc------ccccccccccccCChh--hcCCCEEEE
Confidence            489999 59999999998743236777666 433211 111111110      00000  000112222  258999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      |+|.. .+...+. .....+++|.++|+++
T Consensus        72 ~~~~~-~~~~~~~-~~~~~~~~g~~viD~s   99 (122)
T smart00859       72 ALPHG-VSKEIAP-LLPKAAEAGVKVIDLS   99 (122)
T ss_pred             cCCcH-HHHHHHH-HHHhhhcCCCEEEECC
Confidence            99954 3333322 2345679999999997

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.65  E-value=0.0099  Score=54.86  Aligned_cols=66  Identities=21%  Similarity=0.279  Sum_probs=45.5

Q ss_pred             CEEEEEec-CHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .+|+|+|+ |+||+.+++.+.+.-++++.+ +|+.......            .  ...+...+.+++++++.+|+|+.+
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~------------~--~~~~i~~~~dl~~ll~~~DvVid~   67 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG------------Q--GALGVAITDDLEAVLADADVLIDF   67 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc------------c--CCCCccccCCHHHhccCCCEEEEC
Confidence            37999998 999999999864334788765 6766532100            0  111222357899999899999977


Q ss_pred             CC
Q 020301          244 PV  245 (328)
Q Consensus       244 ~p  245 (328)
                      .|
T Consensus        68 t~   69 (257)
T PRK00048         68 TT   69 (257)
T ss_pred             CC
Confidence            76

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.64  E-value=0.014  Score=46.43  Aligned_cols=83  Identities=17%  Similarity=0.168  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhcccc
Q 020301          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN  255 (328)
Q Consensus       176 IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~  255 (328)
                      -+..+++.| +..|++|.+|||..........          +. ..+.....++++.++.+|+|+++.+ -++-+.+--
T Consensus        18 p~~~l~~~L-~~~g~~V~~~DP~v~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~D~vvl~t~-h~~f~~l~~   84 (106)
T PF03720_consen   18 PALELIEEL-KERGAEVSVYDPYVDEEEIKEL----------GK-LEGVEVCDDLEEALKGADAVVLATD-HDEFRELDW   84 (106)
T ss_dssp             HHHHHHHHH-HHTT-EEEEE-TTSHHHHHHHH----------CH-HHCEEEESSHHHHHTTESEEEESS---GGGGCCGH
T ss_pred             HHHHHHHHH-HHCCCEEEEECCccChHHHHhh----------CC-ccceEEecCHHHHhcCCCEEEEEec-CHHHhccCH
Confidence            467899987 6889999999999765332110          00 0112234689999999999999988 455555333


Q ss_pred             HHHHhcCCCCcEEEEc
Q 020301          256 KERLATMKKEAILVNC  271 (328)
Q Consensus       256 ~~~~~~mk~ga~lIN~  271 (328)
                      .+....|+++.++|++
T Consensus        85 ~~~~~~~~~~~~iiD~  100 (106)
T PF03720_consen   85 EEIAKLMRKPPVIIDG  100 (106)
T ss_dssp             HHHHHHSCSSEEEEES
T ss_pred             HHHHHhcCCCCEEEEC
Confidence            4556778889999998

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.64  E-value=0.0057  Score=54.83  Aligned_cols=97  Identities=16%  Similarity=0.177  Sum_probs=66.7

Q ss_pred             ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      ..++.|++|.|||.|.+|..=|+.+ ...|++|+++.+...++.....       +..+.. .. ......+++ ..+++
T Consensus         7 ~~~l~~k~VlvvGgG~va~rKa~~l-l~~ga~v~Vvs~~~~~el~~~~-------~~~~i~-~~-~~~~~~~~~-~~~~l   75 (210)
T COG1648           7 FLDLEGKKVLVVGGGSVALRKARLL-LKAGADVTVVSPEFEPELKALI-------EEGKIK-WI-EREFDAEDL-DDAFL   75 (210)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHH-HhcCCEEEEEcCCccHHHHHHH-------HhcCcc-hh-hcccChhhh-cCceE
Confidence            3579999999999999999999998 5889999999998744443322       222211 10 122344444 44999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      |+.+++..     -+|+..++.+++-.++||+.
T Consensus        76 viaAt~d~-----~ln~~i~~~a~~~~i~vNv~  103 (210)
T COG1648          76 VIAATDDE-----ELNERIAKAARERRILVNVV  103 (210)
T ss_pred             EEEeCCCH-----HHHHHHHHHHHHhCCceecc
Confidence            99998733     26677777777767778774

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.62  E-value=0.015  Score=53.38  Aligned_cols=119  Identities=22%  Similarity=0.305  Sum_probs=72.7

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEE--------cCCchh--HHHHHHhhhhhhhhcCCCCCcc-----cc
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY--------DLYQAT--RLEKFVTAYGQFLKANGEQPVT-----WK  225 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~--------d~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~  225 (328)
                      .++.|+++.|-|+|++|+.+|+.| ...|++|++.        |+..-+  .+.+..+..+..     .....     ..
T Consensus        28 ~~l~g~~v~IqGfG~VG~~~a~~l-~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~-----v~~~~~~~~~~~  101 (244)
T PF00208_consen   28 DSLEGKRVAIQGFGNVGSHAARFL-AELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSR-----VDDYPLESPDGA  101 (244)
T ss_dssp             HSSTTCEEEEEESSHHHHHHHHHH-HHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSH-----STTGTHTCSSTS
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCc-----ccccccccccce
Confidence            369999999999999999999997 5789999876        554321  111111111100     11110     00


Q ss_pred             ccCCHH-HHh-hcCCEEEEcCCCChhhhccccHHHHh-cCCCCc-EEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          226 RASSMD-EVL-READVISLHPVLDKTTYHLINKERLA-TMKKEA-ILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       226 ~~~~l~-ell-~~aDiV~l~~plt~~t~~li~~~~~~-~mk~ga-~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      ...+-+ +++ ..||+++.|-     ..+.|+.+... .+|+++ +++--+-+++- .+|.. .|++..|.
T Consensus       102 ~~~~~~~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI~  165 (244)
T PF00208_consen  102 EYIPNDDEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGIL  165 (244)
T ss_dssp             EEECHHCHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-E
T ss_pred             eEeccccccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCCE
Confidence            111222 555 5899999883     36778888888 777554 55566777765 44444 77766554

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.58  E-value=0.013  Score=56.43  Aligned_cols=77  Identities=22%  Similarity=0.221  Sum_probs=45.5

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh-hhhhhhcCC--------CCCccccccCCHHHHhhcC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANG--------EQPVTWKRASSMDEVLREA  237 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~l~ell~~a  237 (328)
                      +|||+|+|+||+.+++.+...=++++.+........ ..+... ++ +- -.+        ....+.....++++++..+
T Consensus         3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~-~~~la~~~G-~~-~~~~~~~~~~~~~~~~i~V~~~~~el~~~v   79 (341)
T PRK04207          3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDY-EARVAVEKG-YP-LYVADPEREKAFEEAGIPVAGTIEDLLEKA   79 (341)
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHH-HHHHHHhcC-CC-ccccCccccccccCCceEEcCChhHhhccC
Confidence            799999999999999987544578887654322211 111111 10 00 000        0001122234678888999


Q ss_pred             CEEEEcCCC
Q 020301          238 DVISLHPVL  246 (328)
Q Consensus       238 DiV~l~~pl  246 (328)
                      |+|+.|.|.
T Consensus        80 DVVIdaT~~   88 (341)
T PRK04207         80 DIVVDATPG   88 (341)
T ss_pred             CEEEECCCc
Confidence            999999873

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.55  E-value=0.0064  Score=60.71  Aligned_cols=118  Identities=17%  Similarity=0.173  Sum_probs=71.0

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      -+.+++++|+|+|..|+++|+.| +..|++|.++|...........    ..++..|..   ........+.+..+|+|+
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~~~~~~----~~l~~~gi~---~~~~~~~~~~~~~~dlVV   82 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFL-VKLGAKVTAFDKKSEEELGEVS----NELKELGVK---LVLGENYLDKLDGFDVIF   82 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHH-HHCCCEEEEECCCCCccchHHH----HHHHhCCCE---EEeCCCChHHhccCCEEE
Confidence            36789999999999999999997 6999999999987532211100    011222221   111122245568899998


Q ss_pred             EcCCCChhhhc-----------cccHH-HH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          242 LHPVLDKTTYH-----------LINKE-RL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       242 l~~plt~~t~~-----------li~~~-~~-~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      .. |.-+.+..           ++++- .+ +..+...+-|--+.|..--.+-|...|+.
T Consensus        83 ~S-pgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~  141 (458)
T PRK01710         83 KT-PSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE  141 (458)
T ss_pred             EC-CCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            77 43333222           22222 22 22233456666678888888878888875

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.54  E-value=0.018  Score=54.25  Aligned_cols=125  Identities=12%  Similarity=0.255  Sum_probs=65.8

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      ++|+|||.|.+|..+|..++ ..|. +|..+|+..........+-+ ......+ .........+.+ .++.||+|+++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la-~~~~~ev~L~D~~~~~~~~~~~dl~-~~~~~~~-~~~~i~~~~d~~-~~~~aDiVii~~   78 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLA-LKELGDVVLFDIVEGVPQGKALDIA-EAAPVEG-FDTKITGTNDYE-DIAGSDVVVITA   78 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCeEEEEEECCCchhHHHHHHHH-hhhhhcC-CCcEEEeCCCHH-HHCCCCEEEECC
Confidence            58999999999999999875 3332 99999996643211111111 0000001 011111224564 479999999986


Q ss_pred             C--CChh---------hhccccHHH---HhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCccEEE
Q 020301          245 V--LDKT---------TYHLINKER---LATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG  295 (328)
Q Consensus       245 p--lt~~---------t~~li~~~~---~~~mk~ga~lIN~aRG~~vde~aL~~a--L~~g~i~gaa  295 (328)
                      .  ..+.         +..++ .+.   +....+.+++|+++-..=+-...+.+.  +...++.|.+
T Consensus        79 ~~p~~~~~~r~~~~~~n~~i~-~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~g  144 (307)
T PRK06223         79 GVPRKPGMSRDDLLGINAKIM-KDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMA  144 (307)
T ss_pred             CCCCCcCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeC
Confidence            3  2211         11112 222   223336788888854332333334332  2224566664

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=96.53  E-value=0.2  Score=48.17  Aligned_cols=106  Identities=14%  Similarity=0.148  Sum_probs=65.5

Q ss_pred             ccCCCEEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       162 ~l~g~tvgIiG~G--~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      .+.|.+|++||-+  ++.++++..+ ..||+++.+..|..-...++..+.--..++..|.   ......++++.+++||+
T Consensus       153 ~l~g~~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~---~i~~~~d~~ea~~~aDv  228 (336)
T PRK03515        153 AFNEMTLAYAGDARNNMGNSLLEAA-ALTGLDLRLVAPKACWPEAALVTECRALAQKNGG---NITLTEDIAEGVKGADF  228 (336)
T ss_pred             CcCCCEEEEeCCCcCcHHHHHHHHH-HHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCC---eEEEEcCHHHHhCCCCE
Confidence            4789999999976  6889999986 5899999999875421111111100001111221   22345799999999999


Q ss_pred             EEEcC----CCCh---h------hhccccHHHHhcC-CCCcEEEEc
Q 020301          240 ISLHP----VLDK---T------TYHLINKERLATM-KKEAILVNC  271 (328)
Q Consensus       240 V~l~~----plt~---~------t~~li~~~~~~~m-k~ga~lIN~  271 (328)
                      |..-.    ....   +      ..--++++.++.. |+++++.-+
T Consensus       229 vytd~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHc  274 (336)
T PRK03515        229 IYTDVWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHC  274 (336)
T ss_pred             EEecCcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECC
Confidence            97641    1000   0      1223677788874 788877766

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.47  E-value=0.0065  Score=59.21  Aligned_cols=100  Identities=17%  Similarity=0.110  Sum_probs=64.3

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      +++.|||.|.||+.+|..|+ .-| .+|++.||+..+...- .+.-.   .+-....+.......+.+++++.|+|+.++
T Consensus         2 ~~ilviGaG~Vg~~va~~la-~~~d~~V~iAdRs~~~~~~i-~~~~~---~~v~~~~vD~~d~~al~~li~~~d~VIn~~   76 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLA-QNGDGEVTIADRSKEKCARI-AELIG---GKVEALQVDAADVDALVALIKDFDLVINAA   76 (389)
T ss_pred             CcEEEECCchhHHHHHHHHH-hCCCceEEEEeCCHHHHHHH-Hhhcc---ccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence            57999999999999999985 555 9999999997543211 00000   000011111223346889999999999999


Q ss_pred             CCChhhhccccHHHH-hcCCCCcEEEEcCCCcc
Q 020301          245 VLDKTTYHLINKERL-ATMKKEAILVNCSRGPV  276 (328)
Q Consensus       245 plt~~t~~li~~~~~-~~mk~ga~lIN~aRG~~  276 (328)
                      |..      ++...+ +.++.|.-.++++=..-
T Consensus        77 p~~------~~~~i~ka~i~~gv~yvDts~~~~  103 (389)
T COG1748          77 PPF------VDLTILKACIKTGVDYVDTSYYEE  103 (389)
T ss_pred             Cch------hhHHHHHHHHHhCCCEEEcccCCc
Confidence            943      222333 34567888888875543

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.47  E-value=0.056  Score=49.70  Aligned_cols=151  Identities=11%  Similarity=0.100  Sum_probs=94.6

Q ss_pred             ccccCCCEEEEEecCHHHHHHHHHHHhcCCc-----------EEEEEcCCch-----hHHHHHHhhhhhhhhcCCCCCcc
Q 020301          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-----------NLIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVT  223 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-----------~V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  223 (328)
                      |..|...++.|+|.|.-|-.+|+.+. ..++           +++.+|+.--     +....+...+.++.+..      
T Consensus        20 g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~------   92 (254)
T cd00762          20 KKKISEHKVLFNGAGAAALGIANLIV-XLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPE------   92 (254)
T ss_pred             CCChhhcEEEEECcCHHHHHHHHHHH-HHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcc------
Confidence            35688899999999999999999874 4444           6888887520     00111111110011111      


Q ss_pred             ccccCCHHHHhh--cCCEEEEcCCCChhhhccccHHHHhcCC---CCcEEEEcCCCcc---cCHHHHHHHHHcCCccEEE
Q 020301          224 WKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPV---IDEVALVEHLKQNPMFRVG  295 (328)
Q Consensus       224 ~~~~~~l~ell~--~aDiV~l~~plt~~t~~li~~~~~~~mk---~ga~lIN~aRG~~---vde~aL~~aL~~g~i~gaa  295 (328)
                       ....+|.|+++  +.|+++=.    ....++|.++.++.|.   +..++.=.|.-..   +..++.+++=+-..|.+.|
T Consensus        93 -~~~~~L~eav~~~kptvlIG~----S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtG  167 (254)
T cd00762          93 -RESGDLEDAVEAAKPDFLIGV----SRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASG  167 (254)
T ss_pred             -cccCCHHHHHHhhCCCEEEEe----CCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEEC
Confidence             12368999999  99999643    1225899999999999   8999999988766   3445555553333455554


Q ss_pred             EeCCCCCCCCC-CCcccCCCeEEcCCCC
Q 020301          296 LDVFEDEPYMK-PGLSEMKNAIVVPHIA  322 (328)
Q Consensus       296 lDV~~~EP~~~-~~L~~~~nvilTPHia  322 (328)
                      --.+.++-.-. ...-+..|+++-|=++
T Consensus       168 spf~pv~~~g~~~~~~Q~NN~~iFPGig  195 (254)
T cd00762         168 SPFHPVELNGGTYKPGQGNNLYIFPGVA  195 (254)
T ss_pred             CCCCCcccCCceeecccccceeeccchh
Confidence            43222222100 1345678999999765

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.46  E-value=0.017  Score=55.06  Aligned_cols=103  Identities=18%  Similarity=0.286  Sum_probs=58.2

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      .+++|+|||.|.+|..+|-.+ ...|.  ++..+|++.........+ +.... .- ...... ...+. +.++.||+|+
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l-~~~~~~~el~L~D~~~~~~~g~~~D-l~~~~-~~-~~~~~i-~~~~~-~~~~~adivI   78 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYAL-VNQGIADELVIIDINKEKAEGDAMD-LSHAV-PF-TSPTKI-YAGDY-SDCKDADLVV   78 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCCchhHHHHHH-HHhhc-cc-cCCeEE-EeCCH-HHhCCCCEEE
Confidence            467999999999999999986 45565  899999876432111111 10000 00 001111 22344 4579999998


Q ss_pred             EcCCC--Ch-hhh-ccc--c----HH---HHhcCCCCcEEEEcC
Q 020301          242 LHPVL--DK-TTY-HLI--N----KE---RLATMKKEAILVNCS  272 (328)
Q Consensus       242 l~~pl--t~-~t~-~li--~----~~---~~~~mk~ga~lIN~a  272 (328)
                      ++.-.  .| +|+ .++  |    ++   .+..-.|++++|+++
T Consensus        79 itag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         79 ITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            87543  11 122 111  1    12   222334789999996

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.44  E-value=0.013  Score=55.97  Aligned_cols=129  Identities=16%  Similarity=0.214  Sum_probs=71.0

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      +..++|+|||.|.+|..+|..++ ..| ++|..+|.+++....+..+.... ....+ .........+.+ .++.||+|+
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la-~~gl~~i~LvDi~~~~~~~~~ld~~~~-~~~~~-~~~~I~~~~d~~-~l~~aDiVI   79 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIV-LKNLGDVVLFDIVKNIPQGKALDISHS-NVIAG-SNSKVIGTNNYE-DIAGSDVVI   79 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCCchhhHHHHHHHhh-hhccC-CCeEEEECCCHH-HhCCCCEEE
Confidence            44579999999999999999864 445 58999999876432222221110 00011 111222224664 579999999


Q ss_pred             EcCCCC----------------hhhhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCccEEE
Q 020301          242 LHPVLD----------------KTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG  295 (328)
Q Consensus       242 l~~plt----------------~~t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gaa  295 (328)
                      ++.-..                .++..++.  .+.+....|.+++||++--.=+-...+.+...  ..++.|.+
T Consensus        80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            976221                11112121  11233345788999997433223444444332  24566666

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=96.42  E-value=0.1  Score=50.48  Aligned_cols=106  Identities=22%  Similarity=0.297  Sum_probs=64.4

Q ss_pred             ccCCCEEEEEecC--------HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH
Q 020301          162 LLKGQTVGVIGAG--------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (328)
Q Consensus       162 ~l~g~tvgIiG~G--------~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (328)
                      .+.|+||+|+|.|        ++.++++..+ ..|||+|.+..|..-...++..+.--+.++..|.   ......++++.
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~---~~~~~~d~~ea  242 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGG---KFNIVNSMDEA  242 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCC---eEEEEcCHHHH
Confidence            4789999999853        4457777776 5899999999886321111111100000112221   22235799999


Q ss_pred             hhcCCEEEEcC----C----------CChh-----------------hhccccHHHHhcCC-CCcEEEEc
Q 020301          234 LREADVISLHP----V----------LDKT-----------------TYHLINKERLATMK-KEAILVNC  271 (328)
Q Consensus       234 l~~aDiV~l~~----p----------lt~~-----------------t~~li~~~~~~~mk-~ga~lIN~  271 (328)
                      ++.||+|..-.    .          ..+.                 -.-.++++.++.+| +++++.-+
T Consensus       243 ~~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vt~e~l~~a~~~~~i~MHc  312 (357)
T TIGR03316       243 FKDADIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYMHC  312 (357)
T ss_pred             hCCCCEEEECCeeccccccccchhcccchhhhhhhhhccchhHHHHhcCCeECHHHHHhcCCCCcEEECC
Confidence            99999997652    1          0000                 12236888888888 88888776

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.42  E-value=0.038  Score=52.15  Aligned_cols=107  Identities=18%  Similarity=0.149  Sum_probs=71.1

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .|++++|||--.=-..++++| ...|++|+.+.-....        |         ...+.....+.++++++||+|++-
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l-~~~G~~v~~~g~~~~~--------~---------~~~g~~~~~~~~~~~~~ad~ii~~   62 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKL-VELGAKVSLVGFDQLD--------H---------GFTGATKSSSLEEALSDVDVIILP   62 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeccccc--------c---------ccCCceeeccHHHHhccCCEEEEC
Confidence            478999999998888999997 5789998875422110        0         011222334678899999999999


Q ss_pred             CCCChhhh---c-------cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccE
Q 020301          244 PVLDKTTY---H-------LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (328)
Q Consensus       244 ~plt~~t~---~-------li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g  293 (328)
                      +|.+.+..   .       -++++.+++|++|..++ ++.+.   .. +-+++++..+..
T Consensus        63 ~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~~  117 (296)
T PRK08306         63 VPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRKL  117 (296)
T ss_pred             CccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCeE
Confidence            99765431   1       13678999999998544 44332   22 345566666654

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.39  E-value=0.69  Score=43.84  Aligned_cols=102  Identities=23%  Similarity=0.314  Sum_probs=69.6

Q ss_pred             ccCCCEEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       162 ~l~g~tvgIiG~---G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      .+.|++|+++|=   +++.++++..+ ..||+++.+..|..-..              ....  ......++++.++.||
T Consensus       153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~-~~~g~~~~~~~P~~~~~--------------~~~~--~~~~~~d~~ea~~~aD  215 (305)
T PRK00856        153 RLEGLKVAIVGDIKHSRVARSNIQAL-TRLGAEVRLIAPPTLLP--------------EGMP--EYGVHTDLDEVIEDAD  215 (305)
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEECCcccCc--------------cccc--ceEEECCHHHHhCCCC
Confidence            378999999988   58999999986 68999999988743210              0000  1134579999999999


Q ss_pred             EEEEcCCCC--------hhh-----hccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 020301          239 VISLHPVLD--------KTT-----YHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (328)
Q Consensus       239 iV~l~~plt--------~~t-----~~li~~~~~~~mk~ga~lIN~a---RG~~vde~  280 (328)
                      +|....=..        ++-     .-.++++.++.+|+++++.=+-   ||.=|+.+
T Consensus       216 vvyt~~~q~e~~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHcLPa~Rg~Ev~~~  273 (305)
T PRK00856        216 VVMMLRVQKERMDGGLLPSYEEYKRSYGLTAERLALAKPDAIVMHPGPVNRGVEIASD  273 (305)
T ss_pred             EEEECCcccccccccchHHHHHHhccCccCHHHHhhcCCCCEEECCCCCCCCCccCHH
Confidence            997643110        111     2246888888888888887662   66655544

>PLN02342 ornithine carbamoyltransferase

Probab=96.39  E-value=0.69  Score=44.68  Aligned_cols=103  Identities=17%  Similarity=0.172  Sum_probs=66.6

Q ss_pred             ccCCCEEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G-~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .+.|+||+++|=+ ++.++++..+ ..||++|.+..|..-...++..+    .+++.+.  ..+....++++.++.||+|
T Consensus       191 ~l~glkva~vGD~~nva~Sli~~~-~~~G~~v~~~~P~~~~~~~~~~~----~a~~~g~--~~~~~~~d~~eav~~aDVv  263 (348)
T PLN02342        191 RLEGTKVVYVGDGNNIVHSWLLLA-AVLPFHFVCACPKGYEPDAKTVE----KARAAGI--SKIEITNDPAEAVKGADVV  263 (348)
T ss_pred             CcCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccccCHHHHH----HHHHhCC--CcEEEEcCHHHHhCCCCEE
Confidence            4789999999973 5777777775 58999999998754221111111    1111121  1223457999999999999


Q ss_pred             EEcC----CCChh--------hhccccHHHHhcCCCCcEEEEc
Q 020301          241 SLHP----VLDKT--------TYHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       241 ~l~~----plt~~--------t~~li~~~~~~~mk~ga~lIN~  271 (328)
                      ..-.    -..++        ..-.++++.++.+|+++++.-+
T Consensus       264 y~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp  306 (348)
T PLN02342        264 YTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC  306 (348)
T ss_pred             EECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC
Confidence            7652    11111        1245789999999999888776

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.37  E-value=0.1  Score=48.69  Aligned_cols=149  Identities=20%  Similarity=0.219  Sum_probs=94.8

Q ss_pred             ccccCCCEEEEEecCHHHHHHHHHHHhcC----Cc-------EEEEEcCCc-----hhHHHHHHhhhhhhhhcCCCCCcc
Q 020301          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------NLIYYDLYQ-----ATRLEKFVTAYGQFLKANGEQPVT  223 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~f----g~-------~V~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  223 (328)
                      |..|...++.|+|.|.-|-.+|+.+. ..    |+       +++.+|+.-     ...+..+...|.   +....    
T Consensus        20 g~~l~d~~iv~~GAGsAg~gia~ll~-~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a---~~~~~----   91 (279)
T cd05312          20 GKPLSDQRILFLGAGSAGIGIADLIV-SAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFA---RKDEE----   91 (279)
T ss_pred             CCChhhcEEEEECcCHHHHHHHHHHH-HHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHH---hhcCc----
Confidence            35688999999999999999999874 44    66       899999762     111222222332   11110    


Q ss_pred             ccccCCHHHHhh--cCCEEEEcCCCChhhhccccHHHHhcCC---CCcEEEEcCCCccc---CHHHHHHHHHcCC-ccEE
Q 020301          224 WKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVI---DEVALVEHLKQNP-MFRV  294 (328)
Q Consensus       224 ~~~~~~l~ell~--~aDiV~l~~plt~~t~~li~~~~~~~mk---~ga~lIN~aRG~~v---de~aL~~aL~~g~-i~ga  294 (328)
                       ....+|.|+++  ++|+++=+-    ..-++|+++.++.|.   +..++.=.|.-..-   ..++.+++= +|+ |.+.
T Consensus        92 -~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t-~G~ai~AT  165 (279)
T cd05312          92 -KEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWT-DGRALFAS  165 (279)
T ss_pred             -ccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhh-cCCEEEEe
Confidence             12368999999  889996531    124899999999998   89999999987653   334444442 354 5555


Q ss_pred             EEeCCCCCCCCC-CCcccCCCeEEcCCCC
Q 020301          295 GLDVFEDEPYMK-PGLSEMKNAIVVPHIA  322 (328)
Q Consensus       295 alDV~~~EP~~~-~~L~~~~nvilTPHia  322 (328)
                      |.-.-+.+..-. ..--+..|+++-|=++
T Consensus       166 GsPf~pv~~~Gr~~~p~Q~NN~~iFPGig  194 (279)
T cd05312         166 GSPFPPVEYNGKTYVPGQGNNAYIFPGIG  194 (279)
T ss_pred             CCCCCCeeeCCeEecCCCcceeeeccchh
Confidence            432111111101 1345678999998765

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=96.37  E-value=0.62  Score=44.71  Aligned_cols=106  Identities=16%  Similarity=0.168  Sum_probs=65.8

Q ss_pred             ccCCCEEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       162 ~l~g~tvgIiG~G--~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      .+.|++|++||-+  ++.++.+..+ ..||++|.+..|..-...+...+.--..++..|.   ......++++.+++||+
T Consensus       152 ~l~g~kia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~---~~~~~~d~~ea~~~aDv  227 (332)
T PRK04284        152 PYKDIKFTYVGDGRNNVANALMQGA-AIMGMDFHLVCPKELNPDDELLNKCKEIAAETGG---KITITDDIDEGVKGSDV  227 (332)
T ss_pred             CcCCcEEEEecCCCcchHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcCC---eEEEEcCHHHHhCCCCE
Confidence            3789999999975  7888999986 6899999999875321111111100000111121   12335799999999999


Q ss_pred             EEEcC----CC----Chh-----hhccccHHHHhcCC-CCcEEEEc
Q 020301          240 ISLHP----VL----DKT-----TYHLINKERLATMK-KEAILVNC  271 (328)
Q Consensus       240 V~l~~----pl----t~~-----t~~li~~~~~~~mk-~ga~lIN~  271 (328)
                      |..-.    ..    .++     -..-++++.++.+| |++++.-+
T Consensus       228 vy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp  273 (332)
T PRK04284        228 IYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHC  273 (332)
T ss_pred             EEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECC
Confidence            97642    10    001     12346888888886 58887766

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.32  E-value=0.021  Score=54.26  Aligned_cols=123  Identities=17%  Similarity=0.232  Sum_probs=68.6

Q ss_pred             CEEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCC-ccccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .+|+|||.|.+|..+|-.++ ++..-++..||++.+.......+ ....   ..... .......+.++ ++.||+|+++
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~D-l~~~---~~~~~~~~v~~~~dy~~-~~~adivvit   78 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMD-LQHG---SAFLKNPKIEADKDYSV-TANSKVVIVT   78 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHH-HHHh---hccCCCCEEEECCCHHH-hCCCCEEEEC
Confidence            48999999999999998764 34445899999876432211111 1000   00001 11111245665 7999999986


Q ss_pred             CCC--Ch-hhh-ccc--c-------HHHHhcCCCCcEEEEcCCCcccCHH--HHHHH--HHcCCccEEE
Q 020301          244 PVL--DK-TTY-HLI--N-------KERLATMKKEAILVNCSRGPVIDEV--ALVEH--LKQNPMFRVG  295 (328)
Q Consensus       244 ~pl--t~-~t~-~li--~-------~~~~~~mk~ga~lIN~aRG~~vde~--aL~~a--L~~g~i~gaa  295 (328)
                      .-.  .+ +|+ .++  |       .+.+....|.+++|+++  ..+|.-  .+.+.  +...++.|.+
T Consensus        79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t~~~~k~sg~p~~~viG~g  145 (312)
T cd05293          79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPVDIMTYVAWKLSGLPKHRVIGSG  145 (312)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChHHHHHHHHHHHhCCCHHHEEecC
Confidence            542  11 233 111  1       12344456899999997  344432  33333  4445666664

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=96.31  E-value=0.59  Score=44.88  Aligned_cols=106  Identities=12%  Similarity=0.119  Sum_probs=66.5

Q ss_pred             ccCCCEEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       162 ~l~g~tvgIiG~G--~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      .+.|.+++++|-+  ++.++++..+ ..||++|.+..|..-...++..+.-.+.++..|.   ......++++.++.+|+
T Consensus       153 ~l~gl~va~vGD~~~~v~~S~~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~---~~~~~~d~~~a~~~aDv  228 (334)
T PRK12562        153 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEASLVAECSALAQKHGG---KITLTEDIAAGVKGADF  228 (334)
T ss_pred             CcCCcEEEEECCCCCCHHHHHHHHH-HHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCC---eEEEEcCHHHHhCCCCE
Confidence            4789999999976  7889988886 5899999998875321111111110001111121   12334789999999999


Q ss_pred             EEEcC----CCCh----h-----hhccccHHHHhcC-CCCcEEEEc
Q 020301          240 ISLHP----VLDK----T-----TYHLINKERLATM-KKEAILVNC  271 (328)
Q Consensus       240 V~l~~----plt~----~-----t~~li~~~~~~~m-k~ga~lIN~  271 (328)
                      |..-.    ....    +     -..-++++.++.. |+++++.-+
T Consensus       229 vyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHc  274 (334)
T PRK12562        229 IYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHC  274 (334)
T ss_pred             EEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECC
Confidence            97643    1000    1     1223678888885 788888776

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=96.31  E-value=0.012  Score=58.32  Aligned_cols=117  Identities=15%  Similarity=0.100  Sum_probs=68.0

Q ss_pred             EEEEEecCHHHHHHHH--HHH---hcCCcEEEEEcCCchhHHH--HHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          167 TVGVIGAGRIGSAYAR--MMV---EGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~--~l~---~~fg~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      +|+|||.|.+|...+-  -++   ..-|.+|..||+++.....  .....+   ... ...........++++.++.||+
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~---~~~-~~~~~~I~~ttD~~eal~~AD~   77 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKI---VEE-LGAPLKIEATTDRREALDGADF   77 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHH---HHh-cCCCeEEEEeCCHHHHhcCCCE
Confidence            6999999999998554  122   1235699999998743211  111111   111 1112223334688999999999


Q ss_pred             EEEcCCCCh--h---------hhcc---------------------ccHHHHhcCC---CCcEEEEcCCCcccCHHHHHH
Q 020301          240 ISLHPVLDK--T---------TYHL---------------------INKERLATMK---KEAILVNCSRGPVIDEVALVE  284 (328)
Q Consensus       240 V~l~~plt~--~---------t~~l---------------------i~~~~~~~mk---~ga~lIN~aRG~~vde~aL~~  284 (328)
                      |+.++|...  .         -.++                     +-.+..+.++   |.++++|.+-..-+-..++.+
T Consensus        78 Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k  157 (423)
T cd05297          78 VINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNR  157 (423)
T ss_pred             EEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHH
Confidence            999998310  0         0011                     1123333333   688999987766566666665


Q ss_pred             HHH
Q 020301          285 HLK  287 (328)
Q Consensus       285 aL~  287 (328)
                      ...
T Consensus       158 ~~~  160 (423)
T cd05297         158 YTP  160 (423)
T ss_pred             hCC
Confidence            543

linked to 3D####ucture

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=96.29  E-value=0.025  Score=45.76  Aligned_cols=100  Identities=14%  Similarity=0.204  Sum_probs=64.0

Q ss_pred             CEEEEEe----cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          166 QTVGVIG----AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       166 ~tvgIiG----~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      |+++|||    -|..|..+.+.| +..|.+|+..++....-                   .+...+.+++|.-...|+++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l-~~~G~~v~~Vnp~~~~i-------------------~G~~~y~sl~e~p~~iDlav   60 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNL-KAAGYEVYPVNPKGGEI-------------------LGIKCYPSLAEIPEPIDLAV   60 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHH-HHTT-EEEEESTTCSEE-------------------TTEE-BSSGGGCSST-SEEE
T ss_pred             CEEEEEcccCCCCChHHHHHHHH-HhCCCEEEEECCCceEE-------------------CcEEeeccccCCCCCCCEEE
Confidence            6899999    789999999997 57999999998865321                   12234578888448899999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      +++|. +.+..++ ++. ..+..+.+++..+    -.++.+.+.+++..+.
T Consensus        61 v~~~~-~~~~~~v-~~~-~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~  104 (116)
T PF13380_consen   61 VCVPP-DKVPEIV-DEA-AALGVKAVWLQPG----AESEELIEAAREAGIR  104 (116)
T ss_dssp             E-S-H-HHHHHHH-HHH-HHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred             EEcCH-HHHHHHH-HHH-HHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence            99992 3344444 232 3345778888887    6677788888876665

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.27  E-value=0.03  Score=55.59  Aligned_cols=121  Identities=14%  Similarity=0.121  Sum_probs=73.3

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEE--------EcCCchh--H---HHHHHhhhhhhhh--cCCCCCcccc
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY--------YDLYQAT--R---LEKFVTAYGQFLK--ANGEQPVTWK  225 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~--------~d~~~~~--~---~~~~~~~~~~~~~--~~~~~~~~~~  225 (328)
                      .++.|+||.|=|+|++|+..|+.| ..+|++|++        ||+.--.  .   +.++.+..+....  ..+. + +..
T Consensus       224 ~~l~g~~vaIQGfGnVG~~aA~~L-~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~-~-ga~  300 (445)
T PRK14030        224 IDIKGKTVAISGFGNVAWGAATKA-TELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKF-P-GST  300 (445)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcC-C-CCE
Confidence            468999999999999999999997 689999999        8854221  1   1111111000000  0000 0 111


Q ss_pred             ccCCHHHHh-hcCCEEEEcCCCChhhhccccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       226 ~~~~l~ell-~~aDiV~l~~plt~~t~~li~~~~~~~mk--~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      . .+-++++ ..||+++-|     .+.+.|+.+..+++.  +=.+++-.|-| .+..+|- +.|.+..|.
T Consensus       301 ~-i~~~~~~~~~cDVliPc-----Al~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~  362 (445)
T PRK14030        301 F-FAGKKPWEQKVDIALPC-----ATQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL  362 (445)
T ss_pred             E-cCCccceeccccEEeec-----cccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE
Confidence            1 1233443 359999766     468889998888883  24567777778 5655544 556655554

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.25  E-value=0.011  Score=55.77  Aligned_cols=37  Identities=19%  Similarity=0.383  Sum_probs=32.3

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .|+.+||+|+|-+|..-.+. +++||++|++.|++..+
T Consensus       181 pG~~vgI~GlGGLGh~aVq~-AKAMG~rV~vis~~~~k  217 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQY-AKAMGMRVTVISTSSKK  217 (360)
T ss_pred             CCcEEEEecCcccchHHHHH-HHHhCcEEEEEeCCchh
Confidence            79999999999999776676 69999999999998643

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.25  E-value=0.022  Score=54.13  Aligned_cols=121  Identities=12%  Similarity=0.017  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCCchh------H---HHHHHhhhhhhhhcCCCCC--------ccccccC--CHHHHhhc
Q 020301          176 IGSAYARMMVEGFKMNLIYYDLYQAT------R---LEKFVTAYGQFLKANGEQP--------VTWKRAS--SMDEVLRE  236 (328)
Q Consensus       176 IG~~vA~~l~~~fg~~V~~~d~~~~~------~---~~~~~~~~~~~~~~~~~~~--------~~~~~~~--~l~ell~~  236 (328)
                      ||..+|..++ ..|.+|..||+++..      .   ..+.....-+.....|...        .......  ++.+.+++
T Consensus         1 MG~giA~~~a-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~   79 (314)
T PRK08269          1 MGQGIALAFA-FAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD   79 (314)
T ss_pred             CcHHHHHHHH-hCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc
Confidence            5888999875 669999999998742      1   1111111111111222111        0111122  25688899


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~  300 (328)
                      ||+|+-++|-+.+.+.-+-.+..+.++++++|..++  +.+....|.+.++. +=+..++-.|.
T Consensus        80 aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSnt--S~~~~~~la~~~~~-p~r~~g~Hf~~  140 (314)
T PRK08269         80 ADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTT--STFLVTDLQRHVAH-PERFLNAHWLN  140 (314)
T ss_pred             CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEcc--ccCCHHHHHhhcCC-cccEEEEecCC
Confidence            999999999999999888888888899999995554  44667778777753 22334444443

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.24  E-value=0.019  Score=56.96  Aligned_cols=119  Identities=23%  Similarity=0.276  Sum_probs=72.5

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      ++.+|++.|+|.|.+|.++|+.| ...|++|.++|+......++..++    +...+..   .......++....+|+|+
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l-~~~G~~V~~~d~~~~~~~~~~~~~----l~~~~~~---~~~~~~~~~~~~~~d~vv   73 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFL-KKLGAKVILTDEKEEDQLKEALEE----LGELGIE---LVLGEYPEEFLEGVDLVV   73 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHH----HHhcCCE---EEeCCcchhHhhcCCEEE
Confidence            36789999999999999999998 589999999999753332221111    1111221   112223346678899998


Q ss_pred             EcCCCChhhhcc----------cc-HHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          242 LHPVLDKTTYHL----------IN-KERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       242 l~~plt~~t~~l----------i~-~~~~~~-mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      .+.-..+....+          +. -+.+.. .+...+-|--+.|..--.+-|...|+.
T Consensus        74 ~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         74 VSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            875433332211          11 111222 232344455577888888888888875

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.21  E-value=0.015  Score=52.54  Aligned_cols=107  Identities=23%  Similarity=0.199  Sum_probs=64.2

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HHH------------HHhhhhhhhhcCC-CCCccc
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK------------FVTAYGQFLKANG-EQPVTW  224 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~~~------------~~~~~~~~~~~~~-~~~~~~  224 (328)
                      ..|.+++|.|+|+|.+|.++|+.|+ ..|. ++..+|...-..  +..            ..+...+.+++-. ......
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~   95 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLA-AAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEA   95 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence            5689999999999999999999985 6777 687887653210  000            0000000000000 000000


Q ss_pred             c----ccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          225 K----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       225 ~----~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .    ...+++++++++|+|+.|+. +++++.++++...+.   +.-+|..+
T Consensus        96 ~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~ip~i~~g  143 (228)
T cd00757          96 YNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVKL---GKPLVSGA  143 (228)
T ss_pred             ecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEEE
Confidence            0    11345678999999999876 678888888776653   34455553

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.21  E-value=0.01  Score=49.44  Aligned_cols=85  Identities=21%  Similarity=0.255  Sum_probs=50.1

Q ss_pred             EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCC
Q 020301          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  247 (328)
Q Consensus       168 vgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt  247 (328)
                      +-|+|.|.+|+++++.+ +.+|++|.++|++++.                                +..++-+. +.+. 
T Consensus         1 L~I~GaG~va~al~~la-~~lg~~v~v~d~r~e~--------------------------------~~~~~~~~-~~~~-   45 (136)
T PF13478_consen    1 LVIFGAGHVARALARLA-ALLGFRVTVVDPRPER--------------------------------FPEADEVI-CIPP-   45 (136)
T ss_dssp             EEEES-STCHHHHHHHH-HHCTEEEEEEES-CCC---------------------------------TTSSEEE-CSHH-
T ss_pred             CEEEeCcHHHHHHHHHH-HhCCCEEEEEcCCccc--------------------------------cCCCCccE-ecCh-
Confidence            46899999999999985 8999999999986421                                12333322 2220 


Q ss_pred             hhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEE
Q 020301          248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG  295 (328)
Q Consensus       248 ~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaa  295 (328)
                      ++..     +.+ .+.++.++| ++++.-.|.++|.++|++. ..-.|
T Consensus        46 ~~~~-----~~~-~~~~~t~Vv-~th~h~~D~~~L~~~l~~~-~~YiG   85 (136)
T PF13478_consen   46 DDIL-----EDL-EIDPNTAVV-MTHDHELDAEALEAALASP-ARYIG   85 (136)
T ss_dssp             HHHH-----HHC--S-TT-EEE---S-CCCHHHHHHHHTTSS--SEEE
T ss_pred             HHHH-----hcc-CCCCCeEEE-EcCCchhHHHHHHHHHcCC-CCEEE
Confidence            1110     111 466677766 8899999999999999873 44333

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.20  E-value=0.018  Score=54.28  Aligned_cols=124  Identities=14%  Similarity=0.257  Sum_probs=63.8

Q ss_pred             EEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301          168 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (328)
Q Consensus       168 vgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl  246 (328)
                      |+|||.|.+|..+|..++ ..|. +|+.+|+++........+.. ......+ .........+.++ ++.||+|+++...
T Consensus         1 I~IIGaG~vG~~ia~~la-~~~l~eV~L~Di~e~~~~g~~~dl~-~~~~~~~-~~~~I~~t~d~~~-l~dADiVIit~g~   76 (300)
T cd01339           1 ISIIGAGNVGATLAQLLA-LKELGDVVLLDIVEGLPQGKALDIS-QAAPILG-SDTKVTGTNDYED-IAGSDVVVITAGI   76 (300)
T ss_pred             CEEECCCHHHHHHHHHHH-hCCCcEEEEEeCCCcHHHHHHHHHH-HhhhhcC-CCeEEEEcCCHHH-hCCCCEEEEecCC
Confidence            589999999999999864 3333 99999998643211111111 0000001 1112222245554 7999999987741


Q ss_pred             --Ch---------hhhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH--HcCCccEEE
Q 020301          247 --DK---------TTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHL--KQNPMFRVG  295 (328)
Q Consensus       247 --t~---------~t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL--~~g~i~gaa  295 (328)
                        .+         ++..++.  -+.+....|.+++|+++--.=+-...+.+..  ...++.|.+
T Consensus        77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg  140 (300)
T cd01339          77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA  140 (300)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence              11         1111110  1223334577888888733222233333332  123566666

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.18  E-value=0.0058  Score=54.94  Aligned_cols=136  Identities=21%  Similarity=0.281  Sum_probs=82.5

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhh----hhc-CCCCCcc-----------ccc
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF----LKA-NGEQPVT-----------WKR  226 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~----~~~-~~~~~~~-----------~~~  226 (328)
                      ..=+.|+|||.|.||+.+|+.. ..-|..|+.+|.+.+...+.. +..+..    +.. ....+..           ...
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~-a~sg~~V~l~d~~~~aL~~A~-~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~   86 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVA-ATSGLNVWLVDANEDALSRAT-KAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKT   86 (298)
T ss_pred             ccccceEEEcccccchhHHHHH-HhcCCceEEecCCHHHHHHHH-HHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHH
Confidence            4456799999999999999996 588999999999876432211 100111    111 1111111           122


Q ss_pred             cCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCC
Q 020301          227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY  304 (328)
Q Consensus       227 ~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~  304 (328)
                      .+++.++.+.+|.|+=.+--+-+.+.-+-++.=...|+.++|. |+|.   +-..++..+++. +-..+||-.|.+-|.
T Consensus        87 ~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~-~srf~GlHFfNPvPv  161 (298)
T KOG2304|consen   87 STNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQR-PSRFAGLHFFNPVPV  161 (298)
T ss_pred             cCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccC-hhhhceeeccCCchh
Confidence            4566777788888765544333333223233334467777765 5554   556778888876 456789998887773

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.17  E-value=0.02  Score=53.66  Aligned_cols=79  Identities=19%  Similarity=0.122  Sum_probs=51.9

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .+.|+++.|||.|-+|+.++..| ...|+ +|++++|+..+. ++..+.++.    ... ........++.+.+.++|+|
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL-~~~G~~~i~I~nRt~~ka-~~La~~~~~----~~~-~~~~~~~~~~~~~~~~~DiV  194 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYAL-ASLGVTDITVINRNPDKL-SRLVDLGVQ----VGV-ITRLEGDSGGLAIEKAAEVL  194 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHH-HHcCCCeEEEEeCCHHHH-HHHHHHhhh----cCc-ceeccchhhhhhcccCCCEE
Confidence            36789999999999999999997 57887 699999986432 333222211    000 00000012344667889999


Q ss_pred             EEcCCCC
Q 020301          241 SLHPVLD  247 (328)
Q Consensus       241 ~l~~plt  247 (328)
                      +.+.|..
T Consensus       195 InaTp~g  201 (282)
T TIGR01809       195 VSTVPAD  201 (282)
T ss_pred             EECCCCC
Confidence            9999964

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.16  E-value=0.027  Score=44.80  Aligned_cols=89  Identities=19%  Similarity=0.282  Sum_probs=54.0

Q ss_pred             EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH----hhcCCEEEEc
Q 020301          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVISLH  243 (328)
Q Consensus       168 vgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV~l~  243 (328)
                      +-|+|+|.+|+.+++.| +..+.+|++.|..+.... .        ++..+.. .-.....+.+.+    +++||.|++.
T Consensus         1 vvI~G~g~~~~~i~~~L-~~~~~~vvvid~d~~~~~-~--------~~~~~~~-~i~gd~~~~~~l~~a~i~~a~~vv~~   69 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQL-KEGGIDVVVIDRDPERVE-E--------LREEGVE-VIYGDATDPEVLERAGIEKADAVVIL   69 (116)
T ss_dssp             EEEES-SHHHHHHHHHH-HHTTSEEEEEESSHHHHH-H--------HHHTTSE-EEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred             eEEEcCCHHHHHHHHHH-HhCCCEEEEEECCcHHHH-H--------HHhcccc-cccccchhhhHHhhcCccccCEEEEc
Confidence            46999999999999998 566779999999875421 1        1222321 111122333332    6789999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEE
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILV  269 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lI  269 (328)
                      .+..  ..++.-...++.+.+...+|
T Consensus        70 ~~~d--~~n~~~~~~~r~~~~~~~ii   93 (116)
T PF02254_consen   70 TDDD--EENLLIALLARELNPDIRII   93 (116)
T ss_dssp             SSSH--HHHHHHHHHHHHHTTTSEEE
T ss_pred             cCCH--HHHHHHHHHHHHHCCCCeEE
Confidence            8833  34444445556555655555

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.14  E-value=0.0095  Score=58.00  Aligned_cols=74  Identities=26%  Similarity=0.323  Sum_probs=45.1

Q ss_pred             EEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCc--cccccCCHHHHhhcCCEEEEcC
Q 020301          168 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       168 vgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      |+|+|.|.+|+.+++.|++.... +|++.||+..... +..+.    .........  ......+|+++++++|+|+.|+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~-~~~~~----~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~   75 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAE-RLAEK----LLGDRVEAVQVDVNDPESLAELLRGCDVVINCA   75 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHH-HHHT------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHH-HHHhh----ccccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence            68999999999999998665567 9999999976421 11110    000011101  1111234788999999999999


Q ss_pred             CC
Q 020301          245 VL  246 (328)
Q Consensus       245 pl  246 (328)
                      |-
T Consensus        76 gp   77 (386)
T PF03435_consen   76 GP   77 (386)
T ss_dssp             SG
T ss_pred             cc
Confidence            83

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.13  E-value=0.0079  Score=58.45  Aligned_cols=36  Identities=25%  Similarity=0.418  Sum_probs=32.1

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .+||||||-|..|+.++..+ +.+|.+|+++|+++..
T Consensus         2 ~~~igilG~Gql~~ml~~aa-~~lG~~v~~~d~~~~~   37 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAA-APLGYKVIVLDPDPDS   37 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCCC
Confidence            47899999999999999984 7899999999998654

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.06  E-value=0.013  Score=53.07  Aligned_cols=77  Identities=19%  Similarity=0.244  Sum_probs=49.4

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH-hhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV~l~~  244 (328)
                      +++.|+|+|+.|+.+|+.| ...|..|+..|++.....+...+++....    ... .......|+++ +.++|+++...
T Consensus         1 m~iiIiG~G~vG~~va~~L-~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~----v~g-d~t~~~~L~~agi~~aD~vva~t   74 (225)
T COG0569           1 MKIIIIGAGRVGRSVAREL-SEEGHNVVLIDRDEERVEEFLADELDTHV----VIG-DATDEDVLEEAGIDDADAVVAAT   74 (225)
T ss_pred             CEEEEECCcHHHHHHHHHH-HhCCCceEEEEcCHHHHHHHhhhhcceEE----EEe-cCCCHHHHHhcCCCcCCEEEEee
Confidence            4789999999999999997 68999999999987643221111111000    000 00112245565 78899999888


Q ss_pred             CCCh
Q 020301          245 VLDK  248 (328)
Q Consensus       245 plt~  248 (328)
                      ..+.
T Consensus        75 ~~d~   78 (225)
T COG0569          75 GNDE   78 (225)
T ss_pred             CCCH
Confidence            7433

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.06  E-value=0.021  Score=57.07  Aligned_cols=96  Identities=15%  Similarity=0.161  Sum_probs=63.0

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .+|.|++|.|||.|.++..=++.| ..+|++|.++.|...+...+...        .+.  ..+....-.++.+..+++|
T Consensus         8 ~~l~~~~vlvvGgG~vA~rk~~~l-l~~ga~v~visp~~~~~~~~l~~--------~~~--i~~~~~~~~~~dl~~~~lv   76 (457)
T PRK10637          8 CQLRDRDCLLVGGGDVAERKARLL-LDAGARLTVNALAFIPQFTAWAD--------AGM--LTLVEGPFDESLLDTCWLA   76 (457)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHh--------CCC--EEEEeCCCChHHhCCCEEE
Confidence            579999999999999999988877 47999999999876654433211        111  1111111123557889988


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      +.+....+     +|+...+..+...+++|++
T Consensus        77 ~~at~d~~-----~n~~i~~~a~~~~~lvN~~  103 (457)
T PRK10637         77 IAATDDDA-----VNQRVSEAAEARRIFCNVV  103 (457)
T ss_pred             EECCCCHH-----HhHHHHHHHHHcCcEEEEC
Confidence            88866332     5555555565555667764

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.06  E-value=0.0091  Score=49.94  Aligned_cols=121  Identities=17%  Similarity=0.164  Sum_probs=71.0

Q ss_pred             EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCC-CCCccccc-cCCHHHHhhcCCEEEEcCC
Q 020301          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKR-ASSMDEVLREADVISLHPV  245 (328)
Q Consensus       168 vgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~l~ell~~aDiV~l~~p  245 (328)
                      |+|+|.|.||.-+|-+|+ .-|.+|..+++...  .+. ....+-...... ........ ..+..+-...+|+|++|+.
T Consensus         1 I~I~G~GaiG~~~a~~L~-~~g~~V~l~~r~~~--~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLA-QAGHDVTLVSRSPR--LEA-IKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEESTSHHHHHHHHHHH-HTTCEEEEEESHHH--HHH-HHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred             CEEECcCHHHHHHHHHHH-HCCCceEEEEcccc--HHh-hhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence            689999999999999984 58999999998761  121 111111111111 00000001 1112346788999999987


Q ss_pred             CChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEE
Q 020301          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG  295 (328)
Q Consensus       246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaa  295 (328)
                       ..++...+.. .-...++++.++-.--| +-.++.|.+.+...++.++.
T Consensus        77 -a~~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~  123 (151)
T PF02558_consen   77 -AYQLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV  123 (151)
T ss_dssp             -GGGHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred             -ccchHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence             3455555543 44555677677766555 45567777777555665544

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.05  E-value=0.047  Score=53.18  Aligned_cols=98  Identities=20%  Similarity=0.220  Sum_probs=60.4

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch------------------hHHHHHHhhhhhhhhcCCCCC
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQP  221 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~  221 (328)
                      ..|.+++|.|+|.|.+|..+|+.|+ ..|. ++..+|+..-                  .+.+...+.+.+.   .....
T Consensus       131 ~~l~~~~VlvvG~GG~Gs~ia~~La-~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~---np~v~  206 (376)
T PRK08762        131 RRLLEARVLLIGAGGLGSPAALYLA-AAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAAL---NPDVQ  206 (376)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHH---CCCCE
Confidence            4689999999999999999999984 7787 6888888621                  1111111111000   01000


Q ss_pred             c-cc-c--ccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCC
Q 020301          222 V-TW-K--RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (328)
Q Consensus       222 ~-~~-~--~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk  263 (328)
                      . .. .  ...+++++++++|+|+.|+- +.+++.++|+...+.-+
T Consensus       207 v~~~~~~~~~~~~~~~~~~~D~Vv~~~d-~~~~r~~ln~~~~~~~i  251 (376)
T PRK08762        207 VEAVQERVTSDNVEALLQDVDVVVDGAD-NFPTRYLLNDACVKLGK  251 (376)
T ss_pred             EEEEeccCChHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence            0 00 0  11245678899999888765 56788888776655433

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.96  E-value=0.029  Score=50.73  Aligned_cols=95  Identities=11%  Similarity=0.047  Sum_probs=59.5

Q ss_pred             ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcccc-ccCCHHHHhhcCC
Q 020301          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREAD  238 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  238 (328)
                      .-.+.|++|.|||.|.++..=++.| ..+|++|.++.|...+...+...        .+.  ..+. +..+. +-+..++
T Consensus        20 ~l~~~~~~VLVVGGG~VA~RK~~~L-l~~gA~VtVVap~i~~el~~l~~--------~~~--i~~~~r~~~~-~dl~g~~   87 (223)
T PRK05562         20 SLLSNKIKVLIIGGGKAAFIKGKTF-LKKGCYVYILSKKFSKEFLDLKK--------YGN--LKLIKGNYDK-EFIKDKH   87 (223)
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCCCHHHHHHHh--------CCC--EEEEeCCCCh-HHhCCCc
Confidence            3567899999999999999988876 47999999999987665443211        111  1111 11232 3457889


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~  271 (328)
                      +|+.+... ++    +|+...+..+...+++|+
T Consensus        88 LViaATdD-~~----vN~~I~~~a~~~~~lvn~  115 (223)
T PRK05562         88 LIVIATDD-EK----LNNKIRKHCDRLYKLYID  115 (223)
T ss_pred             EEEECCCC-HH----HHHHHHHHHHHcCCeEEE
Confidence            88888662 22    444444444443344554

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=95.96  E-value=0.039  Score=52.15  Aligned_cols=108  Identities=19%  Similarity=0.292  Sum_probs=61.9

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      ++|+|||.|.+|+.+|..| ...|  -+|..+|+..... +.....+.......+ .... ....+.+ .++.||+|+++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l-~~~g~~~ei~l~D~~~~~~-~~~a~dL~~~~~~~~-~~~~-i~~~~~~-~l~~aDIVIit   75 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSL-VNQGIADELVLIDINEEKA-EGEALDLEDALAFLP-SPVK-IKAGDYS-DCKDADIVVIT   75 (306)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCcchh-hHhHhhHHHHhhccC-CCeE-EEcCCHH-HhCCCCEEEEc
Confidence            4799999999999999987 4667  4899999976542 221111100000000 0001 1123444 47999999998


Q ss_pred             CCCChh---hh--------cccc--HHHHhcCCCCcEEEEcCCCcccCHH
Q 020301          244 PVLDKT---TY--------HLIN--KERLATMKKEAILVNCSRGPVIDEV  280 (328)
Q Consensus       244 ~plt~~---t~--------~li~--~~~~~~mk~ga~lIN~aRG~~vde~  280 (328)
                      ......   ++        .++.  .+.+.+..|.+++|+++  ..+|.-
T Consensus        76 ag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d~~  123 (306)
T cd05291          76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVDVI  123 (306)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHHHH
Confidence            874211   11        1111  22344556789999996  445433

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=95.95  E-value=0.07  Score=53.04  Aligned_cols=123  Identities=19%  Similarity=0.160  Sum_probs=68.0

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCC-------c--hhHH---HHHHhhhhhhhhcCCCCCcccccc
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY-------Q--ATRL---EKFVTAYGQFLKANGEQPVTWKRA  227 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~-------~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  227 (328)
                      .++.|+|+.|=|+|++|+..|+.| ..+|++|+ +.|.+       -  .+.+   .++..........-.....+.. +
T Consensus       233 ~~l~Gk~VaVqG~GnVg~~aa~~L-~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~-~  310 (454)
T PTZ00079        233 DSLEGKTVVVSGSGNVAQYAVEKL-LQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAK-Y  310 (454)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcE-E
Confidence            579999999999999999999997 68999999 44444       0  1111   0000000000000000000111 1


Q ss_pred             CCHHHHh-hcCCEEEEcCCCChhhhccccHHHHhcC-CCCc-EEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          228 SSMDEVL-READVISLHPVLDKTTYHLINKERLATM-KKEA-ILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       228 ~~l~ell-~~aDiV~l~~plt~~t~~li~~~~~~~m-k~ga-~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      .+-++++ -.||+++-|     .|.+.|+.+..+.+ +.++ +++--|-+++-. +|- +.|++..|.
T Consensus       311 ~~~~~~~~~~cDI~iPc-----A~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~-eA~-~~L~~~GI~  371 (454)
T PTZ00079        311 VPGKKPWEVPCDIAFPC-----ATQNEINLEDAKLLIKNGCKLVAEGANMPTTI-EAT-HLFKKNGVI  371 (454)
T ss_pred             eCCcCcccCCccEEEec-----cccccCCHHHHHHHHHcCCeEEEecCCCCCCH-HHH-HHHHHCCcE
Confidence            1222332 469999766     46888988887766 4444 444556666544 433 455555443

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.93  E-value=0.02  Score=62.34  Aligned_cols=75  Identities=21%  Similarity=0.279  Sum_probs=47.9

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcE-------------EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-------------LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (328)
                      ..|+|+|||.|.||+..|+.|++.-+.+             |.+.|++.... ++..+.|      .+...... .+.+.
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a-~~la~~~------~~~~~v~l-Dv~D~  639 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDA-KETVEGI------ENAEAVQL-DVSDS  639 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHH-HHHHHhc------CCCceEEe-ecCCH
Confidence            4779999999999999999986444444             88899886542 2222111      01111111 12344


Q ss_pred             H---HHhhcCCEEEEcCCC
Q 020301          231 D---EVLREADVISLHPVL  246 (328)
Q Consensus       231 ~---ell~~aDiV~l~~pl  246 (328)
                      +   ++++++|+|++++|.
T Consensus       640 e~L~~~v~~~DaVIsalP~  658 (1042)
T PLN02819        640 ESLLKYVSQVDVVISLLPA  658 (1042)
T ss_pred             HHHHHhhcCCCEEEECCCc
Confidence            4   445789999999994

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.93  E-value=0.024  Score=55.91  Aligned_cols=35  Identities=29%  Similarity=0.259  Sum_probs=31.2

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .+++.|||+|.+|+++|+.| +..|.+|.++|++..
T Consensus         3 ~~~i~iiGlG~~G~slA~~l-~~~G~~V~g~D~~~~   37 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFL-AQKGVYVIGVDKSLE   37 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence            46899999999999999997 689999999998754

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=95.92  E-value=0.044  Score=56.57  Aligned_cols=133  Identities=17%  Similarity=0.206  Sum_probs=76.9

Q ss_pred             CCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCccc-ccccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEc
Q 020301          119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV-GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYD  196 (328)
Q Consensus       119 ~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~-~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d  196 (328)
                      .....||.++-|=|-+.|                |+-.... ...|.+.+|.|+|.|.+|..+|+.| .+.|. ++..+|
T Consensus       307 dP~~la~~avdlnlkLmk----------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~L-a~~GVg~ItlVD  369 (664)
T TIGR01381       307 DPKRLAERSVDLNLKLMK----------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCL-IGWGVRHITFVD  369 (664)
T ss_pred             CHHHHHHHHHHHHHHHHh----------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHH-HHcCCCeEEEEc
Confidence            344567777766665543                3322111 2568999999999999999999998 48887 577777


Q ss_pred             CCchh----------HHHH-------HHhhhhhhhhcC--CCC--Ccccc------------------ccCCHHHHhhcC
Q 020301          197 LYQAT----------RLEK-------FVTAYGQFLKAN--GEQ--PVTWK------------------RASSMDEVLREA  237 (328)
Q Consensus       197 ~~~~~----------~~~~-------~~~~~~~~~~~~--~~~--~~~~~------------------~~~~l~ell~~a  237 (328)
                      ...-.          ..+.       ....-.+.+++-  +..  .....                  ....++++++++
T Consensus       370 ~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~  449 (664)
T TIGR01381       370 NGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDH  449 (664)
T ss_pred             CCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhC
Confidence            53210          0000       000000000100  000  00000                  012467899999


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      |+|+.|+- +.++|.+++......-   ..+||.+
T Consensus       450 DvV~d~tD-n~esR~L~n~~c~~~~---kplI~aA  480 (664)
T TIGR01381       450 DVVFLLLD-SREARWLPTVLCSRHK---KIAISAA  480 (664)
T ss_pred             CEEEECCC-CHHHHHHHHHHHHHhC---CCEEEEE
Confidence            99999986 7899998887766543   3455544

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.90  E-value=0.047  Score=53.79  Aligned_cols=89  Identities=19%  Similarity=0.265  Sum_probs=62.7

Q ss_pred             ccCCCEEEEEec----------CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHH
Q 020301          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (328)
Q Consensus       162 ~l~g~tvgIiG~----------G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (328)
                      .+.|++|+|+|+          .+-...+++.| ...|++|.+|||........   .              .....+++
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L-~~~g~~v~~~DP~~~~~~~~---~--------------~~~~~~~~  371 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELL-KEKGAKVKAYDPLVPEEEVK---G--------------LPLIDDLE  371 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChhhhh---h--------------cccCCCHH
Confidence            478999999998          45677899997 58899999999986432110   0              01236889


Q ss_pred             HHhhcCCEEEEcCCCChhhhccccHHHHhc-CCCCcEEEEc
Q 020301          232 EVLREADVISLHPVLDKTTYHLINKERLAT-MKKEAILVNC  271 (328)
Q Consensus       232 ell~~aDiV~l~~plt~~t~~li~~~~~~~-mk~ga~lIN~  271 (328)
                      +.++.||.|+++.+ -++.+. ++-+.+.. |+ ..+++++
T Consensus       372 ~~~~~ad~~v~~t~-~~~~~~-~~~~~~~~~~~-~~~v~D~  409 (411)
T TIGR03026       372 EALKGADALVILTD-HDEFKD-LDLEKIKDLMK-GKVVVDT  409 (411)
T ss_pred             HHHhCCCEEEEecC-CHHHhc-cCHHHHHHhcC-CCEEEeC
Confidence            99999999999987 344444 45444444 55 5577774

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.86  E-value=0.023  Score=54.66  Aligned_cols=97  Identities=21%  Similarity=0.193  Sum_probs=61.8

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh--------------------HHHHHHhhhhhhhhcC-C
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--------------------RLEKFVTAYGQFLKAN-G  218 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~--------------------~~~~~~~~~~~~~~~~-~  218 (328)
                      ..|..++|.|||.|.+|..+|+.|+ ..|. ++..+|...-+                    +.+...+    .+++- .
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~----~l~~inp   94 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLV-RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKK----RLEEINS   94 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHH----HHHHHCC
Confidence            4699999999999999999999985 6787 89999985310                    0000000    01100 0


Q ss_pred             CCCccc----cccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCC
Q 020301          219 EQPVTW----KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (328)
Q Consensus       219 ~~~~~~----~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk  263 (328)
                      ......    ....++.++++.+|+|+.+.- +.+++.++|+...+.=+
T Consensus        95 ~v~v~~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~~~i  142 (339)
T PRK07688         95 DVRVEAIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQKYGI  142 (339)
T ss_pred             CcEEEEEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHHhCC
Confidence            000000    012346788999999988865 67888888877665433

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=95.81  E-value=0.22  Score=52.65  Aligned_cols=165  Identities=21%  Similarity=0.286  Sum_probs=108.7

Q ss_pred             hCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHh
Q 020301          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (328)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~  186 (328)
                      +..|+|.|+--   +.+|=-+++-+++.+|-                     .|..+...++.|.|.|.-|-.+|+.| .
T Consensus       151 ~~~ip~f~DD~---~GTa~v~lA~l~na~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~  205 (752)
T PRK07232        151 RMDIPVFHDDQ---HGTAIISAAALLNALEL---------------------VGKKIEDVKIVVSGAGAAAIACLNLL-V  205 (752)
T ss_pred             hcCCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECccHHHHHHHHHH-H
Confidence            34688888733   34566777777776662                     24578889999999999999999997 5


Q ss_pred             cCCc---EEEEEcCCch---hH---HHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHH
Q 020301          187 GFKM---NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE  257 (328)
Q Consensus       187 ~fg~---~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~  257 (328)
                      ..|.   +++.+|+.--   .+   ...+...|.   +.        ....+|.|+++.+|+++=. .    +.++|+++
T Consensus       206 ~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a---~~--------~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~  269 (752)
T PRK07232        206 ALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYA---VD--------TDARTLAEAIEGADVFLGL-S----AAGVLTPE  269 (752)
T ss_pred             HcCCCcccEEEEcCCCeecCCCcccccHHHHHHh---cc--------CCCCCHHHHHcCCCEEEEc-C----CCCCCCHH
Confidence            6788   7999986521   00   111111221   11        1235899999999988643 2    25899999


Q ss_pred             HHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCC
Q 020301          258 RLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  322 (328)
Q Consensus       258 ~~~~mk~ga~lIN~aRG~~-vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia  322 (328)
                      .++.|.+..++.=.|.... +..+..+++ ..|.|.+-|-   ...|      -+..|+++-|-++
T Consensus       270 ~v~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atGr---s~~p------nQ~NN~~~FPgi~  325 (752)
T PRK07232        270 MVKSMADNPIIFALANPDPEITPEEAKAV-RPDAIIATGR---SDYP------NQVNNVLCFPYIF  325 (752)
T ss_pred             HHHHhccCCEEEecCCCCccCCHHHHHHh-cCCEEEEECC---cCCC------Ccccceeecchhh
Confidence            9999999999999988765 233333333 2245655551   1122      2356888887654

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.75  E-value=0.093  Score=52.77  Aligned_cols=115  Identities=16%  Similarity=0.137  Sum_probs=71.6

Q ss_pred             ccCCCEEEEEec----------CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhh----hhhcCC------CCC
Q 020301          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ----FLKANG------EQP  221 (328)
Q Consensus       162 ~l~g~tvgIiG~----------G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~----~~~~~~------~~~  221 (328)
                      .+.|++|+|+|+          .+-...+++.| ...|.+|.+|||........  ..|+.    |.....      ..+
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L-~~~G~~V~~~DP~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  397 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGL-LGDKAKLSIYDPQVTEEQIQ--RDLSMNKFDWDHPRHLQPMSPTAV  397 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChHHHH--HHhhcccccccccccccccccccc
Confidence            589999999998          56778899997 58899999999985431110  01100    000000      000


Q ss_pred             ccccccCCHHHHhhcCCEEEEcCCCChhhhccccHH-HHhcCCCCcEEEEcCCCcccCHHHHH
Q 020301          222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEAILVNCSRGPVIDEVALV  283 (328)
Q Consensus       222 ~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~-~~~~mk~ga~lIN~aRG~~vde~aL~  283 (328)
                      .......++++.++.||+|+++.+- ++.+. ++-+ ..+.|++..+++|. |+ ++|.+.+.
T Consensus       398 ~~~~~~~~~~~a~~~aD~vvi~t~~-~ef~~-l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~  456 (473)
T PLN02353        398 KQVSVVWDAYEATKGAHGICILTEW-DEFKT-LDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR  456 (473)
T ss_pred             cceeeeCCHHHHhcCCCEEEECCCC-hHhcc-cCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence            0112234677899999999999873 44444 3433 35668766688986 43 56766654

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=95.75  E-value=0.062  Score=50.78  Aligned_cols=96  Identities=14%  Similarity=0.155  Sum_probs=57.5

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-----cCC
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD  238 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~aD  238 (328)
                      ..++||||.|.||+..+..+.+.-++++. ++|++++.....+.       ++.|..    ..+.+.+++++     +.|
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A-------~~~Gi~----~~~~~ie~LL~~~~~~dID   72 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA-------RRLGVA----TSAEGIDGLLAMPEFDDID   72 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH-------HHcCCC----cccCCHHHHHhCcCCCCCC
Confidence            35799999999999977765444466765 56776543211111       111211    12367889885     578


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC---CCcc
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCS---RGPV  276 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a---RG~~  276 (328)
                      +|+.+.|.  ++..   +-.....+.|..+|+-+   +|++
T Consensus        73 iVf~AT~a--~~H~---e~a~~a~eaGk~VID~sPA~~~Pl  108 (302)
T PRK08300         73 IVFDATSA--GAHV---RHAAKLREAGIRAIDLTPAAIGPY  108 (302)
T ss_pred             EEEECCCH--HHHH---HHHHHHHHcCCeEEECCccccCCc
Confidence            89999883  2222   22223346788888775   5555

>PRK06444 prephenate dehydrogenase; Provisional

Probab=95.74  E-value=0.016  Score=51.38  Aligned_cols=59  Identities=19%  Similarity=0.318  Sum_probs=43.2

Q ss_pred             EEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       167 tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      +++|||- |.+|+.+++.+ +..|..|.                                        +++||+|++|+|
T Consensus         2 ~~~iiG~~G~mG~~~~~~~-~~~g~~v~----------------------------------------~~~~DlVilavP   40 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSIL-DDNGLGVY----------------------------------------IKKADHAFLSVP   40 (197)
T ss_pred             EEEEEecCCcHHHHHHHHH-HhCCCEEE----------------------------------------ECCCCEEEEeCC
Confidence            7899999 99999999997 67887773                                        357899999999


Q ss_pred             CChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          246 LDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      - ..+..++     +.+.  .++++++.-
T Consensus        41 v-~~~~~~i-----~~~~--~~v~Dv~Sv   61 (197)
T PRK06444         41 I-DAALNYI-----ESYD--NNFVEISSV   61 (197)
T ss_pred             H-HHHHHHH-----HHhC--CeEEecccc
Confidence            3 2333333     3333  368888663

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.74  E-value=0.018  Score=48.20  Aligned_cols=106  Identities=21%  Similarity=0.374  Sum_probs=60.2

Q ss_pred             EEEEEec-CHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          167 TVGVIGA-GRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       167 tvgIiG~-G~IG~~vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      +|+|||. |.+|+.+|-.|. ++++-++..+|+..........+ +......   ............+.++.||+|+++.
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~D-l~~~~~~---~~~~~~i~~~~~~~~~~aDivvita   77 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALD-LSHASAP---LPSPVRITSGDYEALKDADIVVITA   77 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH-HHHHHHG---STEEEEEEESSGGGGTTESEEEETT
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehh-hhhhhhh---cccccccccccccccccccEEEEec
Confidence            7999999 999999998764 36677899999986432111111 1110000   0011111225567789999999987


Q ss_pred             C--CCh-hhh-ccc--c-------HHHHhcCCCCcEEEEcCCCcccC
Q 020301          245 V--LDK-TTY-HLI--N-------KERLATMKKEAILVNCSRGPVID  278 (328)
Q Consensus       245 p--lt~-~t~-~li--~-------~~~~~~mk~ga~lIN~aRG~~vd  278 (328)
                      -  ..+ +++ .++  |       .+.+.+..|.++++.++  ..+|
T Consensus        78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt--NPvd  122 (141)
T PF00056_consen   78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT--NPVD  122 (141)
T ss_dssp             STSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S--SSHH
T ss_pred             cccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC--CcHH
Confidence            3  333 222 111  1       12333445788888884  3455

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.73  E-value=0.041  Score=49.31  Aligned_cols=97  Identities=20%  Similarity=0.248  Sum_probs=58.6

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh-----------------HHHHHHhhhhhhhhcC-CCCC
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT-----------------RLEKFVTAYGQFLKAN-GEQP  221 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~-----------------~~~~~~~~~~~~~~~~-~~~~  221 (328)
                      ..|..++|.|||.|.+|..+|+.|+ ..|. ++..+|...-.                 +.+.....    +++- ....
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~----l~~lnp~v~   98 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALA-RSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKEN----LLEINPFVE   98 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHH----HHHHCCCCE
Confidence            4689999999999999999999985 5676 48888876210                 00000000    0000 0000


Q ss_pred             ccc--c--ccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCC
Q 020301          222 VTW--K--RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (328)
Q Consensus       222 ~~~--~--~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk  263 (328)
                      ...  .  ...+++++++++|+|+.|+- +.+++..++....+..+
T Consensus        99 v~~~~~~i~~~~~~~~~~~~DvVI~a~D-~~~~r~~l~~~~~~~~~  143 (212)
T PRK08644         99 IEAHNEKIDEDNIEELFKDCDIVVEAFD-NAETKAMLVETVLEHPG  143 (212)
T ss_pred             EEEEeeecCHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHHhCC
Confidence            000  0  11235578899999988864 66777777766555433

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=95.73  E-value=0.048  Score=50.60  Aligned_cols=73  Identities=18%  Similarity=0.238  Sum_probs=44.5

Q ss_pred             EEEEEe-cCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       167 tvgIiG-~G~IG~~vA~~l~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      +|+|+| +|+||+.+++.+...-++++.+ +|+...........      +..+..+.+...+.+++++...+|+|+.+.
T Consensus         3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~------~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT   76 (266)
T TIGR00036         3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAG------ELAGIGKVGVPVTDDLEAVETDPDVLIDFT   76 (266)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHH------HhcCcCcCCceeeCCHHHhcCCCCEEEECC
Confidence            799999 7999999999875456888665 66432211000000      001111122333468888866799999987


Q ss_pred             C
Q 020301          245 V  245 (328)
Q Consensus       245 p  245 (328)
                      |
T Consensus        77 ~   77 (266)
T TIGR00036        77 T   77 (266)
T ss_pred             C
Confidence            6

>PRK12862 malic enzyme; Reviewed

Probab=95.72  E-value=0.32  Score=51.75  Aligned_cols=164  Identities=19%  Similarity=0.254  Sum_probs=108.2

Q ss_pred             CCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhc
Q 020301          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG  187 (328)
Q Consensus       108 ~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~  187 (328)
                      .+|++.|+--   +.+|=.+++-+++.+|-                     .|..+...++.|.|.|.-|-.+|+.| ..
T Consensus       160 ~~ip~f~DD~---~GTa~v~la~l~~a~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~~  214 (763)
T PRK12862        160 MKIPVFHDDQ---HGTAIIVAAALLNGLKL---------------------VGKDIEDVKLVASGAGAAALACLDLL-VS  214 (763)
T ss_pred             CCCceEecCc---ccHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEEChhHHHHHHHHHH-HH
Confidence            3689998733   34566777778876662                     24578889999999999999999997 46


Q ss_pred             CCc---EEEEEcCCch-----hH-HHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHH
Q 020301          188 FKM---NLIYYDLYQA-----TR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (328)
Q Consensus       188 fg~---~V~~~d~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~  258 (328)
                      .|.   +++.+|+.--     +. ...+...|.   +..        ...+|.|+++.+|+++=.-     +.++|+++.
T Consensus       215 ~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a---~~~--------~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~  278 (763)
T PRK12862        215 LGVKRENIWVTDIKGVVYEGRTELMDPWKARYA---QKT--------DARTLAEVIEGADVFLGLS-----AAGVLKPEM  278 (763)
T ss_pred             cCCCcccEEEEcCCCeeeCCCCccccHHHHHHh---hhc--------ccCCHHHHHcCCCEEEEcC-----CCCCCCHHH
Confidence            788   7999995410     00 111111221   111        1258999999999986431     258999999


Q ss_pred             HhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCC
Q 020301          259 LATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  322 (328)
Q Consensus       259 ~~~mk~ga~lIN~aRG~~-vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia  322 (328)
                      ++.|.+..++.=.|.-.. +..+..+++ ..|.|.+.|-.   ..|      -+..|+++-|-++
T Consensus       279 v~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atGrs---~~p------~Q~NN~~~FPgi~  333 (763)
T PRK12862        279 VKKMAPRPLIFALANPTPEILPEEARAV-RPDAIIATGRS---DYP------NQVNNVLCFPYIF  333 (763)
T ss_pred             HHHhccCCEEEeCCCCcccCCHHHHHHh-cCCEEEEECCc---CCC------Ccccceeeccchh
Confidence            999999999999988664 122333333 22455555511   112      2357888888664

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.72  E-value=0.032  Score=51.16  Aligned_cols=106  Identities=20%  Similarity=0.243  Sum_probs=63.3

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HHH------------HHhhhhhhhhcCC-CCCcc-
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK------------FVTAYGQFLKANG-EQPVT-  223 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~~~------------~~~~~~~~~~~~~-~~~~~-  223 (328)
                      ..|..++|+|||.|.+|..+|+.|+ ..|. ++..+|...-..  +..            ..+...+.+++-. ..... 
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~  106 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLA-AAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIET  106 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEE
Confidence            5699999999999999999999985 5675 688887653210  000            0000000011000 00000 


Q ss_pred             c-cc--cCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301          224 W-KR--ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       224 ~-~~--~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~  271 (328)
                      . ..  ..+++++++++|+|+.|+- +.+++..+++...+..+|   +|..
T Consensus       107 ~~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~ip---~v~~  153 (245)
T PRK05690        107 INARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAAKKP---LVSG  153 (245)
T ss_pred             EeccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHhCCE---EEEe
Confidence            0 01  1235678999999998874 778888888877765443   5554

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=95.69  E-value=0.09  Score=50.55  Aligned_cols=115  Identities=14%  Similarity=0.183  Sum_probs=71.5

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .+.|.+|+++|= .++.++++..+ ..||++|.++.|..-...+...+.-...+...|   .......++++.+++||+|
T Consensus       151 ~l~glkv~~vGD~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~eav~~aDvv  226 (338)
T PRK02255        151 KLEDCKVVFVGDATQVCVSLMFIA-TKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSG---GSVLVTDDVDEAVKDADFV  226 (338)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HhCCCEEEEECCCccccCHHHHHHHHHHHHhcC---CeEEEEcCHHHHhCCCCEE
Confidence            588999999997 57888888876 589999999987632111111110000001111   1123347999999999999


Q ss_pred             EEcC-----CCCh--hh-------hccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 020301          241 SLHP-----VLDK--TT-------YHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (328)
Q Consensus       241 ~l~~-----plt~--~t-------~~li~~~~~~~mk~ga~lIN~a---RG~~vde~  280 (328)
                      ..-.     ....  +.       .--++++.++.+|+++++.-+.   ||.=|+.+
T Consensus       227 y~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP~~Rg~Eis~~  283 (338)
T PRK02255        227 YTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLPATRGEEVTDE  283 (338)
T ss_pred             EEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCCCCcCCceecHH
Confidence            8722     2100  11       2457899999999998887763   65544433

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=95.67  E-value=0.16  Score=50.27  Aligned_cols=102  Identities=14%  Similarity=0.246  Sum_probs=67.6

Q ss_pred             ccCCCEEEEEecC---HHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301          162 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (328)
Q Consensus       162 ~l~g~tvgIiG~G---~IG~~vA~~l~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (328)
                      .+.|+||+++|-+   ++..+++..+ ..| ||+|.+..|..-...++..+.    ++..|   .......++++.++.|
T Consensus       238 ~l~G~kIa~vGD~~~~rv~~Sl~~~l-a~~~G~~v~l~~P~~~~~~~~~~~~----~~~~G---~~v~~~~d~~eav~~A  309 (429)
T PRK11891        238 IVDGAHIALVGDLKYGRTVHSLVKLL-ALYRGLKFTLVSPPTLEMPAYIVEQ----ISRNG---HVIEQTDDLAAGLRGA  309 (429)
T ss_pred             CcCCCEEEEECcCCCChHHHHHHHHH-HHhcCCEEEEECCCccccCHHHHHH----HHhcC---CeEEEEcCHHHHhCCC
Confidence            4889999999994   8899999886 465 999999887542211222111    11112   1223357999999999


Q ss_pred             CEEEEcCCCChh----------hhccccHHHHhc-CCCCcEEEEc
Q 020301          238 DVISLHPVLDKT----------TYHLINKERLAT-MKKEAILVNC  271 (328)
Q Consensus       238 DiV~l~~plt~~----------t~~li~~~~~~~-mk~ga~lIN~  271 (328)
                      |+|....-..+.          ..--++++.++. .|+++++.-+
T Consensus       310 DVVYt~~~q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHc  354 (429)
T PRK11891        310 DVVYATRIQKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHP  354 (429)
T ss_pred             CEEEEcCchhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECC
Confidence            999874421111          013468899998 8999988854

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=95.63  E-value=0.058  Score=52.68  Aligned_cols=115  Identities=18%  Similarity=0.246  Sum_probs=73.5

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh----------HHHHHHhhhhhhhhcCCCCCccccccCCH
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT----------RLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (328)
                      .++.|+||.|=|+|+.|+..|+.| ...|++|+++|-+...          .+.+..+..+.....     .+... .+-
T Consensus       203 ~~l~G~rVaVQG~GNVg~~aa~~l-~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~-----~ga~~-i~~  275 (411)
T COG0334         203 DDLEGARVAVQGFGNVGQYAAEKL-HELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEY-----AGAEY-ITN  275 (411)
T ss_pred             CCcCCCEEEEECccHHHHHHHHHH-HHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhh-----cCceE-ccc
Confidence            359999999999999999999997 5779999999876540          000000000000000     01112 233


Q ss_pred             HHHhh-cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          231 DEVLR-EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       231 ~ell~-~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      ++++. .|||++-|     .+.+.|+.+...++|-. +++-.+-|++- .+|--..++.|
T Consensus       276 ~e~~~~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erG  328 (411)
T COG0334         276 EELLEVDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERG  328 (411)
T ss_pred             cccccccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCC
Confidence            55544 69998644     66889999999999876 78888888865 33333333555

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.63  E-value=0.082  Score=50.37  Aligned_cols=95  Identities=15%  Similarity=0.184  Sum_probs=61.3

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh---cCCE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADV  239 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDi  239 (328)
                      .|++|.|+|.|.+|...++.+ +..|+ +|++.++++...  +...       +-|....-.....+++++..   ..|+
T Consensus       169 ~g~~VlV~G~G~vG~~aiqla-k~~G~~~Vi~~~~~~~~~--~~a~-------~lGa~~vi~~~~~~~~~~~~~~g~~D~  238 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAV-KTLGAAEIVCADVSPRSL--SLAR-------EMGADKLVNPQNDDLDHYKAEKGYFDV  238 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEEeCCHHHH--HHHH-------HcCCcEEecCCcccHHHHhccCCCCCE
Confidence            589999999999999999984 89999 688888775432  1212       22321111111123444433   2799


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      ++-+... +++    -...++.++++..++.++.
T Consensus       239 vid~~G~-~~~----~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        239 SFEVSGH-PSS----INTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             EEECCCC-HHH----HHHHHHHhhcCCEEEEEcc
Confidence            9888662 221    2456788999999999875

>PRK11579 putative oxidoreductase; Provisional

Probab=95.62  E-value=0.043  Score=52.64  Aligned_cols=66  Identities=17%  Similarity=0.153  Sum_probs=43.9

Q ss_pred             CEEEEEecCHHHHH-HHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEE
Q 020301          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~~-vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  241 (328)
                      -++||||+|.||+. .+..+.+.-++++. ++|++.....    +.|       +    ....+.+++++++  .-|+|+
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~----~~~-------~----~~~~~~~~~ell~~~~vD~V~   69 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK----ADW-------P----TVTVVSEPQHLFNDPNIDLIV   69 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH----hhC-------C----CCceeCCHHHHhcCCCCCEEE
Confidence            37999999999985 45654333478876 4677653211    111       0    1123579999996  479999


Q ss_pred             EcCCC
Q 020301          242 LHPVL  246 (328)
Q Consensus       242 l~~pl  246 (328)
                      +|.|.
T Consensus        70 I~tp~   74 (346)
T PRK11579         70 IPTPN   74 (346)
T ss_pred             EcCCc
Confidence            99994

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=95.62  E-value=0.1  Score=49.33  Aligned_cols=111  Identities=25%  Similarity=0.330  Sum_probs=72.0

Q ss_pred             ccCCCEEEEEecC---HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       162 ~l~g~tvgIiG~G---~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      .+.|++|+++|-|   ++.++++..+ ..||++|.+..|..-...++..+    .++..|   .......++++.++.||
T Consensus       147 ~l~g~~va~vGD~~~~~v~~Sl~~~~-a~~g~~v~~~~P~~~~~~~~~~~----~~~~~G---~~v~~~~d~~~a~~~aD  218 (301)
T TIGR00670       147 RLDGLKIALVGDLKYGRTVHSLAEAL-TRFGVEVYLISPEELRMPKEILE----ELKAKG---IKVRETESLEEVIDEAD  218 (301)
T ss_pred             CCCCCEEEEEccCCCCcHHHHHHHHH-HHcCCEEEEECCccccCCHHHHH----HHHHcC---CEEEEECCHHHHhCCCC
Confidence            4789999999995   9999999986 68999999998754311122211    112212   12223579999999999


Q ss_pred             EEEEcCCC-----Chhh------hccccHHHHhcCCCCcEEEEc-CCCcccCHH
Q 020301          239 VISLHPVL-----DKTT------YHLINKERLATMKKEAILVNC-SRGPVIDEV  280 (328)
Q Consensus       239 iV~l~~pl-----t~~t------~~li~~~~~~~mk~ga~lIN~-aRG~~vde~  280 (328)
                      +|...--.     ..+.      .--++++.++.+|+++++.-+ =||.=|+.+
T Consensus       219 vvyt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclPRg~Ev~~~  272 (301)
T TIGR00670       219 VLYVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLPRVDEIDPS  272 (301)
T ss_pred             EEEECCccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCCCCcccCHH
Confidence            99663210     0011      223578888889999888844 466544443

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=95.53  E-value=0.047  Score=50.42  Aligned_cols=108  Identities=21%  Similarity=0.185  Sum_probs=67.3

Q ss_pred             cccccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301          159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (328)
Q Consensus       159 ~~~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (328)
                      .|.+|...|++|+|+ |.||..+||.| .+-+++....-|.......+... |   +    ..+.+.....+++..+.+.
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~l-a~~~~~~~ll~r~aea~~rq~l~-~---l----~e~~~~~~i~s~d~~~~~e  231 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWL-APKVGVKELLLRDAEARNRQRLT-L---L----QEELGRGKIMSLDYALPQE  231 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHh-ccccCEEEEecccHHhhhhhhhh-h---c----ccccCCCeeeecccccccc
Confidence            478999999999997 99999999997 46666655554433221111000 0   0    0112222345677666666


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHH
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV  280 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~  280 (328)
                      |+++-...  ..+-..|+...   +|||+.+|+-++..=||+.
T Consensus       232 ~i~v~vAs--~~~g~~I~pq~---lkpg~~ivD~g~P~dvd~~  269 (351)
T COG5322         232 DILVWVAS--MPKGVEIFPQH---LKPGCLIVDGGYPKDVDTS  269 (351)
T ss_pred             ceEEEEee--cCCCceechhh---ccCCeEEEcCCcCcccccc
Confidence            66643322  23345566654   6899999999998777664

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.51  E-value=0.14  Score=48.17  Aligned_cols=120  Identities=17%  Similarity=0.242  Sum_probs=67.1

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch--hHHHHHHhhhhhhhhcCCCCCcccccc---CCHHHHhh
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLR  235 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~  235 (328)
                      ++.|+++.|+|.|-.+++++-.|+ ..|+ +|.+++|+..  .+.+...+.+..    ...........   ..+.+.+.
T Consensus       121 ~~~~k~vlvlGaGGaarAi~~~l~-~~g~~~i~i~nRt~~~~~ka~~la~~~~~----~~~~~~~~~~~~~~~~l~~~~~  195 (288)
T PRK12749        121 DIKGKTMVLLGAGGASTAIGAQGA-IEGLKEIKLFNRRDEFFDKALAFAQRVNE----NTDCVVTVTDLADQQAFAEALA  195 (288)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHH-HCCCCEEEEEeCCccHHHHHHHHHHHhhh----ccCceEEEechhhhhhhhhhcc
Confidence            468899999999999999998764 5676 8999999853  223333222210    00000011111   11334567


Q ss_pred             cCCEEEEcCCCChh--hhc-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          236 EADVISLHPVLDKT--TYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       236 ~aDiV~l~~plt~~--t~~-li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      ++|+|+.+.|..-.  +.. ++..  .+.++++.++.++-=.+ ..+.-|.+|-+.|
T Consensus       196 ~aDivINaTp~Gm~~~~~~~~~~~--~~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G  249 (288)
T PRK12749        196 SADILTNGTKVGMKPLENESLVND--ISLLHPGLLVTECVYNP-HMTKLLQQAQQAG  249 (288)
T ss_pred             cCCEEEECCCCCCCCCCCCCCCCc--HHHCCCCCEEEEecCCC-ccCHHHHHHHHCC
Confidence            89999999986322  111 1111  23356777787775333 3444444444434

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.47  E-value=0.23  Score=48.43  Aligned_cols=119  Identities=16%  Similarity=0.199  Sum_probs=78.5

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHH----------HHHHhhhhhhhhcCCCCCccccccCCHHHHhh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL----------EKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (328)
                      .++.|+|.|-+|...+-.| ..+|-+|+.+|..+.+-.          |.-.++   .+++ ....-.....++.++.++
T Consensus         1 MkI~viGtGYVGLv~g~~l-A~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~---ll~~-~~~~gRl~fTtd~~~a~~   75 (414)
T COG1004           1 MKITVIGTGYVGLVTGACL-AELGHEVVCVDIDESKVELLNKGISPIYEPGLEE---LLKE-NLASGRLRFTTDYEEAVK   75 (414)
T ss_pred             CceEEECCchHHHHHHHHH-HHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHH---HHHh-ccccCcEEEEcCHHHHHh
Confidence            3689999999999999998 589999999998765311          000111   1111 111111223468889999


Q ss_pred             cCCEEEEcCCCChhhhcccc--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          236 EADVISLHPVLDKTTYHLIN--------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~--------~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      .||++++++|..+.-.+-+|        ++..+.++..+++|+=|.-.+=-.+.+.+-+.+.
T Consensus        76 ~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~  137 (414)
T COG1004          76 DADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREE  137 (414)
T ss_pred             cCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhh
Confidence            99999999995544344343        4556667776999999887665555555555443

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.38  E-value=0.064  Score=50.81  Aligned_cols=73  Identities=21%  Similarity=0.252  Sum_probs=46.1

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCC-C-CCccccccCCHHHHhhcCCEEEE
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANG-E-QPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      +|+|||.|.+|..+|..++ ..|  -+|..+|++......+..+.     .+.. . .+.. ....+. +.++.||+|++
T Consensus         2 kI~IIGaG~VG~~~a~~l~-~~g~~~ev~l~D~~~~~~~g~a~dl-----~~~~~~~~~~~-i~~~d~-~~l~~aDiVii   73 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALL-LRGLASEIVLVDINKAKAEGEAMDL-----AHGTPFVKPVR-IYAGDY-ADCKGADVVVI   73 (308)
T ss_pred             EEEEECCCHHHHHHHHHHH-HcCCCCEEEEEECCchhhhhHHHHH-----HccccccCCeE-EeeCCH-HHhCCCCEEEE
Confidence            6999999999999999874 556  58999999764321111111     0000 0 0011 112344 45899999999


Q ss_pred             cCCCC
Q 020301          243 HPVLD  247 (328)
Q Consensus       243 ~~plt  247 (328)
                      +.+..
T Consensus        74 ta~~~   78 (308)
T cd05292          74 TAGAN   78 (308)
T ss_pred             ccCCC
Confidence            99853

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.33  E-value=0.051  Score=54.83  Aligned_cols=113  Identities=19%  Similarity=0.187  Sum_probs=68.6

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      +.|+++.|+|+|.+|.+.++.| +..|++|+++|..... .+.        ++..|..   ........+.++.+|+|+.
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L-~~~G~~v~~~D~~~~~-~~~--------l~~~g~~---~~~~~~~~~~l~~~D~VV~   76 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAAL-TRFGARPTVCDDDPDA-LRP--------HAERGVA---TVSTSDAVQQIADYALVVT   76 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHH--------HHhCCCE---EEcCcchHhHhhcCCEEEE
Confidence            5789999999999999999986 7999999999965432 211        1122221   1111123455788998877


Q ss_pred             cCCCChhhh----------ccccHHHHh-cC--------CCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          243 HPVLDKTTY----------HLINKERLA-TM--------KKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       243 ~~plt~~t~----------~li~~~~~~-~m--------k~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      .-.-.+...          .++++-.|. ..        +...+-|--+-|..--..-+...|+.
T Consensus        77 SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~  141 (488)
T PRK03369         77 SPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA  141 (488)
T ss_pred             CCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence            643222211          133333332 11        11244555567888777778888875

>PRK12861 malic enzyme; Reviewed

Probab=95.32  E-value=0.45  Score=50.40  Aligned_cols=162  Identities=19%  Similarity=0.223  Sum_probs=105.7

Q ss_pred             CceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcC
Q 020301          109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (328)
Q Consensus       109 gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~f  188 (328)
                      .|++.|+--   +.+|=-+++-+++.+|-                     .|..+...++.|.|.|.-|-.+|+.| ...
T Consensus       157 ~ipvf~DD~---qGTa~v~lA~llnal~~---------------------~gk~l~d~~iv~~GAGaAg~~ia~~l-~~~  211 (764)
T PRK12861        157 KIPVFHDDQ---HGTAITVSAAFINGLKV---------------------VGKSIKEVKVVTSGAGAAALACLDLL-VDL  211 (764)
T ss_pred             CCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhHcEEEEECHhHHHHHHHHHH-HHc
Confidence            688888733   34566777777777662                     24578889999999999999999997 577


Q ss_pred             Cc---EEEEEcCCc-----hhH-HHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHH
Q 020301          189 KM---NLIYYDLYQ-----ATR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL  259 (328)
Q Consensus       189 g~---~V~~~d~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~  259 (328)
                      |.   +++.+|+.-     .+. ...+...|.   +..        ...+|.|+++.+|+++=. .    +.++|+++.+
T Consensus       212 G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a---~~~--------~~~~L~eai~~advliG~-S----~~g~ft~e~v  275 (764)
T PRK12861        212 GLPVENIWVTDIEGVVYRGRTTLMDPDKERFA---QET--------DARTLAEVIGGADVFLGL-S----AGGVLKAEML  275 (764)
T ss_pred             CCChhhEEEEcCCCeeeCCCcccCCHHHHHHH---hhc--------CCCCHHHHHhcCCEEEEc-C----CCCCCCHHHH
Confidence            88   799999542     000 111111221   110        125899999999988533 2    2589999999


Q ss_pred             hcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCC-ccEEEEeCCCCCCCCCCCcccCCCeEEcCCCC
Q 020301          260 ATMKKEAILVNCSRGPV-IDEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  322 (328)
Q Consensus       260 ~~mk~ga~lIN~aRG~~-vde~aL~~aL~~g~-i~gaalDV~~~EP~~~~~L~~~~nvilTPHia  322 (328)
                      +.|.+..++.=.|.... +..+..++  ..|+ |.+-|--   ..|      -+..|+++-|-|+
T Consensus       276 ~~Ma~~PIIFaLsNPtpE~~pe~a~~--~~g~aivaTGrs---~~p------nQ~NN~l~FPgi~  329 (764)
T PRK12861        276 KAMAARPLILALANPTPEIFPELAHA--TRDDVVIATGRS---DYP------NQVNNVLCFPYIF  329 (764)
T ss_pred             HHhccCCEEEECCCCCccCCHHHHHh--cCCCEEEEeCCc---CCC------Cccceeeecchhh
Confidence            99999999999888664 12232232  3344 3333111   112      3457888888664

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.28  E-value=0.057  Score=46.83  Aligned_cols=93  Identities=19%  Similarity=0.245  Sum_probs=54.2

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HH-H----------HHhhhhhhhhcC-CCCCccc----ccc
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-K----------FVTAYGQFLKAN-GEQPVTW----KRA  227 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~~-~----------~~~~~~~~~~~~-~~~~~~~----~~~  227 (328)
                      +|+|+|.|.+|..+|+.|+ ..|. ++..+|...-..  +. .          ..+.....+++- .......    ...
T Consensus         1 ~VlViG~GglGs~ia~~La-~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~   79 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLA-RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE   79 (174)
T ss_pred             CEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence            4899999999999999985 6677 588888765100  00 0          000000001100 0000000    011


Q ss_pred             CCHHHHhhcCCEEEEcCCCChhhhccccHHHHhc
Q 020301          228 SSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (328)
Q Consensus       228 ~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~  261 (328)
                      .+++++++++|+|+.|. .+.+++..++....++
T Consensus        80 ~~~~~~l~~~DlVi~~~-d~~~~r~~i~~~~~~~  112 (174)
T cd01487          80 NNLEGLFGDCDIVVEAF-DNAETKAMLAESLLGN  112 (174)
T ss_pred             hhHHHHhcCCCEEEECC-CCHHHHHHHHHHHHHH
Confidence            24567899999999884 4788888777766655

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.27  E-value=0.076  Score=47.04  Aligned_cols=98  Identities=19%  Similarity=0.169  Sum_probs=57.5

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HH-------HH-----HhhhhhhhhcCC-CCCccc
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-------KF-----VTAYGQFLKANG-EQPVTW  224 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~~-------~~-----~~~~~~~~~~~~-~~~~~~  224 (328)
                      ..|..++|.|+|+|.+|.++|+.|+ ..|. ++..+|...-..  +.       +.     .+.-.+.+++-. ......
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La-~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~   95 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLV-LSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSV   95 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHH-HcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEE
Confidence            5699999999999999999999985 6787 588888763211  00       00     000000000000 000000


Q ss_pred             --ccc-CCHHHHhhcCCEEEEcCCCChhhhccccHHHHh
Q 020301          225 --KRA-SSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (328)
Q Consensus       225 --~~~-~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~  260 (328)
                        ... ...++.++++|+|+.+++ +.+++..+|+...+
T Consensus        96 ~~~~~~~~~~~~~~~~dvVi~~~~-~~~~~~~ln~~c~~  133 (197)
T cd01492          96 DTDDISEKPEEFFSQFDVVVATEL-SRAELVKINELCRK  133 (197)
T ss_pred             EecCccccHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence              001 234577899999998876 46677777765544

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.25  E-value=0.2  Score=44.89  Aligned_cols=100  Identities=19%  Similarity=0.140  Sum_probs=63.0

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH-----hhcC
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-----LREA  237 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-----l~~a  237 (328)
                      ..|+++.|.|.|.+|+.+++.+ +..|.+|++.+++....  ++...+       +....-.....+..+.     -...
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a-~~~g~~v~~~~~~~~~~--~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~  202 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLA-KAAGARVIVTDRSDEKL--ELAKEL-------GADHVIDYKEEDLEEELRLTGGGGA  202 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHHH--HHHHHh-------CCceeccCCcCCHHHHHHHhcCCCC
Confidence            3578999999999999999985 78999999998875431  111111       1111000011122221     2458


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCccc
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~v  277 (328)
                      |+++.+++...     .-...++.|+++..+++.+.....
T Consensus       203 d~vi~~~~~~~-----~~~~~~~~l~~~G~~v~~~~~~~~  237 (271)
T cd05188         203 DVVIDAVGGPE-----TLAQALRLLRPGGRIVVVGGTSGG  237 (271)
T ss_pred             CEEEECCCCHH-----HHHHHHHhcccCCEEEEEccCCCC
Confidence            99998876321     235567888999999998765543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.22  E-value=0.11  Score=49.04  Aligned_cols=125  Identities=14%  Similarity=0.117  Sum_probs=71.9

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      .+++|+|.|.||.-+|-.|+ ..|.+|..++|... ..+.....-+-.....+.. ..+.....-.+.....|+|++++=
T Consensus         3 m~I~IiGaGaiG~~~a~~L~-~~G~~V~lv~r~~~-~~~~i~~~~Gl~i~~~g~~-~~~~~~~~~~~~~~~~D~viv~vK   79 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLA-RAGLPVRLILRDRQ-RLAAYQQAGGLTLVEQGQA-SLYAIPAETADAAEPIHRLLLACK   79 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHH-hCCCCeEEEEechH-HHHHHhhcCCeEEeeCCcc-eeeccCCCCcccccccCEEEEECC
Confidence            46999999999999999984 67999999998642 2221111000001111110 000000111123468899999975


Q ss_pred             CChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEE
Q 020301          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (328)
Q Consensus       246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaal  296 (328)
                      . .++...+ +.....+.+++.+|-.--| +-.++.+.+.+.+.++.++..
T Consensus        80 ~-~~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~  127 (305)
T PRK05708         80 A-YDAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASS  127 (305)
T ss_pred             H-HhHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEe
Confidence            3 3344433 3445556788877766544 345667777776666665543

>PRK06270 homoserine dehydrogenase; Provisional

Probab=95.20  E-value=0.13  Score=49.42  Aligned_cols=121  Identities=21%  Similarity=0.264  Sum_probs=65.4

Q ss_pred             EEEEEecCHHHHHHHHHHHh---------cCCcEEEE-EcCCch-----h-HHHHHHhhhhhhhhcCCCCCc--cccccC
Q 020301          167 TVGVIGAGRIGSAYARMMVE---------GFKMNLIY-YDLYQA-----T-RLEKFVTAYGQFLKANGEQPV--TWKRAS  228 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~---------~fg~~V~~-~d~~~~-----~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~  228 (328)
                      +|||+|+|.||+.+++.+.+         +++++|.+ +|+...     . ..++. ..   +....+....  ......
T Consensus         4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~-~~---~~~~~~~~~~~~~~~~~~   79 (341)
T PRK06270          4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELA-LK---VKEETGKLADYPEGGGEI   79 (341)
T ss_pred             EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHH-HH---HHhccCCcccCccccccC
Confidence            69999999999999998642         23677664 454210     0 00110 00   1111111000  001124


Q ss_pred             CHHHHhh--cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCc
Q 020301          229 SMDEVLR--EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM  291 (328)
Q Consensus       229 ~l~ell~--~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~aL~~g~i  291 (328)
                      ++++++.  ..|+|+.+.|....+...--+-....++.|.-+|-..-+.+ ..-+.|.++.++...
T Consensus        80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~  145 (341)
T PRK06270         80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV  145 (341)
T ss_pred             CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence            8888884  67999999996554332222223455666766666544443 245677777766543

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.19  E-value=0.043  Score=54.33  Aligned_cols=73  Identities=16%  Similarity=0.222  Sum_probs=47.9

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCc-c-ccccCCHHHH-hhcCCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-T-WKRASSMDEV-LREADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~el-l~~aDiV~l  242 (328)
                      +++.|+|+|.+|+.+|+.| ...|.+|+++|+++... +....       ..+.... + ......++++ +..+|.|++
T Consensus         1 m~viIiG~G~ig~~~a~~L-~~~g~~v~vid~~~~~~-~~~~~-------~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~   71 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENL-SGENNDVTVIDTDEERL-RRLQD-------RLDVRTVVGNGSSPDVLREAGAEDADLLIA   71 (453)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCcEEEEECCHHHH-HHHHh-------hcCEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence            3689999999999999997 67899999999876532 11100       0111000 0 0112345566 789999999


Q ss_pred             cCCCC
Q 020301          243 HPVLD  247 (328)
Q Consensus       243 ~~plt  247 (328)
                      +++..
T Consensus        72 ~~~~~   76 (453)
T PRK09496         72 VTDSD   76 (453)
T ss_pred             ecCCh
Confidence            98843

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=95.17  E-value=0.4  Score=46.98  Aligned_cols=167  Identities=21%  Similarity=0.192  Sum_probs=103.2

Q ss_pred             hCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHh
Q 020301          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (328)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~  186 (328)
                      +..|+|.|+--   ..+|=.+++-+++.+|-                     .|..|...++.+.|.|.-|-.+++.+ .
T Consensus       165 ~~~IPvFhDDq---qGTaiv~lA~llnalk~---------------------~gk~l~d~kiv~~GAGAAgiaia~~l-~  219 (432)
T COG0281         165 RMNIPVFHDDQ---QGTAIVTLAALLNALKL---------------------TGKKLKDQKIVINGAGAAGIAIADLL-V  219 (432)
T ss_pred             cCCCCcccccc---cHHHHHHHHHHHHHHHH---------------------hCCCccceEEEEeCCcHHHHHHHHHH-H
Confidence            34577777543   34566777777766652                     35689999999999999999999997 6


Q ss_pred             cCCc---EEEEEcCCch---hH----HHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccH
Q 020301          187 GFKM---NLIYYDLYQA---TR----LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (328)
Q Consensus       187 ~fg~---~V~~~d~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~  256 (328)
                      +.|+   +|+.+|+.--   .+    ..++..+|.   .+ .     ...... ++.+..+|+++=+     ++.+.|.+
T Consensus       220 ~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a---~~-~-----~~~~~~-~~~~~~adv~iG~-----S~~G~~t~  284 (432)
T COG0281         220 AAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKA---IE-D-----TGERTL-DLALAGADVLIGV-----SGVGAFTE  284 (432)
T ss_pred             HhCCCcccEEEEecCCcccCCCcccccchHHHHHH---Hh-h-----hccccc-cccccCCCEEEEc-----CCCCCcCH
Confidence            8888   6999987621   00    011111110   00 0     000111 4588999998655     22399999


Q ss_pred             HHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCC
Q 020301          257 ERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  322 (328)
Q Consensus       257 ~~~~~mk~ga~lIN~aRG~~-vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia  322 (328)
                      +.++.|.+..++.=.|--.. +..++..++=+...|.+-|      -|  +.|- +..|+++-|.|+
T Consensus       285 e~V~~Ma~~PiIfalaNP~pEi~Pe~a~~~~~~aaivaTG------rs--d~Pn-QvNNvL~FPgIf  342 (432)
T COG0281         285 EMVKEMAKHPIIFALANPTPEITPEDAKEWGDGAAIVATG------RS--DYPN-QVNNVLIFPGIF  342 (432)
T ss_pred             HHHHHhccCCEEeecCCCCccCCHHHHhhcCCCCEEEEeC------CC--CCcc-cccceeEcchhh
Confidence            99999999999988876552 2333333221111333332      12  1111 678999999875

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=95.10  E-value=0.091  Score=50.67  Aligned_cols=101  Identities=16%  Similarity=0.263  Sum_probs=56.9

Q ss_pred             CEEEEEec-CHHHHHHHHHHHhcC-CcEEEE-EcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~~f-g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      .+|+|+|. |.+|+++++.|. .. +.++.+ +++..... +...+.|. +..  +.....+ ...+.++++.++|+|++
T Consensus         1 ~kVaIiGATG~vG~ellr~L~-~hP~~el~~l~~s~~sag-k~~~~~~~-~l~--~~~~~~~-~~~~~~~~~~~~DvVf~   74 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLL-NHPEVEITYLVSSRESAG-KPVSEVHP-HLR--GLVDLNL-EPIDEEEIAEDADVVFL   74 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHH-cCCCceEEEEeccchhcC-CChHHhCc-ccc--ccCCcee-ecCCHHHhhcCCCEEEE
Confidence            37999998 999999999974 55 678774 45443210 00101110 000  1001111 11255677678999999


Q ss_pred             cCCCChhhhccccHHHHhcC-CCCcEEEEcCCCcccC
Q 020301          243 HPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVID  278 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~m-k~ga~lIN~aRG~~vd  278 (328)
                      |+|.. ..     ++....+ +.|..+|+.|-.-=.+
T Consensus        75 alP~~-~s-----~~~~~~~~~~G~~VIDlS~~fR~~  105 (346)
T TIGR01850        75 ALPHG-VS-----AELAPELLAAGVKVIDLSADFRLK  105 (346)
T ss_pred             CCCch-HH-----HHHHHHHHhCCCEEEeCChhhhcC
Confidence            99932 22     3333332 5688999987443344

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.09  E-value=0.12  Score=42.94  Aligned_cols=31  Identities=23%  Similarity=0.318  Sum_probs=26.9

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~  198 (328)
                      ++.|+|+|.+|.++|+.|+ ..|. ++..+|..
T Consensus         1 ~VliiG~GglGs~ia~~L~-~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLA-RSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHH-HCCCCEEEEEcCC
Confidence            4899999999999999984 6787 78899876

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=95.08  E-value=1.6  Score=41.53  Aligned_cols=72  Identities=15%  Similarity=0.194  Sum_probs=49.0

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh-H-HHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT-R-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      .+.|+||++||- +++.++++..+ ..||++|.+..|..-. . .++..+    .++..+    ......++++.+++||
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~----~~~~~g----~i~~~~d~~~av~~aD  220 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGIT-AALGIHLTLVTPIAAKENIHAQTVE----RAKKKG----TLSWEMNLHKAVSHAD  220 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCCccHHHHHHHHH----HHHhcC----CeEEEeCHHHHhCCCC
Confidence            478999999997 68999999986 5899999999885421 1 111000    011112    1122468999999999


Q ss_pred             EEEE
Q 020301          239 VISL  242 (328)
Q Consensus       239 iV~l  242 (328)
                      +|..
T Consensus       221 vvy~  224 (311)
T PRK14804        221 YVYT  224 (311)
T ss_pred             EEEe
Confidence            9976

>PLN02527 aspartate carbamoyltransferase

Probab=95.03  E-value=0.21  Score=47.34  Aligned_cols=110  Identities=19%  Similarity=0.349  Sum_probs=70.0

Q ss_pred             ccCCCEEEEEecC---HHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301          162 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (328)
Q Consensus       162 ~l~g~tvgIiG~G---~IG~~vA~~l~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (328)
                      .+.|.+|+++|-+   ++.++++..+ ..| |++|.+..|..-...+++.+    .++..|   ..+....++++.++.|
T Consensus       148 ~l~g~kva~vGD~~~~rv~~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~----~~~~~g---~~~~~~~d~~~a~~~a  219 (306)
T PLN02527        148 RLDGIKVGLVGDLANGRTVRSLAYLL-AKYEDVKIYFVAPDVVKMKDDIKD----YLTSKG---VEWEESSDLMEVASKC  219 (306)
T ss_pred             CcCCCEEEEECCCCCChhHHHHHHHH-HhcCCCEEEEECCCccCCCHHHHH----HHHHcC---CEEEEEcCHHHHhCCC
Confidence            3789999999965   6889999886 466 99999888743211111111    112212   1223347899999999


Q ss_pred             CEEEEcCCCCh------h-h-----hccccHHHHhcCCCCcEEEEc-CCCcccCH
Q 020301          238 DVISLHPVLDK------T-T-----YHLINKERLATMKKEAILVNC-SRGPVIDE  279 (328)
Q Consensus       238 DiV~l~~plt~------~-t-----~~li~~~~~~~mk~ga~lIN~-aRG~~vde  279 (328)
                      |+|....-..+      + -     .-.++++.++..|+++++.-+ -||.=|+.
T Consensus       220 Dvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclPRg~Ei~~  274 (306)
T PLN02527        220 DVLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLPRLDEITT  274 (306)
T ss_pred             CEEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCCCcccccH
Confidence            99977442111      0 1     244678888889999888855 46644433

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.02  E-value=0.07  Score=52.75  Aligned_cols=70  Identities=14%  Similarity=0.101  Sum_probs=51.3

Q ss_pred             ccccCCCEEEEEec----------CHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccC
Q 020301          160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS  228 (328)
Q Consensus       160 ~~~l~g~tvgIiG~----------G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (328)
                      +.++.|++|+|+|+          .+-...+++.| ...| ++|.+|||........    +          .. .....
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L-~~~gg~~v~~~DP~~~~~~~~----~----------~~-~~~~~  378 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELI-AQWHSGETLVVEPNIHQLPKK----L----------DG-LVTLV  378 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHH-HhcCCcEEEEECCCCCchhhh----c----------cC-ceeeC
Confidence            45689999999998          55777899997 5775 9999999985321000    0          00 11236


Q ss_pred             CHHHHhhcCCEEEEcCC
Q 020301          229 SMDEVLREADVISLHPV  245 (328)
Q Consensus       229 ~l~ell~~aDiV~l~~p  245 (328)
                      ++++.++.||.|+++.+
T Consensus       379 ~~~~~~~~ad~vvi~t~  395 (415)
T PRK11064        379 SLDEALATADVLVMLVD  395 (415)
T ss_pred             CHHHHHhCCCEEEECCC
Confidence            88999999999999987

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=94.96  E-value=2.2  Score=41.08  Aligned_cols=77  Identities=12%  Similarity=0.076  Sum_probs=46.9

Q ss_pred             c-CCCEEEEEecC-------HHHHHHHHHHHhcCCcEEEEEcC-CchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH
Q 020301          163 L-KGQTVGVIGAG-------RIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (328)
Q Consensus       163 l-~g~tvgIiG~G-------~IG~~vA~~l~~~fg~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (328)
                      + .|++++|+|.|       ++.++++..+ ..||++|.+..| ..-...++..+.--+.+...|   .......++++.
T Consensus       166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea  241 (335)
T PRK04523        166 TLRGKKYVLTWTYHPKPLNTAVANSALLIA-TRLGMDVTLLCPTPDYILDERYMDWAEQNAAESG---GSLTVSHDIDSA  241 (335)
T ss_pred             ccCCCEEEEEEeccCcccccHHHHHHHHHH-HHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence            5 68999887654       7888888876 589999999998 321111111110000011112   122335799999


Q ss_pred             hhcCCEEEEc
Q 020301          234 LREADVISLH  243 (328)
Q Consensus       234 l~~aDiV~l~  243 (328)
                      +++||+|..-
T Consensus       242 ~~~aDvvy~~  251 (335)
T PRK04523        242 YAGADVVYAK  251 (335)
T ss_pred             hCCCCEEEec
Confidence            9999999653

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=94.95  E-value=0.048  Score=56.19  Aligned_cols=73  Identities=14%  Similarity=0.230  Sum_probs=49.5

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC---HHHHhhcC
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREA  237 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~a  237 (328)
                      ..+..|+|||||-|..|+.+++.+ +.+|.+|+++|+.+......+.+.+            ....+.+   +.++.+++
T Consensus        18 ~~~~~k~IgIIGgGqlg~mla~aA-~~lG~~Vi~ld~~~~apa~~~AD~~------------~v~~~~D~~~l~~~a~~~   84 (577)
T PLN02948         18 HGVSETVVGVLGGGQLGRMLCQAA-SQMGIKVKVLDPLEDCPASSVAARH------------VVGSFDDRAAVREFAKRC   84 (577)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCchhhhCcee------------eeCCCCCHHHHHHHHHHC
Confidence            348899999999999999999985 7899999999987643211111000            0011233   55667889


Q ss_pred             CEEEEcCCC
Q 020301          238 DVISLHPVL  246 (328)
Q Consensus       238 DiV~l~~pl  246 (328)
                      |+|+.+...
T Consensus        85 dvIt~e~e~   93 (577)
T PLN02948         85 DVLTVEIEH   93 (577)
T ss_pred             CEEEEecCC
Confidence            998765443

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=94.90  E-value=0.061  Score=52.56  Aligned_cols=109  Identities=14%  Similarity=0.199  Sum_probs=64.2

Q ss_pred             cCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHH-HhhcCCEE
Q 020301          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVI  240 (328)
Q Consensus       163 l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDiV  240 (328)
                      -..++|+|+|. |.+|+++.+.|...=+++|..+.+..... +.+.+.+ .+... +  .  .....++++ .++++|+|
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG-~~i~~~~-~~l~~-~--~--~~~~~~~~~~~~~~~DvV  108 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAG-QSFGSVF-PHLIT-Q--D--LPNLVAVKDADFSDVDAV  108 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcC-CCchhhC-ccccC-c--c--ccceecCCHHHhcCCCEE
Confidence            35568999998 99999999997533377888776543211 0000001 00000 0  0  011122222 25889999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE  284 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~  284 (328)
                      ++++|. .     ...+....|+.|..+|+.|-.-..+.++.++
T Consensus       109 f~Alp~-~-----~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y~  146 (381)
T PLN02968        109 FCCLPH-G-----TTQEIIKALPKDLKIVDLSADFRLRDIAEYE  146 (381)
T ss_pred             EEcCCH-H-----HHHHHHHHHhCCCEEEEcCchhccCCcccch
Confidence            999994 2     3344445566789999998766666655544

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=94.90  E-value=0.068  Score=51.46  Aligned_cols=100  Identities=18%  Similarity=0.287  Sum_probs=54.8

Q ss_pred             CEEEEEec-CHHHHHHHHHHHhcC-CcEEEE-EcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHH-HhhcCCEEE
Q 020301          166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVIS  241 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~~f-g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDiV~  241 (328)
                      .+++|+|. |.+|+.+++.+. .. ++++.+ +++.....  ...+.|. +.  .+....   .+.++++ ...++|+|+
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~-~~p~~elv~v~~~~~~g~--~l~~~~~-~~--~~~~~~---~~~~~~~~~~~~vD~Vf   73 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLL-NHPEVEIVAVTSRSSAGK--PLSDVHP-HL--RGLVDL---VLEPLDPEILAGADVVF   73 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHH-cCCCceEEEEECccccCc--chHHhCc-cc--ccccCc---eeecCCHHHhcCCCEEE
Confidence            58999997 999999999974 44 677655 55322110  0101110 00  000010   1223332 457899999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCH
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde  279 (328)
                      +|+|.. ....+. .   ...+.|..+|+.|-.--.+.
T Consensus        74 ~alP~~-~~~~~v-~---~a~~aG~~VID~S~~fR~~~  106 (343)
T PRK00436         74 LALPHG-VSMDLA-P---QLLEAGVKVIDLSADFRLKD  106 (343)
T ss_pred             ECCCcH-HHHHHH-H---HHHhCCCEEEECCcccCCCC
Confidence            999942 212211 1   22357899999985444444

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=94.90  E-value=0.35  Score=45.33  Aligned_cols=119  Identities=18%  Similarity=0.212  Sum_probs=75.3

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      ....|+++.|+|.|-.+++++..| +..|+ +|.+++|+.+. .++..+.|..    .+. ........+++.+ .++|+
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL-~~~g~~~i~V~NRt~~r-a~~La~~~~~----~~~-~~~~~~~~~~~~~-~~~dl  193 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFAL-AEAGAKRITVVNRTRER-AEELADLFGE----LGA-AVEAAALADLEGL-EEADL  193 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHH-HHHHHHHhhh----ccc-ccccccccccccc-cccCE
Confidence            356899999999999999999997 57885 79999998754 2333332211    110 0001111222222 27999


Q ss_pred             EEEcCCCChhhhc---cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020301          240 ISLHPVLDKTTYH---LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (328)
Q Consensus       240 V~l~~plt~~t~~---li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i  291 (328)
                      |+.+.|..-.-..   +++   ...++++.++.++-=.+. ++.-|..|=+.|..
T Consensus       194 iINaTp~Gm~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G~~  244 (283)
T COG0169         194 LINATPVGMAGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQGAK  244 (283)
T ss_pred             EEECCCCCCCCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcCCe
Confidence            9999997654431   333   566788999999865543 55556666555643

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=94.87  E-value=0.15  Score=47.85  Aligned_cols=89  Identities=13%  Similarity=0.225  Sum_probs=51.9

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEEEc
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH  243 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~  243 (328)
                      ++||||.|.||+..+..+.+.-++++. ++|++++....+..       ++.|..    ..+.+.+++++  +-|+|+++
T Consensus         3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A-------~~~Gi~----~~~~~~e~ll~~~dIDaV~ia   71 (285)
T TIGR03215         3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA-------RELGVK----TSAEGVDGLLANPDIDIVFDA   71 (285)
T ss_pred             EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH-------HHCCCC----EEECCHHHHhcCCCCCEEEEC
Confidence            699999999999887665433356765 46766543211111       111211    12357888886  57889999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~  271 (328)
                      .|..  ++.   +-....++.|..+|+-
T Consensus        72 Tp~~--~H~---e~a~~al~aGk~VIde   94 (285)
T TIGR03215        72 TSAK--AHA---RHARLLAELGKIVIDL   94 (285)
T ss_pred             CCcH--HHH---HHHHHHHHcCCEEEEC
Confidence            9832  222   2223334556666554

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=94.82  E-value=0.11  Score=48.94  Aligned_cols=102  Identities=22%  Similarity=0.338  Sum_probs=59.7

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH-----------------------HHHHHhhhhhhhhcCCCC--
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR-----------------------LEKFVTAYGQFLKANGEQ--  220 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~-----------------------~~~~~~~~~~~~~~~~~~--  220 (328)
                      +|.|+|.|.+|..+|+.|+ ..|. ++..+|...-..                       ..+...+.....+-.+..  
T Consensus         1 kVLIvGaGGLGs~vA~~La-~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~   79 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLL-GWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLS   79 (307)
T ss_pred             CEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeee
Confidence            5899999999999999984 7776 677777542110                       000000000000000000  


Q ss_pred             ------Cc-------cccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          221 ------PV-------TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       221 ------~~-------~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                            +.       .......++++++++|+|+.++ .+-++|.+++......-|   .+||.+.
T Consensus        80 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~~k---~~I~aal  141 (307)
T cd01486          80 IPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAKNK---LVINAAL  141 (307)
T ss_pred             ccccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHhCC---cEEEEEe
Confidence                  00       0001123679999999999999 488899888877665444   6666543

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.79  E-value=0.1  Score=52.23  Aligned_cols=119  Identities=17%  Similarity=0.127  Sum_probs=71.1

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ..+.++++.|||.|.+|.++|+.| ...|.+|.++|...........    ..++..|..-..   -...+ ....+|+|
T Consensus        12 ~~~~~~~v~viG~G~~G~~~A~~L-~~~G~~V~~~d~~~~~~~~~~~----~~l~~~gv~~~~---~~~~~-~~~~~D~V   82 (480)
T PRK01438         12 SDWQGLRVVVAGLGVSGFAAADAL-LELGARVTVVDDGDDERHRALA----AILEALGATVRL---GPGPT-LPEDTDLV   82 (480)
T ss_pred             cCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhhHHHH----HHHHHcCCEEEE---CCCcc-ccCCCCEE
Confidence            457899999999999999999987 5899999999976532211111    112223321110   01111 44579999


Q ss_pred             EEcC---CCChhh-------hccccHHHH--hcCCC----CcEEEEcCCCcccCHHHHHHHHHc
Q 020301          241 SLHP---VLDKTT-------YHLINKERL--ATMKK----EAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       241 ~l~~---plt~~t-------~~li~~~~~--~~mk~----ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      ++..   |.++.-       ..++++-.|  ..+.+    ..+-|--+.|..--..-|...|+.
T Consensus        83 v~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~  146 (480)
T PRK01438         83 VTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA  146 (480)
T ss_pred             EECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence            8876   333321       113343332  33422    245566677888777778888865

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.78  E-value=0.26  Score=46.16  Aligned_cols=120  Identities=19%  Similarity=0.194  Sum_probs=68.4

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ++.|+++.|+|.|-.|++++-.|+ ..|+ +|.++||+..+. ++..+.+..   ..+..........++++.+..+|+|
T Consensus       124 ~~~~k~vlilGaGGaarAi~~aL~-~~g~~~i~i~nR~~~ka-~~La~~~~~---~~~~~~~~~~~~~~~~~~~~~~div  198 (283)
T PRK14027        124 NAKLDSVVQVGAGGVGNAVAYALV-THGVQKLQVADLDTSRA-QALADVINN---AVGREAVVGVDARGIEDVIAAADGV  198 (283)
T ss_pred             CcCCCeEEEECCcHHHHHHHHHHH-HCCCCEEEEEcCCHHHH-HHHHHHHhh---ccCcceEEecCHhHHHHHHhhcCEE
Confidence            356899999999999999999874 6787 799999986432 222222110   0010000000111234567789999


Q ss_pred             EEcCCCChhhh-c-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301          241 SLHPVLDKTTY-H-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (328)
Q Consensus       241 ~l~~plt~~t~-~-li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~  290 (328)
                      +.+.|..-... . .++.   ..++++.++.++-=.+ .++.-|.+|=+.|.
T Consensus       199 INaTp~Gm~~~~~~~~~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G~  246 (283)
T PRK14027        199 VNATPMGMPAHPGTAFDV---SCLTKDHWVGDVVYMP-IETELLKAARALGC  246 (283)
T ss_pred             EEcCCCCCCCCCCCCCCH---HHcCCCcEEEEcccCC-CCCHHHHHHHHCCC
Confidence            99999643211 1 1222   3355666777764433 44455555544443

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=94.78  E-value=0.071  Score=41.45  Aligned_cols=73  Identities=18%  Similarity=0.166  Sum_probs=44.2

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc--CCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l  242 (328)
                      .++.|+|.|+.|++++..+.+..|++ +.++|.++...               |..-.+..-+.+++++.+.  .|+-++
T Consensus         4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~---------------G~~i~gipV~~~~~~l~~~~~i~iaii   68 (96)
T PF02629_consen    4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKI---------------GKEIGGIPVYGSMDELEEFIEIDIAII   68 (96)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTT---------------TSEETTEEEESSHHHHHHHCTTSEEEE
T ss_pred             CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCcc---------------CcEECCEEeeccHHHhhhhhCCCEEEE
Confidence            47999999999999885443444554 34556655421               1111122233478887777  999999


Q ss_pred             cCCCChhhhccc
Q 020301          243 HPVLDKTTYHLI  254 (328)
Q Consensus       243 ~~plt~~t~~li  254 (328)
                      ++|. +.....+
T Consensus        69 ~VP~-~~a~~~~   79 (96)
T PF02629_consen   69 TVPA-EAAQEVA   79 (96)
T ss_dssp             ES-H-HHHHHHH
T ss_pred             EcCH-HHHHHHH
Confidence            9993 3444444

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.74  E-value=0.11  Score=52.50  Aligned_cols=118  Identities=17%  Similarity=0.152  Sum_probs=68.6

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh-HHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      +.++++.|+|+|..|.++|+.| +..|.+|.++|..... ...+        ++..+. ...........+.+..+|+|+
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~--------L~~~~~-~~~~~~g~~~~~~~~~~d~vv   74 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWC-ARHGARLRVADTREAPPNLAA--------LRAELP-DAEFVGGPFDPALLDGVDLVA   74 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEEcCCCCchhHHH--------HHhhcC-CcEEEeCCCchhHhcCCCEEE
Confidence            5688999999999999999997 6899999999975432 1111        111110 001111111245567899998


Q ss_pred             Ec--CCCC-----hh-------hhccccHHH-H-hcC--------CCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301          242 LH--PVLD-----KT-------TYHLINKER-L-ATM--------KKEAILVNCSRGPVIDEVALVEHLKQNP  290 (328)
Q Consensus       242 l~--~plt-----~~-------t~~li~~~~-~-~~m--------k~ga~lIN~aRG~~vde~aL~~aL~~g~  290 (328)
                      ..  +|.+     |+       ...++.+-. + ..+        ++..+-|--+-|..--..-|...|++..
T Consensus        75 ~sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g  147 (498)
T PRK02006         75 LSPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAG  147 (498)
T ss_pred             ECCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            86  4433     21       112232221 1 112        2234555556788877777888887533

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.72  E-value=0.17  Score=50.08  Aligned_cols=98  Identities=13%  Similarity=0.143  Sum_probs=58.3

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHH----HhhcCC
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLREAD  238 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~~aD  238 (328)
                      +..+++.|+|+|.+|+.+++.| ...|.+|+++|.+++.. +...+.+      .+. ........+.+.    -+.++|
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L-~~~~~~v~vid~~~~~~-~~~~~~~------~~~-~~i~gd~~~~~~L~~~~~~~a~  299 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLL-EKEGYSVKLIERDPERA-EELAEEL------PNT-LVLHGDGTDQELLEEEGIDEAD  299 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHC------CCC-eEEECCCCCHHHHHhcCCccCC
Confidence            4568899999999999999997 68899999999886532 2111110      011 010011122222    357899


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~  271 (328)
                      .|+++.+...  .+++-....+.+.+..+++-+
T Consensus       300 ~vi~~~~~~~--~n~~~~~~~~~~~~~~ii~~~  330 (453)
T PRK09496        300 AFIALTNDDE--ANILSSLLAKRLGAKKVIALV  330 (453)
T ss_pred             EEEECCCCcH--HHHHHHHHHHHhCCCeEEEEE
Confidence            9998888543  333333344555555555533

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=94.72  E-value=0.079  Score=49.80  Aligned_cols=111  Identities=20%  Similarity=0.194  Sum_probs=71.2

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHH--HHhhhhhhhhcCCCCCccccccCC---------
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQPVTWKRASS---------  229 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---------  229 (328)
                      -...+.++-++|+|.+|-..+-. +...|+-|..+|-.+....+.  ....|...-  +....-++.+..+         
T Consensus       160 gtv~pA~vlv~G~Gvagl~aiat-a~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~--~ee~~gGYAk~ms~~~~~~q~~  236 (356)
T COG3288         160 GTVSPAKVLVIGAGVAGLAAIAT-AVRLGAIVTARDLRMFKKEQVESLGAKFLAVE--DEESAGGYAKEMSEEFIAKQAE  236 (356)
T ss_pred             ccccchhhhhhhHHHHHHHHHHH-HhhcceEEehhhhhhHHhhhhhhccccccccc--ccccCCCccccCCHHHHHHHHH
Confidence            45777889999999999999887 477899999988765432111  111111100  0111111111112         


Q ss_pred             -HHHHhhcCCEEEEc--CCCChhhhccccHHHHhcCCCCcEEEEcC--CCc
Q 020301          230 -MDEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS--RGP  275 (328)
Q Consensus       230 -l~ell~~aDiV~l~--~plt~~t~~li~~~~~~~mk~ga~lIN~a--RG~  275 (328)
                       +.+.+++.|||+..  +|.-| .-.++.++..+.||||+++|+.+  +|+
T Consensus       237 ~~a~~~~~~DivITTAlIPGrp-AP~Lvt~~mv~sMkpGSViVDlAa~~GG  286 (356)
T COG3288         237 LVAEQAKEVDIVITTALIPGRP-APKLVTAEMVASMKPGSVIVDLAAETGG  286 (356)
T ss_pred             HHHHHhcCCCEEEEecccCCCC-CchhhHHHHHHhcCCCcEEEEehhhcCC
Confidence             45678899999543  55433 45679999999999999999985  554

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=94.71  E-value=0.16  Score=51.89  Aligned_cols=112  Identities=18%  Similarity=0.167  Sum_probs=64.6

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-hcCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV  240 (328)
                      ++.+|++.|+|.|-+|++++..| ...|++|++++|+.+. .+...+.+       +..   .....++.+.. ..+|+|
T Consensus       376 ~~~~k~vlIlGaGGagrAia~~L-~~~G~~V~i~nR~~e~-a~~la~~l-------~~~---~~~~~~~~~~~~~~~dii  443 (529)
T PLN02520        376 PLAGKLFVVIGAGGAGKALAYGA-KEKGARVVIANRTYER-AKELADAV-------GGQ---ALTLADLENFHPEEGMIL  443 (529)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHh-------CCc---eeeHhHhhhhccccCeEE
Confidence            57899999999999999999997 5789999999997543 22222211       000   01112222222 357888


Q ss_pred             EEcCCCChh--hh-ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          241 SLHPVLDKT--TY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       241 ~l~~plt~~--t~-~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      +.+.|..-.  +. ..++.   ..++++.+++++.=.+ .++.-|.+|=+.|
T Consensus       444 INtT~vGm~~~~~~~pl~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G  491 (529)
T PLN02520        444 ANTTSVGMQPNVDETPISK---HALKHYSLVFDAVYTP-KITRLLREAEESG  491 (529)
T ss_pred             EecccCCCCCCCCCCcccH---hhCCCCCEEEEeccCC-CcCHHHHHHHHCC
Confidence            888874421  11 11222   3455667777774433 2344444444444

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.66  E-value=0.084  Score=54.11  Aligned_cols=92  Identities=14%  Similarity=0.198  Sum_probs=58.1

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH----hhcCCEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV~  241 (328)
                      .++-|+|+|++|+.+|+.| +..|.++++.|.+++.. ++        +++.+.... .....+.+-+    ++++|.++
T Consensus       418 ~hiiI~G~G~~G~~la~~L-~~~g~~vvvId~d~~~~-~~--------~~~~g~~~i-~GD~~~~~~L~~a~i~~a~~vi  486 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKL-LAAGIPLVVIETSRTRV-DE--------LRERGIRAV-LGNAANEEIMQLAHLDCARWLL  486 (558)
T ss_pred             CCEEEECCChHHHHHHHHH-HHCCCCEEEEECCHHHH-HH--------HHHCCCeEE-EcCCCCHHHHHhcCccccCEEE
Confidence            4689999999999999997 68899999999886532 21        112222111 1112232222    56899999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEE
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVN  270 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN  270 (328)
                      ++.+...++..++-.  ..++.+...+|-
T Consensus       487 v~~~~~~~~~~iv~~--~~~~~~~~~iia  513 (558)
T PRK10669        487 LTIPNGYEAGEIVAS--AREKRPDIEIIA  513 (558)
T ss_pred             EEcCChHHHHHHHHH--HHHHCCCCeEEE
Confidence            999876666555433  233445655553

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.66  E-value=0.29  Score=48.43  Aligned_cols=117  Identities=21%  Similarity=0.196  Sum_probs=69.3

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc-CCEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVIS  241 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-aDiV~  241 (328)
                      +.||++.|+|.|.+|+++|+.| ...|++|.++|+......+. .+    .++..|...   .......+++.. .|+|+
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l-~~~G~~V~~~d~~~~~~~~~-~~----~l~~~g~~~---~~~~~~~~~~~~~~d~vV   73 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLL-HKLGANVTVNDGKPFSENPE-AQ----ELLEEGIKV---ICGSHPLELLDEDFDLMV   73 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCCccchhH-HH----HHHhcCCEE---EeCCCCHHHhcCcCCEEE
Confidence            6789999999999999999997 58899999999764321110 00    011222211   111122344554 89887


Q ss_pred             EcC--CCC-hh-------hhccccHHHH-hcC-CCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          242 LHP--VLD-KT-------TYHLINKERL-ATM-KKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       242 l~~--plt-~~-------t~~li~~~~~-~~m-k~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      ..-  |.+ |.       ...++.+..| ..+ +...+-|--+.|..--..-|...|+.
T Consensus        74 ~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~  132 (447)
T PRK02472         74 KNPGIPYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA  132 (447)
T ss_pred             ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            755  222 21       1123443333 233 33456666678988888888888875

>PRK08328 hypothetical protein; Provisional

Probab=94.60  E-value=0.098  Score=47.49  Aligned_cols=106  Identities=22%  Similarity=0.243  Sum_probs=62.5

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHH-------hhhhh---------hhhcC-CCCCc
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFV-------TAYGQ---------FLKAN-GEQPV  222 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~-------~~~~~---------~~~~~-~~~~~  222 (328)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-+. ....       +..+.         .++.- .....
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La-~~Gvg~i~lvD~D~ve~-sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v  100 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLA-AAGVGRILLIDEQTPEL-SNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKI  100 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCccCh-hhhccccccChhhcCchHHHHHHHHHHHHhCCCCEE
Confidence            5699999999999999999999985 6676 687888653210 0000       00000         00000 00000


Q ss_pred             c----ccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          223 T----WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       223 ~----~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .    .....+++++++++|+|+.|+- +.+++.++++...+.   +.-+|+.+
T Consensus       101 ~~~~~~~~~~~~~~~l~~~D~Vid~~d-~~~~r~~l~~~~~~~---~ip~i~g~  150 (231)
T PRK08328        101 ETFVGRLSEENIDEVLKGVDVIVDCLD-NFETRYLLDDYAHKK---GIPLVHGA  150 (231)
T ss_pred             EEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHc---CCCEEEEe
Confidence            0    0012346678999999998886 477888887655443   44456543

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=94.51  E-value=0.15  Score=49.70  Aligned_cols=101  Identities=17%  Similarity=0.125  Sum_probs=62.0

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh------------------HHHHHHhhhhhhhhcCCCCC
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT------------------RLEKFVTAYGQFLKANGEQP  221 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~------------------~~~~~~~~~~~~~~~~~~~~  221 (328)
                      ..|.+++|.|||+|.+|..+|+.|+ ..|. ++..+|...-.                  +.+.....+.+....-....
T Consensus        37 ~~l~~~~VliiG~GglG~~v~~~La-~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~  115 (370)
T PRK05600         37 ERLHNARVLVIGAGGLGCPAMQSLA-SAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNA  115 (370)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEE
Confidence            5699999999999999999999984 6786 78888876211                  00000000000000000000


Q ss_pred             cc-ccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCC
Q 020301          222 VT-WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (328)
Q Consensus       222 ~~-~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk  263 (328)
                      .. .....+++++++++|+|+.|+- +.+++.++|+...+.-+
T Consensus       116 ~~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~~~i  157 (370)
T PRK05600        116 LRERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEITGT  157 (370)
T ss_pred             eeeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence            00 0011346688999999977765 68899999887666544

>PLN02602 lactate dehydrogenase

Probab=94.50  E-value=0.19  Score=48.65  Aligned_cols=102  Identities=18%  Similarity=0.218  Sum_probs=58.7

Q ss_pred             CEEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCC-ccccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      ++|+|||.|.+|..+|-.++ +++.-++..+|...........|-.. ..   .... .......+.++ ++.||+|+++
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~-~~---~~~~~~~i~~~~dy~~-~~daDiVVit  112 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQH-AA---AFLPRTKILASTDYAV-TAGSDLCIVT  112 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHh-hh---hcCCCCEEEeCCCHHH-hCCCCEEEEC
Confidence            69999999999999998764 24445899999876432211111100 00   0000 11111134444 8999999998


Q ss_pred             CCCC--h-hhh-ccc--c-------HHHHhcCCCCcEEEEcC
Q 020301          244 PVLD--K-TTY-HLI--N-------KERLATMKKEAILVNCS  272 (328)
Q Consensus       244 ~plt--~-~t~-~li--~-------~~~~~~mk~ga~lIN~a  272 (328)
                      .-..  + +|| .++  |       ...+....|.+++|+++
T Consensus       113 AG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt  154 (350)
T PLN02602        113 AGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS  154 (350)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            5432  1 233 222  1       12334456889999997

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=94.49  E-value=0.06  Score=45.73  Aligned_cols=36  Identities=22%  Similarity=0.367  Sum_probs=28.4

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEc-CCchhH
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQATR  202 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d-~~~~~~  202 (328)
                      +|||-|||+||+.+++.+...-.++|.+.+ +.+..+
T Consensus         2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~   38 (151)
T PF00044_consen    2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPE   38 (151)
T ss_dssp             EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHH
T ss_pred             EEEEECCCcccHHHHHhhcccceEEEEEEecccccch
Confidence            699999999999999997656788988774 442443

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=94.45  E-value=0.051  Score=52.23  Aligned_cols=34  Identities=24%  Similarity=0.423  Sum_probs=30.4

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      ||||||-|..|+.+++.+ +.+|.+|+++|+++..
T Consensus         1 ~igiiG~gql~~~l~~aa-~~lG~~v~~~d~~~~~   34 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAA-RPLGIKVHVLDPDANS   34 (352)
T ss_pred             CEEEECCCHHHHHHHHHH-HHcCCEEEEECCCCCC
Confidence            599999999999999995 7899999999987643

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.44  E-value=0.12  Score=49.93  Aligned_cols=98  Identities=27%  Similarity=0.196  Sum_probs=61.2

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh------------------HHHHHHhhhhhhhhcCC-CC
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT------------------RLEKFVTAYGQFLKANG-EQ  220 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~------------------~~~~~~~~~~~~~~~~~-~~  220 (328)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-.                  +.+...+    .+++-. ..
T Consensus        24 ~~L~~~~VlivG~GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~----~l~~~np~v   98 (355)
T PRK05597         24 QSLFDAKVAVIGAGGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESARE----AMLALNPDV   98 (355)
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHH----HHHHHCCCc
Confidence            4699999999999999999999985 6676 68888875311                  0000000    011000 00


Q ss_pred             Cccc--cc--cCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCC
Q 020301          221 PVTW--KR--ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK  264 (328)
Q Consensus       221 ~~~~--~~--~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~  264 (328)
                      ....  ..  ..+..++++.+|+|+.|.- +.+++.++|....+.-+|
T Consensus        99 ~v~~~~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~~~ip  145 (355)
T PRK05597         99 KVTVSVRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAARLGIP  145 (355)
T ss_pred             EEEEEEeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence            0000  01  1234678999999988875 678888888877665444

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.41  E-value=0.21  Score=47.95  Aligned_cols=127  Identities=18%  Similarity=0.246  Sum_probs=93.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH---hhcCCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDiV~l  242 (328)
                      ..+|+||++.||+.++-.+ ..-|+.|.+|+|+.++.. ++.++     +..+..   .....|++++   +++-..|.+
T Consensus         7 ~digLiGLaVMGqnLiLN~-~d~Gf~v~~yNRT~skvD-~flan-----eak~~~---i~ga~S~ed~v~klk~PR~iil   76 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNI-ADKGFTVCAYNRTTSKVD-EFLAN-----EAKGTK---IIGAYSLEDFVSKLKKPRVIIL   76 (487)
T ss_pred             cchhhhhHhhhhhhhhhcc-cccCceEEEeccchHhHH-HHHHH-----hhcCCc---ccCCCCHHHHHHhcCCCcEEEE
Confidence            3589999999999999986 578999999999986532 22221     122222   2234677877   445566766


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP  303 (328)
                      .+-...-... +-++....|.+|-++|+-+-..--|+.--.+.|.+..|...+.-|.-.|.
T Consensus        77 lvkAG~pVD~-~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEE  136 (487)
T KOG2653|consen   77 LVKAGAPVDQ-FIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEE  136 (487)
T ss_pred             EeeCCCcHHH-HHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCccc
Confidence            6654443333 44777788999999999999998999999999999888889999988875

>PRK06153 hypothetical protein; Provisional

Probab=94.41  E-value=0.15  Score=49.64  Aligned_cols=108  Identities=18%  Similarity=0.187  Sum_probs=64.1

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch--------------hHH-H--HHHhhhhhhhhcCC--CCC
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--------------TRL-E--KFVTAYGQFLKANG--EQP  221 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~--------------~~~-~--~~~~~~~~~~~~~~--~~~  221 (328)
                      .|.+++|+|||+|-+|..++..|+ ..|. ++..+|...-              ... +  ...+...+......  ..+
T Consensus       173 kL~~~~VaIVG~GG~GS~Va~~LA-R~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~  251 (393)
T PRK06153        173 KLEGQRIAIIGLGGTGSYILDLVA-KTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVP  251 (393)
T ss_pred             HHhhCcEEEEcCCccHHHHHHHHH-HcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEE
Confidence            689999999999999999999985 5565 7888886521              000 0  00111111111111  101


Q ss_pred             cc-ccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          222 VT-WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       222 ~~-~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      .. .....++ +.+..+|+|+.|+- +.+++.++++...+.   +.-+|+++=|-
T Consensus       252 ~~~~I~~~n~-~~L~~~DiV~dcvD-n~~aR~~ln~~a~~~---gIP~Id~G~~l  301 (393)
T PRK06153        252 HPEYIDEDNV-DELDGFTFVFVCVD-KGSSRKLIVDYLEAL---GIPFIDVGMGL  301 (393)
T ss_pred             EeecCCHHHH-HHhcCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEeeecc
Confidence            00 0011122 35788999999987 566788888777654   44577776553

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.40  E-value=0.22  Score=48.51  Aligned_cols=89  Identities=22%  Similarity=0.319  Sum_probs=60.0

Q ss_pred             cCCCEEEEEecC----------HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHH
Q 020301          163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (328)
Q Consensus       163 l~g~tvgIiG~G----------~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  232 (328)
                      |.|||+||+|+-          .-...++++| +..|++|.+|||-.......            .. + ......++++
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L-~~~Ga~V~aYDP~a~~~~~~------------~~-~-~~~~~~~~~~  372 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRL-QEKGAEVIAYDPVAMENAFR------------NF-P-DVELESDAEE  372 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHH-HHCCCEEEEECchhhHHHHh------------cC-C-CceEeCCHHH
Confidence            899999999984          4456788987 68999999999965432110            00 0 1234579999


Q ss_pred             HhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEE
Q 020301          233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN  270 (328)
Q Consensus       233 ll~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN  270 (328)
                      .++.||+++++.- -++.+. ++-+.+ .|| +.++++
T Consensus       373 ~~~~aDaivi~te-w~ef~~-~d~~~~-~m~-~~~v~D  406 (414)
T COG1004         373 ALKGADAIVINTE-WDEFRD-LDFEKL-LMK-TPVVID  406 (414)
T ss_pred             HHhhCCEEEEecc-HHHHhc-cChhhh-hcc-CCEEEe
Confidence            9999999998854 234444 333344 666 445554

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=94.33  E-value=0.082  Score=52.59  Aligned_cols=134  Identities=22%  Similarity=0.231  Sum_probs=77.4

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      ..|++|.|+|+|.-|.++|+.| ...|++|+++|..+.+.......     ....+.. ....  ....+.+..+|+|+.
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L-~~~G~~v~v~D~~~~~~~~~~~~-----~~~~~i~-~~~g--~~~~~~~~~~d~vV~   75 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFL-LKLGAEVTVSDDRPAPEGLAAQP-----LLLEGIE-VELG--SHDDEDLAEFDLVVK   75 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHH-HHCCCeEEEEcCCCCccchhhhh-----hhccCce-eecC--ccchhccccCCEEEE
Confidence            4499999999999999999997 68999999999766541110000     0001111 1110  112267889999987


Q ss_pred             cCCCChhhh----------cccc-HHHHhcC-CCC-cEEEEcCCCcccCHHHHHHHHHc--------CCccEEEEeCCCC
Q 020301          243 HPVLDKTTY----------HLIN-KERLATM-KKE-AILVNCSRGPVIDEVALVEHLKQ--------NPMFRVGLDVFED  301 (328)
Q Consensus       243 ~~plt~~t~----------~li~-~~~~~~m-k~g-a~lIN~aRG~~vde~aL~~aL~~--------g~i~gaalDV~~~  301 (328)
                      .---.+.+.          .++. -+.|-+. ++. .+-|--+-|..=-+.-+...|++        |.|...++|+.++
T Consensus        76 SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~  155 (448)
T COG0771          76 SPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQ  155 (448)
T ss_pred             CCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcc
Confidence            632222211          1222 2233332 122 44444456776666666665554        5567788899987


Q ss_pred             CCCC
Q 020301          302 EPYM  305 (328)
Q Consensus       302 EP~~  305 (328)
                      ++.+
T Consensus       156 ~~~~  159 (448)
T COG0771         156 AEPA  159 (448)
T ss_pred             cCCC
Confidence            5543

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.31  E-value=0.15  Score=50.95  Aligned_cols=115  Identities=18%  Similarity=0.265  Sum_probs=71.3

Q ss_pred             cCCCEEEEEecCHHHHH-HHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          163 LKGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~-vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      ..++++.|+|+|..|.+ +|+.| +..|.+|.++|....+..++        +++.|....   ...+ .+.+..+|+|+
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L-~~~G~~V~~~D~~~~~~~~~--------l~~~gi~~~---~~~~-~~~~~~~d~vv   71 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVL-LNLGYKVSGSDLKESAVTQR--------LLELGAIIF---IGHD-AENIKDADVVV   71 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHH-HhCCCeEEEECCCCChHHHH--------HHHCCCEEe---CCCC-HHHCCCCCEEE
Confidence            56789999999999999 79987 68999999999865432221        111122111   1112 34567899987


Q ss_pred             EcC--CCC-hhhh-------ccccHHHH-hc-CC-CCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301          242 LHP--VLD-KTTY-------HLINKERL-AT-MK-KEAILVNCSRGPVIDEVALVEHLKQNP  290 (328)
Q Consensus       242 l~~--plt-~~t~-------~li~~~~~-~~-mk-~ga~lIN~aRG~~vde~aL~~aL~~g~  290 (328)
                      ..-  |.+ |.-+       .++++-.| .+ ++ ...+-|--+.|..--..-+...|+...
T Consensus        72 ~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         72 YSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            653  322 2211       34554443 33 33 235666667899888888888887543

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.30  E-value=0.14  Score=53.04  Aligned_cols=96  Identities=17%  Similarity=0.243  Sum_probs=61.4

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH----hhcCCEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI  240 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV  240 (328)
                      ..++-|+|+|++|+.+|+.| +..|.++++.|.+++.. +.        +++.|.. .-....++.+-+    +++||.+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v-~~--------~~~~g~~-v~~GDat~~~~L~~agi~~A~~v  468 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLL-MANKMRITVLERDISAV-NL--------MRKYGYK-VYYGDATQLELLRAAGAEKAEAI  468 (601)
T ss_pred             cCCEEEecCchHHHHHHHHH-HhCCCCEEEEECCHHHH-HH--------HHhCCCe-EEEeeCCCHHHHHhcCCccCCEE
Confidence            35799999999999999997 68899999999886532 21        1222321 111122333322    6789999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      +++.+..+++..++  ...+++.|...+|-.+|
T Consensus       469 v~~~~d~~~n~~i~--~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        469 VITCNEPEDTMKIV--ELCQQHFPHLHILARAR  499 (601)
T ss_pred             EEEeCCHHHHHHHH--HHHHHHCCCCeEEEEeC
Confidence            99999655554433  33455666666665544

>PRK07806 short chain dehydrogenase; Provisional

Probab=94.20  E-value=0.23  Score=44.59  Aligned_cols=37  Identities=27%  Similarity=0.375  Sum_probs=31.7

Q ss_pred             cCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       163 l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      +.|+++.|.|. |.||+.+++.|+ .-|.+|++.+|+..
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~-~~G~~V~~~~r~~~   41 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILA-GAGAHVVVNYRQKA   41 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHH-HCCCEEEEEeCCch
Confidence            67899999996 899999999974 67999998887653

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=94.19  E-value=0.25  Score=46.87  Aligned_cols=124  Identities=19%  Similarity=0.345  Sum_probs=65.2

Q ss_pred             CEEEEEec-CHHHHHHHHHHHhcCCc--EEEEEcCCch-hHHHH-HHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          166 QTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQA-TRLEK-FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~~fg~--~V~~~d~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ++|+|+|. |.+|..+|..++ ..|.  +|+.+|+... +..+. ..+.+.. +...+.. .......+.+ .++.||+|
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~-~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~-~~~~~~~-~~i~~~~d~~-~l~~aDiV   76 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLA-KEDVVKEINLISRPKSLEKLKGLRLDIYDA-LAAAGID-AEIKISSDLS-DVAGSDIV   76 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEECcccccccccccchhhhc-hhccCCC-cEEEECCCHH-HhCCCCEE
Confidence            47999998 999999999874 4443  6999998531 11111 1111100 0000100 1111123444 48999999


Q ss_pred             EEcCCCCh---hhh--------cccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH----HHcCCccEEE
Q 020301          241 SLHPVLDK---TTY--------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEH----LKQNPMFRVG  295 (328)
Q Consensus       241 ~l~~plt~---~t~--------~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~a----L~~g~i~gaa  295 (328)
                      +++.....   +++        .++.  ...+....+++++|+++  ..+|.-..+-.    +...++.|.+
T Consensus        77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~g  146 (309)
T cd05294          77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGLG  146 (309)
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeecc
Confidence            99986321   121        1111  11234445678888886  56665543322    3345566664

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=94.17  E-value=0.3  Score=46.08  Aligned_cols=99  Identities=17%  Similarity=0.204  Sum_probs=56.7

Q ss_pred             EEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          168 VGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       168 vgIiG~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      ++|||.|.+|..+|-.++ ..|  -++..+|+..........+ .......  ..........+ .+.++.||+|+++..
T Consensus         1 i~iiGaG~VG~~~a~~l~-~~~~~~el~l~D~~~~~~~g~~~D-L~~~~~~--~~~~~i~~~~~-~~~l~~aDiVIitag   75 (300)
T cd00300           1 ITIIGAGNVGAAVAFALI-AKGLASELVLVDVNEEKAKGDALD-LSHASAF--LATGTIVRGGD-YADAADADIVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCccHHHHHHHh-HHHhccc--cCCCeEEECCC-HHHhCCCCEEEEcCC
Confidence            589999999999999864 555  5899999976432111111 1000000  00011111234 457899999999986


Q ss_pred             CChhhhc------------ccc--HHHHhcCCCCcEEEEcC
Q 020301          246 LDKTTYH------------LIN--KERLATMKKEAILVNCS  272 (328)
Q Consensus       246 lt~~t~~------------li~--~~~~~~mk~ga~lIN~a  272 (328)
                      . +...+            ++.  ...+....|++++||++
T Consensus        76 ~-p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s  115 (300)
T cd00300          76 A-PRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS  115 (300)
T ss_pred             C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            3 22111            111  12333445899999997

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.15  E-value=0.15  Score=46.59  Aligned_cols=101  Identities=17%  Similarity=0.239  Sum_probs=60.5

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HH-------HH-----HhhhhhhhhcCC-CCCccc
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-------KF-----VTAYGQFLKANG-EQPVTW  224 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~~-------~~-----~~~~~~~~~~~~-~~~~~~  224 (328)
                      ..|.+++|.|+|.|.+|..+|+.|+ ..|. ++..+|+..-..  +.       ..     .+.-.+.+++-. ......
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~   98 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLA-AAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINP   98 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEE
Confidence            4589999999999999999999985 5665 677777653211  00       00     000000000000 000000


Q ss_pred             --cc--cCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCC
Q 020301          225 --KR--ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (328)
Q Consensus       225 --~~--~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk  263 (328)
                        ..  ..+++++++++|+|+.+.- +.+++.++|+...+.-+
T Consensus        99 ~~~~i~~~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~~~i  140 (240)
T TIGR02355        99 INAKLDDAELAALIAEHDIVVDCTD-NVEVRNQLNRQCFAAKV  140 (240)
T ss_pred             EeccCCHHHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHHcCC
Confidence              01  1236678999999998874 68889889887766533

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.13  E-value=0.19  Score=50.56  Aligned_cols=117  Identities=16%  Similarity=0.163  Sum_probs=70.0

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ..+.++++.|+|+|.+|+++|+.| ...|++|.++|+..... .+..+       ..|..   ........+.+..+|+|
T Consensus        11 ~~~~~~~v~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~-~~~l~-------~~gi~---~~~~~~~~~~~~~~d~v   78 (473)
T PRK00141         11 PQELSGRVLVAGAGVSGRGIAAML-SELGCDVVVADDNETAR-HKLIE-------VTGVA---DISTAEASDQLDSFSLV   78 (473)
T ss_pred             ccccCCeEEEEccCHHHHHHHHHH-HHCCCEEEEECCChHHH-HHHHH-------hcCcE---EEeCCCchhHhcCCCEE
Confidence            357889999999999999999997 68899999999764332 11111       11211   11111223445778988


Q ss_pred             EEc--CC-CChhh-------hccccHHHHhc-------C-CC-CcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          241 SLH--PV-LDKTT-------YHLINKERLAT-------M-KK-EAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       241 ~l~--~p-lt~~t-------~~li~~~~~~~-------m-k~-ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      +..  +| .+|+.       ..++++-.+..       + ++ ..+-|--+-|..--..-|...|+..
T Consensus        79 V~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~  146 (473)
T PRK00141         79 VTSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG  146 (473)
T ss_pred             EeCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            765  33 22321       12334333321       1 12 3455555678888888888888763

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=94.10  E-value=0.09  Score=51.78  Aligned_cols=36  Identities=22%  Similarity=0.417  Sum_probs=28.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQAT  201 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~-~d~~~~~  201 (328)
                      .++||.|||+||+.++|.+...++++|++ +|+....
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~  122 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDA  122 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCH
Confidence            48999999999999999853248999888 6655443

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.10  E-value=0.14  Score=51.44  Aligned_cols=116  Identities=20%  Similarity=0.192  Sum_probs=69.6

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      +.|++++|+|+|.-|+++|+.| ...|++|+++|.......+.. .    .++..+..   .....+ .+.+.++|+|+.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l-~~~g~~v~~~d~~~~~~~~~~-~----~l~~~~~~---~~~~~~-~~~~~~~d~vV~   75 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRAL-RAHLPAQALTLFCNAVEAREV-G----ALADAALL---VETEAS-AQRLAAFDVVVK   75 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHH-HHcCCEEEEEcCCCcccchHH-H----HHhhcCEE---EeCCCC-hHHccCCCEEEE
Confidence            4689999999999999999997 689999999996543221110 0    01111110   001112 355678999976


Q ss_pred             cC--CCC-hhh-------hccccHHHH--hc-CC-----CCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          243 HP--VLD-KTT-------YHLINKERL--AT-MK-----KEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       243 ~~--plt-~~t-------~~li~~~~~--~~-mk-----~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      .-  |.+ |.-       ..++++-.|  .. ++     +..+-|--+-|..--..-|...|+.
T Consensus        76 SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~  139 (468)
T PRK04690         76 SPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA  139 (468)
T ss_pred             CCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence            53  322 211       124554443  33 32     2356666677888877778877875

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.09  E-value=0.13  Score=48.81  Aligned_cols=36  Identities=25%  Similarity=0.346  Sum_probs=28.6

Q ss_pred             EEEEEecCHHHHHHHHHHHhcC-CcEEEEEcCCchhH
Q 020301          167 TVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATR  202 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~f-g~~V~~~d~~~~~~  202 (328)
                      +|||=|||+||+.+++.+...- .|+|++.+...++.
T Consensus         3 kV~INGfGrIGR~v~ra~~~~~~dieVVaInd~t~~~   39 (335)
T COG0057           3 KVAINGFGRIGRLVARAALERDGDIEVVAINDLTDPD   39 (335)
T ss_pred             EEEEecCcHHHHHHHHHHHhCCCCeEEEEEecCCCHH
Confidence            7999999999999999975444 49999987643333

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=94.08  E-value=0.21  Score=47.77  Aligned_cols=32  Identities=22%  Similarity=0.352  Sum_probs=24.4

Q ss_pred             EEEEEecCHHHHHHHHHHHhcC----CcEEEEEcCCc
Q 020301          167 TVGVIGAGRIGSAYARMMVEGF----KMNLIYYDLYQ  199 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~f----g~~V~~~d~~~  199 (328)
                      +|||+|+|+||+.+.+.+. ..    +++|...+...
T Consensus         1 ~IaInGfGrIGR~vlr~l~-e~~~~~~~~vvaInd~~   36 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALY-ESGERLGIEVVALNELA   36 (325)
T ss_pred             CEEEECCCHHHHHHHHHHH-hcCCCCCeEEEEEecCC
Confidence            4899999999999999864 33    37877765433

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=94.03  E-value=0.35  Score=46.53  Aligned_cols=103  Identities=12%  Similarity=0.222  Sum_probs=64.2

Q ss_pred             ccCCCEEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       162 ~l~g~tvgIiG~---G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      .+.|+||+++|=   +++..+.+..++.-+|++|.+..|..-...++..+    .++..|   .......++++.++.||
T Consensus       156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~----~~~~~g---~~~~~~~d~~ea~~~aD  228 (338)
T PRK08192        156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVIS----DIENAG---HKITITDQLEGNLDKAD  228 (338)
T ss_pred             CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHH----HHHHcC---CeEEEEcCHHHHHccCC
Confidence            588999999998   57888888765434599999988753211111111    111212   12233479999999999


Q ss_pred             EEEEcCCCCh------h-----hhccccHHHH-hcCCCCcEEEEc
Q 020301          239 VISLHPVLDK------T-----TYHLINKERL-ATMKKEAILVNC  271 (328)
Q Consensus       239 iV~l~~plt~------~-----t~~li~~~~~-~~mk~ga~lIN~  271 (328)
                      +|..-.-..+      +     -.-.++++.+ +.+|+++++.-+
T Consensus       229 vvyt~~~q~e~~~~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHc  273 (338)
T PRK08192        229 ILYLTRIQEERFPSQEEANKYRGKFRLNQSIYTQHCKSNTVIMHP  273 (338)
T ss_pred             EEEEcCcccccccchHHHHHhhhccccCHHHHHhhhCCCCEEECC
Confidence            9987321111      1     0134567777 458888888765

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=94.01  E-value=0.25  Score=46.77  Aligned_cols=69  Identities=23%  Similarity=0.375  Sum_probs=45.7

Q ss_pred             CEEEEEecCHHHH-HHHHHHHhcCC--cE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc--CCE
Q 020301          166 QTVGVIGAGRIGS-AYARMMVEGFK--MN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV  239 (328)
Q Consensus       166 ~tvgIiG~G~IG~-~vA~~l~~~fg--~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDi  239 (328)
                      .++||||+|.+++ ..+..+ +..+  +. |.++|++... .+++.+.|       +..    ..+.+++++++.  -|+
T Consensus         4 irvgiiG~G~~~~~~~~~~~-~~~~~~~~~vav~d~~~~~-a~~~a~~~-------~~~----~~~~~~~~ll~~~~iD~   70 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPAL-AALGGGLELVAVVDRDPER-AEAFAEEF-------GIA----KAYTDLEELLADPDIDA   70 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHH-HhCCCceEEEEEecCCHHH-HHHHHHHc-------CCC----cccCCHHHHhcCCCCCE
Confidence            4799999997775 466665 4554  34 5566887654 33333333       211    245799999997  489


Q ss_pred             EEEcCCCC
Q 020301          240 ISLHPVLD  247 (328)
Q Consensus       240 V~l~~plt  247 (328)
                      |+++.|..
T Consensus        71 V~Iatp~~   78 (342)
T COG0673          71 VYIATPNA   78 (342)
T ss_pred             EEEcCCCh
Confidence            99999943

>PRK12937 short chain dehydrogenase; Provisional

Probab=93.92  E-value=0.27  Score=43.83  Aligned_cols=38  Identities=26%  Similarity=0.187  Sum_probs=30.8

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .+.++++.|.|. |.||+.+|+.|+ ..|.+|+...++..
T Consensus         2 ~~~~~~vlItG~~~~iG~~la~~l~-~~g~~v~~~~~~~~   40 (245)
T PRK12937          2 TLSNKVAIVTGASRGIGAAIARRLA-ADGFAVAVNYAGSA   40 (245)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEecCCCH
Confidence            367899999995 999999999984 67999887765543

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=93.89  E-value=0.3  Score=46.46  Aligned_cols=94  Identities=15%  Similarity=0.156  Sum_probs=63.2

Q ss_pred             cCCCEEEEEec---CHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       163 l~g~tvgIiG~---G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      +.|.+|+++|=   +++..+++..+ ..||+ +|.+..|..-.  +.            ...........++++.++.||
T Consensus       155 l~g~~va~vGD~~~~rv~~Sl~~~~-a~~g~~~v~~~~P~~~~--p~------------~~~~~~~~~~~d~~ea~~~aD  219 (310)
T PRK13814        155 WNKLCVTIIGDIRHSRVANSLMDGL-VTMGVPEIRLVGPSSLL--PD------------KVGNDSIKKFTELKPSLLNSD  219 (310)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHH-HHcCCCEEEEeCCcccC--cC------------ccccceEEEEcCHHHHhCCCC
Confidence            67999999998   59999999986 68999 99998875311  00            000012333578999999999


Q ss_pred             EEEEcCCCC-----hh----h--hccccHHHHhcCCCCcEEEEc
Q 020301          239 VISLHPVLD-----KT----T--YHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       239 iV~l~~plt-----~~----t--~~li~~~~~~~mk~ga~lIN~  271 (328)
                      +|...-=..     +.    .  .-.++++.++.+|+++++.=+
T Consensus       220 vvy~~~~~~er~~~~~~~~~~~~~y~v~~~~l~~a~~~~i~mHc  263 (310)
T PRK13814        220 VIVTLRLQKERHDNSVDIDAFRGSFRLTPEKLYSAKPDAIVMHP  263 (310)
T ss_pred             EEEECccccccccchhHHHHhCCCcccCHHHHHhcCCCCEEECC
Confidence            996521111     01    1  134677777778888777766

>PRK05086 malate dehydrogenase; Provisional

Probab=93.82  E-value=0.32  Score=46.20  Aligned_cols=107  Identities=22%  Similarity=0.233  Sum_probs=61.0

Q ss_pred             CEEEEEec-CHHHHHHHHHHHh--cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcccc--ccCCHHHHhhcCCEE
Q 020301          166 QTVGVIGA-GRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK--RASSMDEVLREADVI  240 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~--~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV  240 (328)
                      ++++|||. |.||+.+|..++.  .++..+..+|+.+..... ..+ +    .+... .....  ...++.+.++.||+|
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~-alD-l----~~~~~-~~~i~~~~~~d~~~~l~~~DiV   73 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGV-AVD-L----SHIPT-AVKIKGFSGEDPTPALEGADVV   73 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcce-ehh-h----hcCCC-CceEEEeCCCCHHHHcCCCCEE
Confidence            47999999 9999999977533  455688999986432100 001 0    01010 01111  124667888999999


Q ss_pred             EEcCCCChh---hh-cc------ccHHHHhcC---CCCcEEEEcCCCcccCHHH
Q 020301          241 SLHPVLDKT---TY-HL------INKERLATM---KKEAILVNCSRGPVIDEVA  281 (328)
Q Consensus       241 ~l~~plt~~---t~-~l------i~~~~~~~m---k~ga~lIN~aRG~~vde~a  281 (328)
                      +++.-....   ++ .+      +-++..+.|   .+.+++++++-  .+|.-+
T Consensus        74 IitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN--P~D~~t  125 (312)
T PRK05086         74 LISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN--PVNTTV  125 (312)
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC--chHHHH
Confidence            998764221   11 11      223333334   57889999954  455433

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=93.81  E-value=0.19  Score=47.67  Aligned_cols=74  Identities=20%  Similarity=0.262  Sum_probs=43.8

Q ss_pred             EEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCC-CC-cc-ccccCCHHHHhhcCCEEEE
Q 020301          167 TVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QP-VT-WKRASSMDEVLREADVISL  242 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~-~~-~~~~~~l~ell~~aDiV~l  242 (328)
                      +|+|||.|.+|..+|..|+ +++.-++..+|........+..| +    .+... .. .. ..+..+ .+.++.||+|++
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~D-L----~~~~~~~~~~~~~i~~~~-y~~~~~aDivvi   74 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALD-F----HHATALTYSTNTKIRAGD-YDDCADADIIVI   74 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHH-H----HhhhccCCCCCEEEEECC-HHHhCCCCEEEE
Confidence            5899999999999998764 24444799999875432211111 1    11011 00 01 111223 467899999998


Q ss_pred             cCCC
Q 020301          243 HPVL  246 (328)
Q Consensus       243 ~~pl  246 (328)
                      +.-.
T Consensus        75 taG~   78 (307)
T cd05290          75 TAGP   78 (307)
T ss_pred             CCCC
Confidence            7653

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=93.80  E-value=0.62  Score=43.72  Aligned_cols=105  Identities=16%  Similarity=0.138  Sum_probs=70.0

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      |++++|||--.=-..+++.| ...|++|..|.-....               .+..  +.......++.++++|+|++-+
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l-~~~g~~v~~~g~~~~~---------------~~~~--~~~~~~~~~~~~~~~~~~i~p~   62 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKL-EELDAKISLIGFDQLE---------------DGFT--GAVKCELLELDLTTLDVVILPV   62 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHH-HHCCCEEEEEeccccc---------------cccc--cceeecchhhhhccCCEEEECC
Confidence            68999999988888899997 5789988777532110               0001  2223345566699999999999


Q ss_pred             CCChhhh----------ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          245 VLDKTTY----------HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       245 plt~~t~----------~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      |.+.+..          --++++.+++|+++++ +-++    ++..+|-++.++..|.
T Consensus        63 ~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~  115 (287)
T TIGR02853        63 PGTSHDGKVATVFSNEKVVLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK  115 (287)
T ss_pred             ccccCCceEecccccCCccccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe
Confidence            9776632          1257899999997654 4444    3445666566655554

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=93.73  E-value=0.51  Score=43.51  Aligned_cols=130  Identities=22%  Similarity=0.208  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcC----Cc-------E
Q 020301          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------N  191 (328)
Q Consensus       123 vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~f----g~-------~  191 (328)
                      +|--+++-+++.+|-.                     |..|...++.|+|.|.-|-.+|+.+. ..    |.       +
T Consensus         4 TaaV~lAgll~Al~~~---------------------g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~G~~~~eA~~~   61 (255)
T PF03949_consen    4 TAAVVLAGLLNALRVT---------------------GKKLSDQRIVFFGAGSAGIGIARLLV-AAMVREGLSEEEARKR   61 (255)
T ss_dssp             HHHHHHHHHHHHHHHH---------------------TS-GGG-EEEEEB-SHHHHHHHHHHH-HHHHCTTS-HHHHHTT
T ss_pred             hHHHHHHHHHHHHHHh---------------------CCCHHHcEEEEeCCChhHHHHHHHHH-HHHHHhcCCHHHHhcc
Confidence            4555677777666532                     45689999999999999999999874 44    66       5


Q ss_pred             EEEEcCCc-----hhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC--CEEEEcCCCChhhhccccHHHHhcCCC
Q 020301          192 LIYYDLYQ-----ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKTTYHLINKERLATMKK  264 (328)
Q Consensus       192 V~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiV~l~~plt~~t~~li~~~~~~~mk~  264 (328)
                      ++.+|+.-     .+....+...|.   +.... .   ....+|.|+++.+  |+++=+-    ...++|+++.++.|.+
T Consensus        62 i~lvD~~Gll~~~r~~l~~~~~~~a---~~~~~-~---~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~  130 (255)
T PF03949_consen   62 IWLVDSKGLLTDDREDLNPHKKPFA---RKTNP-E---KDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAK  130 (255)
T ss_dssp             EEEEETTEEEBTTTSSHSHHHHHHH---BSSST-T---T--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHH
T ss_pred             EEEEeccceEeccCccCChhhhhhh---ccCcc-c---ccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhc
Confidence            88888751     111222222231   11111 1   1125999999999  9997552    2578999999999987


Q ss_pred             ---CcEEEEcCCCcc---cCHHHHHHH
Q 020301          265 ---EAILVNCSRGPV---IDEVALVEH  285 (328)
Q Consensus       265 ---ga~lIN~aRG~~---vde~aL~~a  285 (328)
                         ..++.=.|.-.-   +..++.+++
T Consensus       131 ~~erPIIF~LSNPt~~aE~~peda~~~  157 (255)
T PF03949_consen  131 HNERPIIFPLSNPTPKAECTPEDAYEW  157 (255)
T ss_dssp             HSSSEEEEE-SSSCGGSSS-HHHHHHT
T ss_pred             cCCCCEEEECCCCCCcccCCHHHHHhh
Confidence               899999988766   344444444

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.73  E-value=0.28  Score=46.86  Aligned_cols=96  Identities=17%  Similarity=0.188  Sum_probs=59.8

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc-hhHHHHHHhhhhhhhhcCCCCCccccccCCHHH--HhhcCCEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE--VLREADVI  240 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e--ll~~aDiV  240 (328)
                      .|.++.|+|.|.+|...++.+ +..|++|++.+++. .+...+....+       |...... ...++.+  .....|+|
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~a-k~~G~~vi~~~~~~~~~~~~~~~~~~-------Ga~~v~~-~~~~~~~~~~~~~~d~v  242 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLL-RLRGFEVYVLNRRDPPDPKADIVEEL-------GATYVNS-SKTPVAEVKLVGEFDLI  242 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEecCCCCHHHHHHHHHc-------CCEEecC-CccchhhhhhcCCCCEE
Confidence            588999999999999999984 89999999998742 11111122222       2211100 1112211  23458999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      +-++.. +.    .-.+.++.|+++..++.++.
T Consensus       243 id~~g~-~~----~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         243 IEATGV-PP----LAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             EECcCC-HH----HHHHHHHHccCCcEEEEEec
Confidence            988762 11    22567788999998888764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=93.63  E-value=0.16  Score=48.17  Aligned_cols=108  Identities=23%  Similarity=0.373  Sum_probs=59.8

Q ss_pred             CEEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcc--c-ccc-CCHHHHhhcCCEE
Q 020301          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT--W-KRA-SSMDEVLREADVI  240 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~-~~l~ell~~aDiV  240 (328)
                      ++|+|||.|.||+.+|-+|. +.++-++..||..... .+......     .+......  . ... .+ .+.++.||+|
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~-~~G~a~DL-----~~~~~~~~~~~~i~~~~~-y~~~~~aDiV   73 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEK-AEGVALDL-----SHAAAPLGSDVKITGDGD-YEDLKGADIV   73 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEccccc-ccchhcch-----hhcchhccCceEEecCCC-hhhhcCCCEE
Confidence            47999999999999998864 3566689999998332 11111000     01111110  0 111 12 4568999999


Q ss_pred             EEcC--CCChh-hhc-cc--cHH-------HHhcCCCCcEEEEcCCCcccCHHHH
Q 020301          241 SLHP--VLDKT-TYH-LI--NKE-------RLATMKKEAILVNCSRGPVIDEVAL  282 (328)
Q Consensus       241 ~l~~--plt~~-t~~-li--~~~-------~~~~mk~ga~lIN~aRG~~vde~aL  282 (328)
                      +++.  |..|. ||. ++  |..       .+..-.++++++.++  ..||.-+.
T Consensus        74 vitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt--NPvD~~ty  126 (313)
T COG0039          74 VITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT--NPVDILTY  126 (313)
T ss_pred             EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEec--CcHHHHHH
Confidence            9988  65554 432 22  111       222233567777663  34544433

>PRK06392 homoserine dehydrogenase; Provisional

Probab=93.61  E-value=0.37  Score=46.10  Aligned_cols=121  Identities=13%  Similarity=0.205  Sum_probs=63.4

Q ss_pred             EEEEEecCHHHHHHHHHHHh-------cCCcEEEEE-cCCchhHHHHH--HhhhhhhhhcCCC-CCccccccCCHHHHh-
Q 020301          167 TVGVIGAGRIGSAYARMMVE-------GFKMNLIYY-DLYQATRLEKF--VTAYGQFLKANGE-QPVTWKRASSMDEVL-  234 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~-------~fg~~V~~~-d~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~l~ell-  234 (328)
                      +|+|+|||++|+.+++.|.+       +++.+|.+. |++..-..+.-  .+..-++... +. ..... ...++++++ 
T Consensus         2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~~-~~~~~~~ll~   79 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEIDY-EKIKFDEIFE   79 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCCC-CcCCHHHHhc
Confidence            79999999999999998743       267786644 54321000000  0000000111 10 00000 112566664 


Q ss_pred             hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCC
Q 020301          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNP  290 (328)
Q Consensus       235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~v-de~aL~~aL~~g~  290 (328)
                      ..+|+|+=|.|...+-..- -.-..+.++.|.-+|-..-|.+. .-+.|.++.+++.
T Consensus        80 ~~~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g  135 (326)
T PRK06392         80 IKPDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNR  135 (326)
T ss_pred             CCCCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcC
Confidence            4679999888743211111 12234456678788877777765 4566666666543

>PRK04148 hypothetical protein; Provisional

Probab=93.61  E-value=0.24  Score=41.20  Aligned_cols=36  Identities=17%  Similarity=0.278  Sum_probs=31.7

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .++++..||+| -|..+|+.| +..|.+|++.|.++..
T Consensus        16 ~~~kileIG~G-fG~~vA~~L-~~~G~~ViaIDi~~~a   51 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKL-KESGFDVIVIDINEKA   51 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHH-HHCCCEEEEEECCHHH
Confidence            46789999999 899999997 5789999999998764

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=93.59  E-value=0.26  Score=46.84  Aligned_cols=103  Identities=20%  Similarity=0.289  Sum_probs=59.8

Q ss_pred             EEEEEec-CHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc---cCCHHHHhhcCCEEE
Q 020301          167 TVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADVIS  241 (328)
Q Consensus       167 tvgIiG~-G~IG~~vA~~l~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~aDiV~  241 (328)
                      +|+|||. |.+|..+|-.|+. .+.-++..+|... ..- ...|     + .+.........   ..++.+.++.||+|+
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g-~a~D-----L-~~~~~~~~i~~~~~~~~~~~~~~daDivv   72 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAG-VAAD-----L-SHIPTAASVKGFSGEEGLENALKGADVVV   72 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcE-EEch-----h-hcCCcCceEEEecCCCchHHHcCCCCEEE
Confidence            5899999 9999999987642 4445899999875 210 0011     0 11111111111   123567899999999


Q ss_pred             EcCCCC--h-hhhc-cc--c-------HHHHhcCCCCcEEEEcCCCcccCH
Q 020301          242 LHPVLD--K-TTYH-LI--N-------KERLATMKKEAILVNCSRGPVIDE  279 (328)
Q Consensus       242 l~~plt--~-~t~~-li--~-------~~~~~~mk~ga~lIN~aRG~~vde  279 (328)
                      ++.-..  + +++- ++  |       .+.+.+-.|++++|+++  ..+|.
T Consensus        73 itaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs--NPvDv  121 (312)
T TIGR01772        73 IPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT--NPVNS  121 (312)
T ss_pred             EeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec--Cchhh
Confidence            886532  1 1221 11  1       12334446899999995  45664

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=93.59  E-value=0.36  Score=46.55  Aligned_cols=67  Identities=16%  Similarity=0.178  Sum_probs=46.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcC-CcEEEE-EcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~f-g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .+|||||. .+|+.-++.+.+.- ++++.+ +|+..+. .+++.+.|       +.     ..+.++++++...|+++++
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~er-A~~~A~~~-------gi-----~~y~~~eell~d~Di~~V~   69 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSER-SRALAHRL-------GV-----PLYCEVEELPDDIDIACVV   69 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHH-HHHHHHHh-------CC-----CccCCHHHHhcCCCEEEEE
Confidence            57999999 68999988864322 577664 6776543 33333333       21     2358999999999999999


Q ss_pred             CCC
Q 020301          244 PVL  246 (328)
Q Consensus       244 ~pl  246 (328)
                      +|.
T Consensus        70 ipt   72 (343)
T TIGR01761        70 VRS   72 (343)
T ss_pred             eCC
Confidence            984

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.49  E-value=0.29  Score=45.00  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=30.7

Q ss_pred             cCCCEEEEEecC---HHHHHHHHHHHhcCCcEEEEEcCC
Q 020301          163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLY  198 (328)
Q Consensus       163 l~g~tvgIiG~G---~IG~~vA~~l~~~fg~~V~~~d~~  198 (328)
                      +.||++.|.|.+   .||+++|+.|+ .-|++|+..+++
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la-~~G~~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHH-HCCCEEEEEecc
Confidence            679999999997   59999999985 679999988876

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=93.49  E-value=0.35  Score=45.67  Aligned_cols=95  Identities=20%  Similarity=0.163  Sum_probs=57.1

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC---HHHHhh--cC
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLR--EA  237 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~--~a  237 (328)
                      .|.++.|+|.|.+|...++.+ +.+|++ |++.+++....  +....+       |....-.....+   +.++..  ..
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~a-k~~G~~~vi~~~~~~~~~--~~~~~~-------ga~~~i~~~~~~~~~~~~~~~~~~~  232 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLA-RALGAEDVIGVDPSPERL--ELAKAL-------GADFVINSGQDDVQEIRELTSGAGA  232 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH--HHHHHh-------CCCEEEcCCcchHHHHHHHhCCCCC
Confidence            388999999999999999985 899999 99988765432  111222       211110000011   222322  47


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      |+|+-+... +.    .....++.++++..++..+.
T Consensus       233 d~vid~~g~-~~----~~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         233 DVAIECSGN-TA----ARRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             CEEEECCCC-HH----HHHHHHHHhhcCCEEEEEcC
Confidence            888877652 11    12345677778877777654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK08223 hypothetical protein; Validated

Probab=93.48  E-value=0.33  Score=45.61  Aligned_cols=101  Identities=12%  Similarity=0.072  Sum_probs=59.2

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--H-------HH-----HHhhhhhhhhcCC-CCCcc-
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-------EK-----FVTAYGQFLKANG-EQPVT-  223 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~-------~~-----~~~~~~~~~~~~~-~~~~~-  223 (328)
                      ..|..++|.|||+|-+|..+|+.|+ ..|. ++..+|...-+.  +       +.     ..+.-.+.+++-. ...+. 
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA-~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~  101 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLA-RLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRA  101 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHH-HhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEE
Confidence            4699999999999999999999985 5665 677777642110  0       00     0000000011000 00000 


Q ss_pred             ---ccccCCHHHHhhcCCEEEEcCCCC-hhhhccccHHHHhcC
Q 020301          224 ---WKRASSMDEVLREADVISLHPVLD-KTTYHLINKERLATM  262 (328)
Q Consensus       224 ---~~~~~~l~ell~~aDiV~l~~plt-~~t~~li~~~~~~~m  262 (328)
                         .....+.+++++.+|+|+-++..- -+++.++|+...+.=
T Consensus       102 ~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~  144 (287)
T PRK08223        102 FPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRG  144 (287)
T ss_pred             EecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcC
Confidence               012346778899999998776531 278888887766643

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=93.41  E-value=0.15  Score=44.75  Aligned_cols=67  Identities=15%  Similarity=0.289  Sum_probs=45.6

Q ss_pred             EEEEEecCHHHHHHHHH-HHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEEE
Q 020301          167 TVGVIGAGRIGSAYARM-MVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~-l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (328)
                      ++.|||.|++|++++.. ..+..||++. ++|..++.-        |   ..  ..+......++|++.++  +.|+.++
T Consensus        86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~V--------G---~~--~~~v~V~~~d~le~~v~~~dv~iaiL  152 (211)
T COG2344          86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKV--------G---TK--IGDVPVYDLDDLEKFVKKNDVEIAIL  152 (211)
T ss_pred             eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHh--------C---cc--cCCeeeechHHHHHHHHhcCccEEEE
Confidence            58999999999999963 2346789865 677765421        0   01  12233344567888888  6788999


Q ss_pred             cCCC
Q 020301          243 HPVL  246 (328)
Q Consensus       243 ~~pl  246 (328)
                      |+|.
T Consensus       153 tVPa  156 (211)
T COG2344         153 TVPA  156 (211)
T ss_pred             EccH
Confidence            9994

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.39  E-value=0.31  Score=48.38  Aligned_cols=117  Identities=14%  Similarity=0.152  Sum_probs=68.4

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      +.++++.|+|.|.+|.++|+.| ...|.+|.++|.............+     ..|.   ....-..-++.+..+|+|+.
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l-~~~g~~v~~~d~~~~~~~~~~l~~~-----~~gi---~~~~g~~~~~~~~~~d~vv~   73 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYL-RKNGAEVAAYDAELKPERVAQIGKM-----FDGL---VFYTGRLKDALDNGFDILAL   73 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCchhHHHHhhc-----cCCc---EEEeCCCCHHHHhCCCEEEE
Confidence            5689999999999999999997 6889999999976543111100000     0111   11011112345578999976


Q ss_pred             cCCCCh---hhh-------ccccHH-HHhc-CC---CCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          243 HPVLDK---TTY-------HLINKE-RLAT-MK---KEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       243 ~~plt~---~t~-------~li~~~-~~~~-mk---~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      .---.+   .-+       .++.+. .+.. ++   ...+-|--+-|..--..-+...|+.
T Consensus        74 spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~  134 (445)
T PRK04308         74 SPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIK  134 (445)
T ss_pred             CCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence            543222   221       133333 3223 32   2355566677888877788888875

>PRK10206 putative oxidoreductase; Provisional

Probab=93.37  E-value=0.26  Score=47.39  Aligned_cols=68  Identities=15%  Similarity=0.225  Sum_probs=42.5

Q ss_pred             EEEEEecCHHHHH-HHHHHHhc-CCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEE
Q 020301          167 TVGVIGAGRIGSA-YARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (328)
Q Consensus       167 tvgIiG~G~IG~~-vA~~l~~~-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  241 (328)
                      ++||||+|.|++. .+..+... -++++. ++|++....  +..+.|       +.    ...+.+++++++  ..|+|+
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~--~~~~~~-------~~----~~~~~~~~ell~~~~iD~V~   69 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE--EQAPIY-------SH----IHFTSDLDEVLNDPDVKLVV   69 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH--HHHHhc-------CC----CcccCCHHHHhcCCCCCEEE
Confidence            6999999998864 34433222 267876 578875321  222222       11    123578999996  579999


Q ss_pred             EcCCCC
Q 020301          242 LHPVLD  247 (328)
Q Consensus       242 l~~plt  247 (328)
                      ++.|..
T Consensus        70 I~tp~~   75 (344)
T PRK10206         70 VCTHAD   75 (344)
T ss_pred             EeCCch
Confidence            999944

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=93.36  E-value=0.28  Score=51.09  Aligned_cols=94  Identities=20%  Similarity=0.220  Sum_probs=58.6

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH----hhcCCEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI  240 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV  240 (328)
                      ..++-|+|+|++|+.+|+.| +..|.++++.|.+++.. +.        +++.|.. ......++.+-+    +++||.+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v-~~--------~~~~g~~-v~~GDat~~~~L~~agi~~A~~v  468 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLL-LSSGVKMTVLDHDPDHI-ET--------LRKFGMK-VFYGDATRMDLLESAGAAKAEVL  468 (621)
T ss_pred             cCcEEEEecChHHHHHHHHH-HhCCCCEEEEECCHHHH-HH--------HHhcCCe-EEEEeCCCHHHHHhcCCCcCCEE
Confidence            46799999999999999997 68899999999887532 11        1222321 111122333322    5689999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~  271 (328)
                      +++.+..+.+..++  ...+++.|+..++--
T Consensus       469 vv~~~d~~~n~~i~--~~ar~~~p~~~iiaR  497 (621)
T PRK03562        469 INAIDDPQTSLQLV--ELVKEHFPHLQIIAR  497 (621)
T ss_pred             EEEeCCHHHHHHHH--HHHHHhCCCCeEEEE
Confidence            99998555444432  334445566555443

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=93.36  E-value=0.26  Score=53.93  Aligned_cols=107  Identities=9%  Similarity=0.088  Sum_probs=66.6

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHH--h--------hh----hhhhh-cCCCCCccc---
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV--T--------AY----GQFLK-ANGEQPVTW---  224 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~--~--------~~----~~~~~-~~~~~~~~~---  224 (328)
                      +.-.++.|+|.|++|+..++.+ +++|++ . .++..-..+....  .        -|    ..+-. ..+.....+   
T Consensus       201 v~P~~vVi~G~G~Vg~gA~~i~-~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~  277 (1042)
T PLN02819        201 ICPLVFVFTGSGNVSQGAQEIF-KLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKA  277 (1042)
T ss_pred             CCCeEEEEeCCchHHHHHHHHH-hhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchh
Confidence            4457899999999999999996 789888 2 3433221111000  0        00    00000 000000000   


Q ss_pred             -------cccCC-HHHHhhcCCEEEEcCCCChhhhccccHH-HHhcCCCCc----EEEEcC
Q 020301          225 -------KRASS-MDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEA----ILVNCS  272 (328)
Q Consensus       225 -------~~~~~-l~ell~~aDiV~l~~plt~~t~~li~~~-~~~~mk~ga----~lIN~a  272 (328)
                             .+... +++.+..||+|+.|+-..+.+..++.++ ..+.||+|+    ++++++
T Consensus       278 ~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs  338 (1042)
T PLN02819        278 DYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT  338 (1042)
T ss_pred             hhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence                   00111 4578899999999998888889999988 778899998    899876

>PRK06701 short chain dehydrogenase; Provisional

Probab=93.32  E-value=0.27  Score=45.85  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=33.1

Q ss_pred             cccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       161 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ..+.|+++-|.|. |.||..+|+.|+ .-|++|+.+++...
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~-~~G~~V~l~~r~~~   81 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFA-KEGADIAIVYLDEH   81 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcc
Confidence            4688999999995 789999999985 67999999988753

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=93.31  E-value=0.33  Score=46.07  Aligned_cols=119  Identities=17%  Similarity=0.164  Sum_probs=67.1

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      .++.|+|.|.||.-++-+|+ ..|..|+.+-|.+.  .+++.. -+-.................-.+.+..+|+|++++-
T Consensus         1 mkI~IlGaGAvG~l~g~~L~-~~g~~V~~~~R~~~--~~~l~~-~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK   76 (307)
T COG1893           1 MKILILGAGAIGSLLGARLA-KAGHDVTLLVRSRR--LEALKK-KGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK   76 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHH-hCCCeEEEEecHHH--HHHHHh-CCeEEecCCCccccccccccChhhcCCCCEEEEEec
Confidence            37999999999999999985 66778888777654  122111 011111111100001112233455678999999975


Q ss_pred             CChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020301          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (328)
Q Consensus       246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i  291 (328)
                       +.+|...+ +......++.+.++-+--| +=.++.+-+.+.+.++
T Consensus        77 -a~q~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~i  119 (307)
T COG1893          77 -AYQLEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETV  119 (307)
T ss_pred             -cccHHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceE
Confidence             44555544 5555667777766644333 2233455555555533

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=93.26  E-value=0.65  Score=46.37  Aligned_cols=109  Identities=19%  Similarity=0.145  Sum_probs=71.0

Q ss_pred             cCCCEEEEEec----CHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc
Q 020301          163 LKGQTVGVIGA----GRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (328)
Q Consensus       163 l~g~tvgIiG~----G~IG~~vA~~l~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (328)
                      ++-++|.|||.    |++|..+.+.| +..|+  +|+.++|....                 .  .+...+.+++++-..
T Consensus         5 ~~p~siavvGaS~~~~~~g~~~~~~l-~~~gf~g~v~~Vnp~~~~-----------------i--~G~~~~~sl~~lp~~   64 (447)
T TIGR02717         5 FNPKSVAVIGASRDPGKVGYAIMKNL-IEGGYKGKIYPVNPKAGE-----------------I--LGVKAYPSVLEIPDP   64 (447)
T ss_pred             cCCCEEEEEccCCCCCchHHHHHHHH-HhCCCCCcEEEECCCCCc-----------------c--CCccccCCHHHCCCC
Confidence            55678999999    88999999987 56565  78888876431                 0  112335689998888


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCC-CcEEEEcCCCcc-----cCHHHHHHHHHcCCccEE
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKK-EAILVNCSRGPV-----IDEVALVEHLKQNPMFRV  294 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~-ga~lIN~aRG~~-----vde~aL~~aL~~g~i~ga  294 (328)
                      .|++++++| .+.+..++ ++..+ .+- .++++.-+-++.     -.++.|.++.+++.+.-.
T Consensus        65 ~Dlavi~vp-~~~~~~~l-~e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl  125 (447)
T TIGR02717        65 VDLAVIVVP-AKYVPQVV-EECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL  125 (447)
T ss_pred             CCEEEEecC-HHHHHHHH-HHHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence            899999999 23444544 33333 333 444443333332     236788888887766644

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=93.22  E-value=0.36  Score=42.73  Aligned_cols=37  Identities=30%  Similarity=0.413  Sum_probs=31.3

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCC
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~  198 (328)
                      ..|.+++|.|+|+|.+|.++|+.|+ ..|. ++..+|..
T Consensus        15 ~~L~~s~VlviG~gglGsevak~L~-~~GVg~i~lvD~d   52 (198)
T cd01485          15 NKLRSAKVLIIGAGALGAEIAKNLV-LAGIDSITIVDHR   52 (198)
T ss_pred             HHHhhCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEECC
Confidence            4689999999999999999999985 5676 48788765

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=93.20  E-value=0.27  Score=46.35  Aligned_cols=101  Identities=19%  Similarity=0.263  Sum_probs=62.4

Q ss_pred             cCCCEEEEEe---cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          163 LKGQTVGVIG---AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       163 l~g~tvgIiG---~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      +.|++|+|+|   +|+..++.++.| +.||++|..+.|..-...+...+..    +..+   .........+|.+.++|+
T Consensus       156 ~~gl~iaivGDlkhsRva~S~~~~L-~~~ga~v~lvsP~~L~~p~~i~~~l----~~~~---~~~~~~~~~e~~i~~~DV  227 (316)
T COG0540         156 LDGLKIAIVGDLKHSRVAHSNIQAL-KRFGAEVYLVSPETLLPPEYILEEL----EEKG---GVVVEHDSDEEVIEEADV  227 (316)
T ss_pred             cCCcEEEEEccccchHHHHHHHHHH-HHcCCEEEEECchHhCCchhHHHHH----hhcC---ceEEEecchhhhhccCCE
Confidence            8999999999   899999999997 7999999999986432222221111    1111   122234456669999999


Q ss_pred             EEEcC--------CCChh---hhccccHHHHhc-CCCCcEEEEc
Q 020301          240 ISLHP--------VLDKT---TYHLINKERLAT-MKKEAILVNC  271 (328)
Q Consensus       240 V~l~~--------plt~~---t~~li~~~~~~~-mk~ga~lIN~  271 (328)
                      +.+.=        |.-++   -.+-+....+++ +|+++++.--
T Consensus       228 l~~lRvQ~ER~~~~~~~s~~~~y~~~~~~~~~~~~k~~~ivmHP  271 (316)
T COG0540         228 LYMLRVQKERFNDPEEYSKVKEYYKLYGLTLERLAKPDAIVMHP  271 (316)
T ss_pred             EEeehhhHhhcCCccchHHHHHHHHHHHHHHHhhcCCCcEEECC
Confidence            96531        11111   111223344555 7777777654

>PRK15076 alpha-galactosidase; Provisional

Probab=93.17  E-value=0.35  Score=48.05  Aligned_cols=125  Identities=14%  Similarity=0.134  Sum_probs=70.7

Q ss_pred             CEEEEEecCHHHHHHHH--HHH--hcC-CcEEEEEcCCchhHH--HHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          166 QTVGVIGAGRIGSAYAR--MMV--EGF-KMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~--~l~--~~f-g~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      .+|+|||.|++|...+-  .++  .++ +.+|..||.......  ......   .....+ .........++.+.++.||
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~---~~~~~~-~~~~i~~ttD~~eal~dAD   77 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARK---LAESLG-ASAKITATTDRREALQGAD   77 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHH---HHHhcC-CCeEEEEECCHHHHhCCCC
Confidence            47999999999955443  221  344 459999999864321  111111   111111 1223333468889999999


Q ss_pred             EEEEcCCCC--h--------------------hhh-------cccc-------HHHHhcCCCCcEEEEcCCCcccCHHHH
Q 020301          239 VISLHPVLD--K--------------------TTY-------HLIN-------KERLATMKKEAILVNCSRGPVIDEVAL  282 (328)
Q Consensus       239 iV~l~~plt--~--------------------~t~-------~li~-------~~~~~~mk~ga~lIN~aRG~~vde~aL  282 (328)
                      ||+.++-..  +                    +|.       .+-+       .+.++...|++++||.+-.-=+-..++
T Consensus        78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~  157 (431)
T PRK15076         78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAM  157 (431)
T ss_pred             EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Confidence            998876542  1                    110       0001       123334458999999988765555555


Q ss_pred             HHHHHcCCccEEE
Q 020301          283 VEHLKQNPMFRVG  295 (328)
Q Consensus       283 ~~aL~~g~i~gaa  295 (328)
                      .+ +...++.|.+
T Consensus       158 ~~-~~~~rviG~c  169 (431)
T PRK15076        158 NR-YPGIKTVGLC  169 (431)
T ss_pred             hc-CCCCCEEEEC
Confidence            52 2344555553

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=93.15  E-value=1.7  Score=42.78  Aligned_cols=106  Identities=20%  Similarity=0.304  Sum_probs=64.8

Q ss_pred             ccCCCEEEEEec-----C---HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH
Q 020301          162 LLKGQTVGVIGA-----G---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (328)
Q Consensus       162 ~l~g~tvgIiG~-----G---~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (328)
                      .+.|++|+|+|-     |   ++.++++..+ ..||++|.+..|..-...++..+.--+.++..|   .......++++.
T Consensus       184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~-~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G---~~i~~~~d~~ea  259 (395)
T PRK07200        184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASG---GSFRQVNSMEEA  259 (395)
T ss_pred             ccCCCEEEEEeccccccCCcchHHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence            478999999985     5   5668888886 589999999988631111111110000011112   112234799999


Q ss_pred             hhcCCEEEEcC----C--C--------Ch-----------------hhhccccHHHHhcCCCC-cEEEEc
Q 020301          234 LREADVISLHP----V--L--------DK-----------------TTYHLINKERLATMKKE-AILVNC  271 (328)
Q Consensus       234 l~~aDiV~l~~----p--l--------t~-----------------~t~~li~~~~~~~mk~g-a~lIN~  271 (328)
                      +++||+|..-.    .  .        ..                 -..--+|++.++.+|++ +++.-+
T Consensus       260 v~~aDvVYtd~W~sm~~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~elm~~a~~~~ai~MHc  329 (395)
T PRK07200        260 FKDADIVYPKSWAPYKVMEERTELYRAGDHEGIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMHC  329 (395)
T ss_pred             hCCCCEEEEcCeeecccccccccccccccchhhhhhhhhhhHHHHHccCCCcCHHHHhccCCCCcEEECC
Confidence            99999997642    1  0        00                 01123678888888885 888776

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=93.12  E-value=0.42  Score=46.06  Aligned_cols=95  Identities=14%  Similarity=0.106  Sum_probs=56.6

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHH-HH---hh-cC
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD-EV---LR-EA  237 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-el---l~-~a  237 (328)
                      .|.+|.|.|.|.+|...++. ++..|+ +|++.++++...  +....+       |....-.....++. ++   .. ..
T Consensus       191 ~g~~VlV~G~G~vG~~a~~l-ak~~G~~~Vi~~~~~~~r~--~~a~~~-------Ga~~~i~~~~~~~~~~i~~~~~~g~  260 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLG-AVAAGASQVVAVDLNEDKL--ALAREL-------GATATVNAGDPNAVEQVRELTGGGV  260 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCcEEEEcCCHHHH--HHHHHc-------CCceEeCCCchhHHHHHHHHhCCCC
Confidence            47899999999999999998 489999 699888776432  111222       22111000111221 22   11 37


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      |+|+-++.. +++    -...++.++++..++.++-
T Consensus       261 d~vid~~G~-~~~----~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         261 DYAFEMAGS-VPA----LETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             CEEEECCCC-hHH----HHHHHHHHhcCCEEEEEcc
Confidence            898877652 221    2345667788888887653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=93.11  E-value=0.59  Score=46.39  Aligned_cols=96  Identities=14%  Similarity=0.176  Sum_probs=61.7

Q ss_pred             ccccCCCEEEEEec----------CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC
Q 020301          160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (328)
Q Consensus       160 ~~~l~g~tvgIiG~----------G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (328)
                      +..+.|++|+|+|+          .+-+..+++.| ..-|.+|.+|||........  ..+       +        ...
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L-~~~g~~V~~~DP~v~~~~~~--~~~-------~--------~~~  370 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKEL-GKYSCKVDIFDPWVDAEEVR--REY-------G--------IIP  370 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHH-HhCCCEEEEECCCCChhHHH--Hhc-------C--------ccc
Confidence            34689999999999          46678899997 57899999999984321100  000       0        011


Q ss_pred             HHH-HhhcCCEEEEcCCCChhhhccccHHHHh-cCCCCcEEEEcCCCcc
Q 020301          230 MDE-VLREADVISLHPVLDKTTYHLINKERLA-TMKKEAILVNCSRGPV  276 (328)
Q Consensus       230 l~e-ll~~aDiV~l~~plt~~t~~li~~~~~~-~mk~ga~lIN~aRG~~  276 (328)
                      +++ .++.||.|+++.. -++.+. ++-+.+. .||...++|+. |+-+
T Consensus       371 ~~~~~~~~ad~vvi~t~-h~~f~~-~~~~~~~~~~~~~~~iiD~-r~~~  416 (425)
T PRK15182        371 VSEVKSSHYDAIIVAVG-HQQFKQ-MGSEDIRGFGKDKHVLYDL-KYVL  416 (425)
T ss_pred             chhhhhcCCCEEEEccC-CHHhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence            222 3678999999977 344444 4544444 45545688884 6544

>PRK07411 hypothetical protein; Validated

Probab=93.04  E-value=0.29  Score=47.98  Aligned_cols=102  Identities=19%  Similarity=0.157  Sum_probs=62.0

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--H-------HHHH-----hhhhhhhhcCC-CCCccc
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-------EKFV-----TAYGQFLKANG-EQPVTW  224 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~-------~~~~-----~~~~~~~~~~~-~~~~~~  224 (328)
                      ..|..++|.|||+|.+|..+|+.|+ ..|. ++..+|...-..  +       +..+     +...+.+++-. ......
T Consensus        34 ~~L~~~~VlivG~GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~  112 (390)
T PRK07411         34 KRLKAASVLCIGTGGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDL  112 (390)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEE
Confidence            4699999999999999999999985 6665 677888653210  0       0000     00000011000 000000


Q ss_pred             --c--ccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCC
Q 020301          225 --K--RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK  264 (328)
Q Consensus       225 --~--~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~  264 (328)
                        .  ...+..++++++|+|+.|.- +.+++.++|+...+.-+|
T Consensus       113 ~~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p  155 (390)
T PRK07411        113 YETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNKP  155 (390)
T ss_pred             EecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence              0  11234678999999888765 678899999888776665

>PRK06349 homoserine dehydrogenase; Provisional

Probab=92.99  E-value=0.61  Score=46.27  Aligned_cols=108  Identities=14%  Similarity=0.172  Sum_probs=59.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHh---------cCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh
Q 020301          166 QTVGVIGAGRIGSAYARMMVE---------GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~---------~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (328)
                      -+|||+|+|.||+.+++.+.+         +.+.+|. ++|++.... .             +..........++++++.
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~-~-------------~~~~~~~~~~~d~~~ll~   69 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD-R-------------GVDLPGILLTTDPEELVN   69 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc-c-------------CCCCcccceeCCHHHHhh
Confidence            379999999999999887532         1245654 457654321 0             000011122468999996


Q ss_pred             --cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCc
Q 020301          236 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM  291 (328)
Q Consensus       236 --~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~v-de~aL~~aL~~g~i  291 (328)
                        +.|+|+.+++...-.+    +-..+.++.|.-+|-..-+.+. .-+.|.++.++...
T Consensus        70 d~~iDvVve~tg~~~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv  124 (426)
T PRK06349         70 DPDIDIVVELMGGIEPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV  124 (426)
T ss_pred             CCCCCEEEECCCCchHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence              4699999887432111    1222445556555543222222 23566666666544

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=92.98  E-value=0.15  Score=40.76  Aligned_cols=87  Identities=11%  Similarity=0.196  Sum_probs=51.2

Q ss_pred             ecCHHHHHHHHHHHhc---CCcEEEE-EcCC--chhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEEEc
Q 020301          172 GAGRIGSAYARMMVEG---FKMNLIY-YDLY--QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH  243 (328)
Q Consensus       172 G~G~IG~~vA~~l~~~---fg~~V~~-~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~  243 (328)
                      |+|.||+.+++.+.+.   ++++|.+ ++++  .........              .......++++++.  ..|+|+=|
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~dvvVE~   66 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASF--------------PDEAFTTDLEELIDDPDIDVVVEC   66 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHH--------------THSCEESSHHHHHTHTT-SEEEE-
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhc--------------ccccccCCHHHHhcCcCCCEEEEC
Confidence            8999999999997432   2777664 4665  111111000              01123468999999  99999988


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCCCccc
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~v  277 (328)
                      .+. +..    .+-....++.|.-+|-.+-|.+.
T Consensus        67 t~~-~~~----~~~~~~~L~~G~~VVt~nk~ala   95 (117)
T PF03447_consen   67 TSS-EAV----AEYYEKALERGKHVVTANKGALA   95 (117)
T ss_dssp             SSC-HHH----HHHHHHHHHTTCEEEES-HHHHH
T ss_pred             CCc-hHH----HHHHHHHHHCCCeEEEECHHHhh
Confidence            553 222    23344556788889988888888

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=92.96  E-value=0.15  Score=43.56  Aligned_cols=70  Identities=17%  Similarity=0.151  Sum_probs=47.9

Q ss_pred             EEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCc--cccccCCHHHHhhcCCEEEEcC
Q 020301          168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       168 vgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      |.|+|. |.+|+.+++.| ..-|.+|++..|++.+..+           ..+....  .+....++.+.++.+|.|+.++
T Consensus         1 I~V~GatG~vG~~l~~~L-~~~~~~V~~~~R~~~~~~~-----------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~   68 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQL-LRRGHEVTALVRSPSKAED-----------SPGVEIIQGDLFDPDSVKAALKGADAVIHAA   68 (183)
T ss_dssp             EEEETTTSHHHHHHHHHH-HHTTSEEEEEESSGGGHHH-----------CTTEEEEESCTTCHHHHHHHHTTSSEEEECC
T ss_pred             eEEECCCChHHHHHHHHH-HHCCCEEEEEecCchhccc-----------ccccccceeeehhhhhhhhhhhhcchhhhhh
Confidence            578995 99999999997 5788999999998764321           0111111  1111234577889999999999


Q ss_pred             CCChh
Q 020301          245 VLDKT  249 (328)
Q Consensus       245 plt~~  249 (328)
                      +.+..
T Consensus        69 ~~~~~   73 (183)
T PF13460_consen   69 GPPPK   73 (183)
T ss_dssp             HSTTT
T ss_pred             hhhcc
Confidence            85444

...

>PLN00106 malate dehydrogenase

Probab=92.89  E-value=0.32  Score=46.52  Aligned_cols=104  Identities=23%  Similarity=0.256  Sum_probs=59.8

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCC-Cccc-cccCCHHHHhhcCCE
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTW-KRASSMDEVLREADV  239 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~ell~~aDi  239 (328)
                      ..++|+|+|. |++|..+|..|+. .+.-++..+|+.. ...+ ..+     +.+.... .... ...+++.+.++.||+
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~-a~D-----l~~~~~~~~i~~~~~~~d~~~~l~~aDi   89 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGV-AAD-----VSHINTPAQVRGFLGDDQLGDALKGADL   89 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCee-Ech-----hhhCCcCceEEEEeCCCCHHHHcCCCCE
Confidence            4469999999 9999999998642 3444899999876 2110 001     0000000 1111 123456788999999


Q ss_pred             EEEcCCC--Ch-hhhc-cc--c----HH---HHhcCCCCcEEEEcCCC
Q 020301          240 ISLHPVL--DK-TTYH-LI--N----KE---RLATMKKEAILVNCSRG  274 (328)
Q Consensus       240 V~l~~pl--t~-~t~~-li--~----~~---~~~~mk~ga~lIN~aRG  274 (328)
                      |+++.-.  .| +++. ++  |    .+   .+....|++++++++--
T Consensus        90 VVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNP  137 (323)
T PLN00106         90 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNP  137 (323)
T ss_pred             EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            9887543  21 1221 11  1    22   23334589999999654

>PRK06128 oxidoreductase; Provisional

Probab=92.77  E-value=0.4  Score=44.76  Aligned_cols=36  Identities=25%  Similarity=0.226  Sum_probs=30.3

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCC
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~  198 (328)
                      .+.||++.|.|. |.||+.+|+.|+ .-|++|+...+.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~-~~G~~V~i~~~~   88 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFA-REGADIALNYLP   88 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHH-HcCCEEEEEeCC
Confidence            478999999996 889999999985 679999876554

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=92.68  E-value=0.55  Score=45.20  Aligned_cols=36  Identities=19%  Similarity=0.421  Sum_probs=31.1

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .|++|.|.|.|.+|...++. ++.+|++|++.+.+..
T Consensus       183 ~g~~VlV~G~G~vG~~avq~-Ak~~Ga~vi~~~~~~~  218 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKI-GKAFGLKVTVISSSSN  218 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHCCCEEEEEeCCcc
Confidence            58899999999999999998 4899999988876653

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=92.64  E-value=0.23  Score=36.87  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=29.5

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ++.|||.|.+|-++|..| +.+|.+|..+++.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l-~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEAL-AELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHH-HHTTSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHH-HHhCcEEEEEeccch
Confidence            588999999999999997 689999999988754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>cd08293 PTGR2 Prostaglandin reductase

Probab=92.63  E-value=0.65  Score=43.87  Aligned_cols=93  Identities=16%  Similarity=0.135  Sum_probs=58.3

Q ss_pred             CCEEEEEec-CHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-----hcC
Q 020301          165 GQTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA  237 (328)
Q Consensus       165 g~tvgIiG~-G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~~a  237 (328)
                      |.++.|.|. |.+|+..++. ++.+|+ +|++.+++....  ++...      ..|....-.....++.+.+     ...
T Consensus       155 ~~~VlI~ga~g~vG~~aiql-Ak~~G~~~Vi~~~~s~~~~--~~~~~------~lGa~~vi~~~~~~~~~~i~~~~~~gv  225 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQI-GRLLGCSRVVGICGSDEKC--QLLKS------ELGFDAAINYKTDNVAERLRELCPEGV  225 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHH-HHHcCCCEEEEEcCCHHHH--HHHHH------hcCCcEEEECCCCCHHHHHHHHCCCCc
Confidence            489999998 9999999998 489999 799988765432  11110      0122111111112333322     247


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      |+++-++.. +   . + .+.++.++++..+|..+
T Consensus       226 d~vid~~g~-~---~-~-~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         226 DVYFDNVGG-E---I-S-DTVISQMNENSHIILCG  254 (345)
T ss_pred             eEEEECCCc-H---H-H-HHHHHHhccCCEEEEEe
Confidence            899877662 1   1 2 56788899999888875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=92.62  E-value=0.59  Score=44.72  Aligned_cols=95  Identities=18%  Similarity=0.159  Sum_probs=57.4

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH----HHHhh--c
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVLR--E  236 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ell~--~  236 (328)
                      .|+++.|.|.|.+|...++. ++.+|++ |++.+++....  ++..       +.|....-.....+.    .++..  .
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~-ak~~G~~~Vi~~~~~~~~~--~~~~-------~~Ga~~~i~~~~~~~~~~i~~~~~~~g  245 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAG-AALAGASKIIAVDIDDRKL--EWAR-------EFGATHTVNSSGTDPVEAIRALTGGFG  245 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHHH--HHHH-------HcCCceEEcCCCcCHHHHHHHHhCCCC
Confidence            47899999999999999998 4899985 98888775432  1111       122211100011122    22222  4


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .|+|+-++.. +++   + ...+..++++..+|.++-
T Consensus       246 ~d~vid~~g~-~~~---~-~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       246 ADVVIDAVGR-PET---Y-KQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             CCEEEECCCC-HHH---H-HHHHHHhccCCEEEEECC
Confidence            7888877652 222   2 345677888888888764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK07877 hypothetical protein; Provisional

Probab=92.53  E-value=0.36  Score=50.96  Aligned_cols=100  Identities=18%  Similarity=0.174  Sum_probs=61.1

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhH--HHH-----------HHhhhhhhhhc-CCCCCccc
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATR--LEK-----------FVTAYGQFLKA-NGEQPVTW  224 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~--~V~~~d~~~~~~--~~~-----------~~~~~~~~~~~-~~~~~~~~  224 (328)
                      ..|.+++|+|+|+| +|..+|..|+ ..|.  ++..+|...-+.  +..           ..+...+.+.+ .....+..
T Consensus       103 ~~L~~~~V~IvG~G-lGs~~a~~La-raGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~  180 (722)
T PRK07877        103 ERLGRLRIGVVGLS-VGHAIAHTLA-AEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV  180 (722)
T ss_pred             HHHhcCCEEEEEec-HHHHHHHHHH-HccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence            45999999999999 9999999985 5563  777777542110  000           00000000000 00000100


Q ss_pred             ----cccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCC
Q 020301          225 ----KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (328)
Q Consensus       225 ----~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk  263 (328)
                          ....+++++++.+|+|+-|+- +-+++.++|+...++-+
T Consensus       181 ~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~i  222 (722)
T PRK07877        181 FTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARRI  222 (722)
T ss_pred             EeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence                012368889999999999987 67999999988877533

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=92.52  E-value=0.38  Score=43.82  Aligned_cols=35  Identities=23%  Similarity=0.112  Sum_probs=29.3

Q ss_pred             ccCCCEEEEEec---CHHHHHHHHHHHhcCCcEEEEEcC
Q 020301          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDL  197 (328)
Q Consensus       162 ~l~g~tvgIiG~---G~IG~~vA~~l~~~fg~~V~~~d~  197 (328)
                      ++.||++-|.|.   +.||+++|+.|+ .-|++|+...+
T Consensus         3 ~l~~k~~lItGas~~~GIG~aia~~la-~~G~~v~~~~~   40 (258)
T PRK07370          3 DLTGKKALVTGIANNRSIAWGIAQQLH-AAGAELGITYL   40 (258)
T ss_pred             ccCCcEEEEeCCCCCCchHHHHHHHHH-HCCCEEEEEec
Confidence            467999999997   489999999985 78999877654

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=92.46  E-value=0.71  Score=42.58  Aligned_cols=93  Identities=18%  Similarity=0.210  Sum_probs=57.3

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHH----HHh--hc
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD----EVL--RE  236 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----ell--~~  236 (328)
                      .|+++.|+|.|.+|...++.+ +.+|++ |++.+++....  +....+       |.... . ...+..    ++.  ..
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~a-k~~G~~~Vi~~~~~~~r~--~~a~~~-------Ga~~~-i-~~~~~~~~~~~~~~~~g  187 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAA-AAAGAARVVAADPSPDRR--ELALSF-------GATAL-A-EPEVLAERQGGLQNGRG  187 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH--HHHHHc-------CCcEe-c-CchhhHHHHHHHhCCCC
Confidence            688999999999999999984 899997 88887765432  111212       22111 0 001111    121  24


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .|+++-+.....     .-...++.++++..++.++-
T Consensus       188 ~d~vid~~G~~~-----~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       188 VDVALEFSGATA-----AVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             CCEEEECCCChH-----HHHHHHHHhcCCCEEEEecc
Confidence            799887765211     12345778889999988873

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=92.38  E-value=0.34  Score=43.31  Aligned_cols=72  Identities=18%  Similarity=0.203  Sum_probs=48.3

Q ss_pred             EEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcc--ccccCCHHHHhhcCCEEEEcC
Q 020301          168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       168 vgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~aDiV~l~~  244 (328)
                      |.|+|. |.+|+.+++.|. .-+.+|.+.-|.........       ++..|..-+.  +....+|.+.++.+|.|++++
T Consensus         1 I~V~GatG~~G~~v~~~L~-~~~~~V~~l~R~~~~~~~~~-------l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~   72 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALL-SAGFSVRALVRDPSSDRAQQ-------LQALGAEVVEADYDDPESLVAALKGVDAVFSVT   72 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHH-HTTGCEEEEESSSHHHHHHH-------HHHTTTEEEES-TT-HHHHHHHHTTCSEEEEES
T ss_pred             CEEECCccHHHHHHHHHHH-hCCCCcEEEEeccchhhhhh-------hhcccceEeecccCCHHHHHHHHcCCceEEeec
Confidence            578886 999999999985 57899998888764322211       1222322111  112346778899999999999


Q ss_pred             CCC
Q 020301          245 VLD  247 (328)
Q Consensus       245 plt  247 (328)
                      |..
T Consensus        73 ~~~   75 (233)
T PF05368_consen   73 PPS   75 (233)
T ss_dssp             SCS
T ss_pred             Ccc
Confidence            954

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=92.33  E-value=0.15  Score=41.90  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=28.2

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~  199 (328)
                      .+++.|+|+|.+|.++|+.|+ ..|+ ++..+|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~-~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLA-RSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHH-HHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HhCCCceeecCCcc
Confidence            578999999999999999985 5677 788898754

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=92.30  E-value=0.55  Score=44.55  Aligned_cols=77  Identities=17%  Similarity=0.141  Sum_probs=50.4

Q ss_pred             EEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       167 tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      +|+|+|. |-.|.++.++|+.--.+++.........                        ...+.+++++++|++++++|
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~------------------------~~~~~~~~~~~~D~vFlalp   58 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK------------------------DAAERAKLLNAADVAILCLP   58 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc------------------------CcCCHhHhhcCCCEEEECCC
Confidence            6899985 8999999999864456676655322110                        11355678889999999999


Q ss_pred             CChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          246 LDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       246 lt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .. .+..+. ...   .+.|..+|+.|
T Consensus        59 ~~-~s~~~~-~~~---~~~g~~VIDlS   80 (310)
T TIGR01851        59 DD-AAREAV-SLV---DNPNTCIIDAS   80 (310)
T ss_pred             HH-HHHHHH-HHH---HhCCCEEEECC
Confidence            33 333322 111   24688888887

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.27  E-value=0.2  Score=49.89  Aligned_cols=112  Identities=21%  Similarity=0.196  Sum_probs=68.6

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      ++.|+++.|+|+|.+|.++|+.| ...|.+|.++|....... .        ++..|..   .... +. +-+..+|+|+
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l-~~~G~~v~~~D~~~~~~~-~--------l~~~g~~---~~~~-~~-~~~~~~d~vv   70 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARAL-VAGGAEVIAWDDNPASRA-K--------AAAAGIT---TADL-RT-ADWSGFAALV   70 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEECCChhhHH-H--------HHhcCcc---ccCC-Ch-hHHcCCCEEE
Confidence            46789999999999999999987 689999999997643221 1        1112221   1011 11 2356799887


Q ss_pred             Ec--CCCC-h----h---hhc----cccHHH-Hhc-C-----CCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          242 LH--PVLD-K----T---TYH----LINKER-LAT-M-----KKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       242 l~--~plt-~----~---t~~----li~~~~-~~~-m-----k~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      ..  +|.+ +    .   ++.    ++.+-. +.+ +     +...+-|.-+.|..--.+-|...|+.
T Consensus        71 ~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~  138 (460)
T PRK01390         71 LSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE  138 (460)
T ss_pred             ECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence            53  2321 1    1   111    133222 222 2     33456667788998888888888876

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=92.24  E-value=0.66  Score=43.87  Aligned_cols=95  Identities=16%  Similarity=0.207  Sum_probs=57.9

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC-HHHHhhcCCEEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~aDiV~l  242 (328)
                      .|.++.|.|.|.+|+.+++.+ +.+|++|++.+++.+..  ++...+       +....-.....+ .++.-...|+++-
T Consensus       169 ~g~~vlV~g~g~vG~~~~~~a-~~~G~~v~~~~~~~~~~--~~~~~~-------g~~~vi~~~~~~~~~~~~~~~d~v~~  238 (337)
T cd05283         169 PGKRVGVVGIGGLGHLAVKFA-KALGAEVTAFSRSPSKK--EDALKL-------GADEFIATKDPEAMKKAAGSLDLIID  238 (337)
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHcCCeEEEEcCCHHHH--HHHHHc-------CCcEEecCcchhhhhhccCCceEEEE
Confidence            467899999999999999985 79999999998875432  111112       111110000001 1223356789988


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      +.+..     ..-...++.++++..+++++.
T Consensus       239 ~~g~~-----~~~~~~~~~l~~~G~~v~~g~  264 (337)
T cd05283         239 TVSAS-----HDLDPYLSLLKPGGTLVLVGA  264 (337)
T ss_pred             CCCCc-----chHHHHHHHhcCCCEEEEEec
Confidence            87732     112555677777777777653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PRK12742 oxidoreductase; Provisional

Probab=92.24  E-value=0.93  Score=40.17  Aligned_cols=36  Identities=25%  Similarity=0.248  Sum_probs=30.2

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCC
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~  198 (328)
                      .+.||++.|.|. |.||+.+|+.| ...|++|+...+.
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l-~~~G~~v~~~~~~   39 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRF-VTDGANVRFTYAG   39 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCC
Confidence            367899999996 89999999997 4789999876553

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=92.24  E-value=0.48  Score=44.46  Aligned_cols=87  Identities=11%  Similarity=0.042  Sum_probs=51.9

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      .|+++.|+|.|.||...++.+ +.+|++ |.+.|+.... .+.        +....     .  ...-++.-...|+|+-
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~a-k~~G~~~v~~~~~~~~r-l~~--------a~~~~-----~--i~~~~~~~~g~Dvvid  206 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLT-KAAGGSPPAVWETNPRR-RDG--------ATGYE-----V--LDPEKDPRRDYRAIYD  206 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHH-HHcCCceEEEeCCCHHH-HHh--------hhhcc-----c--cChhhccCCCCCEEEE
Confidence            467899999999999999984 899998 5556665432 111        00000     0  0011111235788887


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      +... +.+    -...++.++++..++.++
T Consensus       207 ~~G~-~~~----~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       207 ASGD-PSL----IDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             CCCC-HHH----HHHHHHhhhcCcEEEEEe
Confidence            7652 111    145577788888888765

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=92.22  E-value=0.75  Score=43.86  Aligned_cols=37  Identities=27%  Similarity=0.417  Sum_probs=32.1

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .|.++.|.|.|.+|..+++.+ +.+|.+|++.++++..
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a-~~~G~~vi~~~~~~~~  202 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTA-KAMGAAVVAIDIDPEK  202 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHH
Confidence            478999999999999999984 7899999999887643

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=92.20  E-value=0.49  Score=45.01  Aligned_cols=77  Identities=22%  Similarity=0.239  Sum_probs=48.7

Q ss_pred             CEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      .+|+||| -|-.|+++.+.|..-=.+++.....+...                   .     ..+.+++++++|++++++
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-------------------~-----~~~~~~~~~~~DvvFlal   58 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-------------------D-----AAARRELLNAADVAILCL   58 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-------------------c-----ccCchhhhcCCCEEEECC
Confidence            4799999 79999999999753334565554322111                   0     023356678899999999


Q ss_pred             CCChhhhccccHHHHhcC-CCCcEEEEcC
Q 020301          245 VLDKTTYHLINKERLATM-KKEAILVNCS  272 (328)
Q Consensus       245 plt~~t~~li~~~~~~~m-k~ga~lIN~a  272 (328)
                      |.. ..     .+...+. +.|..+|+.|
T Consensus        59 p~~-~s-----~~~~~~~~~~g~~VIDlS   81 (313)
T PRK11863         59 PDD-AA-----REAVALIDNPATRVIDAS   81 (313)
T ss_pred             CHH-HH-----HHHHHHHHhCCCEEEECC
Confidence            932 22     2222222 4688888887

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=92.19  E-value=0.47  Score=45.30  Aligned_cols=111  Identities=17%  Similarity=0.176  Sum_probs=66.7

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHh------cCCcEEEEE--cCCchhHHHHHHhhhhhh---h--hcCCCCCccccccCC
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVE------GFKMNLIYY--DLYQATRLEKFVTAYGQF---L--KANGEQPVTWKRASS  229 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~------~fg~~V~~~--d~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~  229 (328)
                      ..-++|+|||.|+=|+.+|+.++.      .|..+|..|  +-....+.+..-+.....   .  ...-..|.......+
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d   98 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD   98 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence            445789999999999999998642      344444444  322111100100000000   0  000112333445678


Q ss_pred             HHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       230 l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      +.+.+..||+++..+|  .+...=|-++.....|+++..|...-|=
T Consensus        99 l~ea~~dADilvf~vP--hQf~~~ic~~l~g~vk~~~~aISL~KG~  142 (372)
T KOG2711|consen   99 LVEAAKDADILVFVVP--HQFIPRICEQLKGYVKPGATAISLIKGV  142 (372)
T ss_pred             HHHHhccCCEEEEeCC--hhhHHHHHHHHhcccCCCCeEEEeecce
Confidence            9999999999999999  3333324477788899999999887763

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=92.16  E-value=0.9  Score=42.87  Aligned_cols=94  Identities=14%  Similarity=0.121  Sum_probs=55.1

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh---hcCCEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVI  240 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiV  240 (328)
                      .|+++.|.|.|.+|+.+++.+ +.+|++|++.+++.+..  ++...+       |....-.....++.+.+   ...|++
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~a-~~~G~~vi~~~~~~~~~--~~~~~~-------g~~~~i~~~~~~~~~~~~~~~~~d~v  232 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQYA-AKMGFRTVAISRGSDKA--DLARKL-------GAHHYIDTSKEDVAEALQELGGAKLI  232 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCChHHH--HHHHHc-------CCcEEecCCCccHHHHHHhcCCCCEE
Confidence            478999999999999999984 89999999998865431  122222       21111000111222222   346888


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      +-+.....     .-...++.++++..+++.+
T Consensus       233 i~~~g~~~-----~~~~~~~~l~~~G~~v~~g  259 (333)
T cd08296         233 LATAPNAK-----AISALVGGLAPRGKLLILG  259 (333)
T ss_pred             EECCCchH-----HHHHHHHHcccCCEEEEEe
Confidence            76643111     2234566677777777664

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=92.14  E-value=0.61  Score=43.45  Aligned_cols=105  Identities=13%  Similarity=0.186  Sum_probs=61.5

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      ++++.|+|.|-.+++++..| ...|+ +|++++|+.++. ++..+.+       +   ..+  ...+.  ...+|+|+.+
T Consensus       122 ~~~vlilGaGGaarAi~~aL-~~~g~~~i~i~nR~~~~a-~~la~~~-------~---~~~--~~~~~--~~~~dlvINa  185 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAAL-RDAGFTDGTIVARNEKTG-KALAELY-------G---YEW--RPDLG--GIEADILVNV  185 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHh-------C---Ccc--hhhcc--cccCCEEEEC
Confidence            46899999999999999987 57787 599999987532 2222111       0   000  00111  2458999999


Q ss_pred             CCCChhh-----hccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          244 PVLDKTT-----YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       244 ~plt~~t-----~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      .|..-..     .-.++.   +.++++.+++++.=.+ .++.-|.+|-+.|
T Consensus       186 Tp~Gm~~~~~~~~~pi~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G  232 (272)
T PRK12550        186 TPIGMAGGPEADKLAFPE---AEIDAASVVFDVVALP-AETPLIRYARARG  232 (272)
T ss_pred             CccccCCCCccccCCCCH---HHcCCCCEEEEeecCC-ccCHHHHHHHHCc
Confidence            9853211     012333   3356677777775443 3444444444444

>PRK09189 uroporphyrinogen-III synthase; Validated

Probab=92.07  E-value=1.9  Score=38.89  Aligned_cols=55  Identities=15%  Similarity=0.189  Sum_probs=33.3

Q ss_pred             eEEEEeCCCCch-HHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecC
Q 020301           16 YRVVSTKPMPGT-RWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL   70 (328)
Q Consensus        16 ~~vlv~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~   70 (328)
                      |+||+|++-+.. .+.+.|++.|+++...+.-+.....++....+...+|.++..+
T Consensus         1 m~VLvTRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS   56 (240)
T PRK09189          1 MRVLVTRPEPAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTS   56 (240)
T ss_pred             CeEEEECCCCchHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEEC
Confidence            689999998764 3457899999888665432221112333333333468777654

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=92.00  E-value=0.39  Score=40.63  Aligned_cols=31  Identities=35%  Similarity=0.583  Sum_probs=25.0

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEE-EcC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDL  197 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~-~d~  197 (328)
                      ++||+|+|+||+.+++.+.+.-++++.+ +|+
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~   33 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL   33 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            6999999999999999864456788776 454

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PTZ00325 malate dehydrogenase; Provisional

Probab=91.99  E-value=0.46  Score=45.38  Aligned_cols=106  Identities=24%  Similarity=0.275  Sum_probs=59.5

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcccccc---CCHHHHhhc
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLRE  236 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~  236 (328)
                      -+..++|+|+|. |+||+.+|..++ ++..-++..+|+.. ...+ ..+     +.+... .......   .+..+.++.
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~-~~g~-a~D-----l~~~~~-~~~v~~~td~~~~~~~l~g   76 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVG-APGV-AAD-----LSHIDT-PAKVTGYADGELWEKALRG   76 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCC-Cccc-ccc-----hhhcCc-CceEEEecCCCchHHHhCC
Confidence            467789999999 999999999863 14556899999832 1110 001     000010 1111111   122678999


Q ss_pred             CCEEEEcCCCChh---hh-cccc------HHHHhcC---CCCcEEEEcCCCc
Q 020301          237 ADVISLHPVLDKT---TY-HLIN------KERLATM---KKEAILVNCSRGP  275 (328)
Q Consensus       237 aDiV~l~~plt~~---t~-~li~------~~~~~~m---k~ga~lIN~aRG~  275 (328)
                      ||+|++++-....   |+ .++.      ++.++.|   .+.++++.++-+-
T Consensus        77 aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv  128 (321)
T PTZ00325         77 ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV  128 (321)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence            9999887653211   11 2221      2333333   5677888886543

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=91.88  E-value=0.88  Score=42.72  Aligned_cols=94  Identities=18%  Similarity=0.174  Sum_probs=59.0

Q ss_pred             CCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc-cCCHHHHhh-----c
Q 020301          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLR-----E  236 (328)
Q Consensus       164 ~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~-----~  236 (328)
                      .|.++.|.| -|.+|+.+++.+ +.+|++|++.+++.+..  ++...+       |....-... ..++.+.+.     .
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlA-k~~G~~Vi~~~~s~~~~--~~~~~l-------Ga~~vi~~~~~~~~~~~~~~~~~~g  207 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIA-KLKGCKVVGAAGSDEKV--AYLKKL-------GFDVAFNYKTVKSLEETLKKASPDG  207 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCHHHH--HHHHHc-------CCCEEEeccccccHHHHHHHhCCCC
Confidence            478999999 599999999984 89999999888765431  111222       221111001 113333322     3


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .|+++-++. .+    .+ ...++.++++..+|+.+.
T Consensus       208 vdvv~d~~G-~~----~~-~~~~~~l~~~G~iv~~G~  238 (325)
T TIGR02825       208 YDCYFDNVG-GE----FS-NTVIGQMKKFGRIAICGA  238 (325)
T ss_pred             eEEEEECCC-HH----HH-HHHHHHhCcCcEEEEecc
Confidence            688887765 11    12 567888999999998864

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=91.76  E-value=0.72  Score=43.85  Aligned_cols=102  Identities=23%  Similarity=0.307  Sum_probs=59.4

Q ss_pred             EEEEEec-CHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc--c-CCHHHHhhcCCEE
Q 020301          167 TVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--A-SSMDEVLREADVI  240 (328)
Q Consensus       167 tvgIiG~-G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~l~ell~~aDiV  240 (328)
                      +|+|||. |.+|..+|-.++ .-|  -++..+|.. ...-+ ..+     + .+.........  . +++.+.++.||+|
T Consensus         2 KI~IIGaaG~VG~~~a~~l~-~~~~~~elvLiDi~-~a~g~-alD-----L-~~~~~~~~i~~~~~~~~~y~~~~daDiv   72 (310)
T cd01337           2 KVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIV-NTPGV-AAD-----L-SHINTPAKVTGYLGPEELKKALKGADVV   72 (310)
T ss_pred             EEEEECCCCHHHHHHHHHHH-hCCCCcEEEEEecC-cccee-ehH-----h-HhCCCcceEEEecCCCchHHhcCCCCEE
Confidence            7999999 999999999863 334  479999987 22111 011     0 11111111111  1 3456779999999


Q ss_pred             EEcCCC--Ch-hhhc-cc--cH-------HHHhcCCCCcEEEEcCCCcccCH
Q 020301          241 SLHPVL--DK-TTYH-LI--NK-------ERLATMKKEAILVNCSRGPVIDE  279 (328)
Q Consensus       241 ~l~~pl--t~-~t~~-li--~~-------~~~~~mk~ga~lIN~aRG~~vde  279 (328)
                      +++.-.  .| +||- ++  |.       +.+..-.|.+++||++-  .+|.
T Consensus        73 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN--PvDv  122 (310)
T cd01337          73 VIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN--PVNS  122 (310)
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC--chhh
Confidence            887653  22 2331 11  11       23344468999999954  5554

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=91.73  E-value=0.74  Score=44.67  Aligned_cols=36  Identities=19%  Similarity=0.398  Sum_probs=31.7

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .|+++.|.|.|.+|...++. ++.+|++|++.+++.+
T Consensus       178 ~g~~VlV~G~G~vG~~avq~-Ak~~Ga~Vi~~~~~~~  213 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKI-GKAFGLRVTVISRSSE  213 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHH-HHHcCCeEEEEeCChH
Confidence            58899999999999999998 5899999999887653

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=91.66  E-value=0.54  Score=46.14  Aligned_cols=102  Identities=21%  Similarity=0.139  Sum_probs=61.0

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HHH-H-----------HhhhhhhhhcCC-CCCcc-
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK-F-----------VTAYGQFLKANG-EQPVT-  223 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~~~-~-----------~~~~~~~~~~~~-~~~~~-  223 (328)
                      ..|..++|.|||+|.+|..+|+.|+ ..|. ++..+|...-..  +.. +           .+...+.+++-. ..... 
T Consensus        38 ~~L~~~~VlviG~GGlGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~  116 (392)
T PRK07878         38 KRLKNARVLVIGAGGLGSPTLLYLA-AAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRL  116 (392)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEE
Confidence            4689999999999999999999985 5565 688888653110  000 0           000000001000 00000 


Q ss_pred             -cc--ccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCC
Q 020301          224 -WK--RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK  264 (328)
Q Consensus       224 -~~--~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~  264 (328)
                       ..  ...+..++++++|+|+.|. .+.+++.++|+...+.-+|
T Consensus       117 ~~~~i~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~~~p  159 (392)
T PRK07878        117 HEFRLDPSNAVELFSQYDLILDGT-DNFATRYLVNDAAVLAGKP  159 (392)
T ss_pred             EeccCChhHHHHHHhcCCEEEECC-CCHHHHHHHHHHHHHcCCC
Confidence             00  1123567899999998875 4678899998887765444

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=91.66  E-value=0.83  Score=45.52  Aligned_cols=125  Identities=18%  Similarity=0.287  Sum_probs=73.2

Q ss_pred             CEEEEEecCHHHHH--HHHHHH---hcCC-cEEEEEcCCchhHHHHHHhhhhhhh-hcCCCCCccccccCCHHHHhhcCC
Q 020301          166 QTVGVIGAGRIGSA--YARMMV---EGFK-MNLIYYDLYQATRLEKFVTAYGQFL-KANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       166 ~tvgIiG~G~IG~~--vA~~l~---~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      .+|.|||.|+. ..  +.+-+.   ..++ -+|..+|..+... +. ...+.+.. +..+ .+......++.++.++.||
T Consensus         1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl-~~-v~~l~~~~~~~~g-~~~~v~~Ttdr~eAl~gAD   76 (437)
T cd05298           1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQ-EK-VAEAVKILFKENY-PEIKFVYTTDPEEAFTDAD   76 (437)
T ss_pred             CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHH-HH-HHHHHHHHHHhhC-CCeEEEEECCHHHHhCCCC
Confidence            37999999986 33  222222   1344 6899999987432 11 11111111 2222 2344555679999999999


Q ss_pred             EEEEcCCCCh-h----------hhcccc----------------------HHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 020301          239 VISLHPVLDK-T----------TYHLIN----------------------KERLATMKKEAILVNCSRGPVIDEVALVEH  285 (328)
Q Consensus       239 iV~l~~plt~-~----------t~~li~----------------------~~~~~~mk~ga~lIN~aRG~~vde~aL~~a  285 (328)
                      ||++..--.- +          -+++++                      .+.++...|++++||.+-.-=+-..++.+.
T Consensus        77 fVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~~~~  156 (437)
T cd05298          77 FVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRL  156 (437)
T ss_pred             EEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHH
Confidence            9987654321 1          122222                      122344458999999998876667777766


Q ss_pred             HHcCCccEE
Q 020301          286 LKQNPMFRV  294 (328)
Q Consensus       286 L~~g~i~ga  294 (328)
                      +...++.|.
T Consensus       157 ~~~~kviGl  165 (437)
T cd05298         157 FPNARILNI  165 (437)
T ss_pred             CCCCCEEEE
Confidence            544455554

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=91.62  E-value=0.74  Score=43.12  Aligned_cols=97  Identities=12%  Similarity=0.100  Sum_probs=58.1

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHH--HH--hhcCC
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EV--LREAD  238 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--el--l~~aD  238 (328)
                      .|.++.|+|.|.+|+.+++.+ ++.|++ |++.+++....  ++...+       +....-.....+..  ..  -...|
T Consensus       159 ~g~~vlI~g~g~vg~~~~~la-~~~G~~~v~~~~~~~~~~--~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~vd  228 (334)
T cd08234         159 PGDSVLVFGAGPIGLLLAQLL-KLNGASRVTVAEPNEEKL--ELAKKL-------GATETVDPSREDPEAQKEDNPYGFD  228 (334)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHHH--HHHHHh-------CCeEEecCCCCCHHHHHHhcCCCCc
Confidence            568999999999999999985 899998 88888765432  111111       11100000001111  11  24579


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      +++.+++..     ......++.|+++..+|+++...
T Consensus       229 ~v~~~~~~~-----~~~~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         229 VVIEATGVP-----KTLEQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             EEEECCCCh-----HHHHHHHHHHhcCCEEEEEecCC
Confidence            998876521     13345567788888888876543

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=91.60  E-value=0.62  Score=42.00  Aligned_cols=38  Identities=26%  Similarity=0.204  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .+.||++.|.|. |.||+.+|+.|+ .-|++|+..+++..
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~-~~G~~V~~~~r~~~   45 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLA-QAGAEVILNGRDPA   45 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence            478999999996 999999999985 67999999998764

>PLN02740 Alcohol dehydrogenase-like

Probab=91.58  E-value=0.94  Score=43.85  Aligned_cols=36  Identities=25%  Similarity=0.371  Sum_probs=31.5

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA  200 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~  200 (328)
                      .|.+|.|+|.|.+|...++. ++.+|+ +|++.+++..
T Consensus       198 ~g~~VlV~G~G~vG~~a~q~-ak~~G~~~Vi~~~~~~~  234 (381)
T PLN02740        198 AGSSVAIFGLGAVGLAVAEG-ARARGASKIIGVDINPE  234 (381)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHCCCCcEEEEcCChH
Confidence            58899999999999999998 489999 6999888654

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=91.54  E-value=0.4  Score=40.43  Aligned_cols=102  Identities=18%  Similarity=0.263  Sum_probs=59.3

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      ..|++|++||+  + +.++++| +.-+.++.++|+++.....               ..... .....++++++||+|++
T Consensus         9 ~~~~~V~~VG~--f-~P~~~~l-~~~~~~v~v~d~~~~~~~~---------------~~~~~-~~~~~~~~l~~aD~vii   68 (147)
T PF04016_consen    9 GPGDKVGMVGY--F-QPLVEKL-KERGAEVRVFDLNPDNIGE---------------EPGDV-PDEDAEEILPWADVVII   68 (147)
T ss_dssp             TTTSEEEEES-----HCCHHHH-CCCCSEEEEEESSGGG--S---------------SCT-E-EGGGHHHHGGG-SEEEE
T ss_pred             cCCCEEEEEcC--c-HHHHHHH-hcCCCCEEEEECCCCCCCC---------------CCCcC-CHHHHHHHHccCCEEEE
Confidence            56899999996  2 2367776 5788999999998754211               00000 22466789999999987


Q ss_pred             cCCCChhhhcccc---HHHHhcCCCCcEEEEcCCC-------------------cccCHHHHHHHHHcCC
Q 020301          243 HPVLDKTTYHLIN---KERLATMKKEAILVNCSRG-------------------PVIDEVALVEHLKQNP  290 (328)
Q Consensus       243 ~~plt~~t~~li~---~~~~~~mk~ga~lIN~aRG-------------------~~vde~aL~~aL~~g~  290 (328)
                      .-.      -++|   ++.|++.++++.++=.+=.                   -+.|.+.+.+++++|.
T Consensus        69 TGs------TlvN~Ti~~iL~~~~~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~~v~d~~~~~~~i~~Gg  132 (147)
T PF04016_consen   69 TGS------TLVNGTIDDILELARNAREVILYGPSAPLHPEALFDYGVTYVGGSRVVDPEKVLRAISEGG  132 (147)
T ss_dssp             ECH------HCCTTTHHHHHHHTTTSSEEEEESCCGGS-GGGGCCTT-SEEEEEEES-HHHHHHHHCTTS
T ss_pred             Eee------eeecCCHHHHHHhCccCCeEEEEecCchhhHHHHHhCCCCEEEEEEEeCHHHHHHHHHcCC
Confidence            631      1233   4556666655544433211                   1356777777777663

; PDB: 3L5O_B 3NPG_A.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=91.33  E-value=0.97  Score=41.21  Aligned_cols=94  Identities=16%  Similarity=0.213  Sum_probs=61.1

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh---cCCE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADV  239 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDi  239 (328)
                      +.|++|.=||+|  |..+++-|| ..|++|++.|.+.+.-.  ..+.+   +.+.+.. ..+ ...+.+++.+   +-|+
T Consensus        58 l~g~~vLDvGCG--gG~Lse~mA-r~Ga~VtgiD~se~~I~--~Ak~h---a~e~gv~-i~y-~~~~~edl~~~~~~FDv  127 (243)
T COG2227          58 LPGLRVLDVGCG--GGILSEPLA-RLGASVTGIDASEKPIE--VAKLH---ALESGVN-IDY-RQATVEDLASAGGQFDV  127 (243)
T ss_pred             CCCCeEEEecCC--ccHhhHHHH-HCCCeeEEecCChHHHH--HHHHh---hhhcccc-ccc-hhhhHHHHHhcCCCccE
Confidence            789999999999  778998874 78999999999875421  11111   1222221 111 2346677776   6899


Q ss_pred             EEE-----cCCCChhhhccccHHHHhcCCCCcEEEE
Q 020301          240 ISL-----HPVLDKTTYHLINKERLATMKKEAILVN  270 (328)
Q Consensus       240 V~l-----~~plt~~t~~li~~~~~~~mk~ga~lIN  270 (328)
                      |++     |+|. |+.   |-+...+++|||.+++-
T Consensus       128 V~cmEVlEHv~d-p~~---~~~~c~~lvkP~G~lf~  159 (243)
T COG2227         128 VTCMEVLEHVPD-PES---FLRACAKLVKPGGILFL  159 (243)
T ss_pred             EEEhhHHHccCC-HHH---HHHHHHHHcCCCcEEEE
Confidence            965     5662 222   44568888899876653

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=91.29  E-value=1.5  Score=43.49  Aligned_cols=127  Identities=16%  Similarity=0.206  Sum_probs=72.2

Q ss_pred             CEEEEEecCHHHH-HHHHHHHh---cCC-cEEEEEcCC-chhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          166 QTVGVIGAGRIGS-AYARMMVE---GFK-MNLIYYDLY-QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       166 ~tvgIiG~G~IG~-~vA~~l~~---~fg-~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      .+|.|||.|+.-. .+.+-+++   .++ -+|..||.. +... +. ...+.+...+....+.......++++.+..|||
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl-~~-v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadf   78 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKL-EI-VGALAKRMVKKAGLPIKVHLTTDRREALEGADF   78 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHH-HH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCE
Confidence            3799999999733 22232222   344 689999998 4332 11 111111111111123344556799999999999


Q ss_pred             EEEcCCCChh-hh----------ccc-------------------cHH---HHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 020301          240 ISLHPVLDKT-TY----------HLI-------------------NKE---RLATMKKEAILVNCSRGPVIDEVALVEHL  286 (328)
Q Consensus       240 V~l~~plt~~-t~----------~li-------------------~~~---~~~~mk~ga~lIN~aRG~~vde~aL~~aL  286 (328)
                      |+++.--... .+          +++                   -.+   .+....|++++||.+-.-=+-..++.+..
T Consensus        79 Vi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~~k~~  158 (419)
T cd05296          79 VFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAVLRHT  158 (419)
T ss_pred             EEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHHHhc
Confidence            9887542221 11          110                   011   22333489999999887766677777665


Q ss_pred             HcCCccEEE
Q 020301          287 KQNPMFRVG  295 (328)
Q Consensus       287 ~~g~i~gaa  295 (328)
                       ..++.|.+
T Consensus       159 -~~rviGlc  166 (419)
T cd05296         159 -GDRVIGLC  166 (419)
T ss_pred             -cCCEEeeC
Confidence             45666664

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=91.27  E-value=0.89  Score=43.11  Aligned_cols=91  Identities=16%  Similarity=0.134  Sum_probs=55.5

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .|.++.|.|.|.+|...++. ++.+|++|++.+++..+.  +..       ++-|....-.  ..  ++.-...|+++.+
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~-a~~~G~~vi~~~~~~~~~--~~a-------~~~Ga~~vi~--~~--~~~~~~~d~~i~~  230 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQV-ALAQGATVHVMTRGAAAR--RLA-------LALGAASAGG--AY--DTPPEPLDAAILF  230 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHH-HHHCCCeEEEEeCChHHH--HHH-------HHhCCceecc--cc--ccCcccceEEEEC
Confidence            47899999999999988887 589999999988876532  222       2223211100  00  0111245766655


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      ... .+    .-...++.++++..++.++.
T Consensus       231 ~~~-~~----~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       231 APA-GG----LVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             CCc-HH----HHHHHHHhhCCCcEEEEEec
Confidence            442 21    23456777888888887663

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PLN02214 cinnamoyl-CoA reductase

Probab=91.22  E-value=0.65  Score=44.36  Aligned_cols=81  Identities=12%  Similarity=0.023  Sum_probs=49.2

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCC--CccccccCCHHHHhhcCC
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREAD  238 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~aD  238 (328)
                      .+.++++.|.|. |-||+.+++.| ..-|.+|.+.+|............... . .....  ........+++++++.+|
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~-~-~~~~~~~~~Dl~d~~~~~~~~~~~d   83 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKIL-LERGYTVKGTVRNPDDPKNTHLRELEG-G-KERLILCKADLQDYEALKAAIDGCD   83 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCchhhhHHHHHHhhC-C-CCcEEEEecCcCChHHHHHHHhcCC
Confidence            467899999998 99999999997 467999999888654211111100000 0 00000  001112245678889999


Q ss_pred             EEEEcCC
Q 020301          239 VISLHPV  245 (328)
Q Consensus       239 iV~l~~p  245 (328)
                      +|+.+..
T Consensus        84 ~Vih~A~   90 (342)
T PLN02214         84 GVFHTAS   90 (342)
T ss_pred             EEEEecC
Confidence            9877664

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=91.19  E-value=1.3  Score=42.77  Aligned_cols=94  Identities=20%  Similarity=0.169  Sum_probs=55.3

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC----HHHHhh--cCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS----MDEVLR--EAD  238 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~ell~--~aD  238 (328)
                      .++.|+|.|.||...+.. ++.+|+ +|++.|+++... + ...++      .+..........+    ..++-.  .+|
T Consensus       170 ~~V~V~GaGpIGLla~~~-a~~~Ga~~Viv~d~~~~Rl-~-~A~~~------~g~~~~~~~~~~~~~~~~~~~t~g~g~D  240 (350)
T COG1063         170 GTVVVVGAGPIGLLAIAL-AKLLGASVVIVVDRSPERL-E-LAKEA------GGADVVVNPSEDDAGAEILELTGGRGAD  240 (350)
T ss_pred             CEEEEECCCHHHHHHHHH-HHHcCCceEEEeCCCHHHH-H-HHHHh------CCCeEeecCccccHHHHHHHHhCCCCCC
Confidence            399999999999998887 478996 677778876542 1 11110      1111110000001    113332  499


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      +++-|.. ++.    .-...++..+++..++.++=
T Consensus       241 ~vie~~G-~~~----~~~~ai~~~r~gG~v~~vGv  270 (350)
T COG1063         241 VVIEAVG-SPP----ALDQALEALRPGGTVVVVGV  270 (350)
T ss_pred             EEEECCC-CHH----HHHHHHHHhcCCCEEEEEec
Confidence            9999987 222    22456677777777777754

>PTZ00188 adrenodoxin reductase; Provisional

Probab=91.16  E-value=1.2  Score=45.14  Aligned_cols=87  Identities=13%  Similarity=0.159  Sum_probs=53.9

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh-------------HHHHHHhhhhhhhhcCCCC---Cccc
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-------------RLEKFVTAYGQFLKANGEQ---PVTW  224 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~-------------~~~~~~~~~~~~~~~~~~~---~~~~  224 (328)
                      ..-..++|+|||-|.-|-..|+.+++..|.+|..|++.+.+             ........|...+...+..   ....
T Consensus        35 ~~~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~V  114 (506)
T PTZ00188         35 NEAKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHV  114 (506)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEe
Confidence            34568999999999999999996555569999999886542             1111112221112122211   1111


Q ss_pred             cccCCHHHHhhcCCEEEEcCCCC
Q 020301          225 KRASSMDEVLREADVISLHPVLD  247 (328)
Q Consensus       225 ~~~~~l~ell~~aDiV~l~~plt  247 (328)
                      ....++++|.+..|.|++++-..
T Consensus       115 G~Dvt~eeL~~~YDAVIlAtGA~  137 (506)
T PTZ00188        115 GVDLKMEELRNHYNCVIFCCGAS  137 (506)
T ss_pred             cCccCHHHHHhcCCEEEEEcCCC
Confidence            12346889989999998887533

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=91.04  E-value=1.1  Score=42.92  Aligned_cols=95  Identities=17%  Similarity=0.196  Sum_probs=56.6

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccc-cccCCHHHHhhcCCEEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiV~l  242 (328)
                      .|.++.|.|.|.+|..+++. ++..|++|++.+.+.+.. +...+.+       |...... .....+.++....|+++-
T Consensus       180 ~g~~vlV~G~G~vG~~av~~-Ak~~G~~vi~~~~~~~~~-~~~~~~~-------Ga~~~i~~~~~~~~~~~~~~~D~vid  250 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKI-AKAMGHHVTVISSSDKKR-EEALEHL-------GADDYLVSSDAAEMQEAADSLDYIID  250 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHH-HHHCCCeEEEEeCCHHHH-HHHHHhc-------CCcEEecCCChHHHHHhcCCCcEEEE
Confidence            57899999999999999998 489999998887765432 1111112       2110000 000123333345788888


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      +++...     .-...++.++++..++.++
T Consensus       251 ~~g~~~-----~~~~~~~~l~~~G~iv~~G  275 (357)
T PLN02514        251 TVPVFH-----PLEPYLSLLKLDGKLILMG  275 (357)
T ss_pred             CCCchH-----HHHHHHHHhccCCEEEEEC
Confidence            876321     1234556677777777765

>PRK13529 malate dehydrogenase; Provisional

Probab=91.02  E-value=7.5  Score=39.87  Aligned_cols=181  Identities=20%  Similarity=0.251  Sum_probs=111.3

Q ss_pred             hCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHh
Q 020301          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (328)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~  186 (328)
                      +..|++.|+--   +.+|--+++-+|+..|-                     .|..|...++.|+|.|..|-.+|+.+..
T Consensus       261 r~~i~~FnDDi---QGTaaV~LAgll~A~r~---------------------~g~~l~d~riv~~GAGsAgiGia~ll~~  316 (563)
T PRK13529        261 RDEICTFNDDI---QGTGAVTLAGLLAALKI---------------------TGEPLSDQRIVFLGAGSAGCGIADQIVA  316 (563)
T ss_pred             ccCCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECCCHHHHHHHHHHHH
Confidence            34677877643   34677778888877762                     2357888999999999999999998753


Q ss_pred             c---CCc-------EEEEEcCCc---h--hHHHHHHhhhhhhhhcCCCCCccc---cccCCHHHHhhcC--CEEEEcCCC
Q 020301          187 G---FKM-------NLIYYDLYQ---A--TRLEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLREA--DVISLHPVL  246 (328)
Q Consensus       187 ~---fg~-------~V~~~d~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ell~~a--DiV~l~~pl  246 (328)
                      +   .|+       +++.+|+.-   .  ..+..+...|.   +.... ...+   ....+|.|+++.+  |+++=+   
T Consensus       317 ~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa---~~~~~-~~~~~~~~~~~~L~e~v~~~kPtvLIG~---  389 (563)
T PRK13529        317 AMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYA---RKREE-LADWDTEGDVISLLEVVRNVKPTVLIGV---  389 (563)
T ss_pred             HHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHh---hhccc-ccccccccCCCCHHHHHhccCCCEEEEe---
Confidence            2   466       899988751   1  11222222332   11110 0001   1225899999998  988643   


Q ss_pred             ChhhhccccHHHHhcCCC---CcEEEEcCCCcccCHHHHHHHHH--cCC-ccEEEEeCCCCCCCC-C---CCcccCCCeE
Q 020301          247 DKTTYHLINKERLATMKK---EAILVNCSRGPVIDEVALVEHLK--QNP-MFRVGLDVFEDEPYM-K---PGLSEMKNAI  316 (328)
Q Consensus       247 t~~t~~li~~~~~~~mk~---ga~lIN~aRG~~vde~aL~~aL~--~g~-i~gaalDV~~~EP~~-~---~~L~~~~nvi  316 (328)
                       ...-+.|+++.++.|.+   ..++.=.|.-..--|-.-.+|.+  +|+ |.+.|.- |  .|.. +   ..--+..|++
T Consensus       390 -S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGsp-f--~pv~~~G~~~~p~Q~NN~~  465 (563)
T PRK13529        390 -SGQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSP-F--APVEYNGKTYPIGQCNNAY  465 (563)
T ss_pred             -cCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCC-C--CCeeeCCeEeccCcCccee
Confidence             12247999999999987   89999998877633333333333  353 4444321 1  1110 0   1234568888


Q ss_pred             EcCCCC
Q 020301          317 VVPHIA  322 (328)
Q Consensus       317 lTPHia  322 (328)
                      +-|=++
T Consensus       466 iFPGig  471 (563)
T PRK13529        466 IFPGLG  471 (563)
T ss_pred             ecccch
Confidence            888765

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=90.99  E-value=1.2  Score=42.59  Aligned_cols=94  Identities=16%  Similarity=0.150  Sum_probs=57.2

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc-cCCHHHHhh-----c
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLR-----E  236 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~-----~  236 (328)
                      .|.++.|.|. |.+|...++. ++.+|++|++.+++....  ++..      +.-|....-... ..++.+.+.     .
T Consensus       158 ~g~~VlV~GaaG~vG~~aiql-Ak~~G~~Vi~~~~~~~k~--~~~~------~~lGa~~vi~~~~~~~~~~~i~~~~~~g  228 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQL-AKLHGCYVVGSAGSSQKV--DLLK------NKLGFDEAFNYKEEPDLDAALKRYFPEG  228 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHH-HHHcCCEEEEEcCCHHHH--HHHH------HhcCCCEEEECCCcccHHHHHHHHCCCC
Confidence            5889999999 9999999998 489999999988765432  1111      011221111101 113443332     3


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .|+++-++..  .    .-...++.++++..++.++
T Consensus       229 vD~v~d~vG~--~----~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        229 IDIYFDNVGG--D----MLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             cEEEEECCCH--H----HHHHHHHHhccCCEEEEEC
Confidence            6888877651  1    1245677788888887664

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=90.92  E-value=1.2  Score=42.82  Aligned_cols=36  Identities=33%  Similarity=0.384  Sum_probs=31.7

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA  200 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~  200 (328)
                      .|.+|.|+|.|.+|...++. ++.+|+ +|++.+++..
T Consensus       187 ~g~~VlV~G~g~vG~~a~q~-ak~~G~~~vi~~~~~~~  223 (369)
T cd08301         187 KGSTVAIFGLGAVGLAVAEG-ARIRGASRIIGVDLNPS  223 (369)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHH
Confidence            58899999999999999998 489999 7999988754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=90.89  E-value=1.2  Score=42.30  Aligned_cols=94  Identities=20%  Similarity=0.214  Sum_probs=55.4

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHH---HHhh--cC
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD---EVLR--EA  237 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---ell~--~a  237 (328)
                      .|+++.|.|.|.+|...++.+ +.+|.+ |++.+++....  +....+       |....-.....+.+   ++..  ..
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~a-~~~G~~~v~~~~~~~~~~--~~~~~~-------Ga~~~i~~~~~~~~~~~~~~~~~~~  229 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQCA-VALGAKSVTAIDINSEKL--ALAKSL-------GAMQTFNSREMSAPQIQSVLRELRF  229 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHHHH--HHHHHc-------CCceEecCcccCHHHHHHHhcCCCC
Confidence            478999999999999999984 899997 67888765432  111222       21110000001122   2222  34


Q ss_pred             C-EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          238 D-VISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       238 D-iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      | +++-|... +.   .+ ...++.++++..++..+
T Consensus       230 d~~v~d~~G~-~~---~~-~~~~~~l~~~G~iv~~G  260 (347)
T PRK10309        230 DQLILETAGV-PQ---TV-ELAIEIAGPRAQLALVG  260 (347)
T ss_pred             CeEEEECCCC-HH---HH-HHHHHHhhcCCEEEEEc
Confidence            6 66666542 21   12 45678888888888875

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=90.71  E-value=2.3  Score=42.39  Aligned_cols=115  Identities=15%  Similarity=0.112  Sum_probs=66.5

Q ss_pred             CEEEEEec-CHHHHHHHHHHHhc--CC------cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCc--cccccCCHHHHh
Q 020301          166 QTVGVIGA-GRIGSAYARMMVEG--FK------MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVL  234 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~~--fg------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell  234 (328)
                      .+|+|||. |.+|..+|-.|+.+  ||      -+++.+|+..+.......+-.      +...+.  ...-..+-.+.+
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~------daa~~~~~~v~i~~~~ye~~  174 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELE------DSLYPLLREVSIGIDPYEVF  174 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHH------HhhhhhcCceEEecCCHHHh
Confidence            37999999 99999999886532  22      378889987654322222210      111010  111012445778


Q ss_pred             hcCCEEEEcCCCC--h-hhhc--------ccc--HHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          235 READVISLHPVLD--K-TTYH--------LIN--KERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       235 ~~aDiV~l~~plt--~-~t~~--------li~--~~~~~~-mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      +.||+|++..-..  + +|+.        ++.  ...+.. -+|++++|+++  ..+|.-+.+-.=.+
T Consensus       175 kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~s  240 (444)
T PLN00112        175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNA  240 (444)
T ss_pred             CcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHc
Confidence            9999999986531  1 1211        111  123444 46799999996  67777766554333

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.71  E-value=0.36  Score=45.72  Aligned_cols=38  Identities=29%  Similarity=0.316  Sum_probs=33.6

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~  201 (328)
                      =.|+|++|+|+|.+|.++++-+ ++.|+ +|++.|.++++
T Consensus       191 ~~GstvAVfGLG~VGLav~~Ga-ka~GAsrIIgvDiN~~K  229 (375)
T KOG0022|consen  191 EPGSTVAVFGLGGVGLAVAMGA-KAAGASRIIGVDINPDK  229 (375)
T ss_pred             CCCCEEEEEecchHHHHHHHhH-HhcCcccEEEEecCHHH
Confidence            3689999999999999999984 78897 79999998764

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=90.60  E-value=7.5  Score=36.70  Aligned_cols=105  Identities=18%  Similarity=0.228  Sum_probs=66.6

Q ss_pred             cCCCEEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       163 l~g~tvgIiG~G-~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      +.|+|+..+|=| +++.++.... ..|||+|...-|-.-...+++.+.-.+.+...|   ....-..++++.++.||+|.
T Consensus       151 l~g~k~a~vGDgNNv~nSl~~~~-a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g---~~i~~t~d~~eAv~gADvvy  226 (310)
T COG0078         151 LKGLKLAYVGDGNNVANSLLLAA-AKLGMDVRIATPKGYEPDPEVVEKAKENAKESG---GKITLTEDPEEAVKGADVVY  226 (310)
T ss_pred             ccCcEEEEEcCcchHHHHHHHHH-HHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcC---CeEEEecCHHHHhCCCCEEE
Confidence            999999999977 5777777764 579999998877532222222211001111111   12223468999999999996


Q ss_pred             EcCCC--Chhhh-----------ccccHHHHhcCCCCcEEEEc
Q 020301          242 LHPVL--DKTTY-----------HLINKERLATMKKEAILVNC  271 (328)
Q Consensus       242 l~~pl--t~~t~-----------~li~~~~~~~mk~ga~lIN~  271 (328)
                      .-+..  ..+.+           --+|++.++.-+++++|.-+
T Consensus       227 TDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC  269 (310)
T COG0078         227 TDVWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC  269 (310)
T ss_pred             ecCcccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence            44322  12221           34788888888999998887

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=90.52  E-value=1.7  Score=41.20  Aligned_cols=95  Identities=18%  Similarity=0.183  Sum_probs=57.8

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH----HHHhh--c
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVLR--E  236 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ell~--~  236 (328)
                      .|+++.|.|.|.+|+.+++.+ +..|+ +|++.+++....  +....+       |....-.....++    .++..  .
T Consensus       172 ~g~~vlI~g~g~vG~~a~q~a-~~~G~~~v~~~~~~~~~~--~~~~~~-------ga~~~i~~~~~~~~~~l~~~~~~~~  241 (351)
T cd08233         172 PGDTALVLGAGPIGLLTILAL-KAAGASKIIVSEPSEARR--ELAEEL-------GATIVLDPTEVDVVAEVRKLTGGGG  241 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH--HHHHHh-------CCCEEECCCccCHHHHHHHHhCCCC
Confidence            578999999999999999985 89999 788888765432  111112       2111100011122    23332  3


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .|+++-+.... .    .-...++.++++..++.++.
T Consensus       242 ~d~vid~~g~~-~----~~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         242 VDVSFDCAGVQ-A----TLDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             CCEEEECCCCH-H----HHHHHHHhccCCCEEEEEcc
Confidence            89998876521 1    12455677888888887753

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=90.52  E-value=1.1  Score=44.41  Aligned_cols=126  Identities=10%  Similarity=0.183  Sum_probs=71.8

Q ss_pred             EEEEEecCHHHHH--HHHHHHh---cC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          167 TVGVIGAGRIGSA--YARMMVE---GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       167 tvgIiG~G~IG~~--vA~~l~~---~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      +|.|||.|+. ..  +.+-+++   .| +-+|..||..+... +. ...+.+...+....+......+++++.++.||||
T Consensus         2 KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl-~~-v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfV   78 (425)
T cd05197           2 KIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERL-DI-ILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFV   78 (425)
T ss_pred             EEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHH-HH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEE
Confidence            7999999985 32  2222221   34 36899999886431 11 1111111222222234455568999999999999


Q ss_pred             EEcCCCCh-hh----------hcccc----------------------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020301          241 SLHPVLDK-TT----------YHLIN----------------------KERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (328)
Q Consensus       241 ~l~~plt~-~t----------~~li~----------------------~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~  287 (328)
                      ++.+--.. +.          ++++.                      .+.+....|++++||.+-.-=+-..++.+...
T Consensus        79 i~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~~~~~p  158 (425)
T cd05197          79 INQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAVRRYVP  158 (425)
T ss_pred             EEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHHHHhCC
Confidence            88764322 11          11111                      11222334899999998877666777777753


Q ss_pred             cCCccEEE
Q 020301          288 QNPMFRVG  295 (328)
Q Consensus       288 ~g~i~gaa  295 (328)
                      ..++.|.+
T Consensus       159 ~~rviG~c  166 (425)
T cd05197         159 PEKAVGLC  166 (425)
T ss_pred             CCcEEEEC
Confidence            34555543

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=90.43  E-value=1.1  Score=45.48  Aligned_cols=102  Identities=20%  Similarity=0.149  Sum_probs=65.7

Q ss_pred             ccCCCEEEEEec---CHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (328)
Q Consensus       162 ~l~g~tvgIiG~---G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (328)
                      .+.|++|+++|=   +++..+++..+ ..|| |+|.+..|..-...+++.+    .++..|   .......++++.+++|
T Consensus       171 ~l~glkVa~vGD~~~~rva~Sl~~~l-~~~g~~~v~l~~P~~~~~p~~~~~----~a~~~G---~~v~i~~d~~eav~~A  242 (525)
T PRK13376        171 DNSFIHIALVGDLLHGRTVHSKVNGL-KIFKNVKVDLIAPEELAMPEHYVE----KMKKNG---FEVRIFSSIEEYLSQK  242 (525)
T ss_pred             CcCCCEEEEECCCCCCcHHHHHHHHH-HhcCCcEEEEECCccccCCHHHHH----HHHHcC---CeEEEEcCHHHHhccC
Confidence            478999999998   58999999986 5798 9999988743211112111    111212   1223357899999999


Q ss_pred             CEE--EE-------cCCCC-----hhh--hccccHHHHhcCCCCcEEEEc
Q 020301          238 DVI--SL-------HPVLD-----KTT--YHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       238 DiV--~l-------~~plt-----~~t--~~li~~~~~~~mk~ga~lIN~  271 (328)
                      |+.  ..       .++..     .+.  .-.++++.++.+|+++++.=+
T Consensus       243 D~tdvw~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHc  292 (525)
T PRK13376        243 DVAKIWYFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHP  292 (525)
T ss_pred             CccceEEEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECC
Confidence            952  12       22211     111  234689999999999888776

>PRK08324 short chain dehydrogenase; Validated

Probab=90.31  E-value=0.79  Score=48.21  Aligned_cols=40  Identities=30%  Similarity=0.373  Sum_probs=34.6

Q ss_pred             cccCCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       161 ~~l~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      ..+.|+++.|.| .|.||+.+|+.| ...|++|+..+++...
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L-~~~Ga~Vvl~~r~~~~  458 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRL-AAEGACVVLADLDEEA  458 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHH-HHCcCEEEEEeCCHHH
Confidence            457899999999 599999999997 5779999999998643

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=90.27  E-value=1.6  Score=40.77  Aligned_cols=94  Identities=18%  Similarity=0.236  Sum_probs=56.9

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH-HHHhhcCCEEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~aDiV~l  242 (328)
                      .|.++.|+|.|.+|+.+++.+ +.+|.+|++.+++....  ++...+       +....-.....+. ...-...|+++-
T Consensus       162 ~~~~vlI~g~g~iG~~~~~~a-~~~G~~v~~~~~~~~~~--~~~~~~-------g~~~~~~~~~~~~~~~~~~~~d~vi~  231 (330)
T cd08245         162 PGERVAVLGIGGLGHLAVQYA-RAMGFETVAITRSPDKR--ELARKL-------GADEVVDSGAELDEQAAAGGADVILV  231 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH--HHHHHh-------CCcEEeccCCcchHHhccCCCCEEEE
Confidence            467899999999999998885 89999999998876432  111111       1111000000011 111235788887


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      ++....     ...+.++.|+++..+|+++
T Consensus       232 ~~~~~~-----~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         232 TVVSGA-----AAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             CCCcHH-----HHHHHHHhcccCCEEEEEC
Confidence            765211     2355678888888888875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=90.27  E-value=1.3  Score=42.55  Aligned_cols=37  Identities=32%  Similarity=0.416  Sum_probs=31.9

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~  201 (328)
                      .|.++.|.|.|.||...++. ++.+|+ +|++.+++...
T Consensus       185 ~g~~VlV~G~G~iG~~a~q~-Ak~~G~~~Vi~~~~~~~~  222 (368)
T TIGR02818       185 EGDTVAVFGLGGIGLSVIQG-ARMAKASRIIAIDINPAK  222 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHH
Confidence            47899999999999999998 489999 79999887643

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=90.21  E-value=0.66  Score=42.77  Aligned_cols=97  Identities=15%  Similarity=0.181  Sum_probs=69.8

Q ss_pred             HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccH
Q 020301          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (328)
Q Consensus       177 G~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~  256 (328)
                      |..+|-.++ .-|-.|+..||+.+-..++..    ...++.|     ....++-.+..+.+.+.++..|..+.|-++ -+
T Consensus        33 Ga~mAiefA-eAGHDVVLaePn~d~~dd~~w----~~vedAG-----V~vv~dD~eaa~~~Ei~VLFTPFGk~T~~I-ar  101 (340)
T COG4007          33 GARMAIEFA-EAGHDVVLAEPNRDIMDDEHW----KRVEDAG-----VEVVSDDAEAAEHGEIHVLFTPFGKATFGI-AR  101 (340)
T ss_pred             chHHHHHHH-HcCCcEEeecCCccccCHHHH----HHHHhcC-----cEEecCchhhhhcceEEEEecccchhhHHH-HH
Confidence            677887775 569999999998753322211    1122333     222345567889999999999999999884 48


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020301          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (328)
Q Consensus       257 ~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~  287 (328)
                      +.++.++.|+++.||..-+.   -.|+.-|+
T Consensus       102 ei~~hvpEgAVicnTCT~sp---~vLy~~LE  129 (340)
T COG4007         102 EILEHVPEGAVICNTCTVSP---VVLYYSLE  129 (340)
T ss_pred             HHHhhCcCCcEecccccCch---hHHHHHhh
Confidence            89999999999999987554   45677763

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.09  E-value=2.1  Score=33.12  Aligned_cols=80  Identities=18%  Similarity=0.095  Sum_probs=48.2

Q ss_pred             EEEEeCC--CCchHHHHHHHhCCCeEEEecCCCCCCCHH--HHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEE
Q 020301           17 RVVSTKP--MPGTRWINLLIEQDCRVEICTQKKTILSVE--DIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (328)
Q Consensus        17 ~vlv~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~   92 (328)
                      +||+...  -....+.+.+++.|+++... ..+...+..  .+...+. .+|.||+.. ..++......+.         
T Consensus         1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h-g~~~~~~~~~~~l~~~i~-~aD~VIv~t-~~vsH~~~~~vk---------   68 (97)
T PF10087_consen    1 SVLIVGGREDRERRYKRILEKYGGKLIHH-GRDGGDEKKASRLPSKIK-KADLVIVFT-DYVSHNAMWKVK---------   68 (97)
T ss_pred             CEEEEcCCcccHHHHHHHHHHcCCEEEEE-ecCCCCccchhHHHHhcC-CCCEEEEEe-CCcChHHHHHHH---------
Confidence            3556555  33345678888999988766 222222223  3677776 699888763 456666655443         


Q ss_pred             ccccCCccChhHHHhCCceEecCCCC
Q 020301           93 MAVGYNNVDVNAANKYGIAVGNTPGV  118 (328)
Q Consensus        93 ~g~G~d~id~~~~~~~gI~v~n~p~~  118 (328)
                                +.|++.||++....+.
T Consensus        69 ----------~~akk~~ip~~~~~~~   84 (97)
T PF10087_consen   69 ----------KAAKKYGIPIIYSRSR   84 (97)
T ss_pred             ----------HHHHHcCCcEEEECCC
Confidence                      3466777777665543

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=90.08  E-value=0.32  Score=43.38  Aligned_cols=106  Identities=14%  Similarity=0.178  Sum_probs=51.4

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhH--HHHHHhhhhhhhhcCCCC--Ccccc--ccCC---HHHHhhc
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATR--LEKFVTAYGQFLKANGEQ--PVTWK--RASS---MDEVLRE  236 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~--~~~~---l~ell~~  236 (328)
                      +.-=+|.| +|+.+.... ..++++ .++....+...  .+.....+....+.-|..  +....  ...+   .+.++++
T Consensus        45 vF~DlGSG-~G~~v~~aa-l~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~  122 (205)
T PF08123_consen   45 VFYDLGSG-VGNVVFQAA-LQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSD  122 (205)
T ss_dssp             EEEEES-T-TSHHHHHHH-HHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGHC
T ss_pred             EEEECCCC-CCHHHHHHH-HHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhcC
Confidence            44456666 578877763 467886 88887665421  111112222222211211  11111  1112   3456799


Q ss_pred             CCEEEEcC-CCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          237 ADVISLHP-VLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       237 aDiV~l~~-plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      ||+|+++- -.+++...-+ .+.|..||+|+.+|.+.+-.
T Consensus       123 AdvVf~Nn~~F~~~l~~~L-~~~~~~lk~G~~IIs~~~~~  161 (205)
T PF08123_consen  123 ADVVFVNNTCFDPDLNLAL-AELLLELKPGARIISTKPFC  161 (205)
T ss_dssp             -SEEEE--TTT-HHHHHHH-HHHHTTS-TT-EEEESS-SS
T ss_pred             CCEEEEeccccCHHHHHHH-HHHHhcCCCCCEEEECCCcC
Confidence            99998753 2345555545 78889999999999886533

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=90.08  E-value=0.78  Score=47.16  Aligned_cols=38  Identities=18%  Similarity=0.152  Sum_probs=32.5

Q ss_pred             cCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       163 l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      -.|+++.|.|. |.||+.+++.|+ ..|++|.+++|+...
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LL-k~G~~Vval~Rn~ek  116 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELL-KLGFRVRAGVRSAQR  116 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHH-HCCCeEEEEeCCHHH
Confidence            46889999997 999999999974 679999999987643

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=89.97  E-value=1.6  Score=41.19  Aligned_cols=95  Identities=15%  Similarity=0.177  Sum_probs=57.2

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcccccc-CCHHH----Hhh-cC
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDE----VLR-EA  237 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~e----ll~-~a  237 (328)
                      .|+++.|.|.|.+|+.+++.+ +.+|++|++.+++.+..  +....+       |....-.... .++.+    +.. ..
T Consensus       165 ~~~~vlV~g~g~vg~~~~~~a-~~~G~~vi~~~~~~~~~--~~~~~~-------g~~~~i~~~~~~~~~~~~~~~~~~~~  234 (345)
T cd08260         165 PGEWVAVHGCGGVGLSAVMIA-SALGARVIAVDIDDDKL--ELAREL-------GAVATVNASEVEDVAAAVRDLTGGGA  234 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEeCCHHHH--HHHHHh-------CCCEEEccccchhHHHHHHHHhCCCC
Confidence            478999999999999999985 89999999887765432  111222       2111100011 12222    221 47


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      |+++-++.. ..    .-...+..|+++..+|+.+.
T Consensus       235 d~vi~~~g~-~~----~~~~~~~~l~~~g~~i~~g~  265 (345)
T cd08260         235 HVSVDALGI-PE----TCRNSVASLRKRGRHVQVGL  265 (345)
T ss_pred             CEEEEcCCC-HH----HHHHHHHHhhcCCEEEEeCC
Confidence            888776542 11    12345777888888887754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK10537 voltage-gated potassium channel; Provisional

Probab=89.96  E-value=1.3  Score=43.55  Aligned_cols=90  Identities=8%  Similarity=-0.099  Sum_probs=54.0

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH----hhcCCEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI  240 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV  240 (328)
                      ..++-|+|+|++|+.+++.| +..|.++.+.|+....   +        ...++.. .-....++.+.+    +++|+.|
T Consensus       240 k~HvII~G~g~lg~~v~~~L-~~~g~~vvVId~d~~~---~--------~~~~g~~-vI~GD~td~e~L~~AgI~~A~aV  306 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGL-RQRGQAVTVIVPLGLE---H--------RLPDDAD-LIPGDSSDSAVLKKAGAARARAI  306 (393)
T ss_pred             CCeEEEECCChHHHHHHHHH-HHCCCCEEEEECchhh---h--------hccCCCc-EEEeCCCCHHHHHhcCcccCCEE
Confidence            56799999999999999997 5778888888865321   1        0111211 111112233322    5689999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEE
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILV  269 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lI  269 (328)
                      +++.+...++..  -....+.+.|+..+|
T Consensus       307 I~~t~dD~~Nl~--ivL~ar~l~p~~kII  333 (393)
T PRK10537        307 LALRDNDADNAF--VVLAAKEMSSDVKTV  333 (393)
T ss_pred             EEcCCChHHHHH--HHHHHHHhCCCCcEE
Confidence            988885544433  233455566654444

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=89.95  E-value=1.1  Score=42.84  Aligned_cols=106  Identities=19%  Similarity=0.210  Sum_probs=58.7

Q ss_pred             EEEEEec-CHHHHHHHHHHHhcCCc-------EEEEEcCCchh-HHHH-HHhhhhhhhhcCCCCCc--cccccCCHHHHh
Q 020301          167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQAT-RLEK-FVTAYGQFLKANGEQPV--TWKRASSMDEVL  234 (328)
Q Consensus       167 tvgIiG~-G~IG~~vA~~l~~~fg~-------~V~~~d~~~~~-~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~l~ell  234 (328)
                      +|+|||. |.+|+.+|-.|. ..|.       ++..+|..... ..+. ..+-     . +...+.  ...-..+..+.+
T Consensus         5 KV~IIGa~G~VG~~~a~~l~-~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl-----~-~~~~~~~~~~~i~~~~~~~~   77 (323)
T TIGR01759         5 RVAVTGAAGQIGYSLLFRIA-SGELFGKDQPVVLHLLDIPPAMKALEGVAMEL-----E-DCAFPLLAGVVATTDPEEAF   77 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHH-hCCcccCCCccEEEEEecCCcccccchHHHHH-----h-hccccccCCcEEecChHHHh
Confidence            7999999 999999998763 3343       79999985421 1111 1110     0 011010  011113556788


Q ss_pred             hcCCEEEEcCCCC--h-hhhcc-c--cH-------HHHhcCCC-CcEEEEcCCCcccCHHH
Q 020301          235 READVISLHPVLD--K-TTYHL-I--NK-------ERLATMKK-EAILVNCSRGPVIDEVA  281 (328)
Q Consensus       235 ~~aDiV~l~~plt--~-~t~~l-i--~~-------~~~~~mk~-ga~lIN~aRG~~vde~a  281 (328)
                      +.||+|+++.-..  + +|+.- +  |.       ..+....| ++++|.++  ..+|.-.
T Consensus        78 ~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t  136 (323)
T TIGR01759        78 KDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA  136 (323)
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            9999999876432  1 23321 1  11       12333434 89999986  5555443

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=89.82  E-value=1.9  Score=41.42  Aligned_cols=38  Identities=24%  Similarity=0.251  Sum_probs=32.1

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~  201 (328)
                      ..|.++.|+|.|.+|...++. ++.+|+ +|++.+++...
T Consensus       183 ~~g~~vlV~G~g~vG~~~~~~-a~~~G~~~Vi~~~~~~~~  221 (365)
T cd08277         183 EPGSTVAVFGLGAVGLSAIMG-AKIAGASRIIGVDINEDK  221 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEeCCHHH
Confidence            358899999999999999998 589999 79998886543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=89.73  E-value=1.9  Score=39.79  Aligned_cols=95  Identities=22%  Similarity=0.192  Sum_probs=56.6

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH----HHHh--hc
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVL--RE  236 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ell--~~  236 (328)
                      .|.++.|.|.|.+|+.+++.+ +..|++ |++.++.....  +..+.+       +....-.....++    .++.  ..
T Consensus       129 ~~~~vlI~g~g~vg~~~~~la-~~~g~~~v~~~~~~~~~~--~~~~~~-------g~~~~~~~~~~~~~~~l~~~~~~~~  198 (312)
T cd08269         129 AGKTVAVIGAGFIGLLFLQLA-AAAGARRVIAIDRRPARL--ALAREL-------GATEVVTDDSEAIVERVRELTGGAG  198 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHHH--HHHHHh-------CCceEecCCCcCHHHHHHHHcCCCC
Confidence            578899999999999999984 899999 88887764322  122222       1111100011122    2222  23


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .|+++-+....     ......++.|+++..+++++.
T Consensus       199 vd~vld~~g~~-----~~~~~~~~~l~~~g~~~~~g~  230 (312)
T cd08269         199 ADVVIEAVGHQ-----WPLDLAGELVAERGRLVIFGY  230 (312)
T ss_pred             CCEEEECCCCH-----HHHHHHHHHhccCCEEEEEcc
Confidence            78887765421     123445677888888887753

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PRK06172 short chain dehydrogenase; Provisional

Probab=89.73  E-value=0.7  Score=41.54  Aligned_cols=39  Identities=23%  Similarity=0.195  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .+.||++.|.|. |.||+.+|+.|+ .-|++|+..+++...
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~-~~G~~v~~~~r~~~~   43 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFA-REGAKVVVADRDAAG   43 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence            477999999996 789999999985 679999999988643

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.64  E-value=0.91  Score=40.51  Aligned_cols=39  Identities=26%  Similarity=0.309  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      ++.++++.|+|. |.||+++++.|+ ..|++|++.+|+...
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~-~~G~~V~~~~r~~~~   41 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFA-AEGARVVVTDRNEEA   41 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence            367899999996 899999999984 679999999998643

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.59  E-value=0.5  Score=46.95  Aligned_cols=113  Identities=19%  Similarity=0.149  Sum_probs=66.5

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhc--CCCCCccccccCCHHHHhhcCCEEEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA--NGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      +-+++|+|+|.+|+++|+.| ...|.+|.++|........+.       ++.  .|.... . ...+ .+.+.++|+|+.
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~-------l~~~~~g~~~~-~-~~~~-~~~~~~~d~vV~   74 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFL-ARQGIPFAVMDSREQPPGLDT-------LAREFPDVELR-C-GGFD-CELLVQASEIII   74 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHH-HhCCCeEEEEeCCCCchhHHH-------HHhhcCCcEEE-e-CCCC-hHHhcCCCEEEE
Confidence            45799999999999999997 689999999997643211110       111  011100 0 0112 345678898866


Q ss_pred             cC--CCC-hhh-------hccccHH-HH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          243 HP--VLD-KTT-------YHLINKE-RL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       243 ~~--plt-~~t-------~~li~~~-~~-~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      .-  |.+ |+-       ..++++- .+ ..++...+-|--+.|..--..-+...|+.
T Consensus        75 sp~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~  132 (448)
T PRK03803         75 SPGLALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA  132 (448)
T ss_pred             CCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence            53  322 221       1234433 22 23444455666678988888888888875

>PRK06114 short chain dehydrogenase; Provisional

Probab=89.58  E-value=0.78  Score=41.45  Aligned_cols=38  Identities=29%  Similarity=0.304  Sum_probs=32.3

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .+.||++-|.|. |-||+.+|+.| ...|++|++.+++..
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l-~~~G~~v~~~~r~~~   43 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGL-AQAGADVALFDLRTD   43 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence            478999999985 58999999998 478999999998754

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=89.56  E-value=2  Score=40.61  Aligned_cols=94  Identities=17%  Similarity=0.140  Sum_probs=57.0

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccc-cccCCHHHHh-----hc
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVL-----RE  236 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell-----~~  236 (328)
                      .|.++.|.|. |.+|+.+++. ++.+|++|++.+++....  ++...      .-|....-. ....++.+.+     ..
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiql-Ak~~G~~Vi~~~~~~~~~--~~~~~------~lGa~~vi~~~~~~~~~~~i~~~~~~g  221 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQL-AKLKGCYVVGSAGSDEKV--DLLKN------KLGFDDAFNYKEEPDLDAALKRYFPNG  221 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHH-HHHcCCEEEEEeCCHHHH--HHHHH------hcCCceeEEcCCcccHHHHHHHhCCCC
Confidence            5789999998 9999999998 489999999887765432  11111      012211100 0111333322     24


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .|+++-++..  .    .-.+.++.++++..+++.+
T Consensus       222 vd~v~d~~g~--~----~~~~~~~~l~~~G~iv~~G  251 (338)
T cd08295         222 IDIYFDNVGG--K----MLDAVLLNMNLHGRIAACG  251 (338)
T ss_pred             cEEEEECCCH--H----HHHHHHHHhccCcEEEEec
Confidence            6888876541  1    1245677788888888765

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.55  E-value=0.49  Score=47.33  Aligned_cols=111  Identities=23%  Similarity=0.317  Sum_probs=65.7

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .|++++|+|+|.-|.++|+.| +. |++|+++|....... .. ..    .+  . ...  .. ....+.+.++|+|+..
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L-~~-g~~v~v~D~~~~~~~-~~-~~----~~--~-~~~--~~-~~~~~~~~~~d~vV~S   70 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEEL-QN-KYDVIVYDDLKANRD-IF-EE----LY--S-KNA--IA-ALSDSRWQNLDKIVLS   70 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHH-hC-CCEEEEECCCCCchH-HH-Hh----hh--c-Cce--ec-cCChhHhhCCCEEEEC
Confidence            478999999999999999997 45 999999995432211 10 00    00  0 000  01 1123456789998765


Q ss_pred             C--CC-Chhh-------hccccHHHH--hcCCC-CcEEEEcCCCcccCHHHHHHHHHc
Q 020301          244 P--VL-DKTT-------YHLINKERL--ATMKK-EAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       244 ~--pl-t~~t-------~~li~~~~~--~~mk~-ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      -  |. +|.-       ..++++-.|  ..+++ ..+=|--+-|..--..-|...|+.
T Consensus        71 PgI~~~~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~  128 (454)
T PRK01368         71 PGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS  128 (454)
T ss_pred             CCCCCCCHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence            3  22 2211       124444433  33432 345555567988888888888886

>PRK10083 putative oxidoreductase; Provisional

Probab=89.53  E-value=1.8  Score=40.72  Aligned_cols=95  Identities=17%  Similarity=0.227  Sum_probs=53.9

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhc-CCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh----cC
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR----EA  237 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~-fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~----~a  237 (328)
                      .|.++.|.|.|.+|+.+++.+ +. +|++ |++.++.....  +....+       |....-.....++.+.+.    ..
T Consensus       160 ~g~~vlI~g~g~vG~~~~~~a-~~~~G~~~v~~~~~~~~~~--~~~~~~-------Ga~~~i~~~~~~~~~~~~~~g~~~  229 (339)
T PRK10083        160 EQDVALIYGAGPVGLTIVQVL-KGVYNVKAVIVADRIDERL--ALAKES-------GADWVINNAQEPLGEALEEKGIKP  229 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHhCCCCEEEEEcCCHHHH--HHHHHh-------CCcEEecCccccHHHHHhcCCCCC
Confidence            478999999999999999984 65 6986 66777765432  111112       221110011123444332    23


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      |+++-+... +.    .-.+.++.++++..+|+++.
T Consensus       230 d~vid~~g~-~~----~~~~~~~~l~~~G~~v~~g~  260 (339)
T PRK10083        230 TLIIDAACH-PS----ILEEAVTLASPAARIVLMGF  260 (339)
T ss_pred             CEEEECCCC-HH----HHHHHHHHhhcCCEEEEEcc
Confidence            566655441 11    12455677788888888754

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=89.43  E-value=1.9  Score=40.17  Aligned_cols=93  Identities=22%  Similarity=0.183  Sum_probs=55.6

Q ss_pred             CCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-----hcC
Q 020301          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA  237 (328)
Q Consensus       164 ~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~~a  237 (328)
                      .|.++.|.| .|.+|+.+++.+ +.+|++|++.+++.+..  ++.       ++.|....-.....++.+.+     ...
T Consensus       143 ~g~~vlI~ga~g~vG~~aiqlA-~~~G~~vi~~~~s~~~~--~~l-------~~~Ga~~vi~~~~~~~~~~v~~~~~~gv  212 (329)
T cd08294         143 AGETVVVNGAAGAVGSLVGQIA-KIKGCKVIGCAGSDDKV--AWL-------KELGFDAVFNYKTVSLEEALKEAAPDGI  212 (329)
T ss_pred             CCCEEEEecCccHHHHHHHHHH-HHcCCEEEEEeCCHHHH--HHH-------HHcCCCEEEeCCCccHHHHHHHHCCCCc
Confidence            478999999 599999999984 89999999888765432  111       11222111111112332222     235


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      |+|+-++..  +    .....++.++++..+++.+
T Consensus       213 d~vld~~g~--~----~~~~~~~~l~~~G~iv~~g  241 (329)
T cd08294         213 DCYFDNVGG--E----FSSTVLSHMNDFGRVAVCG  241 (329)
T ss_pred             EEEEECCCH--H----HHHHHHHhhccCCEEEEEc
Confidence            777766541  1    1256677788888887765

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK08265 short chain dehydrogenase; Provisional

Probab=89.33  E-value=1.4  Score=40.12  Aligned_cols=38  Identities=29%  Similarity=0.310  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .+.|+++-|.|. |.||+++|+.|+ ..|++|+..+|+..
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~-~~G~~V~~~~r~~~   41 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALV-AAGARVAIVDIDAD   41 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence            477899999997 899999999984 67999999998754

>PRK05866 short chain dehydrogenase; Provisional

Probab=89.32  E-value=1.1  Score=41.72  Aligned_cols=40  Identities=20%  Similarity=0.170  Sum_probs=34.7

Q ss_pred             ccccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       160 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      +..+.|+++.|.|. |.||+++|+.|+ .-|++|+..+|+..
T Consensus        35 ~~~~~~k~vlItGasggIG~~la~~La-~~G~~Vi~~~R~~~   75 (293)
T PRK05866         35 PVDLTGKRILLTGASSGIGEAAAEQFA-RRGATVVAVARRED   75 (293)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            45688999999997 999999999985 67999999999864

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=89.26  E-value=0.82  Score=43.69  Aligned_cols=111  Identities=21%  Similarity=0.222  Sum_probs=61.5

Q ss_pred             CEEEEEec-CHHHHHHHHHHHhcCCc-------EEEEEcCCchhH-HHHH-HhhhhhhhhcCCCCCc--cccccCCHHHH
Q 020301          166 QTVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQATR-LEKF-VTAYGQFLKANGEQPV--TWKRASSMDEV  233 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~~fg~-------~V~~~d~~~~~~-~~~~-~~~~~~~~~~~~~~~~--~~~~~~~l~el  233 (328)
                      ++|+|||. |.+|..+|-.++ .-|.       ++..+|...... .+.. .|-      .+...+.  ...-..+..+.
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~-~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl------~~~~~~~~~~~~i~~~~~~~   75 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIA-SGEMFGPDQPVILQLLELPQALKALEGVAMEL------EDCAFPLLAEIVITDDPNVA   75 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHH-hccccCCCCceEEEEEecCCcccccceeehhh------hhccccccCceEEecCcHHH
Confidence            48999999 999999998764 3333       799999854221 1110 110      0011010  01111355677


Q ss_pred             hhcCCEEEEcCCCC--h-hhhc-cc--cH-------HHHhcCC-CCcEEEEcCCCcccCHHHHHHH
Q 020301          234 LREADVISLHPVLD--K-TTYH-LI--NK-------ERLATMK-KEAILVNCSRGPVIDEVALVEH  285 (328)
Q Consensus       234 l~~aDiV~l~~plt--~-~t~~-li--~~-------~~~~~mk-~ga~lIN~aRG~~vde~aL~~a  285 (328)
                      ++.||+|+++.-..  + +|+. ++  |.       ..+.... |.+++|+++  ..+|.-.-+-.
T Consensus        76 ~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~~  139 (322)
T cd01338          76 FKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALIAM  139 (322)
T ss_pred             hCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHHHH
Confidence            89999999886532  1 1221 11  11       1233334 589999996  66666654443

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.24  E-value=1.2  Score=44.16  Aligned_cols=116  Identities=20%  Similarity=0.234  Sum_probs=67.5

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccC---CHHHHhhcCCEEEEc
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS---SMDEVLREADVISLH  243 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~ell~~aDiV~l~  243 (328)
                      ++.|||+|..|.+.|+.| ...|.+|.++|....+......+    .+++.|..-. .....   .+.+.+.+.|.|+..
T Consensus         2 ~v~viG~G~sG~s~a~~l-~~~G~~V~~~D~~~~~~~~~~~~----~l~~~gi~~~-~g~~~~~~~~~~~~~~~d~vv~s   75 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLL-KAQGWEVVVSDRNDSPELLERQQ----ELEQEGITVK-LGKPLELESFQPWLDQPDLVVVS   75 (459)
T ss_pred             eEEEEccCHHHHHHHHHH-HHCCCEEEEECCCCchhhHHHHH----HHHHcCCEEE-ECCccchhhhhHHhhcCCEEEEC
Confidence            589999999999999987 58899999999875443221100    1122222110 00001   223567889998774


Q ss_pred             CCCChhhh----------ccccHHHH--hcCCC-CcEEEEcCCCcccCHHHHHHHHHc
Q 020301          244 PVLDKTTY----------HLINKERL--ATMKK-EAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       244 ~plt~~t~----------~li~~~~~--~~mk~-ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      -...++..          .++.+-.+  ..+++ ..+-|--+.|..--..-|...|+.
T Consensus        76 ~gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~  133 (459)
T PRK02705         76 PGIPWDHPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA  133 (459)
T ss_pred             CCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            43322211          12333322  33333 355566678988888877788875

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=89.19  E-value=12  Score=38.45  Aligned_cols=178  Identities=16%  Similarity=0.140  Sum_probs=109.8

Q ss_pred             CCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHh-
Q 020301          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE-  186 (328)
Q Consensus       108 ~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~-  186 (328)
                      ..|++.|+--   +.+|-.+++-+|+.+|-.                     |..|...++.|.|.|.-|-.+|+.+.. 
T Consensus       264 ~~i~~FnDDi---QGTaaV~lAgll~Alr~~---------------------g~~l~d~riv~~GAGsAgiGia~ll~~~  319 (559)
T PTZ00317        264 NKYRCFNDDI---QGTGAVIAAGFLNALKLS---------------------GVPPEEQRIVFFGAGSAAIGVANNIADL  319 (559)
T ss_pred             cCCCEecccc---hhHHHHHHHHHHHHHHHh---------------------CCChhhcEEEEECCCHHHHHHHHHHHHH
Confidence            3577777643   346777888888777632                     356889999999999999999998743 


Q ss_pred             --cCCc-------EEEEEcCCch------hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC--CEEEEcCCCChh
Q 020301          187 --GFKM-------NLIYYDLYQA------TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKT  249 (328)
Q Consensus       187 --~fg~-------~V~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiV~l~~plt~~  249 (328)
                        ..|.       +++.+|+.--      ..+..+...|.   +......  .....+|.|+++.+  |+++=+    ..
T Consensus       320 m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa---~~~~~~~--~~~~~~L~e~v~~~KPtvLIG~----S~  390 (559)
T PTZ00317        320 AAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFA---RTDISAE--DSSLKTLEDVVRFVKPTALLGL----SG  390 (559)
T ss_pred             HHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHh---ccccccc--cccCCCHHHHHhccCCCEEEEe----cC
Confidence              2466       8888886520      10222222221   1110000  00135899999999  998643    12


Q ss_pred             hhccccHHHHhcCCC---CcEEEEcCCCcc---cCHHHHHHHHHcCC-ccEEEEeCCCCCCCC-C---CCcccCCCeEEc
Q 020301          250 TYHLINKERLATMKK---EAILVNCSRGPV---IDEVALVEHLKQNP-MFRVGLDVFEDEPYM-K---PGLSEMKNAIVV  318 (328)
Q Consensus       250 t~~li~~~~~~~mk~---ga~lIN~aRG~~---vde~aL~~aL~~g~-i~gaalDV~~~EP~~-~---~~L~~~~nvilT  318 (328)
                      .-+.|.++.++.|.+   ..++.=.|.-.-   ...++.+++= +|+ |.+.|.- |  +|.. +   ..--+..|+++-
T Consensus       391 ~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T-~Grai~AtGsp-f--~pv~~~G~~~~p~Q~NN~~iF  466 (559)
T PTZ00317        391 VGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWT-NGRAIVASGSP-F--PPVTLNGKTIQPSQGNNLYVF  466 (559)
T ss_pred             CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhc-cCCEEEEECCC-C--CCcccCCeeeccCcCcceeec
Confidence            247899999999984   899998888764   3344444442 344 4444321 1  1110 1   123456888988


Q ss_pred             CCCC
Q 020301          319 PHIA  322 (328)
Q Consensus       319 PHia  322 (328)
                      |=++
T Consensus       467 PGig  470 (559)
T PTZ00317        467 PGVG  470 (559)
T ss_pred             cchh
Confidence            8765

>PRK07326 short chain dehydrogenase; Provisional

Probab=89.18  E-value=0.98  Score=40.02  Aligned_cols=37  Identities=24%  Similarity=0.238  Sum_probs=31.8

Q ss_pred             cCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       163 l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      +.++++.|+|. |.||+.+++.|+ ..|.+|++.+|++.
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~-~~g~~V~~~~r~~~   41 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALL-AEGYKVAITARDQK   41 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEeeCCHH
Confidence            46789999985 999999999985 56999999998764

>PRK08374 homoserine dehydrogenase; Provisional

Probab=89.11  E-value=1.4  Score=42.40  Aligned_cols=114  Identities=18%  Similarity=0.313  Sum_probs=57.9

Q ss_pred             CEEEEEecCHHHHHHHHHHHh-------cCC--cEEEEE-cCCch-----h-HHHHHHhhhhhhhhcCCCCCcccc----
Q 020301          166 QTVGVIGAGRIGSAYARMMVE-------GFK--MNLIYY-DLYQA-----T-RLEKFVTAYGQFLKANGEQPVTWK----  225 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~-------~fg--~~V~~~-d~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~----  225 (328)
                      -+|+|+|+|++|+.+++.+.+       .+|  .+|.+. |++..     . ..++.. .+   .+..+.. ..+.    
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~-~~---~~~~~~~-~~~~~~~~   77 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAK-EV---KENFGKL-SNWGNDYE   77 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHH-Hh---hhccCch-hhcccccc
Confidence            479999999999999987643       145  676654 43211     0 000000 00   0011100 0010    


Q ss_pred             -ccCCHHHHh--hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcC
Q 020301          226 -RASSMDEVL--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQN  289 (328)
Q Consensus       226 -~~~~l~ell--~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~v-de~aL~~aL~~g  289 (328)
                       ...++++++  ..+|+|+-+.+  ++...   +-..+.++.|.-+|-..-|.+- ..+.|.++-++.
T Consensus        78 ~~~~~~~ell~~~~~DVvVd~t~--~~~a~---~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~  140 (336)
T PRK08374         78 VYNFSPEEIVEEIDADIVVDVTN--DKNAH---EWHLEALKEGKSVVTSNKPPIAFHYDELLDLANER  140 (336)
T ss_pred             ccCCCHHHHHhcCCCCEEEECCC--cHHHH---HHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHc
Confidence             012678887  47999997775  22221   2222334556666655445432 555666665553

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=89.07  E-value=2.2  Score=40.67  Aligned_cols=95  Identities=19%  Similarity=0.168  Sum_probs=56.4

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC-------HHHHh-
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-------MDEVL-  234 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~ell-  234 (328)
                      .|+++.|.|.|.+|+.+++.+ +.+|+ +|++.+++....  .....+       |..........+       +.++. 
T Consensus       177 ~g~~vlI~g~g~vG~~~~~la-k~~G~~~v~~~~~~~~~~--~~~~~~-------g~~~vi~~~~~~~~~~~~~i~~~~~  246 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAA-KLAGARRVIVIDGSPERL--ELAREF-------GADATIDIDELPDPQRRAIVRDITG  246 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHH--HHHHHc-------CCCeEEcCcccccHHHHHHHHHHhC
Confidence            588999999999999999984 89999 999888765432  111111       211110001011       22222 


Q ss_pred             -hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          235 -READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       235 -~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                       ...|+++-+.....     .....++.++++..+|..+.
T Consensus       247 ~~~~d~vid~~g~~~-----~~~~~~~~l~~~G~~v~~g~  281 (361)
T cd08231         247 GRGADVVIEASGHPA-----AVPEGLELLRRGGTYVLVGS  281 (361)
T ss_pred             CCCCcEEEECCCChH-----HHHHHHHHhccCCEEEEEcC
Confidence             24688887764211     12455677777777777653

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=89.04  E-value=11  Score=38.87  Aligned_cols=176  Identities=20%  Similarity=0.208  Sum_probs=108.7

Q ss_pred             hCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHh
Q 020301          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (328)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~  186 (328)
                      +..|++.|+--   +.+|--+++-+++.+|-.                     +..|...++.|+|.|.-|-.+|+.+..
T Consensus       287 r~~i~~FnDDi---QGTaaV~lAgll~A~r~~---------------------g~~l~d~riv~~GAGsAgigia~ll~~  342 (581)
T PLN03129        287 RTTHLCFNDDI---QGTAAVALAGLLAALRAT---------------------GGDLADQRILFAGAGEAGTGIAELIAL  342 (581)
T ss_pred             ccCCCEecccc---chHHHHHHHHHHHHHHHh---------------------CCchhhceEEEECCCHHHHHHHHHHHH
Confidence            34677777543   346777788888777632                     357889999999999999999998754


Q ss_pred             c----CCc-------EEEEEcCCch-----hH-HHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc--CCEEEEcCCCC
Q 020301          187 G----FKM-------NLIYYDLYQA-----TR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLD  247 (328)
Q Consensus       187 ~----fg~-------~V~~~d~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l~~plt  247 (328)
                      .    .|+       +++.+|+.--     .. ...+...|.   +..       ....+|.|+++.  .|+++=+-   
T Consensus       343 ~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa---~~~-------~~~~~L~e~v~~vkptvLIG~S---  409 (581)
T PLN03129        343 AMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFA---HDH-------EPGASLLEAVKAIKPTVLIGLS---  409 (581)
T ss_pred             HHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHH---hhc-------ccCCCHHHHHhccCCCEEEEec---
Confidence            2    365       7888887521     11 222222221   111       123689999999  89986431   


Q ss_pred             hhhhccccHHHHhcCC---CCcEEEEcCCCcc---cCHHHHHHHHHcCC-ccEEEEeCCCCCCCC--CCCcccCCCeEEc
Q 020301          248 KTTYHLINKERLATMK---KEAILVNCSRGPV---IDEVALVEHLKQNP-MFRVGLDVFEDEPYM--KPGLSEMKNAIVV  318 (328)
Q Consensus       248 ~~t~~li~~~~~~~mk---~ga~lIN~aRG~~---vde~aL~~aL~~g~-i~gaalDV~~~EP~~--~~~L~~~~nvilT  318 (328)
                       ..-+.|+++.++.|.   +..++.=.|.-.-   ...++.+++ .+|+ |.+.|. =|++-...  ...--+..|+++-
T Consensus       410 -~~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~-T~G~ai~AtGS-Pf~pv~~~Gr~~~p~Q~NN~~iF  486 (581)
T PLN03129        410 -GVGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTW-TGGRAIFASGS-PFDPVEYNGKTFHPGQANNAYIF  486 (581)
T ss_pred             -CCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHh-hcCCEEEEeCC-CCCCeeeCCeeecCccccceeec
Confidence             124789999999995   8899998887653   334444444 3355 443321 01000000  0123456788888


Q ss_pred             CCCC
Q 020301          319 PHIA  322 (328)
Q Consensus       319 PHia  322 (328)
                      |=++
T Consensus       487 PGig  490 (581)
T PLN03129        487 PGIG  490 (581)
T ss_pred             cchh
Confidence            8765

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=89.02  E-value=2.1  Score=40.67  Aligned_cols=91  Identities=13%  Similarity=0.180  Sum_probs=53.9

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  240 (328)
                      .|.+|.|+|.|.||...++.+++.+ +.+|++.|+++.+. + .       ++..+..       ...+++..  ..|+|
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~-~-~-------a~~~~~~-------~~~~~~~~~~g~d~v  226 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKL-D-L-------FSFADET-------YLIDDIPEDLAVDHA  226 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHH-H-H-------HhhcCce-------eehhhhhhccCCcEE
Confidence            4889999999999999888753235 46899999875432 1 1       1111110       01122222  37999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      +-++... .+...+ ...++.++++..++.++
T Consensus       227 iD~~G~~-~~~~~~-~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         227 FECVGGR-GSQSAI-NQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             EECCCCC-ccHHHH-HHHHHhCcCCcEEEEEe
Confidence            8877621 011112 34677788888887765

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK06196 oxidoreductase; Provisional

Probab=88.93  E-value=1.3  Score=41.55  Aligned_cols=39  Identities=21%  Similarity=0.195  Sum_probs=33.5

Q ss_pred             cccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       161 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ..+.|+++.|.|. |.||+++|+.|+ .-|++|++.+|+..
T Consensus        22 ~~l~~k~vlITGasggIG~~~a~~L~-~~G~~Vv~~~R~~~   61 (315)
T PRK06196         22 HDLSGKTAIVTGGYSGLGLETTRALA-QAGAHVIVPARRPD   61 (315)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence            3578999999998 789999999985 67999999998754

>PRK06841 short chain dehydrogenase; Provisional

Probab=88.87  E-value=1.9  Score=38.74  Aligned_cols=38  Identities=24%  Similarity=0.286  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ++.|+++.|.|. |.||+.+|+.|+ ..|++|+..+|+..
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l~-~~G~~Vi~~~r~~~   50 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELFA-AKGARVALLDRSED   50 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence            578999999995 999999999985 67999999998754

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.87  E-value=0.66  Score=45.91  Aligned_cols=113  Identities=18%  Similarity=0.110  Sum_probs=65.5

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      +.++++.|+|+|..|++.++.| +..|.+|.++|..........       ++ .|..   ......-.+.++..|+|+.
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l-~~~G~~v~~~D~~~~~~~~~~-------l~-~g~~---~~~~~~~~~~~~~~d~vv~   71 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFF-LARGVTPRVIDTRITPPGLDK-------LP-ENVE---RHTGSLNDEWLLAADLIVA   71 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCCCchhHHH-------Hh-cCCE---EEeCCCCHHHhcCCCEEEE
Confidence            5688999999999999999886 688999999997643211010       11 1211   1010112245667886654


Q ss_pred             cCCCChhhhc-----------cccH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          243 HPVLDKTTYH-----------LINK-ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       243 ~~plt~~t~~-----------li~~-~~~~~-mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      . |.-+.+..           ++.+ +.+.. ++...+-|--+.|..--..-|...|+.
T Consensus        72 s-pgi~~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  129 (438)
T PRK03806         72 S-PGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA  129 (438)
T ss_pred             C-CCCCCCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            4 33322211           2333 33333 333345566677888777778888875

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=88.87  E-value=2.4  Score=46.70  Aligned_cols=94  Identities=27%  Similarity=0.402  Sum_probs=61.1

Q ss_pred             CCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh-----------HHHHH-HhhhhhhhhcCCC
Q 020301          152 GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-----------RLEKF-VTAYGQFLKANGE  219 (328)
Q Consensus       152 ~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~-----------~~~~~-~~~~~~~~~~~~~  219 (328)
                      +|.... .+..-.|++|+|||-|.-|...|..| ...|-.|.+|.|+...           .+.++ ++.--..+..+|.
T Consensus      1773 gwm~p~-pp~~rtg~~vaiigsgpaglaaadql-nk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi 1850 (2142)
T KOG0399|consen 1773 GWMKPC-PPAFRTGKRVAIIGSGPAGLAAADQL-NKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGI 1850 (2142)
T ss_pred             cCCccC-CcccccCcEEEEEccCchhhhHHHHH-hhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCc
Confidence            365432 23456899999999999999999997 6789999999886431           11111 1111112333443


Q ss_pred             CCc---cccccCCHHHHhhcCCEEEEcCCCC
Q 020301          220 QPV---TWKRASSMDEVLREADVISLHPVLD  247 (328)
Q Consensus       220 ~~~---~~~~~~~l~ell~~aDiV~l~~plt  247 (328)
                      .-+   ......++++|.++-|.|+++.-.|
T Consensus      1851 ~f~tn~eigk~vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1851 RFVTNTEIGKHVSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred             eEEeeccccccccHHHHhhccCeEEEEeCCC
Confidence            211   1123468999999999999987655

>PRK12747 short chain dehydrogenase; Provisional

Probab=88.84  E-value=2.2  Score=38.35  Aligned_cols=34  Identities=26%  Similarity=0.197  Sum_probs=28.0

Q ss_pred             cCCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcC
Q 020301          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDL  197 (328)
Q Consensus       163 l~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~  197 (328)
                      +.||++.|.| -|-||+++|+.|+ .-|++|+..++
T Consensus         2 ~~~k~~lItGas~gIG~~ia~~l~-~~G~~v~~~~~   36 (252)
T PRK12747          2 LKGKVALVTGASRGIGRAIAKRLA-NDGALVAIHYG   36 (252)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHH-HCCCeEEEEcC
Confidence            4688999999 4689999999984 78999988653

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=88.78  E-value=1.3  Score=45.04  Aligned_cols=80  Identities=16%  Similarity=0.248  Sum_probs=60.9

Q ss_pred             cccCCCEEEEEecCHH-HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~I-G~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      ..+.|+...++|--.| |..+|..| +-.+..|..+...                            ..++.|.+.++|+
T Consensus       158 v~v~Gk~aVVlGRS~IVG~Pia~LL-~~~NaTVTiCHSK----------------------------T~~lae~v~~ADI  208 (935)
T KOG4230|consen  158 VFVAGKNAVVLGRSKIVGSPIAALL-LWANATVTICHSK----------------------------TRNLAEKVSRADI  208 (935)
T ss_pred             CccccceeEEEecccccCChHHHHH-HhcCceEEEecCC----------------------------CccHHHHhccCCE
Confidence            5689999999998875 88899987 6778899876421                            2478899999999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~  276 (328)
                      |+..+--    .+++-.+   .+|||+++|+++---+
T Consensus       209 vIvAiG~----PefVKgd---WiKpGavVIDvGINyv  238 (935)
T KOG4230|consen  209 VIVAIGQ----PEFVKGD---WIKPGAVVIDVGINYV  238 (935)
T ss_pred             EEEEcCC----cceeecc---cccCCcEEEEcccccc
Confidence            9999763    2333333   4689999999975443

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=88.70  E-value=1.6  Score=39.03  Aligned_cols=38  Identities=18%  Similarity=0.184  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ++.||++.|.|. |.||+.+|+.|+ .-|++|+..+++..
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~-~~G~~vi~~~r~~~   40 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLA-EAGADIVGAGRSEP   40 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCchH
Confidence            378999999997 789999999985 67999999998653

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=88.68  E-value=2.8  Score=40.16  Aligned_cols=96  Identities=14%  Similarity=0.178  Sum_probs=58.0

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-----hcC
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA  237 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~~a  237 (328)
                      .|+++.|.|.|.+|..+++. ++++|. .|++.+++..+.  +....+       +....-.....++.+.+     ...
T Consensus       186 ~g~~vlI~g~g~vG~~~~~l-a~~~G~~~v~~~~~~~~k~--~~~~~~-------g~~~~i~~~~~~~~~~v~~~~~~~~  255 (365)
T cd08278         186 PGSSIAVFGAGAVGLAAVMA-AKIAGCTTIIAVDIVDSRL--ELAKEL-------GATHVINPKEEDLVAAIREITGGGV  255 (365)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEeCCHHHH--HHHHHc-------CCcEEecCCCcCHHHHHHHHhCCCC
Confidence            57899999999999999998 589999 588888765432  111111       21111000111232222     347


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      |+++-++...+     .-...++.++++..+|.++..
T Consensus       256 d~vld~~g~~~-----~~~~~~~~l~~~G~~v~~g~~  287 (365)
T cd08278         256 DYALDTTGVPA-----VIEQAVDALAPRGTLALVGAP  287 (365)
T ss_pred             cEEEECCCCcH-----HHHHHHHHhccCCEEEEeCcC
Confidence            88887765211     124567778888888887643

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=88.65  E-value=2.1  Score=38.92  Aligned_cols=93  Identities=19%  Similarity=0.161  Sum_probs=57.3

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH--hhcCCEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV--LREADVI  240 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el--l~~aDiV  240 (328)
                      .|.++.|.|.|.+|+.+++.+ +.+|++ |++.+++.....  ....+       |.. .....  ..++.  -...|++
T Consensus        97 ~g~~vlI~g~g~vg~~~i~~a-~~~g~~~vi~~~~~~~~~~--~~~~~-------g~~-~~~~~--~~~~~~~~~~~d~v  163 (277)
T cd08255          97 LGERVAVVGLGLVGLLAAQLA-KAAGAREVVGVDPDAARRE--LAEAL-------GPA-DPVAA--DTADEIGGRGADVV  163 (277)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCcEEEECCCHHHHH--HHHHc-------CCC-ccccc--cchhhhcCCCCCEE
Confidence            578999999999999999984 899999 988887654321  21222       100 00000  00111  1247888


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      +.++....     .-...++.++++..+++++-.
T Consensus       164 l~~~~~~~-----~~~~~~~~l~~~g~~~~~g~~  192 (277)
T cd08255         164 IEASGSPS-----ALETALRLLRDRGRVVLVGWY  192 (277)
T ss_pred             EEccCChH-----HHHHHHHHhcCCcEEEEEecc
Confidence            87765321     225567788888888887643

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=88.62  E-value=2.3  Score=40.06  Aligned_cols=107  Identities=18%  Similarity=0.191  Sum_probs=59.3

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--H-------HHH-----HhhhhhhhhcCC-CCCc--cccccC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-------EKF-----VTAYGQFLKANG-EQPV--TWKRAS  228 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~-------~~~-----~~~~~~~~~~~~-~~~~--~~~~~~  228 (328)
                      +|.|||.|.+|.++++.|+ ..|. ++...|...-+.  +       ++.     .+.-.+.+.+-. ....  ......
T Consensus         1 kVlVVGaGGlG~eilknLa-l~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~   79 (291)
T cd01488           1 KILVIGAGGLGCELLKNLA-LSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ   79 (291)
T ss_pred             CEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence            4899999999999999985 4554 677887542110  0       000     000000000000 0000  001111


Q ss_pred             C-HHHHhhcCCEEEEcCCCChhhhccccHHHHhcC-----CCCcEEEEcCCCc
Q 020301          229 S-MDEVLREADVISLHPVLDKTTYHLINKERLATM-----KKEAILVNCSRGP  275 (328)
Q Consensus       229 ~-l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m-----k~ga~lIN~aRG~  275 (328)
                      + -++.+++.|+|+.++- +.+++..+|+...+..     +.+.-+|..+-.+
T Consensus        80 ~~~~~f~~~fdvVi~alD-n~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G  131 (291)
T cd01488          80 DKDEEFYRQFNIIICGLD-SIEARRWINGTLVSLLLYEDPESIIPLIDGGTEG  131 (291)
T ss_pred             chhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhccccccccCccEEEEEEcc
Confidence            2 2578899999999876 5678888888766554     2345577765433

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=88.61  E-value=1.4  Score=46.14  Aligned_cols=36  Identities=28%  Similarity=0.384  Sum_probs=32.1

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      -.|++|.|||.|..|...|..| ...|.+|++|++..
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L-~~~G~~V~V~E~~~  360 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVL-ARNGVAVTVYDRHP  360 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEecCC
Confidence            4799999999999999999997 57899999998753

>PRK07904 short chain dehydrogenase; Provisional

Probab=88.55  E-value=2.1  Score=38.84  Aligned_cols=38  Identities=18%  Similarity=0.255  Sum_probs=29.8

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      +++++.|.|. |.||+.+|+.+++.-|++|+..+|+...
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~   45 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDP   45 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcch
Confidence            5678888885 7899999999753335999999987654

>PRK14851 hypothetical protein; Provisional

Probab=88.50  E-value=0.78  Score=48.24  Aligned_cols=37  Identities=22%  Similarity=0.255  Sum_probs=30.0

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCC
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~  198 (328)
                      ..|.+++|+|+|+|-+|..+|..|+ ..|. ++..+|..
T Consensus        39 ~kL~~~~VlIvG~GGlGs~va~~La-r~GVG~l~LvD~D   76 (679)
T PRK14851         39 ERLAEAKVAIPGMGGVGGVHLITMV-RTGIGRFHIADFD   76 (679)
T ss_pred             HHHhcCeEEEECcCHHHHHHHHHHH-HhCCCeEEEEcCC
Confidence            4689999999999999999999975 5554 56667643

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=88.42  E-value=4  Score=38.38  Aligned_cols=106  Identities=16%  Similarity=0.105  Sum_probs=60.1

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHH--H-------H-----HHhhhhhhhhcCC-CCCccc
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRL--E-------K-----FVTAYGQFLKANG-EQPVTW  224 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~--~-------~-----~~~~~~~~~~~~~-~~~~~~  224 (328)
                      ..|..++|.|+|+|.+|.++|+.|+ ..|. ++..+|...-...  .       +     ..+.-.+.+++-. ......
T Consensus        15 ~kL~~s~VLIvG~gGLG~EiaKnLa-laGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~   93 (286)
T cd01491          15 KKLQKSNVLISGLGGLGVEIAKNLI-LAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTV   93 (286)
T ss_pred             HHHhcCcEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEE
Confidence            4689999999999999999999985 5676 5888887642110  0       0     0000000000000 001111


Q ss_pred             cccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301          225 KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       225 ~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~  271 (328)
                      ....-.++.+.+.|+|+++.. +.+++..+|+..-+   .+.-+|..
T Consensus        94 ~~~~~~~~~l~~fdvVV~~~~-~~~~~~~in~~c~~---~~ipfI~a  136 (286)
T cd01491          94 STGPLTTDELLKFQVVVLTDA-SLEDQLKINEFCHS---PGIKFISA  136 (286)
T ss_pred             EeccCCHHHHhcCCEEEEecC-CHHHHHHHHHHHHH---cCCEEEEE
Confidence            111123577889998877754 66777777776654   33344444

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=88.41  E-value=0.63  Score=44.99  Aligned_cols=34  Identities=24%  Similarity=0.401  Sum_probs=30.4

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      +|||||-|..|+.+++.+ +.+|.+|+++|+++..
T Consensus         1 kililG~g~~~~~l~~aa-~~~G~~v~~~d~~~~~   34 (380)
T TIGR01142         1 RVLLLGSGELGKEVAIEA-QRLGVEVIAVDRYANA   34 (380)
T ss_pred             CEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCCC
Confidence            589999999999999995 7899999999987643

This enzyme is an alternative to PurN (TIGR00639)

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=88.34  E-value=3.4  Score=37.53  Aligned_cols=37  Identities=24%  Similarity=0.216  Sum_probs=32.1

Q ss_pred             ccCCCEEEEEecC---HHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       162 ~l~g~tvgIiG~G---~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      .+.||++.|.|.+   .||+++|+.|+ .-|++|+..+++.
T Consensus         7 ~~~~k~~lItGas~g~GIG~a~a~~la-~~G~~v~l~~r~~   46 (258)
T PRK07533          7 PLAGKRGLVVGIANEQSIAWGCARAFR-ALGAELAVTYLND   46 (258)
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHH-HcCCEEEEEeCCh
Confidence            5789999999986   69999999985 6799999888764

>PLN02427 UDP-apiose/xylose synthase

Probab=88.31  E-value=1  Score=43.61  Aligned_cols=40  Identities=30%  Similarity=0.471  Sum_probs=32.9

Q ss_pred             ccccCCCEEEEEec-CHHHHHHHHHHHhcC-CcEEEEEcCCch
Q 020301          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGF-KMNLIYYDLYQA  200 (328)
Q Consensus       160 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~f-g~~V~~~d~~~~  200 (328)
                      |..+..++|.|.|. |-||+.+++.|. .- |.+|++.|++..
T Consensus         9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~-~~~g~~V~~l~r~~~   50 (386)
T PLN02427          9 GKPIKPLTICMIGAGGFIGSHLCEKLM-TETPHKVLALDVYND   50 (386)
T ss_pred             CCcccCcEEEEECCcchHHHHHHHHHH-hcCCCEEEEEecCch
Confidence            56677889999995 999999999985 44 589999997643

>PLN02827 Alcohol dehydrogenase-like

Probab=88.10  E-value=2.8  Score=40.60  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=30.5

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCch
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA  200 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~  200 (328)
                      .|.++.|.|.|.+|..+++.+ +.+|++ |++.+++..
T Consensus       193 ~g~~VlV~G~G~vG~~~iqla-k~~G~~~vi~~~~~~~  229 (378)
T PLN02827        193 KGSSVVIFGLGTVGLSVAQGA-KLRGASQIIGVDINPE  229 (378)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHH
Confidence            589999999999999999984 899984 878876654

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.05  E-value=0.9  Score=40.52  Aligned_cols=37  Identities=27%  Similarity=0.363  Sum_probs=32.9

Q ss_pred             cCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       163 l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      +.|+++.|+|. |.||+.+|+.+ ...|.+|+..+++..
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l-~~~G~~vi~~~r~~~   40 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYL-AQKGAKLALIDLNQE   40 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            67999999998 99999999997 467999999998764

>PRK07825 short chain dehydrogenase; Provisional

Probab=88.05  E-value=2  Score=39.15  Aligned_cols=38  Identities=32%  Similarity=0.421  Sum_probs=32.4

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ++.|+++.|.|. |.||+.+|+.|+ ..|++|+..+|+..
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l~-~~G~~v~~~~r~~~   40 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARALA-ALGARVAIGDLDEA   40 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            367899999997 889999999985 67999999988754

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=88.03  E-value=1.3  Score=42.35  Aligned_cols=107  Identities=21%  Similarity=0.225  Sum_probs=58.6

Q ss_pred             EEEEEec-CHHHHHHHHHHHhcCC-------cEEEEEcCCchhH-HHHHHhhhhhhhhcCC-CCCccccccCCHHHHhhc
Q 020301          167 TVGVIGA-GRIGSAYARMMVEGFK-------MNLIYYDLYQATR-LEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLRE  236 (328)
Q Consensus       167 tvgIiG~-G~IG~~vA~~l~~~fg-------~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~  236 (328)
                      +|+|+|. |.+|+.+|..|. ..+       .+|..+|+..... .+...-.+    .+.. ..........++.+.++.
T Consensus         4 kV~I~GAaG~VG~~la~~L~-~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl----~d~~~~~~~~~~~~~~~~~~l~~   78 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIA-KGDVFGPDQPVILHLLDIPPALKALEGVVMEL----QDCAFPLLKSVVATTDPEEAFKD   78 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHH-hCcccCCCCCcEEEEEEcCCccccccceeeeh----hhccccccCCceecCCHHHHhCC
Confidence            6999999 999999999874 322       4899999854321 11100000    0000 000011113567788999


Q ss_pred             CCEEEEcCCCCh---hhh-ccc--cH-------HHHhcC-CCCcEEEEcCCCcccCHH
Q 020301          237 ADVISLHPVLDK---TTY-HLI--NK-------ERLATM-KKEAILVNCSRGPVIDEV  280 (328)
Q Consensus       237 aDiV~l~~plt~---~t~-~li--~~-------~~~~~m-k~ga~lIN~aRG~~vde~  280 (328)
                      ||+|+.+.-...   +|+ .++  |.       ..+... +|++++|.++  ..+|.-
T Consensus        79 aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~  134 (325)
T cd01336          79 VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG--NPANTN  134 (325)
T ss_pred             CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec--CcHHHH
Confidence            999987754321   121 111  21       233444 5789999887  345443

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.01  E-value=2.8  Score=36.60  Aligned_cols=39  Identities=28%  Similarity=0.266  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .|.|+.+.+-|.|. ||+++.+.|+ .-|++|+++.|.+..
T Consensus         4 ~laG~~vlvTgagaGIG~~~v~~La-~aGA~ViAvaR~~a~   43 (245)
T KOG1207|consen    4 SLAGVIVLVTGAGAGIGKEIVLSLA-KAGAQVIAVARNEAN   43 (245)
T ss_pred             cccceEEEeecccccccHHHHHHHH-hcCCEEEEEecCHHH
Confidence            58899999999885 9999999984 779999999998754

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=87.98  E-value=2.9  Score=39.03  Aligned_cols=94  Identities=19%  Similarity=0.181  Sum_probs=55.8

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHH---Hh--hcCC
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE---VL--READ  238 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e---ll--~~aD  238 (328)
                      .|.++.|.|.|.+|+.+++.+ +.+|.+|++.+++....  +....+       +....-.....+..+   ..  ...|
T Consensus       165 ~~~~vli~g~g~vG~~~~~la-~~~G~~V~~~~~s~~~~--~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~D  234 (338)
T cd08254         165 PGETVLVIGLGGLGLNAVQIA-KAMGAAVIAVDIKEEKL--ELAKEL-------GADEVLNSLDDSPKDKKAAGLGGGFD  234 (338)
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHcCCEEEEEcCCHHHH--HHHHHh-------CCCEEEcCCCcCHHHHHHHhcCCCce
Confidence            457899999999999999984 79999999988875432  111111       211110011112222   11  3468


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      +++.++.. +.    .-++.+..++++..+|..+
T Consensus       235 ~vid~~g~-~~----~~~~~~~~l~~~G~~v~~g  263 (338)
T cd08254         235 VIFDFVGT-QP----TFEDAQKAVKPGGRIVVVG  263 (338)
T ss_pred             EEEECCCC-HH----HHHHHHHHhhcCCEEEEEC
Confidence            88776542 11    2345667788888888775

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=87.97  E-value=1  Score=43.33  Aligned_cols=36  Identities=31%  Similarity=0.511  Sum_probs=27.3

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQAT  201 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~-~d~~~~~  201 (328)
                      .++||+|+|+||+..++.+.+.-+.++.+ +|+....
T Consensus         6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~   42 (338)
T PLN02358          6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITT   42 (338)
T ss_pred             eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCH
Confidence            48999999999999999864334678776 5665444

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=87.97  E-value=2  Score=43.13  Aligned_cols=85  Identities=22%  Similarity=0.274  Sum_probs=52.3

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh------------HHHHHHhhhhhhhhcCCCCCc---ccccc
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT------------RLEKFVTAYGQFLKANGEQPV---TWKRA  227 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~---~~~~~  227 (328)
                      -.|+++.|||.|.+|...|..| +..|.+|..|++.+..            ...+..+...+++++.|..-.   .....
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l-~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  217 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADIL-ARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD  217 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHH-HHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc
Confidence            4789999999999999999997 5789999999875421            000111111122333342211   00111


Q ss_pred             CCHHHHhhcCCEEEEcCCCCh
Q 020301          228 SSMDEVLREADVISLHPVLDK  248 (328)
Q Consensus       228 ~~l~ell~~aDiV~l~~plt~  248 (328)
                      ..++++...+|.|+++.-..+
T Consensus       218 ~~~~~~~~~~D~vilAtGa~~  238 (467)
T TIGR01318       218 ISLDDLLEDYDAVFLGVGTYR  238 (467)
T ss_pred             cCHHHHHhcCCEEEEEeCCCC
Confidence            255666678999999887654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed

Probab=87.94  E-value=9.2  Score=34.06  Aligned_cols=148  Identities=19%  Similarity=0.066  Sum_probs=78.1

Q ss_pred             CeEEEEeCCCCc-hHHHHHHHhCCCeEEEecCCCC-C--CCH-HHHHHHhcCCccEEEecCCCCccHHHHHHhhcc---C
Q 020301           15 KYRVVSTKPMPG-TRWINLLIEQDCRVEICTQKKT-I--LSV-EDIIALIGDKCDGVIGQLTEDWGETLFAALSRA---G   86 (328)
Q Consensus        15 ~~~vlv~~~~~~-~~~~~~l~~~~~~~~~~~~~~~-~--~~~-e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l---~   86 (328)
                      +|+|+++.+-+. ..+.+.|++.|+++...+.-+. +  .+. ......+. .+|.++..+..-+ +.+++.+.+.   .
T Consensus         1 ~~~ilitr~~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~-~~d~iiftS~~av-~~~~~~~~~~~~~~   78 (249)
T PRK05928          1 MMKILVTRPSPKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAAL-GADWVIFTSKNAV-EFLLSALKKKKLKW   78 (249)
T ss_pred             CCEEEEeCCHHHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCC-CCCEEEEECHHHH-HHHHHHHHhcCcCC
Confidence            389999998654 3466788999988755432111 1  111 12223343 6898887653222 2233333200   0


Q ss_pred             CceEEEccccCCccChhHHHhCCceEecCCCC-CCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCC
Q 020301           87 GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV-LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG  165 (328)
Q Consensus        87 ~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~-~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g  165 (328)
                      ++-.....+|-.  --++++++|+.+...|.. +....++.    +.                           ...+.|
T Consensus        79 ~~~~~~~avG~~--Ta~~l~~~G~~~~~~~~~~~~~~l~~~----l~---------------------------~~~~~~  125 (249)
T PRK05928         79 PKNKKYAAIGEK--TALALKKLGGKVVFVPEDGESSELLLE----LP---------------------------ELLLKG  125 (249)
T ss_pred             CCCCEEEEECHH--HHHHHHHcCCCccccCCCCcChHHHHh----Ch---------------------------hhhcCC
Confidence            111122233321  134566788876554432 22222111    00                           011568


Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~  198 (328)
                      +++.|+....-...+++.| ...|.+|..+..+
T Consensus       126 ~~ili~~~~~~~~~l~~~L-~~~G~~v~~~~~Y  157 (249)
T PRK05928        126 KRVLYLRGNGGREVLGDTL-EERGAEVDECEVY  157 (249)
T ss_pred             CEEEEECCCCCHHHHHHHH-HHCCCEEeEEEEE
Confidence            8899998888777899987 6788877654433

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=87.89  E-value=2.4  Score=40.90  Aligned_cols=33  Identities=15%  Similarity=0.390  Sum_probs=25.7

Q ss_pred             CEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCC
Q 020301          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY  198 (328)
Q Consensus       166 ~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~  198 (328)
                      .+|+|+| .|.+|+++++.|...-.+++.++..+
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s   37 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAAS   37 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcC
Confidence            5899998 89999999999753335688877433

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=87.89  E-value=1.6  Score=46.87  Aligned_cols=111  Identities=24%  Similarity=0.305  Sum_probs=68.2

Q ss_pred             CEEEEEecCHHHHHH-HHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAY-ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~v-A~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      +++.|+|+|.+|.+. |+.| +..|.+|.++|....+..++        ++..|..-   .. ..-.+.+..+|+|+..-
T Consensus         5 ~~i~viG~G~sG~salA~~L-~~~G~~V~~sD~~~~~~~~~--------L~~~gi~~---~~-g~~~~~~~~~d~vV~Sp   71 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHIL-LDRGYSVSGSDLSEGKTVEK--------LKAKGARF---FL-GHQEEHVPEDAVVVYSS   71 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHH-HHCCCeEEEECCCCChHHHH--------HHHCCCEE---eC-CCCHHHcCCCCEEEECC
Confidence            369999999999998 9987 68999999999765432221        11222211   00 11235667899997653


Q ss_pred             CCChhhh----------ccccHHHH-hc-CCC-CcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          245 VLDKTTY----------HLINKERL-AT-MKK-EAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       245 plt~~t~----------~li~~~~~-~~-mk~-ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      .-.+++.          .++++-.| .. ++. ..+-|--+.|..=-..-+...|++.
T Consensus        72 gI~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~  129 (809)
T PRK14573         72 SISKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEA  129 (809)
T ss_pred             CcCCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence            2222211          23444333 23 332 3566666789988888888888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	328
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		7e-36
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		4e-34
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		5e-30
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		6e-29
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		9e-27
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		2e-25
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		8e-24
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		1e-23
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		2e-23
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		3e-23
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		5e-23
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		5e-23
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		6e-23
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		7e-23
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		8e-23
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		9e-23
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		1e-22
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		1e-22
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		1e-22
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		3e-22
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		3e-22
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		3e-22
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		3e-22
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		4e-22
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		1e-21
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		4e-21
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		5e-21
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		5e-21
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		6e-21
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		2e-20
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		2e-20
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		3e-19
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		3e-19
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		7e-19
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		1e-16
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		1e-16
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		5e-16
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		9e-16
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		2e-15
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		3e-14
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		4e-14
2o4c_A	380	Crystal Structure Of D-erythronate-4-phosphate Dehy		6e-13
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		4e-12
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		7e-12
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		3e-11
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		3e-11
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		3e-11
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		4e-11
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		1e-09
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		1e-09
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		3e-08
1qp8_A	303	Crystal Structure Of A Putative Formate Dehydrogena		3e-08
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		3e-08
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		4e-08
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		2e-07
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		8e-07
3gvx_A	290	Crystal Structure Of Glycerate Dehydrogenase Relate		6e-04

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score =  147 bits (371), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 160/297 (53%), Gaps = 25/297 (8%)
Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
           ++E +  VE+   +K I    +I+     + D ++  L+E   + +F    +   +  +N
Sbjct: 18  MLEDEFEVEVWGDEKEIPR--EILLKKVKEVDALVTMLSERIDKEVFENAPKL--RIVAN 73
Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD- 151
            AVGY+N+D+  A K GI V NTP V                 R +V+ D F+R+G +  
Sbjct: 74  YAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKK 133
Query: 152 ---GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
               W P  F+G  + G+T+G+IG GRIG A A+   +GF M ++YY   +   +E+ + 
Sbjct: 134 RGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR-AKGFNMRILYYSRTRKEEVERELN 192
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
           A  +F                ++++LRE+D + L   L + TYHLIN+ERL  MKK AIL
Sbjct: 193 A--EF--------------KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAIL 236
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
           +N +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L ++ N ++ PHI SAS
Sbjct: 237 INIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSAS 293

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score =  141 bits (356), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/296 (34%), Positives = 157/296 (53%), Gaps = 25/296 (8%)
Query: 34  IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93
           +E +  VE+   +K I    +I+     + D ++  L+E   + +F    +   +  +N 
Sbjct: 19  LEDEFEVEVWGDEKEIPR--EILLKKVKEVDALVTXLSERIDKEVFENAPKL--RIVANY 74
Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-- 151
           AVGY+N+D+  A K GI V NTP V                 R +V+ D F+R+G +   
Sbjct: 75  AVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKR 134
Query: 152 --GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
              W P  F+G  + G+T+G+IG GRIG A A+   +GF   ++YY   +   +E+ + A
Sbjct: 135 GVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR-AKGFNXRILYYSRTRKEEVERELNA 193
Query: 210 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 269
             +F                ++++LRE+D + L   L + TYHLIN+ERL   KK AIL+
Sbjct: 194 --EF--------------KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILI 237
Query: 270 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
           N +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L ++ N ++ PHI SAS
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSAS 293

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score =  128 bits (321), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 166/313 (53%), Gaps = 34/313 (10%)
Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           RV+ T+ +PG + ++ L E+   VE+   +   L   +++     + +G +G +      
Sbjct: 2   RVLVTRTLPG-KALDRLRERGLEVEV--HRGLFLPKAELL----KRVEGAVGLIPTVEDR 54
Query: 77  TLFAALSRAGG-KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXX 135
                + RA G K  +  +VG ++VD+ AA + GI V +TPGV                 
Sbjct: 55  IDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVA 114
Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           RR+VE   + R GL+  W P L +G  L+G T+G++G GRIG A A+  +  F M ++Y+
Sbjct: 115 RRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRAL-AFGMRVVYH 173
Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255
                               A   +P+ +    S++E+L+EADV+SLH  L   T+ L+N
Sbjct: 174 --------------------ARTPKPLPYP-FLSLEELLKEADVVSLHTPLTPETHRLLN 212
Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMK 313
           +ERL  MK+ AIL+N +RG ++D  ALVE L+ + +F  GLDV + EP + PG  L  + 
Sbjct: 213 RERLFAMKRGAILLNTARGALVDTEALVEALRGH-LFGAGLDVTDPEP-LPPGHPLYALP 270
Query: 314 NAIVVPHIASASK 326
           NA++ PHI SA +
Sbjct: 271 NAVITPHIGSAGR 283

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score =  124 bits (312), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 130/239 (54%), Gaps = 21/239 (8%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   VG +N+DV AA + GI V N P                   R+I  AD  MR 
Sbjct: 68  KVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMRE 127
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G+   W     +G  L+G+T+G+IG GRIG   A++      MN++ YD Y      K V
Sbjct: 128 GV---WAKKEAMGIELEGKTIGIIGFGRIGYQVAKI-ANALGMNILLYDPYPNEERAKEV 183
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
              G+F+               ++ +L+E+DV+++H  L ++TYHLIN+ERL  MKK AI
Sbjct: 184 N--GKFV--------------DLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAI 227
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASAS 325
           L+N SRGPV+D  ALV+ LK+  +   GLDVFE+EP  K   L++  N ++ PHI +++
Sbjct: 228 LINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGAST 286

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score =  117 bits (293), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 120/241 (49%), Gaps = 17/241 (7%)
Query: 86  GGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFM 145
           G K  + ++VGY+++D  AA   GI V +TP V                 RR  EAD  +
Sbjct: 94  GLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRRGYEADRXV 153
Query: 146 RAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK 205
           R+G + GW P   +G  L G+ +G+ G GRIG A A     GF + + Y++    TRL  
Sbjct: 154 RSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIA-TRARGFGLAIHYHN---RTRLSH 209
Query: 206 FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKE 265
            +           E+   +    ++D +L  +D+  +           ++ +R+A + + 
Sbjct: 210 AL-----------EEGAIYH--DTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEG 256
Query: 266 AILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
           A+++N SRG +I++ AL+E L+   +F  GLDVF +EP + P    + N  + PHI SA+
Sbjct: 257 AVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSAT 316
Query: 326 K 326
Sbjct: 317 H 317

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 133/291 (45%), Gaps = 29/291 (9%)
Query: 36  QDCRVEICTQKKTILSVEDIIALIGDKC-DGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94
            D ++ I    +T  SV+ ++  + +KC   VI ++ E+              K  S  +
Sbjct: 29  DDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENI-------------KCISTYS 75
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G++++D++A    GI VGN P                   RR  E ++ +R   + GW 
Sbjct: 76  IGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWE 135
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
           P   VG  L  +T+G+ G G IG A A+   +GF M++ Y+D ++A+             
Sbjct: 136 PLELVGEKLDNKTLGIYGFGSIGQALAKR-AQGFDMDIDYFDTHRAS------------- 181
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
            ++ E         S+D +L  +   SL+      T +  NK  + ++ + AI+VN +RG
Sbjct: 182 -SSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG 240
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
            ++D   +V  L+   +   G DVF  EP +  G  ++ N  + PHI SA+
Sbjct: 241 DLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAA 291

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score =  107 bits (268), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 113/240 (47%), Gaps = 21/240 (8%)
Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXX 122
            DGV+     D+      AL+ AG    S   VG +N+D++ A + G  + N P      
Sbjct: 47  ADGVVVYQQLDYTADTLQALADAGVTKMSLRNVGVDNIDMDKAKELGFQITNVPVYSPNA 106
Query: 123 XXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
                        R+    DE M A     W P   +G  ++ Q VGV+G G IG  + R
Sbjct: 107 IAEHAAIQAARVLRQDKRMDEKM-AKRDLRWAPT--IGREVRDQVVGVVGTGHIGQVFMR 163
Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
           +M EGF   +I YD+++   LEK     G ++              S+D++ ++ADVISL
Sbjct: 164 IM-EGFGAKVIAYDIFKNPELEK----KGYYV-------------DSLDDLYKQADVISL 205
Query: 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
           H        H+IN + +A MK   ++VNCSRG ++D  A++  L    +F   +D +EDE
Sbjct: 206 HVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVMDTYEDE 265

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 144/320 (45%), Gaps = 45/320 (14%)
Query: 23  PMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTEDWGE 76
           PM     + LL  +DC VE+      IL     +A     CD    Q      L E  G 
Sbjct: 20  PMHPRPLVALLDGRDCTVEM-----PILKDVATVAF----CDAQSTQEIHEKVLNEAVGA 70
Query: 77  TLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
            ++    L+R   + F  + +      G++N+D+ +A   GIAV N P            
Sbjct: 71  LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTL 130
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYARMM 184
                  RR     + +R G     +  +         ++G+T+G+IG GR+G A A + 
Sbjct: 131 CHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVA-LR 189
Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
            + F  N+++YD Y +  +E+   A G             +R S++ ++L  +D ++LH 
Sbjct: 190 AKAFGFNVLFYDPYLSDGIER---ALG------------LQRVSTLQDLLFHSDCVTLHC 234
Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP- 303
            L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E EP 
Sbjct: 235 GLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPF 294
Query: 304 -YMKPGLSEMKNAIVVPHIA 322
            + +  L +  N I  PH A
Sbjct: 295 SFSQGPLKDAPNLICTPHAA 314

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 112/233 (48%), Gaps = 22/233 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N+D+ +A   GIAV N P                   RR     + +R G     + 
Sbjct: 95  GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVE 154
Query: 156 NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
            +         ++G+T+G+IG GR+G A A +  + F  N+++YD Y             
Sbjct: 155 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPY------------- 200
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
             L    E+ +  +R S++ ++L  +D ++LH  L++  +HLIN   +  M++ A LVN 
Sbjct: 201 --LSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 258
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIA 322
           +RG ++DE AL + LK+  +    LDV E EP  + +  L +  N I  PH A
Sbjct: 259 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAA 311

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 114/233 (48%), Gaps = 22/233 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N+D+ +A   GIAV N P                   RR     + +R G     + 
Sbjct: 98  GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVE 157
Query: 156 NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
            +         ++G+T+G+IG GR+G A A +  + F  N+++YD Y +  +E+   A G
Sbjct: 158 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPYLSDGIER---ALG 213
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
                        +R S++ ++L  +D ++LH  L++  +HLIN   +  M++ A LVN 
Sbjct: 214 ------------LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 261
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIA 322
           +RG ++DE AL + LK+  +    LDV E EP  + +  L +  N I  PH A
Sbjct: 262 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAA 314

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 144/323 (44%), Gaps = 48/323 (14%)
Query: 20  STKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTED 73
           S  P P    + LL  +DC VE+      IL     +A     CD    Q      L E 
Sbjct: 1   SMHPRP---LVALLDGRDCTVEM-----PILKDLATVAF----CDAQSTQEIHEKVLNEA 48
Query: 74  WGETLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXX 125
            G  ++    L+R   + F  + V      GY+NVD+ AA + GIAV N P         
Sbjct: 49  VGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETAD 108
Query: 126 XXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYA 181
                     RR     + +R G     +  +         ++G+T+G+IG GR G A A
Sbjct: 109 STICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVA 168
Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
            +  + F  ++I+YD Y               L+   E+ +  +R  ++ ++L ++D +S
Sbjct: 169 -VRAKAFGFSVIFYDPY---------------LQDGIERSLGVQRVYTLQDLLYQSDCVS 212
Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           LH  L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E 
Sbjct: 213 LHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHES 272
Query: 302 EP--YMKPGLSEMKNAIVVPHIA 322
           EP  + +  L +  N I  PH A
Sbjct: 273 EPFSFAQGPLKDAPNLICTPHTA 295

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 128/281 (45%), Gaps = 23/281 (8%)
Query: 46  KKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAA 105
           +K  LS E++IA + D C+G+I +        +  A  +   +       G +NVD+ AA
Sbjct: 52  EKQNLSKEELIAELQD-CEGLIVRSATKVTADVINAAEKL--QVVGRAGTGVDNVDLEAA 108
Query: 106 NKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKG 165
            + GI V NTP                   R+I +A   M+ G    W    F+G  L G
Sbjct: 109 TRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDG---KWERKKFMGTELNG 165
Query: 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
           +T+G++G GRIG   A  M + F M  I YD   +  +     ++G              
Sbjct: 166 KTLGILGLGRIGREVATRM-QSFGMKTIGYDPIISPEVS---ASFG-------------V 208
Query: 226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEH 285
           +   ++E+    D I++H  L  +T  L+N    A  KK   +VNC+RG ++DE AL+  
Sbjct: 209 QQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRA 268
Query: 286 LKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK 326
           L+        LDVF +EP     L + +N I  PH+ +++K
Sbjct: 269 LQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTK 309

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 124/268 (46%), Gaps = 24/268 (8%)
Query: 36  QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95
           +D   ++  +    L   + +AL     DGV+     D+      AL+  G    S   V
Sbjct: 21  EDAHKDVEVEYTDKLLTPETVAL-AKGADGVVVYQQLDYIAETLQALADNGITKMSLRNV 79
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-GWL 154
           G +N+D+  A + G  + N P                   R+    DE  +   +D  W 
Sbjct: 80  GVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDE--KVARHDLRWA 137
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
           P   +G  ++ Q VGV+G G IG  + ++M EGF   +I YD+++   LEK     G ++
Sbjct: 138 PT--IGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRNPELEK----KGYYV 190
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                         S+D++ ++ADVISLH        H+IN E +A MK++ ++VN SRG
Sbjct: 191 -------------DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRG 237
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDE 302
           P++D  A++  L    +F   +DV+E E
Sbjct: 238 PLVDTDAVIRGLDSGKIFGYAMDVYEGE 265

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score =  104 bits (260), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 124/268 (46%), Gaps = 24/268 (8%)
Query: 36  QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95
           +D   ++  +    L   + +AL     DGV+     D+      AL+  G    S   V
Sbjct: 21  EDAHKDVEVEYTDKLLTPETVAL-AKGADGVVVYQQLDYIAETLQALADNGITKMSLRNV 79
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-GWL 154
           G +N+D+  A + G  + N P                   R+    DE  +   +D  W 
Sbjct: 80  GVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDE--KVARHDLRWA 137
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
           P   +G  ++ Q VGV+G G IG  + ++M EGF   +I YD+++   LEK     G ++
Sbjct: 138 PT--IGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRNPELEK----KGYYV 190
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                         S+D++ ++ADVISLH        H+IN E +A MK++ ++VN SRG
Sbjct: 191 -------------DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRG 237
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDE 302
           P++D  A++  L    +F   +DV+E E
Sbjct: 238 PLVDTDAVIRGLDSGKIFGYAMDVYEGE 265

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score =  104 bits (259), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 110/245 (44%), Gaps = 34/245 (13%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   VG +NVDV+AA   G+ V N P                   R+I  AD  +R 
Sbjct: 67  KIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR- 125
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
                W  + F G  + G+TVGV+G GRIG   A+  +  F   ++ YD Y         
Sbjct: 126 --EHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQR-IAAFGAYVVAYDPY--------- 173
Query: 208 TAYGQFLKANGEQPVTWKRAS-------SMDEVLREADVISLHPVLDKTTYHLINKERLA 260
                         V+  RA+       S+D++L  AD IS+H      T  LI+KE LA
Sbjct: 174 --------------VSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALA 219
Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 320
             K   I+VN +RG ++DE AL + +    +   GLDVF  EP     L E+   +V PH
Sbjct: 220 KTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPH 279
Query: 321 IASAS 325
           + +++
Sbjct: 280 LGAST 284

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score =  103 bits (258), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 110/245 (44%), Gaps = 34/245 (13%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   VG +NVDV+AA   G+ V N P                   R+I  AD  +R 
Sbjct: 68  KIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR- 126
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
                W  + F G  + G+TVGV+G GRIG   A+  +  F   ++ YD Y         
Sbjct: 127 --EHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQR-IAAFGAYVVAYDPY--------- 174
Query: 208 TAYGQFLKANGEQPVTWKRAS-------SMDEVLREADVISLHPVLDKTTYHLINKERLA 260
                         V+  RA+       S+D++L  AD IS+H      T  LI+KE LA
Sbjct: 175 --------------VSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALA 220
Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 320
             K   I+VN +RG ++DE AL + +    +   GLDVF  EP     L E+   +V PH
Sbjct: 221 KTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPH 280
Query: 321 IASAS 325
           + +++
Sbjct: 281 LGAST 285

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 143/320 (44%), Gaps = 45/320 (14%)
Query: 23  PMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTEDWGE 76
           PM     + LL  +DC VE+      IL     +A     CD    Q      L E  G 
Sbjct: 20  PMHPRPLVALLDGRDCTVEM-----PILKDVATVAF----CDAQSTQEIHEKVLNEAVGA 70
Query: 77  TLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
            ++    L+R   + F  + +      G++N+D+ +A   GIAV N P            
Sbjct: 71  LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTL 130
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYARMM 184
                  RR     + +R G     +  +         ++G+T+G+IG  R+G A A + 
Sbjct: 131 CHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVA-LR 189
Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
            + F  N+++YD Y +  +E+   A G             +R S++ ++L  +D ++LH 
Sbjct: 190 AKAFGFNVLFYDPYLSDGIER---ALG------------LQRVSTLQDLLFHSDCVTLHC 234
Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP- 303
            L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E EP 
Sbjct: 235 GLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPF 294
Query: 304 -YMKPGLSEMKNAIVVPHIA 322
            + +  L +  N I  PH A
Sbjct: 295 SFSQGPLKDAPNLICTPHAA 314

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 133/277 (48%), Gaps = 27/277 (9%)
Query: 51  SVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGI 110
           S E++  +IG + DG+I   T      +     R   K  S  + GY+N+D+  A K GI
Sbjct: 32  SGEELKGVIG-RFDGIIVSPTTKITREVLENAERL--KVISCHSAGYDNIDLEEATKRGI 88
Query: 111 AVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVG----NLLKGQ 166
            V    G+                 R+I  AD+F+R G ++     ++ G      L G+
Sbjct: 89  YVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESH-AKIWTGFKRIESLYGK 147
Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
            VG++G G IG A AR ++  F + L Y+  ++   +EK + A                R
Sbjct: 148 KVGILGMGAIGKAIARRLIP-FGVKLYYWSRHRKVNVEKELKA----------------R 190
Query: 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
              +DE+L ++D++ L   L + TYH+IN+ER+  ++ +  LVN  RG ++DE A+ E +
Sbjct: 191 YMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAI 249
Query: 287 KQNPMFRVGLDVFEDEPYMKPGLSEMK-NAIVVPHIA 322
           KQ  +     DVFE EP  +  L + +   ++ PH A
Sbjct: 250 KQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYA 286

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 138/310 (44%), Gaps = 20/310 (6%)
Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           +V  T+ +P    + L    DC VE     + I + E    + G    G++  L++   +
Sbjct: 10  KVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAG--AHGLLCLLSDHVDK 67
Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXR 136
            +  A + A  K  S M+VG +++ ++   K GI VG TP V                 R
Sbjct: 68  RILDA-AGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCR 126
Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
           R+ EA E ++ G +  W P    G  L   TVG+IG GRIG A AR + + F +    Y 
Sbjct: 127 RLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRL-KPFGVQRFLYT 185
Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
             Q  R E+      +F+              S  E+  ++D I +   L   T  L NK
Sbjct: 186 GRQP-RPEEAAEFQAEFV--------------STPELAAQSDFIVVACSLTPATEGLCNK 230
Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLSEMKNA 315
           +    MK+ A+ +N SRG V+++  L + L    +   GLDV   EP      L  +KN 
Sbjct: 231 DFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNC 290
Query: 316 IVVPHIASAS 325
           +++PHI SA+
Sbjct: 291 VILPHIGSAT 300

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 124/272 (45%), Gaps = 24/272 (8%)
Query: 54  DIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVG 113
           D +AL  +    V+G         L  AL +   +  S+ +VG + VD+    + G+ V 
Sbjct: 57  DFLALQAESIRAVVGNSNAGADAELIDALPKL--EIVSSFSVGLDKVDLIKCEEKGVRVT 114
Query: 114 NTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173
           NTP V                 RRI E D+++R G +     +  +     G+ VG+IG 
Sbjct: 115 NTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK--FGDFKLTTKFSGKRVGIIGL 172
Query: 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233
           GRIG A A    E F   + Y+     +R +K  T Y  +               S+ E+
Sbjct: 173 GRIGLAVAER-AEAFDCPISYF-----SRSKKPNTNYTYY--------------GSVVEL 212
Query: 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293
              +D++ +   L   T H+IN+E +  +  + +L+N  RGP +DE  LV  L +  +  
Sbjct: 213 ASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGG 272
Query: 294 VGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
            GLDVFE EP +   L  ++N +++PH+ S +
Sbjct: 273 AGLDVFEREPEVPEKLFGLENVVLLPHVGSGT 304

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 125/264 (47%), Gaps = 35/264 (13%)
Query: 69  QLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
           QLTE+    +FAA +R    A    +VG N V++ AA K GI V N P            
Sbjct: 69  QLTEE----IFAAANRL--IAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVI 122
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
                  RRI        AG   GW         ++G+T+G++G G IGS    +  E  
Sbjct: 123 GEIIMLMRRIFPRSVSAHAG---GWEKTAIGSREVRGKTLGIVGYGNIGSQVGNL-AESL 178
Query: 189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK 248
            M + YYD   + +L+     YG             K A+S+DE+L+ +DV+SLH    K
Sbjct: 179 GMTVRYYD--TSDKLQ-----YGNV-----------KPAASLDELLKTSDVVSLHVPSSK 220
Query: 249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP----- 303
           +T  LI + +L  MKK A L+N +RG  +D  AL + L++  +    +DVF  EP     
Sbjct: 221 STSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGE 280
Query: 304 -YMKPGLSEMKNAIVVPHIASASK 326
            +  P L  ++N I+ PHI  +++
Sbjct: 281 RFSTP-LQGLENVILTPHIGGSTE 303

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 111/238 (46%), Gaps = 18/238 (7%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G                  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +   +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A   
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHI 321
             + +VN +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHI 305

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 111/238 (46%), Gaps = 18/238 (7%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G                  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +   +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A   
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHI 321
             + +VN +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHI 305

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 111/238 (46%), Gaps = 18/238 (7%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G                  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +   +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A   
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHI 321
             + +VN +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPNVSKELIEMKHVTLTTHI 305

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 113/261 (43%), Gaps = 34/261 (13%)
Query: 76  ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXX 135
           E ++  LS  G K      VG+N ++ +   KY + V N P                   
Sbjct: 60  EVVYQKLSEYGVKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLL 119
Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           R+I E    M       W  NL + N +   TVG+IG G IGSA A +        +I Y
Sbjct: 120 RKIGEFRYRMDHDHDFTWPSNL-ISNEIYNLTVGLIGVGHIGSAVAEIF-SAMGAKVIAY 177
Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255
           D+      E F+T Y  F                 D VL+EAD++SLH  L  +T ++I 
Sbjct: 178 DVAYNPEFEPFLT-YTDF-----------------DTVLKEADIVSLHTPLFPSTENMIG 219
Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------------- 302
           +++L  MKK A L+NC+RG ++D  AL++ L+   +   GLD    E             
Sbjct: 220 EKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSE 279
Query: 303 -PYMKPGLSEMKNAIVVPHIA 322
            P     L++M N ++ PH A
Sbjct: 280 IPEDYKTLAKMPNVVITPHSA 300

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 136/310 (43%), Gaps = 20/310 (6%)
Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           +V  T+ +P    + L    DC VE     + I + E    + G    G++  L++   +
Sbjct: 8   KVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAG--AHGLLCLLSDHVDK 65
Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXR 136
            +  A + A  K  S  +VG +++ ++   K GI VG TP V                 R
Sbjct: 66  RILDA-AGANLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCR 124
Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
           R+ EA E ++ G +  W P    G  L   TVG+IG GRIG A AR + + F +    Y 
Sbjct: 125 RLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRL-KPFGVQRFLYT 183
Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
             Q  R E+      +F+              S  E+  ++D I +   L   T  L NK
Sbjct: 184 GRQP-RPEEAAEFQAEFV--------------STPELAAQSDFIVVACSLTPATEGLCNK 228
Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLSEMKNA 315
           +     K+ A+ +N SRG V+++  L + L    +   GLDV   EP      L  +KN 
Sbjct: 229 DFFQKXKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNC 288
Query: 316 IVVPHIASAS 325
           +++PHI SA+
Sbjct: 289 VILPHIGSAT 298

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 108/241 (44%), Gaps = 25/241 (10%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 78  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 137
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y+                + L 
Sbjct: 138 R-FYGTGLDNATVGFLGXGAIGLAXADRL-QGWGATLQYH--------------AAKALD 181
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 182 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 240
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKV 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 241 VVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 300
Query: 328 I 328
           +
Sbjct: 301 V 301

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 25/241 (10%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y++               + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYHE--------------AKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKV 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 328 I 328
           +
Sbjct: 300 V 300

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score = 98.2 bits (243), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 25/241 (10%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y++               + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYHE--------------AKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKV 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 328 I 328
           +
Sbjct: 300 V 300

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 108/241 (44%), Gaps = 25/241 (10%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y+                + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYH--------------ARKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKV 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 328 I 328
           +
Sbjct: 300 V 300

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 108/241 (44%), Gaps = 25/241 (10%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y+                + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYH--------------ARKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKV 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 328 I 328
           +
Sbjct: 300 V 300

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 21/231 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           VG + VD+  A +  I V  TPGV                 RR+ + D  +R G +    
Sbjct: 102 VGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLVREGRWAAG- 160
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
             L +G+  KG+ +GV+G G+IG A A    E F  ++ Y++           T  G   
Sbjct: 161 EQLPLGHSPKGKRIGVLGLGQIGRALASR-AEAFGXSVRYWNRS---------TLSG--- 207
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                  V W    S  ++ R++DV+++       T ++++   L  +  E I+VN +RG
Sbjct: 208 -------VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARG 260
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
            V+DE AL+E LK   +   GLDVF +EP ++       N ++ PH  SA+
Sbjct: 261 NVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLXPHQGSAT 311

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 122/274 (44%), Gaps = 37/274 (13%)
Query: 64  DGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXX 123
           DG+    T  +   +F  +   G K  +   VG +N+D+ A  +YGI + N P       
Sbjct: 46  DGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAI 105
Query: 124 XXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARM 183
                       R + +    ++AG Y+      F+G  L  QTVGV+G G IG   A  
Sbjct: 106 AEFALTDTLYLLRNMGKVQAQLQAGDYEK--AGTFIGKELGQQTVGVMGTGHIGQV-AIK 162
Query: 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243
           + +GF   +I YD Y                   G+ P       S++++ +++DVI LH
Sbjct: 163 LFKGFGAKVIAYDPY----------------PMKGDHPDF--DYVSLEDLFKQSDVIDLH 204
Query: 244 -PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
            P +++ T H+IN+     MK  AI++N +R  +ID  A++ +LK   +  VG+D +E E
Sbjct: 205 VPGIEQNT-HIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYE 263
Query: 303 -----------PYMKPGLSE---MKNAIVVPHIA 322
                       +  P   E   M N ++ PHIA
Sbjct: 264 TEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIA 297

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 113/251 (45%), Gaps = 36/251 (14%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K     +VG++++D++   K GI V + P                   +R+   ++  R 
Sbjct: 66  KLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIED--RV 123
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
              +    +  +   L   T+GVIG GRIGS  A   +  F   ++ YD+ +   L++  
Sbjct: 124 KKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGL-AFGXKVLCYDVVKREDLKEKG 182
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
             Y                 +S+DE+L+E+DVISLH    K T+H IN+ER++  K    
Sbjct: 183 CVY-----------------TSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVY 225
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--------KPGLSEMK------ 313
           L+N +RG V+D  AL    ++     +GLDVFEDE  +        K     +K      
Sbjct: 226 LINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELAC 285
Query: 314 --NAIVVPHIA 322
             N I+ PHIA
Sbjct: 286 KDNVIITPHIA 296

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 29/244 (11%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A    A+G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 78  AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 137
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E   M + +YD+     L     
Sbjct: 138 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL----- 188
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L
Sbjct: 189 -------GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLL 235
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L+E  N ++ PHI 
Sbjct: 236 INASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP-LAEFDNVLLTPHIG 294
Query: 323 SASK 326
            +++
Sbjct: 295 GSTQ 298

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 29/244 (11%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A    A+G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 78  AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 137
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E   M + +YD+     L     
Sbjct: 138 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL----- 188
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L
Sbjct: 189 -------GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLL 235
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L+E  N ++ PHI 
Sbjct: 236 INASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP-LAEFDNVLLTPHIG 294
Query: 323 SASK 326
            +++
Sbjct: 295 GSTQ 298

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 107/244 (43%), Gaps = 29/244 (11%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A     +G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 77  AIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 136
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E   M + +YD+     L     
Sbjct: 137 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL----- 187
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L
Sbjct: 188 -------GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLL 234
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L E  N ++ PHI 
Sbjct: 235 INASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSP-LCEFDNVLLTPHIG 293
Query: 323 SASK 326
            +++
Sbjct: 294 GSTQ 297

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 25/242 (10%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   +G +N+D   A K  I V   PG                  R++  +    ++
Sbjct: 70  KIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKS 129
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G++         G  L G+T+G++G GRIG+    ++     M ++ YD+       + +
Sbjct: 130 GIFKK-----IEGLELAGKTIGIVGFGRIGTKVG-IIANAMGMKVLAYDILDIREKAEKI 183
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
            A                +A S++E+L+ +DVISLH  + K    +I+  +   MK   I
Sbjct: 184 NA----------------KAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVI 227
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP---GLSEMKNAIVVPHIASA 324
           +VN SR   ++  AL++++K+  ++    DVF +EP  +     L + +  IV  HI + 
Sbjct: 228 IVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQ 287
Query: 325 SK 326
           +K
Sbjct: 288 TK 289

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 23/171 (13%)
Query: 155 PNLFVGNLLKGQTVGVIGAGRIG---SAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
           PN  +G +LKGQT+G+ G G+IG   + Y R     F MN++ +    +           
Sbjct: 150 PNFGIGRVLKGQTLGIFGYGKIGQLVAGYGR----AFGMNVLVWGRENSK---------- 195
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
           +  +A+G     +  A S D +  ++DV+S+H  L+  T  +I    L  MK  A+ VN 
Sbjct: 196 ERARADG-----FAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNT 250
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHI 321
           SR  +++E  +V  L +       +DVFE EP ++   L  M+N I  PHI
Sbjct: 251 SRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHI 301

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 29/244 (11%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A    A+G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 72  AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 131
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           + +      F     +G+ +G+IG G IG+    ++ E     + +YD+     L     
Sbjct: 132 VGNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGXYVYFYDIENKLPL----- 182
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +    + ++  K  ++L
Sbjct: 183 -------GNATQ------VQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLL 229
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L+E  N ++ PHI 
Sbjct: 230 INASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP-LAEFDNVLLTPHIG 288
Query: 323 SASK 326
            +++
Sbjct: 289 GSTQ 292

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 29/244 (11%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A     +G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 78  AIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 137
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E     + +YD+     L     
Sbjct: 138 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGXYVYFYDIENKLPL----- 188
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +    + ++  K  ++L
Sbjct: 189 -------GNATQ------VQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLL 235
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L E  N ++ PHI 
Sbjct: 236 INASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSP-LCEFDNVLLTPHIG 294
Query: 323 SASK 326
            +++
Sbjct: 295 GSTQ 298

>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 229 SMDEVLREADVISLHPVLDK----TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE 284
           S++ +L EADVISLH  L++     T HL+++ RLA ++    LVN SRG V+D  AL  
Sbjct: 160 SLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRR 219
Query: 285 HLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
            L+      V LDV+E EP   P L+  +  I  PHIA  S
Sbjct: 220 LLEGGADLEVALDVWEGEPQADPELA-ARCLIATPHIAGYS 259

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 25/167 (14%)
Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
           G  L+ +T+G++G G +GS   +  +E   +  +  D  +A R ++     G F      
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRL-QTRLEALGIRTLLCDPPRAARGDE-----GDF------ 161
Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDK----TTYHLINKERLATMKKEAILVNCSRGP 275
                    ++DE+++EADV++ H  L K     T HL ++  +  +K  AIL+N  RGP
Sbjct: 162 --------RTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGP 213
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322
           V+D  AL+  L       V LDV+E EP +   L E  + I   HIA
Sbjct: 214 VVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVD-IGTSHIA 259

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 19/140 (13%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           ++  TVGV+G GRIG   A++   G    +I  D+++   +E + T              
Sbjct: 144 VRNCTVGVVGLGRIGRVAAQIF-HGMGATVIGEDVFEIKGIEDYCTQV------------ 190
Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
                 S+DEVL ++D+I++H    K    ++ ++ L  MK  AILVNC+RG ++D  A+
Sbjct: 191 ------SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAV 244
Query: 283 VEHLKQNPMFRVGLDVFEDE 302
           +E ++   +   G DV + E
Sbjct: 245 IEAVESGKLGGYGCDVLDGE 264

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQP 221
           L+G+T+G +GAGRIG    + + + F  NL+Y+D  Q A  LEK   A            
Sbjct: 168 LEGKTIGTVGAGRIGKLLLQRL-KPFGCNLLYHDRLQMAPELEKETGA------------ 214
Query: 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 281
              K    ++E+L + DVI ++  L + T  + NKE +  +KK  ++VN +RG +++  A
Sbjct: 215 ---KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 271
Query: 282 LVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASAS 325
           +V+ ++   +     DV++ +P  K      M N  + PH +  +
Sbjct: 272 VVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 316

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQP 221
           L+G+T+G +GAGRIG    + + + F  NL+Y+D  Q A  LEK   A            
Sbjct: 162 LEGKTIGTVGAGRIGKLLLQRL-KPFGCNLLYHDRLQMAPELEKETGA------------ 208
Query: 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 281
              K    ++E+L + DVI ++  L + T  + NKE +  +KK  ++VN +RG +++  A
Sbjct: 209 ---KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 265
Query: 282 LVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASAS 325
           +V+ ++   +     DV++ +P  K      M N  + PH +  +
Sbjct: 266 VVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 310

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 14/144 (9%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           ++G+T+  IGAGRIG      +V      L+YYD YQA             L  + E+ V
Sbjct: 162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYD-YQA-------------LPKDAEEKV 207
Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
             +R  +++E++ +AD+++++  L   T  LINKE L+  KK A LVN +RG +     +
Sbjct: 208 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDV 267
Query: 283 VEHLKQNPMFRVGLDVFEDEPYMK 306
              L+   +   G DV+  +P  K
Sbjct: 268 AAALESGQLRGYGGDVWFPQPAPK 291

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 14/144 (9%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           ++G+T+  IGAGRIG      +V      L+YYD YQA             L  + E+ V
Sbjct: 163 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYD-YQA-------------LPKDAEEKV 208
Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
             +R  +++E++ +AD+++++  L   T  LINKE L+  KK A LVN +RG +     +
Sbjct: 209 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDV 268
Query: 283 VEHLKQNPMFRVGLDVFEDEPYMK 306
              L+   +   G DV+  +P  K
Sbjct: 269 AAALESGQLRGYGGDVWFPQPAPK 292

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AA    I V                       R  + + ++ R G   GW 
Sbjct: 122 IGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNG---GWN 178
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V     ++G  VG + AGRIG    R++   F M+L Y D +   RL + V     
Sbjct: 179 IADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAP-FDMHLHYTDRH---RLPEAVEK--- 231
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A LVN +
Sbjct: 232 ------ELNLTWH--ATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTA 283
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVF--EDEPYMKPGLSEMKNAIVVPHIASAS 325
           RG + D  A+V  L+   +     DV+  +  P   P  +   N +  PHI+  S
Sbjct: 284 RGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGM-TPHISGTS 337

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AA    I V                       R  + + ++ R G   GW 
Sbjct: 123 IGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNG---GWN 179
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V     ++G  VG + AGRIG    R++   F M+L Y D +   RL + V     
Sbjct: 180 IADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAP-FDMHLHYTDRH---RLPEAVEK--- 232
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A LVN +
Sbjct: 233 ------ELNLTWH--ATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTA 284
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVF--EDEPYMKPGLSEMKNAIVVPHIASAS 325
           RG + D  A+V  L+   +     DV+  +  P   P  +   N +  PHI+  S
Sbjct: 285 RGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGM-TPHISGTS 338

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ +A    + V                       R  + + E+ R G   GW 
Sbjct: 122 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 178
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V +   L+   VG + AGRIG A  R +   F ++L Y D +   RL + V     
Sbjct: 179 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 229
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 230 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 283
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 325
           RG + D  A+   L+   +     DV+  +P  K  P  +   N +  PHI+  +
Sbjct: 284 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM-TPHISGTT 337

>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 33/168 (19%)
Query: 136 RRIVEADEFMRAGLY--DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI 193
           +RI++  E  + G Y  D  +P      L++G+ V V+G G IG                
Sbjct: 99  KRIIQYGEKXKRGDYGRDVEIP------LIQGEKVAVLGLGEIG---------------- 136
Query: 194 YYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLREADVISLHPVLDKTTY 251
                  TR+ K + A G  ++     P    W+  +S++E LREA        L+K T 
Sbjct: 137 -------TRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTR 189
Query: 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
            L+  + LA   ++A+ VN  R  V+D   ++  LK+ P F    DV+
Sbjct: 190 GLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW 237

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ +A    + V                       R  + + E+ R G   GW 
Sbjct: 123 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 179
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V +   L+   VG + AGRIG A  R +   F ++L Y D +   RL + V     
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 230
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 231 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 284
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 325
           RG + D  A+   L+   +     DV+  +P  K  P  +   N +  PHI+  +
Sbjct: 285 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM-TPHISGTT 338

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ +A    + V                       R  + + E+ R G   GW 
Sbjct: 123 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 179
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V +   L+   VG + AGRIG A  R +   F ++L Y D +   RL + V     
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 230
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 231 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 284
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 325
           RG + D  A+   L+   +     DV+  +P  K  P  +   N +  PHI+  +
Sbjct: 285 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM-TPHISGTT 338

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY- 304
           L  TT+HL + E     K++ +L+N  RGP +D  AL+  L  + +    LDV E EP  
Sbjct: 201 LTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLP 260
Query: 305 MKPGLSEMKNAIVVPHIA 322
               L +  + ++ PHI+
Sbjct: 261 TDHPLWQRDDVLITPHIS 278

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 26/177 (14%)
Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
           W  + + G  LKG+T+ ++G G IG   A    + F M ++       +R  +    + Q
Sbjct: 130 WQSHPYQG--LKGRTLLILGTGSIGQHIAHTG-KHFGMKVL-----GVSRSGRERAGFDQ 181
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVI-SLHPVLDKTTYHLINKERLATMKKEAILVNC 271
             +             +++++L +ADVI S+ P   + T+HL    R    K  AIL N 
Sbjct: 182 VYQL-----------PALNKMLAQADVIVSVLPA-TRETHHLFTASRFEHCKPGAILFNV 229
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEM---KNAIVVPHIASAS 325
            RG  I+E  L+  L+   +    LDVFE EP   P  S +    N I+ PH ++ S
Sbjct: 230 GRGNAINEGDLLTALRTGKLGMAVLDVFEQEPL--PADSPLWGQPNLIITPHNSAYS 284

>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 211 GQFLKANGEQPVTWKRAS----------SMDEVLREADVISLHPVLDKTTYHLINKERLA 260
               KA G + + + R+S          S  ++ R++D + +   L   T   +N   LA
Sbjct: 138 AHLAKAFGXRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGXVNSRLLA 197
Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 320
             +K   +VN +R  V+ +   +  LK+        DV+ +EP +    + ++NAI+ PH
Sbjct: 198 NARKNLTIVNVARADVVSKPDXIGFLKERSDVWYLSDVWWNEPEITE--TNLRNAILSPH 255
Query: 321 IA 322
           +A
Sbjct: 256 VA 257

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	328
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	1e-103
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	1e-102
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	1e-99
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	1e-98
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	5e-97
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	2e-95
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	4e-93
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	2e-89
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	8e-89
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	2e-87
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	2e-82
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	3e-82
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	1e-80
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	2e-79
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	1e-78
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	9e-78
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	2e-77
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	8e-77
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	4e-74
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	1e-73
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	8e-73
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	5e-71
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	1e-69
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	3e-68
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	7e-66
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	2e-65
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	2e-65
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	5e-60
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	1e-59
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	5e-58
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	1e-31
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	2e-29
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	3e-12

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  304 bits (780), Expect = e-103
 Identities = 82/312 (26%), Positives = 147/312 (47%), Gaps = 20/312 (6%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +++ T P+P    +     +   V         ++++++I       D ++  L E  
Sbjct: 1   KKKILITWPLPEA-AMARA-RESYDVIA-HGDDPKITIDEMIETAKS-VDALLITLNEKC 56

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
            + +   +     K  S  ++G++++D++A    GI VGN P  +T  TAE+A  L L +
Sbjct: 57  RKEVIDRIPE-NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGS 115

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
           ARR  E ++ +R   + GW P   VG  L  +T+G+ G G IG A A+   +GF M++ Y
Sbjct: 116 ARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRA-QGFDMDIDY 174

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           +D ++                ++ E         S+D +L  +   SL+      T +  
Sbjct: 175 FDTHR--------------ASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF 220

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
           NK  + ++ + AI+VN +RG ++D   +V  L+   +   G DVF  EP +  G  ++ N
Sbjct: 221 NKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPN 280

Query: 315 AIVVPHIASASK 326
             + PHI SA+ 
Sbjct: 281 TFLFPHIGSAAT 292

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  302 bits (777), Expect = e-102
 Identities = 116/316 (36%), Positives = 178/316 (56%), Gaps = 27/316 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V  T+ +P    I +L E +  VE+    +  +  E ++  + +  D ++  L+E  
Sbjct: 2   KPKVFITREIP-EVGIKML-EDEFEVEVW-GDEKEIPREILLKKVKE-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
            + +F    +   +  +N AVGY+N+D+  A K GI V NTP VLT+ TA+LA +L LA 
Sbjct: 58  DKEVFENAPKL--RIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLAT 115

Query: 135 ARRIVEADEFMRAG----LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           AR +V+ D F+R+G        W P  F+G  + G+T+G+IG GRIG A A+   +GF M
Sbjct: 116 ARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRA-KGFNM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++YY   +   +E+ + A                    ++++LRE+D + L   L + T
Sbjct: 175 RILYYSRTRKEEVERELNA----------------EFKPLEDLLRESDFVVLAVPLTRET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
           YHLIN+ERL  MKK AIL+N +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L 
Sbjct: 219 YHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELF 278

Query: 311 EMKNAIVVPHIASASK 326
           ++ N ++ PHI SAS 
Sbjct: 279 KLDNVVLTPHIGSASF 294

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  296 bits (760), Expect = 1e-99
 Identities = 85/312 (27%), Positives = 148/312 (47%), Gaps = 22/312 (7%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
             +    +       I   + Q   +E+   + T+L+   I +      + +    TE  
Sbjct: 28  IQKAFLCRRFTPA--IEAELRQRFDLEV-NLEDTVLTPSGIASRAHG-AEVLFVTATEAI 83

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +   L   G K  + ++VGY+++D+ AA   GI V +TP VL++  AE+A  L L A
Sbjct: 84  TAEVIRKLQ-PGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNA 142

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
            RR  EAD  +R+G + GW P   +G  L G+ +G+ G GRIG A A     GF + + Y
Sbjct: 143 CRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRA-RGFGLAIHY 201

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           ++  + +   +    Y                  ++D +L  +D+  +           +
Sbjct: 202 HNRTRLSHALEEGAIY----------------HDTLDSLLGASDIFLIAAPGRPELKGFL 245

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
           + +R+A + + A+++N SRG +I++ AL+E L+   +F  GLDVF +EP + P    + N
Sbjct: 246 DHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDN 305

Query: 315 AIVVPHIASASK 326
             + PHI SA+ 
Sbjct: 306 IFLTPHIGSATH 317

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  293 bits (752), Expect = 1e-98
 Identities = 94/317 (29%), Positives = 143/317 (45%), Gaps = 22/317 (6%)

Query: 12  PNGKYRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL 70
           P    +V  T+ +P       L    DC VE        +  +++   +     G++  L
Sbjct: 5   PVRLMKVFVTRRIP-AEGRVALARAADCEVEQ-WDSDEPIPAKELERGVAG-AHGLLCLL 61

Query: 71  TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL 130
           ++   + +  A   A  K  S M+VG +++ ++   K GI VG TP VLT+TTAELA SL
Sbjct: 62  SDHVDKRILDAAG-ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSL 120

Query: 131 SLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
            L   RR+ EA E ++ G +  W P    G  L   TVG+IG GRIG A AR +   F +
Sbjct: 121 LLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLK-PFGV 179

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
               Y         +    +             +    S  E+  ++D I +   L   T
Sbjct: 180 QRFLYT--GRQPRPEEAAEFQ----------AEFV---STPELAAQSDFIVVACSLTPAT 224

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGL 309
             L NK+    MK+ A+ +N SRG V+++  L + L    +   GLDV   EP      L
Sbjct: 225 EGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPL 284

Query: 310 SEMKNAIVVPHIASASK 326
             +KN +++PHI SA+ 
Sbjct: 285 LTLKNCVILPHIGSATH 301

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  288 bits (739), Expect = 5e-97
 Identities = 108/311 (34%), Positives = 167/311 (53%), Gaps = 30/311 (9%)

Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           RV+ T+ +P  + ++ L E+    E+   +   L   +++  +     G+I  + +    
Sbjct: 2   RVLVTRTLP-GKALDRLRERGL--EVEVHRGLFLPKAELLKRVEG-AVGLIPTVEDRIDA 57

Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
            +         K  +  +VG ++VD+ AA + GI V +TPGVLTE TA+L  +L LA AR
Sbjct: 58  EVMDRAKGL--KVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVAR 115

Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
           R+VE   + R GL+  W P L +G  L+G T+G++G GRIG A A+     F M ++Y+ 
Sbjct: 116 RVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRA-LAFGMRVVYHA 174

Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
                R  K               P  +    S++E+L+EADV+SLH  L   T+ L+N+
Sbjct: 175 -----RTPK-------------PLPYPFL---SLEELLKEADVVSLHTPLTPETHRLLNR 213

Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNA 315
           ERL  MK+ AIL+N +RG ++D  ALVE L+   +F  GLDV + EP      L  + NA
Sbjct: 214 ERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNA 272

Query: 316 IVVPHIASASK 326
           ++ PHI SA +
Sbjct: 273 VITPHIGSAGR 283

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  284 bits (730), Expect = 2e-95
 Identities = 89/319 (27%), Positives = 140/319 (43%), Gaps = 31/319 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
             ++V T  +     + LL    C +    Q  + L+ E+I+    D    ++  + +  
Sbjct: 2   LPKLVITHRVHE-EILQLL-APHCELITN-QTDSTLTREEILRRCRD-AQAMMAFMPDRV 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
                 A      +       G++N DV+A    G+ +   P +LT  TAELA  L++  
Sbjct: 58  DADFLQACPEL--RVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGL 115

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
            R +  AD F+R+G + GW P  F G  L   TVG +G G IG A A  +  G+   L Y
Sbjct: 116 GRHLRAADAFVRSGKFRGWQP-RFYGTGLDNATVGFLGMGAIGLAMADRLQ-GWGATLQY 173

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           ++                 L    EQ +  ++  +  E+   +D I L   L+  T HL+
Sbjct: 174 HEAKA--------------LDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLV 218

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-------- 306
           N E LA ++  A+LVN  RG V+DE A++  L++  +     DVFE E + +        
Sbjct: 219 NAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQID 278

Query: 307 PGLSEMKNAIVVPHIASAS 325
           P L    N +  PHI SA 
Sbjct: 279 PALLAHPNTLFTPHIGSAV 297

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  279 bits (717), Expect = 4e-93
 Identities = 79/302 (26%), Positives = 131/302 (43%), Gaps = 25/302 (8%)

Query: 34  IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAALSRAGG 87
            +Q   V            + +        + +I      G  +  W   L + L  +  
Sbjct: 23  FQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLP-SSL 81

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G     T++LA  L L+  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141

Query: 148 GLYDGWLPNLF----VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +           +  +G  +G +G G I    AR  V G  M L+YYD+      
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAP---- 197

Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 198 ----------ADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247

Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323
             + +VN +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI  
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGG 307

Query: 324 AS 325
            +
Sbjct: 308 VA 309

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  270 bits (692), Expect = 2e-89
 Identities = 82/315 (26%), Positives = 138/315 (43%), Gaps = 29/315 (9%)

Query: 11  NPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL 70
             N K  ++  +PM    ++   ++++  V    Q         + A +      V    
Sbjct: 26  FRNVKPDLLLVEPMM--PFVMDELQRNYSVHRLYQA---ADRPALEAALPS-IRAVATGG 79

Query: 71  TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL 130
                      L        +   VG + VD+  A +  I V  TPGVL +  A+L  +L
Sbjct: 80  GAGLSNEWMEKLPSL--GIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIAL 137

Query: 131 SLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
            LA  RR+ + D  +R G +      L +G+  KG+ +GV+G G+IG A A    E F M
Sbjct: 138 MLAVLRRVGDGDRLVREGRWAAG-EQLPLGHSPKGKRIGVLGLGQIGRALASR-AEAFGM 195

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
           ++ Y++     R                   V W    S  ++ R++DV+++       T
Sbjct: 196 SVRYWN-----RSTL--------------SGVDWIAHQSPVDLARDSDVLAVCVAASAAT 236

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
            ++++   L  +  E I+VN +RG V+DE AL+E LK   +   GLDVF +EP ++    
Sbjct: 237 QNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFH 296

Query: 311 EMKNAIVVPHIASAS 325
              N +++PH  SA+
Sbjct: 297 TTPNTVLMPHQGSAT 311

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  268 bits (687), Expect = 8e-89
 Identities = 91/316 (28%), Positives = 144/316 (45%), Gaps = 31/316 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           + +V     M     +  L ++   VEI        S E++  +IG   DG+I   T   
Sbjct: 2   RPKVGVLLKMKRE-ALEEL-KKYADVEIILY----PSGEELKGVIGR-FDGIIVSPTTKI 54

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +     R   K  S  + GY+N+D+  A K GI V    G+L+E  AE    L +  
Sbjct: 55  TREVLENAERL--KVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINL 112

Query: 135 ARRIVEADEFMRAGLYDGWLP---NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMN 191
            R+I  AD+F+R G ++              L G+ VG++G G IG A AR +   F + 
Sbjct: 113 MRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRL-IPFGVK 171

Query: 192 LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251
           L Y+  ++   +EK + A                R   +DE+L ++D++ L   L + TY
Sbjct: 172 LYYWSRHRKVNVEKELKA----------------RYMDIDELLEKSDIVILALPLTRDTY 215

Query: 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGL-S 310
           H+IN+ER+  ++    LVN  RG ++DE A+ E +KQ  +     DVFE EP  +  L  
Sbjct: 216 HIINEERVKKLEG-KYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFK 274

Query: 311 EMKNAIVVPHIASASK 326
                ++ PH A  + 
Sbjct: 275 YEWETVLTPHYAGLAL 290

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  264 bits (677), Expect = 2e-87
 Identities = 86/311 (27%), Positives = 145/311 (46%), Gaps = 29/311 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
              V+   PM    ++   +++  ++    +  T  +  D +AL  +    V+G      
Sbjct: 23  AIGVLMMCPMST--YLEQELDKRFKL---FRYWTQPAQRDFLALQAESIRAVVGNSNAGA 77

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              L  AL +   +  S+ +VG + VD+    + G+ V NTP VLT+  A+LA  L LA 
Sbjct: 78  DAELIDALPKL--EIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAV 135

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
            RRI E D+++R G +     +  +     G+ VG+IG GRIG A A    E F   + Y
Sbjct: 136 LRRICECDKYVRRGAWKFG--DFKLTTKFSGKRVGIIGLGRIGLAVAER-AEAFDCPISY 192

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           +      R +K                  +    S+ E+   +D++ +   L   T H+I
Sbjct: 193 FS-----RSKK--------------PNTNYTYYGSVVELASNSDILVVACPLTPETTHII 233

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
           N+E +  +  + +L+N  RGP +DE  LV  L +  +   GLDVFE EP +   L  ++N
Sbjct: 234 NREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLEN 293

Query: 315 AIVVPHIASAS 325
            +++PH+ S +
Sbjct: 294 VVLLPHVGSGT 304

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  252 bits (646), Expect = 2e-82
 Identities = 81/321 (25%), Positives = 137/321 (42%), Gaps = 29/321 (9%)

Query: 12  PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLT 71
            +    V        T  + +L +    V  C       S ++I   + ++  G +   T
Sbjct: 18  GSHMPLVALLDGRDCTVEMPIL-KDVATVAFCDA----QSTQEIHEKVLNEAVGALMYHT 72

Query: 72  EDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLS 131
                           +    +  G++N+D+ +A   GIAV N P    E TA+      
Sbjct: 73  ITLTREDLEKFKAL--RIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHI 130

Query: 132 LAAARRIVEADEFMRAGL----YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187
           L   RR     + +R G      +           ++G+T+G+IG GR+G A A    + 
Sbjct: 131 LNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA-KA 189

Query: 188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD 247
           F  N+++YD Y               L    E+ +  +R S++ ++L  +D ++LH  L+
Sbjct: 190 FGFNVLFYDPY---------------LSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLN 234

Query: 248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP 307
           +  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E EP+   
Sbjct: 235 EHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFS 294

Query: 308 G--LSEMKNAIVVPHIASASK 326
              L +  N I  PH A  S+
Sbjct: 295 QGPLKDAPNLICTPHAAWYSE 315

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  250 bits (641), Expect = 3e-82
 Identities = 58/275 (21%), Positives = 102/275 (37%), Gaps = 30/275 (10%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
           +    + G     V   L         A + R   K    +  G +++   +     + V
Sbjct: 19  KYFKIVRGGDLGNVEAALVSRITAEELAKMPRL--KFIQVVTAGLDHLPWESIPP-HVTV 75

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
               G   +  AE A +L LA  +RI++  E M+ G Y   +       L++G+ V V+G
Sbjct: 76  AGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE----IPLIQGEKVAVLG 131

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG+   +++       +  +                            W+  +S++E
Sbjct: 132 LGEIGTRVGKIL-AALGAQVRGFSRTPK--------------------EGPWRFTNSLEE 170

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
            LREA        L+K T  L+  + LA M ++A+ VN  R  V+D   ++  LK+ P F
Sbjct: 171 ALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF 230

Query: 293 RVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASAS 325
               DV+              + N +  P +A   
Sbjct: 231 IFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGY 265

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  246 bits (630), Expect = 1e-80
 Identities = 100/313 (31%), Positives = 161/313 (51%), Gaps = 29/313 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           + +V+   P+   + I +L +    V      +     + ++ L+ D  + +I +     
Sbjct: 3   RMKVLVAAPLH-EKAIQVLKDAGLEVIY----EEYPDEDRLVELVKD-VEAIIVRSKPKV 56

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +  +  +   K  +   VG +N+DV AA + GI V N P   + + AELA  L  + 
Sbjct: 57  TRRVIESAPKL--KVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSV 114

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
           AR+I  AD  MR G    W     +G  L+G+T+G+IG GRIG   A++      MN++ 
Sbjct: 115 ARKIAFADRKMREG---VWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIA-NALGMNILL 170

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           YD Y     E+                  +     ++ +L+E+DV+++H  L ++TYHLI
Sbjct: 171 YDPYPN---EERAKEVN----------GKFV---DLETLLKESDVVTIHVPLVESTYHLI 214

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMK 313
           N+ERL  MKK AIL+N SRGPV+D  ALV+ LK+  +   GLDVFE+EP  K   L++  
Sbjct: 215 NEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFD 274

Query: 314 NAIVVPHIASASK 326
           N ++ PHI +++ 
Sbjct: 275 NVVLTPHIGASTV 287

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  242 bits (619), Expect = 1e-78
 Identities = 79/288 (27%), Positives = 124/288 (43%), Gaps = 36/288 (12%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
            + +AL     DGV+     D+      AL+  G    S   VG +N+D+  A + G  +
Sbjct: 38  PETVALAKG-ADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQI 96

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
            N P       AE AA  +    R+    DE +             +G  ++ Q VGV+G
Sbjct: 97  TNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARH---DLRWAPTIGREVRDQVVGVVG 153

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG  + ++M EGF   +I YD+++   LEK                       S+D+
Sbjct: 154 TGHIGQVFMQIM-EGFGAKVITYDIFRNPELEKKGYYV-----------------DSLDD 195

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
           + ++ADVISLH        H+IN E +A MK++ ++VN SRGP++D  A++  L    +F
Sbjct: 196 LYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF 255

Query: 293 RVGLDVFEDEPYMKPG--------------LSEMKNAIVVPHIASASK 326
              +DV+E E  +                 L    N +V P  A  + 
Sbjct: 256 GYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTT 303

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  242 bits (619), Expect = 9e-78
 Identities = 66/300 (22%), Positives = 118/300 (39%), Gaps = 23/300 (7%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG-- 87
           +   +E +    + T  K           + D  D VI Q    W   L           
Sbjct: 59  LRKYLESNGHTLVVTSDKD-GPDSVFERELVD-ADVVISQPF--WPAYLTPERIAKAKNL 114

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K      +G ++VD+ +A    + V       + + AE    + L+  R  + + E+ R 
Sbjct: 115 KLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARK 174

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G ++     +     L+   VG + AGRIG A  R +   F ++L Y D ++        
Sbjct: 175 GGWN-IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLA-PFDVHLHYTDRHR-------- 224

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
                 L  + E+ +     ++ +++    DV++L+  L   T H+IN E L   K+ A 
Sbjct: 225 ------LPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAY 278

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASK 326
           +VN +RG + D  A+   L+   +     DV+  +P  K      M    + PHI+  + 
Sbjct: 279 IVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTL 338

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  239 bits (611), Expect = 2e-77
 Identities = 62/295 (21%), Positives = 115/295 (38%), Gaps = 37/295 (12%)

Query: 47  KTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN 106
              L+ ++   +     D VI +      +       + G K       G +++D   A 
Sbjct: 31  PDYLNTKETAEMAAG-FDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAK 89

Query: 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ 166
           + G  +   P       AELA + ++   R             +   +        ++  
Sbjct: 90  ELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK--VDAFMFSKEVRNC 147

Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
           TVGV+G GRIG   A++   G    +I  D+++   +E + T                  
Sbjct: 148 TVGVVGLGRIGRVAAQIF-HGMGATVIGEDVFEIKGIEDYCT-Q---------------- 189

Query: 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
             S+DEVL ++D+I++H    K    ++ ++ L  MK  AILVNC+RG ++D  A++E +
Sbjct: 190 -VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAV 248

Query: 287 KQNPMFRVGLDVFEDE---------------PYMKPGLSEMKNAIVVPHIASASK 326
           +   +   G DV + E               P  +  +      ++ PH+ S + 
Sbjct: 249 ESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTD 303

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  236 bits (604), Expect = 8e-77
 Identities = 63/289 (21%), Positives = 117/289 (40%), Gaps = 30/289 (10%)

Query: 40  VEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG--KAFSNMAVGY 97
           +++         V +I   + D  D        D    +       G   K    ++ G 
Sbjct: 1   LDVYVNFPADGHVREIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVLGKRTKMIQAISAGV 60

Query: 98  NNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL 157
           +++DVN   +  +   N     + + AE A +L LA A+ I+E +E M+AG++       
Sbjct: 61  DHIDVNGIPENVVLCSNAGA-YSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP--- 116

Query: 158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN 217
               LL G+ +G++G G IG   A +  + F M +I Y                   +  
Sbjct: 117 --TTLLYGKALGILGYGGIGRRVAHLA-KAFGMRVIAYTRSSVD-------------QNV 160

Query: 218 GEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277
                      S  ++ R++D + +   L   T  ++N   LA  +K   +VN +R  V+
Sbjct: 161 DVISE------SPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVV 214

Query: 278 DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK 326
            +  ++  LK+        DV+ +EP  +   + ++NAI+ PH+A    
Sbjct: 215 SKPDMIGFLKERSDVWYLSDVWWNEP--EITETNLRNAILSPHVAGGMS 261

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  230 bits (589), Expect = 4e-74
 Identities = 76/284 (26%), Positives = 123/284 (43%), Gaps = 36/284 (12%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
           E+ +       DG+    T  +   +F  +   G K  +   VG +N+D+ A  +YGI +
Sbjct: 36  ENTVEWAKG-FDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRL 94

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
            N P       AE A + +L   R + +    ++AG Y+      F+G  L  QTVGV+G
Sbjct: 95  SNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE--KAGTFIGKELGQQTVGVMG 152

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG    ++  +GF   +I YD Y           Y                  S+++
Sbjct: 153 TGHIGQVAIKLF-KGFGAKVIAYDPYPMKGDHPDFD-Y-----------------VSLED 193

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
           + +++DVI LH    +   H+IN+     MK  AI++N +R  +ID  A++ +LK   + 
Sbjct: 194 LFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLA 253

Query: 293 RVGLDVFEDEPYMKPG--------------LSEMKNAIVVPHIA 322
            VG+D +E E                    L  M N ++ PHIA
Sbjct: 254 GVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIA 297

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  230 bits (588), Expect = 1e-73
 Identities = 63/294 (21%), Positives = 117/294 (39%), Gaps = 32/294 (10%)

Query: 41  EICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAALSRAGGKAFSNMA 94
           +            ++   I D    +I        +T +              K      
Sbjct: 42  QYIVTDDKEGPDCELEKHIPD-LHVLISTPFHPAYVTAE----RIKKAKNL--KLLLTAG 94

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G +++D+ AA   G+ V    G    + AE      L   R  V     +  G ++   
Sbjct: 95  IGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN-VA 153

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
              +    L+G+T+G +GAGRIG    + +   F  NL+Y+D  Q              +
Sbjct: 154 GIAYRAYDLEGKTIGTVGAGRIGKLLLQRLK-PFGCNLLYHDRLQ--------------M 198

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
               E+    K    ++E+L + DVI ++  L + T  + NKE +  +KK  ++VN +RG
Sbjct: 199 APELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARG 258

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASASK 326
            +++  A+V+ ++   +     DV++ +P  K  P    M N  + PH +  + 
Sbjct: 259 AIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHP-WRYMPNQAMTPHTSGTTI 311

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  227 bits (582), Expect = 8e-73
 Identities = 80/318 (25%), Positives = 130/318 (40%), Gaps = 51/318 (16%)

Query: 29  WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG-----QLTEDWGETLFAAL- 82
             +LL + + +V       T+  V  + A + D  + ++      ++T      L   L 
Sbjct: 20  CFSLLQDHEVKV----FNNTVKGVGQLAARVAD-VEALVLIRERTRVTRQ----LLDRLP 70

Query: 83  -----SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARR 137
                S+ G            ++D+ A    G+ V    G      AEL  +L +AA RR
Sbjct: 71  KLKIISQTGRV----SRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRR 125

Query: 138 IVEADEFMRAG-------LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           I +    ++ G             PN  +G +LKGQT+G+ G G+IG   A      F M
Sbjct: 126 IPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYG-RAFGM 184

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
           N++                +G+       +   +  A S D +  ++DV+S+H  L+  T
Sbjct: 185 NVL---------------VWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDET 229

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-- 308
             +I    L  MK  A+ VN SR  +++E  +V  L +       +DVFE EP +  G  
Sbjct: 230 RSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEP-ILQGHT 288

Query: 309 LSEMKNAIVVPHIASASK 326
           L  M+N I  PHI    +
Sbjct: 289 LLRMENCICTPHIGYVER 306

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  222 bits (569), Expect = 5e-71
 Identities = 94/305 (30%), Positives = 144/305 (47%), Gaps = 46/305 (15%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAA---- 81
             +L +   +V      K  LS E++IA + D C+G+I     ++T    + + AA    
Sbjct: 40  RKILQDGGLQVVE----KQNLSKEELIAELQD-CEGLIVRSATKVTA---DVINAAEKLQ 91

Query: 82  -LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVE 140
            + RAG         G +NVD+ AA + GI V NTP   + + AEL   + +  AR+I +
Sbjct: 92  VVGRAG--------TGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQ 143

Query: 141 ADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200
           A   M+ G    W    F+G  L G+T+G++G GRIG   A  M + F M  I YD   +
Sbjct: 144 ATASMKDG---KWERKKFMGTELNGKTLGILGLGRIGREVATRM-QSFGMKTIGYDPIIS 199

Query: 201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260
               +   ++G          V       ++E+    D I++H  L  +T  L+N    A
Sbjct: 200 ---PEVSASFG----------VQQL---PLEEIWPLCDFITVHTPLLPSTTGLLNDNTFA 243

Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 320
             KK   +VNC+RG ++DE AL+  L+        LDVF +EP     L + +N I  PH
Sbjct: 244 QCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPH 303

Query: 321 IASAS 325
           +  AS
Sbjct: 304 LG-AS 307

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  218 bits (557), Expect = 1e-69
 Identities = 76/309 (24%), Positives = 141/309 (45%), Gaps = 50/309 (16%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAA---- 81
           I  L E+  +V+        +S E+++ +IG+  D ++     ++T+   + +       
Sbjct: 19  IKTLREKGIQVDY----MPEISKEELLNIIGN-YDIIVVRSRTKVTK---DVIEKGKKLK 70

Query: 82  -LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVE 140
            ++RAG        +G +N+D   A K  I V   PG  T++  EL   L +AAAR++  
Sbjct: 71  IIARAG--------IGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYT 122

Query: 141 ADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200
           +    ++G    +      G  L G+T+G++G GRIG+    +      M ++ YD+   
Sbjct: 123 SMALAKSG---IF--KKIEGLELAGKTIGIVGFGRIGTKVGIIA-NAMGMKVLAYDILDI 176

Query: 201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260
               +                       S++E+L+ +DVISLH  + K    +I+  +  
Sbjct: 177 ---REKAEKIN----------AKA---VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFE 220

Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG---LSEMKNAIV 317
            MK   I+VN SR   ++  AL++++K+  ++    DVF +EP  +     L + +  IV
Sbjct: 221 LMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIV 280

Query: 318 VPHIASASK 326
             HI + +K
Sbjct: 281 TTHIGAQTK 289

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  221 bits (565), Expect = 3e-68
 Identities = 85/294 (28%), Positives = 135/294 (45%), Gaps = 27/294 (9%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
            +     V            + ++A + +  D ++ +        + AA  +   K  + 
Sbjct: 20  ALGDQVEVRW----VDGPDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPKL--KIVAR 72

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
             VG +NVDV+AA   G+ V N P     + AE A +L LAA+R+I  AD  +R      
Sbjct: 73  AGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREH---T 129

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
           W  + F G  + G+TVGV+G GRIG   A+ +   F   ++ YD         +V+    
Sbjct: 130 WKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRI-AAFGAYVVAYD--------PYVSP--A 178

Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                G + ++       D++L  AD IS+H      T  LI+KE LA  K   I+VN +
Sbjct: 179 RAAQLGIELLSL------DDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAA 232

Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK 326
           RG ++DE AL + +    +   GLDVF  EP     L E+   +V PH+ +++ 
Sbjct: 233 RGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTA 286

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  210 bits (537), Expect = 7e-66
 Identities = 75/309 (24%), Positives = 124/309 (40%), Gaps = 52/309 (16%)

Query: 40  VEICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAA-----LSRAGGK 88
            E+ T          +   I D  D +I        +T+   E +  A     +  AG  
Sbjct: 39  HELITTSDKEGGNSVLDQHIPD-ADIIITTPFHPAYITK---ERIDKAKKLKLVVVAG-- 92

Query: 89  AFSNMAVGYNNVDVNAANKYG--IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
                 VG +++D++  N+ G  I+V    G    + AE      L   R  V A E + 
Sbjct: 93  ------VGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQII 146

Query: 147 AGLYDGWLPNLFV--GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE 204
                 W           ++G+T+  IGAGRIG      +V  F    + Y  YQA   +
Sbjct: 147 NH---DWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLV-PFNPKELLYYDYQALPKD 202

Query: 205 KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264
                         E+ V  +R  +++E++ +AD+++++  L   T  LINKE L+  KK
Sbjct: 203 A-------------EEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKK 249

Query: 265 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKN-----AIV 317
            A LVN +RG +     +   L+   +   G DV+  +P  K  P   +M+N       +
Sbjct: 250 GAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHP-WRDMRNKYGAGNAM 308

Query: 318 VPHIASASK 326
            PH +  + 
Sbjct: 309 TPHYSGTTL 317

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  211 bits (539), Expect = 2e-65
 Identities = 89/299 (29%), Positives = 129/299 (43%), Gaps = 51/299 (17%)

Query: 41  EICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAALS------RAGGKAF 90
              T     L   D+I  I      +      QLTE+    +FAA +             
Sbjct: 38  TNVTHLPKALDKADLIKAISS-AHIIGIRSRTQLTEE----IFAAANRLIAVGCFS---- 88

Query: 91  SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
               VG N V++ AA K GI V N P   T + AEL     +   RRI        AG  
Sbjct: 89  ----VGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAG-- 142

Query: 151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
            GW         ++G+T+G++G G IGS    +  E   M + YYD     +L+      
Sbjct: 143 -GWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLA-ESLGMTVRYYDTS--DKLQY----- 193

Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
                 N +       A+S+DE+L+ +DV+SLH    K+T  LI + +L  MKK A L+N
Sbjct: 194 -----GNVKP------AASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLIN 242

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-----LSEMKNAIVVPHI-AS 323
            +RG  +D  AL + L++  +    +DVF  EP          L  ++N I+ PHI  S
Sbjct: 243 NARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGS 301

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  210 bits (537), Expect = 2e-65
 Identities = 76/296 (25%), Positives = 117/296 (39%), Gaps = 51/296 (17%)

Query: 44  TQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAALS------RAGGKAFSNM 93
              K  L  E +   I D    +       LTED    +  A                  
Sbjct: 30  EFHKGALDDEQLKESIRD-AHFIGLRSRTHLTED----VINAAEKLVAIGAFA------- 77

Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
            +G N VD++AA K GI V N P   T + AEL     L   R + EA+     G     
Sbjct: 78  -IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG---VG 133

Query: 154 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 213
                     +G+ +G+IG G IG+    +  E   M + +YD+     L          
Sbjct: 134 NKLAAGSFEARGKKLGIIGYGHIGTQLGILA-ESLGMYVYFYDIENKLPLG--------- 183

Query: 214 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273
              N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L+N SR
Sbjct: 184 ---NATQVQ------HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASR 234

Query: 274 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-----LSEMKNAIVVPHI-AS 323
           G V+D  AL + L    +    +DVF  EP          L+E  N ++ PHI  S
Sbjct: 235 GTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGS 290

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  194 bits (494), Expect = 5e-60
 Identities = 60/286 (20%), Positives = 103/286 (36%), Gaps = 38/286 (13%)

Query: 48  TILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG--KAFSNMAVGYNNVDVNAA 105
           T      + A   D+ + + G         L   L+R     K    ++ G + + + A 
Sbjct: 26  TFKDAAAVTAADYDQIEVMYG-----NHPLLKTILARPTNQLKFVQVISAGVDYLPLKAL 80

Query: 106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG 165
              G+ V NT G+  +  +E   +  L+  R    A    R              + L G
Sbjct: 81  QAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGA---RQWALPMTTSTLTG 137

Query: 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
           Q + + G G+IG + A        M++I  +       + F                   
Sbjct: 138 QQLLIYGTGQIGQSLAAKA-SALGMHVIGVN-TTGHPADHFHETVA-------------- 181

Query: 226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEH 285
             ++  + L  A+ I     L  TT+HL + E     K++ +L+N  RGP +D  AL+  
Sbjct: 182 -FTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTA 240

Query: 286 LKQNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIASAS 325
           L  + +    LDV E EP     L          + ++ PHI+   
Sbjct: 241 LDHHQLSMAALDVTEPEP-----LPTDHPLWQRDDVLITPHISGQI 281

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  194 bits (496), Expect = 1e-59
 Identities = 65/236 (27%), Positives = 97/236 (41%), Gaps = 46/236 (19%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G +++D++   + GIA  + PG       +      LA A                   
Sbjct: 67  IGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE------------------ 108

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
                G  L  +T GV+GAG++G     ++  G    ++  D  +  R            
Sbjct: 109 ---VRGADLAERTYGVVGAGQVGGRLVEVL-RGLGWKVLVCDPPRQAR------------ 152

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLH----PVLDKTTYHLINKERLATMKKEAILVN 270
                + V      S++ +L EADVISLH       +  T HL+++ RLA ++    LVN
Sbjct: 153 -EPDGEFV------SLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVN 205

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK 326
            SRG V+D  AL   L+      V LDV+E EP   P L   +  I  PHIA  S 
Sbjct: 206 ASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPEL-AARCLIATPHIAGYSL 260

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  190 bits (485), Expect = 5e-58
 Identities = 60/232 (25%), Positives = 91/232 (39%), Gaps = 46/232 (19%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
            G ++VD     + GI     PG       E   S  L  A R                 
Sbjct: 70  AGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER----------------- 112

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
                G  L+ +T+G++G G +GS     + E   +  +  D  +A R            
Sbjct: 113 ----DGFSLRDRTIGIVGVGNVGSRLQTRL-EALGIRTLLCDPPRAAR------------ 155

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLH----PVLDKTTYHLINKERLATMKKEAILVN 270
             +           ++DE+++EADV++ H          T HL ++  +  +K  AIL+N
Sbjct: 156 -GDEGDFR------TLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILIN 208

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322
             RGPV+D  AL+  L       V LDV+E EP +   L E  + I   HIA
Sbjct: 209 ACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVD-IGTSHIA 259

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  120 bits (302), Expect = 1e-31
 Identities = 54/224 (24%), Positives = 86/224 (38%), Gaps = 35/224 (15%)

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV 168
              + N  G+     +E      L+  R++    E  +  L   W         LKG+T+
Sbjct: 89  DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRL---WQS--HPYQGLKGRTL 143

Query: 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228
            ++G G IG   A    + F M ++            F   Y                  
Sbjct: 144 LILGTGSIGQHIAHTG-KHFGMKVLGVS-RSGRERAGFDQVYQ---------------LP 186

Query: 229 SMDEVLREAD-VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
           +++++L +AD ++S+ P   + T+HL    R    K  AIL N  RG  I+E  L+  L+
Sbjct: 187 ALNKMLAQADVIVSVLP-ATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALR 245

Query: 288 QNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIASAS 325
              +    LDVFE EP     L          N I+ PH ++ S
Sbjct: 246 TGKLGMAVLDVFEQEP-----LPADSPLWGQPNLIITPHNSAYS 284

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  113 bits (285), Expect = 2e-29
 Identities = 49/251 (19%), Positives = 82/251 (32%), Gaps = 41/251 (16%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEA 141
           KA   +  G + +         +   + P        +     E A S  L   RR  + 
Sbjct: 61  KAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDY 120

Query: 142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201
                  L   W P        +  +VG++GAG +G+  A  +   +   L  +      
Sbjct: 121 QALKNQAL---WKP--LPEYTREEFSVGIMGAGVLGAKVAESLQ-AWGFPLRCWS-RSRK 173

Query: 202 RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLA 260
                 +  G                  +   L +   +I+L P     T  +IN E L 
Sbjct: 174 SWPGVESYVG---------------REELRAFLNQTRVLINLLP-NTAQTVGIINSELLD 217

Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSE------MKN 314
            +   A ++N +RG  + E  L+  L    +    LDVF  EP     L +         
Sbjct: 218 QLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEP-----LPQESPLWRHPR 272

Query: 315 AIVVPHIASAS 325
             + PHIA+ +
Sbjct: 273 VAMTPHIAAVT 283

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 65.4 bits (159), Expect = 3e-12
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 18/134 (13%)

Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           + G  V V+G GR+G + AR         +                     +   G +P 
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFA-ALGAKVKVGARESDLLAR---------IAEMGMEPF 202

Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
              +     + LR+ DV             ++    LA M     +++ +  P   +   
Sbjct: 203 HISK---AAQELRDVDVCINT-----IPALVVTANVLAEMPSHTFVIDLASKPGGTDFRY 254

Query: 283 VEHLKQNPMFRVGL 296
            E      +   GL
Sbjct: 255 AEKRGIKALLVPGL 268

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	328
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	100.0
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.96
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.94
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.91
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.9
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.81
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.79
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.77
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.77
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.76
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.74
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.7
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.62
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.4
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.39
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.34
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.29
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.28
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.26
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.24
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.24
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.22
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.22
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.2
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.18
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.18
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.17
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.16
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.14
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.13
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.13
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.13
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.12
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.12
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.11
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.11
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.11
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.08
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.05
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.99
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	98.98
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	98.98
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	98.97
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	98.96
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	98.94
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	98.91
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.89
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.88
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	98.88
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.38
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	98.86
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.83
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	98.83
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.81
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.81
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.81
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.8
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	98.79
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	98.78
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	98.77
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.77
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.75
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.71
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.68
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.66
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.65
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.65
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.64
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.62
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.59
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.58
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.57
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.53
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.53
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.53
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.47
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.42
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.41
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.4
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.4
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.39
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.38
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.36
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.36
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.36
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.36
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.35
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.34
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.33
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.33
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.29
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.28
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.25
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.25
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.24
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.23
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.23
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.22
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.2
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.19
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.18
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.17
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.16
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.15
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.14
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.12
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.12
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.1
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.1
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.1
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.1
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.09
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.09
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.08
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.07
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.05
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.01
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.99
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	97.98
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.96
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	97.94
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.89
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.89
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	97.88
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.88
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.87
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.87
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.86
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	97.84
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.81
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.79
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.79
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.7
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.68
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.67
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.65
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.64
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.63
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.63
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.61
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.58
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.57
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.56
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.54
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.52
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.52
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.49
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.48
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.46
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.43
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.42
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.4
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.39
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.39
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.37
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.37
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.35
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.34
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.34
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.31
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.3
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.3
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.29
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.28
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.28
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.28
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.28
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.27
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.26
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.26
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.25
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.24
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	97.22
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.22
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.21
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.2
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	97.19
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.18
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.18
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	97.14
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	97.13
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.11
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	97.11
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.09
1ydw_A	362	AX110P-like protein; structural genomics, protein	97.09
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.09
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.09
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.08
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.08
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.07
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.05
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.05
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.04
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	97.04
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.01
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	97.0
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.98
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	96.94
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.92
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	96.91
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.89
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	96.87
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	96.87
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.86
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.86
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	96.85
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.83
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	96.83
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.82
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	96.82
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.8
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	96.8
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	96.76
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.75
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.75
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	96.74
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	96.71
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	96.71
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	96.7
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.66
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.65
4had_A	350	Probable oxidoreductase protein; structural genomi	96.64
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.63
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.6
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.6
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.58
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.55
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	96.54
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	96.53
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	96.53
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	96.53
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	96.5
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	96.5
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.5
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	96.47
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	96.45
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	96.43
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.42
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.41
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.4
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.39
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.38
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.38
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	96.38
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.37
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.37
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	96.34
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.33
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	96.32
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.31
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	96.31
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.31
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.3
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	96.29
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.29
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.28
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	96.27
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	96.26
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	96.25
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.24
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.23
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.22
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.22
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.22
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.21
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	96.19
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	96.19
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.18
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	96.17
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.14
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.14
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.12
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	96.12
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.11
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.09
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.09
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	96.08
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.08
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	96.08
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.07
3on5_A	362	BH1974 protein; structural genomics, joint center	96.07
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	96.06
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	96.05
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.04
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.04
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.01
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.01
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.01
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.01
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	96.0
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	95.98
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.98
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.98
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	95.97
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.97
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.96
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.93
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.92
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	95.92
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.91
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.9
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.9
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	95.88
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	95.87
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	95.87
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.86
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.85
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	95.82
4h3v_A	390	Oxidoreductase domain protein; structural genomics	95.82
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.82
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.81
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.8
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.79
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	95.78
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.77
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.74
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	95.74
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	95.73
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	95.72
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.71
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	95.7
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	95.69
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	95.69
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	95.68
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	95.68
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.65
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	95.63
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	95.63
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	95.62
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	95.62
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.6
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	95.6
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	95.59
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.58
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.55
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	95.53
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	95.51
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.5
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.49
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	95.48
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.48
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	95.46
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.45
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.42
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.41
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	95.4
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.4
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	95.37
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	95.35
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	95.32
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	95.3
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	95.29
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	95.28
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	95.28
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.26
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	95.26
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	95.24
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	95.23
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.2
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	95.17
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.16
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	95.14
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.13
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.13
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.13
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	95.12
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	95.1
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	95.09
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	95.09
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	95.08
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	95.07
3gms_A	340	Putative NADPH:quinone reductase; structural genom	95.05
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	95.04
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	95.03
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	95.02
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	94.99
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	94.99
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.96
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	94.96
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	94.95
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	94.91
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.89
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	94.89
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	94.88
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	94.88
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	94.86
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	94.84
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	94.8
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	94.79
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.74
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	94.74
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	94.73
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	94.71
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	94.69
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	94.69
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	94.66
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.64
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	94.63
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	94.61
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	94.6
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	94.6
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	94.58
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	94.57
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	94.57
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	94.56
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	94.55
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	94.54
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	94.51
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	94.5
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	94.45
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	94.44
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	94.42
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.41
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	94.39
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	94.38
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	94.35
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	94.33
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	94.21
1lnq_A	336	MTHK channels, potassium channel related protein;	94.2
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	94.12
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	94.07
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	94.01
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	94.0
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	93.97
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	93.9
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	93.89
3q98_A	399	Transcarbamylase; rossmann fold, transferase; 2.00	93.89
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	93.86
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	93.83
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	93.8
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	93.79
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	93.75
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	93.75
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	93.73
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	93.68
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	93.64
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	93.63
3kzn_A	359	Aotcase, N-acetylornithine carbamoyltransferase; t	93.62
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	93.52
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	93.51
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	93.51
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	93.48
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	93.46
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	93.46
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	93.43
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	93.42
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	93.39
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	93.39
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	93.39
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	93.33
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	93.31
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	93.19
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	93.19
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	93.19
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	93.18
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	93.15
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	93.13
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	93.04
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	93.03
1xq6_A	253	Unknown protein; structural genomics, protein stru	93.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	92.93
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	92.91
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	92.88
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	92.82

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=2.5e-70  Score=521.51  Aligned_cols=292  Identities=28%  Similarity=0.471  Sum_probs=259.6

Q ss_pred             CCCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHh-hccCCceE
Q 020301           12 PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAF   90 (328)
Q Consensus        12 ~~~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~l~~k~i   90 (328)
                      +++++|||++.++++. ..+.|++. +++++.. .+...+++++.+.+. ++|+++++..+++++++++++ |+|  |+|
T Consensus        25 ~~~~~kvlv~~~~~~~-~~~~l~~~-~~v~~~~-~~~~~~~~~l~~~~~-~~d~li~~~~~~i~~~~l~~~~~~L--k~I   98 (345)
T 4g2n_A           25 THPIQKAFLCRRFTPA-IEAELRQR-FDLEVNL-EDTVLTPSGIASRAH-GAEVLFVTATEAITAEVIRKLQPGL--KTI   98 (345)
T ss_dssp             --CCCEEEESSCCCHH-HHHHHHHH-SEEEECT-TCCCCCHHHHHHHTT-TCSEEEECTTSCBCHHHHHHTTTTC--CEE
T ss_pred             cCCCCEEEEeCCCCHH-HHHHHHcc-CCEEEec-CCCCCCHHHHHHHhc-CCeEEEEeCCCCCCHHHHHhhcCCc--eEE
Confidence            3568999999999875 45777765 5776533 344578899999887 799999987788999999998 676  999


Q ss_pred             EEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEE
Q 020301           91 SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV  170 (328)
Q Consensus        91 ~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgI  170 (328)
                      ++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..|.+....|++|+|+|+||
T Consensus        99 ~~~~~G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGI  178 (345)
T 4g2n_A           99 ATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGI  178 (345)
T ss_dssp             EESSSCCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEE
T ss_pred             EEcCCcccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999988875545689999999999


Q ss_pred             EecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhh
Q 020301          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (328)
Q Consensus       171 iG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t  250 (328)
                      ||+|+||+++|+++ ++|||+|++|||++.+....           .     +.....++++++++||+|++|+|+|++|
T Consensus       179 IGlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~~~-----------~-----g~~~~~~l~ell~~sDvV~l~~Plt~~T  241 (345)
T 4g2n_A          179 FGMGRIGRAIATRA-RGFGLAIHYHNRTRLSHALE-----------E-----GAIYHDTLDSLLGASDIFLIAAPGRPEL  241 (345)
T ss_dssp             ESCSHHHHHHHHHH-HTTTCEEEEECSSCCCHHHH-----------T-----TCEECSSHHHHHHTCSEEEECSCCCGGG
T ss_pred             EEeChhHHHHHHHH-HHCCCEEEEECCCCcchhhh-----------c-----CCeEeCCHHHHHhhCCEEEEecCCCHHH
Confidence            99999999999997 79999999999986432110           0     1223359999999999999999999999


Q ss_pred             hccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCCCc
Q 020301          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       251 ~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~  326 (328)
                      +++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+.++|||++|||++|||+||+|.
T Consensus       242 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~  317 (345)
T 4g2n_A          242 KGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATH  317 (345)
T ss_dssp             TTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBH
T ss_pred             HHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCH
Confidence            9999999999999999999999999999999999999999999999999999977789999999999999999985

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=1.1e-69  Score=515.86  Aligned_cols=282  Identities=30%  Similarity=0.440  Sum_probs=240.5

Q ss_pred             eEEEEeCCCCch-H-HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEc
Q 020301           16 YRVVSTKPMPGT-R-WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (328)
Q Consensus        16 ~~vlv~~~~~~~-~-~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (328)
                      ||||++...... . +.+.|++.+  +++........+++++.     ++|+++++..+++++++++++|+|  |+|++.
T Consensus         1 Mkil~~~~~~~~~p~~~e~l~~~~--~~~~~~~~~~~~~~~l~-----~ad~i~v~~~~~i~~~~l~~~p~L--k~I~~~   71 (334)
T 3kb6_A            1 MNVLFTSVPQEDVPFYQEALKDLS--LKIYTTDVSKVPENELK-----KAELISVFVYDKLTEELLSKMPRL--KLIHTR   71 (334)
T ss_dssp             -CEEECSCCTTHHHHHHHHTTTSC--EEECSSCGGGSCHHHHH-----HCSEEEECTTSCBCHHHHHTCTTC--CEEEES
T ss_pred             CEEEEeCCCcccCHHHHHHHHhCC--cEEEeCCcccCCHHHhc-----CCCEEEEeCCCCCCHHHHhcCCCC--cEEEEC
Confidence            688887533222 2 334455443  44433332334444443     689999988889999999999987  999999


Q ss_pred             cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEec
Q 020301           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (328)
Q Consensus        94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~  173 (328)
                      |+|+||||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..|..  ..+++++|+|+||||+
T Consensus        72 ~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~--~~~~~l~g~tvGIiG~  149 (334)
T 3kb6_A           72 SVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSE--ILARELNRLTLGVIGT  149 (334)
T ss_dssp             SSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGG--GCBCCGGGSEEEEECC
T ss_pred             CcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhccccccccccccccccccc--cccceecCcEEEEECc
Confidence            99999999999999999999999999999999999999999999999999999999866543  4678999999999999


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhcc
Q 020301          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (328)
Q Consensus       174 G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~l  253 (328)
                      |+||+.+|+++ ++|||+|++|||+......+           .+      ..+.+++|++++||||++|||+|++|+||
T Consensus       150 G~IG~~va~~~-~~fg~~v~~~d~~~~~~~~~-----------~~------~~~~~l~ell~~sDivslh~Plt~~T~~l  211 (334)
T 3kb6_A          150 GRIGSRVAMYG-LAFGMKVLCYDVVKREDLKE-----------KG------CVYTSLDELLKESDVISLHVPYTKETHHM  211 (334)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECSSCCHHHHH-----------TT------CEECCHHHHHHHCSEEEECCCCCTTTTTC
T ss_pred             chHHHHHHHhh-cccCceeeecCCccchhhhh-----------cC------ceecCHHHHHhhCCEEEEcCCCChhhccC
Confidence            99999999996 89999999999987543211           01      13479999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCC-C---------------CcccCCCeEE
Q 020301          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-P---------------GLSEMKNAIV  317 (328)
Q Consensus       254 i~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~---------------~L~~~~nvil  317 (328)
                      ||++.|++||+|++|||+|||++|||+||++||++|+|+||+||||++||++. +               |||++|||++
T Consensus       212 i~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nvil  291 (334)
T 3kb6_A          212 INEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVII  291 (334)
T ss_dssp             BCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEEE
T ss_pred             cCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccccchhhccCCCEEE
Confidence            99999999999999999999999999999999999999999999999999631 2               6899999999


Q ss_pred             cCCCCCCCc
Q 020301          318 VPHIASASK  326 (328)
Q Consensus       318 TPHia~~t~  326 (328)
                      |||+||+|.
T Consensus       292 TPHia~~T~  300 (334)
T 3kb6_A          292 TPHIAYYTD  300 (334)
T ss_dssp             CCSCTTCBH
T ss_pred             CCchhhChH
Confidence            999999985

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=1.3e-67  Score=501.05  Aligned_cols=290  Identities=30%  Similarity=0.458  Sum_probs=256.9

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEc
Q 020301           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (328)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (328)
                      +++|||++.++++. ..+.|++.+ ++.+. ..+...+++++.+.+. ++|+++++...++++++++++|+|  |+|++.
T Consensus         1 m~~kvlv~~~~~~~-~~~~l~~~~-~v~~~-~~~~~~~~~~~~~~~~-~~d~~i~~~~~~i~~~~l~~~~~L--k~I~~~   74 (330)
T 4e5n_A            1 MLPKLVITHRVHEE-ILQLLAPHC-ELITN-QTDSTLTREEILRRCR-DAQAMMAFMPDRVDADFLQACPEL--RVIGCA   74 (330)
T ss_dssp             CCCEEEECSCCCHH-HHHHHTTTC-EEECC-CSSSCCCHHHHHHHHT-TCSEEEECTTCCBCHHHHHHCTTC--CEEEES
T ss_pred             CCCEEEEecCCCHH-HHHHHHhCC-eEEEe-cCCCCCCHHHHHHHhC-CCeEEEEeCCCCCCHHHHhhCCCC--cEEEEC
Confidence            36899999999865 467887764 66542 2334568899998887 799999977789999999999987  999999


Q ss_pred             cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEec
Q 020301           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (328)
Q Consensus        94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~  173 (328)
                      |+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..|.+ ...|++|+|+|+||||+
T Consensus        75 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~-~~~~~~l~g~tvGIIG~  153 (330)
T 4e5n_A           75 LKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP-RFYGTGLDNATVGFLGM  153 (330)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCS-CCCCCCSTTCEEEEECC
T ss_pred             CCcccccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCc-cccCCccCCCEEEEEee
Confidence            99999999999999999999999999999999999999999999999999999999988876 34578999999999999


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhcc
Q 020301          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (328)
Q Consensus       174 G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~l  253 (328)
                      |+||+.+|+++ ++|||+|++|||++......  ..+       +     . ...++++++++||+|++|+|+|++|+++
T Consensus       154 G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~--~~~-------g-----~-~~~~l~ell~~aDvV~l~~P~t~~t~~l  217 (330)
T 4e5n_A          154 GAIGLAMADRL-QGWGATLQYHEAKALDTQTE--QRL-------G-----L-RQVACSELFASSDFILLALPLNADTLHL  217 (330)
T ss_dssp             SHHHHHHHHHT-TTSCCEEEEECSSCCCHHHH--HHH-------T-----E-EECCHHHHHHHCSEEEECCCCSTTTTTC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCCCCcHhHH--Hhc-------C-----c-eeCCHHHHHhhCCEEEEcCCCCHHHHHH
Confidence            99999999996 89999999999987321110  011       1     1 2358999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCC-------CCC-CCCcccCCCeEEcCCCCCCC
Q 020301          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE-------PYM-KPGLSEMKNAIVVPHIASAS  325 (328)
Q Consensus       254 i~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~E-------P~~-~~~L~~~~nvilTPHia~~t  325 (328)
                      |+++.|++||+|++|||+|||+++|++||++||++|+|+||+||||++|       |++ ++|||++|||++|||+||+|
T Consensus       218 i~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~t  297 (330)
T 4e5n_A          218 VNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAV  297 (330)
T ss_dssp             BCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTCC
T ss_pred             hCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCCh
Confidence            9999999999999999999999999999999999999999999999999       964 57999999999999999998


Q ss_pred             c
Q 020301          326 K  326 (328)
Q Consensus       326 ~  326 (328)
                      .
T Consensus       298 ~  298 (330)
T 4e5n_A          298 R  298 (330)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=4e-67  Score=508.61  Aligned_cols=288  Identities=30%  Similarity=0.396  Sum_probs=252.1

Q ss_pred             eCCCCCeEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCc
Q 020301           10 WNPNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGK   88 (328)
Q Consensus        10 ~~~~~~~~vlv~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k   88 (328)
                      +-|++++|||+++++++. ..+.|++.++ +++...   ...+++++.+.+. ++|+++++..+++++++++++|+|  |
T Consensus        10 ~~~~~~~kIl~~~~i~~~-~~~~l~~~g~~~v~~~~---~~~~~~~l~~~~~-~~d~l~v~~~~~i~~~~l~~~p~L--k   82 (416)
T 3k5p_A           10 SLSRDRINVLLLEGISQT-AVEYFKSSGYTNVTHLP---KALDKADLIKAIS-SAHIIGIRSRTQLTEEIFAAANRL--I   82 (416)
T ss_dssp             --CGGGSCEEECSCCCHH-HHHHHHHTTCCCEEECS---SCCCHHHHHHHHT-TCSEEEECSSCCBCHHHHHHCTTC--C
T ss_pred             CCCCCCcEEEEECCCCHH-HHHHHHHCCCcEEEECC---CCCCHHHHHHHcc-CCEEEEEcCCCCCCHHHHHhCCCc--E
Confidence            457778999999999864 4678888887 776532   3468899999887 799998888889999999999987  9


Q ss_pred             eEEEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEE
Q 020301           89 AFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV  168 (328)
Q Consensus        89 ~i~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tv  168 (328)
                      +|+++|+|+||||+++|+++||.|+|+||+|+++||||++++||+++|++..+++.+++|.|..+   ...+.+++|||+
T Consensus        83 ~I~~~~~G~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~---~~~~~el~gktv  159 (416)
T 3k5p_A           83 AVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKT---AIGSREVRGKTL  159 (416)
T ss_dssp             EEEECSSCCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC---CTTCCCSTTCEE
T ss_pred             EEEECccccCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhccccccc---CCCCccCCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999988643   234689999999


Q ss_pred             EEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCCh
Q 020301          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK  248 (328)
Q Consensus       169 gIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~  248 (328)
                      ||||+|+||+++|+++ ++|||+|++||++....                  ........++++++++||+|++|+|+|+
T Consensus       160 GIIGlG~IG~~vA~~l-~~~G~~V~~yd~~~~~~------------------~~~~~~~~sl~ell~~aDvV~lhvPlt~  220 (416)
T 3k5p_A          160 GIVGYGNIGSQVGNLA-ESLGMTVRYYDTSDKLQ------------------YGNVKPAASLDELLKTSDVVSLHVPSSK  220 (416)
T ss_dssp             EEECCSHHHHHHHHHH-HHTTCEEEEECTTCCCC------------------BTTBEECSSHHHHHHHCSEEEECCCC--
T ss_pred             EEEeeCHHHHHHHHHH-HHCCCEEEEECCcchhc------------------ccCcEecCCHHHHHhhCCEEEEeCCCCH
Confidence            9999999999999996 79999999999875321                  0012245799999999999999999999


Q ss_pred             hhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCC-----CCcccCCCeEEcCCCCC
Q 020301          249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-----PGLSEMKNAIVVPHIAS  323 (328)
Q Consensus       249 ~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-----~~L~~~~nvilTPHia~  323 (328)
                      +|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++.     +|||++|||++|||+||
T Consensus       221 ~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~  300 (416)
T 3k5p_A          221 STSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGG  300 (416)
T ss_dssp             ---CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTT
T ss_pred             HHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999753     58999999999999999


Q ss_pred             CCc
Q 020301          324 ASK  326 (328)
Q Consensus       324 ~t~  326 (328)
                      +|.
T Consensus       301 ~T~  303 (416)
T 3k5p_A          301 STE  303 (416)
T ss_dssp             CCH
T ss_pred             CCH
Confidence            985

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.7e-67  Score=501.05  Aligned_cols=285  Identities=29%  Similarity=0.428  Sum_probs=223.3

Q ss_pred             CCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEE
Q 020301           13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (328)
Q Consensus        13 ~~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~   92 (328)
                      ++++|||++.++++. ..+.|++ ++++.....   ..+++++.+.+. ++|+++++..+++++++++++|+|  |+|++
T Consensus        28 ~~~~~vl~~~~~~~~-~~~~L~~-~~~v~~~~~---~~~~~~~~~~~~-~~d~li~~~~~~i~~~~l~~~p~L--k~I~~   99 (340)
T 4dgs_A           28 NVKPDLLLVEPMMPF-VMDELQR-NYSVHRLYQ---AADRPALEAALP-SIRAVATGGGAGLSNEWMEKLPSL--GIIAI   99 (340)
T ss_dssp             -----CEECSCCCHH-HHHTHHH-HSCCEETTC---GGGHHHHHHHGG-GCCEEEEETTTCBCHHHHHHCSSC--CEEEE
T ss_pred             CCCCEEEEECCCCHH-HHHHHhc-CCcEEEeCC---CCCHHHHHHHhC-CcEEEEEcCCCCCCHHHHhhCCCC--EEEEE
Confidence            467899999999875 4577765 456654321   235778887775 799999987788999999999987  99999


Q ss_pred             ccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEe
Q 020301           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (328)
Q Consensus        93 ~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG  172 (328)
                      .|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..+.. ...+++|+|+|+||||
T Consensus       100 ~g~G~d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~-~~~~~~l~gktiGIIG  178 (340)
T 4dgs_A          100 NGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQ-LPLGHSPKGKRIGVLG  178 (340)
T ss_dssp             ESSCCTTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC-------CCCCCCTTCEEEEEC
T ss_pred             CCCCccccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccC-cCccccccCCEEEEEC
Confidence            999999999999999999999999999999999999999999999999999999999865311 1246899999999999


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhc
Q 020301          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (328)
Q Consensus       173 ~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~  252 (328)
                      +|+||+.+|+++ ++|||+|++|||++...                   .......++++++++||+|++|+|+|++|++
T Consensus       179 lG~IG~~vA~~l-~~~G~~V~~~dr~~~~~-------------------~~~~~~~sl~ell~~aDvVil~vP~t~~t~~  238 (340)
T 4dgs_A          179 LGQIGRALASRA-EAFGMSVRYWNRSTLSG-------------------VDWIAHQSPVDLARDSDVLAVCVAASAATQN  238 (340)
T ss_dssp             CSHHHHHHHHHH-HTTTCEEEEECSSCCTT-------------------SCCEECSSHHHHHHTCSEEEECC--------
T ss_pred             CCHHHHHHHHHH-HHCCCEEEEEcCCcccc-------------------cCceecCCHHHHHhcCCEEEEeCCCCHHHHH
Confidence            999999999997 79999999999986431                   1122346999999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCCCc
Q 020301          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       253 li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~  326 (328)
                      +++++.|+.||+|++|||+|||++||++||++||++|+|+||+||||++||++++|||++|||++|||+||+|.
T Consensus       239 li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~~~L~~~~nvilTPHia~~t~  312 (340)
T 4dgs_A          239 IVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATV  312 (340)
T ss_dssp             --CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSSSSCCSHHHHSSSEEECSSCSSCCH
T ss_pred             HhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCccchhhCCCEEEcCcCCcCCH
Confidence            99999999999999999999999999999999999999999999999999998889999999999999999985

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=2.7e-66  Score=503.77  Aligned_cols=286  Identities=26%  Similarity=0.364  Sum_probs=246.4

Q ss_pred             CCCCeEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceE
Q 020301           12 PNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAF   90 (328)
Q Consensus        12 ~~~~~~vlv~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i   90 (328)
                      |+++|||++++++++. ..+.|++.++ ++++..   ...+++++.+.+. ++|++++++.+++++++++++|+|  |+|
T Consensus         1 ~~~~~kil~~~~~~~~-~~~~l~~~~~~~v~~~~---~~~~~~~l~~~~~-~~d~l~~~~~~~~~~~~l~~~~~L--k~I   73 (404)
T 1sc6_A            1 EKDKIKFLLVEGVHQK-ALESLRAAGYTNIEFHK---GALDDEQLKESIR-DAHFIGLRSRTHLTEDVINAAEKL--VAI   73 (404)
T ss_dssp             CCSSCCEEECSCCCHH-HHHHHHHTTCCCEEECS---SCCCHHHHHHHTT-SCSEEEECSSCCBCHHHHHHCSSC--CEE
T ss_pred             CCCceEEEEeCCCCHH-HHHHHHhCCCcEEEEcC---CCCCHHHHHHHhc-CCeEEEEcCCCCCCHHHHhhCCCC--cEE
Confidence            4567899999888754 4678887777 676532   2467899988887 799999888789999999999987  999


Q ss_pred             EEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEE
Q 020301           91 SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV  170 (328)
Q Consensus        91 ~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgI  170 (328)
                      +++|+|+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++.+++.+++|.|..+   .+.+.+++|||+||
T Consensus        74 ~~~~~G~d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~---~~~~~el~gktlGi  150 (404)
T 1sc6_A           74 GAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKL---AAGSFEARGKKLGI  150 (404)
T ss_dssp             EECSSCCTTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC--------CCCSTTCEEEE
T ss_pred             EECCcccCccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCcccc---CCCccccCCCEEEE
Confidence            999999999999999999999999999999999999999999999999999999999988533   23578999999999


Q ss_pred             EecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhh
Q 020301          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (328)
Q Consensus       171 iG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t  250 (328)
                      ||+|+||+.+|+++ ++|||+|++|||+....              .+    ......++++++++||+|++|+|+|++|
T Consensus       151 IGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~--------------~~----~~~~~~~l~ell~~aDvV~l~~P~t~~t  211 (404)
T 1sc6_A          151 IGYGHIGTQLGILA-ESLGMYVYFYDIENKLP--------------LG----NATQVQHLSDLLNMSDVVSLHVPENPST  211 (404)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSSCCCC--------------CT----TCEECSCHHHHHHHCSEEEECCCSSTTT
T ss_pred             EeECHHHHHHHHHH-HHCCCEEEEEcCCchhc--------------cC----CceecCCHHHHHhcCCEEEEccCCChHH
Confidence            99999999999996 79999999999975321              01    1223458999999999999999999999


Q ss_pred             hccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-----CCCcccCCCeEEcCCCCCCC
Q 020301          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-----KPGLSEMKNAIVVPHIASAS  325 (328)
Q Consensus       251 ~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-----~~~L~~~~nvilTPHia~~t  325 (328)
                      +++|+++.|++||+|++|||+|||+++|++||++||++|+++||+||||++||++     ++|||++|||++|||+|++|
T Consensus       212 ~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T  291 (404)
T 1sc6_A          212 KNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGST  291 (404)
T ss_dssp             TTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCS
T ss_pred             HHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999975     36999999999999999998


Q ss_pred             c
Q 020301          326 K  326 (328)
Q Consensus       326 ~  326 (328)
                      .
T Consensus       292 ~  292 (404)
T 1sc6_A          292 Q  292 (404)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=3.1e-66  Score=489.46  Aligned_cols=280  Identities=23%  Similarity=0.268  Sum_probs=244.6

Q ss_pred             CCeEEEEeCCCCchHHHHHH-HhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEE
Q 020301           14 GKYRVVSTKPMPGTRWINLL-IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (328)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~   92 (328)
                      ++|||+++.+..+ .|.+.| ++..+++++....    +++++.+.+. ++|++++..  ++++++++++|+|  |+|++
T Consensus         4 ~~mkili~~~~~~-~~~~~L~~~~~p~~~~~~~~----~~~~~~~~~~-~ad~li~~~--~~~~~~l~~~~~L--k~I~~   73 (324)
T 3hg7_A            4 SQRTLLLLSQDNA-HYERLLKAAHLPHLRILRAD----NQSDAEKLIG-EAHILMAEP--ARAKPLLAKANKL--SWFQS   73 (324)
T ss_dssp             CCEEEEEESTTHH-HHHHHHHHSCCTTEEEEECS----SHHHHHHHGG-GCSEEEECH--HHHGGGGGGCTTC--CEEEE
T ss_pred             cccEEEEecCCCH-HHHHHHhhccCCCeEEEeCC----ChhHHHHHhC-CCEEEEECC--CCCHHHHhhCCCc--eEEEE
Confidence            4599999999875 578889 6666677665432    4677777787 799999853  4567788889987  99999


Q ss_pred             ccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEe
Q 020301           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (328)
Q Consensus        93 ~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG  172 (328)
                      .|+|+|+||++++++ ||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..+     .+.+++|+|+||||
T Consensus        74 ~~~G~d~id~~~~~~-gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~-----~~~~l~g~tvGIIG  147 (324)
T 3hg7_A           74 TYAGVDVLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSH-----PYQGLKGRTLLILG  147 (324)
T ss_dssp             SSSCCGGGSCTTSCC-SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-----CCCCSTTCEEEEEC
T ss_pred             CCCCCCccChHHHhC-CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCC-----CCcccccceEEEEE
Confidence            999999999998764 999999999999999999999999999999999999999987642     35799999999999


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhc
Q 020301          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (328)
Q Consensus       173 ~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~  252 (328)
                      +|.||+++|+++ ++|||+|++|||++....              ..  .......++++++++||+|++|+|+|++|++
T Consensus       148 lG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~--------------~~--~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~  210 (324)
T 3hg7_A          148 TGSIGQHIAHTG-KHFGMKVLGVSRSGRERA--------------GF--DQVYQLPALNKMLAQADVIVSVLPATRETHH  210 (324)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCCCT--------------TC--SEEECGGGHHHHHHTCSEEEECCCCCSSSTT
T ss_pred             ECHHHHHHHHHH-HhCCCEEEEEcCChHHhh--------------hh--hcccccCCHHHHHhhCCEEEEeCCCCHHHHH
Confidence            999999999997 799999999999864210              00  0112346899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccCCCeEEcCCCCCCCc
Q 020301          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       253 li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~  326 (328)
                      +|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+||+|.
T Consensus       211 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~  285 (324)
T 3hg7_A          211 LFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSF  285 (324)
T ss_dssp             SBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCC
T ss_pred             HhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccH
Confidence            99999999999999999999999999999999999999999999999999975 579999999999999999985

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=4e-66  Score=492.16  Aligned_cols=286  Identities=28%  Similarity=0.428  Sum_probs=243.6

Q ss_pred             CeEEEEeCCCCc-hHHHHH-HHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHH-HHHHhhccCCceEE
Q 020301           15 KYRVVSTKPMPG-TRWINL-LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGET-LFAALSRAGGKAFS   91 (328)
Q Consensus        15 ~~~vlv~~~~~~-~~~~~~-l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~-~l~~~~~l~~k~i~   91 (328)
                      +|||++....+. ..+.+. +++.++++.....   ..+ +++.+.+. ++|+++++...+++++ +++++|+.++|+|+
T Consensus         1 Mmki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~-~~~~~~~~-~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~   75 (343)
T 2yq5_A            1 MTKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQ---ALT-SATVDLAE-GCSSVSLKPLGPVDEEVVYQKLSEYGVKCIG   75 (343)
T ss_dssp             -CEEEEESCCGGGHHHHHHHHHHHTCEEEEESS---CCS-TTGGGGGT-TCSEEEECCSSCBCCHHHHHHHHHTTCCEEE
T ss_pred             CceEEEEecCcccHHHHHHHHHhCCeEEEECCC---CCC-HHHHHHhc-CCcEEEEcCCCCcCHHHHHHhccccCceEEE
Confidence            378888764332 223333 4456777765432   223 45666676 7999999877899999 99999875669999


Q ss_pred             EccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHH-cCCCCCCCCCcccccccCCCEEEE
Q 020301           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR-AGLYDGWLPNLFVGNLLKGQTVGV  170 (328)
Q Consensus        92 ~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~-~g~w~~w~~~~~~~~~l~g~tvgI  170 (328)
                      +.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.++ +|.|. |.. ...+++|+|+|+||
T Consensus        76 ~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~-w~~-~~~~~~l~gktvgI  153 (343)
T 2yq5_A           76 LRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFT-WPS-NLISNEIYNLTVGL  153 (343)
T ss_dssp             ESSSCCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCC-CCG-GGCBCCGGGSEEEE
T ss_pred             ECceeecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcc-ccc-CCCccccCCCeEEE
Confidence            9999999999999999999999999999999999999999999999999999999 99885 753 24678999999999


Q ss_pred             EecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhh
Q 020301          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (328)
Q Consensus       171 iG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t  250 (328)
                      ||+|+||+++|+++ ++|||+|++|||+..+..+            .+      ....++++++++||+|++|+|+|++|
T Consensus       154 iGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~------------~~------~~~~~l~ell~~aDvV~l~~Plt~~t  214 (343)
T 2yq5_A          154 IGVGHIGSAVAEIF-SAMGAKVIAYDVAYNPEFE------------PF------LTYTDFDTVLKEADIVSLHTPLFPST  214 (343)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSSCCGGGT------------TT------CEECCHHHHHHHCSEEEECCCCCTTT
T ss_pred             EecCHHHHHHHHHH-hhCCCEEEEECCChhhhhh------------cc------ccccCHHHHHhcCCEEEEcCCCCHHH
Confidence            99999999999996 7999999999998754111            01      12359999999999999999999999


Q ss_pred             hccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCC--CCC------------CCcccCCCeE
Q 020301          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMK------------PGLSEMKNAI  316 (328)
Q Consensus       251 ~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP--~~~------------~~L~~~~nvi  316 (328)
                      +++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||  ++.            +|||++|||+
T Consensus       215 ~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvi  294 (343)
T 2yq5_A          215 ENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVV  294 (343)
T ss_dssp             TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEE
T ss_pred             HHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEE
Confidence            99999999999999999999999999999999999999999999999999999  333            2799999999


Q ss_pred             EcCCCCCCCc
Q 020301          317 VVPHIASASK  326 (328)
Q Consensus       317 lTPHia~~t~  326 (328)
                      +|||+||+|.
T Consensus       295 lTPHia~~t~  304 (343)
T 2yq5_A          295 ITPHSAFYTE  304 (343)
T ss_dssp             ECSSCTTCBH
T ss_pred             ECCccccchH
Confidence            9999999985

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=2.6e-65  Score=488.20  Aligned_cols=289  Identities=21%  Similarity=0.256  Sum_probs=246.4

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCC--CCccHHHHHHhhccCCceEEEc
Q 020301           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLT--EDWGETLFAALSRAGGKAFSNM   93 (328)
Q Consensus        16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~--~~~~~~~l~~~~~l~~k~i~~~   93 (328)
                      +++|-...... .+.+.|++.|+++.+.....  .+.+++.+.+. ++|+++++..  .++++++++++|+|  |+|++.
T Consensus        20 ~~~lg~~~~~l-~~~~~L~~~g~ev~~~~~~~--~~~~~~~~~~~-~ad~li~~~~~~~~~~~~~l~~~p~L--k~i~~~   93 (351)
T 3jtm_A           20 PNFLGCVENAL-GIRDWLESQGHQYIVTDDKE--GPDCELEKHIP-DLHVLISTPFHPAYVTAERIKKAKNL--KLLLTA   93 (351)
T ss_dssp             TTCCSSTTTGG-GCHHHHHHTTCEEEEESCCS--STTSHHHHHTT-TCSEEEECTTSCCCBCHHHHHHCSSC--CEEEES
T ss_pred             CCEEEeccchH-HHHHHHHHCCCEEEEeCCCC--CCHHHHHHHhC-CCEEEEEccCCCCCCCHHHHhhCCCC--eEEEEe
Confidence            34444443322 34678888899987654432  25568888887 7999998643  46899999999987  999999


Q ss_pred             cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEec
Q 020301           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (328)
Q Consensus        94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~  173 (328)
                      |+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|++..+++.+++|.|... .....+.+|+|+|+||||+
T Consensus        94 g~G~d~id~~~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~-~~~~~~~~l~gktvGIIG~  172 (351)
T 3jtm_A           94 GIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVA-GIAYRAYDLEGKTIGTVGA  172 (351)
T ss_dssp             SSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHH-HHHTTCCCSTTCEEEEECC
T ss_pred             CeeecccCHHHHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccc-cccCCcccccCCEEeEEEe
Confidence            999999999999999999999999999999999999999999999999999999988521 1112367899999999999


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhcc
Q 020301          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (328)
Q Consensus       174 G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~l  253 (328)
                      |+||+++|+++ ++|||+|++||+++.+...  ..       ..+     .....++++++++||+|++|+|+|++|+++
T Consensus       173 G~IG~~vA~~l-~~~G~~V~~~dr~~~~~~~--~~-------~~g-----~~~~~~l~ell~~aDvV~l~~Plt~~t~~l  237 (351)
T 3jtm_A          173 GRIGKLLLQRL-KPFGCNLLYHDRLQMAPEL--EK-------ETG-----AKFVEDLNEMLPKCDVIVINMPLTEKTRGM  237 (351)
T ss_dssp             SHHHHHHHHHH-GGGCCEEEEECSSCCCHHH--HH-------HHC-----CEECSCHHHHGGGCSEEEECSCCCTTTTTC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEeCCCccCHHH--HH-------hCC-----CeEcCCHHHHHhcCCEEEECCCCCHHHHHh
Confidence            99999999997 7999999999998632111  01       111     223468999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccCCCeEEcCCCCCCCc
Q 020301          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       254 i~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~  326 (328)
                      |+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+||+|.
T Consensus       238 i~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~  311 (351)
T 3jtm_A          238 FNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTI  311 (351)
T ss_dssp             BSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSH
T ss_pred             hcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCH
Confidence            9999999999999999999999999999999999999999999999999975 479999999999999999985

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=8.3e-65  Score=485.15  Aligned_cols=288  Identities=27%  Similarity=0.421  Sum_probs=248.5

Q ss_pred             CeEEEEeCCCCchH----HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEe-cCCCCccHHHHHHhhccCCce
Q 020301           15 KYRVVSTKPMPGTR----WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG-QLTEDWGETLFAALSRAGGKA   89 (328)
Q Consensus        15 ~~~vlv~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~-~~~~~~~~~~l~~~~~l~~k~   89 (328)
                      +|||++.+.+....    ..+.|+  +++++++..  ...+++++.+.+. ++|++++ +...++++++++++|+|  |+
T Consensus         2 smki~~~d~~~~~~~~~~~~~~l~--~~~v~~~~~--~~~~~~~l~~~~~-~ad~li~~~~~~~~~~~~l~~~~~L--k~   74 (352)
T 3gg9_A            2 SLKIAVLDDYQDAVRKLDCFSLLQ--DHEVKVFNN--TVKGVGQLAARVA-DVEALVLIRERTRVTRQLLDRLPKL--KI   74 (352)
T ss_dssp             CCEEEECCCTTCCGGGSGGGGGGT--TSEEEECCS--CCCSHHHHHHHTT-TCSEEEECTTSSCBCHHHHTTCTTC--CE
T ss_pred             ceEEEEEcCccccchhhhhhhhhc--CceEEEecC--CCCCHHHHHHHhc-CCeEEEEeCCCCCCCHHHHhhCCCC--eE
Confidence            48999988765421    113343  467776432  2346788988887 7999998 56678999999999987  99


Q ss_pred             EEEccccC----CccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCC-------CCCCcc
Q 020301           90 FSNMAVGY----NNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG-------WLPNLF  158 (328)
Q Consensus        90 i~~~g~G~----d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~-------w~~~~~  158 (328)
                      |++.|+|+    |+||+++|+++||.|+|+||+ +.+||||++++||++.|++..+++.+++|.|..       |.+...
T Consensus        75 I~~~g~G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~  153 (352)
T 3gg9_A           75 ISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFG  153 (352)
T ss_dssp             EEESSCCCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTT
T ss_pred             EEEeCcccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccc
Confidence            99999999    999999999999999999999 999999999999999999999999999999964       433334


Q ss_pred             cccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       159 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      .+++|.|+|+||||+|.||+++|+++ ++|||+|++|||+......          ...|     .....++++++++||
T Consensus       154 ~~~~l~g~tvGIIGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~----------~~~g-----~~~~~~l~ell~~aD  217 (352)
T 3gg9_A          154 IGRVLKGQTLGIFGYGKIGQLVAGYG-RAFGMNVLVWGRENSKERA----------RADG-----FAVAESKDALFEQSD  217 (352)
T ss_dssp             SBCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSHHHHHHH----------HHTT-----CEECSSHHHHHHHCS
T ss_pred             cCccCCCCEEEEEeECHHHHHHHHHH-HhCCCEEEEECCCCCHHHH----------HhcC-----ceEeCCHHHHHhhCC
Confidence            57899999999999999999999996 7999999999998633111          1112     223359999999999


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccCCCeEE
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIV  317 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvil  317 (328)
                      +|++|+|+|++|+++|+++.|++||+|++|||+|||+++|++||++||++|+|+||+||||++||++ ++|||++|||++
T Consensus       218 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvil  297 (352)
T 3gg9_A          218 VLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCIC  297 (352)
T ss_dssp             EEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEE
T ss_pred             EEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999985 579999999999


Q ss_pred             cCCCCCCCc
Q 020301          318 VPHIASASK  326 (328)
Q Consensus       318 TPHia~~t~  326 (328)
                      |||+||+|.
T Consensus       298 TPHia~~t~  306 (352)
T 3gg9_A          298 TPHIGYVER  306 (352)
T ss_dssp             CCSCTTCBH
T ss_pred             CCCCCCCCH
Confidence            999999985

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=1.4e-65  Score=485.45  Aligned_cols=279  Identities=20%  Similarity=0.246  Sum_probs=240.2

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHH-HHhhccCCceEEEc
Q 020301           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLF-AALSRAGGKAFSNM   93 (328)
Q Consensus        15 ~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l-~~~~~l~~k~i~~~   93 (328)
                      +||||++.++++. +.+.|++.++++++....+  .+.++    +. ++|+++++.. ++ ++++ +++|+|  |+|++.
T Consensus         1 m~kil~~~~~~~~-~~~~L~~~~~~~~~~~~~~--~~~~~----~~-~ad~l~~~~~-~~-~~~l~~~~~~L--k~I~~~   68 (324)
T 3evt_A            1 MSLVLMAQATKPE-QLQQLQTTYPDWTFKDAAA--VTAAD----YD-QIEVMYGNHP-LL-KTILARPTNQL--KFVQVI   68 (324)
T ss_dssp             -CEEEECSCCCHH-HHHHHHHHCTTCEEEETTS--CCTTT----GG-GEEEEESCCT-HH-HHHHHSTTCCC--CEEECS
T ss_pred             CcEEEEecCCCHH-HHHHHHhhCCCeEEecCCc--cChHH----hC-CcEEEEECCc-Ch-HHHHHhhCCCc--eEEEEC
Confidence            3799999999874 6788888776555443221  23333    33 6898887643 46 8888 678987  999999


Q ss_pred             cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHH-HHHHHcCCCCCCCCCcccccccCCCEEEEEe
Q 020301           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA-DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (328)
Q Consensus        94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~-~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG  172 (328)
                      |+|+|+||+++++++||.|+|+||+++.+||||++++||+++|++..+ ++.+++|.|....    .+++++|+|+||||
T Consensus        69 ~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~----~~~~l~gktvGIiG  144 (324)
T 3evt_A           69 SAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPM----TTSTLTGQQLLIYG  144 (324)
T ss_dssp             SSCCTTSCHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS----CCCCSTTCEEEEEC
T ss_pred             CccccccCHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCC----CCccccCCeEEEEC
Confidence            999999999999999999999999999999999999999999999999 9999999876421    46899999999999


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhc
Q 020301          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (328)
Q Consensus       173 ~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~  252 (328)
                      +|.||+++|+++ ++|||+|++|||+.....              ...  ......++++++++||+|++|+|+|++|++
T Consensus       145 lG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~--------------~~~--~~~~~~~l~ell~~aDvV~l~lPlt~~t~~  207 (324)
T 3evt_A          145 TGQIGQSLAAKA-SALGMHVIGVNTTGHPAD--------------HFH--ETVAFTATADALATANFIVNALPLTPTTHH  207 (324)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEEESSCCCCT--------------TCS--EEEEGGGCHHHHHHCSEEEECCCCCGGGTT
T ss_pred             cCHHHHHHHHHH-HhCCCEEEEECCCcchhH--------------hHh--hccccCCHHHHHhhCCEEEEcCCCchHHHH
Confidence            999999999997 799999999999864310              000  012346899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccCCCeEEcCCCCCCCc
Q 020301          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       253 li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~  326 (328)
                      +|+++.|+.||+|++|||+|||+++|++||++||++|+|+||+||||++||++ ++|||++|||++|||+||+|.
T Consensus       208 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~  282 (324)
T 3evt_A          208 LFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIA  282 (324)
T ss_dssp             CBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCC
T ss_pred             hcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChH
Confidence            99999999999999999999999999999999999999999999999999976 579999999999999999985

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.4e-63  Score=470.52  Aligned_cols=286  Identities=30%  Similarity=0.464  Sum_probs=250.8

Q ss_pred             CCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEE
Q 020301           13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (328)
Q Consensus        13 ~~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~   92 (328)
                      .+++||+++.++++. ..+.|++.++++....    ..+++++.+.+. ++|+++++...++++++++++|+|  |+|++
T Consensus        24 ~~~~~vli~~~~~~~-~~~~l~~~~~~v~~~~----~~~~~~~~~~~~-~~d~li~~~~~~~~~~~l~~~~~L--k~I~~   95 (335)
T 2g76_A           24 ANLRKVLISDSLDPC-CRKILQDGGLQVVEKQ----NLSKEELIAELQ-DCEGLIVRSATKVTADVINAAEKL--QVVGR   95 (335)
T ss_dssp             --CCEEEECSCCCHH-HHHHHHHHTCEEEECC----SCCHHHHHHHGG-GCSEEEECSSSCBCHHHHHHCSSC--CEEEE
T ss_pred             ccceEEEEcCCCCHH-HHHHHHhCCCEEEECC----CCCHHHHHHHhc-CceEEEEcCCCCCCHHHHhhCCCC--cEEEE
Confidence            345689998887653 4677777677765422    246788888887 799999887778999999999987  99999


Q ss_pred             ccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEe
Q 020301           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (328)
Q Consensus        93 ~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG  172 (328)
                      .|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..   ....+.++.|+|+||||
T Consensus        96 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~---~~~~~~~l~g~tvgIIG  172 (335)
T 2g76_A           96 AGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWER---KKFMGTELNGKTLGILG  172 (335)
T ss_dssp             SSSSCTTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCT---GGGCBCCCTTCEEEEEC
T ss_pred             CCCCcchhChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCc---cCCCCcCCCcCEEEEEe
Confidence            999999999999999999999999999999999999999999999999999999998752   22356899999999999


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhc
Q 020301          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (328)
Q Consensus       173 ~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~  252 (328)
                      +|.||+.+|+++ ++|||+|++|||+..+...   .       ..|.      ...++++++++||+|++|+|++++|++
T Consensus       173 lG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~---~-------~~g~------~~~~l~ell~~aDvV~l~~P~t~~t~~  235 (335)
T 2g76_A          173 LGRIGREVATRM-QSFGMKTIGYDPIISPEVS---A-------SFGV------QQLPLEEIWPLCDFITVHTPLLPSTTG  235 (335)
T ss_dssp             CSHHHHHHHHHH-HTTTCEEEEECSSSCHHHH---H-------HTTC------EECCHHHHGGGCSEEEECCCCCTTTTT
T ss_pred             ECHHHHHHHHHH-HHCCCEEEEECCCcchhhh---h-------hcCc------eeCCHHHHHhcCCEEEEecCCCHHHHH
Confidence            999999999996 7999999999998754211   1       1121      125899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCCCc
Q 020301          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       253 li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~  326 (328)
                      +|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||.+++|||++|||++|||+|++|.
T Consensus       236 li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~  309 (335)
T 2g76_A          236 LLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTK  309 (335)
T ss_dssp             SBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBH
T ss_pred             hhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCH
Confidence            99999999999999999999999999999999999999999999999999977789999999999999999985

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=8.5e-64  Score=479.25  Aligned_cols=285  Identities=23%  Similarity=0.337  Sum_probs=233.9

Q ss_pred             CCeEEEEeCCCCc-------hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccC
Q 020301           14 GKYRVVSTKPMPG-------TRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAG   86 (328)
Q Consensus        14 ~~~~vlv~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~   86 (328)
                      +.+++++..+.+.       +...+.|++. +++....    ..+++++.+.+..++++++..  .++++++++++|+| 
T Consensus        26 ~~r~ivll~~~~~~~~~~~~~~~~~~L~~~-~~v~~~~----~~~~~e~~~~~~~~~~~i~~~--~~i~~~~l~~~p~L-   97 (365)
T 4hy3_A           26 TERPLAISAPEPRSLDLIFSDEARAALHSK-YEIVEAD----PENIAGLGDDILGRARYIIGQ--PPLSAETLARMPAL-   97 (365)
T ss_dssp             --CCEEEEECTTSCHHHHCCHHHHHHHHHH-SEEEECC----GGGGGGSCTTHHHHEEEEEEC--CCCCHHHHTTCTTC-
T ss_pred             CCCCEEEEcCCcccccccCCHHHHHHHhCC-cEEEECC----CCChHHHHHHhhCCeEEEEeC--CCCCHHHHhhCCCC-
Confidence            4456666665533       2235667765 5665321    223445443322257777743  58999999999988 


Q ss_pred             CceEEEc-cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCC-cccccccC
Q 020301           87 GKAFSNM-AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN-LFVGNLLK  164 (328)
Q Consensus        87 ~k~i~~~-g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~-~~~~~~l~  164 (328)
                       |+|++. |+|||+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|. |... ...+.+++
T Consensus        98 -k~I~~~~~~G~d~iD~~~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~-w~~~~~~~~~~l~  175 (365)
T 4hy3_A           98 -RSILNVESNLLNNMPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTEL-WGGEGNASARLIA  175 (365)
T ss_dssp             -CEEECCSSSCCSCSCTTHHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCC-CSSSSTTSCCCSS
T ss_pred             -eEEEEecccccCcccHHHHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCcc-ccccccccccccC
Confidence             999975 8999999999999999999999999999999999999999999999999999999974 6532 23578999


Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      |+|+||||+|+||+.+|+++ ++|||+|++|||+......          ...|.      ...++++++++||+|++|+
T Consensus       176 gktvGIIGlG~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~----------~~~g~------~~~~l~ell~~aDvV~l~~  238 (365)
T 4hy3_A          176 GSEIGIVGFGDLGKALRRVL-SGFRARIRVFDPWLPRSML----------EENGV------EPASLEDVLTKSDFIFVVA  238 (365)
T ss_dssp             SSEEEEECCSHHHHHHHHHH-TTSCCEEEEECSSSCHHHH----------HHTTC------EECCHHHHHHSCSEEEECS
T ss_pred             CCEEEEecCCcccHHHHHhh-hhCCCEEEEECCCCCHHHH----------hhcCe------eeCCHHHHHhcCCEEEEcC
Confidence            99999999999999999996 8999999999998643211          11121      2368999999999999999


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccCCCeEEcCCCCC
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIAS  323 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~  323 (328)
                      |+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+ ||||||++||++ ++|||++|||++|||+||
T Consensus       239 Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia~  317 (365)
T 4hy3_A          239 AVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRAG  317 (365)
T ss_dssp             CSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSCSS
T ss_pred             cCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCcccc
Confidence            999999999999999999999999999999999999999999999998 999999999975 579999999999999999


Q ss_pred             CCc
Q 020301          324 ASK  326 (328)
Q Consensus       324 ~t~  326 (328)
                      +|.
T Consensus       318 ~t~  320 (365)
T 4hy3_A          318 ALD  320 (365)
T ss_dssp             CCH
T ss_pred             CHH
Confidence            985

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=5.5e-63  Score=469.82  Aligned_cols=285  Identities=21%  Similarity=0.325  Sum_probs=242.8

Q ss_pred             eEEEEeC--CCCchHHHHHHHh-CCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEE
Q 020301           16 YRVVSTK--PMPGTRWINLLIE-QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (328)
Q Consensus        16 ~~vlv~~--~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~   92 (328)
                      |||++..  +.. ..+.+.|.+ .++++.....   ..+++++.+.+. ++|+++++...++++++++++|+.++|+|++
T Consensus         1 mki~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~   75 (331)
T 1xdw_A            1 MKVLCYGVRDVE-LPIFEACNKEFGYDIKCVPD---YLNTKETAEMAA-GFDAVILRGNCFANKQNLDIYKKLGVKYILT   75 (331)
T ss_dssp             CEEEECSCCTTT-HHHHHHHGGGTCCEEEECSC---CSCSHHHHHTTT-TCSEEEECTTCCBCHHHHHHHHHHTCCEEEE
T ss_pred             CEEEEEecCccC-HHHHHHHHHhcCeEEEECCC---CCCHHHHHHHhc-CCeEEEEeCCCCCCHHHHhhCcccCceEEEE
Confidence            5788754  333 335566654 4555554221   234477777776 7999999877789999999999844599999


Q ss_pred             ccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEe
Q 020301           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (328)
Q Consensus        93 ~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG  172 (328)
                      .|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|. |.. ...+.++.|+|+||||
T Consensus        76 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~-~~~~~~l~g~~vgIiG  153 (331)
T 1xdw_A           76 RTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK-VDA-FMFSKEVRNCTVGVVG  153 (331)
T ss_dssp             SSSCCTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCC-CCS-TTCCCCGGGSEEEEEC
T ss_pred             ccccccccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCc-ccc-CcCccCCCCCEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999985 622 2356899999999999


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhc
Q 020301          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (328)
Q Consensus       173 ~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~  252 (328)
                      +|.||+.+|+++ ++|||+|++||++.....                .. . ....++++++++||+|++|+|+|++|++
T Consensus       154 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~----------------~~-~-~~~~~l~ell~~aDvV~~~~p~t~~t~~  214 (331)
T 1xdw_A          154 LGRIGRVAAQIF-HGMGATVIGEDVFEIKGI----------------ED-Y-CTQVSLDEVLEKSDIITIHAPYIKENGA  214 (331)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCCSC----------------TT-T-CEECCHHHHHHHCSEEEECCCCCTTTCC
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCccHHH----------------Hh-c-cccCCHHHHHhhCCEEEEecCCchHHHH
Confidence            999999999996 799999999999865310                00 0 1235899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCC--C--------CC----CcccC-CCeEE
Q 020301          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--M--------KP----GLSEM-KNAIV  317 (328)
Q Consensus       253 li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~--~--------~~----~L~~~-~nvil  317 (328)
                      +|+++.|+.||+|++|||+|||+++|++||++||++|+|+||+||||++||+  +        ++    |||++ |||++
T Consensus       215 li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvil  294 (331)
T 1xdw_A          215 VVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLI  294 (331)
T ss_dssp             SBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEE
T ss_pred             HhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEE
Confidence            9999999999999999999999999999999999999999999999999994  1        12    79999 99999


Q ss_pred             cCCCCCCCc
Q 020301          318 VPHIASASK  326 (328)
Q Consensus       318 TPHia~~t~  326 (328)
                      |||+||+|.
T Consensus       295 TPHia~~t~  303 (331)
T 1xdw_A          295 TPHLGSYTD  303 (331)
T ss_dssp             CCSCTTCSH
T ss_pred             cCccccChH
Confidence            999999985

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=4.9e-62  Score=461.32  Aligned_cols=289  Identities=29%  Similarity=0.502  Sum_probs=252.0

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhc-cCCceEEEcc
Q 020301           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSR-AGGKAFSNMA   94 (328)
Q Consensus        16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~-l~~k~i~~~g   94 (328)
                      +||+++.++++. ..+.|++ .+++++... +...+++++.+.+. ++|+++++..+++++++++++|+ |  |+|++.|
T Consensus         2 ~~vl~~~~~~~~-~~~~l~~-~~~~~~~~~-~~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~L--k~I~~~~   75 (320)
T 1gdh_A            2 KKILITWPLPEA-AMARARE-SYDVIAHGD-DPKITIDEMIETAK-SVDALLITLNEKCRKEVIDRIPENI--KCISTYS   75 (320)
T ss_dssp             CEEEESSCCCHH-HHHHHHT-TSEEEECCS-TTCCCHHHHHHHHT-TCSEEEEETTSCBCHHHHHHSCTTC--CEEEEES
T ss_pred             cEEEEcCCCCHH-HHHHHHh-cCCEEEecC-CCCCCHHHHHHHhc-CCEEEEECCCCCCCHHHHHhCCccc--eEEEECC
Confidence            578888887654 4567765 356665332 22357888888887 79999988767899999999998 6  9999999


Q ss_pred             ccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecC
Q 020301           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (328)
Q Consensus        95 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G  174 (328)
                      +|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..|.+....+.++.|+|+||||+|
T Consensus        76 ~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G  155 (320)
T 1gdh_A           76 IGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFG  155 (320)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCS
T ss_pred             cccccccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcC
Confidence            99999999999999999999999999999999999999999999999999999999766543345789999999999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEcC-CchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhcc
Q 020301          175 RIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (328)
Q Consensus       175 ~IG~~vA~~l~~~fg~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~l  253 (328)
                      +||+++|+++ ++|||+|++||+ +......   ..+       +.     ....++++++++||+|++|+|++++|+++
T Consensus       156 ~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~~---~~~-------g~-----~~~~~l~ell~~aDvVil~~p~~~~t~~~  219 (320)
T 1gdh_A          156 SIGQALAKRA-QGFDMDIDYFDTHRASSSDE---ASY-------QA-----TFHDSLDSLLSVSQFFSLNAPSTPETRYF  219 (320)
T ss_dssp             HHHHHHHHHH-HTTTCEEEEECSSCCCHHHH---HHH-------TC-----EECSSHHHHHHHCSEEEECCCCCTTTTTC
T ss_pred             HHHHHHHHHH-HHCCCEEEEECCCCcChhhh---hhc-------Cc-----EEcCCHHHHHhhCCEEEEeccCchHHHhh
Confidence            9999999997 799999999999 7654211   111       11     12248999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCCCc
Q 020301          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       254 i~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~  326 (328)
                      ++++.|+.||+|++|||+|||+++|+++|.++|++|+|+||+||||++||..++|||++|||++|||++++|.
T Consensus       220 i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nviltPH~~~~t~  292 (320)
T 1gdh_A          220 FNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAAT  292 (320)
T ss_dssp             BSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTCBH
T ss_pred             cCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCEEECCcCCcCcH
Confidence            9999999999999999999999999999999999999999999999999966789999999999999999985

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=2.7e-62  Score=461.25  Aligned_cols=282  Identities=38%  Similarity=0.604  Sum_probs=250.9

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 020301           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (328)
Q Consensus        16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~   95 (328)
                      +||+++.++++. ..+.|++.++++++....  ..+.+++.+.+. ++|+++++...++++++++++|+|  |+|++.|+
T Consensus         1 ~~vl~~~~~~~~-~~~~l~~~g~~v~~~~~~--~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~i~~~~~   74 (311)
T 2cuk_A            1 MRVLVTRTLPGK-ALDRLRERGLEVEVHRGL--FLPKAELLKRVE-GAVGLIPTVEDRIDAEVMDRAKGL--KVIACYSV   74 (311)
T ss_dssp             CEEEESSCCSSS-TTHHHHHTTCEEEECCSS--CCCHHHHHHHHT-TCSEEECCTTSCBCHHHHHHSTTC--CEEECSSS
T ss_pred             CEEEEeCCCCHH-HHHHHHhcCCeEEEecCC--CCCHHHHHHHhc-CCeEEEEcCCCCCCHHHHhhCCCC--eEEEECCc
Confidence            578888877654 357788776787654322  357788888887 799999887678999999999987  99999999


Q ss_pred             cCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH
Q 020301           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (328)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~  175 (328)
                      |+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..|.+....+.++.|+|+||||+|.
T Consensus        75 G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~  154 (311)
T 2cuk_A           75 GVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGR  154 (311)
T ss_dssp             CCTTBCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSH
T ss_pred             CccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECH
Confidence            99999999999999999999999999999999999999999999999999999997665433457899999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhcccc
Q 020301          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN  255 (328)
Q Consensus       176 IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~  255 (328)
                      ||+.+|+++ ++|||+|++|||+....                 .    ....++++++++||+|++|+|++++|+++++
T Consensus       155 IG~~~A~~l-~~~G~~V~~~d~~~~~~-----------------~----~~~~~l~ell~~aDvV~l~~p~~~~t~~li~  212 (311)
T 2cuk_A          155 IGQAVAKRA-LAFGMRVVYHARTPKPL-----------------P----YPFLSLEELLKEADVVSLHTPLTPETHRLLN  212 (311)
T ss_dssp             HHHHHHHHH-HHTTCEEEEECSSCCSS-----------------S----SCBCCHHHHHHHCSEEEECCCCCTTTTTCBC
T ss_pred             HHHHHHHHH-HHCCCEEEEECCCCccc-----------------c----cccCCHHHHHhhCCEEEEeCCCChHHHhhcC
Confidence            999999997 79999999999986431                 0    1246899999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccCCCeEEcCCCCCCCc
Q 020301          256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       256 ~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~  326 (328)
                      ++.|+.||+|+++||+|||+++|+++|+++|+ |+|+||+||||++||++ ++|||++|||++|||+|++|.
T Consensus       213 ~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~  283 (311)
T 2cuk_A          213 RERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGR  283 (311)
T ss_dssp             HHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBH
T ss_pred             HHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCH
Confidence            99999999999999999999999999999999 99999999999999964 689999999999999999985

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=3.6e-63  Score=471.34  Aligned_cols=284  Identities=27%  Similarity=0.420  Sum_probs=240.3

Q ss_pred             eEEEEeC--CCCchHHHHHHHh-CCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEE
Q 020301           16 YRVVSTK--PMPGTRWINLLIE-QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (328)
Q Consensus        16 ~~vlv~~--~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~   92 (328)
                      |||++..  +.. ..+.+.|.+ .++++......    ..+++.+.+. ++|+++++...++++++++++|+.++|+|++
T Consensus         1 Mkil~~~~~~~~-~~~~~~l~~~~~~~v~~~~~~----~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~   74 (333)
T 1dxy_A            1 MKIIAYGARVDE-IQYFKQWAKDTGNTLEYHTEF----LDENTVEWAK-GFDGINSLQTTPYAAGVFEKMHAYGIKFLTI   74 (333)
T ss_dssp             CEEEECSCCTTT-HHHHHHHHHHHCCEEEECSSC----CCTTGGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEeccccC-HHHHHHHHHhCCeEEEEcCCC----ChHHHHHHhc-CCeEEEEcCCCCCCHHHHHhCcccCceEEEE
Confidence            4777753  333 345566643 46666543321    2245555565 7999998877789999999999834499999


Q ss_pred             ccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEe
Q 020301           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (328)
Q Consensus        93 ~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG  172 (328)
                      .|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|. |.. ...+.++.|+|+||||
T Consensus        75 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~-~~~~~~l~g~~vgIiG  152 (333)
T 1dxy_A           75 RNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE-KAG-TFIGKELGQQTVGVMG  152 (333)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHH-HHT-CCCCCCGGGSEEEEEC
T ss_pred             cCcccCccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcc-ccc-CCCccCCCCCEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999984 511 1356899999999999


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhc
Q 020301          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (328)
Q Consensus       173 ~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~  252 (328)
                      +|+||+.+|+++ ++|||+|++||++.....                ...  ....++++++++||+|++|+|+|++|++
T Consensus       153 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~----------------~~~--~~~~~l~ell~~aDvV~~~~P~~~~t~~  213 (333)
T 1dxy_A          153 TGHIGQVAIKLF-KGFGAKVIAYDPYPMKGD----------------HPD--FDYVSLEDLFKQSDVIDLHVPGIEQNTH  213 (333)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCSSC----------------CTT--CEECCHHHHHHHCSEEEECCCCCGGGTT
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCcchhh----------------Hhc--cccCCHHHHHhcCCEEEEcCCCchhHHH
Confidence            999999999996 799999999999865310                000  1235899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCC-----------CC---CCcccCCCeEEc
Q 020301          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-----------MK---PGLSEMKNAIVV  318 (328)
Q Consensus       253 li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~-----------~~---~~L~~~~nvilT  318 (328)
                      +|+++.|+.||+|++|||+|||+++|+++|++||++|+|+||+||||++||+           ++   +|||++|||++|
T Consensus       214 li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~T  293 (333)
T 1dxy_A          214 IINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLS  293 (333)
T ss_dssp             SBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEEC
T ss_pred             HhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEEC
Confidence            9999999999999999999999999999999999999999999999999993           22   379999999999


Q ss_pred             CCCCCCCc
Q 020301          319 PHIASASK  326 (328)
Q Consensus       319 PHia~~t~  326 (328)
                      ||+||+|.
T Consensus       294 PHia~~t~  301 (333)
T 1dxy_A          294 PHIAYYTE  301 (333)
T ss_dssp             SSCTTCSH
T ss_pred             CccccChH
Confidence            99999985

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=3.5e-62  Score=459.86  Aligned_cols=285  Identities=34%  Similarity=0.557  Sum_probs=248.9

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEc
Q 020301           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (328)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (328)
                      ++|||+++.++++. ..+.|++.++++.. .   ...+.+++.+.+. ++|+++++...++++++++++|+|  |+|++.
T Consensus         2 ~~~~il~~~~~~~~-~~~~l~~~~~~~~~-~---~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~   73 (307)
T 1wwk_A            2 KRMKVLVAAPLHEK-AIQVLKDAGLEVIY-E---EYPDEDRLVELVK-DVEAIIVRSKPKVTRRVIESAPKL--KVIARA   73 (307)
T ss_dssp             --CEEEECSCCCHH-HHHHHHHTTCEEEE-C---SSCCHHHHHHHST-TCSEEEESSCSCBCHHHHTTCTTC--CEEEES
T ss_pred             CceEEEEeCCCCHH-HHHHHHhCCeEEEe-C---CCCCHHHHHHHhc-CCEEEEEcCCCCCCHHHHhhCCCC--eEEEEC
Confidence            35789998887653 46778776666642 1   1246788888886 799999887667999999999987  999999


Q ss_pred             cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEec
Q 020301           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (328)
Q Consensus        94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~  173 (328)
                      |+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..   ....+.++.|+|+||||+
T Consensus        74 ~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~---~~~~~~~l~g~~vgIiG~  150 (307)
T 1wwk_A           74 GVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAK---KEAMGIELEGKTIGIIGF  150 (307)
T ss_dssp             SSCCTTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCT---TTCCBCCCTTCEEEEECC
T ss_pred             CccccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCc---cCcCCcccCCceEEEEcc
Confidence            99999999999999999999999999999999999999999999999999999998753   123468999999999999


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhcc
Q 020301          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (328)
Q Consensus       174 G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~l  253 (328)
                      |.||+++|+++ ++|||+|++||++..+...   .       ..|.      ...++++++++||+|++|+|++++|+++
T Consensus       151 G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~---~-------~~g~------~~~~l~ell~~aDvV~l~~p~~~~t~~l  213 (307)
T 1wwk_A          151 GRIGYQVAKIA-NALGMNILLYDPYPNEERA---K-------EVNG------KFVDLETLLKESDVVTIHVPLVESTYHL  213 (307)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECSSCCHHHH---H-------HTTC------EECCHHHHHHHCSEEEECCCCSTTTTTC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCCCChhhH---h-------hcCc------cccCHHHHHhhCCEEEEecCCChHHhhh
Confidence            99999999997 7999999999998754211   1       1121      2248999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCC-CCCCcccCCCeEEcCCCCCCCc
Q 020301          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       254 i~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~-~~~~L~~~~nvilTPHia~~t~  326 (328)
                      |+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+ .++|||++|||++|||+|++|.
T Consensus       214 i~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~  287 (307)
T 1wwk_A          214 INEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTV  287 (307)
T ss_dssp             BCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBH
T ss_pred             cCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcH
Confidence            999999999999999999999999999999999999999999999999998 4689999999999999999985

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=1.5e-62  Score=467.28  Aligned_cols=285  Identities=29%  Similarity=0.445  Sum_probs=241.5

Q ss_pred             eEEEEeCCCCc-hHHHHHHHhC--CCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEE
Q 020301           16 YRVVSTKPMPG-TRWINLLIEQ--DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (328)
Q Consensus        16 ~~vlv~~~~~~-~~~~~~l~~~--~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~   92 (328)
                      |||++....+. ..+.+.|++.  ++++......    ..+++.+.+. ++|+++++...++++++++++|+.++|+|++
T Consensus         2 mkil~~~~~~~~~~~~~~l~~~~p~~~v~~~~~~----~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~   76 (333)
T 1j4a_A            2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKL----LTPETVALAK-GADGVVVYQQLDYIAETLQALADNGITKMSL   76 (333)
T ss_dssp             CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSSC----CCTTTGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEE
T ss_pred             cEEEEEecCccCHHHHHHHHhhCCCcEEEECCCC----CcHHHHHHhc-CCcEEEEcCCCCCCHHHHHhccccCCeEEEE
Confidence            67877643322 3356666653  4566543221    1245555665 7999998766789999999999834499999


Q ss_pred             ccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEe
Q 020301           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (328)
Q Consensus        93 ~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG  172 (328)
                      .|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|. |..  ..+.++.|+|+||||
T Consensus        77 ~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~--~~~~~l~g~~vgIiG  153 (333)
T 1j4a_A           77 RNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLR-WAP--TIGREVRDQVVGVVG  153 (333)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCC-CTT--CCBCCGGGSEEEEEC
T ss_pred             CCcccccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCc-cCC--cccccCCCCEEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999995 643  357899999999999


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhc
Q 020301          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (328)
Q Consensus       173 ~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~  252 (328)
                      +|+||+.+|+++ ++|||+|++||++..+..++            .     .....++++++++||+|++|+|+|++|++
T Consensus       154 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~~------------~-----~~~~~~l~ell~~aDvV~l~~p~~~~t~~  215 (333)
T 1j4a_A          154 TGHIGQVFMQIM-EGFGAKVITYDIFRNPELEK------------K-----GYYVDSLDDLYKQADVISLHVPDVPANVH  215 (333)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCHHHHH------------T-----TCBCSCHHHHHHHCSEEEECSCCCGGGTT
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCcchhHHh------------h-----CeecCCHHHHHhhCCEEEEcCCCcHHHHH
Confidence            999999999997 79999999999987543110            0     11123899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCC--CC--------C----CcccCCCeEEc
Q 020301          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MK--------P----GLSEMKNAIVV  318 (328)
Q Consensus       253 li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~--~~--------~----~L~~~~nvilT  318 (328)
                      +|+++.|+.||+|++|||+|||+++|+++|++||++|+|+||+||||++||+  +.        +    |||++|||++|
T Consensus       216 li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilT  295 (333)
T 1j4a_A          216 MINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVT  295 (333)
T ss_dssp             CBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEEC
T ss_pred             HHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEEC
Confidence            9999999999999999999999999999999999999999999999999993  21        2    59999999999


Q ss_pred             CCCCCCCc
Q 020301          319 PHIASASK  326 (328)
Q Consensus       319 PHia~~t~  326 (328)
                      ||+||+|.
T Consensus       296 PHia~~t~  303 (333)
T 1j4a_A          296 PKTAFYTT  303 (333)
T ss_dssp             SSCTTCBH
T ss_pred             CccccCHH
Confidence            99999985

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=5.8e-62  Score=459.49  Aligned_cols=283  Identities=27%  Similarity=0.454  Sum_probs=250.5

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEc
Q 020301           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (328)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (328)
                      .+|||+++.++++ .+.+.|++.++++.. .   ...+++++.+.+. ++|+++++...++++++++++|+|  |+|++.
T Consensus         4 ~~mkil~~~~~~~-~~~~~l~~~~~~v~~-~---~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~   75 (313)
T 2ekl_A            4 YTVKALITDPIDE-ILIKTLREKGIQVDY-M---PEISKEELLNIIG-NYDIIVVRSRTKVTKDVIEKGKKL--KIIARA   75 (313)
T ss_dssp             CCCEEEECSCCCH-HHHHHHHHTTCEEEE-C---TTCCHHHHHHHGG-GCSEEEECSSSCBCHHHHHHCTTC--CEEEEC
T ss_pred             cceEEEEECCCCH-HHHHHHHhCCcEEEe-C---CCCCHHHHHHHhc-CCeEEEEcCCCCCCHHHHhhCCCC--eEEEEc
Confidence            4578999888765 346788877776642 1   2346788888887 799999876678999999999987  999999


Q ss_pred             cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEec
Q 020301           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (328)
Q Consensus        94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~  173 (328)
                      |+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..     ..+.++.|+|+||||+
T Consensus        76 ~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~-----~~~~~l~g~~vgIIG~  150 (313)
T 2ekl_A           76 GIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKK-----IEGLELAGKTIGIVGF  150 (313)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCC-----CCCCCCTTCEEEEESC
T ss_pred             CCCCCccCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCC-----CCCCCCCCCEEEEEee
Confidence            99999999999999999999999999999999999999999999999999999998752     3467999999999999


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhcc
Q 020301          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (328)
Q Consensus       174 G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~l  253 (328)
                      |+||+.+|+++ ++|||+|++||++......   .       ..|.     . ..++++++++||+|++|+|++++|+++
T Consensus       151 G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~---~-------~~g~-----~-~~~l~ell~~aDvVvl~~P~~~~t~~l  213 (313)
T 2ekl_A          151 GRIGTKVGIIA-NAMGMKVLAYDILDIREKA---E-------KINA-----K-AVSLEELLKNSDVISLHVTVSKDAKPI  213 (313)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECSSCCHHHH---H-------HTTC-----E-ECCHHHHHHHCSEEEECCCCCTTSCCS
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCCcchhHH---H-------hcCc-----e-ecCHHHHHhhCCEEEEeccCChHHHHh
Confidence            99999999997 7999999999998764211   1       1121     1 248999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCC---CcccCCCeEEcCCCCCCCc
Q 020301          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP---GLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       254 i~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~---~L~~~~nvilTPHia~~t~  326 (328)
                      ++++.|+.||+|++|||+|||+++|+++|.++|++|+|+||+||||++||++++   |||++|||++|||+|++|.
T Consensus       214 i~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L~~~~nviltPH~~~~t~  289 (313)
T 2ekl_A          214 IDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTK  289 (313)
T ss_dssp             BCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHHHHSTTEEECCSCTTCSH
T ss_pred             hCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCCCcccchHhhCCCEEECCccCcCcH
Confidence            999999999999999999999999999999999999999999999999998887   9999999999999999985

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=1.5e-62  Score=463.30  Aligned_cols=275  Identities=20%  Similarity=0.245  Sum_probs=233.6

Q ss_pred             CCeEEEEeCCCC-chHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEE
Q 020301           14 GKYRVVSTKPMP-GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (328)
Q Consensus        14 ~~~~vlv~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~   92 (328)
                      +.|||++..+.+ ...|.+.|++..+++++....+     ++    .. ++|+++++.   .+++++++ |+|  |+|++
T Consensus         2 ~~mkil~~~~~~~~~~~~~~l~~~~p~~~~~~~~~-----~~----~~-~ad~~i~~~---~~~~~l~~-~~L--k~I~~   65 (315)
T 3pp8_A            2 NAMEIIFYHPTFNAAWWVNALEKALPHARVREWKV-----GD----NN-PADYALVWQ---PPVEMLAG-RRL--KAVFV   65 (315)
T ss_dssp             CCEEEEEECSSSCHHHHHHHHHHHSTTEEEEECCT-----TC----CS-CCSEEEESS---CCHHHHTT-CCC--SEEEE
T ss_pred             CceEEEEEcCCCchHHHHHHHHHHCCCCEEEecCC-----CC----cc-CcEEEEECC---CCHHHhCC-CCc--eEEEE
Confidence            568999987754 3467888887666666543322     11    22 699999874   46899998 887  99999


Q ss_pred             ccccCCcc-C-hhH---HHhCCceEecCCCCC-CchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCC
Q 020301           93 MAVGYNNV-D-VNA---ANKYGIAVGNTPGVL-TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ  166 (328)
Q Consensus        93 ~g~G~d~i-d-~~~---~~~~gI~v~n~p~~~-~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~  166 (328)
                      .|+|+|+| | +++   +.++||+|+|+++++ +.+||||++++||+++|++..+++.+++|.|..+     .+++++|+
T Consensus        66 ~~aG~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~-----~~~~l~g~  140 (315)
T 3pp8_A           66 LGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPL-----PEYTREEF  140 (315)
T ss_dssp             SSSCCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-----CCCCSTTC
T ss_pred             CCEecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCC-----CCCCcCCC
Confidence            99999999 7 887   678999999999874 7999999999999999999999999999988643     35799999


Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl  246 (328)
                      |+||||+|+||+++|+++ ++|||+|++||+++... +             +..  ......++++++++||+|++|+|+
T Consensus       141 tvGIiG~G~IG~~vA~~l-~~~G~~V~~~dr~~~~~-~-------------~~~--~~~~~~~l~ell~~aDiV~l~~Pl  203 (315)
T 3pp8_A          141 SVGIMGAGVLGAKVAESL-QAWGFPLRCWSRSRKSW-P-------------GVE--SYVGREELRAFLNQTRVLINLLPN  203 (315)
T ss_dssp             CEEEECCSHHHHHHHHHH-HTTTCCEEEEESSCCCC-T-------------TCE--EEESHHHHHHHHHTCSEEEECCCC
T ss_pred             EEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCchhh-h-------------hhh--hhcccCCHHHHHhhCCEEEEecCC
Confidence            999999999999999997 79999999999986431 0             100  011125899999999999999999


Q ss_pred             ChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccCCCeEEcCCCCCCC
Q 020301          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASAS  325 (328)
Q Consensus       247 t~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t  325 (328)
                      |++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+||+|
T Consensus       204 t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t  283 (315)
T 3pp8_A          204 TAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVT  283 (315)
T ss_dssp             CGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSCC
T ss_pred             chhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999986 47999999999999999998


Q ss_pred             c
Q 020301          326 K  326 (328)
Q Consensus       326 ~  326 (328)
                      .
T Consensus       284 ~  284 (315)
T 3pp8_A          284 R  284 (315)
T ss_dssp             C
T ss_pred             H
Confidence            5

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=3.1e-62  Score=472.61  Aligned_cols=277  Identities=22%  Similarity=0.236  Sum_probs=237.7

Q ss_pred             HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecC--CCCccHHHHHHhhccCCceEEEccccCCccChhHHH
Q 020301           29 WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (328)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~--~~~~~~~~l~~~~~l~~k~i~~~g~G~d~id~~~~~  106 (328)
                      +.+.|++.++++.+....  ..+++++.+.+. ++|++++..  ..++++++++++|+|  |+|++.|+|+||||+++|+
T Consensus        59 ~~~~l~~~g~~v~~~~~~--~~~~~~l~~~l~-~ad~li~~~~~~~~i~~~~l~~~p~L--k~I~~~g~G~d~iD~~aa~  133 (393)
T 2nac_A           59 LRKYLESNGHTLVVTSDK--DGPDSVFERELV-DADVVISQPFWPAYLTPERIAKAKNL--KLALTAGIGSDHVDLQSAI  133 (393)
T ss_dssp             CHHHHHHTTCEEEEESCC--SSTTSHHHHHHT-TCSEEEEBTTBCCCBCHHHHHHCTTC--CEEEESSSCCTTBCHHHHH
T ss_pred             HHHHHHhCCCEEEEecCC--CCCHHHHHHhcc-CCCEEEEcCccCCCCCHHHHhhCCCC--cEEEEcCccccccCHHHHh
Confidence            335777778787654322  223457777887 799998763  347899999999987  9999999999999999999


Q ss_pred             hCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHh
Q 020301          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (328)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~  186 (328)
                      ++||.|+|+|++++.+||||++++||++.|++..+++.+++|.|.. ......+.+|+|+|+||||+|+||+.+|+++ +
T Consensus       134 ~~gI~V~n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~-~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l-~  211 (393)
T 2nac_A          134 DRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNI-ADCVSHAYDLEAMHVGTVAAGRIGLAVLRRL-A  211 (393)
T ss_dssp             HTTCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCH-HHHHTTCCCCTTCEEEEECCSHHHHHHHHHH-G
T ss_pred             cCCEEEEeCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCc-cccccCCccCCCCEEEEEeECHHHHHHHHHH-H
Confidence            9999999999999999999999999999999999999999998842 1111235789999999999999999999996 7


Q ss_pred             cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCc
Q 020301          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA  266 (328)
Q Consensus       187 ~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga  266 (328)
                      +|||+|++||++......  ...+       |     .....++++++++||+|++|+|+|++|+++|+++.|++||+|+
T Consensus       212 a~G~~V~~~d~~~~~~~~--~~~~-------G-----~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~ga  277 (393)
T 2nac_A          212 PFDVHLHYTDRHRLPESV--EKEL-------N-----LTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGA  277 (393)
T ss_dssp             GGTCEEEEECSSCCCHHH--HHHH-------T-----CEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTE
T ss_pred             hCCCEEEEEcCCccchhh--Hhhc-------C-----ceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCC
Confidence            999999999998643211  0111       1     1123589999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccCCCeEEcCCCCCCCc
Q 020301          267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       267 ~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~  326 (328)
                      +|||+|||+++|++||++||++|+|+||+||||++||++ ++|||++|||++|||+|++|.
T Consensus       278 ilIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T~  338 (393)
T 2nac_A          278 YIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTL  338 (393)
T ss_dssp             EEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCSH
T ss_pred             EEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCcH
Confidence            999999999999999999999999999999999999975 579999999999999999985

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=2.4e-62  Score=470.63  Aligned_cols=291  Identities=23%  Similarity=0.255  Sum_probs=246.1

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecC--CCCccHHHHHHhhccCCceEE
Q 020301           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFS   91 (328)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~--~~~~~~~~l~~~~~l~~k~i~   91 (328)
                      .+++||+.+.... .+.+.|++.++++.+....  ..+.+++.+.+. ++|++++..  ..++++++++++|+|  |+|+
T Consensus        16 ~~~~vl~~d~~~~-~~~~~l~~~~~~v~~~~~~--~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~~~l~~~~~L--k~I~   89 (364)
T 2j6i_A           16 DEEKLYGCTENKL-GIANWLKDQGHELITTSDK--EGGNSVLDQHIP-DADIIITTPFHPAYITKERIDKAKKL--KLVV   89 (364)
T ss_dssp             HCTTCTTBTTTGG-GCHHHHHHTTCEEEEESCC--SSTTSHHHHHGG-GCSEEEECTTSCCCBCHHHHHHCTTC--CEEE
T ss_pred             cCceEEEecCccH-HHHHHHHhCCCEEEEcCCC--CCCHHHHHHHhh-CCeEEEecCcCCCCCCHHHHhhCCCC--eEEE
Confidence            3566777666544 3456778778887654432  124577888887 799998754  246899999999987  9999


Q ss_pred             EccccCCccChhHHHhC--CceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEE
Q 020301           92 NMAVGYNNVDVNAANKY--GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (328)
Q Consensus        92 ~~g~G~d~id~~~~~~~--gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvg  169 (328)
                      +.|+|+|+||+++|+++  ||.|+|+||+++.+||||++++||++.|++..+++.+++|.|.. ......+.+|+|+|+|
T Consensus        90 ~~~~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~-~~~~~~~~~l~g~tvg  168 (364)
T 2j6i_A           90 VAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEV-AAIAKDAYDIEGKTIA  168 (364)
T ss_dssp             ESSSCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCH-HHHHTTCCCSTTCEEE
T ss_pred             ECCcccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCc-CcccCCcccCCCCEEE
Confidence            99999999999999999  99999999999999999999999999999999999999998842 1111246799999999


Q ss_pred             EEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCCh
Q 020301          170 VIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK  248 (328)
Q Consensus       170 IiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~  248 (328)
                      |||+|+||+.+|+++ ++|||+ |++||++..+...  ...       .|     .....++++++++||+|++|+|+|+
T Consensus       169 IIG~G~IG~~vA~~l-~~~G~~~V~~~d~~~~~~~~--~~~-------~g-----~~~~~~l~ell~~aDvV~l~~P~t~  233 (364)
T 2j6i_A          169 TIGAGRIGYRVLERL-VPFNPKELLYYDYQALPKDA--EEK-------VG-----ARRVENIEELVAQADIVTVNAPLHA  233 (364)
T ss_dssp             EECCSHHHHHHHHHH-GGGCCSEEEEECSSCCCHHH--HHH-------TT-----EEECSSHHHHHHTCSEEEECCCCST
T ss_pred             EECcCHHHHHHHHHH-HhCCCcEEEEECCCccchhH--HHh-------cC-----cEecCCHHHHHhcCCEEEECCCCCh
Confidence            999999999999997 799997 9999987643211  011       11     1223589999999999999999999


Q ss_pred             hhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccC--C---CeEEcCCCC
Q 020301          249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEM--K---NAIVVPHIA  322 (328)
Q Consensus       249 ~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~--~---nvilTPHia  322 (328)
                      +|+++|+++.|+.||+|++|||+|||+++|++||++||++|+|+||+||||++||++ ++|||++  |   ||++|||+|
T Consensus       234 ~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia  313 (364)
T 2j6i_A          234 GTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYS  313 (364)
T ss_dssp             TTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCG
T ss_pred             HHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccC
Confidence            999999999999999999999999999999999999999999999999999999975 5799999  9   999999999


Q ss_pred             CCCc
Q 020301          323 SASK  326 (328)
Q Consensus       323 ~~t~  326 (328)
                      |+|.
T Consensus       314 ~~t~  317 (364)
T 2j6i_A          314 GTTL  317 (364)
T ss_dssp             GGSH
T ss_pred             cCCH
Confidence            9985

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=7e-60  Score=448.34  Aligned_cols=282  Identities=29%  Similarity=0.453  Sum_probs=245.5

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHH-HHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEc
Q 020301           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVED-IIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (328)
Q Consensus        15 ~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (328)
                      +++|+++.++++. +.+.|++. +++.....   ..+.++ +.+.+. ++|+++++...++++++++++|+|  |+|++.
T Consensus        23 ~~~vl~~~~~~~~-~~~~l~~~-~~~~~~~~---~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~p~L--k~I~~~   94 (333)
T 3ba1_A           23 AIGVLMMCPMSTY-LEQELDKR-FKLFRYWT---QPAQRDFLALQAE-SIRAVVGNSNAGADAELIDALPKL--EIVSSF   94 (333)
T ss_dssp             CCEEEECSCCCHH-HHHHHHHH-SEEEEGGG---CSSHHHHHHHHTT-TEEEEEECSSSCBCHHHHHHCTTC--CEEEES
T ss_pred             CCEEEEeCCCCHH-HHHHHHhc-CCEEEecC---CCChHHHHHHHhC-CCEEEEEcCCCCCCHHHHhhCCCC--cEEEEc
Confidence            4689999887753 46777653 56554321   123455 455555 799999877778999999999987  999999


Q ss_pred             cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEec
Q 020301           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (328)
Q Consensus        94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~  173 (328)
                      |+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|. +. ....+.+++|+|+||||+
T Consensus        95 ~~G~d~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~-~~~~~~~l~g~~vgIIG~  172 (333)
T 3ba1_A           95 SVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK-FG-DFKLTTKFSGKRVGIIGL  172 (333)
T ss_dssp             SSCCTTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGG-GC-CCCCCCCCTTCCEEEECC
T ss_pred             CccccccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCC-cc-ccccccccCCCEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999985 21 113468999999999999


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhcc
Q 020301          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (328)
Q Consensus       174 G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~l  253 (328)
                      |+||+.+|+++ ++|||+|++||++....              .     +.....++++++++||+|++|+|++++|+++
T Consensus       173 G~iG~~vA~~l-~~~G~~V~~~dr~~~~~--------------~-----g~~~~~~l~ell~~aDvVil~vP~~~~t~~l  232 (333)
T 3ba1_A          173 GRIGLAVAERA-EAFDCPISYFSRSKKPN--------------T-----NYTYYGSVVELASNSDILVVACPLTPETTHI  232 (333)
T ss_dssp             SHHHHHHHHHH-HTTTCCEEEECSSCCTT--------------C-----CSEEESCHHHHHHTCSEEEECSCCCGGGTTC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCCchhc--------------c-----CceecCCHHHHHhcCCEEEEecCCChHHHHH
Confidence            99999999997 79999999999986431              0     1123468999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCCCc
Q 020301          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       254 i~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~  326 (328)
                      ++++.|+.||+|++|||+|||.++|+++|.++|++|+++||+||||++||.+++|||++|||++|||+|++|.
T Consensus       233 i~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~L~~~~nviltPH~~~~t~  305 (333)
T 3ba1_A          233 INREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTV  305 (333)
T ss_dssp             BCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCCGGGGGCTTEEECSSCTTCSH
T ss_pred             hhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCcchhhcCCCEEECCcCCCCCH
Confidence            9999999999999999999999999999999999999999999999999987789999999999999999984

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=7.8e-59  Score=441.25  Aligned_cols=294  Identities=32%  Similarity=0.461  Sum_probs=253.5

Q ss_pred             CCCCeEEEEeCCCCchHHHHHHHhC-CCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHh-hccCCce
Q 020301           12 PNGKYRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKA   89 (328)
Q Consensus        12 ~~~~~~vlv~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~l~~k~   89 (328)
                      |.++|||+++.++++ .+.+.|++. ++++.... .+...+++++.+.+. ++|++++....++++++++++ |+|  |+
T Consensus         5 ~~~~~~il~~~~~~~-~~~~~l~~~~~~~v~~~~-~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~l~~~~~~L--k~   79 (330)
T 2gcg_A            5 PVRLMKVFVTRRIPA-EGRVALARAADCEVEQWD-SDEPIPAKELERGVA-GAHGLLCLLSDHVDKRILDAAGANL--KV   79 (330)
T ss_dssp             --CCEEEEESSCCCH-HHHHHHHHCTTEEEEECC-SSSCCCHHHHHHHHT-TCSEEEECTTSCBCHHHHHHHCTTC--CE
T ss_pred             CCCCCEEEEECCCCH-HHHHHHHhcCCceEEEec-CCCCCCHHHHHHHhc-CCeEEEECCCCCCCHHHHHhcCCCc--eE
Confidence            567789999887765 456777765 35665432 223457889988887 799999876678999999999 887  99


Q ss_pred             EEEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEE
Q 020301           90 FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (328)
Q Consensus        90 i~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvg  169 (328)
                      |++.|+|+|+||+++++++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..|.+....|.++.|+|+|
T Consensus        80 I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vg  159 (330)
T 2gcg_A           80 ISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVG  159 (330)
T ss_dssp             EEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEE
T ss_pred             EEECCcccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999997775443457899999999


Q ss_pred             EEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChh
Q 020301          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (328)
Q Consensus       170 IiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~  249 (328)
                      |||+|.||+.+|+++ ++||++|++||++..... . ..       ..+     .. ..++++++++||+|++|+|++++
T Consensus       160 IIG~G~iG~~iA~~l-~~~G~~V~~~d~~~~~~~-~-~~-------~~g-----~~-~~~l~e~l~~aDvVi~~vp~~~~  223 (330)
T 2gcg_A          160 IIGLGRIGQAIARRL-KPFGVQRFLYTGRQPRPE-E-AA-------EFQ-----AE-FVSTPELAAQSDFIVVACSLTPA  223 (330)
T ss_dssp             EECCSHHHHHHHHHH-GGGTCCEEEEESSSCCHH-H-HH-------TTT-----CE-ECCHHHHHHHCSEEEECCCCCTT
T ss_pred             EECcCHHHHHHHHHH-HHCCCEEEEECCCCcchh-H-HH-------hcC-----ce-eCCHHHHHhhCCEEEEeCCCChH
Confidence            999999999999997 799999999998764221 1 00       111     11 23899999999999999999999


Q ss_pred             hhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccCCCeEEcCCCCCCCc
Q 020301          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       250 t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~  326 (328)
                      |+++++++.++.||+|++|||+|||+++|+++|.++|++|++.||++|||++||++ ++|||++|||++|||+|+.|.
T Consensus       224 t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~  301 (330)
T 2gcg_A          224 TEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATH  301 (330)
T ss_dssp             TTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBH
T ss_pred             HHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcH
Confidence            99999999999999999999999999999999999999999999999999999964 579999999999999999984

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=1.4e-59  Score=448.48  Aligned_cols=290  Identities=28%  Similarity=0.412  Sum_probs=239.8

Q ss_pred             CCCCeEEEEeCCCC-chHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceE
Q 020301           12 PNGKYRVVSTKPMP-GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAF   90 (328)
Q Consensus        12 ~~~~~~vlv~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i   90 (328)
                      +.++++|++.+... ..+ .+.++. ..++..+.    ..+.+|+.+.+.+++|++++....++++++++++|+|  |+|
T Consensus        18 ~~~kp~i~~l~~~~~~~~-~~~l~~-~~~~~~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L--k~I   89 (347)
T 1mx3_A           18 GSHMPLVALLDGRDCTVE-MPILKD-VATVAFCD----AQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKAL--RII   89 (347)
T ss_dssp             ---CCEEEESSCSCCTTT-HHHHTT-TCEEEECC----CSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSC--CEE
T ss_pred             CCCCCEEEEEcCCcchhh-HHHhhc-cceEEecC----CCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCC--CEE
Confidence            45678888876422 112 355654 34555432    2245666655422688887776678999999999987  999


Q ss_pred             EEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCc----c-cccccCC
Q 020301           91 SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL----F-VGNLLKG  165 (328)
Q Consensus        91 ~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~----~-~~~~l~g  165 (328)
                      ++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|.. ....    . .+.++.|
T Consensus        90 ~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~-~~~~~~~~~~~~~~l~g  168 (347)
T 1mx3_A           90 VRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQ-SVEQIREVASGAARIRG  168 (347)
T ss_dssp             EESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCC-SHHHHHHHTTTCCCCTT
T ss_pred             EEcccccCcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCccc-ccccccccccCccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999842 1100    1 1268999


Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      +|+||||+|+||+.+|+++ ++|||+|++||++..+....   .+       |     .....++++++++||+|++|+|
T Consensus       169 ~tvGIIG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~---~~-------g-----~~~~~~l~ell~~aDvV~l~~P  232 (347)
T 1mx3_A          169 ETLGIIGLGRVGQAVALRA-KAFGFNVLFYDPYLSDGVER---AL-------G-----LQRVSTLQDLLFHSDCVTLHCG  232 (347)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HTTTCEEEEECTTSCTTHHH---HH-------T-----CEECSSHHHHHHHCSEEEECCC
T ss_pred             CEEEEEeECHHHHHHHHHH-HHCCCEEEEECCCcchhhHh---hc-------C-----CeecCCHHHHHhcCCEEEEcCC
Confidence            9999999999999999997 79999999999986532111   11       1     1233589999999999999999


Q ss_pred             CChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCC--CCCcccCCCeEEcCCCCC
Q 020301          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHIAS  323 (328)
Q Consensus       246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~--~~~L~~~~nvilTPHia~  323 (328)
                      ++++|+++|+++.|++||+|++|||+|||+++|+++|++||++|+|+||++|||+.||++  ++|||.+|||++|||+|+
T Consensus       233 ~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~  312 (347)
T 1mx3_A          233 LNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  312 (347)
T ss_dssp             CCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             CCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHH
Confidence            999999999999999999999999999999999999999999999999999999999975  479999999999999999


Q ss_pred             CCc
Q 020301          324 ASK  326 (328)
Q Consensus       324 ~t~  326 (328)
                      +|.
T Consensus       313 ~t~  315 (347)
T 1mx3_A          313 YSE  315 (347)
T ss_dssp             CCH
T ss_pred             HHH
Confidence            985

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=2e-58  Score=439.14  Aligned_cols=289  Identities=39%  Similarity=0.663  Sum_probs=251.2

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEcc
Q 020301           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (328)
Q Consensus        15 ~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g   94 (328)
                      ++||+++.++++ .+.+.|++. +++++... ....+++++.+.+. ++|+++++...++++++++++|+|  |+|++.|
T Consensus         2 ~~~il~~~~~~~-~~~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~l~~~~~L--k~I~~~~   75 (334)
T 2dbq_A            2 KPKVFITREIPE-VGIKMLEDE-FEVEVWGD-EKEIPREILLKKVK-EVDALVTMLSERIDKEVFENAPKL--RIVANYA   75 (334)
T ss_dssp             CCEEEESSCCCH-HHHHHHHTT-SEEEECCC-SSCCCHHHHHHHTT-SCSEEEECTTSCBCHHHHHTCTTC--CEEEESS
T ss_pred             CcEEEEecCCCH-HHHHHHHhc-CCEEEecC-CCCCCHHHHHHHhc-CcEEEEEcCCCCCCHHHHhhCCCc--eEEEECC
Confidence            468888887765 456777653 56664332 22357888888887 799999887678999999999987  9999999


Q ss_pred             ccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCC----CCCCCcccccccCCCEEEE
Q 020301           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGV  170 (328)
Q Consensus        95 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~----~w~~~~~~~~~l~g~tvgI  170 (328)
                      +|+|+||+++++++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|.    .|.+....+.++.|+|+||
T Consensus        76 ~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgI  155 (334)
T 2dbq_A           76 VGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGI  155 (334)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEE
T ss_pred             cccccccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEE
Confidence            999999999999999999999999999999999999999999999999999999996    5654334578999999999


Q ss_pred             EecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhh
Q 020301          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (328)
Q Consensus       171 iG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t  250 (328)
                      ||+|.||+.+|+++ ++||++|++||++......   ..+       +.      ...++++++++||+|++|+|++++|
T Consensus       156 IG~G~iG~~iA~~l-~~~G~~V~~~d~~~~~~~~---~~~-------g~------~~~~l~~~l~~aDvVil~vp~~~~t  218 (334)
T 2dbq_A          156 IGLGRIGQAIAKRA-KGFNMRILYYSRTRKEEVE---REL-------NA------EFKPLEDLLRESDFVVLAVPLTRET  218 (334)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSSCCHHHH---HHH-------CC------EECCHHHHHHHCSEEEECCCCCTTT
T ss_pred             EccCHHHHHHHHHH-HhCCCEEEEECCCcchhhH---hhc-------Cc------ccCCHHHHHhhCCEEEECCCCChHH
Confidence            99999999999997 6999999999998754211   111       11      2358999999999999999999999


Q ss_pred             hccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCCCc
Q 020301          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       251 ~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~  326 (328)
                      +++++++.++.||+|++|||+|||.++|+++|.++|++|+++||++|||++||..++|||++|||++|||+|+.|.
T Consensus       219 ~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP~~~~~L~~~~~vi~tPh~~~~t~  294 (334)
T 2dbq_A          219 YHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASF  294 (334)
T ss_dssp             TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCCHHHHHCTTEEECSSCTTCSH
T ss_pred             HHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCCCCCchhhcCCCEEECCccCCCcH
Confidence            9999999999999999999999999999999999999999999999999999955679999999999999999985

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.5e-58  Score=439.60  Aligned_cols=284  Identities=32%  Similarity=0.499  Sum_probs=248.1

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEcc
Q 020301           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (328)
Q Consensus        15 ~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g   94 (328)
                      ++||+++.++++. ..+.|++. +++++..    ..+.+++.+.+. ++|+++++...++++++++++|+|  |+|++.|
T Consensus         2 ~~~il~~~~~~~~-~~~~l~~~-~~~~~~~----~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~   72 (333)
T 2d0i_A            2 RPKVGVLLKMKRE-ALEELKKY-ADVEIIL----YPSGEELKGVIG-RFDGIIVSPTTKITREVLENAERL--KVISCHS   72 (333)
T ss_dssp             CSEEEECSCCCHH-HHHHHHTT-SEEEECC----SCCHHHHHHHGG-GCSEEEECTTSCBCHHHHTTCTTC--CEEEESS
T ss_pred             CcEEEEECCCCHH-HHHHHHhc-CCEEEeC----CCCHHHHHHHhc-CCEEEEECCCCCCCHHHHhhCCCc--eEEEECC
Confidence            4689998887754 46777664 5666532    257788888887 799999877778999999999987  9999999


Q ss_pred             ccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccc----cccCCCEEEE
Q 020301           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG----NLLKGQTVGV  170 (328)
Q Consensus        95 ~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~----~~l~g~tvgI  170 (328)
                      +|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..|.. ...|    .+|.|+|+||
T Consensus        73 ~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~-~~~~~~~~~~l~g~~vgI  151 (333)
T 2d0i_A           73 AGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAK-IWTGFKRIESLYGKKVGI  151 (333)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHH-HHTTSCCCCCSTTCEEEE
T ss_pred             cccccccHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcc-cccCCcccCCCCcCEEEE
Confidence            9999999999999999999999999999999999999999999999999999999864421 1235    7899999999


Q ss_pred             EecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhh
Q 020301          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (328)
Q Consensus       171 iG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t  250 (328)
                      ||+|.||+.+|+++ ++|||+|++||++......   ..+       +     . ...++++++++||+|++|+|++++|
T Consensus       152 IG~G~iG~~vA~~l-~~~G~~V~~~d~~~~~~~~---~~~-------g-----~-~~~~l~e~l~~aDiVil~vp~~~~t  214 (333)
T 2d0i_A          152 LGMGAIGKAIARRL-IPFGVKLYYWSRHRKVNVE---KEL-------K-----A-RYMDIDELLEKSDIVILALPLTRDT  214 (333)
T ss_dssp             ECCSHHHHHHHHHH-GGGTCEEEEECSSCCHHHH---HHH-------T-----E-EECCHHHHHHHCSEEEECCCCCTTT
T ss_pred             EccCHHHHHHHHHH-HHCCCEEEEECCCcchhhh---hhc-------C-----c-eecCHHHHHhhCCEEEEcCCCChHH
Confidence            99999999999997 7999999999998764211   111       1     1 1248999999999999999999999


Q ss_pred             hccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCC-CeEEcCCCCCCCc
Q 020301          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK-NAIVVPHIASASK  326 (328)
Q Consensus       251 ~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~-nvilTPHia~~t~  326 (328)
                      +++++++.|+.||+| +|||+|||.++|+++|.++|++|+++||++|||++||++++|||++| ||++|||+|++|.
T Consensus       215 ~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~~nviltPh~~~~t~  290 (333)
T 2d0i_A          215 YHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLAL  290 (333)
T ss_dssp             TTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCSCCGGGGCTTTEEECCSCTTCCH
T ss_pred             HHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCCCchHHcCCCCEEEcCccCCCcH
Confidence            999999999999999 99999999999999999999999999999999999997778999999 9999999999985

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=4.1e-59  Score=447.80  Aligned_cols=258  Identities=28%  Similarity=0.415  Sum_probs=223.0

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEc
Q 020301           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (328)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (328)
                      ++|||+++..++.  ..+.+++.+ ++.....  ...+.++    +. ++|+++++..+++++++++ .++|  |+|++.
T Consensus         2 ~mmkIl~~~~~p~--~~~~~~~~~-~v~~~~~--~~~~~~~----l~-~ad~li~~~~~~v~~~ll~-~~~L--k~I~~~   68 (381)
T 3oet_A            2 NAMKILVDENMPY--ARELFSRLG-EVKAVPG--RPIPVEE----LN-HADALMVRSVTKVNESLLS-GTPI--NFVGTA   68 (381)
T ss_dssp             CCCEEEEETTSTT--HHHHHTTSS-EEEEECC-----CHHH----HT-TCSEEEECTTSCBSHHHHT-TSCC--CEEEES
T ss_pred             CceEEEECCCCcH--HHHHHhhCC-cEEEeCC--CCCCHHH----HC-CCEEEEECCCCCCCHHHHc-CCCC--EEEEEc
Confidence            4689999998875  346676654 6665432  2345544    34 7999999887889999998 5555  999999


Q ss_pred             cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEec
Q 020301           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (328)
Q Consensus        94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~  173 (328)
                      |+|+||||+++++++||.|+|+||+|+.+||||++++||++.|+.                     |.+++|+|+||||+
T Consensus        69 ~~G~D~iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~---------------------g~~l~gktvGIIGl  127 (381)
T 3oet_A           69 TAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD---------------------GFSLRDRTIGIVGV  127 (381)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT---------------------TCCGGGCEEEEECC
T ss_pred             cccccccCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc---------------------CCccCCCEEEEEeE
Confidence            999999999999999999999999999999999999999999862                     25799999999999


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChh----
Q 020301          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----  249 (328)
Q Consensus       174 G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~----  249 (328)
                      |+||+++|+++ ++|||+|++|||+....               +    ......++++++++||+|++|+|+|++    
T Consensus       128 G~IG~~vA~~l-~a~G~~V~~~d~~~~~~---------------~----~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~  187 (381)
T 3oet_A          128 GNVGSRLQTRL-EALGIRTLLCDPPRAAR---------------G----DEGDFRTLDELVQEADVLTFHTPLYKDGPYK  187 (381)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECHHHHHT---------------T----CCSCBCCHHHHHHHCSEEEECCCCCCSSTTC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCChHHh---------------c----cCcccCCHHHHHhhCCEEEEcCcCCcccccc
Confidence            99999999997 79999999999854321               0    011347999999999999999999999    


Q ss_pred             hhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCCCc
Q 020301          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       250 t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~  326 (328)
                      |+++|+++.|++||+|++|||+|||++||++||++||++|+++||+||||++||+++++||.++ +++|||+||+|.
T Consensus       188 T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~~~L~~~~-~i~TPHiag~t~  263 (381)
T 3oet_A          188 TLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAV-DIGTSHIAGYTL  263 (381)
T ss_dssp             CTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHHHS-SEECSSCTTCCH
T ss_pred             chhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCCCcchhhhCC-EEECCccCcCcH
Confidence            9999999999999999999999999999999999999999999999999999999888899875 899999999984

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=2.7e-58  Score=440.36  Aligned_cols=290  Identities=27%  Similarity=0.386  Sum_probs=242.8

Q ss_pred             CeEEEEeCC-CC-chHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhc----CCccEEEec------CCCCccHHHHHHh
Q 020301           15 KYRVVSTKP-MP-GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG----DKCDGVIGQ------LTEDWGETLFAAL   82 (328)
Q Consensus        15 ~~~vlv~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~----~~~d~li~~------~~~~~~~~~l~~~   82 (328)
                      ++|||++.+ ++ .....+.|++ .+++....    ..+++++.+.+.    +++|+++..      ...++++++++++
T Consensus         3 ~~~vl~~~~~~~~~~~~~~~l~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~   77 (348)
T 2w2k_A            3 RPRVLLLGDPARHLDDLWSDFQQ-KFEVIPAN----LTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHL   77 (348)
T ss_dssp             CCEEEECSSCCSSCHHHHHHHHH-HSEEEECC----CCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTS
T ss_pred             CcEEEEECCccccChHHHHHHHh-cceEEecC----CCCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhc
Confidence            568998887 53 2233456655 35665432    246889988876    258888864      2358999999999


Q ss_pred             h-ccCCceEEEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCC---CCCCCC-Cc
Q 020301           83 S-RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL---YDGWLP-NL  157 (328)
Q Consensus        83 ~-~l~~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~---w~~w~~-~~  157 (328)
                      | +|  |+|++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.   |..+.. ..
T Consensus        78 ~~~L--k~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~  155 (348)
T 2w2k_A           78 PSSL--KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIG  155 (348)
T ss_dssp             CTTC--CEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             ccCc--eEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccccc
Confidence            8 46  99999999999999999999999999999999999999999999999999999999999998   731100 01


Q ss_pred             ccccccCCCEEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc
Q 020301          158 FVGNLLKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (328)
Q Consensus       158 ~~~~~l~g~tvgIiG~G~IG~~vA~~l~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (328)
                      ..+.+++|+|+||||+|.||+.+|+++ + +|||+|++||++.......  ..+       +     .....++++++++
T Consensus       156 ~~~~~l~g~~vgIIG~G~IG~~vA~~l-~~~~G~~V~~~d~~~~~~~~~--~~~-------g-----~~~~~~l~ell~~  220 (348)
T 2w2k_A          156 KSAHNPRGHVLGAVGLGAIQKEIARKA-VHGLGMKLVYYDVAPADAETE--KAL-------G-----AERVDSLEELARR  220 (348)
T ss_dssp             TTCCCSTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEECSSCCCHHHH--HHH-------T-----CEECSSHHHHHHH
T ss_pred             ccCcCCCCCEEEEEEECHHHHHHHHHH-HHhcCCEEEEECCCCcchhhH--hhc-------C-----cEEeCCHHHHhcc
Confidence            246799999999999999999999996 7 9999999999986432110  000       1     1122489999999


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeE
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAI  316 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi  316 (328)
                      ||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|.++|++|+|.||++|||++||..++||+++|||+
T Consensus       221 aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~nvi  300 (348)
T 2w2k_A          221 SDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVT  300 (348)
T ss_dssp             CSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTTSCCHHHHTSSSEE
T ss_pred             CCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCCCCCchhhcCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999996567899999999


Q ss_pred             EcCCCCCCCc
Q 020301          317 VVPHIASASK  326 (328)
Q Consensus       317 lTPHia~~t~  326 (328)
                      +|||+|++|.
T Consensus       301 ltPH~~~~t~  310 (348)
T 2w2k_A          301 LTTHIGGVAI  310 (348)
T ss_dssp             ECCSCTTCSH
T ss_pred             EcCcCCCCCH
Confidence            9999999985

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=2.1e-58  Score=433.17  Aligned_cols=262  Identities=23%  Similarity=0.350  Sum_probs=227.8

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 020301           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (328)
Q Consensus        16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~   95 (328)
                      |||+++.++++ .+.+.|++.++++.   .           +.+. ++|+++++.   .+.++++++|+|  |+|++.|+
T Consensus         1 m~il~~~~~~~-~~~~~l~~~~~~v~---~-----------~~~~-~~d~~i~~~---~~~~~l~~~~~L--k~I~~~~~   59 (303)
T 1qp8_A            1 MELYVNFELPP-EAEEELRKYFKIVR---G-----------GDLG-NVEAALVSR---ITAEELAKMPRL--KFIQVVTA   59 (303)
T ss_dssp             CEEECCSCCCH-HHHHHHHTTCEEEC---S-----------SCCT-TBCCCCBSC---CCHHHHHHCTTC--CCEEBSSS
T ss_pred             CEEEEccCCCH-HHHHHHHhcCCccc---h-----------hhhC-CCEEEEECC---CCHHHHhhCCCC--cEEEECCc
Confidence            47888888765 45677876654431   1           1233 689888764   346899999987  99999999


Q ss_pred             cCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH
Q 020301           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (328)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~  175 (328)
                      |+|+||++++ ++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..+.    .+.++.|+|+||||+|+
T Consensus        60 G~d~id~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~----~~~~l~g~~vgIIG~G~  134 (303)
T 1qp8_A           60 GLDHLPWESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV----EIPLIQGEKVAVLGLGE  134 (303)
T ss_dssp             CCTTSCCTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS----CCCCCTTCEEEEESCST
T ss_pred             CcccccHHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC----CCCCCCCCEEEEEccCH
Confidence            9999999985 799999999999999999999999999999999999999999885321    23589999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhcccc
Q 020301          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN  255 (328)
Q Consensus       176 IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~  255 (328)
                      ||+.+|+++ ++|||+|++|||+..+                .    +.....++++++++||+|++|+|++++|+++|+
T Consensus       135 IG~~~A~~l-~~~G~~V~~~dr~~~~----------------~----~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~  193 (303)
T 1qp8_A          135 IGTRVGKIL-AALGAQVRGFSRTPKE----------------G----PWRFTNSLEEALREARAAVCALPLNKHTRGLVK  193 (303)
T ss_dssp             HHHHHHHHH-HHTTCEEEEECSSCCC----------------S----SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBC
T ss_pred             HHHHHHHHH-HHCCCEEEEECCCccc----------------c----CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhC
Confidence            999999997 7999999999997641                0    112346899999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCC-CCCCCC-CCCcccCCCeEEcCCCCCC
Q 020301          256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF-EDEPYM-KPGLSEMKNAIVVPHIASA  324 (328)
Q Consensus       256 ~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~-~~EP~~-~~~L~~~~nvilTPHia~~  324 (328)
                      ++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+|||| ++||++ ++|||++|||++|||+||+
T Consensus       194 ~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltPH~~~~  264 (303)
T 1qp8_A          194 YQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGG  264 (303)
T ss_dssp             HHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSSS
T ss_pred             HHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECCCcCCC
Confidence            99999999999999999999999999999999999999999999 889986 5799999999999999998

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=1.5e-56  Score=449.84  Aligned_cols=284  Identities=31%  Similarity=0.442  Sum_probs=249.7

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEc
Q 020301           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (328)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (328)
                      ++|||++++++++. ..+.|++. +++++..    ..+++++.+.+. ++|+++++..+++++++++++|+|  |+|++.
T Consensus         3 ~~~~vl~~~~~~~~-~~~~l~~~-~~v~~~~----~~~~~~~~~~~~-~~d~li~~~~~~~~~~~l~~~~~L--k~i~~~   73 (529)
T 1ygy_A            3 SLPVVLIADKLAPS-TVAALGDQ-VEVRWVD----GPDRDKLLAAVP-EADALLVRSATTVDAEVLAAAPKL--KIVARA   73 (529)
T ss_dssp             CCCEEEECSSCCGG-GGTTSCSS-SEEEECC----TTSHHHHHHHGG-GCSEEEECSSSCBCHHHHHTCTTC--CEEEES
T ss_pred             CCcEEEEeCCCCHH-HHHHHhcC-ceEEEcC----CCCHHHHHHHhc-CCEEEEEcCCCCCCHHHHhhCCCC--cEEEEC
Confidence            46799999888754 34566554 6766532    246789988887 799999987788999999999987  999999


Q ss_pred             cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEec
Q 020301           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (328)
Q Consensus        94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~  173 (328)
                      |+|+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|.|..   ..+.|.+++|+|+||||+
T Consensus        74 ~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~---~~~~~~~l~g~~vgIIG~  150 (529)
T 1ygy_A           74 GVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKR---SSFSGTEIFGKTVGVVGL  150 (529)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCG---GGCCBCCCTTCEEEEECC
T ss_pred             CcCcCccCHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcc---cCcCccccCCCEEEEEee
Confidence            99999999999999999999999999999999999999999999999999999998752   224578999999999999


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhcc
Q 020301          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (328)
Q Consensus       174 G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~l  253 (328)
                      |+||+++|+++ ++|||+|++|||+......   .       ..|     .. ..++++++++||+|++|+|++++|+++
T Consensus       151 G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~a---~-------~~g-----~~-~~~l~e~~~~aDvV~l~~P~~~~t~~~  213 (529)
T 1ygy_A          151 GRIGQLVAQRI-AAFGAYVVAYDPYVSPARA---A-------QLG-----IE-LLSLDDLLARADFISVHLPKTPETAGL  213 (529)
T ss_dssp             SHHHHHHHHHH-HTTTCEEEEECTTSCHHHH---H-------HHT-----CE-ECCHHHHHHHCSEEEECCCCSTTTTTC
T ss_pred             CHHHHHHHHHH-HhCCCEEEEECCCCChhHH---H-------hcC-----cE-EcCHHHHHhcCCEEEECCCCchHHHHH
Confidence            99999999997 7999999999998643111   1       112     11 248999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCCCc
Q 020301          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       254 i~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~  326 (328)
                      ++++.++.||+|+++||++||+++|+++|+++|++|+++||++|||+.||..++|||++||+++|||++++|.
T Consensus       214 i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~  286 (529)
T 1ygy_A          214 IDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTA  286 (529)
T ss_dssp             BCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBH
T ss_pred             hCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCH
Confidence            9999999999999999999999999999999999999999999999999988889999999999999998774

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=5.4e-57  Score=420.44  Aligned_cols=228  Identities=26%  Similarity=0.387  Sum_probs=204.0

Q ss_pred             CccEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHH
Q 020301           62 KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA  141 (328)
Q Consensus        62 ~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~  141 (328)
                      ++|++++. ..++      ++|+|  |+|++.|+|+|+||+++|++++|.++| +|.++.+||||++++||++.|++..+
T Consensus        34 ~ad~li~~-~~~~------~~~~L--k~I~~~~~G~d~id~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~~  103 (290)
T 3gvx_A           34 DAEAQVIK-DRYV------LGKRT--KMIQAISAGVDHIDVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILEN  103 (290)
T ss_dssp             CCSEEEES-SCCC------CCSSC--CEEEECSSCCTTSCGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             hhhhhhhh-hhhh------hhhhh--HHHHHHhcCCceeecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhhhh
Confidence            79999984 3332      67877  999999999999999999987766655 58899999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCC
Q 020301          142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP  221 (328)
Q Consensus       142 ~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  221 (328)
                      ++.+++|.|...     ..+++.|+|+||||+|.||+++|+++ ++|||+|++|||+..+..              .   
T Consensus       104 ~~~~~~g~w~~~-----~~~~l~g~tvGIIGlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~--------------~---  160 (290)
T 3gvx_A          104 NELMKAGIFRQS-----PTTLLYGKALGILGYGGIGRRVAHLA-KAFGMRVIAYTRSSVDQN--------------V---  160 (290)
T ss_dssp             HHHHHTTCCCCC-----CCCCCTTCEEEEECCSHHHHHHHHHH-HHHTCEEEEECSSCCCTT--------------C---
T ss_pred             hhHhhhcccccC-----CceeeecchheeeccCchhHHHHHHH-HhhCcEEEEEeccccccc--------------c---
Confidence            999999988532     12689999999999999999999997 799999999999864310              0   


Q ss_pred             ccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCC
Q 020301          222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (328)
Q Consensus       222 ~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~  301 (328)
                        .....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||+++|++||++||++|++.||+||||++
T Consensus       161 --~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~  238 (290)
T 3gvx_A          161 --DVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWN  238 (290)
T ss_dssp             --SEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTT
T ss_pred             --ccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccC
Confidence              123459999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccCCCeEEcCCCC-CCCc
Q 020301          302 EPYMKPGLSEMKNAIVVPHIA-SASK  326 (328)
Q Consensus       302 EP~~~~~L~~~~nvilTPHia-~~t~  326 (328)
                      ||+  +|||++|||++|||+| ++|.
T Consensus       239 EP~--~pL~~~~nvilTPHiag~~t~  262 (290)
T 3gvx_A          239 EPE--ITETNLRNAILSPHVAGGMSG  262 (290)
T ss_dssp             TTS--CCSCCCSSEEECCSCSSCBTT
T ss_pred             Ccc--cchhhhhhhhcCccccCCccc
Confidence            998  8999999999999999 7764

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=7e-56  Score=426.23  Aligned_cols=256  Identities=28%  Similarity=0.432  Sum_probs=220.9

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 020301           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (328)
Q Consensus        16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~   95 (328)
                      |||+++..++..  .+.+++.+ ++......  ..+.+++    . ++|+++++..+++++++++ +|++  |+|++.|+
T Consensus         1 mkil~~~~~~~~--~~~~~~~~-~v~~~~~~--~~~~~~l----~-~ad~li~~~~~~~~~~~l~-~~~L--k~I~~~~~   67 (380)
T 2o4c_A            1 MRILADENIPVV--DAFFADQG-SIRRLPGR--AIDRAAL----A-EVDVLLVRSVTEVSRAALA-GSPV--RFVGTCTI   67 (380)
T ss_dssp             CEEEEETTCTTH--HHHHGGGS-EEEEECGG--GCSTTTT----T-TCSEEEECTTSCBCHHHHT-TSCC--CEEEECSS
T ss_pred             CEEEEecCchHH--HHHHHhCC-cEEEecCC--cCChHHH----C-CcEEEEEcCCCCCCHHHhc-CCCc--eEEEEcCc
Confidence            588888877652  46666554 55544321  2233332    3 7999999877789999998 8877  99999999


Q ss_pred             cCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH
Q 020301           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (328)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~  175 (328)
                      |+|+||+++++++||.|+|+||+|+.+||||++++||++.|++                     +.++.|+|+||||+|+
T Consensus        68 G~D~iD~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~---------------------~~~l~g~tvGIIGlG~  126 (380)
T 2o4c_A           68 GTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR---------------------GADLAERTYGVVGAGQ  126 (380)
T ss_dssp             CSTTBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH---------------------TCCGGGCEEEEECCSH
T ss_pred             ccchhhHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh---------------------hcccCCCEEEEEeCCH
Confidence            9999999999999999999999999999999999999999862                     2479999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChh----hh
Q 020301          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TY  251 (328)
Q Consensus       176 IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~----t~  251 (328)
                      ||+++|+++ ++|||+|++|||+....             ..+      ....++++++++||+|++|+|++++    |+
T Consensus       127 IG~~vA~~l-~~~G~~V~~~d~~~~~~-------------~~g------~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~  186 (380)
T 2o4c_A          127 VGGRLVEVL-RGLGWKVLVCDPPRQAR-------------EPD------GEFVSLERLLAEADVISLHTPLNRDGEHPTR  186 (380)
T ss_dssp             HHHHHHHHH-HHTTCEEEEECHHHHHH-------------STT------SCCCCHHHHHHHCSEEEECCCCCSSSSSCCT
T ss_pred             HHHHHHHHH-HHCCCEEEEEcCChhhh-------------ccC------cccCCHHHHHHhCCEEEEeccCccccccchh
Confidence            999999997 79999999999865321             001      1246899999999999999999999    99


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCCCc
Q 020301          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK  326 (328)
Q Consensus       252 ~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~  326 (328)
                      ++++++.|++||+|++|||+|||+++|++||+++|++|+|.||+||||++||+++++|+. +||++|||+||+|.
T Consensus       187 ~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~-~nvi~TPHiag~t~  260 (380)
T 2o4c_A          187 HLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPELAA-RCLIATPHIAGYSL  260 (380)
T ss_dssp             TSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHT-TCSEECSSCTTCCH
T ss_pred             hhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCCchhhcc-CCEEEccccCcCCH
Confidence            999999999999999999999999999999999999999999999999999988888887 59999999999985

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=100.00  E-value=1.8e-35  Score=292.15  Aligned_cols=197  Identities=16%  Similarity=0.212  Sum_probs=163.3

Q ss_pred             CceEE-EccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCC
Q 020301           87 GKAFS-NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG  165 (328)
Q Consensus        87 ~k~i~-~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g  165 (328)
                      ++.|+ ..++|+|++  ++++++||.|+|+|++|. +|||+       +.|++....+.+++| |.     ...+.++.|
T Consensus       214 l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~-------l~r~~~~~~~~l~~g-w~-----~~~g~~L~G  277 (494)
T 3d64_A          214 IKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKS-------KFDNLYGCRESLVDG-IK-----RATDVMIAG  277 (494)
T ss_dssp             CCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------HHHHHHHHHTTHHHH-HH-----HHHCCCCTT
T ss_pred             cEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHH-------HHhhhHhhhhhhhhh-hh-----hccccccCC
Confidence            37887 789999998  789999999999999999 99994       347776666666665 42     134678999


Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      +|+||||+|.||+.+|+++ ++|||+|++||+++....+..         ..|     . ...++++++++||+|++|+ 
T Consensus       278 ktVgIIG~G~IG~~vA~~l-~~~G~~V~v~d~~~~~~~~a~---------~~G-----~-~~~~l~ell~~aDiVi~~~-  340 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSL-RGLGATVWVTEIDPICALQAA---------MEG-----Y-RVVTMEYAADKADIFVTAT-  340 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HTTTCEEEEECSCHHHHHHHH---------TTT-----C-EECCHHHHTTTCSEEEECS-
T ss_pred             CEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCChHhHHHHH---------HcC-----C-EeCCHHHHHhcCCEEEECC-
Confidence            9999999999999999996 799999999999876432211         111     1 2368999999999999997 


Q ss_pred             CChhhhccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCccEEEEeCCCCCCCC-CCCcccC--CCeEEcCCC
Q 020301          246 LDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEM--KNAIVVPHI  321 (328)
Q Consensus       246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~--~nvilTPHi  321 (328)
                         +|+++|+++.|++||+|++|||+|||++ ||+++| +||++|+|+ +++||   ||++ ++|||.+  |||++| |+
T Consensus       341 ---~t~~lI~~~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv---~plp~~~pL~~l~~~nvv~t-H~  411 (494)
T 3d64_A          341 ---GNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDH---IIFPDGKRVILLAEGRLVNL-GC  411 (494)
T ss_dssp             ---SSSCSBCHHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEE---EECTTSCEEEEEGGGSBHHH-HT
T ss_pred             ---CcccccCHHHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEE---EECCCCCchhhcCCCCEEEE-eC
Confidence               7899999999999999999999999999 699999 999999987 55555   5654 4789988  999999 99


Q ss_pred             C-CCC
Q 020301          322 A-SAS  325 (328)
Q Consensus       322 a-~~t  325 (328)
                      | +.|
T Consensus       412 atg~~  416 (494)
T 3d64_A          412 ATGHP  416 (494)
T ss_dssp             SCCSC
T ss_pred             cCCCC
Confidence            9 544

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=100.00  E-value=3.3e-35  Score=289.23  Aligned_cols=200  Identities=15%  Similarity=0.160  Sum_probs=170.6

Q ss_pred             CCceEE-EccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccC
Q 020301           86 GGKAFS-NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLK  164 (328)
Q Consensus        86 ~~k~i~-~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~  164 (328)
                      +++.|+ ..++|+|++  +++.++||.++|+|++|. +|||       ++.|++....+.+++| |.+     ..+.++.
T Consensus       193 ~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r-----~~~~~l~  256 (479)
T 1v8b_A          193 KIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMR-----ATDFLIS  256 (479)
T ss_dssp             TCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHH-----HHCCCCT
T ss_pred             CeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhh-----ccccccC
Confidence            348888 789999998  789999999999999999 9999       4568888888888888 632     3457899


Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      |+|+||||+|.||+.+|+++ ++|||+|++||+++....+.         ...+     + ...++++++++||+|++|+
T Consensus       257 GktVgIIG~G~IG~~vA~~l-~~~G~~Viv~d~~~~~~~~a---------~~~g-----~-~~~~l~ell~~aDiVi~~~  320 (479)
T 1v8b_A          257 GKIVVICGYGDVGKGCASSM-KGLGARVYITEIDPICAIQA---------VMEG-----F-NVVTLDEIVDKGDFFITCT  320 (479)
T ss_dssp             TSEEEEECCSHHHHHHHHHH-HHHTCEEEEECSCHHHHHHH---------HTTT-----C-EECCHHHHTTTCSEEEECC
T ss_pred             CCEEEEEeeCHHHHHHHHHH-HhCcCEEEEEeCChhhHHHH---------HHcC-----C-EecCHHHHHhcCCEEEECC
Confidence            99999999999999999996 79999999999987643221         0112     1 2368999999999999994


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH--HHHcCCccEEEEeCCCCCCCCCCCcccC--CCeEEcC
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE--HLKQNPMFRVGLDVFEDEPYMKPGLSEM--KNAIVVP  319 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~--aL~~g~i~gaalDV~~~EP~~~~~L~~~--~nvilTP  319 (328)
                          +|+++|+++.|++||+|++|||+|||++ ||+++|.+  ||++|+|+ +++|||+.++  ++|||.+  |||++| 
T Consensus       321 ----~t~~lI~~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~plp~--~~~l~~l~~~nvv~t-  392 (479)
T 1v8b_A          321 ----GNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRITLPN--GNKIIVLARGRLLNL-  392 (479)
T ss_dssp             ----SSSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEECTT--SCEEEEEGGGSBHHH-
T ss_pred             ----ChhhhcCHHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEEECCC--CCeeeEecCCCEEEE-
Confidence                8899999999999999999999999999 99999999  99999998 9999984422  5789888  999999 


Q ss_pred             CCC-CCC
Q 020301          320 HIA-SAS  325 (328)
Q Consensus       320 Hia-~~t  325 (328)
                      |+| +.+
T Consensus       393 H~atghp  399 (479)
T 1v8b_A          393 GCATGHP  399 (479)
T ss_dssp             HSSCCSC
T ss_pred             eccCCCC
Confidence            999 543

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.96  E-value=6.2e-30  Score=238.55  Aligned_cols=215  Identities=15%  Similarity=0.095  Sum_probs=166.4

Q ss_pred             CCeEEEEeCCCCc-hHHHHHHHhCCCeEEEecCCCCC------CCHHHHHHHhcCCccEEEec----------------C
Q 020301           14 GKYRVVSTKPMPG-TRWINLLIEQDCRVEICTQKKTI------LSVEDIIALIGDKCDGVIGQ----------------L   70 (328)
Q Consensus        14 ~~~~vlv~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~------~~~e~~~~~~~~~~d~li~~----------------~   70 (328)
                      .+|||++...... ..+.+.|.+.++++.+...++..      ...+++.+.+. ++|++++.                .
T Consensus         4 ~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~ii~~~~~~~~~~~i~~~~~~~   82 (293)
T 3d4o_A            4 TGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWN-TVDAILLPISGTNEAGKVDTIFSNE   82 (293)
T ss_dssp             TTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGG-GCSEEECCTTCCCTTCBCCBSSCSC
T ss_pred             cCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHh-cCCEEEeccccccCCceeecccccC
Confidence            4678888764332 24567888889998765432211      12244555555 69999874                2


Q ss_pred             CCCccHHHHHHhhccCCceEEEccccCCccCh-hHHHhCCceEecCC------CCCCchHHHHHHHHHHHHHhcHHHHHH
Q 020301           71 TEDWGETLFAALSRAGGKAFSNMAVGYNNVDV-NAANKYGIAVGNTP------GVLTETTAELAASLSLAAARRIVEADE  143 (328)
Q Consensus        71 ~~~~~~~~l~~~~~l~~k~i~~~g~G~d~id~-~~~~~~gI~v~n~p------~~~~~~vAE~al~~~L~~~R~~~~~~~  143 (328)
                      ..++++++++++|++  |+|.   +|+|++|+ ++++++||.|+|+|      ++++.+|||++++++|..         
T Consensus        83 ~~~~~~~~l~~~~~l--~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~---------  148 (293)
T 3d4o_A           83 SIVLTEEMIEKTPNH--CVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH---------  148 (293)
T ss_dssp             CCBCCHHHHHTSCTT--CEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             CccchHHHHHhCCCC--CEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHh---------
Confidence            346889999999987  8886   79999998 89999999999998      889999999999998852         


Q ss_pred             HHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcc
Q 020301          144 FMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT  223 (328)
Q Consensus       144 ~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (328)
                                     .+.++.|+|+||||+|.||+.+|+++ ++|||+|++|||+..+.. . ...+       +..   
T Consensus       149 ---------------~~~~l~g~~v~IiG~G~iG~~~a~~l-~~~G~~V~~~dr~~~~~~-~-~~~~-------g~~---  200 (293)
T 3d4o_A          149 ---------------TDFTIHGANVAVLGLGRVGMSVARKF-AALGAKVKVGARESDLLA-R-IAEM-------GME---  200 (293)
T ss_dssp             ---------------CSSCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSHHHHH-H-HHHT-------TSE---
T ss_pred             ---------------cCCCCCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECCHHHHH-H-HHHC-------CCe---
Confidence                           13579999999999999999999996 799999999999875421 1 1111       211   


Q ss_pred             ccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc
Q 020301          224 WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (328)
Q Consensus       224 ~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~  276 (328)
                      .....++++++++||+|++|+|+     ++++++.|+.||+|+++||++||+.
T Consensus       201 ~~~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          201 PFHISKAAQELRDVDVCINTIPA-----LVVTANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             EEEGGGHHHHTTTCSEEEECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred             ecChhhHHHHhcCCCEEEECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence            11125789999999999999995     7899999999999999999999764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.94  E-value=1.4e-26  Score=216.56  Aligned_cols=221  Identities=15%  Similarity=0.097  Sum_probs=159.9

Q ss_pred             CCeEEEEeCCCCc-hHHHHHHHhCCCeEEEecCCCCCC------CHHHHHHHhcCCccEEEec---C-----------CC
Q 020301           14 GKYRVVSTKPMPG-TRWINLLIEQDCRVEICTQKKTIL------SVEDIIALIGDKCDGVIGQ---L-----------TE   72 (328)
Q Consensus        14 ~~~~vlv~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~------~~e~~~~~~~~~~d~li~~---~-----------~~   72 (328)
                      +.|||++...... ..+.+.|.+.++++.+...++...      ..+++.+.+. ++|+++..   .           ..
T Consensus         6 ~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~-~~d~ii~~~~~~~~~~~i~s~~a~~   84 (300)
T 2rir_A            6 TGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQ-QIDSIILPVSATTGEGVVSTVFSNE   84 (300)
T ss_dssp             CSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGG-GCSEEECCSSCEETTTEECBSSCSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHh-cCCEEEeccccccCCcccccccccC
Confidence            4678988765332 245677888899887654332211      1123444454 69999871   1           24


Q ss_pred             C--ccHHHHHHhhccCCceEEEccccCCccC-hhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCC
Q 020301           73 D--WGETLFAALSRAGGKAFSNMAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL  149 (328)
Q Consensus        73 ~--~~~~~l~~~~~l~~k~i~~~g~G~d~id-~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~  149 (328)
                      +  +++++++++|++  |+|+   +|+|++| +++|+++||.|+|+|+++  ++         ++.|++...     +|.
T Consensus        85 ~~~~~~~~l~~~~~l--~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~-----~g~  143 (300)
T 2rir_A           85 EVVLKQDHLDRTPAH--CVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTV-----EGT  143 (300)
T ss_dssp             CEECCHHHHHTSCTT--CEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHH-----HHH
T ss_pred             CccchHHHHhhcCCC--CEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHH-----HHH
Confidence            5  789999999987  8877   8999999 999999999999999974  33         345666443     333


Q ss_pred             CCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC
Q 020301          150 YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (328)
Q Consensus       150 w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (328)
                      |.. . ....+.++.|+|+||||+|.||+.+|+++ ++||++|++|||+.... +. ..       +.+.   ......+
T Consensus       144 ~~~-~-~~~~~~~l~g~~v~IiG~G~iG~~~a~~l-~~~G~~V~~~d~~~~~~-~~-~~-------~~g~---~~~~~~~  208 (300)
T 2rir_A          144 IML-A-IQHTDYTIHGSQVAVLGLGRTGMTIARTF-AALGANVKVGARSSAHL-AR-IT-------EMGL---VPFHTDE  208 (300)
T ss_dssp             HHH-H-HHTCSSCSTTSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HH-HH-------HTTC---EEEEGGG
T ss_pred             HHH-H-HHhcCCCCCCCEEEEEcccHHHHHHHHHH-HHCCCEEEEEECCHHHH-HH-HH-------HCCC---eEEchhh
Confidence            421 0 01235789999999999999999999997 79999999999987532 11 11       1121   1112357


Q ss_pred             HHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc
Q 020301          230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (328)
Q Consensus       230 l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~  276 (328)
                      +++++++||+|++|+|+     ++++++.|+.||+|+++||++||+.
T Consensus       209 l~~~l~~aDvVi~~~p~-----~~i~~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          209 LKEHVKDIDICINTIPS-----MILNQTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             HHHHSTTCSEEEECCSS-----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred             HHHHhhCCCEEEECCCh-----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence            99999999999999996     7899999999999999999999854

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.91  E-value=1.4e-23  Score=202.29  Aligned_cols=251  Identities=16%  Similarity=0.157  Sum_probs=175.0

Q ss_pred             HHHHHHhCCCeEEEecCC--CCCCCHHHHH-----------HHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 020301           29 WINLLIEQDCRVEICTQK--KTILSVEDII-----------ALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (328)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~--~~~~~~e~~~-----------~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~   95 (328)
                      ..+.|.+.|++|.+....  ...++.++..           +.+. ++|+| +...++.++++....+.  ..++.....
T Consensus        22 ~v~~L~~~G~~V~ve~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~-~adii-~~vk~p~~~e~~~l~~~--~~l~~~~~~   97 (377)
T 2vhw_A           22 GVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWA-DADLL-LKVKEPIAAEYGRLRHG--QILFTFLHL   97 (377)
T ss_dssp             HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEESCHHHHHH-HCSEE-ECSSCCCGGGGGGCCTT--CEEEECCCG
T ss_pred             HHHHHHhCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCHHHHhc-cCCEE-EEeCCCChHHHhhcCCC--CEEEEEecc
Confidence            457787788888653322  1345666655           2222 47866 44455666655443443  256666677


Q ss_pred             cCCccChhHHHhCCceEe----------cCCCCCCchHHHHHHHHHHHHH-hcHHHHHHHHHcCCCCCCCCCcccccccC
Q 020301           96 GYNNVDVNAANKYGIAVG----------NTPGVLTETTAELAASLSLAAA-RRIVEADEFMRAGLYDGWLPNLFVGNLLK  164 (328)
Q Consensus        96 G~d~id~~~~~~~gI~v~----------n~p~~~~~~vAE~al~~~L~~~-R~~~~~~~~~~~g~w~~w~~~~~~~~~l~  164 (328)
                      ++|.-.++++.++||.+.          |.|.++  ++||++..+++.+. |++.    ..+.|+|..|..    ..++.
T Consensus        98 ~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s--~~ae~ag~~a~~~a~r~l~----~~~~g~~~~~~~----~~~l~  167 (377)
T 2vhw_A           98 AASRACTDALLDSGTTSIAYETVQTADGALPLLA--PMSEVAGRLAAQVGAYHLM----RTQGGRGVLMGG----VPGVE  167 (377)
T ss_dssp             GGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTH--HHHHHHHHHHHHHHHHHTS----GGGTSCCCCTTC----BTTBC
T ss_pred             cCCHHHHHHHHHcCCeEEEeeeccccCCCccccC--chHHHHHHHHHHHHHHHHH----HhcCCCcccccC----CCCCC
Confidence            888888999999999997          566654  56799985555554 6662    344555432221    13799


Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCC-ccccccCCHHHHhhcCCEEEEc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      |++++|+|+|.||+.+|+.+ +++|++|+++|+++... +...+.+       +... .......+++++++++|+|+.+
T Consensus       168 g~~V~ViG~G~iG~~~a~~a-~~~Ga~V~~~d~~~~~l-~~~~~~~-------g~~~~~~~~~~~~l~~~l~~aDvVi~~  238 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIA-NGMGATVTVLDINIDKL-RQLDAEF-------CGRIHTRYSSAYELEGAVKRADLVIGA  238 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHT-------TTSSEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHHHhc-------CCeeEeccCCHHHHHHHHcCCCEEEEC
Confidence            99999999999999999996 79999999999987542 1111111       1110 0001123678899999999996


Q ss_pred             C--CCChhhhccccHHHHhcCCCCcEEEEcC--CCcccCHHHHHHHHHcCCccEEEEeCCCC-CCCC-CCCcccCCCeE-
Q 020301          244 P--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVIDEVALVEHLKQNPMFRVGLDVFED-EPYM-KPGLSEMKNAI-  316 (328)
Q Consensus       244 ~--plt~~t~~li~~~~~~~mk~ga~lIN~a--RG~~vde~aL~~aL~~g~i~gaalDV~~~-EP~~-~~~L~~~~nvi-  316 (328)
                      +  |.+ +|.++++++.++.||+|+++||++  +|+                      ||+. ||.+ ++|++.++||+ 
T Consensus       239 ~~~p~~-~t~~li~~~~l~~mk~g~~iV~va~~~Gg----------------------v~e~~ep~~~~~~~~~~~~v~i  295 (377)
T 2vhw_A          239 VLVPGA-KAPKLVSNSLVAHMKPGAVLVDIAIDQGG----------------------CFEGSRPTTYDHPTFAVHDTLF  295 (377)
T ss_dssp             CCCTTS-CCCCCBCHHHHTTSCTTCEEEEGGGGTTC----------------------SBTTCCCBCSSSCEEEETTEEE
T ss_pred             CCcCCC-CCcceecHHHHhcCCCCcEEEEEecCCCC----------------------ccccccCCCCCCCEEEECCEEE
Confidence            6  655 789999999999999999999998  332                      7888 8864 56899999999 


Q ss_pred             -EcCCCCCCC
Q 020301          317 -VVPHIASAS  325 (328)
Q Consensus       317 -lTPHia~~t  325 (328)
                       +|||+++.+
T Consensus       296 ~~~phl~~~~  305 (377)
T 2vhw_A          296 YCVANMPASV  305 (377)
T ss_dssp             ECBTTGGGGS
T ss_pred             EecCCcchhh
Confidence             999999976

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.90  E-value=3e-25  Score=219.74  Aligned_cols=200  Identities=16%  Similarity=0.120  Sum_probs=156.6

Q ss_pred             ceE-EEccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCC
Q 020301           88 KAF-SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ  166 (328)
Q Consensus        88 k~i-~~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~  166 (328)
                      +.+ ...|+|+|++  .++.++||.++|++++|. +|||+       ..|++....+.+..+    |..  ..+..+.|+
T Consensus       212 ~GvveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~-------~~r~l~~~~~s~~~g----~~r--~~~~~l~Gk  275 (494)
T 3ce6_A          212 KGVTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKS-------KFDNKYGTRHSLIDG----INR--GTDALIGGK  275 (494)
T ss_dssp             CCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------TTHHHHHHHHHHHHH----HHH--HHCCCCTTC
T ss_pred             EEEEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHH-------HHhhhhhhhhhhhHH----HHh--ccCCCCCcC
Confidence            444 4789999998  678899999999999999 99994       345555444444433    321  123478999


Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl  246 (328)
                      +|+|+|+|.||+.+|+++ ++||++|+++|+++.....         +...|.      ...+++++++++|+|+.|++ 
T Consensus       276 tV~IiG~G~IG~~~A~~l-ka~Ga~Viv~d~~~~~~~~---------A~~~Ga------~~~~l~e~l~~aDvVi~atg-  338 (494)
T 3ce6_A          276 KVLICGYGDVGKGCAEAM-KGQGARVSVTEIDPINALQ---------AMMEGF------DVVTVEEAIGDADIVVTATG-  338 (494)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHH---------HHHTTC------EECCHHHHGGGCSEEEECSS-
T ss_pred             EEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH---------HHHcCC------EEecHHHHHhCCCEEEECCC-
Confidence            999999999999999996 7999999999998754211         111222      13578999999999999974 


Q ss_pred             ChhhhccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH-HHHcCCccEEEEeCCCCCCCCCC--CcccCCCeE----Ec
Q 020301          247 DKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE-HLKQNPMFRVGLDVFEDEPYMKP--GLSEMKNAI----VV  318 (328)
Q Consensus       247 t~~t~~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~-aL~~g~i~gaalDV~~~EP~~~~--~L~~~~nvi----lT  318 (328)
                         +.++++.+.|+.||+|++++|++|++. ||+++|.+ +|++++|. +++|+|+.++. .+  .|+..+|++    +|
T Consensus       339 ---t~~~i~~~~l~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~-~~~l~LL~~grlvnL~~~T  413 (494)
T 3ce6_A          339 ---NKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDT-GRSIIVLSEGRLLNLGNAT  413 (494)
T ss_dssp             ---SSCSBCHHHHHHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTT-CCEEEEEGGGSCHHHHHSC
T ss_pred             ---CHHHHHHHHHHhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCc-chHHHHHhCCCEEeccCCC
Confidence               567899999999999999999999999 99999999 89888887 67899876442 33  367788998    99


Q ss_pred             CCCCCCC
Q 020301          319 PHIASAS  325 (328)
Q Consensus       319 PHia~~t  325 (328)
                      ||+++.+
T Consensus       414 PH~a~~~  420 (494)
T 3ce6_A          414 GHPSFVM  420 (494)
T ss_dssp             CSCHHHH
T ss_pred             CCccccc
Confidence            9997643

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.81  E-value=8.1e-22  Score=191.71  Aligned_cols=131  Identities=22%  Similarity=0.297  Sum_probs=106.2

Q ss_pred             ccc-cCCCEEEEEecCHHHHHHHHHHHhc-CCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301          160 GNL-LKGQTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (328)
Q Consensus       160 ~~~-l~g~tvgIiG~G~IG~~vA~~l~~~-fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (328)
                      |.+ |.|+|+||+|+|+||+.+|+++ ++ |||+|++|++.....       |             .....+++++++.+
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l-~~~~G~kVv~~sD~~g~~-------~-------------~~~gvdl~~L~~~~  264 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIM-SEDFGMKVVAVSDSKGGI-------Y-------------NPDGLNADEVLKWK  264 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEEECSSCEE-------E-------------EEEEECHHHHHHHH
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHH-HHhcCCEEEEEeCCCccc-------c-------------CccCCCHHHHHHHH
Confidence            356 9999999999999999999997 78 999999995332110       0             00113677887766


Q ss_pred             CE-EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCC--CCcccCCC
Q 020301          238 DV-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKN  314 (328)
Q Consensus       238 Di-V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~--~~L~~~~n  314 (328)
                      |. .++ +|+ ++|++ |+.+.|..||+ .+|||+|||.+||+++ +++|+.+.|++++     +||++.  ++|++++|
T Consensus       265 d~~~~l-~~l-~~t~~-i~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~  334 (419)
T 1gtm_A          265 NEHGSV-KDF-PGATN-ITNEELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKG  334 (419)
T ss_dssp             HHHSSS-TTC-TTSEE-ECHHHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTT
T ss_pred             HhcCEe-ecC-ccCee-eCHHHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCC
Confidence            54 333 576 68889 89999999998 5999999999999999 6999999999988     899753  58999999


Q ss_pred             eEEcCCC
Q 020301          315 AIVVPHI  321 (328)
Q Consensus       315 vilTPHi  321 (328)
                      |++|||+
T Consensus       335 V~itPhi  341 (419)
T 1gtm_A          335 ILQIPDF  341 (419)
T ss_dssp             CEEECHH
T ss_pred             EEEECch
Confidence            9999999

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.79  E-value=5.7e-19  Score=171.22  Aligned_cols=156  Identities=19%  Similarity=0.262  Sum_probs=115.0

Q ss_pred             ccccCCccC-hhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEE
Q 020301           93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (328)
Q Consensus        93 ~g~G~d~id-~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIi  171 (328)
                      .++|+..+. +..+.+.+|+|.|.+..    +.++..-........+....  .+.           .+.++.|+|+||+
T Consensus       155 TttGv~rL~~~~~~g~L~iPVinvnds----vtk~~~Dn~~Gt~~slldgi--~ra-----------tg~~L~GktVgIi  217 (436)
T 3h9u_A          155 TTTGVKNLYKRLQRGKLTIPAMNVNDS----VTKSKFDNLYGCRESLVDGI--KRA-----------TDVMIAGKTACVC  217 (436)
T ss_dssp             SHHHHHHHHHHHHHTCCCSCEEECTTS----HHHHTTHHHHHHHHHHHHHH--HHH-----------HCCCCTTCEEEEE
T ss_pred             cCcChHHHHHHHHcCCCCCceEeechh----hhhhhhhccccchHHHHHHH--HHh-----------cCCcccCCEEEEE
Confidence            456665442 33455789999999864    44444433333333222111  111           2367999999999


Q ss_pred             ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhh
Q 020301          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (328)
Q Consensus       172 G~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~  251 (328)
                      |+|.||+.+|+++ ++|||+|++||+++....+..         ..|.      ...++++++++||+|++    ++.|+
T Consensus       218 G~G~IG~~vA~~L-ka~Ga~Viv~D~~p~~a~~A~---------~~G~------~~~sL~eal~~ADVVil----t~gt~  277 (436)
T 3h9u_A          218 GYGDVGKGCAAAL-RGFGARVVVTEVDPINALQAA---------MEGY------QVLLVEDVVEEAHIFVT----TTGND  277 (436)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHH---------HTTC------EECCHHHHTTTCSEEEE----CSSCS
T ss_pred             eeCHHHHHHHHHH-HHCCCEEEEECCChhhhHHHH---------HhCC------eecCHHHHHhhCCEEEE----CCCCc
Confidence            9999999999996 799999999999875432211         1121      23699999999999996    46789


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHH
Q 020301          252 HLINKERLATMKKEAILVNCSRGPV-IDEVALVEH  285 (328)
Q Consensus       252 ~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~a  285 (328)
                      ++|+++.|++||+|++|||+|||++ ||.++|.+.
T Consensus       278 ~iI~~e~l~~MK~gAIVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          278 DIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             CSBCTTTGGGCCTTEEEEECSSSGGGBCHHHHHHH
T ss_pred             CccCHHHHhhcCCCcEEEEeCCCCCccCHHHHHhh
Confidence            9999999999999999999999997 999999874

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.77  E-value=1.5e-18  Score=168.36  Aligned_cols=230  Identities=15%  Similarity=0.168  Sum_probs=152.8

Q ss_pred             HHHHHHhCCCeEEEecCC--CCCCCHHHHHHH---------hcCCccEEEecCCCCccHHHHHHhhccCCceEEEccccC
Q 020301           29 WINLLIEQDCRVEICTQK--KTILSVEDIIAL---------IGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY   97 (328)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~--~~~~~~e~~~~~---------~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~   97 (328)
                      ..+.|.+.|++|.+....  ...++.++..+.         +- .+|+++.. .++ .++.++.++. +.+++...+.|+
T Consensus        29 ~v~~L~~~G~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~~~~~-~adiil~v-k~p-~~~~i~~l~~-~~~li~~~~~~~  104 (401)
T 1x13_A           29 TVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVW-QSEIILKV-NAP-LDDEIALLNP-GTTLVSFIWPAQ  104 (401)
T ss_dssp             HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECGGGGG-SSSEEECS-SCC-CHHHHTTCCT-TCEEEECCCGGG
T ss_pred             HHHHHHHCCCEEEEEECCCcccCCChHHHHHCCCEEeccHHHh-cCCeEEEe-CCC-CHHHHHHhcC-CCcEEEEecCCC
Confidence            457787889888764332  124677777643         32 48887753 333 4666777632 349999999999


Q ss_pred             CccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHH--HHHHHHcCCC--CCCCCCc--ccccccCCCEEEEE
Q 020301           98 NNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVE--ADEFMRAGLY--DGWLPNL--FVGNLLKGQTVGVI  171 (328)
Q Consensus        98 d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~--~~~~~~~g~w--~~w~~~~--~~~~~l~g~tvgIi  171 (328)
                      |++|++++.++||.+.+     .++|+|++.++.|.+++.+..  ....++.+.|  ..|....  ..| ++.|++|+|+
T Consensus       105 d~~~~~al~~~gI~v~~-----~e~v~~~~~a~~l~~l~~~a~~ag~~av~~~~~~~~~~~~~~~~~~g-~l~g~~V~Vi  178 (401)
T 1x13_A          105 NPELMQKLAERNVTVMA-----MDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAAG-KVPPAKVMVI  178 (401)
T ss_dssp             CHHHHHHHHHTTCEEEE-----GGGCCCSGGGGGGCHHHHHHHHHHHHHHHHHHHHCSSCSSCEEETTE-EECCCEEEEE
T ss_pred             CHHHHHHHHHCCCEEEE-----eehhhhhhhhcccchHHHHHHHHHHHHHHHHHHhcccccCCceeecc-CcCCCEEEEE
Confidence            99999999999999964     455566555553322222222  1223333332  2222110  011 5889999999


Q ss_pred             ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcc------------c----cc------cCC
Q 020301          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT------------W----KR------ASS  229 (328)
Q Consensus       172 G~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~----~~------~~~  229 (328)
                      |+|.||+.+++.+ +++|++|+++|+++... +. ...+       |.....            .    ..      ..+
T Consensus       179 GaG~iG~~aa~~a-~~~Ga~V~v~D~~~~~~-~~-~~~l-------Ga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (401)
T 1x13_A          179 GAGVAGLAAIGAA-NSLGAIVRAFDTRPEVK-EQ-VQSM-------GAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMEL  248 (401)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEECSCGGGH-HH-HHHT-------TCEECCC--------CCHHHHHHSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH-HHCCCEEEEEcCCHHHH-HH-HHHc-------CCEEEEecccccccccccchhhccHHHHHHHHHH
Confidence            9999999999996 79999999999987532 11 1111       111000            0    00      014


Q ss_pred             HHHHhhcCCEEEEc--CCCChhhhccccHHHHhcCCCCcEEEEcC--CCcccCH
Q 020301          230 MDEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS--RGPVIDE  279 (328)
Q Consensus       230 l~ell~~aDiV~l~--~plt~~t~~li~~~~~~~mk~ga~lIN~a--RG~~vde  279 (328)
                      ++++++++|+|+.|  +|. ..+.++++++.++.||+|+++||+|  ||+.+++
T Consensus       249 l~e~~~~aDvVI~~~~~pg-~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~  301 (401)
T 1x13_A          249 FAAQAKEVDIIVTTALIPG-KPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY  301 (401)
T ss_dssp             HHHHHHHCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred             HHHHhCCCCEEEECCccCC-CCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence            78889999999999  553 3467899999999999999999999  9988876

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.77  E-value=5.2e-18  Score=162.81  Aligned_cols=255  Identities=15%  Similarity=0.185  Sum_probs=154.3

Q ss_pred             HHHHHHhCCCeEEEecCC--CCCCCHHHHHHH---------hcCCccEEEecCCCCccHHHHHHhhccCCceEEEccccC
Q 020301           29 WINLLIEQDCRVEICTQK--KTILSVEDIIAL---------IGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY   97 (328)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~--~~~~~~e~~~~~---------~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~   97 (328)
                      ..+.|.+.|+++.+....  ...++.++..+.         +- ++|+|+ ...++..++ ++.++. +.+++.....+.
T Consensus        22 ~v~~L~~~g~~v~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il-~vk~p~~~~-~~~l~~-~~~~~~~~~~~~   97 (369)
T 2eez_A           22 GVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVV-KVKEPLPEE-YGFLRE-GLILFTYLHLAA   97 (369)
T ss_dssp             HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEE-CSSCCCGGG-GGGCCT-TCEEEECCCGGG
T ss_pred             HHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEE-EECCCCHHH-HhhcCC-CcEEEEEecccC
Confidence            467788889988664322  135677777641         21 588876 444455444 555532 348888888899


Q ss_pred             CccChhHHHhCCceEe---cCCCC-CC----chHHHHHH--HHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCE
Q 020301           98 NNVDVNAANKYGIAVG---NTPGV-LT----ETTAELAA--SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT  167 (328)
Q Consensus        98 d~id~~~~~~~gI~v~---n~p~~-~~----~~vAE~al--~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~t  167 (328)
                      |..+++++.++||.+.   +.+.. ..    .++++.+-  +.++++ +.+...    ..|+. -|...   ..++.+++
T Consensus        98 ~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~a~-~~l~~~----~~g~~-~~~~~---~~~l~~~~  168 (369)
T 2eez_A           98 DRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQVGA-QFLEKP----KGGRG-VLLGG---VPGVAPAS  168 (369)
T ss_dssp             CHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHHHH-HHTSGG----GTSCC-CCTTC---BTBBCCCE
T ss_pred             CHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHHHH-HHHHHh----cCCCc-eecCC---CCCCCCCE
Confidence            9999999999999997   44442 11    34455443  333322 222211    11210 11111   14699999


Q ss_pred             EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCC-ccccccCCHHHHhhcCCEEEEcCCC
Q 020301          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVISLHPVL  246 (328)
Q Consensus       168 vgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~pl  246 (328)
                      ++|+|.|.||+.+|+.+ +++|++|+++|+++... +...+.+       +..- .......+++++++++|+|+.|++.
T Consensus       169 V~ViGaG~iG~~~a~~l-~~~Ga~V~~~d~~~~~~-~~~~~~~-------g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~  239 (369)
T 2eez_A          169 VVILGGGTVGTNAAKIA-LGMGAQVTILDVNHKRL-QYLDDVF-------GGRVITLTATEANIKKSVQHADLLIGAVLV  239 (369)
T ss_dssp             EEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHT-------TTSEEEEECCHHHHHHHHHHCSEEEECCC-
T ss_pred             EEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHHhc-------CceEEEecCCHHHHHHHHhCCCEEEECCCC
Confidence            99999999999999996 79999999999987532 1111111       1110 0001124677889999999999997


Q ss_pred             Ch-hhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCC-CCCCcccCCCeE--------
Q 020301          247 DK-TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLSEMKNAI--------  316 (328)
Q Consensus       247 t~-~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~-~~~~L~~~~nvi--------  316 (328)
                      +. .+..++.++.++.||+|+++||++-.             .|   |+ +||+  ||. .++|++..+|+.        
T Consensus       240 ~~~~~~~li~~~~l~~mk~gg~iV~v~~~-------------~g---g~-~d~~--ep~~~~~~~~~~~~v~~~~v~~lp  300 (369)
T 2eez_A          240 PGAKAPKLVTRDMLSLMKEGAVIVDVAVD-------------QG---GC-VETI--RPTTHAEPTYVVDGVVHYGVANMP  300 (369)
T ss_dssp             ------CCSCHHHHTTSCTTCEEEECC--------------------------------------CEETTEEEECCSCSG
T ss_pred             CccccchhHHHHHHHhhcCCCEEEEEecC-------------CC---CC-CCcc--cCCCCCCCEEEECCEEEEeeCCcc
Confidence            66 68899999999999999999999821             22   44 9998  664 356888899999        


Q ss_pred             -EcCCCCCC
Q 020301          317 -VVPHIASA  324 (328)
Q Consensus       317 -lTPHia~~  324 (328)
                       .|||+|+.
T Consensus       301 ~~~p~~as~  309 (369)
T 2eez_A          301 GAVPRTSTF  309 (369)
T ss_dssp             GGSHHHHHH
T ss_pred             hhcHHHHHH
Confidence             88998764

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.76  E-value=2.8e-18  Score=166.27  Aligned_cols=155  Identities=16%  Similarity=0.222  Sum_probs=113.2

Q ss_pred             ccccCCccC-hhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEE
Q 020301           93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (328)
Q Consensus        93 ~g~G~d~id-~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIi  171 (328)
                      .++|+-.+- ........+++.|+..    ++..+-+-....+.+.+....  .|.           .+.++.|||+||+
T Consensus       191 TtTGv~rL~~m~~~g~L~~PvinVnd----s~tK~~fDn~yG~~eslvdgI--~Ra-----------tg~~L~GKTVgVI  253 (464)
T 3n58_A          191 TTTGVNRLYQLQKKGLLPFPAINVND----SVTKSKFDNKYGCKESLVDGI--RRG-----------TDVMMAGKVAVVC  253 (464)
T ss_dssp             SHHHHHHHHHHHHHTCCCSCEEECTT----SHHHHTTHHHHHHHHHHHHHH--HHH-----------HCCCCTTCEEEEE
T ss_pred             cccchHHHHHHHHcCCCCCCEEeecc----HhhhhhhhhhhcchHHHHHHH--HHh-----------cCCcccCCEEEEE
Confidence            566665432 2222345678888754    566665555555544443222  111           2468999999999


Q ss_pred             ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhh
Q 020301          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (328)
Q Consensus       172 G~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~  251 (328)
                      |+|.||+.+|+++ ++|||+|+++|+++....+..         ..|     + ...++++++++||||+++.    .|+
T Consensus       254 G~G~IGr~vA~~l-rafGa~Viv~d~dp~~a~~A~---------~~G-----~-~vv~LeElL~~ADIVv~at----gt~  313 (464)
T 3n58_A          254 GYGDVGKGSAQSL-AGAGARVKVTEVDPICALQAA---------MDG-----F-EVVTLDDAASTADIVVTTT----GNK  313 (464)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEECSSHHHHHHHH---------HTT-----C-EECCHHHHGGGCSEEEECC----SSS
T ss_pred             CcCHHHHHHHHHH-HHCCCEEEEEeCCcchhhHHH---------hcC-----c-eeccHHHHHhhCCEEEECC----CCc
Confidence            9999999999996 899999999998765432211         112     1 2368999999999999863    579


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 020301          252 HLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (328)
Q Consensus       252 ~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~  284 (328)
                      ++|+++.|++||+|++|||++||++ ||.++|.+
T Consensus       314 ~lI~~e~l~~MK~GAILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          314 DVITIDHMRKMKDMCIVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             SSBCHHHHHHSCTTEEEEECSSSTTTBTCGGGTT
T ss_pred             cccCHHHHhcCCCCeEEEEcCCCCcccCHHHHHh
Confidence            9999999999999999999999998 99999974

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.74  E-value=3.3e-17  Score=158.03  Aligned_cols=240  Identities=15%  Similarity=0.177  Sum_probs=149.1

Q ss_pred             HHHHHHhCCCeEEEecCCC--CCCCHHHHH-----------HHhcCCccEEEecCCCCc----cHHHHHHhhccCCceEE
Q 020301           29 WINLLIEQDCRVEICTQKK--TILSVEDII-----------ALIGDKCDGVIGQLTEDW----GETLFAALSRAGGKAFS   91 (328)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~--~~~~~e~~~-----------~~~~~~~d~li~~~~~~~----~~~~l~~~~~l~~k~i~   91 (328)
                      ..+.|.+.|++|.+.....  ..++.++..           +.+. ++|+++.. .+++    +++.++.++. +.++++
T Consensus        22 ~v~~L~~~G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~-~adiil~v-~~p~~~~~~~~~i~~l~~-~~~~i~   98 (384)
T 1l7d_A           22 VVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALS-QADVVWKV-QRPMTAEEGTDEVALIKE-GAVLMC   98 (384)
T ss_dssp             HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHS-SCSEEEEE-ECCCCGGGSCCGGGGSCT-TCEEEE
T ss_pred             HHHHHHhCCCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhhc-CCCEEEEe-cCcccccCCHHHHHhhcc-CCEEEE
Confidence            3567777888886643221  245666655           3444 68988754 3454    5677777764 348888


Q ss_pred             EccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCC--CCCCCcccc-cccCCCEE
Q 020301           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD--GWLPNLFVG-NLLKGQTV  168 (328)
Q Consensus        92 ~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~--~w~~~~~~~-~~l~g~tv  168 (328)
                      ....+.|+.+++++.++||.+++. +...+.+++..+. +|+..+.+ ..+..+..+.|.  .|.+....+ .++.|++|
T Consensus        99 ~~~~~~~~~~~~~~~~~gi~~~~~-e~~~~~~~~~~l~-~l~~~a~~-ag~~av~~~~~~~~~~~~~~~~~~~~l~g~~V  175 (384)
T 1l7d_A           99 HLGALTNRPVVEALTKRKITAYAM-ELMPRISRAQSMD-ILSSQSNL-AGYRAVIDGAYEFARAFPMMMTAAGTVPPARV  175 (384)
T ss_dssp             ECCGGGCHHHHHHHHHTTCEEEEG-GGCCCSGGGGGGC-HHHHHHHH-HHHHHHHHHHHHCSSCSSCEEETTEEECCCEE
T ss_pred             EecccCCHHHHHHHHHCCCEEEEe-ccccccccccccc-hhhHHHHH-HHHHHHHHHHHHhhhcccchhccCCCCCCCEE
Confidence            889999999999999999999974 2222222222332 22223322 222333333331  122211112 36899999


Q ss_pred             EEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh---cC----CCCCcccccc----------CCHH
Q 020301          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---AN----GEQPVTWKRA----------SSMD  231 (328)
Q Consensus       169 gIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~----------~~l~  231 (328)
                      +|+|+|.||+.+++.+ +++|++|+++|+++... +. ...++....   ..    +...-++...          ..++
T Consensus       176 ~ViGaG~iG~~aa~~a-~~~Ga~V~~~d~~~~~~-~~-~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~  252 (384)
T 1l7d_A          176 LVFGVGVAGLQAIATA-KRLGAVVMATDVRAATK-EQ-VESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVL  252 (384)
T ss_dssp             EEECCSHHHHHHHHHH-HHTTCEEEEECSCSTTH-HH-HHHTTCEECCC-----------------------CCHHHHHH
T ss_pred             EEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH-HHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHH
Confidence            9999999999999996 79999999999986532 11 111221000   00    0000000000          1178


Q ss_pred             HHhhcCCEEEEcC--CCChhhhccccHHHHhcCCCCcEEEEcC--CCcccC
Q 020301          232 EVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVID  278 (328)
Q Consensus       232 ell~~aDiV~l~~--plt~~t~~li~~~~~~~mk~ga~lIN~a--RG~~vd  278 (328)
                      ++++++|+|+.|+  |.+ .+.++++++.++.||+|+++||++  ||+.++
T Consensus       253 ~~~~~aDvVi~~~~~pg~-~~~~li~~~~l~~mk~g~vivdva~~~gg~~~  302 (384)
T 1l7d_A          253 KELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLAVEAGGNCP  302 (384)
T ss_dssp             HHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETTGGGTCSST
T ss_pred             HHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCCEEEEEecCCCCCee
Confidence            8899999999877  433 356789999999999999999999  887553

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.70  E-value=8.2e-17  Score=155.76  Aligned_cols=154  Identities=18%  Similarity=0.310  Sum_probs=107.4

Q ss_pred             ccccCCccC-hhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEE
Q 020301           93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (328)
Q Consensus        93 ~g~G~d~id-~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIi  171 (328)
                      .++|+-.+- +....+..++|.|....    +..+-+--.......+...  ..+.           .+..+.|++++|+
T Consensus       164 TttGv~rl~~~~~~g~L~~Pvi~vnds----~tK~~fDn~yGt~~s~~~g--i~ra-----------t~~~L~GktV~Vi  226 (435)
T 3gvp_A          164 SVTGVHRLYQLSKAGKLCVPAMNVNDS----VTKQKFDNLYCCRESILDG--LKRT-----------TDMMFGGKQVVVC  226 (435)
T ss_dssp             CHHHHHHHTCC--CCCCCSCEEECTTC----HHHHHHHTHHHHHHHHHHH--HHHH-----------HCCCCTTCEEEEE
T ss_pred             cchhHHHHHHHHHcCCCCCCEEEecch----hhhhhhhhhhhhHHHHHHH--HHHh-----------hCceecCCEEEEE
Confidence            455654432 22233567999988774    3333332222222222111  1111           2357999999999


Q ss_pred             ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhh
Q 020301          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (328)
Q Consensus       172 G~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~  251 (328)
                      |+|.||+.+|+++ ++|||+|+++|+++....+..         ..|     + ...++++++++||+|++|    +.|+
T Consensus       227 G~G~IGk~vA~~L-ra~Ga~Viv~D~dp~ra~~A~---------~~G-----~-~v~~Leeal~~ADIVi~a----tgt~  286 (435)
T 3gvp_A          227 GYGEVGKGCCAAL-KAMGSIVYVTEIDPICALQAC---------MDG-----F-RLVKLNEVIRQVDIVITC----TGNK  286 (435)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHH---------HTT-----C-EECCHHHHTTTCSEEEEC----SSCS
T ss_pred             eeCHHHHHHHHHH-HHCCCEEEEEeCChhhhHHHH---------HcC-----C-EeccHHHHHhcCCEEEEC----CCCc
Confidence            9999999999996 799999999999864322211         112     1 236899999999999995    5789


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHH
Q 020301          252 HLINKERLATMKKEAILVNCSRGPV-IDEVALV  283 (328)
Q Consensus       252 ~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~  283 (328)
                      ++|+++.|++||+|+++||+|||+. +|.++|.
T Consensus       287 ~lI~~e~l~~MK~gailINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          287 NVVTREHLDRMKNSCIVCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             CSBCHHHHHHSCTTEEEEECSSTTTTBTGGGGC
T ss_pred             ccCCHHHHHhcCCCcEEEEecCCCccCCHHHHH
Confidence            9999999999999999999999998 8887774

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.62  E-value=3.1e-17  Score=159.27  Aligned_cols=192  Identities=15%  Similarity=0.237  Sum_probs=139.5

Q ss_pred             ceEEEccccCCccChhHHH-----hCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCC-CCCCCcccc-
Q 020301           88 KAFSNMAVGYNNVDVNAAN-----KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD-GWLPNLFVG-  160 (328)
Q Consensus        88 k~i~~~g~G~d~id~~~~~-----~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~-~w~~~~~~~-  160 (328)
                      +.+...|+|+|++++..+.     ++++.++|.+|. ..+++++.+..++.+.|++....... .+.|. .|....... 
T Consensus        83 ~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~~s~a~~av~~a~~  160 (404)
T 1gpj_A           83 RHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRIS-EGAVSIGSAAVELAER  160 (404)
T ss_dssp             HHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSSTT-CSCCSHHHHHHHHHHH
T ss_pred             hhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhhc-CCCccHHHHHHHHHHH
Confidence            6778889999999998887     889999999998 57899999999999999886543222 23221 110000001 


Q ss_pred             --cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301          161 --NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (328)
Q Consensus       161 --~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (328)
                        .++.|++++|+|+|.||+.+++.+ +.+|+ +|+++||+.... ++....+       |..   .....++++++.++
T Consensus       161 ~~~~l~g~~VlIiGaG~iG~~~a~~l-~~~G~~~V~v~~r~~~ra-~~la~~~-------g~~---~~~~~~l~~~l~~a  228 (404)
T 1gpj_A          161 ELGSLHDKTVLVVGAGEMGKTVAKSL-VDRGVRAVLVANRTYERA-VELARDL-------GGE---AVRFDELVDHLARS  228 (404)
T ss_dssp             HHSCCTTCEEEEESCCHHHHHHHHHH-HHHCCSEEEEECSSHHHH-HHHHHHH-------TCE---ECCGGGHHHHHHTC
T ss_pred             HhccccCCEEEEEChHHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHc-------CCc---eecHHhHHHHhcCC
Confidence              147999999999999999999996 68999 999999987532 1222222       111   11124788889999


Q ss_pred             CEEEEcCCCChhhhccccHHHHhc--CC----CCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCC-CCCCcc
Q 020301          238 DVISLHPVLDKTTYHLINKERLAT--MK----KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLS  310 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~--mk----~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~-~~~~L~  310 (328)
                      |+|+.|+|   .+..+++.+.++.  ||    ++.++||++                             +|. .+++++
T Consensus       229 DvVi~at~---~~~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i~~~l~  276 (404)
T 1gpj_A          229 DVVVSATA---APHPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDVEEGVE  276 (404)
T ss_dssp             SEEEECCS---SSSCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSBCTTGG
T ss_pred             CEEEEccC---CCCceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCCCcccc
Confidence            99999976   4467788888887  43    566777775                             365 367899


Q ss_pred             cCCCeEE--cCCCCCCC
Q 020301          311 EMKNAIV--VPHIASAS  325 (328)
Q Consensus       311 ~~~nvil--TPHia~~t  325 (328)
                      ++|||++  +||+++.+
T Consensus       277 ~l~~v~l~d~d~l~~~~  293 (404)
T 1gpj_A          277 NIEDVEVRTIDDLRVIA  293 (404)
T ss_dssp             GSTTEEEEEHHHHHHHH
T ss_pred             ccCCeEEEeHhhHHHHH
Confidence            9999999  99987643

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.40  E-value=1.2e-12  Score=124.49  Aligned_cols=108  Identities=23%  Similarity=0.304  Sum_probs=88.7

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-cCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV  240 (328)
                      ++.|||++|+|+|+||+.+|+++ ++|||+|+++|++...  .++.+.|       +     . ...+++++++ .||++
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l-~~~GakVvvsD~~~~~--~~~a~~~-------g-----a-~~v~~~ell~~~~DIl  235 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLA-AEAGAQLLVADTDTER--VAHAVAL-------G-----H-TAVALEDVLSTPCDVF  235 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH--HHHHHHT-------T-----C-EECCGGGGGGCCCSEE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEeCCccH--HHHHHhc-------C-----C-EEeChHHhhcCcccee
Confidence            79999999999999999999996 7999999999988643  2222222       1     1 2347788888 99999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      +.|     .|.++|+++.++.|| ..+++|.+||++.+++| .++|+++.+.
T Consensus       236 iP~-----A~~~~I~~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl  280 (355)
T 1c1d_A          236 APC-----AMGGVITTEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL  280 (355)
T ss_dssp             EEC-----SCSCCBCHHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred             cHh-----HHHhhcCHHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence            853     689999999999998 78999999999999888 5899988765

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.39  E-value=3.9e-11  Score=114.85  Aligned_cols=255  Identities=13%  Similarity=0.111  Sum_probs=139.4

Q ss_pred             CCCCCeEEEEeCCCCc--------hHHHHHHHhCCCeEEEecCCC--CCCCHHHHHHHhc-----CCccEEEecCCCCcc
Q 020301           11 NPNGKYRVVSTKPMPG--------TRWINLLIEQDCRVEICTQKK--TILSVEDIIALIG-----DKCDGVIGQLTEDWG   75 (328)
Q Consensus        11 ~~~~~~~vlv~~~~~~--------~~~~~~l~~~~~~~~~~~~~~--~~~~~e~~~~~~~-----~~~d~li~~~~~~~~   75 (328)
                      .|-++|+|-|......        +...+.|.+.|++|.+.....  ..++.++..+.=.     +.+|.|+ ...+ .+
T Consensus        18 ~~~~~m~IgvpkE~~~~E~RValtP~~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~adiIl-kVk~-p~   95 (381)
T 3p2y_A           18 GPGSMTLIGVPRESAEGERRVALVPKVVEKLSARGLEVVVESAAGAGALFSDADYERAGATIGDPWPADVVV-KVNP-PT   95 (381)
T ss_dssp             --CTTCEEEECCCCSTTCCCCSSCHHHHHHHHHTTCEEEECTTTTGGGTCCHHHHHHTTCEESCCTTSSEEE-CSSC-CC
T ss_pred             CCCcceEEEEEecCCCCCceecCCHHHHHHHHhCCCEEEEeCCCCccCCCChHHHHHCCCEEeeeecCCEEE-EeCC-CC
Confidence            4667788866433211        234677878899987654422  4577888765311     2356554 3332 34


Q ss_pred             HHHHHHhhccCCceEEEc-cccCCccChhHHHhCCceEec---CCCCC-CchHHHHHHHHHHHHHhcHHHHHHHHHcCCC
Q 020301           76 ETLFAALSRAGGKAFSNM-AVGYNNVDVNAANKYGIAVGN---TPGVL-TETTAELAASLSLAAARRIVEADEFMRAGLY  150 (328)
Q Consensus        76 ~~~l~~~~~l~~k~i~~~-g~G~d~id~~~~~~~gI~v~n---~p~~~-~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w  150 (328)
                      ++.++.++. | +.+..+ --..|.=-++++.++||...-   .|... +.++  -++.-|=.++-+..-......-+..
T Consensus        96 ~~e~~~l~~-g-~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l--~~l~~~s~iAGy~Av~~aa~~l~~~  171 (381)
T 3p2y_A           96 SDEISQLKP-G-SVLIGFLAPRTQPELASRLRIADVTAFAMESIPRISRAQTM--DALSSQANVAGYKAVLLGASLSTRF  171 (381)
T ss_dssp             HHHHTTSCT-T-CEEEECCCTTTCHHHHHHHHHTTCEEEEGGGCCSSGGGGGG--CHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             hhHHhhccC-C-CEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccccc--eeecchhHHHHHHHHHHHHHHhhhh
Confidence            455555654 2 444433 222232234667788988744   33211 1111  1111111111111111111111111


Q ss_pred             CCCCCCccc-ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhc-----CCCCCc--
Q 020301          151 DGWLPNLFV-GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-----NGEQPV--  222 (328)
Q Consensus       151 ~~w~~~~~~-~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~--  222 (328)
                         .+.... -..+.+++|+|||+|.||..+|+.+ +++|++|++||+++... +. ...++.....     .+....  
T Consensus       172 ---~~~l~~~~~~v~~~kV~ViG~G~iG~~aa~~a-~~lGa~V~v~D~~~~~l-~~-~~~lGa~~~~l~~~~~~~~gya~  245 (381)
T 3p2y_A          172 ---VPMLTTAAGTVKPASALVLGVGVAGLQALATA-KRLGAKTTGYDVRPEVA-EQ-VRSVGAQWLDLGIDAAGEGGYAR  245 (381)
T ss_dssp             ---SSCEECSSCEECCCEEEEESCSHHHHHHHHHH-HHHTCEEEEECSSGGGH-HH-HHHTTCEECCCC-----------
T ss_pred             ---hhhhhcccCCcCCCEEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH-HHHcCCeEEeccccccccccchh
Confidence               111111 1357899999999999999999996 79999999999997532 11 1112110000     000000  


Q ss_pred             ------cccccCCHHHHhhcCCEEEEcC--CCChhhhccccHHHHhcCCCCcEEEEcC--CCcccC
Q 020301          223 ------TWKRASSMDEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVID  278 (328)
Q Consensus       223 ------~~~~~~~l~ell~~aDiV~l~~--plt~~t~~li~~~~~~~mk~ga~lIN~a--RG~~vd  278 (328)
                            ......++++++++||+|+.++  |. ..+..+++++.++.||||+++||+|  +|+.++
T Consensus       246 ~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg-~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e  310 (381)
T 3p2y_A          246 ELSEAERAQQQQALEDAITKFDIVITTALVPG-RPAPRLVTAAAATGMQPGSVVVDLAGETGGNCE  310 (381)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBT
T ss_pred             hhhHHHHhhhHHHHHHHHhcCCEEEECCCCCC-cccceeecHHHHhcCCCCcEEEEEeCCCCCccc
Confidence                  0011236789999999998875  53 3467899999999999999999998  676655

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.34  E-value=1.4e-12  Score=121.88  Aligned_cols=118  Identities=12%  Similarity=0.083  Sum_probs=91.7

Q ss_pred             cccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       159 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      .......++|||||+|.||+.+|+.| ...|.+|.+||+++... +..        ...|     .....+++++++.||
T Consensus        15 ~~~~~~m~~I~iIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~-~~l--------~~~g-----~~~~~~~~~~~~~aD   79 (310)
T 3doj_A           15 VPRGSHMMEVGFLGLGIMGKAMSMNL-LKNGFKVTVWNRTLSKC-DEL--------VEHG-----ASVCESPAEVIKKCK   79 (310)
T ss_dssp             ---CCCSCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSGGGG-HHH--------HHTT-----CEECSSHHHHHHHCS
T ss_pred             CcccccCCEEEEECccHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHH--------HHCC-----CeEcCCHHHHHHhCC
Confidence            34556678999999999999999998 57799999999987542 111        1112     223468999999999


Q ss_pred             EEEEcCCCChhhhccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020301          239 VISLHPVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (328)
Q Consensus       239 iV~l~~plt~~t~~li--~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i  291 (328)
                      +|++|+|....++.++  .+..+..+++|.++||+++......+.+.+.+.+..+
T Consensus        80 vvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~  134 (310)
T 3doj_A           80 YTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGG  134 (310)
T ss_dssp             EEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred             EEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            9999999766777766  2556778999999999999998888999999887543

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.29  E-value=1.9e-11  Score=114.43  Aligned_cols=145  Identities=14%  Similarity=0.044  Sum_probs=90.2

Q ss_pred             HHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCc-hhHHHHHHhhhhhhhhcCCC
Q 020301          142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ-ATRLEKFVTAYGQFLKANGE  219 (328)
Q Consensus       142 ~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~  219 (328)
                      ++..+.+.|.+|.+.... .....++|||||+|.||+.+|+.|+ ..|. +|++||+++ ....+..        ...| 
T Consensus         2 ~~~~~~~~~~~~~~~~~~-~~~~~~~I~iIG~G~mG~~~A~~L~-~~G~~~V~~~dr~~~~~~~~~~--------~~~g-   70 (312)
T 3qsg_A            2 HHHHHHSSGVDLGTENLY-FQSNAMKLGFIGFGEAASAIASGLR-QAGAIDMAAYDAASAESWRPRA--------EELG-   70 (312)
T ss_dssp             ------------------------CEEEEECCSHHHHHHHHHHH-HHSCCEEEEECSSCHHHHHHHH--------HHTT-
T ss_pred             CcccccccccccCccccc-ccCCCCEEEEECccHHHHHHHHHHH-HCCCCeEEEEcCCCCHHHHHHH--------HHCC-
Confidence            345677778666543222 2344679999999999999999984 6688 999999973 2222211        1112 


Q ss_pred             CCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEe--
Q 020301          220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD--  297 (328)
Q Consensus       220 ~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalD--  297 (328)
                          .....++++++++||+|++|+|...... .+ ++....++++.++||++........++.+.+.+..+....+|  
T Consensus        71 ----~~~~~~~~e~~~~aDvVi~~vp~~~~~~-~~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~p  144 (312)
T 3qsg_A           71 ----VSCKASVAEVAGECDVIFSLVTAQAALE-VA-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVA  144 (312)
T ss_dssp             ----CEECSCHHHHHHHCSEEEECSCTTTHHH-HH-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             ----CEEeCCHHHHHhcCCEEEEecCchhHHH-HH-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEecc
Confidence                2234689999999999999999665544 33 667788999999999999999899999999887522223344  


Q ss_pred             CCCCCC
Q 020301          298 VFEDEP  303 (328)
Q Consensus       298 V~~~EP  303 (328)
                      |+-++|
T Consensus       145 v~g~~~  150 (312)
T 3qsg_A          145 VMSAVK  150 (312)
T ss_dssp             ECSCST
T ss_pred             ccCCch
Confidence            454433

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.28  E-value=5.7e-12  Score=117.55  Aligned_cols=116  Identities=15%  Similarity=0.138  Sum_probs=92.9

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .++..++|||||+|.||+.+|+.| ...|.+|++||+++... +..        ...|     .....++++++++||+|
T Consensus         5 ~~~~~~~IgiIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~-~~~--------~~~g-----~~~~~~~~e~~~~aDvV   69 (306)
T 3l6d_A            5 DESFEFDVSVIGLGAMGTIMAQVL-LKQGKRVAIWNRSPGKA-AAL--------VAAG-----AHLCESVKAALSASPAT   69 (306)
T ss_dssp             CCCCSCSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSHHHH-HHH--------HHHT-----CEECSSHHHHHHHSSEE
T ss_pred             cccCCCeEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH--------HHCC-----CeecCCHHHHHhcCCEE
Confidence            356678999999999999999997 57899999999987542 111        1112     22346899999999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i  291 (328)
                      ++|+|....++.++.++.+..+++|.++||++++...+.+.+.+.+++..+
T Consensus        70 i~~vp~~~~~~~v~~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~  120 (306)
T 3l6d_A           70 IFVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGG  120 (306)
T ss_dssp             EECCSSHHHHHHHHTSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTC
T ss_pred             EEEeCCHHHHHHHhcccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            999997777888886445677889999999999999999999999987544

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.26  E-value=5.8e-12  Score=117.43  Aligned_cols=115  Identities=20%  Similarity=0.256  Sum_probs=93.4

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      ++||+||+|.||..+|++|+ .-|.+|.+|||++.+. +.+        ...|     .....++.|+++.||+|++|+|
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~-~~G~~v~v~dr~~~~~-~~l--------~~~G-----a~~a~s~~e~~~~~dvv~~~l~   68 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLL-KAGYLLNVFDLVQSAV-DGL--------VAAG-----ASAARSARDAVQGADVVISMLP   68 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSSHHHH-HHH--------HHTT-----CEECSSHHHHHTTCSEEEECCS
T ss_pred             CEEEEeeehHHHHHHHHHHH-hCCCeEEEEcCCHHHH-HHH--------HHcC-----CEEcCCHHHHHhcCCceeecCC
Confidence            68999999999999999985 6799999999997542 221        1122     2345799999999999999999


Q ss_pred             CChhhhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEe
Q 020301          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (328)
Q Consensus       246 lt~~t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalD  297 (328)
                      ..+..+.++.  ...++.+++|.++||++....-+...+.+.+++..+  ..+|
T Consensus        69 ~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~--~~lD  120 (300)
T 3obb_A           69 ASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGL--AMLD  120 (300)
T ss_dssp             CHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTC--EEEE
T ss_pred             chHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC--EEEe
Confidence            8888888774  347889999999999999999999999999998654  3456

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.24  E-value=1.1e-11  Score=115.47  Aligned_cols=115  Identities=11%  Similarity=0.133  Sum_probs=90.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      ++|||||+|.||..+|++|+ .-|.+|++|||++... ++             ....+.....++.|+++.||+|++|+|
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~-~~G~~V~v~dr~~~~~-~~-------------l~~~G~~~~~s~~e~~~~~dvvi~~l~   70 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILL-EAGYELVVWNRTASKA-EP-------------LTKLGATVVENAIDAITPGGIVFSVLA   70 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HTTCEEEEC--------CT-------------TTTTTCEECSSGGGGCCTTCEEEECCS
T ss_pred             CcEEEEecHHHHHHHHHHHH-HCCCeEEEEeCCHHHH-HH-------------HHHcCCeEeCCHHHHHhcCCceeeecc
Confidence            57999999999999999985 6799999999987542 11             112233445789999999999999999


Q ss_pred             CChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEe
Q 020301          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (328)
Q Consensus       246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalD  297 (328)
                      ..+..+..+....+..+++|.++|+.+....-+.+.+.+.+++..+.  .+|
T Consensus        71 ~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~--~ld  120 (297)
T 4gbj_A           71 DDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAH--YVG  120 (297)
T ss_dssp             SHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred             chhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCc--eec
Confidence            88888888888899999999999999999999999999999986554  455

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.24  E-value=1.2e-11  Score=116.06  Aligned_cols=116  Identities=14%  Similarity=0.106  Sum_probs=92.5

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      ....++|||||+|.||+.+|+.| ...|.+|++||+++... ++.        ...|     .....++++++++||+|+
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~-~~l--------~~~g-----~~~~~~~~e~~~~aDvVi   92 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRL-CEAGYALQVWNRTPARA-ASL--------AALG-----ATIHEQARAAARDADIVV   92 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHH-HHTTCEEEEECSCHHHH-HHH--------HTTT-----CEEESSHHHHHTTCSEEE
T ss_pred             ccCCCEEEEECccHHHHHHHHHH-HhCCCeEEEEcCCHHHH-HHH--------HHCC-----CEeeCCHHHHHhcCCEEE
Confidence            34567999999999999999997 57899999999987542 111        1112     233478999999999999


Q ss_pred             EcCCCChhhhccccH-HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          242 LHPVLDKTTYHLINK-ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       242 l~~plt~~t~~li~~-~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      +|+|....++.++.. ..+..+++|.++||++++...+.+.+.+.+++..+.
T Consensus        93 ~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~  144 (320)
T 4dll_A           93 SMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIA  144 (320)
T ss_dssp             ECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             EECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCE
Confidence            999976777776643 677789999999999999999999999999876543

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.22  E-value=3.1e-11  Score=110.06  Aligned_cols=197  Identities=17%  Similarity=0.120  Sum_probs=125.9

Q ss_pred             HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcC---CccEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhHHH
Q 020301           30 INLLIEQDCRVEICTQKKTILSVEDIIALIGD---KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (328)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~---~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d~id~~~~~  106 (328)
                      -..+++.|.+..+...   ..+++++.+.+..   ...++.+.  .+..++++..++++  +-+++...|+|.++.    
T Consensus        21 ~~~~~~~g~~~~y~~~---~~~~~~l~~~i~~l~~~~~G~~vt--~P~k~~i~~~~~~l--~~~a~~~gavn~i~~----   89 (263)
T 2d5c_A           21 AFALESLGLEGSYEAW---DTPLEALPGRLKEVRRAFRGVNLT--LPLKEAALAHLDWV--SPEAQRIGAVNTVLQ----   89 (263)
T ss_dssp             HHHHHHTTCCEEEEEE---ECCGGGHHHHHHHHHHHCSEEEEC--TTCTTGGGGGCSEE--CHHHHHHTCCCEEEE----
T ss_pred             HHHHHHcCCCCEEEEE---eCCHHHHHHHHHhccccCceEEEc--ccCHHHHHHHHHHH--hHHHHHhCCCCcEEc----
Confidence            3567777877654432   1244555544431   24445544  35666777777765  555667778888865    


Q ss_pred             hCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHh
Q 020301          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (328)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~  186 (328)
                      +.|    +..|+|+..     .+++.++.|          .            +.++.| +++|||.|.+|+.+|+.| .
T Consensus        90 ~~g----~~~g~ntd~-----~g~~~~l~~----------~------------~~~l~~-~v~iiG~G~~g~~~a~~l-~  136 (263)
T 2d5c_A           90 VEG----RLFGFNTDA-----PGFLEALKA----------G------------GIPLKG-PALVLGAGGAGRAVAFAL-R  136 (263)
T ss_dssp             ETT----EEEEECCHH-----HHHHHHHHH----------T------------TCCCCS-CEEEECCSHHHHHHHHHH-H
T ss_pred             cCC----eEEEeCCCH-----HHHHHHHHH----------h------------CCCCCC-eEEEECCcHHHHHHHHHH-H
Confidence            234    223455533     344444432          1            235789 999999999999999997 5


Q ss_pred             cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCCh--hhhccccHHHHhcCCC
Q 020301          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK--TTYHLINKERLATMKK  264 (328)
Q Consensus       187 ~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~--~t~~li~~~~~~~mk~  264 (328)
                      .+|++|.+|||+... .++..+.+       +.     . ..+++++ +++|+|++|+|...  ++...+.   .+.+++
T Consensus       137 ~~g~~v~v~~r~~~~-~~~l~~~~-------~~-----~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~---~~~l~~  198 (263)
T 2d5c_A          137 EAGLEVWVWNRTPQR-ALALAEEF-------GL-----R-AVPLEKA-REARLLVNATRVGLEDPSASPLP---AELFPE  198 (263)
T ss_dssp             HTTCCEEEECSSHHH-HHHHHHHH-------TC-----E-ECCGGGG-GGCSEEEECSSTTTTCTTCCSSC---GGGSCS
T ss_pred             HCCCEEEEEECCHHH-HHHHHHHh-------cc-----c-hhhHhhc-cCCCEEEEccCCCCCCCCCCCCC---HHHcCC
Confidence            789999999998643 22222222       11     1 3577888 99999999999763  3334454   467899


Q ss_pred             CcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301          265 EAILVNCSRGPVIDEVALVEHLKQNP  290 (328)
Q Consensus       265 ga~lIN~aRG~~vde~aL~~aL~~g~  290 (328)
                      |+++++++.+.. +. .|.+++++..
T Consensus       199 g~~viD~~~~p~-~t-~l~~~a~~~g  222 (263)
T 2d5c_A          199 EGAAVDLVYRPL-WT-RFLREAKAKG  222 (263)
T ss_dssp             SSEEEESCCSSS-SC-HHHHHHHHTT
T ss_pred             CCEEEEeecCCc-cc-HHHHHHHHCc
Confidence            999999998743 44 4777777643

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.22  E-value=8.1e-11  Score=107.86  Aligned_cols=142  Identities=17%  Similarity=0.167  Sum_probs=98.9

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-cCCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV~l  242 (328)
                      ++|||||+|.||+.+|+.| ...|.  +|++||+++... +. .       ...|...   ....+++++++ +||+|++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l-~~~g~~~~V~~~d~~~~~~-~~-~-------~~~g~~~---~~~~~~~~~~~~~aDvVil   68 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESI-SK-A-------VDLGIID---EGTTSIAKVEDFSPDFVML   68 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHH-HH-H-------HHTTSCS---EEESCGGGGGGTCCSEEEE
T ss_pred             cEEEEEecCHHHHHHHHHH-HhcCCCcEEEEEeCCHHHH-HH-H-------HHCCCcc---cccCCHHHHhcCCCCEEEE
Confidence            4799999999999999997 56777  999999986532 11 1       1112211   11357888899 9999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCC---C-CCCCcccCCCeEEc
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP---Y-MKPGLSEMKNAIVV  318 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP---~-~~~~L~~~~nvilT  318 (328)
                      |+|. ..+..++. +....+++++++++++++.....+.+.+.+.++.+.+  .-++..|.   . ...+++...+++++
T Consensus        69 avp~-~~~~~v~~-~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~~--~p~~~~~~~gp~~a~~~l~~g~~~~~~  144 (281)
T 2g5c_A           69 SSPV-RTFREIAK-KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGG--HPIAGTEKSGVEYSLDNLYEGKKVILT  144 (281)
T ss_dssp             CSCH-HHHHHHHH-HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECE--EEECCCSCCSGGGCCSSTTTTCEEEEC
T ss_pred             cCCH-HHHHHHHH-HHHhhCCCCcEEEECCCCcHHHHHHHHHhccccceee--ccccCCccCChhhhhhHHhCCCCEEEe
Confidence            9994 35566553 4566799999999999888766778888887641111  12333332   1 12367788889999


Q ss_pred             CCCCCC
Q 020301          319 PHIASA  324 (328)
Q Consensus       319 PHia~~  324 (328)
                      ||.++.
T Consensus       145 ~~~~~~  150 (281)
T 2g5c_A          145 PTKKTD  150 (281)
T ss_dssp             CCSSSC
T ss_pred             cCCCCC
Confidence            997654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.20  E-value=4.7e-11  Score=113.96  Aligned_cols=122  Identities=16%  Similarity=0.278  Sum_probs=95.8

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC---CE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA---DV  239 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a---Di  239 (328)
                      +.+++|||||+|.||+.+|+.| ...|.+|.+||+++... +..        ...+     .....+++++++.+   |+
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L-~~~G~~V~v~dr~~~~~-~~l--------~~~g-----~~~~~s~~e~~~~a~~~Dv   84 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRL-RKGGHECVVYDLNVNAV-QAL--------EREG-----IAGARSIEEFCAKLVKPRV   84 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHH--------HTTT-----CBCCSSHHHHHHHSCSSCE
T ss_pred             hcCCEEEEECchHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHH--------HHCC-----CEEeCCHHHHHhcCCCCCE
Confidence            5678999999999999999998 57899999999987542 111        1112     22346899999999   99


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~  301 (328)
                      |++++|.. .++.++ +..+..+++|.++||++++...+...+.+.+++..+......|+..
T Consensus        85 Vi~~vp~~-~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg  144 (358)
T 4e21_A           85 VWLMVPAA-VVDSML-QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGG  144 (358)
T ss_dssp             EEECSCGG-GHHHHH-HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECG
T ss_pred             EEEeCCHH-HHHHHH-HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence            99999976 777777 5677889999999999999999999999999887665544445443

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.18  E-value=1.2e-10  Score=114.56  Aligned_cols=158  Identities=18%  Similarity=0.251  Sum_probs=103.9

Q ss_pred             ceEEE-ccccCCccC-hhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCC
Q 020301           88 KAFSN-MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG  165 (328)
Q Consensus        88 k~i~~-~g~G~d~id-~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g  165 (328)
                      +-++- .++|+..+. +.......|+|.|.......+.-+...+    ...       .+..+.|.      ..+..+.|
T Consensus       203 ~G~~EeTttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yG----t~~-------sl~dgi~r------~tg~~L~G  265 (488)
T 3ond_A          203 VGVSEETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYG----CRH-------SLPDGLMR------ATDVMIAG  265 (488)
T ss_dssp             CEEEECSHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHH----HHH-------HHHHHHHH------HHCCCCTT
T ss_pred             ceeEecccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhcc----ccH-------HHHHHHHH------HcCCcccC
Confidence            44433 567776552 2222356799999876433322121111    111       11111110      12356899


Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      |+++|+|+|.||+.+|++| +++|++|+++|+++....+.         ...+.      ...+++++++.+|+|+.+  
T Consensus       266 KtVvVtGaGgIG~aiA~~L-aa~GA~Viv~D~~~~~a~~A---------a~~g~------dv~~lee~~~~aDvVi~a--  327 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAAL-KQAGARVIVTEIDPICALQA---------TMEGL------QVLTLEDVVSEADIFVTT--  327 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH---------HHTTC------EECCGGGTTTTCSEEEEC--
T ss_pred             CEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHH---------HHhCC------ccCCHHHHHHhcCEEEeC--
Confidence            9999999999999999997 79999999999986542221         11121      246789999999999965  


Q ss_pred             CChhhhccccHHHHhcCCCCcEEEEcCCCcc-cCHHHH
Q 020301          246 LDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVAL  282 (328)
Q Consensus       246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL  282 (328)
                        ..+.++++.+.|+.||++++++|++|+.. ++.+.+
T Consensus       328 --tG~~~vl~~e~l~~mk~gaiVvNaG~~~~Ei~~~~l  363 (488)
T 3ond_A          328 --TGNKDIIMLDHMKKMKNNAIVCNIGHFDNEIDMLGL  363 (488)
T ss_dssp             --SSCSCSBCHHHHTTSCTTEEEEESSSTTTTBTHHHH
T ss_pred             --CCChhhhhHHHHHhcCCCeEEEEcCCCCcccchHHH
Confidence              45678999999999999999999999832 344444

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.18  E-value=2.6e-11  Score=111.72  Aligned_cols=111  Identities=18%  Similarity=0.110  Sum_probs=89.4

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      ++|||||+|.||+.+|+.| ...|.+|++|||++... +..        .+.+     .....+++++++.||+|++|+|
T Consensus         2 ~~i~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~-~~~--------~~~g-----~~~~~~~~~~~~~aDvvi~~vp   66 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNL-VKAGCSVTIWNRSPEKA-EEL--------AALG-----AERAATPCEVVESCPVTFAMLA   66 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSGGGG-HHH--------HHTT-----CEECSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEEeecHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHH--------HHCC-----CeecCCHHHHHhcCCEEEEEcC
Confidence            5899999999999999998 57899999999987542 111        1112     2345789999999999999999


Q ss_pred             CChhhhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020301          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (328)
Q Consensus       246 lt~~t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i  291 (328)
                      ...+++.++.  ++.+..+++|.++||+++....+.+.+.+.+++..+
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~  114 (287)
T 3pef_A           67 DPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGG  114 (287)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence            7667777662  566788999999999999998888999999987544

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.17  E-value=2.3e-11  Score=112.87  Aligned_cols=111  Identities=22%  Similarity=0.277  Sum_probs=89.7

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      .++|||||+|.||+.+|+.| ...|.+|++||+++... +..        .+.+     .....+++++++ ||+|++|+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~-~~~--------~~~g-----~~~~~~~~~~~~-aDvvi~~v   78 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRM-TEWPGGVTVYDIRIEAM-TPL--------AEAG-----ATLADSVADVAA-ADLIHITV   78 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHH-TTSTTCEEEECSSTTTS-HHH--------HHTT-----CEECSSHHHHTT-SSEEEECC
T ss_pred             CCeEEEECcCHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHH--------HHCC-----CEEcCCHHHHHh-CCEEEEEC
Confidence            35899999999999999997 57899999999987542 111        1112     223468999999 99999999


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      |....++.++ ++.+..+++|.++||+++......+.+.+.+.+..+.
T Consensus        79 p~~~~~~~v~-~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  125 (296)
T 3qha_A           79 LDDAQVREVV-GELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIH  125 (296)
T ss_dssp             SSHHHHHHHH-HHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCE
T ss_pred             CChHHHHHHH-HHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCE
Confidence            9777777777 7778889999999999999998999999999875443

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.16  E-value=1.4e-10  Score=108.60  Aligned_cols=144  Identities=17%  Similarity=0.143  Sum_probs=98.1

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHH-HhhcCC
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREAD  238 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aD  238 (328)
                      .+..++|||||+|.||+.+|+.| +..|.  +|++||+++... +.        +.+.|...   ....++++ ++++||
T Consensus        30 ~~~~~kI~IIG~G~mG~slA~~l-~~~G~~~~V~~~dr~~~~~-~~--------a~~~G~~~---~~~~~~~~~~~~~aD   96 (314)
T 3ggo_A           30 SLSMQNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESI-SK--------AVDLGIID---EGTTSIAKVEDFSPD   96 (314)
T ss_dssp             CCSCSEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHH-HH--------HHHTTSCS---EEESCTTGGGGGCCS
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHH-HhCCCCCEEEEEECCHHHH-HH--------HHHCCCcc---hhcCCHHHHhhccCC
Confidence            34558999999999999999997 57788  999999987542 11        11122211   12357788 899999


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCC---C-CCCCcccCCC
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP---Y-MKPGLSEMKN  314 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP---~-~~~~L~~~~n  314 (328)
                      +|++|+|.. .+..++ ++....+++++++++++.......+++.+.+.. ++.+. -=++-.|-   . ....|+.-..
T Consensus        97 vVilavp~~-~~~~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~~-hPm~G~e~sG~~~A~~~Lf~g~~  172 (314)
T 3ggo_A           97 FVMLSSPVR-TFREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVGG-HPIAGTEKSGVEYSLDNLYEGKK  172 (314)
T ss_dssp             EEEECSCGG-GHHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEECE-EECCCCCCCSGGGCCTTTTTTCE
T ss_pred             EEEEeCCHH-HHHHHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-CEEec-CcccCCcccchhhhhhhhhcCCE
Confidence            999999954 345545 566777999999999987765556677776654 22221 11333331   1 1236788889


Q ss_pred             eEEcCCCC
Q 020301          315 AIVVPHIA  322 (328)
Q Consensus       315 vilTPHia  322 (328)
                      +++||+-+
T Consensus       173 ~il~~~~~  180 (314)
T 3ggo_A          173 VILTPTKK  180 (314)
T ss_dssp             EEECCCTT
T ss_pred             EEEEeCCC
Confidence            99999854

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.14  E-value=1.4e-10  Score=111.89  Aligned_cols=238  Identities=16%  Similarity=0.156  Sum_probs=129.4

Q ss_pred             HHHHHHhCCCeEEEecCC--CCCCCHHHHHHHhc-------C-CccEEEecCCCCccHHHHHHhhccCCceEEEc-cccC
Q 020301           29 WINLLIEQDCRVEICTQK--KTILSVEDIIALIG-------D-KCDGVIGQLTEDWGETLFAALSRAGGKAFSNM-AVGY   97 (328)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~--~~~~~~e~~~~~~~-------~-~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~-g~G~   97 (328)
                      ..+.|.+.|++|.+....  ...++.++..+.=.       + ++|.|+.- ..+ +++.++.++. | +.+..+ --.-
T Consensus        47 ~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~~~~adiIlkV-k~p-~~~e~~~l~~-g-~~l~~~lh~~~  122 (405)
T 4dio_A           47 SVKKLKSLGFDVVVEAGAGLGSRIPDQEYEKAGARVGTAADAKTADVILKV-RRP-SAQEISGYRS-G-AVVIAIMDPYG  122 (405)
T ss_dssp             HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEECGGGGGGCSEEEEE-ECC-CTTTGGGSCT-T-CEEEEECCCTT
T ss_pred             HHHHHHhCCCEEEEeCCCCccCCCCHHHHHHcCCEEchHHhhccCCEEEEe-CCC-ChhHHhhcCC-C-cEEEEEecccc
Confidence            457777789998765543  23567777654211       1 35655531 122 2233344443 2 343332 2222


Q ss_pred             CccChhHHHhCCceEec---CCCCC-CchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccc-cccCCCEEEEEe
Q 020301           98 NNVDVNAANKYGIAVGN---TPGVL-TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG-NLLKGQTVGVIG  172 (328)
Q Consensus        98 d~id~~~~~~~gI~v~n---~p~~~-~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~-~~l~g~tvgIiG  172 (328)
                      |.=-++++.++||...-   .|... +.++-  ++.-|-.++-+..-......-+.   ..+....+ ..+.+.+|+|+|
T Consensus       123 ~~~l~~~l~~~~it~ia~E~i~r~~ra~~l~--~ls~~s~iAGy~Av~~aa~~l~~---~~~~l~t~~g~v~~~kV~ViG  197 (405)
T 4dio_A          123 NEEAISAMAGAGLTTFAMELMPRITRAQSMD--VLSSQANLAGYQAVIDAAYEYDR---ALPMMMTAAGTVPAAKIFVMG  197 (405)
T ss_dssp             CHHHHHHHHHTTCEEEEGGGSCCSGGGGGGC--HHHHHHHHHHHHHHHHHHHHCSS---CSSCEEETTEEECCCEEEEEC
T ss_pred             CHHHHHHHHHCCCeEEEeeccccccccCccc--eecchhHHHHHHHHHHHHHHhHh---hhchhhccCCCcCCCEEEEEC
Confidence            32234667788888743   33221 11111  11111111111111111111111   11111111 257899999999


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhc-------CCCCCcccc----------ccCCHHHHhh
Q 020301          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-------NGEQPVTWK----------RASSMDEVLR  235 (328)
Q Consensus       173 ~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~----------~~~~l~ell~  235 (328)
                      +|.||..+|+.+ +++|++|++||+++... +. .+.++.....       ++....+..          ...+++++++
T Consensus       198 ~G~iG~~aa~~a-~~lGa~V~v~D~~~~~l-~~-~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~  274 (405)
T 4dio_A          198 AGVAGLQAIATA-RRLGAVVSATDVRPAAK-EQ-VASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVAEHIA  274 (405)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSTTHH-HH-HHHTTCEECCCCC-----------------CHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH-HHCCCEEEEEcCCHHHH-HH-HHHcCCceeecccccccccccccchhhhcchhhhhhhHhHHHHHhc
Confidence            999999999996 79999999999987542 11 1112110000       000000000          0136889999


Q ss_pred             cCCEEEEcC--CCChhhhccccHHHHhcCCCCcEEEEcC--CCcccCH
Q 020301          236 EADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVIDE  279 (328)
Q Consensus       236 ~aDiV~l~~--plt~~t~~li~~~~~~~mk~ga~lIN~a--RG~~vde  279 (328)
                      +||+|+.++  |.. .+..+++++.++.||||+++||+|  +|+.++.
T Consensus       275 ~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~  321 (405)
T 4dio_A          275 KQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGGNIEG  321 (405)
T ss_dssp             TCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTT
T ss_pred             CCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCCCccc
Confidence            999998774  532 467899999999999999999998  7877654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.13  E-value=2.6e-10  Score=106.86  Aligned_cols=125  Identities=17%  Similarity=0.079  Sum_probs=90.6

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCch--hHHHHHHhhhhhhhhcCCCCCccccccC-CHHHHhhcCCEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRAS-SMDEVLREADVI  240 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ell~~aDiV  240 (328)
                      .++|||||+|.||..+|+.| ...| .+|++||+++.  ...++..+.    +...|.       .. ++++++++||+|
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L-~~~G~~~V~~~dr~~~~~~~~~~~~~~----~~~~g~-------~~~s~~e~~~~aDvV   91 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGL-GGRNAARLAAYDLRFNDPAASGALRAR----AAELGV-------EPLDDVAGIACADVV   91 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HTTTCSEEEEECGGGGCTTTHHHHHHH----HHHTTC-------EEESSGGGGGGCSEE
T ss_pred             CCeEEEECccHHHHHHHHHH-HHcCCCeEEEEeCCCccccchHHHHHH----HHHCCC-------CCCCHHHHHhcCCEE
Confidence            36899999999999999998 5789 99999999862  111111111    111221       35 788999999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP  303 (328)
                      ++|+|.......+  ++.+..+++|.++||+++......+.+.+.+++..+....--|+.++|
T Consensus        92 i~avp~~~~~~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~  152 (317)
T 4ezb_A           92 LSLVVGAATKAVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVP  152 (317)
T ss_dssp             EECCCGGGHHHHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCST
T ss_pred             EEecCCHHHHHHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCch
Confidence            9999966555543  677788999999999999998899999999987544322222454433

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.13  E-value=2.6e-11  Score=111.75  Aligned_cols=111  Identities=17%  Similarity=0.111  Sum_probs=88.1

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      ++|||||+|.||+.+|+.|+ ..|.+|++|||++.... ..        ...+     .....+++++++.||+|++|+|
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~-~~G~~V~~~dr~~~~~~-~~--------~~~g-----~~~~~~~~~~~~~advvi~~v~   66 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLV-RAGFDVTVWNRNPAKCA-PL--------VALG-----ARQASSPAEVCAACDITIAMLA   66 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHH-HHTCCEEEECSSGGGGH-HH--------HHHT-----CEECSCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEccCHHHHHHHHHHH-HCCCeEEEEcCCHHHHH-HH--------HHCC-----CeecCCHHHHHHcCCEEEEEcC
Confidence            47999999999999999984 67999999999875421 11        1112     2234689999999999999999


Q ss_pred             CChhhhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020301          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (328)
Q Consensus       246 lt~~t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i  291 (328)
                      ..+.++.++.  +..+..+++|.++||++++.....+.+.+.+.+..+
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~  114 (287)
T 3pdu_A           67 DPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGG  114 (287)
T ss_dssp             SHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            7667777662  556778999999999999999888999999887543

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.13  E-value=4.8e-10  Score=103.23  Aligned_cols=145  Identities=14%  Similarity=0.064  Sum_probs=99.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh----hhhhhhcC-CCCC-------ccccccCCHHHH
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----YGQFLKAN-GEQP-------VTWKRASSMDEV  233 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~----~~~~~~~~-~~~~-------~~~~~~~~l~el  233 (328)
                      ++|+|||.|.||+.+|+.+ ...|.+|++||+++.... ...+.    +....... +...       .......+++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~~~-~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~   82 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQT-AFHGFAVTAYDINTDALD-AAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA   82 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHHHH-HHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCeEEEEeCCHHHHH-HHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence            6899999999999999997 478999999999875321 11110    00000000 0000       011234688999


Q ss_pred             hhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCC
Q 020301          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK  313 (328)
Q Consensus       234 l~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~  313 (328)
                      ++.||+|+.++|.+.+.+..+-++....+++++++++.+.+  +..++|.+++... -...++..|.       |.+.++
T Consensus        83 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~-~~~ig~h~~~-------p~~~~~  152 (283)
T 4e12_A           83 VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRG-DKFLALHFAN-------HVWVNN  152 (283)
T ss_dssp             TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCG-GGEEEEEECS-------STTTSC
T ss_pred             hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCC-cceEEEccCC-------CcccCc
Confidence            99999999999988778777777888889999999955443  4667888888643 3456666553       345667


Q ss_pred             CeEEcCCCC
Q 020301          314 NAIVVPHIA  322 (328)
Q Consensus       314 nvilTPHia  322 (328)
                      .+.++||-.
T Consensus       153 lvevv~~~~  161 (283)
T 4e12_A          153 TAEVMGTTK  161 (283)
T ss_dssp             EEEEEECTT
T ss_pred             eEEEEeCCC
Confidence            788888843

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.12  E-value=3.7e-11  Score=111.72  Aligned_cols=112  Identities=19%  Similarity=0.158  Sum_probs=88.2

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc-cCCHHHHhhcCCEEEEc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISLH  243 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDiV~l~  243 (328)
                      .++|||||+|.||+.+|+.| ...|.+|++||+++... +..        ...|.     .. ..+++++++.||+|++|
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~-~~~--------~~~g~-----~~~~~~~~e~~~~aDvvi~~   71 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSC-LRAGLSTWGADLNPQAC-ANL--------LAEGA-----CGAAASAREFAGVVDALVIL   71 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHH--------HHTTC-----SEEESSSTTTTTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHH--------HHcCC-----ccccCCHHHHHhcCCEEEEE
Confidence            46899999999999999998 47799999999987532 111        11122     12 46888999999999999


Q ss_pred             CCCChhhhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020301          244 PVLDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (328)
Q Consensus       244 ~plt~~t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i  291 (328)
                      +|....++.++.  ++.+..+++|.++||+++......+.+.+.+.+..+
T Consensus        72 vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~  121 (303)
T 3g0o_A           72 VVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNL  121 (303)
T ss_dssp             CSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTC
T ss_pred             CCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCC
Confidence            997667777653  556678999999999999998888899999987533

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.11  E-value=2.6e-10  Score=112.72  Aligned_cols=125  Identities=16%  Similarity=0.212  Sum_probs=95.0

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh---cCCEEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVIS  241 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDiV~  241 (328)
                      .++|||||+|.||+.+|+.| ...|.+|.+||+++... ++..        +.+..........+++++++   .+|+|+
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L-~~~G~~V~v~dr~~~~~-~~l~--------~~g~~g~~i~~~~s~~e~v~~l~~aDvVi   73 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNM-NDHGFVVCAFNRTVSKV-DDFL--------ANEAKGTKVVGAQSLKEMVSKLKKPRRII   73 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSTHHH-HHHH--------HTTTTTSSCEECSSHHHHHHTBCSSCEEE
T ss_pred             CCEEEEEChhHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHH--------hcccCCCceeccCCHHHHHhhccCCCEEE
Confidence            35799999999999999998 57799999999987542 2211        11111111222468999887   499999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCC
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~  300 (328)
                      +++|..+.++.++ ++.+..|++|.++||++++...+...+.+.|++..+.....-|..
T Consensus        74 l~Vp~~~~v~~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsG  131 (484)
T 4gwg_A           74 LLVKAGQAVDDFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSG  131 (484)
T ss_dssp             ECSCSSHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             EecCChHHHHHHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccC
Confidence            9999877888877 677888999999999999999999999999988766544444443

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.11  E-value=1.8e-10  Score=106.95  Aligned_cols=119  Identities=13%  Similarity=0.161  Sum_probs=85.5

Q ss_pred             CCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       165 g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .++||||| +|.||+.+|+.| +..|.+|.+||++..                           .++++++++||+|++|
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l-~~~G~~V~~~~~~~~---------------------------~~~~~~~~~aDvVila   72 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYL-RASGYPISILDREDW---------------------------AVAESILANADVVIVS   72 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHH-HTTTCCEEEECTTCG---------------------------GGHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCCHHHHHHHHHH-HhCCCeEEEEECCcc---------------------------cCHHHHhcCCCEEEEe
Confidence            56899999 999999999997 588999999998642                           2466788999999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCC--CCCCcccCCCeEEcCCC
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPHI  321 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~--~~~~L~~~~nvilTPHi  321 (328)
                      +|.. .+..++ ++....++++++++++++...-..+++.+.+  + .     ++....|.  +..+++.-.++++|||-
T Consensus        73 vp~~-~~~~vl-~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~--~-~-----~~v~~hP~~g~~~~~~~g~~~~l~~~~  142 (298)
T 2pv7_A           73 VPIN-LTLETI-ERLKPYLTENMLLADLTSVKREPLAKMLEVH--T-G-----AVLGLHPMFGADIASMAKQVVVRCDGR  142 (298)
T ss_dssp             SCGG-GHHHHH-HHHGGGCCTTSEEEECCSCCHHHHHHHHHHC--S-S-----EEEEEEECSCTTCSCCTTCEEEEEEEE
T ss_pred             CCHH-HHHHHH-HHHHhhcCCCcEEEECCCCCcHHHHHHHHhc--C-C-----CEEeeCCCCCCCchhhcCCeEEEecCC
Confidence            9953 466766 3455678999999999876543344444432  1 1     23333343  22346666689999974

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.11  E-value=6.9e-11  Score=106.68  Aligned_cols=108  Identities=10%  Similarity=0.147  Sum_probs=65.9

Q ss_pred             CCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhH-------------HHHHHhhhhhhhh
Q 020301          149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR-------------LEKFVTAYGQFLK  215 (328)
Q Consensus       149 ~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~-------------~~~~~~~~~~~~~  215 (328)
                      .|..|.+......++.+++|||||+|.||+.+|+.| ...|.+|++|||++...             .+++..       
T Consensus         3 ~~~~~~~~~~~~~~~~~~kIgiIG~G~mG~alA~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-------   74 (245)
T 3dtt_A            3 SDKIHHHHHHENLYFQGMKIAVLGTGTVGRTMAGAL-ADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLP-------   74 (245)
T ss_dssp             ----------------CCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHHTCC-------CCHHHHGG-------
T ss_pred             cccccccccccccccCCCeEEEECCCHHHHHHHHHH-HHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHh-------
Confidence            344444444456789999999999999999999998 57899999999987541             111110       


Q ss_pred             cCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHH-HhcCCCCcEEEEcC
Q 020301          216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER-LATMKKEAILVNCS  272 (328)
Q Consensus       216 ~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~-~~~mk~ga~lIN~a  272 (328)
                      ..+     .....++++++++||+|++++|..... ..+. +. ...+ +|.++|+++
T Consensus        75 ~~~-----~~~~~~~~e~~~~aDvVilavp~~~~~-~~~~-~i~~~~l-~g~ivi~~s  124 (245)
T 3dtt_A           75 EHP-----HVHLAAFADVAAGAELVVNATEGASSI-AALT-AAGAENL-AGKILVDIA  124 (245)
T ss_dssp             GST-----TCEEEEHHHHHHHCSEEEECSCGGGHH-HHHH-HHCHHHH-TTSEEEECC
T ss_pred             hcC-----ceeccCHHHHHhcCCEEEEccCcHHHH-HHHH-Hhhhhhc-CCCEEEECC
Confidence            101     123468899999999999999955433 3332 22 2233 799999999

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.08  E-value=2.8e-10  Score=104.54  Aligned_cols=184  Identities=15%  Similarity=0.156  Sum_probs=112.8

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC----CccEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhHHH
Q 020301           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD----KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (328)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~----~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d~id~~~~~  106 (328)
                      ..+++.|.+..+....   .+++++.+.+..    +++++.+..  |..++++..++++  .-.++...++|.++.    
T Consensus        33 ~~~~~~g~~~~y~~~~---~~~~~l~~~i~~l~~~~~~G~nvti--P~k~~i~~~ld~l--~~~A~~~gavnti~~----  101 (275)
T 2hk9_A           33 ALIRYAGLNAVYLAFE---INPEELKKAFEGFKALKVKGINVTV--PFKEEIIPLLDYV--EDTAKEIGAVNTVKF----  101 (275)
T ss_dssp             HHHHHHTCSEEEEEEE---CCGGGHHHHHHHHHHHTCCEEEECT--TSTTTTGGGCSEE--CHHHHHHTCCCEEEE----
T ss_pred             HHHHHcCCCcEEEEEE---CCHHHHHHHHHHHHhCCCCEEEECc--cCHHHHHHHHHHh--hHHHHHhCCcceEEe----
Confidence            4566667665544332   234555444321    467777764  4445666555544  334444456666643    


Q ss_pred             hCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHh
Q 020301          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (328)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~  186 (328)
                      +.|-    ..|+|+..     .+++.++.|          .            +.++.|++++|||.|.+|+.+|+.| .
T Consensus       102 ~~g~----~~g~nTd~-----~G~~~~l~~----------~------------~~~~~~~~v~iiGaG~~g~aia~~L-~  149 (275)
T 2hk9_A          102 ENGK----AYGYNTDW-----IGFLKSLKS----------L------------IPEVKEKSILVLGAGGASRAVIYAL-V  149 (275)
T ss_dssp             ETTE----EEEECCHH-----HHHHHHHHH----------H------------CTTGGGSEEEEECCSHHHHHHHHHH-H
T ss_pred             eCCE----EEeecCCH-----HHHHHHHHH----------h------------CCCcCCCEEEEECchHHHHHHHHHH-H
Confidence            2342    23445432     244444432          1            1357889999999999999999997 5


Q ss_pred             cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChh--hhccccHHHHhcCCC
Q 020301          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT--TYHLINKERLATMKK  264 (328)
Q Consensus       187 ~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~--t~~li~~~~~~~mk~  264 (328)
                      ..|++|.+|||+.... ++..+.+       +     .....+++++++++|+|++++|....  +...++   ++.+++
T Consensus       150 ~~g~~V~v~~r~~~~~-~~l~~~~-------g-----~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i~---~~~l~~  213 (275)
T 2hk9_A          150 KEGAKVFLWNRTKEKA-IKLAQKF-------P-----LEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFN---YDLIKK  213 (275)
T ss_dssp             HHTCEEEEECSSHHHH-HHHTTTS-------C-----EEECSCGGGTGGGCSEEEECSSTTSSTTCCCSSC---GGGCCT
T ss_pred             HcCCEEEEEECCHHHH-HHHHHHc-------C-----CeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCCC---HHHcCC
Confidence            7788999999986432 2111111       1     11223788899999999999997642  223453   456899


Q ss_pred             CcEEEEcCC
Q 020301          265 EAILVNCSR  273 (328)
Q Consensus       265 ga~lIN~aR  273 (328)
                      |+++++++.
T Consensus       214 g~~viDv~~  222 (275)
T 2hk9_A          214 DHVVVDIIY  222 (275)
T ss_dssp             TSEEEESSS
T ss_pred             CCEEEEcCC
Confidence            999999988

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.05  E-value=1e-09  Score=100.86  Aligned_cols=144  Identities=19%  Similarity=0.167  Sum_probs=96.2

Q ss_pred             CCEEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      -++|||||+|.||+.+|+.|++ ++|.+|++||+++... +..        ...+...   ....++++++++||+|+++
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~-~~~--------~~~g~~~---~~~~~~~~~~~~aDvVila   73 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSR-DIA--------LERGIVD---EATADFKVFAALADVIILA   73 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHH-HHH--------HHTTSCS---EEESCTTTTGGGCSEEEEC
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHH-HHH--------HHcCCcc---cccCCHHHhhcCCCEEEEc
Confidence            3689999999999999998753 3478999999986532 111        1112110   1235777888999999999


Q ss_pred             CCCChhhhccccHHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEe---CCCC---CCCC-CCCcccCCCe
Q 020301          244 PVLDKTTYHLINKERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD---VFED---EPYM-KPGLSEMKNA  315 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~-mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalD---V~~~---EP~~-~~~L~~~~nv  315 (328)
                      +|. .....++ ++.... ++++.++++++++.....+.+.+.+.+..+.  .++   ++-.   .|.. ...++.-+++
T Consensus        74 vp~-~~~~~v~-~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~--~v~~~P~~g~~~~g~~~a~~~l~~g~~~  149 (290)
T 3b1f_A           74 VPI-KKTIDFI-KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQ--FVGSHPMAGSHKSGAVAANVNLFENAYY  149 (290)
T ss_dssp             SCH-HHHHHHH-HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCE--EEEEEEC-----CCTTSCCTTTTTTSEE
T ss_pred             CCH-HHHHHHH-HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCE--EEEeCCcCCCCcchHHHhhHHHhCCCeE
Confidence            994 3345555 345566 8999999999988776668888888752122  123   2221   2321 2367777889


Q ss_pred             EEcCCCCCC
Q 020301          316 IVVPHIASA  324 (328)
Q Consensus       316 ilTPHia~~  324 (328)
                      +++||.++.
T Consensus       150 ~~~~~~~~~  158 (290)
T 3b1f_A          150 IFSPSCLTK  158 (290)
T ss_dssp             EEEECTTCC
T ss_pred             EEecCCCCC
Confidence            999997654

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.99  E-value=1.4e-09  Score=103.87  Aligned_cols=108  Identities=17%  Similarity=0.245  Sum_probs=83.3

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-cCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV  240 (328)
                      +|.|+|++|+|+|+||+.+|+.| ..+|++|+++|++... .+++.+.|       +.      ...+.++++. +||++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L-~~~GakVvv~D~~~~~-l~~~a~~~-------ga------~~v~~~~ll~~~~DIv  234 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKL-NTEGAKLVVTDVNKAA-VSAAVAEE-------GA------DAVAPNAIYGVTCDIF  234 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH-HHHHHHHH-------CC------EECCGGGTTTCCCSEE
T ss_pred             CCCcCEEEEECchHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHc-------CC------EEEChHHHhccCCcEe
Confidence            69999999999999999999997 6999999999987642 23333222       11      1246667776 89999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i  291 (328)
                      +.|.     +.++|+.+.++.|+ ..+++|.+++++.+++ ..+.|+++.+
T Consensus       235 ip~a-----~~~~I~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi  278 (364)
T 1leh_A          235 APCA-----LGAVLNDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGI  278 (364)
T ss_dssp             EECS-----CSCCBSTTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTC
T ss_pred             eccc-----hHHHhCHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCC
Confidence            8773     67799998999995 6799999999998866 4566666555

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=98.98  E-value=6.3e-10  Score=102.70  Aligned_cols=109  Identities=17%  Similarity=0.212  Sum_probs=85.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      ++|||||+|.||+.+|+.| ...|.+|.+||+++... +..        ...+     .....+++++++.+|+|++++|
T Consensus         5 ~~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~-~~~--------~~~g-----~~~~~~~~~~~~~~D~vi~~vp   69 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINL-LKEGVTVYAFDLMEANV-AAV--------VAQG-----AQACENNQKVAAASDIIFTSLP   69 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHH-HHTTCEEEEECSSHHHH-HHH--------HTTT-----CEECSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEECccHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHH--------HHCC-----CeecCCHHHHHhCCCEEEEECC
Confidence            5899999999999999997 46799999999986532 111        1112     2234688999999999999999


Q ss_pred             CChhhhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       246 lt~~t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      ....++.++.  ++....+++|.++|+++.|...+.+.|.+.+.+.
T Consensus        70 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~  115 (301)
T 3cky_A           70 NAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEK  115 (301)
T ss_dssp             SHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            7777777774  3566778999999999998876788899988763

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=98.98  E-value=6.9e-10  Score=102.33  Aligned_cols=109  Identities=18%  Similarity=0.202  Sum_probs=85.5

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      .+++|||+|.||+.+|+.| ...|.+|.+||+++... +..        ...+     .....+++++++.+|+|++|+|
T Consensus         6 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~-~~~--------~~~g-----~~~~~~~~~~~~~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVSDRNPEAI-ADV--------IAAG-----AETASTAKAIAEQCDVIITMLP   70 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHH-HHH--------HHTT-----CEECSSHHHHHHHCSEEEECCS
T ss_pred             ceEEEECchHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHH--------HHCC-----CeecCCHHHHHhCCCEEEEECC
Confidence            4799999999999999997 46799999999986532 111        1112     2234688999999999999999


Q ss_pred             CChhhhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       246 lt~~t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      ....++.++.  ++....+++|.++||++.|...+.+.|.+.+.+.
T Consensus        71 ~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  116 (299)
T 1vpd_A           71 NSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAK  116 (299)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            7667777663  3556778999999999999877788999998764

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=98.97  E-value=4.3e-10  Score=106.55  Aligned_cols=138  Identities=13%  Similarity=0.091  Sum_probs=87.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc----CCEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE----ADVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~----aDiV~  241 (328)
                      ++|||||+|.||+++|+.| +..|.+|++||+++.... .        +...|.     ....++++++++    ||+|+
T Consensus         9 ~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~~-~--------a~~~G~-----~~~~~~~e~~~~a~~~aDlVi   73 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDL-HAANHSVFGYNRSRSGAK-S--------AVDEGF-----DVSADLEATLQRAAAEDALIV   73 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHH-HHTTCCEEEECSCHHHHH-H--------HHHTTC-----CEESCHHHHHHHHHHTTCEEE
T ss_pred             CEEEEEeecHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-H--------HHHcCC-----eeeCCHHHHHHhcccCCCEEE
Confidence            5799999999999999997 678999999999875321 1        112232     123678888765    69999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCC-CC---CCCCcccCCCeEE
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE-PY---MKPGLSEMKNAIV  317 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~E-P~---~~~~L~~~~nvil  317 (328)
                      +|+|. ..+..++ + .+..++++++++|++.-..--.+++.+.+...+..+. -=++-.| ..   ....|+.-.++++
T Consensus        74 lavP~-~~~~~vl-~-~l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~~~~~v~~-HPmaG~e~sG~~aa~~~Lf~g~~~il  149 (341)
T 3ktd_A           74 LAVPM-TAIDSLL-D-AVHTHAPNNGFTDVVSVKTAVYDAVKARNMQHRYVGS-HPMAGTANSGWSASMDGLFKRAVWVV  149 (341)
T ss_dssp             ECSCH-HHHHHHH-H-HHHHHCTTCCEEECCSCSHHHHHHHHHTTCGGGEECE-EECCSCC-CCGGGCCSSTTTTCEEEE
T ss_pred             EeCCH-HHHHHHH-H-HHHccCCCCEEEEcCCCChHHHHHHHHhCCCCcEecC-CccccccccchhhhhhHHhcCCeEEE
Confidence            99994 4666666 2 3444699999999976543222333333321111110 1122222 11   1235888788999


Q ss_pred             cCCCC
Q 020301          318 VPHIA  322 (328)
Q Consensus       318 TPHia  322 (328)
                      ||+-.
T Consensus       150 tp~~~  154 (341)
T 3ktd_A          150 TFDQL  154 (341)
T ss_dssp             CCGGG
T ss_pred             EeCCC
Confidence            99843

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=98.96  E-value=1.7e-09  Score=107.03  Aligned_cols=118  Identities=14%  Similarity=0.158  Sum_probs=89.7

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc---CC
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---AD  238 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aD  238 (328)
                      -+..++|||||+|.||+.+|+.|+ ..|.+|.+|||++... ++..+.+      .+   .+.....+++++++.   ||
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~La-~~G~~V~v~~r~~~~~-~~l~~~~------~~---~gi~~~~s~~e~v~~l~~aD   80 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNIE-SRGYTVSIFNRSREKT-EEVIAEN------PG---KKLVPYYTVKEFVESLETPR   80 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHHH-TTTCCEEEECSSHHHH-HHHHHHS------TT---SCEEECSSHHHHHHTBCSSC
T ss_pred             ccCCCeEEEEccHHHHHHHHHHHH-hCCCeEEEEeCCHHHH-HHHHhhC------CC---CCeEEeCCHHHHHhCCCCCC
Confidence            456678999999999999999984 7799999999987542 2221111      00   122234689999887   99


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i  291 (328)
                      +|++++|....++.++ ++....+++|.++||++.|...+...+.+.|.+..+
T Consensus        81 vVil~Vp~~~~v~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~  132 (480)
T 2zyd_A           81 RILLMVKAGAGTDAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF  132 (480)
T ss_dssp             EEEECSCSSSHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCHHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCC
Confidence            9999999877888888 466778999999999999988888889999987433

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=98.94  E-value=8.4e-10  Score=101.62  Aligned_cols=107  Identities=23%  Similarity=0.311  Sum_probs=81.6

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl  246 (328)
                      +|||||+|.||+.+|+.| ...|.+|++||+++... +..        ...+     .....+++++++.+|+|++|+|.
T Consensus         2 ~i~iiG~G~mG~~~a~~l-~~~g~~V~~~~~~~~~~-~~~--------~~~g-----~~~~~~~~~~~~~~Dvvi~~vp~   66 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNL-MKHGYPLIIYDVFPDAC-KEF--------QDAG-----EQVVSSPADVAEKADRIITMLPT   66 (296)
T ss_dssp             CEEEECCSTTHHHHHHHH-HHTTCCEEEECSSTHHH-HHH--------HTTT-----CEECSSHHHHHHHCSEEEECCSS
T ss_pred             eEEEEeccHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH--------HHcC-----CeecCCHHHHHhcCCEEEEeCCC
Confidence            699999999999999997 47799999999986532 111        1112     22346889999999999999997


Q ss_pred             ChhhhccccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          247 DKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       247 t~~t~~li~~--~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      ...++.++..  ..+..+++|.++|+++....-+.+.+.+.+.+
T Consensus        67 ~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~  110 (296)
T 2gf2_A           67 SINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEK  110 (296)
T ss_dssp             HHHHHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence            7777776643  25567899999999887776666777777765

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=98.91  E-value=7.5e-10  Score=101.83  Aligned_cols=107  Identities=16%  Similarity=0.136  Sum_probs=83.2

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      ++|||||+|.||+.+|+.| ...|.+|.+|| ++... +..        ...+     .....+++++++++|+|++|+|
T Consensus         4 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~-~~~~~-~~~--------~~~g-----~~~~~~~~~~~~~~D~vi~~vp   67 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINL-ARAGHQLHVTT-IGPVA-DEL--------LSLG-----AVNVETARQVTEFADIIFIMVP   67 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHH-HHTTCEEEECC-SSCCC-HHH--------HTTT-----CBCCSSHHHHHHTCSEEEECCS
T ss_pred             CEEEEEccCHHHHHHHHHH-HhCCCEEEEEc-CHHHH-HHH--------HHcC-----CcccCCHHHHHhcCCEEEEECC
Confidence            4899999999999999997 46799999999 65431 111        1112     1234688999999999999999


Q ss_pred             CChhhhccccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          246 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       246 lt~~t~~li~~--~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      ...+++.++..  +....+++|.++|+++.|...+.+.|.+.+.+
T Consensus        68 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~  112 (295)
T 1yb4_A           68 DTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNE  112 (295)
T ss_dssp             SHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence            76667776642  45567899999999999987888899999986

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.89  E-value=2.6e-09  Score=99.49  Aligned_cols=109  Identities=15%  Similarity=0.167  Sum_probs=83.8

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      ++|||||+|.||+.+|+.| ...|.+|.+||+++... +..        ...+     .....+++++++++|+|++++|
T Consensus        31 ~~I~iIG~G~mG~~~a~~l-~~~g~~V~~~~~~~~~~-~~~--------~~~g-----~~~~~~~~~~~~~~DvVi~av~   95 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNL-LKMGHTVTVWNRTAEKC-DLF--------IQEG-----ARLGRTPAEVVSTCDITFACVS   95 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHH-HHTTCCEEEECSSGGGG-HHH--------HHTT-----CEECSCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHH--------HHcC-----CEEcCCHHHHHhcCCEEEEeCC
Confidence            6799999999999999997 46799999999986532 111        1112     1224578899999999999999


Q ss_pred             CChhhhccccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          246 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       246 lt~~t~~li~~--~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      ....++.++..  ..+..++++.++|+++.+.....+.|.+.+...
T Consensus        96 ~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  141 (316)
T 2uyy_A           96 DPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSR  141 (316)
T ss_dssp             SHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            76677766643  245778999999999998777778888888653

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.88  E-value=2e-09  Score=98.61  Aligned_cols=106  Identities=17%  Similarity=0.207  Sum_probs=81.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      ++|||||+|.||+.+|+.| .. |.+|.+||+++... +...        ..|.     .... ++++++.+|+|++|+|
T Consensus         2 ~~i~iiG~G~~G~~~a~~l-~~-g~~V~~~~~~~~~~-~~~~--------~~g~-----~~~~-~~~~~~~~D~vi~~v~   64 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHL-AR-RFPTLVWNRTFEKA-LRHQ--------EEFG-----SEAV-PLERVAEARVIFTCLP   64 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHH-HT-TSCEEEECSSTHHH-HHHH--------HHHC-----CEEC-CGGGGGGCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHH-hC-CCeEEEEeCCHHHH-HHHH--------HCCC-----cccC-HHHHHhCCCEEEEeCC
Confidence            4699999999999999997 46 99999999986532 1111        1111     1123 6788899999999999


Q ss_pred             CChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      ....+..++ ++....+++|.++|+++.+...+.+.|.+.+.+.
T Consensus        65 ~~~~~~~v~-~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  107 (289)
T 2cvz_A           65 TTREVYEVA-EALYPYLREGTYWVDATSGEPEASRRLAERLREK  107 (289)
T ss_dssp             SHHHHHHHH-HHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            665577666 5566778999999999998888888999998874

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=98.88  E-value=2.5e-09  Score=101.13  Aligned_cols=136  Identities=20%  Similarity=0.192  Sum_probs=92.2

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ..+.+++|||||+|.||+.+|+.| +..|++|++||++.....+.        +...|.     .. .++++++++||+|
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L-~~~G~~V~~~~~~~~~~~~~--------a~~~G~-----~~-~~~~e~~~~aDvV   76 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNL-KDSGVDVTVGLRSGSATVAK--------AEAHGL-----KV-ADVKTAVAAADVV   76 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHH-HHTTCCEEEECCTTCHHHHH--------HHHTTC-----EE-ECHHHHHHTCSEE
T ss_pred             chhcCCEEEEECchHHHHHHHHHH-HHCcCEEEEEECChHHHHHH--------HHHCCC-----EE-ccHHHHHhcCCEE
Confidence            468899999999999999999997 57899999999986432211        111222     12 2888999999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc-EEEEeCCCCCCCCC-C---Cccc---C
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF-RVGLDVFEDEPYMK-P---GLSE---M  312 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~-gaalDV~~~EP~~~-~---~L~~---~  312 (328)
                      ++|+|.. ....++.++....|++|+++++++ |  +..  ..+     .+. ..++||+...|... +   .++.   -
T Consensus        77 ilavp~~-~~~~v~~~~i~~~l~~~~ivi~~~-g--v~~--~~~-----~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g  145 (338)
T 1np3_A           77 MILTPDE-FQGRLYKEEIEPNLKKGATLAFAH-G--FSI--HYN-----QVVPRADLDVIMIAPKAPGHTVRSEFVKGGG  145 (338)
T ss_dssp             EECSCHH-HHHHHHHHHTGGGCCTTCEEEESC-C--HHH--HTT-----SSCCCTTCEEEEEEESSCSHHHHHHHHTTCC
T ss_pred             EEeCCcH-HHHHHHHHHHHhhCCCCCEEEEcC-C--chh--HHH-----hhcCCCCcEEEeccCCCCchhHHHHHhccCC
Confidence            9999943 345666546667899999999873 3  222  111     122 33456666666422 2   2444   5


Q ss_pred             CCeEEcCCCC
Q 020301          313 KNAIVVPHIA  322 (328)
Q Consensus       313 ~nvilTPHia  322 (328)
                      .++++|||..
T Consensus       146 ~~~ii~~~~~  155 (338)
T 1np3_A          146 IPDLIAIYQD  155 (338)
T ss_dssp             CCEEEEEEEC
T ss_pred             CeEEEEecCC
Confidence            6788999864

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.38  E-value=2.3e-10  Score=100.47  Aligned_cols=93  Identities=19%  Similarity=0.222  Sum_probs=71.9

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      +.++++||||+|.||+.+|+.| ...|.+|++|||+..  .+..        ...+     .. ..++++++++||+|++
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L-~~~G~~V~~~~r~~~--~~~~--------~~~g-----~~-~~~~~~~~~~aDvVil   79 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKM-LQCGYSVVFGSRNPQ--VSSL--------LPRG-----AE-VLCYSEAASRSDVIVL   79 (201)
Confidence            6788999999999999999997 578999999998764  1111        0111     11 2377888999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~  276 (328)
                      ++|.. +++.++   .+..+++++++||+++|-.
T Consensus        80 av~~~-~~~~v~---~l~~~~~~~ivI~~~~G~~  109 (201)
T 2yjz_A           80 AVHRE-HYDFLA---ELADSLKGRVLIDVSNNQK  109 (201)
Confidence            99964 677766   2566788999999999975

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=98.86  E-value=4.4e-09  Score=104.45  Aligned_cols=116  Identities=16%  Similarity=0.228  Sum_probs=88.7

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc---CCEEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVIS  241 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~  241 (328)
                      ..+|||||+|.||+.+|+.|+ ..|.+|.+|||++... ++..+.      ..+  ..+.....+++++++.   ||+|+
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La-~~G~~V~v~dr~~~~~-~~l~~~------~~~--~~gi~~~~s~~e~v~~l~~aDvVi   79 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAA-DHGFTVCAYNRTQSKV-DHFLAN------EAK--GKSIIGATSIEDFISKLKRPRKVM   79 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSSHHH-HHHHHT------TTT--TSSEECCSSHHHHHHTSCSSCEEE
T ss_pred             CCCEEEEeeHHHHHHHHHHHH-HCCCEEEEEeCCHHHH-HHHHcc------ccc--CCCeEEeCCHHHHHhcCCCCCEEE
Confidence            457999999999999999985 6799999999987542 221110      000  0122334689998887   99999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i  291 (328)
                      +++|....++.++ ++....+++|.++|+++.+...+...+.+.+.+..+
T Consensus        80 l~Vp~~~~v~~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~  128 (497)
T 2p4q_A           80 LLVKAGAPVDALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGI  128 (497)
T ss_dssp             ECCCSSHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred             EEcCChHHHHHHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCC
Confidence            9999777888877 567778999999999999988888889998877433

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.83  E-value=3e-08  Score=97.28  Aligned_cols=166  Identities=18%  Similarity=0.145  Sum_probs=103.9

Q ss_pred             CCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCC------CCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcC
Q 020301          115 TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG------WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (328)
Q Consensus       115 ~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~------w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~f  188 (328)
                      ..|-|-..|.|.+.+++|...|.         .++|.-      |...    ..-.=++|||||.|.||..+|..++ ..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~a~~~---------~~~w~~p~~~~~~~~~----~~~~i~kVaVIGaG~MG~~IA~~la-~a   76 (460)
T 3k6j_A           11 STGENLYFQGSEVRSYLMEAHSL---------AGQWSLPNDRGDHTNS----EAYDVNSVAIIGGGTMGKAMAICFG-LA   76 (460)
T ss_dssp             TTSGGGGGCBCHHHHHHHHTTCC---------TTSCBCSTTSCBTTSC----CCCCCCEEEEECCSHHHHHHHHHHH-HT
T ss_pred             ccccchhhhhHHHHHHHHhHHHh---------hccccCCCCccccccC----CcccCCEEEEECCCHHHHHHHHHHH-HC
Confidence            34556667778888888863322         234531      2110    1122368999999999999999985 66


Q ss_pred             CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCC--------ccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHh
Q 020301          189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--------VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (328)
Q Consensus       189 g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~  260 (328)
                      |.+|++||+++........+.+. .+.+.|...        .......+++ .+++||+|+.++|.+.+.+.-+-++..+
T Consensus        77 G~~V~l~D~~~e~a~~~i~~~l~-~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~  154 (460)
T 3k6j_A           77 GIETFLVVRNEQRCKQELEVMYA-REKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLEN  154 (460)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHH-HHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEECcHHHHHHHHHHHHH-HHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHh
Confidence            99999999997632111111111 111122110        0111235675 6899999999999877776555567778


Q ss_pred             cCCCCcEEE-EcCCCcccCHHHHHHHHHcCCccEEEEeCCC
Q 020301          261 TMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (328)
Q Consensus       261 ~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gaalDV~~  300 (328)
                      .++++++|+ |+|.   +....+.+++.. .-...++..|.
T Consensus       155 ~~~~~aIlasnTSs---l~i~~ia~~~~~-p~r~iG~Hffn  191 (460)
T 3k6j_A          155 ICKSTCIFGTNTSS---LDLNEISSVLRD-PSNLVGIHFFN  191 (460)
T ss_dssp             TSCTTCEEEECCSS---SCHHHHHTTSSS-GGGEEEEECCS
T ss_pred             hCCCCCEEEecCCC---hhHHHHHHhccC-CcceEEEEecc
Confidence            899999996 5554   445667766653 34567788777

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=98.83  E-value=7e-09  Score=102.41  Aligned_cols=115  Identities=16%  Similarity=0.153  Sum_probs=87.5

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc---CCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l  242 (328)
                      ++|||||+|.||+.+|+.|+ ..|.+|.+|||++... ++..+.+       +  ..+.....+++++++.   +|+|++
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~-~~G~~V~v~dr~~~~~-~~l~~~~-------~--~~gi~~~~s~~e~v~~l~~aDvVil   74 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVE-SRGYTVAIYNRTTSKT-EEVFKEH-------Q--DKNLVFTKTLEEFVGSLEKPRRIML   74 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSHHHH-HHHHHHT-------T--TSCEEECSSHHHHHHTBCSSCEEEE
T ss_pred             CcEEEEeeHHHHHHHHHHHH-hCCCEEEEEcCCHHHH-HHHHHhC-------c--CCCeEEeCCHHHHHhhccCCCEEEE
Confidence            57999999999999999984 6799999999986532 2221111       0  0112234689999886   999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      ++|....+..++ ++....+++|.++|+++.|...+...+.+.+.+..+.
T Consensus        75 avp~~~~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~  123 (474)
T 2iz1_A           75 MVQAGAATDATI-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGIN  123 (474)
T ss_dssp             CCCTTHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCE
T ss_pred             EccCchHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCe
Confidence            999777788777 4566788999999999999877888899888764443

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.81  E-value=2.2e-08  Score=82.53  Aligned_cols=105  Identities=14%  Similarity=0.223  Sum_probs=76.1

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      |++++|||.|.||+.+++.| ..+|++|.++|+++... +++.+.+       +   .......+++++++++|+|++++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l-~~~g~~v~v~~r~~~~~-~~~a~~~-------~---~~~~~~~~~~~~~~~~Divi~at   88 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYF-SYPQYKVTVAGRNIDHV-RAFAEKY-------E---YEYVLINDIDSLIKNNDVIITAT   88 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGC-CTTTCEEEEEESCHHHH-HHHHHHH-------T---CEEEECSCHHHHHHTCSEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCHHHH-HHHHHHh-------C---CceEeecCHHHHhcCCCEEEEeC
Confidence            88999999999999999997 57899999999987542 2222222       1   11123468899999999999999


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCCCcc-------cCHHHHHHHHH
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV-------IDEVALVEHLK  287 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-------vde~aL~~aL~  287 (328)
                      |.+   ..++..   +.+++|.+++|++...-       ++.++|.+.++
T Consensus        89 ~~~---~~~~~~---~~l~~g~~vid~~~p~~~~~~~~~~~~d~l~~~~~  132 (144)
T 3oj0_A           89 SSK---TPIVEE---RSLMPGKLFIDLGNPPNIERGNNVITLDEIYEISK  132 (144)
T ss_dssp             CCS---SCSBCG---GGCCTTCEEEECCSSCSBCCSTTSEEHHHHHHHHH
T ss_pred             CCC---CcEeeH---HHcCCCCEEEEccCCccCCCCCEEEeHHHHHHHHH
Confidence            865   344554   45688999999987543       34556665544

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.81  E-value=2.5e-09  Score=104.74  Aligned_cols=103  Identities=19%  Similarity=0.193  Sum_probs=72.3

Q ss_pred             ccccCC-CEEEEEecCHHHHHHHHHHHhcC------CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHH
Q 020301          160 GNLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (328)
Q Consensus       160 ~~~l~g-~tvgIiG~G~IG~~vA~~l~~~f------g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  232 (328)
                      ...|.| ++|||||+|.||.++|+.|. ..      |++|++.++......+.        +...|.... .....++++
T Consensus        48 ~~~L~GiKkIgIIGlGsMG~AmA~nLr-~s~~~~g~G~~ViVg~r~~sks~e~--------A~e~G~~v~-d~ta~s~aE  117 (525)
T 3fr7_A           48 PEAFKGIKQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKIGLRKGSKSFDE--------ARAAGFTEE-SGTLGDIWE  117 (525)
T ss_dssp             HHHTTTCSEEEEECCTTHHHHHHHHHH-HHHHHTTCCCEEEEEECTTCSCHHH--------HHHTTCCTT-TTCEEEHHH
T ss_pred             hHHhcCCCEEEEEeEhHHHHHHHHHHH-hcccccCCCCEEEEEeCCchhhHHH--------HHHCCCEEe-cCCCCCHHH
Confidence            367999 99999999999999999974 44      99988665543221111        112232210 001247899


Q ss_pred             HhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       233 ll~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      ++++||+|++++|..... .++. +.+..||+|++ |-.+-|-
T Consensus       118 Aa~~ADVVILaVP~~~~~-eVl~-eI~p~LK~GaI-Ls~AaGf  157 (525)
T 3fr7_A          118 TVSGSDLVLLLISDAAQA-DNYE-KIFSHMKPNSI-LGLSHGF  157 (525)
T ss_dssp             HHHHCSEEEECSCHHHHH-HHHH-HHHHHSCTTCE-EEESSSH
T ss_pred             HHhcCCEEEECCChHHHH-HHHH-HHHHhcCCCCe-EEEeCCC
Confidence            999999999999965553 4665 68899999998 5666773

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.80  E-value=2.9e-08  Score=90.51  Aligned_cols=137  Identities=15%  Similarity=0.081  Sum_probs=89.5

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl  246 (328)
                      +++|||+|.||+.+|+.| ...|.+|++||+++... +..        ...+...   ....+++++ ++||+|++++| 
T Consensus         2 ~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~-~~~--------~~~g~~~---~~~~~~~~~-~~~D~vi~av~-   66 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDL-RRRGHYLIGVSRQQSTC-EKA--------VERQLVD---EAGQDLSLL-QTAKIIFLCTP-   66 (279)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHH--------HHTTSCS---EEESCGGGG-TTCSEEEECSC-
T ss_pred             EEEEEcCcHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHH--------HhCCCCc---cccCCHHHh-CCCCEEEEECC-
Confidence            799999999999999997 57789999999986532 111        1112211   123578888 99999999999 


Q ss_pred             ChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCC---CCC-CCCcccCCCeEEcCCCC
Q 020301          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE---PYM-KPGLSEMKNAIVVPHIA  322 (328)
Q Consensus       247 t~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~E---P~~-~~~L~~~~nvilTPHia  322 (328)
                      ...+..++ ++....+++++++||++.......+.+.+.+.  ++.+. .-++..+   |.. ...++.-+.++++|+-+
T Consensus        67 ~~~~~~~~-~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~~-~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~  142 (279)
T 2f1k_A           67 IQLILPTL-EKLIPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIGG-HPMAGTAAQGIDGAEENLFVNAPYVLTPTEY  142 (279)
T ss_dssp             HHHHHHHH-HHHGGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEEE-EECCCCSCSSGGGCCTTTTTTCEEEEEECTT
T ss_pred             HHHHHHHH-HHHHhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEeec-CcccCCccCCHHHHhHHHhCCCcEEEecCCC
Confidence            34555655 45566789999999997766555555555543  23222 1233212   211 12456666788888754

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=98.79  E-value=8.2e-09  Score=102.10  Aligned_cols=116  Identities=15%  Similarity=0.234  Sum_probs=86.8

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh---cCCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDiV~l  242 (328)
                      .+|||||+|.||+.+|+.|+ ..|.+|.+|||++... ++..+.     +..+   .+.....+++++++   .+|+|++
T Consensus         3 m~IgvIG~G~mG~~lA~~La-~~G~~V~v~dr~~~~~-~~l~~~-----~~~g---~gi~~~~~~~e~v~~l~~aDvVil   72 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMN-DHGFVVCAFNRTVSKV-DDFLAN-----EAKG---TKVLGAHSLEEMVSKLKKPRRIIL   72 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSTHHH-HHHHHT-----TTTT---SSCEECSSHHHHHHHBCSSCEEEE
T ss_pred             CeEEEEChHHHHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHhc-----cccC---CCeEEeCCHHHHHhhccCCCEEEE
Confidence            46999999999999999984 6799999999986542 221110     0001   11223468889875   8999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      ++|....++.++ ++....+++|.++|+++.|...+...+.+.+.+..+.
T Consensus        73 aVp~~~~v~~vl-~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~  121 (482)
T 2pgd_A           73 LVKAGQAVDNFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL  121 (482)
T ss_dssp             CSCTTHHHHHHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             eCCChHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            999777788877 4566789999999999999887888888888774443

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=98.78  E-value=1.3e-08  Score=92.08  Aligned_cols=102  Identities=12%  Similarity=0.089  Sum_probs=75.6

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh-HHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      +|||||+|.||+.+|+.|+ ..|.+|++||+...+ ..+..        ...|.     .  .++++++++||+|++|+|
T Consensus         2 ~I~iIG~G~mG~~la~~l~-~~g~~V~~~~~~~~~~~~~~~--------~~~g~-----~--~~~~~~~~~aDvvi~~v~   65 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLR-SRGVEVVTSLEGRSPSTIERA--------RTVGV-----T--ETSEEDVYSCPVVISAVT   65 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHH-HTTCEEEECCTTCCHHHHHHH--------HHHTC-----E--ECCHHHHHTSSEEEECSC
T ss_pred             eEEEEechHHHHHHHHHHH-HCCCeEEEeCCccCHHHHHHH--------HHCCC-----c--CCHHHHHhcCCEEEEECC
Confidence            7999999999999999984 679999999883211 11111        11121     1  467889999999999999


Q ss_pred             CChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      .....+.+  .+.+..+++  ++||++.+...+.+.|.+.+.+
T Consensus        66 ~~~~~~~~--~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~  104 (264)
T 1i36_A           66 PGVALGAA--RRAGRHVRG--IYVDINNISPETVRMASSLIEK  104 (264)
T ss_dssp             GGGHHHHH--HHHHTTCCS--EEEECSCCCHHHHHHHHHHCSS
T ss_pred             CHHHHHHH--HHHHHhcCc--EEEEccCCCHHHHHHHHHHHhh
Confidence            65555554  456677876  9999998877777888888865

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=98.77  E-value=2.9e-08  Score=98.08  Aligned_cols=118  Identities=17%  Similarity=0.186  Sum_probs=87.2

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc---CCEEEEc
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH  243 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~  243 (328)
                      +|||||+|.||+.+|+.|+ ..|.+|.+|||++... ++..+.++..     ..........+++++++.   +|+|+++
T Consensus         3 kIgVIG~G~mG~~lA~~La-~~G~~V~v~dr~~~~~-~~l~~~~g~~-----~~~~~i~~~~~~~e~v~~l~~aDvVila   75 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIA-EKGFKVAVFNRTYSKS-EEFMKANASA-----PFAGNLKAFETMEAFAASLKKPRKALIL   75 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHH-HTTCCEEEECSSHHHH-HHHHHHTTTS-----TTGGGEEECSCHHHHHHHBCSSCEEEEC
T ss_pred             EEEEEChHHHHHHHHHHHH-HCCCEEEEEeCCHHHH-HHHHHhcCCC-----CCCCCeEEECCHHHHHhcccCCCEEEEe
Confidence            6999999999999999984 6799999999986532 2221111100     001112334689998875   9999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      +|....++.++ ++....+++|.++|+++.|...+.+.+.+.+.+..+.
T Consensus        76 Vp~~~~v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~  123 (478)
T 1pgj_A           76 VQAGAATDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR  123 (478)
T ss_dssp             CCCSHHHHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCE
T ss_pred             cCChHHHHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCe
Confidence            99777788777 5666778999999999999877888899999875443

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.77  E-value=2e-08  Score=93.16  Aligned_cols=136  Identities=19%  Similarity=0.186  Sum_probs=87.6

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      --+.|+|||||+|.||..+|+.+ . .|.+|++||+++... ++..+.+    .+.  ...+.....++++ +++||+|+
T Consensus         9 ~~~~~~V~vIG~G~MG~~iA~~l-a-aG~~V~v~d~~~~~~-~~~~~~l----~~~--~~~~i~~~~~~~~-~~~aDlVi   78 (293)
T 1zej_A            9 HHHHMKVFVIGAGLMGRGIAIAI-A-SKHEVVLQDVSEKAL-EAAREQI----PEE--LLSKIEFTTTLEK-VKDCDIVM   78 (293)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHH-H-TTSEEEEECSCHHHH-HHHHHHS----CGG--GGGGEEEESSCTT-GGGCSEEE
T ss_pred             ccCCCeEEEEeeCHHHHHHHHHH-H-cCCEEEEEECCHHHH-HHHHHHH----HHH--HhCCeEEeCCHHH-HcCCCEEE
Confidence            34678999999999999999997 5 799999999987542 2211110    000  0001222356776 89999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCC
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH  320 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPH  320 (328)
                      .++|...+.+..+-.+ ++.+ ++++++ |+|.-   ....+.++++ ..-...++-.|.  |.+     .++-+.++|+
T Consensus        79 eavpe~~~vk~~l~~~-l~~~-~~~IlasntSti---~~~~~a~~~~-~~~r~~G~Hf~~--Pv~-----~~~lveiv~g  145 (293)
T 1zej_A           79 EAVFEDLNTKVEVLRE-VERL-TNAPLCSNTSVI---SVDDIAERLD-SPSRFLGVHWMN--PPH-----VMPLVEIVIS  145 (293)
T ss_dssp             ECCCSCHHHHHHHHHH-HHTT-CCSCEEECCSSS---CHHHHHTTSS-CGGGEEEEEECS--STT-----TCCEEEEEEC
T ss_pred             EcCcCCHHHHHHHHHH-HhcC-CCCEEEEECCCc---CHHHHHHHhh-cccceEeEEecC--ccc-----cCCEEEEECC
Confidence            9999888877665443 6777 999985 88774   4455655553 233466777676  432     2345555554

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.75  E-value=2.6e-08  Score=98.11  Aligned_cols=147  Identities=14%  Similarity=0.225  Sum_probs=93.3

Q ss_pred             CEEEEEecCHHHHHHHHHHHhc-CCcEEEEEcCCchhHHHHHHhh----h----hhhhhcCCCCCccccccCCHHHHhhc
Q 020301          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTA----Y----GQFLKANGEQPVTWKRASSMDEVLRE  236 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~-fg~~V~~~d~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~l~ell~~  236 (328)
                      ++|+|||+|.||..+|..|++. .|.+|++||+++... +.....    |    .+.....  ...+.....++++.++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~-~~l~~g~~~i~e~~l~~~~~~~--~~~~~~~t~~~~e~~~~   82 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRI-NAWNSPTLPIYEPGLKEVVESC--RGKNLFFSTNIDDAIKE   82 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHH-HHHTSSSCSSCCTTHHHHHHHH--BTTTEEEESCHHHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHH-HHHhCCCCCcCCCCHHHHHHHh--hcCCEEEECCHHHHHhc
Confidence            4899999999999999998532 289999999986532 111000    0    0000000  00112223678889999


Q ss_pred             CCEEEEcCCCChhhhccc-------------cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEe---CCC
Q 020301          237 ADVISLHPVLDKTTYHLI-------------NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD---VFE  300 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li-------------~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalD---V~~  300 (328)
                      ||+|++|+|...+..+.+             -+.....|++|+++||.|+..+-..+.+.+.|++....  .+|   ++.
T Consensus        83 aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~--~~d~~V~~~  160 (467)
T 2q3e_A           83 ADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKP--NLNLQVLSN  160 (467)
T ss_dssp             CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCT--TCEEEEEEC
T ss_pred             CCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCC--CCCeEEEeC
Confidence            999999999544333221             13455678999999999998887788899999875322  233   355


Q ss_pred             CCCCCCC----CcccCCCeEE
Q 020301          301 DEPYMKP----GLSEMKNAIV  317 (328)
Q Consensus       301 ~EP~~~~----~L~~~~nvil  317 (328)
                      +|+..+.    .+...+++++
T Consensus       161 Pe~~~~G~~~~d~~~~~rivv  181 (467)
T 2q3e_A          161 PEFLAEGTAIKDLKNPDRVLI  181 (467)
T ss_dssp             CCCCCTTSHHHHHHSCSCEEE
T ss_pred             HHHhhcccchhhccCCCEEEE
Confidence            6655332    2456666754

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.71  E-value=2e-08  Score=91.12  Aligned_cols=102  Identities=13%  Similarity=0.188  Sum_probs=74.1

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      +++.+.++||||+|.||+.+|+.++ ..|.+ |.+||+++... +...+.+       +     .....+++++++++|+
T Consensus         6 ~~~~~m~i~iiG~G~mG~~~a~~l~-~~g~~~v~~~~~~~~~~-~~~~~~~-------g-----~~~~~~~~~~~~~~Dv   71 (266)
T 3d1l_A            6 RSIEDTPIVLIGAGNLATNLAKALY-RKGFRIVQVYSRTEESA-RELAQKV-------E-----AEYTTDLAEVNPYAKL   71 (266)
T ss_dssp             -CGGGCCEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSHHHH-HHHHHHT-------T-----CEEESCGGGSCSCCSE
T ss_pred             cCCCCCeEEEEcCCHHHHHHHHHHH-HCCCeEEEEEeCCHHHH-HHHHHHc-------C-----CceeCCHHHHhcCCCE
Confidence            4566778999999999999999974 56888 89999986532 2211111       1     1223578888999999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vd  278 (328)
                      |++++|.. ....++ ++....+++++++|+++.|...+
T Consensus        72 vi~av~~~-~~~~v~-~~l~~~~~~~~ivv~~s~~~~~~  108 (266)
T 3d1l_A           72 YIVSLKDS-AFAELL-QGIVEGKREEALMVHTAGSIPMN  108 (266)
T ss_dssp             EEECCCHH-HHHHHH-HHHHTTCCTTCEEEECCTTSCGG
T ss_pred             EEEecCHH-HHHHHH-HHHHhhcCCCcEEEECCCCCchH
Confidence            99999944 445544 45556788999999999987654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.68  E-value=2.7e-07  Score=87.83  Aligned_cols=225  Identities=16%  Similarity=0.181  Sum_probs=124.9

Q ss_pred             HHHHHHhCCCeEEEecCCC--CCCCHHHHHHHh---c------CCccEEEecCCCCccHHHHHHhhccCCceEEEccccC
Q 020301           29 WINLLIEQDCRVEICTQKK--TILSVEDIIALI---G------DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY   97 (328)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~--~~~~~e~~~~~~---~------~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~   97 (328)
                      ..+.|.+.|++|.+.....  ..++.++..+.=   .      +++|.|+. ...+...+. . +.+.|...+.-.....
T Consensus        22 ~v~~l~~~g~~v~ve~~ag~~~~f~d~~y~~aga~i~~~~~~~~~ad~i~~-vksP~~~~~-~-~~~~g~~~~~y~~~~~   98 (361)
T 1pjc_A           22 SVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAWSREMVVK-VKEPLPAEY-D-LMQKDQLLFTYLHLAA   98 (361)
T ss_dssp             HHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHHTSSEEEC-SSCCCGGGG-G-GCCTTCEEEECCCGGG
T ss_pred             HHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEECCHHHHhcCCeEEE-ECCCCHHHH-H-hhcCCCEEEEEecccc
Confidence            3567777888876644322  345666554310   0      14777653 333433332 1 2222323333333344


Q ss_pred             CccChhHHHhCCceEec---CCCCC-----CchHHHHHH--HHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCE
Q 020301           98 NNVDVNAANKYGIAVGN---TPGVL-----TETTAELAA--SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT  167 (328)
Q Consensus        98 d~id~~~~~~~gI~v~n---~p~~~-----~~~vAE~al--~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~t  167 (328)
                      +.-.++++.+.|+...|   .|.-.     -.++++.+=  +.+++. .++..    ...|.  +..-.. . ..+.+++
T Consensus        99 ~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA-~nt~~----~~~g~--G~~l~~-l-~~l~~~~  169 (361)
T 1pjc_A           99 ARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGA-RFLER----QQGGR--GVLLGG-V-PGVKPGK  169 (361)
T ss_dssp             CHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHH-HHTSG----GGTSC--CCCTTC-B-TTBCCCE
T ss_pred             CHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHH-HHHhh----ccCCC--ceeccC-C-CCCCCCE
Confidence            44345667788887764   34321     133444433  334433 22211    01121  111000 1 2478899


Q ss_pred             EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCC
Q 020301          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  247 (328)
Q Consensus       168 vgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt  247 (328)
                      +.|+|.|.+|+.+++.+ +.+|++|+++|+++... +...+.++..     . ........++.+.+..+|+|+.+++..
T Consensus       170 VlViGaGgvG~~aa~~a-~~~Ga~V~v~dr~~~r~-~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~DvVI~~~~~~  241 (361)
T 1pjc_A          170 VVILGGGVVGTEAAKMA-VGLGAQVQIFDINVERL-SYLETLFGSR-----V-ELLYSNSAEIETAVAEADLLIGAVLVP  241 (361)
T ss_dssp             EEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHHGGG-----S-EEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred             EEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHHHhhCce-----e-EeeeCCHHHHHHHHcCCCEEEECCCcC
Confidence            99999999999999996 79999999999986532 1111111000     0 000001125667788999999998753


Q ss_pred             h-hhhccccHHHHhcCCCCcEEEEcCC
Q 020301          248 K-TTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       248 ~-~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      . .+..++.++.++.||+|++++|++-
T Consensus       242 ~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          242 GRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             TSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             CCCCCeecCHHHHhhCCCCCEEEEEec
Confidence            3 2456678899999999999999973

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.66  E-value=9.6e-08  Score=89.19  Aligned_cols=96  Identities=19%  Similarity=0.221  Sum_probs=71.2

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      .++++||||+|.||+.+++.+++.+|. +|.+|||++... +++.+.+       +.   ......++++++++||+|++
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~-~~l~~~~-------~~---~~~~~~~~~e~v~~aDiVi~  202 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENA-EKFADTV-------QG---EVRVCSSVQEAVAGADVIIT  202 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHH-HHHHHHS-------SS---CCEECSSHHHHHTTCSEEEE
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHH-HHHHHHh-------hC---CeEEeCCHHHHHhcCCEEEE
Confidence            467899999999999999987655687 899999987542 2222211       10   11234689999999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~  276 (328)
                      ++|.   +..++..   +.+++|.++++++....
T Consensus       203 atp~---~~~v~~~---~~l~~g~~vi~~g~~~p  230 (312)
T 2i99_A          203 VTLA---TEPILFG---EWVKPGAHINAVGASRP  230 (312)
T ss_dssp             CCCC---SSCCBCG---GGSCTTCEEEECCCCST
T ss_pred             EeCC---CCcccCH---HHcCCCcEEEeCCCCCC
Confidence            9984   3566655   57899999999976554

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.65  E-value=3.3e-08  Score=86.96  Aligned_cols=80  Identities=15%  Similarity=0.228  Sum_probs=61.8

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .++.+++++|||+|.||+.+|+.| ...|.+|++||+++.                                .+++||+|
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l-~~~g~~V~~~~~~~~--------------------------------~~~~aD~v   61 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNF-EIAGHEVTYYGSKDQ--------------------------------ATTLGEIV   61 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHH-HHTTCEEEEECTTCC--------------------------------CSSCCSEE
T ss_pred             cccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHH--------------------------------HhccCCEE
Confidence            468899999999999999999997 578999999987521                                46789999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~  276 (328)
                      ++++| ++.++.++. +....++ ++++|++++|--
T Consensus        62 i~av~-~~~~~~v~~-~l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           62 IMAVP-YPALAALAK-QYATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             EECSC-HHHHHHHHH-HTHHHHT-TSEEEECCCCBC
T ss_pred             EEcCC-cHHHHHHHH-HHHHhcC-CCEEEEECCCCC
Confidence            99999 667777664 3445577 999999999765

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.65  E-value=9.2e-07  Score=81.16  Aligned_cols=170  Identities=17%  Similarity=0.234  Sum_probs=108.0

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      ..++.|.+.+.+..++ ..+++|+.+.+.     +..++++++.+  ..++++ +++...-.  |=+    -|+-.+++-
T Consensus        57 ~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~--KDV----Dg~~~~N~g  129 (285)
T 3p2o_A           57 ACEECGIKSLVYHLNE-NITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS--KDV----DGFHPINVG  129 (285)
T ss_dssp             HHHHHTCEEEEEEECT-TCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGG--GCT----TCCSHHHHH
T ss_pred             HHHHcCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCcc--ccc----ccCCHhhhh
Confidence            3455687776655433 357888877662     25789999864  345544 44444211  211    122222221


Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~  182 (328)
                      ..      ..+.++.....++.-++-+    +++                     .+.++.||++.|||.|. +|+.+|.
T Consensus       130 ~l------~~g~~~g~~PcTp~gv~~l----L~~---------------------~~i~l~Gk~vvVvGrs~iVG~p~A~  178 (285)
T 3p2o_A          130 YL------NLGLESGFLPCTPLGVMKL----LKA---------------------YEIDLEGKDAVIIGASNIVGRPMAT  178 (285)
T ss_dssp             HH------HTTCCSSCCCHHHHHHHHH----HHH---------------------TTCCCTTCEEEEECCCTTTHHHHHH
T ss_pred             hh------hcCCCCCCCCCCHHHHHHH----HHH---------------------hCCCCCCCEEEEECCCchHHHHHHH
Confidence            11      1122331344555554322    221                     13579999999999998 6999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (328)
Q Consensus       183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m  262 (328)
                      .| ...|++|..++++.                            .++++.+++||+|+.+++.    .++|..+.   +
T Consensus       179 lL-~~~gAtVtv~h~~t----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~---v  222 (285)
T 3p2o_A          179 ML-LNAGATVSVCHIKT----------------------------KDLSLYTRQADLIIVAAGC----VNLLRSDM---V  222 (285)
T ss_dssp             HH-HHTTCEEEEECTTC----------------------------SCHHHHHTTCSEEEECSSC----TTCBCGGG---S
T ss_pred             HH-HHCCCeEEEEeCCc----------------------------hhHHHHhhcCCEEEECCCC----CCcCCHHH---c
Confidence            97 68899999987532                            4788999999999999983    45677765   4


Q ss_pred             CCCcEEEEcCCCc
Q 020301          263 KKEAILVNCSRGP  275 (328)
Q Consensus       263 k~ga~lIN~aRG~  275 (328)
                      |+|+++||++.-.
T Consensus       223 k~GavVIDVgi~~  235 (285)
T 3p2o_A          223 KEGVIVVDVGINR  235 (285)
T ss_dssp             CTTEEEEECCCEE
T ss_pred             CCCeEEEEeccCc
Confidence            9999999998543

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.64  E-value=2.8e-07  Score=83.08  Aligned_cols=102  Identities=16%  Similarity=0.220  Sum_probs=74.2

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      .++||||+|.||+.+|+.| ...|.+|.+||+++... +...+.|       +.     ....+++++++++|+|++++|
T Consensus         4 m~i~iiG~G~mG~~~a~~l-~~~g~~v~~~~~~~~~~-~~~~~~~-------g~-----~~~~~~~~~~~~~D~Vi~~v~   69 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGL-KQTPHELIISGSSLERS-KEIAEQL-------AL-----PYAMSHQDLIDQVDLVILGIK   69 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTSSCEEEEECSSHHHH-HHHHHHH-------TC-----CBCSSHHHHHHTCSEEEECSC
T ss_pred             cEEEEECCCHHHHHHHHHH-HhCCCeEEEECCCHHHH-HHHHHHc-------CC-----EeeCCHHHHHhcCCEEEEEeC
Confidence            4799999999999999997 57789999999986532 2222111       21     124688999999999999999


Q ss_pred             CChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                       ....     .+.+..+++|.++|+...|-  ..+.+.+.+..+
T Consensus        70 -~~~~-----~~v~~~l~~~~~vv~~~~~~--~~~~l~~~~~~~  105 (259)
T 2ahr_A           70 -PQLF-----ETVLKPLHFKQPIISMAAGI--SLQRLATFVGQD  105 (259)
T ss_dssp             -GGGH-----HHHHTTSCCCSCEEECCTTC--CHHHHHHHHCTT
T ss_pred             -cHhH-----HHHHHHhccCCEEEEeCCCC--CHHHHHHhcCCC
Confidence             3333     34555677899999997664  345677777654

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.62  E-value=6.3e-08  Score=85.47  Aligned_cols=95  Identities=17%  Similarity=0.228  Sum_probs=68.4

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .+++++|||+|.||+.+|+.| ...|.+|.+|||+.... +.        +...+     .. ..+++++++++|+|+++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l-~~~g~~V~~~~r~~~~~-~~--------~~~~g-----~~-~~~~~~~~~~~DvVi~a   90 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRL-VGSGFKVVVGSRNPKRT-AR--------LFPSA-----AQ-VTFQEEAVSSPEVIFVA   90 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHH-HHTTCCEEEEESSHHHH-HH--------HSBTT-----SE-EEEHHHHTTSCSEEEEC
T ss_pred             CCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH--------HHHcC-----Cc-eecHHHHHhCCCEEEEC
Confidence            457899999999999999997 57799999999986432 11        11112     11 12788999999999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCCCcccC
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vd  278 (328)
                      +|. .....++.   +..+.+++++|++++|.-.+
T Consensus        91 v~~-~~~~~v~~---l~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A           91 VFR-EHYSSLCS---LSDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             SCG-GGSGGGGG---GHHHHTTCEEEECCCCCHHH
T ss_pred             CCh-HHHHHHHH---HHHhcCCCEEEEeCCCcccc
Confidence            994 45556553   44344799999999987543

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.59  E-value=1.2e-07  Score=85.27  Aligned_cols=105  Identities=24%  Similarity=0.345  Sum_probs=74.0

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCc----EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKM----NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      +++||||+|+||+.+|+.| ...|.    +|.+|||++... +...+.+       +     .....++++++++||+|+
T Consensus         3 ~~i~iIG~G~mG~~~a~~l-~~~g~~~~~~V~~~~r~~~~~-~~~~~~~-------g-----~~~~~~~~e~~~~aDvVi   68 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGM-INKNIVSSNQIICSDLNTANL-KNASEKY-------G-----LTTTTDNNEVAKNADILI   68 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HHTTSSCGGGEEEECSCHHHH-HHHHHHH-------C-----CEECSCHHHHHHHCSEEE
T ss_pred             CeEEEECccHHHHHHHHHH-HhCCCCCCCeEEEEeCCHHHH-HHHHHHh-------C-----CEEeCChHHHHHhCCEEE
Confidence            5799999999999999997 46787    999999986532 2221111       2     223468899999999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      +++| ......++ ++....++++.++|.+.-|  +..+.|.+.+..
T Consensus        69 lav~-~~~~~~v~-~~l~~~l~~~~~vvs~~~g--i~~~~l~~~~~~  111 (247)
T 3gt0_A           69 LSIK-PDLYASII-NEIKEIIKNDAIIVTIAAG--KSIESTENAFNK  111 (247)
T ss_dssp             ECSC-TTTHHHHC----CCSSCTTCEEEECSCC--SCHHHHHHHHCS
T ss_pred             EEeC-HHHHHHHH-HHHHhhcCCCCEEEEecCC--CCHHHHHHHhCC
Confidence            9997 33445555 4455668899999977655  445677777754

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.58  E-value=1.1e-06  Score=81.14  Aligned_cols=170  Identities=20%  Similarity=0.193  Sum_probs=106.8

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      ..++.|.+.+....++ ..+++|+.+.+.     +..++++++.+  ..++++ +++...--  |=+    -|+-.+++-
T Consensus        61 ~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~--KDV----DG~~~~N~G  133 (300)
T 4a26_A           61 AAAEVGMASFNVELPE-DISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPH--KDA----DALLPVNVG  133 (300)
T ss_dssp             HHHHTTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSCGG--GCT----TCCSHHHHH
T ss_pred             HHHHcCCeEEEEECCC-CCCHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCCcc--ccc----ccCCcceEE
Confidence            4456788776655433 357888877663     25789999864  345544 44433211  111    122212211


Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~  182 (328)
                      .... |-   ..++ ....+++-++.+    +++                     .+.++.|+++.|||.|. +|+.+|+
T Consensus       134 ~l~~-g~---~~~~-~~PcTp~gv~~l----L~~---------------------~~i~l~Gk~vvVIG~s~iVG~p~A~  183 (300)
T 4a26_A          134 LLHY-KG---REPP-FTPCTAKGVIVL----LKR---------------------CGIEMAGKRAVVLGRSNIVGAPVAA  183 (300)
T ss_dssp             HHHC-TT---CCCS-CCCHHHHHHHHH----HHH---------------------HTCCCTTCEEEEECCCTTTHHHHHH
T ss_pred             Eeec-CC---CcCC-CCCCCHHHHHHH----HHH---------------------cCCCCCCCEEEEECCCchHHHHHHH
Confidence            1111 10   0233 344555554422    221                     13579999999999988 6999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHH--HHhhcCCEEEEcCCCChhhhccccHHHHh
Q 020301          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EVLREADVISLHPVLDKTTYHLINKERLA  260 (328)
Q Consensus       183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--ell~~aDiV~l~~plt~~t~~li~~~~~~  260 (328)
                      .| ...|++|++++++.                            .+++  +.+++||+|+.++|.    .++|..+.  
T Consensus       184 lL-~~~gAtVtv~~~~T----------------------------~~l~l~~~~~~ADIVI~Avg~----p~~I~~~~--  228 (300)
T 4a26_A          184 LL-MKENATVTIVHSGT----------------------------STEDMIDYLRTADIVIAAMGQ----PGYVKGEW--  228 (300)
T ss_dssp             HH-HHTTCEEEEECTTS----------------------------CHHHHHHHHHTCSEEEECSCC----TTCBCGGG--
T ss_pred             HH-HHCCCeEEEEeCCC----------------------------CCchhhhhhccCCEEEECCCC----CCCCcHHh--
Confidence            97 68899999998642                            2455  899999999999994    34677765  


Q ss_pred             cCCCCcEEEEcCCC
Q 020301          261 TMKKEAILVNCSRG  274 (328)
Q Consensus       261 ~mk~ga~lIN~aRG  274 (328)
                       +|+|+++||++.-
T Consensus       229 -vk~GavVIDvgi~  241 (300)
T 4a26_A          229 -IKEGAAVVDVGTT  241 (300)
T ss_dssp             -SCTTCEEEECCCE
T ss_pred             -cCCCcEEEEEecc
Confidence             5999999999853

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.57  E-value=9.8e-08  Score=87.60  Aligned_cols=92  Identities=18%  Similarity=0.309  Sum_probs=69.1

Q ss_pred             CEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      ++|||||+ |.||+.+|+.| ...|.+|++||+++... +..        ...|.      ...++.++++.||+|++++
T Consensus        12 m~I~iIG~tG~mG~~la~~l-~~~g~~V~~~~r~~~~~-~~~--------~~~g~------~~~~~~~~~~~aDvVi~av   75 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKI-HDSAHHLAAIEIAPEGR-DRL--------QGMGI------PLTDGDGWIDEADVVVLAL   75 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHSSSEEEEECCSHHHH-HHH--------HHTTC------CCCCSSGGGGTCSEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHH--------HhcCC------CcCCHHHHhcCCCEEEEcC
Confidence            58999999 99999999997 57799999999986432 111        11121      1236678899999999999


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      |.. .+..++ ++....+++++++|+++.|.
T Consensus        76 ~~~-~~~~v~-~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           76 PDN-IIEKVA-EDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             CHH-HHHHHH-HHHGGGSCTTCEEEESCSHH
T ss_pred             Cch-HHHHHH-HHHHHhCCCCCEEEECCCCc
Confidence            943 355555 45556789999999998886

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.53  E-value=4.1e-07  Score=85.10  Aligned_cols=108  Identities=19%  Similarity=0.287  Sum_probs=76.1

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCch-hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg----~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (328)
                      +...+|||||+|.||..+|+.|+ ..|    .+|++|||++. ...+.. ..+       |     .....+..++++.|
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~-~~G~~~~~~V~v~~r~~~~~~~~~l-~~~-------G-----~~~~~~~~e~~~~a   85 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFT-AAGVLAAHKIMASSPDMDLATVSAL-RKM-------G-----VKLTPHNKETVQHS   85 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHH-HTTSSCGGGEEEECSCTTSHHHHHH-HHH-------T-----CEEESCHHHHHHHC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHH-HCCCCCcceEEEECCCccHHHHHHH-HHc-------C-----CEEeCChHHHhccC
Confidence            34457999999999999999974 567    78999999864 122221 111       2     12235788999999


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      |+|++++| ......++ ++....++++.++|+++-|-  ..+.|.+.+.+
T Consensus        86 DvVilav~-~~~~~~vl-~~l~~~l~~~~ivvs~s~gi--~~~~l~~~l~~  132 (322)
T 2izz_A           86 DVLFLAVK-PHIIPFIL-DEIGADIEDRHIVVSCAAGV--TISSIEKKLSA  132 (322)
T ss_dssp             SEEEECSC-GGGHHHHH-HHHGGGCCTTCEEEECCTTC--CHHHHHHHHHT
T ss_pred             CEEEEEeC-HHHHHHHH-HHHHhhcCCCCEEEEeCCCC--CHHHHHHHHhh
Confidence            99999999 45566655 34555688999999997663  45567777764

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.53  E-value=4.2e-07  Score=83.45  Aligned_cols=112  Identities=12%  Similarity=0.139  Sum_probs=77.8

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCc---EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      .++|||||+|+||+.+|+.++ .-|.   +|.+|||++... ++..+.|       +     .....+..+++++||+|+
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~-~~g~~~~~V~v~dr~~~~~-~~l~~~~-------g-----i~~~~~~~~~~~~aDvVi   68 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLI-ANGYDPNRICVTNRSLDKL-DFFKEKC-------G-----VHTTQDNRQGALNADVVV   68 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHH-HTTCCGGGEEEECSSSHHH-HHHHHTT-------C-----CEEESCHHHHHSSCSEEE
T ss_pred             CCEEEEEcccHHHHHHHHHHH-HCCCCCCeEEEEeCCHHHH-HHHHHHc-------C-----CEEeCChHHHHhcCCeEE
Confidence            468999999999999999974 5677   899999987542 2221111       2     223468889999999999


Q ss_pred             EcCCCChhhhccccHHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHcC-CccEE
Q 020301          242 LHPVLDKTTYHLINKERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQN-PMFRV  294 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~-mk~ga~lIN~aRG~~vde~aL~~aL~~g-~i~ga  294 (328)
                      +++|. .....++ ++.-.. ++++.++|+++-|  +..+.|.+.+..+ ++.++
T Consensus        69 lav~p-~~~~~vl-~~l~~~~l~~~~iiiS~~ag--i~~~~l~~~l~~~~~vvr~  119 (280)
T 3tri_A           69 LAVKP-HQIKMVC-EELKDILSETKILVISLAVG--VTTPLIEKWLGKASRIVRA  119 (280)
T ss_dssp             ECSCG-GGHHHHH-HHHHHHHHTTTCEEEECCTT--CCHHHHHHHHTCCSSEEEE
T ss_pred             EEeCH-HHHHHHH-HHHHhhccCCCeEEEEecCC--CCHHHHHHHcCCCCeEEEE
Confidence            99983 3444444 333344 6888899988766  4467888888652 34443

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.53  E-value=3.7e-07  Score=88.87  Aligned_cols=124  Identities=15%  Similarity=0.242  Sum_probs=81.7

Q ss_pred             cccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhh--------hhhhhcCCCCCccccccCCH
Q 020301          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSM  230 (328)
Q Consensus       159 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l  230 (328)
                      .+++..-.+|+|||+|.||..+|..|+ . |.+|++||+++... +......        .+.... +  .......+++
T Consensus        30 ~~r~~~~mkIaVIGlG~mG~~lA~~La-~-G~~V~~~D~~~~~v-~~l~~g~~~i~e~~l~~ll~~-~--~~~l~~ttd~  103 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYVGLSNGVLIA-Q-NHEVVALDIVQAKV-DMLNQKISPIVDKEIQEYLAE-K--PLNFRATTDK  103 (432)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHH-T-TSEEEEECSCHHHH-HHHHTTCCSSCCHHHHHHHHH-S--CCCEEEESCH
T ss_pred             cccccCCCEEEEECcCHHHHHHHHHHH-c-CCeEEEEecCHHHh-hHHhccCCccccccHHHHHhh-c--cCCeEEEcCH
Confidence            456677779999999999999999975 5 99999999987532 1111000        000000 0  0112234688


Q ss_pred             HHHhhcCCEEEEcCCCChhh-------hccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          231 DEVLREADVISLHPVLDKTT-------YHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       231 ~ell~~aDiV~l~~plt~~t-------~~li--~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      ++.++.||+|++++|...+.       ..+.  -+.... +++|+++|+.|.-.+--.+.+.+.+.+.
T Consensus       104 ~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~  170 (432)
T 3pid_A          104 HDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGID  170 (432)
T ss_dssp             HHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCC
T ss_pred             HHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhc
Confidence            99999999999999954221       1221  144556 9999999999988877788888888764

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.47  E-value=8.5e-07  Score=81.97  Aligned_cols=130  Identities=13%  Similarity=0.137  Sum_probs=80.4

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHH--HHh-hhhhhhhcCCCCCc-------------cccccCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVT-AYGQFLKANGEQPV-------------TWKRASS  229 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~--~~~-~~~~~~~~~~~~~~-------------~~~~~~~  229 (328)
                      ++|+|||.|.||..+|..++ ..|.+|++||+++......  ... .+. .....|....             ......+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la-~~G~~V~~~d~~~~~~~~~~~~i~~~l~-~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~   93 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAA-ATGHTVVLVDQTEDILAKSKKGIEESLR-KVAKKKFAENPKAGDEFVEKTLSTIATSTD   93 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHHHHHH-HHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCeEEEEECCHHHHHHHHHHHHHHHH-HHHHcCCCCccccchhhHHHHHhceEEecC
Confidence            68999999999999999985 5699999999986532110  000 000 0011121100             1122468


Q ss_pred             HHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCC
Q 020301          230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (328)
Q Consensus       230 l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~  300 (328)
                      +++.++.||+|++++|...+.+.-+-++....++++++++..+.|  +....+.+.+... -.-.++..+.
T Consensus        94 ~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~--i~~~~l~~~~~~~-~~~~g~h~~~  161 (302)
T 1f0y_A           94 AASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATTRQ-DRFAGLHFFN  161 (302)
T ss_dssp             HHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSSCG-GGEEEEEECS
T ss_pred             HHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCC--CCHHHHHHhcCCc-ccEEEEecCC
Confidence            888899999999999976655443434555668899999855444  3445666655422 1235555554

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.42  E-value=3.4e-07  Score=82.57  Aligned_cols=101  Identities=18%  Similarity=0.216  Sum_probs=69.2

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      +|||||+|.||+.+|+.|+ ..| .+|.+|||++... +...+.|       +.     ....++++++ .+|+|++++|
T Consensus         2 ~i~iiG~G~mG~~~a~~l~-~~g~~~v~~~~r~~~~~-~~~~~~~-------g~-----~~~~~~~~~~-~~D~vi~~v~   66 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLV-KQGGYRIYIANRGAEKR-ERLEKEL-------GV-----ETSATLPELH-SDDVLILAVK   66 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HHCSCEEEEECSSHHHH-HHHHHHT-------CC-----EEESSCCCCC-TTSEEEECSC
T ss_pred             EEEEECchHHHHHHHHHHH-HCCCCeEEEECCCHHHH-HHHHHhc-------CC-----EEeCCHHHHh-cCCEEEEEeC
Confidence            7999999999999999974 568 8999999986432 2221111       21     1234666778 9999999999


Q ss_pred             CChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                       ......++.+  +.. + +.++|+++.|--  .+.|.+.+..+
T Consensus        67 -~~~~~~v~~~--l~~-~-~~ivv~~~~g~~--~~~l~~~~~~~  103 (263)
T 1yqg_A           67 -PQDMEAACKN--IRT-N-GALVLSVAAGLS--VGTLSRYLGGT  103 (263)
T ss_dssp             -HHHHHHHHTT--CCC-T-TCEEEECCTTCC--HHHHHHHTTSC
T ss_pred             -chhHHHHHHH--hcc-C-CCEEEEecCCCC--HHHHHHHcCCC
Confidence             5555544431  222 4 899999965533  37777777664

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.41  E-value=9.1e-07  Score=86.22  Aligned_cols=118  Identities=10%  Similarity=0.086  Sum_probs=77.3

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCC--------CccccccCCHHHHhhcCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--------PVTWKRASSMDEVLREAD  238 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~ell~~aD  238 (328)
                      +|+|||+|.||..+|..|+ ..|.+|++||+++... +...... ......+..        ........++++.++.||
T Consensus         2 kI~VIG~G~vG~~~A~~la-~~G~~V~~~d~~~~~~-~~l~~~~-~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aD   78 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLS-ARGHEVIGVDVSSTKI-DLINQGK-SPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSD   78 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHTTC-CSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred             EEEEECCCHHHHHHHHHHH-HCCCEEEEEECCHHHH-HHHhCCC-CCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCC
Confidence            7999999999999999984 6799999999986532 1111000 000000000        001223467888999999


Q ss_pred             EEEEcCCCChh---------hhccccHHHHhcCCC---CcEEEEcCCCcccC-HHHHHHHHHc
Q 020301          239 VISLHPVLDKT---------TYHLINKERLATMKK---EAILVNCSRGPVID-EVALVEHLKQ  288 (328)
Q Consensus       239 iV~l~~plt~~---------t~~li~~~~~~~mk~---ga~lIN~aRG~~vd-e~aL~~aL~~  288 (328)
                      +|++|+|...+         .+..+ ++....+++   +.++|+.|...+-. .+.+.+.|++
T Consensus        79 vviiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           79 VSFICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             EEEEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            99999995544         33332 444556788   99999998766545 5677777776

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.40  E-value=7.1e-07  Score=81.95  Aligned_cols=168  Identities=17%  Similarity=0.173  Sum_probs=105.9

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHHH-HHHhhccCCceEEEccccCCccChhH
Q 020301           33 LIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDVNA  104 (328)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~~-l~~~~~l~~k~i~~~g~G~d~id~~~  104 (328)
                      -++.|.+.+.+..++ ..+++|+.+.+.     +..|+++++.+  ..+++.. ++...-.  |       -+|.+-...
T Consensus        58 ~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~--K-------DVDG~~p~n  127 (288)
T 1b0a_A           58 CEEVGFVSRSYDLPE-TTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPD--K-------DVDGFHPYN  127 (288)
T ss_dssp             HHHHTCEECCEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTTSCTT--T-------CTTCCSHHH
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhccCCc--c-------CcccCCccc
Confidence            345577665444332 357888876662     25689999863  3444443 3332111  1       222222111


Q ss_pred             HHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHHH
Q 020301          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (328)
Q Consensus       105 ~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~~  183 (328)
                      .   |-.+.+.++ ....+++-++.+ |   ++                     .+.++.|+++.|||.|. +|+.+|+.
T Consensus       128 ~---g~l~~g~~~-~~PcTp~gi~~l-l---~~---------------------~~i~l~gk~vvVIG~s~iVG~p~A~l  178 (288)
T 1b0a_A          128 V---GRLCQRAPR-LRPCTPRGIVTL-L---ER---------------------YNIDTFGLNAVVIGASNIVGRPMSME  178 (288)
T ss_dssp             H---HHHHTTCCS-SCCHHHHHHHHH-H---HH---------------------TTCCCTTCEEEEECCCTTTHHHHHHH
T ss_pred             h---hHHhCCCCC-CCCCcHHHHHHH-H---HH---------------------cCCCCCCCEEEEECCChHHHHHHHHH
Confidence            1   111122343 445566653322 2   21                     13579999999999997 59999999


Q ss_pred             HHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCC
Q 020301          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (328)
Q Consensus       184 l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk  263 (328)
                      | .+.|++|..++++.                            .++.+.+++||+|+.+++.    .+++..+.+   |
T Consensus       179 L-~~~gAtVtv~hs~t----------------------------~~L~~~~~~ADIVI~Avg~----p~lI~~~~v---k  222 (288)
T 1b0a_A          179 L-LLAGCTTTVTHRFT----------------------------KNLRHHVENADLLIVAVGK----PGFIPGDWI---K  222 (288)
T ss_dssp             H-HTTTCEEEEECSSC----------------------------SCHHHHHHHCSEEEECSCC----TTCBCTTTS---C
T ss_pred             H-HHCCCeEEEEeCCc----------------------------hhHHHHhccCCEEEECCCC----cCcCCHHHc---C
Confidence            7 68999999987532                            4788999999999999983    336777664   8


Q ss_pred             CCcEEEEcCCCc
Q 020301          264 KEAILVNCSRGP  275 (328)
Q Consensus       264 ~ga~lIN~aRG~  275 (328)
                      +|+++||++.-.
T Consensus       223 ~GavVIDVgi~r  234 (288)
T 1b0a_A          223 EGAIVIDVGINR  234 (288)
T ss_dssp             TTCEEEECCCEE
T ss_pred             CCcEEEEccCCc
Confidence            999999998643

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.40  E-value=1.1e-06  Score=80.59  Aligned_cols=168  Identities=19%  Similarity=0.223  Sum_probs=106.9

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      ..++.|.+.+.+..++ ..+++|+.+.+.     +..++++++.+  ..+++. +++...--  |=+    -|+-.+++-
T Consensus        59 ~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~--KDV----DG~~~~N~g  131 (286)
T 4a5o_A           59 DCEEVGFLSQAYDLPA-ETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPD--KDV----DGFHPYNIG  131 (286)
T ss_dssp             HHHHTTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCGG--GCT----TCCSHHHHH
T ss_pred             HHHHcCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCcc--ccc----ccCChhhhH
Confidence            4456788776655433 357888876652     15789999864  345543 44433211  111    122212211


Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~  182 (328)
                      ...      .+.++ ....++.-++-+    +++                     .+.++.||++.|||.|. +|+.+|.
T Consensus       132 ~l~------~g~~~-~~PcTp~gv~~l----L~~---------------------~~i~l~Gk~vvVvGrs~iVG~plA~  179 (286)
T 4a5o_A          132 RLA------QRMPL-LRPCTPKGIMTL----LAS---------------------TGADLYGMDAVVVGASNIVGRPMAL  179 (286)
T ss_dssp             HHH------TTCCS-SCCHHHHHHHHH----HHH---------------------TTCCCTTCEEEEECTTSTTHHHHHH
T ss_pred             HHh------cCCCC-CCCCCHHHHHHH----HHH---------------------hCCCCCCCEEEEECCCchhHHHHHH
Confidence            111      12233 344555554322    221                     13579999999999987 7999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (328)
Q Consensus       183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m  262 (328)
                      .| .+.|++|..++++.                            .+|++.+++||+|+.+++.    .++|..+.+   
T Consensus       180 lL-~~~gAtVtv~hs~T----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~v---  223 (286)
T 4a5o_A          180 EL-LLGGCTVTVTHRFT----------------------------RDLADHVSRADLVVVAAGK----PGLVKGEWI---  223 (286)
T ss_dssp             HH-HHTTCEEEEECTTC----------------------------SCHHHHHHTCSEEEECCCC----TTCBCGGGS---
T ss_pred             HH-HHCCCeEEEEeCCC----------------------------cCHHHHhccCCEEEECCCC----CCCCCHHHc---
Confidence            97 68999999886531                            3788999999999999983    456777654   


Q ss_pred             CCCcEEEEcCCC
Q 020301          263 KKEAILVNCSRG  274 (328)
Q Consensus       263 k~ga~lIN~aRG  274 (328)
                      |||+++||++.-
T Consensus       224 k~GavVIDvgi~  235 (286)
T 4a5o_A          224 KEGAIVIDVGIN  235 (286)
T ss_dssp             CTTCEEEECCSC
T ss_pred             CCCeEEEEeccc
Confidence            999999999853

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.39  E-value=1.8e-06  Score=84.60  Aligned_cols=119  Identities=15%  Similarity=0.169  Sum_probs=77.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCC--------CccccccCCHHHHhhcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--------PVTWKRASSMDEVLREA  237 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~ell~~a  237 (328)
                      .+|+|||+|.+|..+|..|+ ..|.+|++||+++... +...+.... ....+..        ........+++++++.|
T Consensus         3 mkI~VIG~G~vG~~lA~~La-~~G~~V~~~D~~~~~v-~~l~~g~~~-i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~a   79 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFA-ELGANVRCIDTDRNKI-EQLNSGTIP-IYEPGLEKMIARNVKAGRLRFGTEIEQAVPEA   79 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHHTCSC-CCSTTHHHHHHHHHHTTSEEEESCHHHHGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHH-hcCCEEEEEECCHHHH-HHHHcCCCc-ccCCCHHHHHHhhcccCcEEEECCHHHHHhcC
Confidence            58999999999999999985 6799999999986532 111110000 0000000        01122346889999999


Q ss_pred             CEEEEcCCCCh---------hhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          238 DVISLHPVLDK---------TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       238 DiV~l~~plt~---------~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      |+|++|+|...         ..+..+ +.....+++|.++|+.|.-.+=..+.+.+.+++
T Consensus        80 DvViiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           80 DIIFIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CEEEEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            99999999543         233333 556677899999999996444445566666654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.38  E-value=1.2e-06  Score=82.28  Aligned_cols=118  Identities=14%  Similarity=0.153  Sum_probs=75.2

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCC-Cccc-cccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTW-KRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~ell~~aDiV~l~  243 (328)
                      ++++|||+|.||..+|..| ...|.+|.+||+++... +...+.++......+.. .... ....+++++++.+|+|+++
T Consensus         5 mki~iiG~G~~G~~~a~~L-~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~   82 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYL-ALKGQSVLAWDIDAQRI-KEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   82 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEe
Confidence            5899999999999999997 46799999999986432 22111110000000000 0000 1235888989999999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      +|.. .+..++ +.....+++++++|+. -|.......+.+.+.+
T Consensus        83 v~~~-~~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~  124 (359)
T 1bg6_A           83 VPAI-HHASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE  124 (359)
T ss_dssp             SCGG-GHHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred             CCch-HHHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence            9954 445544 5556678999999998 4422344445666655

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.36  E-value=1.1e-06  Score=80.27  Aligned_cols=164  Identities=10%  Similarity=0.136  Sum_probs=104.1

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHHHH-HHhhccCCceEEEccccCCccChhH
Q 020301           33 LIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGETLF-AALSRAGGKAFSNMAVGYNNVDVNA  104 (328)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~~l-~~~~~l~~k~i~~~g~G~d~id~~~  104 (328)
                      -++.|. .+....++ ..+++|+.+.+.     +..|+++++.+  ..+++..+ +...-.  |       -+|.+--. 
T Consensus        52 ~~~~Gi-~~~~~lp~-~~s~~ell~~I~~lN~D~~v~GIlvqlPLP~~id~~~v~~~I~p~--K-------DVDG~~p~-  119 (276)
T 3ngx_A           52 GKKIGI-AVDLEKYD-DISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYY--K-------DVDALSPY-  119 (276)
T ss_dssp             HHHHTC-EEEEEEES-SCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTCCHHHHHTTSCGG--G-------BTTCCSHH-
T ss_pred             HHHCCe-EEEEECCC-CCCHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCHHHHHhhCCCC--C-------cccCCCcc-
Confidence            345677 65544433 357888887762     26789999864  44555433 222111  1       22222111 


Q ss_pred             HHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHHH
Q 020301          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (328)
Q Consensus       105 ~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~~  183 (328)
                        ..|-.+.+.++ ....++.-++.++    ++                     .+  +.|+++.|||.|. +|+.+|+.
T Consensus       120 --n~G~l~~g~~~-~~PcTp~gv~~lL----~~---------------------~~--l~Gk~vvVvG~s~iVG~plA~l  169 (276)
T 3ngx_A          120 --NQGLIALNREF-LVPATPRAVIDIM----DY---------------------YG--YHENTVTIVNRSPVVGRPLSMM  169 (276)
T ss_dssp             --HHHHHHTTCCS-SCCHHHHHHHHHH----HH---------------------HT--CCSCEEEEECCCTTTHHHHHHH
T ss_pred             --chhhhhcCCCC-CCCCcHHHHHHHH----HH---------------------hC--cCCCEEEEEcCChHHHHHHHHH
Confidence              11111122344 3445555544222    11                     12  8999999999986 79999999


Q ss_pred             HHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCC
Q 020301          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (328)
Q Consensus       184 l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk  263 (328)
                      | .+.|++|++++++.                            .++++.+++||+|+.+++.    .+++..+.   +|
T Consensus       170 L-~~~gAtVtv~~~~t----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~---vk  213 (276)
T 3ngx_A          170 L-LNRNYTVSVCHSKT----------------------------KDIGSMTRSSKIVVVAVGR----PGFLNREM---VT  213 (276)
T ss_dssp             H-HHTTCEEEEECTTC----------------------------SCHHHHHHHSSEEEECSSC----TTCBCGGG---CC
T ss_pred             H-HHCCCeEEEEeCCc----------------------------ccHHHhhccCCEEEECCCC----CccccHhh---cc
Confidence            7 68899999987531                            4788999999999999984    34677765   49


Q ss_pred             CCcEEEEcCCC
Q 020301          264 KEAILVNCSRG  274 (328)
Q Consensus       264 ~ga~lIN~aRG  274 (328)
                      +|+++||++.-
T Consensus       214 ~GavVIDvgi~  224 (276)
T 3ngx_A          214 PGSVVIDVGIN  224 (276)
T ss_dssp             TTCEEEECCCE
T ss_pred             CCcEEEEeccC
Confidence            99999999853

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.36  E-value=2.2e-06  Score=74.61  Aligned_cols=123  Identities=12%  Similarity=0.150  Sum_probs=81.7

Q ss_pred             EEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       167 tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      +++|+| .|.||+.+|+.| ...|.+|.++||++... +...+.++.... .+    .. ...+++++++++|+|++++|
T Consensus         2 ~i~iiGa~G~~G~~ia~~l-~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~-~~----~~-~~~~~~~~~~~~D~Vi~~~~   73 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRL-ATLGHEIVVGSRREEKA-EAKAAEYRRIAG-DA----SI-TGMKNEDAAEACDIAVLTIP   73 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSHHHH-HHHHHHHHHHHS-SC----CE-EEEEHHHHHHHCSEEEECSC
T ss_pred             eEEEEcCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHhccccc-cC----CC-ChhhHHHHHhcCCEEEEeCC
Confidence            699999 999999999997 47799999999986432 221111110000 00    01 12578889999999999999


Q ss_pred             CChhhhccccHHHHhcCCCCcEEEEcCCCcccC------------HHHHHHHHHcCCccEEEEeCCCCCCC
Q 020301          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVID------------EVALVEHLKQNPMFRVGLDVFEDEPY  304 (328)
Q Consensus       246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vd------------e~aL~~aL~~g~i~gaalDV~~~EP~  304 (328)
                       ...++.++. +....++ +.++|+++.|--.+            .+.|.+.+..    ...++++.++|.
T Consensus        74 -~~~~~~~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~----~~~v~~~~~~~~  137 (212)
T 1jay_A           74 -WEHAIDTAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES----EKVVSALHTIPA  137 (212)
T ss_dssp             -HHHHHHHHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC----SCEEECCTTCCH
T ss_pred             -hhhHHHHHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC----CeEEEEccchHH
Confidence             344554443 3333454 89999999875533            5777777753    345688877764

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.36  E-value=1.3e-06  Score=79.95  Aligned_cols=169  Identities=18%  Similarity=0.195  Sum_probs=109.1

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChhH
Q 020301           33 LIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (328)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~~  104 (328)
                      -++.|.+.+.+..++ ..+++|+.+.+.     +..|+++++.+  ..+++. +++...-.  |=|    -|+..+++-.
T Consensus        57 ~~~~Gi~~~~~~lp~-~~s~~ell~~i~~lN~D~~v~GIlvqlPlP~~id~~~i~~~I~p~--KDV----DG~~p~n~g~  129 (281)
T 2c2x_A           57 CAKVGITSIRRDLPA-DISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPA--KDA----DGLHPTNLGR  129 (281)
T ss_dssp             HHHHTCEEEEEEECT-TCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGG--GBT----TSCCHHHHHH
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc--CCc----cCCChhhHHH
Confidence            445687776655443 357888887663     26789999864  345444 34443211  211    1222222221


Q ss_pred             HHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHH-HHHHHHH
Q 020301          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYARM  183 (328)
Q Consensus       105 ~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~I-G~~vA~~  183 (328)
                      .      +.+.++ ....+++-++-++-    +                     .+.++.|+++.|||.|.| |+.+|+.
T Consensus       130 l------~~g~~~-~~PcTp~gi~~ll~----~---------------------~~i~l~gk~vvVvG~s~iVG~p~A~l  177 (281)
T 2c2x_A          130 L------VLGTPA-PLPCTPRGIVHLLR----R---------------------YDISIAGAHVVVIGRGVTVGRPLGLL  177 (281)
T ss_dssp             H------HHTCCC-CCCHHHHHHHHHHH----H---------------------TTCCCTTCEEEEECCCTTTHHHHHHH
T ss_pred             H------hCCCCC-CCCChHHHHHHHHH----H---------------------cCCCCCCCEEEEECCCcHHHHHHHHH
Confidence            1      122343 45566666443222    1                     135799999999999985 9999999


Q ss_pred             HHhcC--CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhc
Q 020301          184 MVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (328)
Q Consensus       184 l~~~f--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~  261 (328)
                      | ...  |++|+.++++.                            .++.+.+++||+|+.+++.    .++|..+.+  
T Consensus       178 L-~~~g~~atVtv~h~~t----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~v--  222 (281)
T 2c2x_A          178 L-TRRSENATVTLCHTGT----------------------------RDLPALTRQADIVVAAVGV----AHLLTADMV--  222 (281)
T ss_dssp             H-TSTTTCCEEEEECTTC----------------------------SCHHHHHTTCSEEEECSCC----TTCBCGGGS--
T ss_pred             H-hcCCCCCEEEEEECch----------------------------hHHHHHHhhCCEEEECCCC----CcccCHHHc--
Confidence            7 677  89999987532                            4788999999999999983    336877764  


Q ss_pred             CCCCcEEEEcCCCcc
Q 020301          262 MKKEAILVNCSRGPV  276 (328)
Q Consensus       262 mk~ga~lIN~aRG~~  276 (328)
                       |+|+++||++.-.+
T Consensus       223 -k~GavVIDVgi~r~  236 (281)
T 2c2x_A          223 -RPGAAVIDVGVSRT  236 (281)
T ss_dssp             -CTTCEEEECCEEEE
T ss_pred             -CCCcEEEEccCCCC
Confidence             89999999987553

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.36  E-value=1.2e-06  Score=80.40  Aligned_cols=168  Identities=14%  Similarity=0.226  Sum_probs=107.3

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      ..++.|.+.+....++ ..+++|+.+.+.     +..++++++.+  ..++++ +++....-  |=+    -|+-.+++-
T Consensus        58 ~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~--KDV----DG~~~~N~G  130 (285)
T 3l07_A           58 ACAQVGIDSQVITLPE-HTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE--KDV----DGFHPTNVG  130 (285)
T ss_dssp             HHHHHTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGG--GBT----TCCSHHHHH
T ss_pred             HHHHcCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCcc--ccc----ccCChhhee
Confidence            3456687776655433 357888876662     25789999864  345544 44444211  211    122222221


Q ss_pred             HHHhCCceEecC-CCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHH
Q 020301          104 AANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (328)
Q Consensus       104 ~~~~~gI~v~n~-p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA  181 (328)
                      ...      .+. ++ ....++.-++.+    +++                     .+.++.|+++.|||.|. +|+.+|
T Consensus       131 ~l~------~g~~~~-~~PcTp~gv~~l----L~~---------------------~~i~l~Gk~vvVIG~s~iVG~p~A  178 (285)
T 3l07_A          131 RLQ------LRDKKC-LESCTPKGIMTM----LRE---------------------YGIKTEGAYAVVVGASNVVGKPVS  178 (285)
T ss_dssp             HHH------HTCTTC-CCCHHHHHHHHH----HHH---------------------TTCCCTTCEEEEECCCTTTHHHHH
T ss_pred             ehh------cCCCCC-CCCCCHHHHHHH----HHH---------------------hCCCCCCCEEEEECCCchhHHHHH
Confidence            111      112 33 344555554422    211                     13579999999999998 699999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhc
Q 020301          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (328)
Q Consensus       182 ~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~  261 (328)
                      +.| .+.|++|..++++.                            .++++.+++||+|+.+++.    .++|..+.   
T Consensus       179 ~lL-~~~gAtVtv~hs~t----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~---  222 (285)
T 3l07_A          179 QLL-LNAKATVTTCHRFT----------------------------TDLKSHTTKADILIVAVGK----PNFITADM---  222 (285)
T ss_dssp             HHH-HHTTCEEEEECTTC----------------------------SSHHHHHTTCSEEEECCCC----TTCBCGGG---
T ss_pred             HHH-HHCCCeEEEEeCCc----------------------------hhHHHhcccCCEEEECCCC----CCCCCHHH---
Confidence            997 68999999886531                            4788999999999999983    45677765   


Q ss_pred             CCCCcEEEEcCCC
Q 020301          262 MKKEAILVNCSRG  274 (328)
Q Consensus       262 mk~ga~lIN~aRG  274 (328)
                      +|+|+++||++.-
T Consensus       223 vk~GavVIDvgi~  235 (285)
T 3l07_A          223 VKEGAVVIDVGIN  235 (285)
T ss_dssp             SCTTCEEEECCCE
T ss_pred             cCCCcEEEEeccc
Confidence            4999999999853

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.35  E-value=1.4e-06  Score=80.41  Aligned_cols=169  Identities=14%  Similarity=0.229  Sum_probs=107.4

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CC--ccHH-HHHHhhccCCceEEEccccCCccCh
Q 020301           33 LIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--ED--WGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (328)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~--~~~~-~l~~~~~l~~k~i~~~g~G~d~id~  102 (328)
                      -++.|.+.+.+..++ ..+++|+.+.+.     +..|+++++.+  ..  +++. +++...-.  |       -+|.+-.
T Consensus        60 ~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i~~~I~p~--K-------DVDG~hp  129 (301)
T 1a4i_A           60 AEEIGIKATHIKLPR-TTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPE--K-------DVDGLTS  129 (301)
T ss_dssp             HHHHTCEEEEEEECT-TCCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHTSCGG--G-------BTTCCSH
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHHHHHhccCCC--C-------CccCCCh
Confidence            445687776655433 357788876653     26789999864  23  5554 33333211  2       2232221


Q ss_pred             hHHHhCCceEecC--CCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHH
Q 020301          103 NAANKYGIAVGNT--PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSA  179 (328)
Q Consensus       103 ~~~~~~gI~v~n~--p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~  179 (328)
                      ...   |-.+.+.  ++ ....+++-++. +|   ++                     .+.++.|+++.|||.|. +|+.
T Consensus       130 ~N~---G~l~~g~~~~~-~~PcTp~gi~~-ll---~~---------------------~~i~l~gk~vvVIG~s~iVG~p  180 (301)
T 1a4i_A          130 INA---GRLARGDLNDC-FIPCTPKGCLE-LI---KE---------------------TGVPIAGRHAVVVGRSKIVGAP  180 (301)
T ss_dssp             HHH---HHHHTTCCSSC-CCCHHHHHHHH-HH---HT---------------------TTCCCTTCEEEEECCCTTTHHH
T ss_pred             hhH---HHHhcCCCCCC-ccCchHHHHHH-HH---HH---------------------cCCCCCCCEEEEECCCchHHHH
Confidence            111   1011111  32 34455655332 22   21                     23579999999999996 6999


Q ss_pred             HHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHH
Q 020301          180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL  259 (328)
Q Consensus       180 vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~  259 (328)
                      +|+.| .+.|++|..++++.                            .++.+.+++||+|+.+++.    .++|..+. 
T Consensus       181 ~A~lL-~~~gAtVtv~hs~t----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~-  226 (301)
T 1a4i_A          181 MHDLL-LWNNATVTTCHSKT----------------------------AHLDEEVNKGDILVVATGQ----PEMVKGEW-  226 (301)
T ss_dssp             HHHHH-HHTTCEEEEECTTC----------------------------SSHHHHHTTCSEEEECCCC----TTCBCGGG-
T ss_pred             HHHHH-HhCCCeEEEEECCc----------------------------ccHHHHhccCCEEEECCCC----cccCCHHH-
Confidence            99997 68999999987431                            4789999999999999985    34687776 


Q ss_pred             hcCCCCcEEEEcCCCcc
Q 020301          260 ATMKKEAILVNCSRGPV  276 (328)
Q Consensus       260 ~~mk~ga~lIN~aRG~~  276 (328)
                        +|||+++||++.-.+
T Consensus       227 --vk~GavVIDVgi~~~  241 (301)
T 1a4i_A          227 --IKPGAIVIDCGINYV  241 (301)
T ss_dssp             --SCTTCEEEECCCBC-
T ss_pred             --cCCCcEEEEccCCCc
Confidence              479999999997553

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.34  E-value=3.2e-06  Score=82.68  Aligned_cols=119  Identities=14%  Similarity=0.166  Sum_probs=78.2

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCC--------CccccccCCHHHHhhcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--------PVTWKRASSMDEVLREA  237 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~ell~~a  237 (328)
                      -+++|||+|.+|..+|..|+ ..|.+|++||+++... +....... .....+..        +......+++.+.++.|
T Consensus         9 ~~~~vIGlG~vG~~~A~~La-~~G~~V~~~D~~~~kv-~~l~~g~~-~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~a   85 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFS-DFGHEVVCVDKDARKI-ELLHQNVM-PIYEPGLDALVASNVKAGRLSFTTDLAEGVKDA   85 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCSTTH-HHHTTTCC-SSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTC
T ss_pred             eEEEEEcCCHHHHHHHHHHH-HCCCEEEEEeCCHHHH-HHHhcCCC-CccCCCHHHHHHhhcccCCEEEECCHHHHHhcC
Confidence            46999999999999999985 6799999999987542 21110000 00000000        01122346888999999


Q ss_pred             CEEEEcCCCChh----------hhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          238 DVISLHPVLDKT----------TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       238 DiV~l~~plt~~----------t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      |+|++|+|...+          .+..+ +.....+++|.++|+.|.-.+=-.+.+.+.+.+
T Consensus        86 Dvvii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e  145 (446)
T 4a7p_A           86 DAVFIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAE  145 (446)
T ss_dssp             SEEEECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH
Confidence            999999984332          22322 556778999999999986554455667777665

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.33  E-value=1.3e-06  Score=78.75  Aligned_cols=99  Identities=23%  Similarity=0.335  Sum_probs=68.4

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ..+|||||+|.||+.+|+.|+ ..|    .+|.+||+++..                    .+.....+++++++.||+|
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~-~~g~~~~~~v~~~~~~~~~--------------------~g~~~~~~~~~~~~~~D~v   62 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIA-NANIIKKENLFYYGPSKKN--------------------TTLNYMSSNEELARHCDII   62 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHH-HHTSSCGGGEEEECSSCCS--------------------SSSEECSCHHHHHHHCSEE
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HCCCCCCCeEEEEeCCccc--------------------CceEEeCCHHHHHhcCCEE
Confidence            357999999999999999974 456    689999987532                    0112235788999999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      ++++| ....+.++. +....++ +..+|...-|  ++.+.+.+.+.++
T Consensus        63 i~~v~-~~~~~~v~~-~l~~~l~-~~~vv~~~~g--i~~~~l~~~~~~~  106 (262)
T 2rcy_A           63 VCAVK-PDIAGSVLN-NIKPYLS-SKLLISICGG--LNIGKLEEMVGSE  106 (262)
T ss_dssp             EECSC-TTTHHHHHH-HSGGGCT-TCEEEECCSS--CCHHHHHHHHCTT
T ss_pred             EEEeC-HHHHHHHHH-HHHHhcC-CCEEEEECCC--CCHHHHHHHhCCC
Confidence            99999 455555543 3444554 5555555444  4445677777654

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.33  E-value=1.5e-06  Score=85.90  Aligned_cols=131  Identities=19%  Similarity=0.267  Sum_probs=84.9

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHH--HH-hhhhhhhhcCCCCCc--------cccccCCHHHHh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FV-TAYGQFLKANGEQPV--------TWKRASSMDEVL  234 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~--~~-~~~~~~~~~~~~~~~--------~~~~~~~l~ell  234 (328)
                      ++|||||.|.||..+|..++ ..|.+|++||+++......  .. +.+.. ....|....        ......+++ .+
T Consensus         6 ~kVgVIGaG~MG~~IA~~la-~aG~~V~l~D~~~e~l~~~~~~i~~~l~~-~~~~g~~~~~~~~~~~~~i~~~~~~~-~~   82 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAA-SHGHQVLLYDISAEALTRAIDGIHARLNS-RVTRGKLTAETCERTLKRLIPVTDIH-AL   82 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-HTTCCEEEECSCHHHHHHHHHHHHHHHHT-TTTTTSSCHHHHHHHHHTEEEECCGG-GG
T ss_pred             CEEEEECcCHHHHHHHHHHH-HCCCeEEEEECCHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHhceeEeCCHH-Hh
Confidence            57999999999999999985 6699999999987542211  00 01100 011121110        111235665 58


Q ss_pred             hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCC
Q 020301          235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (328)
Q Consensus       235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~l-IN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP  303 (328)
                      +.||+|+.++|...+.+.-+-++..+.++++++| .|+|.-   ..+.|.+++.. .-.-.++..|.+-|
T Consensus        83 ~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti---~i~~ia~~~~~-p~~~ig~hf~~Pa~  148 (483)
T 3mog_A           83 AAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSI---SITAIAAEIKN-PERVAGLHFFNPAP  148 (483)
T ss_dssp             GGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSS---CHHHHTTTSSS-GGGEEEEEECSSTT
T ss_pred             cCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCC---CHHHHHHHccC-ccceEEeeecChhh
Confidence            9999999999977766654556677789999999 577653   44566666643 34567777776544

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.29  E-value=4.2e-06  Score=79.53  Aligned_cols=118  Identities=13%  Similarity=0.119  Sum_probs=77.1

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh-cCCC-CCccccccCCHHHHhhcCCEEEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGE-QPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      .++|+|||.|.+|..+|..|+ ..|.+|..|++++... +...+ .+.... ..+. .+.......++++.++.||+|++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La-~~G~~V~l~~r~~~~~-~~i~~-~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVil  105 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLA-RKGQKVRLWSYESDHV-DEMQA-EGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILI  105 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHH-TTTCCEEEECSCHHHH-HHHHH-HSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEE
T ss_pred             CCeEEEECccHHHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHH-cCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEE
Confidence            468999999999999999984 6789999999976431 11111 000000 0010 01112233688999999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCH----HHHHHHHH
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE----VALVEHLK  287 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde----~aL~~aL~  287 (328)
                      ++|. ...+.++ ++....+++++++|+++-|-..++    +.+.+.+.
T Consensus       106 aVp~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~  152 (356)
T 3k96_A          106 VVPS-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELG  152 (356)
T ss_dssp             CCCH-HHHHHHH-HHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHC
T ss_pred             CCCH-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcC
Confidence            9993 3455544 455567889999999988766553    34445443

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.28  E-value=1.2e-06  Score=81.83  Aligned_cols=102  Identities=16%  Similarity=0.145  Sum_probs=70.4

Q ss_pred             cccccCCCEEEEEecCHH-HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc---c--CCHHH
Q 020301          159 VGNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---A--SSMDE  232 (328)
Q Consensus       159 ~~~~l~g~tvgIiG~G~I-G~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~l~e  232 (328)
                      .+.++.|+++.|||.|.| |+.+|+.| .+.|++|+++||+.....+.        ...-+........   .  .++++
T Consensus       171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L-~~~gAtVtv~nR~~~~l~~r--------a~~la~~~~~~t~~~~t~~~~L~e  241 (320)
T 1edz_A          171 EGNRLYGKKCIVINRSEIVGRPLAALL-ANDGATVYSVDVNNIQKFTR--------GESLKLNKHHVEDLGEYSEDLLKK  241 (320)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHH-HTTSCEEEEECSSEEEEEES--------CCCSSCCCCEEEEEEECCHHHHHH
T ss_pred             cCCCCCCCEEEEECCCcchHHHHHHHH-HHCCCEEEEEeCchHHHHhH--------HHHHhhhcccccccccccHhHHHH
Confidence            356899999999999975 99999997 68999999999874321100        0000000000000   1  47899


Q ss_pred             HhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       233 ll~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      .+++||+|+.+++..   .-+|..+.   +|+|+++||+|.-.
T Consensus       242 ~l~~ADIVIsAtg~p---~~vI~~e~---vk~GavVIDVgi~r  278 (320)
T 1edz_A          242 CSLDSDVVITGVPSE---NYKFPTEY---IKEGAVCINFACTK  278 (320)
T ss_dssp             HHHHCSEEEECCCCT---TCCBCTTT---SCTTEEEEECSSSC
T ss_pred             HhccCCEEEECCCCC---cceeCHHH---cCCCeEEEEcCCCc
Confidence            999999999998841   22377766   48999999998653

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.25  E-value=4.1e-06  Score=82.67  Aligned_cols=120  Identities=17%  Similarity=0.151  Sum_probs=76.6

Q ss_pred             CEEEEEecCHHHHHHHHHHHhc-CCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCC-------CccccccCCHHHHhhcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-------PVTWKRASSMDEVLREA  237 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~-fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~ell~~a  237 (328)
                      .+|+|||+|.||..+|..|++. .|.+|++||+++... +....... .....+..       .......+++.+.++.|
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v-~~l~~g~~-~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~a   87 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKI-AEWNSDKL-PIYEPGLDEIVFAARGRNLFFSSDIPKAIAEA   87 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHH-HHHTSSSC-SSCCTTHHHHHHHHBTTTEEEESCHHHHHHHC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHH-HHHHCCCC-CcCCCCHHHHHHHhhcCCEEEECCHHHHhhcC
Confidence            5899999999999999998643 389999999986532 11100000 00000000       00122235777889999


Q ss_pred             CEEEEcCCCChh--------------hhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          238 DVISLHPVLDKT--------------TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       238 DiV~l~~plt~~--------------t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      |+|++|+|....              .... -+.....+++|.++|+.|.-.+=..+.+.+.|++
T Consensus        88 Dvvii~Vptp~~~~g~~~~~~~dl~~v~~~-~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~  151 (481)
T 2o3j_A           88 DLIFISVNTPTKMYGRGKGMAPDLKYVESV-SRTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE  151 (481)
T ss_dssp             SEEEECCCCCBCCSSTTTTTSBCCHHHHHH-HHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CEEEEecCCccccccccccCCCcHHHHHHH-HHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence            999999985332              1222 2445677999999999886555445667777876

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.25  E-value=5e-06  Score=80.19  Aligned_cols=110  Identities=15%  Similarity=0.230  Sum_probs=75.4

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCC-------------CccccccCCHHHH
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-------------PVTWKRASSMDEV  233 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~el  233 (328)
                      +|+|||+|.||..+|..|+ . |.+|++||+++... +..        ...+..             ........++.+.
T Consensus         2 kI~VIG~G~vG~~~A~~La-~-G~~V~~~d~~~~~~-~~l--------~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~   70 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLS-L-QNEVTIVDILPSKV-DKI--------NNGLSPIQDEYIEYYLKSKQLSIKATLDSKAA   70 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHT-T-TSEEEEECSCHHHH-HHH--------HTTCCSSCCHHHHHHHHHSCCCEEEESCHHHH
T ss_pred             EEEEECCCHHHHHHHHHHh-C-CCEEEEEECCHHHH-HHH--------HcCCCCcCCCCHHHHHHhccCcEEEeCCHHHH
Confidence            7999999999999999984 5 99999999986432 111        111110             0011223567888


Q ss_pred             hhcCCEEEEcCCCCh----------hhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          234 LREADVISLHPVLDK----------TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       234 l~~aDiV~l~~plt~----------~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      ++.||+|++|+|...          .....+ +.... ++++.++|+.+.-++-..+.+.+.+.+.
T Consensus        71 ~~~aDvviiavpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~  134 (402)
T 1dlj_A           71 YKEAELVIIATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD  134 (402)
T ss_dssp             HHHCSEEEECCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred             hcCCCEEEEecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC
Confidence            999999999999653          233333 34555 8899999997766665567777776554

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.24  E-value=5.8e-06  Score=74.87  Aligned_cols=106  Identities=16%  Similarity=0.159  Sum_probs=75.7

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      +.| +++|||.|.+|+.++..| ...|+ +|++++|+..+. ++..+            ..+.....++++.++++|+|+
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L-~~~G~~~I~v~nR~~~ka-~~la~------------~~~~~~~~~~~~~~~~aDiVI  171 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYAL-LQMGVKDIWVVNRTIERA-KALDF------------PVKIFSLDQLDEVVKKAKSLF  171 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHH-HHTTCCCEEEEESCHHHH-HTCCS------------SCEEEEGGGHHHHHHTCSEEE
T ss_pred             CCC-eEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHH------------HcccCCHHHHHhhhcCCCEEE
Confidence            568 899999999999999997 57898 899999986532 11100            111123357788899999999


Q ss_pred             EcCCCChhh-hccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          242 LHPVLDKTT-YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       242 l~~plt~~t-~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      +++|..-.. ...++.+.   ++++.+++++.-+   .+.-|.+|.+.|
T Consensus       172 natp~gm~p~~~~i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          172 NTTSVGMKGEELPVSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             ECSSTTTTSCCCSCCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             ECCCCCCCCCCCCCCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            999864211 22345444   4689999999888   666667777766

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.23  E-value=3.1e-06  Score=77.67  Aligned_cols=110  Identities=15%  Similarity=0.140  Sum_probs=73.3

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ++.|+++.|+|.|.+|+.++..| ...|+ +|.+++|+.... ++        +.    .........+++++++++|+|
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L-~~~G~~~v~v~~R~~~~a-~~--------la----~~~~~~~~~~~~~~~~~aDiV  179 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANEL-YKIVRPTLTVANRTMSRF-NN--------WS----LNINKINLSHAESHLDEFDII  179 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHH-HTTCCSCCEEECSCGGGG-TT--------CC----SCCEEECHHHHHHTGGGCSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HH--------HH----HhcccccHhhHHHHhcCCCEE
Confidence            57899999999999999999997 58898 899999987531 10        00    011111234566778899999


Q ss_pred             EEcCCCC--hhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          241 SLHPVLD--KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       241 ~l~~plt--~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      +.+.|..  ++....++   .+.++++.+++++.-.+. .+.-|.+|-+.|
T Consensus       180 InaTp~Gm~~~~~~~l~---~~~l~~~~~V~D~vY~P~-~T~ll~~A~~~G  226 (277)
T 3don_A          180 INTTPAGMNGNTDSVIS---LNRLASHTLVSDIVYNPY-KTPILIEAEQRG  226 (277)
T ss_dssp             EECCC-------CCSSC---CTTCCSSCEEEESCCSSS-SCHHHHHHHHTT
T ss_pred             EECccCCCCCCCcCCCC---HHHcCCCCEEEEecCCCC-CCHHHHHHHHCc
Confidence            9999964  23222233   456789999999987643 344344454445

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.23  E-value=3.5e-06  Score=78.44  Aligned_cols=109  Identities=19%  Similarity=0.196  Sum_probs=72.0

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcC--CchhHHHHHHhhhhhhhhcCCCCC------ccccccC--CHHHHhhc
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDL--YQATRLEKFVTAYGQFLKANGEQP------VTWKRAS--SMDEVLRE  236 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~l~ell~~  236 (328)
                      +|+|||.|.||..+|..|+ ..|.+|.+||+  ++.. .+..        ...+...      .......  ++++.++.
T Consensus         2 ~I~iiG~G~mG~~~a~~L~-~~g~~V~~~~r~~~~~~-~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   71 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLV-DNGNEVRIWGTEFDTEI-LKSI--------SAGREHPRLGVKLNGVEIFWPEQLEKCLEN   71 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHH-HHCCEEEEECCGGGHHH-HHHH--------HTTCCBTTTTBCCCSEEEECGGGHHHHHTT
T ss_pred             EEEEECcCHHHHHHHHHHH-hCCCeEEEEEccCCHHH-HHHH--------HHhCcCcccCccccceEEecHHhHHHHHhc
Confidence            7999999999999999974 56889999999  6432 1211        1111100      0001223  67788899


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc---cc-CHHHHHHHHHc
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP---VI-DEVALVEHLKQ  288 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~---~v-de~aL~~aL~~  288 (328)
                      +|+|++++|. ..+..++ +.... ++++.++|+++.|-   -. ..+.+.+.+.+
T Consensus        72 ~D~vi~~v~~-~~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           72 AEVVLLGVST-DGVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             CSEEEECSCG-GGHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             CCEEEEcCCh-HHHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            9999999994 3555544 34445 88899999998774   11 22446666654

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.22  E-value=3.4e-06  Score=79.34  Aligned_cols=108  Identities=17%  Similarity=0.187  Sum_probs=70.0

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCC-------cEEEEEcCCchh----HHHHHHhhhhhhhh-cCCC-CCccccccCCHH
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFK-------MNLIYYDLYQAT----RLEKFVTAYGQFLK-ANGE-QPVTWKRASSMD  231 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg-------~~V~~~d~~~~~----~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~  231 (328)
                      .++|+|||.|.||..+|..|+ ..|       .+|.+||++...    ..+.... .+.... ..+. .+.......+++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~-~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~   85 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVG-GNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINT-QHENVKYLPGHKLPPNVVAVPDVV   85 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHH-HHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHH-HSCCTTTSTTCCCCTTEEEESSHH
T ss_pred             CCeEEEECCCHHHHHHHHHHH-hcCCcccCCCCeEEEEEcChhhhhhHHHHHHHh-cCcccccCCcccCccCeEEEcCHH
Confidence            358999999999999999975 446       899999998651    1111110 000000 0010 011122235788


Q ss_pred             HHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc
Q 020301          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (328)
Q Consensus       232 ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~  276 (328)
                      ++++.||+|++++|. ..+..++ ++....+++++++|+++.|-.
T Consensus        86 ~~~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           86 QAAEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HHHTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             HHHcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            989999999999993 4555544 344566789999999988754

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.20  E-value=2.1e-06  Score=70.69  Aligned_cols=103  Identities=12%  Similarity=0.120  Sum_probs=74.5

Q ss_pred             cCCCEEEEEec----CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          163 LKGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       163 l~g~tvgIiG~----G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      .+-++|+|||.    |.+|+.+++.| ...|.+|+.+||.....                   .+...+.+++|+....|
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L-~~~G~~V~~vnp~~~~i-------------------~G~~~~~s~~el~~~vD   71 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDL-LSKGFEVLPVNPNYDEI-------------------EGLKCYRSVRELPKDVD   71 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSEE-------------------TTEECBSSGGGSCTTCC
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHH-HHCCCEEEEeCCCCCeE-------------------CCeeecCCHHHhCCCCC
Confidence            45678999999    99999999997 57799988888764210                   12233568999999999


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      ++++++| .+....++. +..+ ...++++++++.    ..+.|.++.++..+.
T Consensus        72 lvii~vp-~~~v~~v~~-~~~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~  118 (138)
T 1y81_A           72 VIVFVVP-PKVGLQVAK-EAVE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE  118 (138)
T ss_dssp             EEEECSC-HHHHHHHHH-HHHH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred             EEEEEeC-HHHHHHHHH-HHHH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence            9999999 566677664 3444 666777777743    256777777765554

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.19  E-value=6e-06  Score=81.48  Aligned_cols=120  Identities=13%  Similarity=0.133  Sum_probs=74.6

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCC--------CccccccCCHHHHhhc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--------PVTWKRASSMDEVLRE  236 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~ell~~  236 (328)
                      ..+|+|||+|.||..+|..|+ ..|.+|++||+++... +...... ......+..        .......+++++.++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la-~~G~~V~~~d~~~~~v-~~l~~~~-~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~   84 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLA-DIGHDVFCLDVDQAKI-DILNNGG-VPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAH   84 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHTTC-CSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHH
T ss_pred             CceEEEECcCHHHHHHHHHHH-hCCCEEEEEECCHHHH-HHHHCCC-CCcCCCCHHHHHHHhcccCCEEEECCHHHHhhc
Confidence            358999999999999999985 6799999999986432 2111100 000000100        0012234578888999


Q ss_pred             CCEEEEcCCCC---------hhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          237 ADVISLHPVLD---------KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       237 aDiV~l~~plt---------~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      ||+|++|+|..         ...+..+ +.....+++++++|+.+.-.+=..+.+.+.+.+
T Consensus        85 aDvviiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~  144 (478)
T 2y0c_A           85 GDVQFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAE  144 (478)
T ss_dssp             CSEEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHH
Confidence            99999999942         2333333 445567999999999984323233445555543

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.18  E-value=1.3e-05  Score=78.70  Aligned_cols=131  Identities=17%  Similarity=0.196  Sum_probs=79.3

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHh-hhhhh-----hhcCCCCCccccccCCHHHHhhc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT-AYGQF-----LKANGEQPVTWKRASSMDEVLRE  236 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~~-~~~~~-----~~~~~~~~~~~~~~~~l~ell~~  236 (328)
                      -++|||||.|.||..+|..++ ..|.+|++||+++.....  +... .+...     ...............++ +.++.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la-~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~  114 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFA-RVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELST  114 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTT
T ss_pred             CCEEEEECcCHHHHHHHHHHH-hCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCC
Confidence            468999999999999999974 679999999998753211  0000 00000     00000001001113466 46899


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~  300 (328)
                      ||+|+.++|...+.+.-+-++.-..++++++|+..+.+  +....|.++++. .-.-.++..|.
T Consensus       115 aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~--~~~~~la~~~~~-~~~~ig~hf~~  175 (463)
T 1zcj_A          115 VDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTDR-PQLVIGTHFFS  175 (463)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSSC-GGGEEEEEECS
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--cCHHHHHHHhcC-CcceEEeecCC
Confidence            99999999965544444445566678999999874333  344567766643 22346666663

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.17  E-value=2e-06  Score=81.43  Aligned_cols=107  Identities=14%  Similarity=0.174  Sum_probs=69.4

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh-cCCC-CCccccccCCHHHHhhcCCEEEEcC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGE-QPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      +|+|||.|.||..+|..| ...|.+|.+||+++... +...+. +.... ..+. .+.......+++++++.||+|++++
T Consensus        17 kI~iIG~G~mG~~la~~L-~~~G~~V~~~~r~~~~~-~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav   93 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVL-SKKCREVCVWHMNEEEV-RLVNEK-RENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVI   93 (366)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTEEEEEEECSCHHHH-HHHHHH-TBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECC
T ss_pred             eEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHHc-CcccccccccccccceeeeCCHHHHHcCCCEEEECC
Confidence            899999999999999997 46789999999986432 211110 00000 0000 0111223357889999999999999


Q ss_pred             CCChhhhccccHH---HHhcCCC-CcEEEEcCCCccc
Q 020301          245 VLDKTTYHLINKE---RLATMKK-EAILVNCSRGPVI  277 (328)
Q Consensus       245 plt~~t~~li~~~---~~~~mk~-ga~lIN~aRG~~v  277 (328)
                      |. ..+..++...   ....+++ ++++|+++.|-..
T Consensus        94 ~~-~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           94 PT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             CH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             Ch-HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            93 5555555331   4455678 8999999877443

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.16  E-value=8.3e-06  Score=84.28  Aligned_cols=129  Identities=19%  Similarity=0.181  Sum_probs=81.7

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHH-hhhhhhhhcCCCCCc--------cccccCCHHHH
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFV-TAYGQFLKANGEQPV--------TWKRASSMDEV  233 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~-~~~~~~~~~~~~~~~--------~~~~~~~l~el  233 (328)
                      =++|||||.|.||..+|..++ ..|.+|++||+++.....  ... +.+. .....|....        ......++ +.
T Consensus       314 i~kV~VIGaG~MG~~iA~~la-~aG~~V~l~D~~~~~~~~~~~~i~~~l~-~~~~~G~~~~~~~~~~~~~i~~~~d~-~~  390 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSA-SKGTPILMKDINEHGIEQGLAEAAKLLV-GRVDKGRMTPAKMAEVLNGIRPTLSY-GD  390 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHH-HTTCCEEEECSSHHHHHHHHHHHHHHHH-HHHTTTSSCHHHHHHHHHHEEEESSS-TT
T ss_pred             CCEEEEECCChhhHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHH-HHHhcCCCCHHHHHHHhcCeEEECCH-HH
Confidence            357999999999999999985 569999999998753211  000 0000 0111221100        01123456 67


Q ss_pred             hhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCccEEEEeCCC
Q 020301          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (328)
Q Consensus       234 l~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gaalDV~~  300 (328)
                      ++.||+|+.++|.+.+.+.-+-++..+.++++++|+ |+|.   +....+.+.+.. .-.-.++..|.
T Consensus       391 ~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt---l~i~~la~~~~~-~~~~ig~hf~~  454 (715)
T 1wdk_A          391 FGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST---ISISLLAKALKR-PENFVGMHFFN  454 (715)
T ss_dssp             GGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS---SCHHHHGGGCSC-GGGEEEEECCS
T ss_pred             HCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC---CCHHHHHHHhcC-ccceEEEEccC
Confidence            899999999999877766545456667889999997 5543   344566665532 22346777766

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.15  E-value=1.6e-05  Score=74.18  Aligned_cols=95  Identities=18%  Similarity=0.299  Sum_probs=66.3

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      ..++++|||.|.+|+..++.+++.++ -+|.+|||+ +.  +++.+.+..   ..+.   ..... ++++++++||+|++
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a--~~la~~l~~---~~g~---~~~~~-~~~eav~~aDIVi~  189 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-AS--PEILERIGR---RCGV---PARMA-APADIAAQADIVVT  189 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CC--HHHHHHHHH---HHTS---CEEEC-CHHHHHHHCSEEEE
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HH--HHHHHHHHH---hcCC---eEEEe-CHHHHHhhCCEEEE
Confidence            35789999999999999998754444 589999999 32  222222110   0121   11233 89999999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      |.|.+   ..++..   +.+|||+++++++.-
T Consensus       190 aT~s~---~pvl~~---~~l~~G~~V~~vGs~  215 (313)
T 3hdj_A          190 ATRST---TPLFAG---QALRAGAFVGAIGSS  215 (313)
T ss_dssp             CCCCS---SCSSCG---GGCCTTCEEEECCCS
T ss_pred             ccCCC---CcccCH---HHcCCCcEEEECCCC
Confidence            99853   456654   357999999998753

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.14  E-value=5.1e-06  Score=81.87  Aligned_cols=116  Identities=15%  Similarity=0.147  Sum_probs=73.3

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcC-Cc-EEEEEcCCchh---HHHHHHhhhhhhh--hcCCCC--------CccccccCCH
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGF-KM-NLIYYDLYQAT---RLEKFVTAYGQFL--KANGEQ--------PVTWKRASSM  230 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~f-g~-~V~~~d~~~~~---~~~~~~~~~~~~~--~~~~~~--------~~~~~~~~~l  230 (328)
                      ++|+|||+|.+|..+|..|+ .. |. +|++||+++.+   ..+....... ..  ...+..        .......++ 
T Consensus        19 mkIaVIGlG~mG~~lA~~la-~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~-~i~~~e~gl~~l~~~~~~~g~l~~ttd-   95 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFA-DAPCFEKVLGFQRNSKSSGYKIEMLNRGES-PLKGEEPGLEELIGKVVKAGKFECTPD-   95 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HSTTCCEEEEECCCCTTTTTHHHHHTTTCC-CSSCCGGGHHHHHHHHHHTTCEEEESC-
T ss_pred             CEEEEECcCHHHHHHHHHHH-HhCCCCeEEEEECChhHhHHHHHHHHhcCC-CccccCCCHHHHHHhhcccCCeEEeCc-
Confidence            58999999999999999985 56 88 99999998761   1111110000 00  000000        001111234 


Q ss_pred             HHHhhcCCEEEEcCCCCh--------hhhccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 020301          231 DEVLREADVISLHPVLDK--------TTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVE  284 (328)
Q Consensus       231 ~ell~~aDiV~l~~plt~--------~t~~li--~~~~~~~mk~ga~lIN~aRG~~vde~aL~~  284 (328)
                      .+.++.||+|++|+|...        ++..+.  -+.....+++|.++|+.|.-.+=-.+.+.+
T Consensus        96 ~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~  159 (478)
T 3g79_A           96 FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAK  159 (478)
T ss_dssp             GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHH
T ss_pred             HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHH
Confidence            678899999999999542        222232  245677899999999998766655556654

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.12  E-value=6.1e-06  Score=73.53  Aligned_cols=96  Identities=24%  Similarity=0.260  Sum_probs=71.3

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEE-EEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-hcCCEEEEcC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLHP  244 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~~  244 (328)
                      ++||||+|.||+.+++.+. .-|+++ .+||++...  +                .    .+.++++++ .++|+|++|+
T Consensus         2 ~vgiIG~G~mG~~~~~~l~-~~g~~lv~v~d~~~~~--~----------------~----~~~~~~~l~~~~~DvVv~~~   58 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLE-RNGFEIAAILDVRGEH--E----------------K----MVRGIDEFLQREMDVAVEAA   58 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HTTCEEEEEECSSCCC--T----------------T----EESSHHHHTTSCCSEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHh-cCCCEEEEEEecCcch--h----------------h----hcCCHHHHhcCCCCEEEECC
Confidence            7999999999999999974 678887 688987421  0                0    246899999 6999999999


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCC
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP  290 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde---~aL~~aL~~g~  290 (328)
                      |.  +...   +.....++.|..+|..+-+..-+.   +.|.++.++..
T Consensus        59 ~~--~~~~---~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g  102 (236)
T 2dc1_A           59 SQ--QAVK---DYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTG  102 (236)
T ss_dssp             CH--HHHH---HHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHC
T ss_pred             CH--HHHH---HHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcC
Confidence            93  2211   223455678999999988887666   67777776633

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.12  E-value=9.5e-06  Score=78.95  Aligned_cols=112  Identities=20%  Similarity=0.236  Sum_probs=73.2

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH--------
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV--------  233 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el--------  233 (328)
                      --+|+++.|||+|.+|..+|..|+ ..|.+|++||+++... +...         .+..+.   ....++++        
T Consensus         8 ~~~~~~~~ViGlGyvGlp~A~~La-~~G~~V~~~D~~~~kv-~~L~---------~g~~pi---~epgl~~ll~~~~~~g   73 (431)
T 3ojo_A            8 HHHGSKLTVVGLGYIGLPTSIMFA-KHGVDVLGVDINQQTI-DKLQ---------NGQISI---EEPGLQEVYEEVLSSG   73 (431)
T ss_dssp             ----CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHHH-HHHH---------TTCCSS---CCTTHHHHHHHHHHTT
T ss_pred             cccCCccEEEeeCHHHHHHHHHHH-HCCCEEEEEECCHHHH-HHHH---------CCCCCc---CCCCHHHHHHhhcccC
Confidence            357899999999999999999985 6799999999987542 2111         111111   01122222        


Q ss_pred             -------hhcCCEEEEcCCCChhh--------hccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020301          234 -------LREADVISLHPVLDKTT--------YHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (328)
Q Consensus       234 -------l~~aDiV~l~~plt~~t--------~~li--~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~  287 (328)
                             ++.||+|++|+|.....        ..+.  -+...+.|++|+++|+.|.-.+=-.+.+.+.+.
T Consensus        74 ~l~~ttd~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~  144 (431)
T 3ojo_A           74 KLKVSTTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVI  144 (431)
T ss_dssp             CEEEESSCCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHH
T ss_pred             ceEEeCchhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHH
Confidence                   35799999999954321        1232  245677799999999999766656667766543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.10  E-value=1.6e-05  Score=73.57  Aligned_cols=114  Identities=16%  Similarity=0.170  Sum_probs=75.1

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ++.|++++|+|.|.+|+.+|..| ...|+ +|++++|+... .++..+.++       ..........++.+.+.++|+|
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L-~~~G~~~V~v~nR~~~k-a~~la~~~~-------~~~~~~~~~~~~~~~~~~aDiv  208 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSL-LSTAAERIDMANRTVEK-AERLVREGD-------ERRSAYFSLAEAETRLAEYDII  208 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HTTTCSEEEEECSSHHH-HHHHHHHSC-------SSSCCEECHHHHHHTGGGCSEE
T ss_pred             CCCCCEEEEECcHHHHHHHHHHH-HHCCCCEEEEEeCCHHH-HHHHHHHhh-------hccCceeeHHHHHhhhccCCEE
Confidence            47799999999999999999997 57898 99999998643 222222211       1000011112566778999999


Q ss_pred             EEcCCCChhhh--c-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          241 SLHPVLDKTTY--H-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       241 ~l~~plt~~t~--~-li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      +.++|......  . .++   .+.++++.+++|++-.+ ..+. |.++.++.
T Consensus       209 In~t~~~~~~~~~~~~i~---~~~l~~~~~v~D~~y~P-~~T~-ll~~A~~~  255 (297)
T 2egg_A          209 INTTSVGMHPRVEVQPLS---LERLRPGVIVSDIIYNP-LETK-WLKEAKAR  255 (297)
T ss_dssp             EECSCTTCSSCCSCCSSC---CTTCCTTCEEEECCCSS-SSCH-HHHHHHHT
T ss_pred             EECCCCCCCCCCCCCCCC---HHHcCCCCEEEEcCCCC-CCCH-HHHHHHHC
Confidence            99999664311  1 233   34578999999998753 3343 55555543

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.10  E-value=1.6e-05  Score=82.31  Aligned_cols=129  Identities=19%  Similarity=0.180  Sum_probs=79.6

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHH--HH-hhhhhhhhcCCCCC--------ccccccCCHHHHh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FV-TAYGQFLKANGEQP--------VTWKRASSMDEVL  234 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~--~~-~~~~~~~~~~~~~~--------~~~~~~~~l~ell  234 (328)
                      ++|||||.|.||..+|..++ ..|.+|++||+++......  .. +.+.. ....|...        .......++ +.+
T Consensus       313 ~kV~VIGaG~MG~~iA~~la-~aG~~V~l~D~~~~~~~~~~~~i~~~l~~-~~~~G~~~~~~~~~~~~~i~~~~d~-~~~  389 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVKANLQS-RVRKGSMSQEKFEKTMSLLKGSLDY-ESF  389 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-TTTCCEEEECSSHHHHHHHHHHHHHHHHH-TTC----CTTHHHHTTTSEEEESSS-GGG
T ss_pred             cEEEEEcCCHhhHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHH-HHhcCCCCHHHHHHHhcceEEeCCH-HHH
Confidence            67999999999999999975 6799999999987532111  00 00000 01111100        011123456 568


Q ss_pred             hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCC
Q 020301          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (328)
Q Consensus       235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~  300 (328)
                      +.||+|+.++|.+.+.+.-+-++..+.++++++++..+.+  +....+.+.++. .-.-.++..|.
T Consensus       390 ~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~-p~~~iG~hf~~  452 (725)
T 2wtb_A          390 RDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST--IDLNKIGERTKS-QDRIVGAHFFS  452 (725)
T ss_dssp             TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHTTTCSC-TTTEEEEEECS
T ss_pred             CCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHHhcC-CCCEEEecCCC
Confidence            9999999999977766554545666789999998643332  334556655532 22346666666

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.10  E-value=1.7e-05  Score=75.11  Aligned_cols=99  Identities=17%  Similarity=0.224  Sum_probs=68.9

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      ..+++||||.|.+|+.+++.++...+ -+|.+|||++.. .+++.+.+.    ..  .......+.++++++++||+|++
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~-a~~la~~~~----~~--~g~~~~~~~~~~eav~~aDiVi~  200 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLA-TAKLIANLK----EY--SGLTIRRASSVAEAVKGVDIITT  200 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHH-HHHHHHHHT----TC--TTCEEEECSSHHHHHTTCSEEEE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHH-HHHHHHHHH----hc--cCceEEEeCCHHHHHhcCCEEEE
Confidence            46789999999999999987644444 589999998753 233333221    10  01112335689999999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      |.|.. ....++..   +.+++|..+++++.
T Consensus       201 aTps~-~~~pvl~~---~~l~~G~~V~~vgs  227 (350)
T 1x7d_A          201 VTADK-AYATIITP---DMLEPGMHLNAVGG  227 (350)
T ss_dssp             CCCCS-SEEEEECG---GGCCTTCEEEECSC
T ss_pred             eccCC-CCCceecH---HHcCCCCEEEECCC
Confidence            99965 23445554   46789999999975

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.10  E-value=2.3e-06  Score=72.93  Aligned_cols=100  Identities=11%  Similarity=0.157  Sum_probs=65.4

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC---HHHH--h
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV--L  234 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el--l  234 (328)
                      .++.+.+++|+|+|.+|+.+|+.| +.. |.+|+++|+++... +.        ++..+..... ....+   +.++  +
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L-~~~~g~~V~vid~~~~~~-~~--------~~~~g~~~~~-gd~~~~~~l~~~~~~  103 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDEL-RARYGKISLGIEIREEAA-QQ--------HRSEGRNVIS-GDATDPDFWERILDT  103 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHH-HHHHCSCEEEEESCHHHH-HH--------HHHTTCCEEE-CCTTCHHHHHTBCSC
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHH-HhccCCeEEEEECCHHHH-HH--------HHHCCCCEEE-cCCCCHHHHHhccCC
Confidence            457788999999999999999997 577 99999999986532 11        1122221110 01122   3444  6


Q ss_pred             hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .++|+|++++|..+.+..++  ..++.+.++..+|..+.
T Consensus       104 ~~ad~vi~~~~~~~~~~~~~--~~~~~~~~~~~ii~~~~  140 (183)
T 3c85_A          104 GHVKLVLLAMPHHQGNQTAL--EQLQRRNYKGQIAAIAE  140 (183)
T ss_dssp             CCCCEEEECCSSHHHHHHHH--HHHHHTTCCSEEEEEES
T ss_pred             CCCCEEEEeCCChHHHHHHH--HHHHHHCCCCEEEEEEC
Confidence            78999999999644444333  35666776667766544

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.09  E-value=5.2e-06  Score=79.05  Aligned_cols=106  Identities=12%  Similarity=0.134  Sum_probs=67.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCC-------cEEEEEcCCchh----HHHHHHhhhhhhhh-cCCC-CCccccccCCHHH
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFK-------MNLIYYDLYQAT----RLEKFVTAYGQFLK-ANGE-QPVTWKRASSMDE  232 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg-------~~V~~~d~~~~~----~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~e  232 (328)
                      ++|+|||.|.||..+|..|+ .-|       .+|.+||+++..    ..+...+ .+.... ..+. .+.+.....++++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~-~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~i~~~~~~~e   99 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVG-TNAKNNYLFENEVRMWIRDEFVNGERMVDIINN-KHENTKYLKGVPLPHNIVAHSDLAS   99 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHH-HHHHHCTTBCSCEEEECCSCC---CCHHHHHHH-HCBCTTTSTTCBCCTTEEEESSTHH
T ss_pred             CEEEEECcCHHHHHHHHHHH-HcCCccCCCCCeEEEEECChhhhhHHHHHHHHh-cCcccccCCcccCcCCeEEECCHHH
Confidence            47999999999999999985 346       889999997641    1111111 000000 0010 0112223457888


Q ss_pred             HhhcCCEEEEcCCCChhhhccccHHHHh----cCCCCcEEEEcCCCc
Q 020301          233 VLREADVISLHPVLDKTTYHLINKERLA----TMKKEAILVNCSRGP  275 (328)
Q Consensus       233 ll~~aDiV~l~~plt~~t~~li~~~~~~----~mk~ga~lIN~aRG~  275 (328)
                      +++.||+|++++| +...+.++ ++...    .+++++++|+++.|-
T Consensus       100 a~~~aDvVilav~-~~~~~~vl-~~i~~~~~~~l~~~~ivvs~~~Gi  144 (375)
T 1yj8_A          100 VINDADLLIFIVP-CQYLESVL-ASIKESESIKIASHAKAISLTKGF  144 (375)
T ss_dssp             HHTTCSEEEECCC-HHHHHHHH-HHHTC---CCCCTTCEEEECCCSC
T ss_pred             HHcCCCEEEEcCC-HHHHHHHH-HHHhhhhhccCCCCCEEEEeCCcc
Confidence            8999999999999 35555554 23334    678899999998773

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.09  E-value=4.4e-06  Score=73.68  Aligned_cols=93  Identities=22%  Similarity=0.234  Sum_probs=61.1

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      -+++||||.|.||+.+|+.|+ ..|.+|.+ |||++... ++..+.+       +..     ...+..+.++.+|+|+++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~-~~g~~V~~v~~r~~~~~-~~l~~~~-------g~~-----~~~~~~~~~~~aDvVila   88 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFT-AAQIPAIIANSRGPASL-SSVTDRF-------GAS-----VKAVELKDALQADVVILA   88 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHH-HTTCCEEEECTTCGGGG-HHHHHHH-------TTT-----EEECCHHHHTTSSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCEEEEEECCCHHHH-HHHHHHh-------CCC-----cccChHHHHhcCCEEEEe
Confidence            468999999999999999974 67899998 99986532 2221111       111     112445568999999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      +|. .....++.+  +.. .++.++|+++-|-
T Consensus        89 vp~-~~~~~v~~~--l~~-~~~~ivi~~~~g~  116 (220)
T 4huj_A           89 VPY-DSIADIVTQ--VSD-WGGQIVVDASNAI  116 (220)
T ss_dssp             SCG-GGHHHHHTT--CSC-CTTCEEEECCCCB
T ss_pred             CCh-HHHHHHHHH--hhc-cCCCEEEEcCCCC
Confidence            992 233333321  122 3588999998553

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.08  E-value=5.2e-06  Score=75.44  Aligned_cols=95  Identities=11%  Similarity=0.093  Sum_probs=64.5

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCc--cc-cccCCHHHHhhcCCEEEEc
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TW-KRASSMDEVLREADVISLH  243 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~l~ell~~aDiV~l~  243 (328)
                      +|+|||.|.||..+|..|+ ..|.+|.+||++.... +.        +...+....  .. ....+ .+.++.+|+|+++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~-~~g~~V~~~~r~~~~~-~~--------l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~   70 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALC-KQGHEVQGWLRVPQPY-CS--------VNLVETDGSIFNESLTAND-PDFLATSDLLLVT   70 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HTTCEEEEECSSCCSE-EE--------EEEECTTSCEEEEEEEESC-HHHHHTCSEEEEC
T ss_pred             eEEEECcCHHHHHHHHHHH-hCCCCEEEEEcCccce-ee--------EEEEcCCCceeeeeeeecC-ccccCCCCEEEEE
Confidence            7999999999999999984 6789999999986431 10        111111000  00 01233 4677899999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      +|.. .+..++ ++....+++++++|++.-|
T Consensus        71 v~~~-~~~~v~-~~l~~~l~~~~~vv~~~~g   99 (291)
T 1ks9_A           71 LKAW-QVSDAV-KSLASTLPVTTPILLIHNG   99 (291)
T ss_dssp             SCGG-GHHHHH-HHHHTTSCTTSCEEEECSS
T ss_pred             ecHH-hHHHHH-HHHHhhCCCCCEEEEecCC
Confidence            9953 455555 4455678889999998665

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.07  E-value=6.3e-06  Score=77.21  Aligned_cols=112  Identities=15%  Similarity=0.238  Sum_probs=69.5

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      ..+++|||.|.||..+|..|+ .-|.+|.+|+|++... +...+. +......+.. .......++++ ++.+|+|++++
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~-~~G~~V~~~~r~~~~~-~~l~~~-g~~~~~~~~~-~~~~~~~~~~~-~~~aDvVil~v   88 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLH-ENGEEVILWARRKEIV-DLINVS-HTSPYVEESK-ITVRATNDLEE-IKKEDILVIAI   88 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HTTCEEEEECSSHHHH-HHHHHH-SCBTTBTTCC-CCSEEESCGGG-CCTTEEEEECS
T ss_pred             CCcEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHH-HHHHHh-CCcccCCCCe-eeEEEeCCHHH-hcCCCEEEEEC
Confidence            357999999999999999985 5689999999985432 221110 0000000000 01222357778 89999999999


Q ss_pred             CCChhhhccccHHHHhcCC-CCcEEEEcCCCcccC-HHHHHHHHH
Q 020301          245 VLDKTTYHLINKERLATMK-KEAILVNCSRGPVID-EVALVEHLK  287 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk-~ga~lIN~aRG~~vd-e~aL~~aL~  287 (328)
                      | +..++.++     ..++ ++.++|+++-|--.+ .+.+.+.+.
T Consensus        89 k-~~~~~~v~-----~~l~~~~~~vv~~~nGi~~~~~~~l~~~~~  127 (335)
T 1z82_A           89 P-VQYIREHL-----LRLPVKPSMVLNLSKGIEIKTGKRVSEIVE  127 (335)
T ss_dssp             C-GGGHHHHH-----TTCSSCCSEEEECCCCCCTTTCCCHHHHHH
T ss_pred             C-HHHHHHHH-----HHhCcCCCEEEEEeCCCCCCccCcHHHHHH
Confidence            9 45555544     3333 789999998763322 234444444

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.05  E-value=7e-06  Score=75.38  Aligned_cols=120  Identities=18%  Similarity=0.191  Sum_probs=72.8

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCC-CCccccccCCHHHHhh---cCCEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLR---EADVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ell~---~aDiV~  241 (328)
                      .+|+|||.|.||..+|..|+ ..|.+|.+||+++... +...+. +......+. ..... ...+.+++.+   .+|+|+
T Consensus         4 m~i~iiG~G~~G~~~a~~l~-~~g~~V~~~~r~~~~~-~~~~~~-g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vi   79 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLH-QGGNDVTLIDQWPAHI-EAIRKN-GLIADFNGEEVVANL-PIFSPEEIDHQNEQVDLII   79 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHHH-CEEEEETTEEEEECC-CEECGGGCCTTSCCCSEEE
T ss_pred             CeEEEECcCHHHHHHHHHHH-hCCCcEEEEECCHHHH-HHHHhC-CEEEEeCCCeeEecc-eeecchhhcccCCCCCEEE
Confidence            47999999999999999984 6689999999976432 211110 000000000 00000 0113334444   899999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      +++| +..+..++ +.....+++++++|+++-|- -..+.+.+.+.+.++.
T Consensus        80 ~~v~-~~~~~~v~-~~l~~~l~~~~~iv~~~~g~-~~~~~l~~~~~~~~vi  127 (316)
T 2ew2_A           80 ALTK-AQQLDAMF-KAIQPMITEKTYVLCLLNGL-GHEDVLEKYVPKENIL  127 (316)
T ss_dssp             ECSC-HHHHHHHH-HHHGGGCCTTCEEEECCSSS-CTHHHHTTTSCGGGEE
T ss_pred             EEec-cccHHHHH-HHHHHhcCCCCEEEEecCCC-CcHHHHHHHcCCccEE
Confidence            9999 34555555 44556688999999998653 2346666666554443

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.01  E-value=3.9e-06  Score=69.56  Aligned_cols=103  Identities=11%  Similarity=0.163  Sum_probs=74.4

Q ss_pred             CCEEEEEec----CHHHHHHHHHHHhcCCcEEEEEcCCc--hhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          165 GQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       165 g~tvgIiG~----G~IG~~vA~~l~~~fg~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      -++++|||.    |++|..+++.| ...|.+|+.+||..  ..                   -.+...+.+++|+....|
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L-~~~G~~v~~vnp~~~g~~-------------------i~G~~~~~sl~el~~~~D   72 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYL-LDQGYHVIPVSPKVAGKT-------------------LLGQQGYATLADVPEKVD   72 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHH-HHHTCCEEEECSSSTTSE-------------------ETTEECCSSTTTCSSCCS
T ss_pred             CCEEEEECcCCCCCChHHHHHHHH-HHCCCEEEEeCCcccccc-------------------cCCeeccCCHHHcCCCCC
Confidence            567999999    89999999997 56788888888865  21                   012233467888888999


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEE
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ga  294 (328)
                      ++++++| .+....++. +..+ ...++++++.+  ..  ++++.+++++..+.-.
T Consensus        73 lvii~vp-~~~v~~v~~-~~~~-~g~~~i~i~~~--~~--~~~l~~~a~~~Gi~~i  121 (145)
T 2duw_A           73 MVDVFRN-SEAAWGVAQ-EAIA-IGAKTLWLQLG--VI--NEQAAVLAREAGLSVV  121 (145)
T ss_dssp             EEECCSC-STHHHHHHH-HHHH-HTCCEEECCTT--CC--CHHHHHHHHTTTCEEE
T ss_pred             EEEEEeC-HHHHHHHHH-HHHH-cCCCEEEEcCC--hH--HHHHHHHHHHcCCEEE
Confidence            9999999 466677664 3444 56677777763  22  6778888887655533

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.99  E-value=2.9e-05  Score=74.10  Aligned_cols=113  Identities=15%  Similarity=0.220  Sum_probs=81.2

Q ss_pred             ccccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCC----chhH---HHHHHhhhhhhhhcCCCCCccccccCCHH
Q 020301          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY----QATR---LEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (328)
                      |..+.+.++.|+|.|..|..+|+.+ .+.|. +|+.+|++    ....   +..+...|.+   +..  .  .....+|+
T Consensus       187 g~~l~~~kVVv~GAGaAG~~iAkll-~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~---~~~--~--~~~~~~L~  258 (388)
T 1vl6_A          187 EKKIEEVKVVVNGIGAAGYNIVKFL-LDLGVKNVVAVDRKGILNENDPETCLNEYHLEIAR---ITN--P--ERLSGDLE  258 (388)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHH-HHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHH---TSC--T--TCCCSCHH
T ss_pred             CCCCCCcEEEEECCCHHHHHHHHHH-HhCCCCeEEEEECCCcccCCCcccccCHHHHHHHH---hhh--c--cCchhhHH
Confidence            3468899999999999999999997 58899 89999997    3221   2222222321   111  1  12346899


Q ss_pred             HHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHH
Q 020301          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEH  285 (328)
Q Consensus       232 ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~a  285 (328)
                      |.++.+|+++-+-     +.++|.++.++.|+++++++.+|+-.. +..++.+++
T Consensus       259 eav~~ADVlIG~S-----ap~l~t~emVk~Ma~~pIIfalSNPt~E~~p~~a~~~  308 (388)
T 1vl6_A          259 TALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPVPEIDPELAREA  308 (388)
T ss_dssp             HHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSSCHHHHHHT
T ss_pred             HHHccCCEEEEeC-----CCCccCHHHHHhcCCCCEEEEcCCCCCCCCHHHHHHh
Confidence            9999999997662     149999999999999999999998543 344444444

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=97.98  E-value=9.6e-06  Score=77.70  Aligned_cols=83  Identities=28%  Similarity=0.440  Sum_probs=69.2

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCc---EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      ...+|.|||. |+.|+..++.+ +++|+   .|..+|.+....               |.         .++ .+.++|+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a-~~lGa~~~~V~v~D~~~~~~---------------g~---------~~~-~i~~aDi  266 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLL-HKVGIPDANILKWDIKETSR---------------GG---------PFD-EIPQADI  266 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHH-HHTTCCGGGEEEECHHHHTT---------------CS---------CCT-HHHHSSE
T ss_pred             CCCeEEEEcCCCHHHHHHHHHH-HhCCCCcCceEEeecccccc---------------CC---------chh-hHhhCCE
Confidence            4568999999 99999999995 89998   899999764210               11         123 4679999


Q ss_pred             EEEcCCCChhhhccccHHHHhcC-CCCcEEEEcC
Q 020301          240 ISLHPVLDKTTYHLINKERLATM-KKEAILVNCS  272 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~m-k~ga~lIN~a  272 (328)
                      |+.++......-.+|.++.++.| |||+++|++|
T Consensus       267 vIn~vlig~~aP~Lvt~e~v~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          267 FINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVS  300 (394)
T ss_dssp             EEECCCCCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred             EEECcCcCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence            99999997778899999999999 9999999996

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.96  E-value=5.8e-05  Score=62.48  Aligned_cols=104  Identities=17%  Similarity=0.190  Sum_probs=63.0

Q ss_pred             cccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh-cCCCCCccccccCC---HHHH-
Q 020301          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQPVTWKRASS---MDEV-  233 (328)
Q Consensus       159 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---l~el-  233 (328)
                      ++....++++.|+|+|.+|+.+|+.| +..|.+|+++|+++... +.        ++ ..+.... .....+   +.+. 
T Consensus        13 ~~~~~~~~~v~IiG~G~iG~~la~~L-~~~g~~V~vid~~~~~~-~~--------~~~~~g~~~~-~~d~~~~~~l~~~~   81 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGCGRLGSLIANLA-SSSGHSVVVVDKNEYAF-HR--------LNSEFSGFTV-VGDAAEFETLKECG   81 (155)
T ss_dssp             ----CCCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCGGGG-GG--------SCTTCCSEEE-ESCTTSHHHHHTTT
T ss_pred             hhcccCCCcEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HH--------HHhcCCCcEE-EecCCCHHHHHHcC
Confidence            34567889999999999999999997 67899999999986432 11        11 1121111 001122   3333 


Q ss_pred             hhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       234 l~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      +..+|+|++++|.. ++.. .-....+.+.+...+|-..++.
T Consensus        82 ~~~ad~Vi~~~~~~-~~~~-~~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           82 MEKADMVFAFTNDD-STNF-FISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             GGGCSEEEECSSCH-HHHH-HHHHHHHHTSCCSEEEEECSSG
T ss_pred             cccCCEEEEEeCCc-HHHH-HHHHHHHHHCCCCeEEEEECCH
Confidence            67899999999943 3222 2233445555666676666655

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=97.94  E-value=2.4e-05  Score=75.54  Aligned_cols=99  Identities=20%  Similarity=0.267  Sum_probs=70.7

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh--HHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      -|.||||+|||||+-|.+=|..| +--|.+|++--|....  ....+     ..++++|.      .+.+.+|+.++||+
T Consensus        34 ~lkgK~IaVIGyGsQG~AqAlNL-RDSGv~V~Vglr~~s~~e~~~S~-----~~A~~~Gf------~v~~~~eA~~~ADv  101 (491)
T 3ulk_A           34 YLQGKKVVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASW-----RKATENGF------KVGTYEELIPQADL  101 (491)
T ss_dssp             GGTTSEEEEESCSHHHHHHHHHH-HHTTCEEEEEECHHHHHTTCHHH-----HHHHHTTC------EEEEHHHHGGGCSE
T ss_pred             HHcCCEEEEeCCChHhHHHHhHH-HhcCCcEEEEeCCCCcccccchH-----HHHHHCCC------EecCHHHHHHhCCE
Confidence            48999999999999999999997 6789998876542110  00000     11223332      23588999999999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      |.+.+|...+ ..++ ++....||+|+.|. .|.|-
T Consensus       102 V~~L~PD~~q-~~vy-~~I~p~lk~G~~L~-faHGF  134 (491)
T 3ulk_A          102 VINLTPDKQH-SDVV-RTVQPLMKDGAALG-YSHGF  134 (491)
T ss_dssp             EEECSCGGGH-HHHH-HHHGGGSCTTCEEE-ESSCH
T ss_pred             EEEeCChhhH-HHHH-HHHHhhCCCCCEEE-ecCcc
Confidence            9999995433 3445 56999999999887 67775

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.89  E-value=3.3e-06  Score=77.08  Aligned_cols=87  Identities=14%  Similarity=0.208  Sum_probs=54.5

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEE-EEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      .+|||||+|.||+.+|+.|+ .. .+| .+||+++... ++..+.+       +.      ...++++++++||+|++++
T Consensus         3 m~I~iIG~G~mG~~la~~l~-~~-~~v~~v~~~~~~~~-~~~~~~~-------g~------~~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLK-DR-YEIGYILSRSIDRA-RNLAEVY-------GG------KAATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC------CCCEECSSHHHH-HHHHHHT-------CC------CCCSSCCCCC---CEEECS
T ss_pred             ceEEEEeCCHHHHHHHHHHH-Hc-CcEEEEEeCCHHHH-HHHHHHc-------CC------ccCCHHHHHhcCCEEEEeC
Confidence            36999999999999999874 44 788 4899986532 2211111       11      2346777888999999999


Q ss_pred             CCChhhhccccHHHHhcC-CCCcEEEEcCCC
Q 020301          245 VLDKTTYHLINKERLATM-KKEAILVNCSRG  274 (328)
Q Consensus       245 plt~~t~~li~~~~~~~m-k~ga~lIN~aRG  274 (328)
                      |... .     .+.+..+ +++.++||++-+
T Consensus        67 ~~~~-~-----~~v~~~l~~~~~ivi~~s~~   91 (276)
T 2i76_A           67 PDRY-I-----KTVANHLNLGDAVLVHCSGF   91 (276)
T ss_dssp             CTTT-H-----HHHHTTTCCSSCCEEECCSS
T ss_pred             ChHH-H-----HHHHHHhccCCCEEEECCCC
Confidence            9432 2     3444444 689999999854

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.89  E-value=4.5e-05  Score=69.63  Aligned_cols=107  Identities=16%  Similarity=0.038  Sum_probs=74.4

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      |+++.|+|.|.+|+.++..| ...|.+|.+++|+..+. ++.. .+       +.   ..   .+++++ .++|+|+.+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L-~~~G~~v~V~nRt~~ka-~~la-~~-------~~---~~---~~~~~l-~~~DiVInaT  180 (269)
T 3phh_A          118 YQNALILGAGGSAKALACEL-KKQGLQVSVLNRSSRGL-DFFQ-RL-------GC---DC---FMEPPK-SAFDLIINAT  180 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCTTH-HHHH-HH-------TC---EE---ESSCCS-SCCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHH-HC-------CC---eE---ecHHHh-ccCCEEEEcc
Confidence            88999999999999999997 57889999999997542 2211 11       11   11   123333 3899999999


Q ss_pred             CCChhhhccccHHHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301          245 VLDKTTYHLINKERLA-TMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (328)
Q Consensus       245 plt~~t~~li~~~~~~-~mk~ga~lIN~aRG~~vde~aL~~aL~~g~  290 (328)
                      |........++.+.+. .++++.+++++.-.+  .+.-|.+|-+.|.
T Consensus       181 p~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~P--~T~ll~~A~~~G~  225 (269)
T 3phh_A          181 SASLHNELPLNKEVLKGYFKEGKLAYDLAYGF--LTPFLSLAKELKT  225 (269)
T ss_dssp             TTCCCCSCSSCHHHHHHHHHHCSEEEESCCSS--CCHHHHHHHHTTC
T ss_pred             cCCCCCCCCCChHHHHhhCCCCCEEEEeCCCC--chHHHHHHHHCcC
Confidence            9764433346666433 577899999999876  6665555555553

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=97.88  E-value=6.2e-05  Score=70.34  Aligned_cols=132  Identities=12%  Similarity=0.113  Sum_probs=88.3

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHH-hhhhhhhhcCCCC----Cc-----cccccCCHHH
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFV-TAYGQFLKANGEQ----PV-----TWKRASSMDE  232 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~-~~~~~~~~~~~~~----~~-----~~~~~~~l~e  232 (328)
                      -.+|+|||.|.||+.+|..++ ..|++|+.||+++.....  +.+ ..+.. ....+..    ..     .....+++++
T Consensus         6 ~~~VaViGaG~MG~giA~~~a-~~G~~V~l~D~~~~~l~~~~~~i~~~l~~-~~~~g~~~~~~~~~~~l~~i~~~~~l~~   83 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFA-SGGFRVKLYDIEPRQITGALENIRKEMKS-LQQSGSLKGSLSAEEQLSLISSCTNLAE   83 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHH-HTTCCEEEECSCHHHHHHHHHHHHHHHHH-HHHTTCCCSSSCHHHHHHTEEEECCHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHH-hCCCeEEEEECCHHHHHHHHHHHHHHHHH-HHHcCCCCCccCHHHHHhhcccccchHh
Confidence            468999999999999999975 779999999998753211  111 11111 1122211    00     1223568999


Q ss_pred             HhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCC
Q 020301          233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (328)
Q Consensus       233 ll~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~  301 (328)
                      .++.||+|+=++|-+-+.+.-+-++.=+.++++++|-..+.+  +....|.++++. .=.-.++=.|.+
T Consensus        84 a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~~-p~r~ig~HffNP  149 (319)
T 3ado_A           84 AVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLAH-VKQCIVAHPVNP  149 (319)
T ss_dssp             HTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCTT-GGGEEEEEECSS
T ss_pred             HhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhccC-CCcEEEecCCCC
Confidence            999999999999988888777767777778999988655554  556777777654 333445444433

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.88  E-value=7.8e-05  Score=69.68  Aligned_cols=93  Identities=15%  Similarity=0.222  Sum_probs=66.1

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      ..++++|||.|.+|+.+++.+++.++ -+|.+|||++.. .+++.+.++.    .+   .... +.++++++ ++|+|++
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~-a~~la~~~~~----~~---~~~~-~~~~~e~v-~aDvVi~  193 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKA-AKKFVSYCED----RG---ISAS-VQPAEEAS-RCDVLVT  193 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHH-HHHHHHHHHH----TT---CCEE-ECCHHHHT-SSSEEEE
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHH-HHHHHHHHHh----cC---ceEE-ECCHHHHh-CCCEEEE
Confidence            45789999999999999998754344 579999998753 2333333321    11   1123 57899999 9999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      |.|..   ..++..   +.+++|..+++++
T Consensus       194 aTp~~---~pv~~~---~~l~~G~~V~~ig  217 (322)
T 1omo_A          194 TTPSR---KPVVKA---EWVEEGTHINAIG  217 (322)
T ss_dssp             CCCCS---SCCBCG---GGCCTTCEEEECS
T ss_pred             eeCCC---CceecH---HHcCCCeEEEECC
Confidence            99953   355543   4678999999995

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.87  E-value=6.8e-05  Score=60.05  Aligned_cols=95  Identities=12%  Similarity=0.186  Sum_probs=57.6

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH----hhcCCEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI  240 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV  240 (328)
                      +++++|+|+|.+|+.+|+.| ...|.+|.++|+++... +.....+       +.... .....+.+.+    +.++|+|
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L-~~~g~~v~~~d~~~~~~-~~~~~~~-------~~~~~-~~d~~~~~~l~~~~~~~~d~v   73 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSL-SEKGHDIVLIDIDKDIC-KKASAEI-------DALVI-NGDCTKIKTLEDAGIEDADMY   73 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHC-------SSEEE-ESCTTSHHHHHHTTTTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHhc-------CcEEE-EcCCCCHHHHHHcCcccCCEE
Confidence            46899999999999999997 56799999999976432 2111111       11100 0011233222    6789999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~  271 (328)
                      ++++|....+  ..-....+.++++.+++-+
T Consensus        74 i~~~~~~~~~--~~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           74 IAVTGKEEVN--LMSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             EECCSCHHHH--HHHHHHHHHTTCCCEEEEC
T ss_pred             EEeeCCchHH--HHHHHHHHHcCCCEEEEEe
Confidence            9999853222  2223445567777666544

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.86  E-value=1.8e-05  Score=72.89  Aligned_cols=117  Identities=14%  Similarity=0.107  Sum_probs=69.1

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcC-----C-cEEEEEcCCchhHHHHHHhhhhhhhhc-CCC-CCccccccCCHHHHhhcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGF-----K-MNLIYYDLYQATRLEKFVTAYGQFLKA-NGE-QPVTWKRASSMDEVLREA  237 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~f-----g-~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~ell~~a  237 (328)
                      .+|+|||.|.||..+|..|+ .-     | .+|.+|+| . ...+...+..+..... .+. .........+ .+.+..+
T Consensus         9 m~I~iiG~G~mG~~~a~~L~-~~~~~~~g~~~V~~~~r-~-~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~   84 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLA-LRAAATDGLLEVSWIAR-G-AHLEAIRAAGGLRVVTPSRDFLARPTCVTDN-PAEVGTV   84 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHH-HHHHHTTSSEEEEEECC-H-HHHHHHHHHTSEEEECSSCEEEECCSEEESC-HHHHCCE
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCccccCCCCCEEEEEc-H-HHHHHHHhcCCeEEEeCCCCeEEecceEecC-ccccCCC
Confidence            47999999999999999985 44     7 89999998 3 2222221101111000 000 0000001123 3457899


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCH-HHHHHHHHcCC
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE-VALVEHLKQNP  290 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde-~aL~~aL~~g~  290 (328)
                      |+|++++|.. .+..++ +.....++++.++|.+.-|  ++. +.|.+.+.+.+
T Consensus        85 D~vil~vk~~-~~~~v~-~~i~~~l~~~~~iv~~~nG--~~~~~~l~~~l~~~~  134 (317)
T 2qyt_A           85 DYILFCTKDY-DMERGV-AEIRPMIGQNTKILPLLNG--ADIAERMRTYLPDTV  134 (317)
T ss_dssp             EEEEECCSSS-CHHHHH-HHHGGGEEEEEEEEECSCS--SSHHHHHTTTSCTTT
T ss_pred             CEEEEecCcc-cHHHHH-HHHHhhcCCCCEEEEccCC--CCcHHHHHHHCCCCc
Confidence            9999999954 445444 3344556788999998776  343 55666664433

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=97.84  E-value=1.2e-05  Score=71.76  Aligned_cols=69  Identities=10%  Similarity=0.149  Sum_probs=54.9

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      .+|||||+|.||.++|+.| +..|.+|.+||+.                                ++ ++.||  ++++|
T Consensus         7 mkI~IIG~G~~G~sLA~~L-~~~G~~V~~~~~~--------------------------------~~-~~~aD--ilavP   50 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKL-DSVGHYVTVLHAP--------------------------------ED-IRDFE--LVVID   50 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHH-HHTTCEEEECSSG--------------------------------GG-GGGCS--EEEEC
T ss_pred             cEEEEEeeCHHHHHHHHHH-HHCCCEEEEecCH--------------------------------HH-hccCC--EEEEc
Confidence            5899999999999999998 5679999998762                                12 57799  88888


Q ss_pred             CChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          246 LDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       246 lt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .. ....++ ++....+++|+++++++
T Consensus        51 ~~-ai~~vl-~~l~~~l~~g~ivvd~s   75 (232)
T 3dfu_A           51 AH-GVEGYV-EKLSAFARRGQMFLHTS   75 (232)
T ss_dssp             SS-CHHHHH-HHHHTTCCTTCEEEECC
T ss_pred             HH-HHHHHH-HHHHHhcCCCCEEEEEC
Confidence            54 556655 45666789999999985

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.81  E-value=3.7e-05  Score=62.67  Aligned_cols=95  Identities=14%  Similarity=0.187  Sum_probs=60.5

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH---HHH-hhcCCEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEV-LREADVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~el-l~~aDiV~  241 (328)
                      .++.|+|+|.+|+.+|+.| +..|.+|+++|+++... +.        ++..+.... .....+.   +++ +.++|+|+
T Consensus         8 ~~viIiG~G~~G~~la~~L-~~~g~~v~vid~~~~~~-~~--------~~~~g~~~i-~gd~~~~~~l~~a~i~~ad~vi   76 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKL-LASDIPLVVIETSRTRV-DE--------LRERGVRAV-LGNAANEEIMQLAHLECAKWLI   76 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHH-HHTTCCEEEEESCHHHH-HH--------HHHTTCEEE-ESCTTSHHHHHHTTGGGCSEEE
T ss_pred             CCEEEECcCHHHHHHHHHH-HHCCCCEEEEECCHHHH-HH--------HHHcCCCEE-ECCCCCHHHHHhcCcccCCEEE
Confidence            4699999999999999997 68899999999987542 11        111222111 0111222   222 57899999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      +++|...++..++  ..++.+.++..+|-.++
T Consensus        77 ~~~~~~~~n~~~~--~~a~~~~~~~~iiar~~  106 (140)
T 3fwz_A           77 LTIPNGYEAGEIV--ASARAKNPDIEIIARAH  106 (140)
T ss_dssp             ECCSCHHHHHHHH--HHHHHHCSSSEEEEEES
T ss_pred             EECCChHHHHHHH--HHHHHHCCCCeEEEEEC
Confidence            9999655554433  34556666766665433

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.79  E-value=7.2e-05  Score=69.58  Aligned_cols=120  Identities=16%  Similarity=0.130  Sum_probs=75.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhc--CCCCCc-cccccCCHHHHhhcCCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA--NGEQPV-TWKRASSMDEVLREADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~l~ell~~aDiV~l  242 (328)
                      .+|+|||.|.||..+|..|+ .-|.+|.+|+|+......+    .+-....  .+.... ......+++++.+.+|+|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~-~~g~~V~~~~r~~~~~i~~----~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVil   77 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLA-KTGHCVSVVSRSDYETVKA----KGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLL   77 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHH-HTTCEEEEECSTTHHHHHH----HCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCChHHHHHh----CCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEE
Confidence            57999999999999999984 5689999999975321111    1100000  111000 01122467777678999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccE
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g  293 (328)
                      ++|.. ++...+ +..-..+++++++|.+.-| +-.++.|.+.+...++.+
T Consensus        78 avK~~-~~~~~l-~~l~~~l~~~t~Iv~~~nG-i~~~~~l~~~~~~~~vl~  125 (320)
T 3i83_A           78 CIKVV-EGADRV-GLLRDAVAPDTGIVLISNG-IDIEPEVAAAFPDNEVIS  125 (320)
T ss_dssp             CCCCC-TTCCHH-HHHTTSCCTTCEEEEECSS-SSCSHHHHHHSTTSCEEE
T ss_pred             ecCCC-ChHHHH-HHHHhhcCCCCEEEEeCCC-CChHHHHHHHCCCCcEEE
Confidence            99953 444443 3444567889999988776 333567777776555443

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.79  E-value=2.6e-05  Score=73.01  Aligned_cols=122  Identities=12%  Similarity=0.124  Sum_probs=75.4

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCC-CCCccccccCCHHHHhhcCCEEEEc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .++|+|||.|.||..+|..|+ ..|.+|.+|+|..  ..+.. .+.+......+ ..........++++ ++.+|+|+++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~-~~g~~V~~~~r~~--~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vila   77 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLA-LAGEAINVLARGA--TLQAL-QTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVA   77 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHH-HTTCCEEEECCHH--HHHHH-HHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HCCCEEEEEEChH--HHHHH-HHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEe
Confidence            357999999999999999984 6689999999852  22221 11111000000 00011112246776 5899999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCCCc------------------ccCHHHHHHHHHcCCccE
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP------------------VIDEVALVEHLKQNPMFR  293 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~------------------~vde~aL~~aL~~g~i~g  293 (328)
                      +|. .+++.++ +..-..+++++++|.+.-|=                  +=.++.|.+.+...++.+
T Consensus        78 vk~-~~~~~~~-~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~  143 (335)
T 3ghy_A           78 VKA-PALESVA-AGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLG  143 (335)
T ss_dssp             CCH-HHHHHHH-GGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEE
T ss_pred             CCc-hhHHHHH-HHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEE
Confidence            994 5555544 33344567899999998882                  223456777775555443

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.70  E-value=0.00015  Score=66.89  Aligned_cols=108  Identities=20%  Similarity=0.288  Sum_probs=66.6

Q ss_pred             CCEEEEEecCHHHHH-HHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          165 GQTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       165 g~tvgIiG~G~IG~~-vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      -.++||||+|.||+. .++.+.+.-++++. ++|+++.. .++..+.|       +.     ..+.++++++++.|+|++
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~a~~~-------~~-----~~~~~~~~ll~~~D~V~i   72 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVK-REKICSDY-------RI-----MPFDSIESLAKKCDCIFL   72 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHH-HHHHHHHH-------TC-----CBCSCHHHHHTTCSEEEE
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHH-HHHHHHHc-------CC-----CCcCCHHHHHhcCCEEEE
Confidence            358999999999996 88876433578877 68988653 22222222       21     125799999999999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCc-EEEE-cCCCcccCHHHHHHHHHcCC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEA-ILVN-CSRGPVIDEVALVEHLKQNP  290 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga-~lIN-~aRG~~vde~aL~~aL~~g~  290 (328)
                      ++|..  +..-+-...+   +.|. +++. ..--.+-+.+.|.++.++..
T Consensus        73 ~tp~~--~h~~~~~~al---~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g  117 (308)
T 3uuw_A           73 HSSTE--THYEIIKILL---NLGVHVYVDKPLASTVSQGEELIELSTKKN  117 (308)
T ss_dssp             CCCGG--GHHHHHHHHH---HTTCEEEECSSSSSSHHHHHHHHHHHHHHT
T ss_pred             eCCcH--hHHHHHHHHH---HCCCcEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence            99933  2221222333   3343 4443 22233345566777766643

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.68  E-value=0.00015  Score=58.22  Aligned_cols=100  Identities=12%  Similarity=0.168  Sum_probs=59.7

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH---HHH-hhcCC
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEV-LREAD  238 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~el-l~~aD  238 (328)
                      +.++++.|+|+|.+|+.+++.| ...|.+|+++|++.... +.        +...+.... .....+.   +++ +.++|
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l-~~~g~~v~~~d~~~~~~-~~--------~~~~~~~~~-~~d~~~~~~l~~~~~~~~d   72 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKEL-HRMGHEVLAVDINEEKV-NA--------YASYATHAV-IANATEENELLSLGIRNFE   72 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHH-HHTTCCCEEEESCHHHH-HT--------TTTTCSEEE-ECCTTCHHHHHTTTGGGCS
T ss_pred             CcCCcEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH--------HHHhCCEEE-EeCCCCHHHHHhcCCCCCC
Confidence            5678899999999999999997 57899999999875431 11        111121101 0111233   333 67899


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      +|++++|...++. +.-....+.+.+. .+|-.+.+.
T Consensus        73 ~vi~~~~~~~~~~-~~~~~~~~~~~~~-~ii~~~~~~  107 (144)
T 2hmt_A           73 YVIVAIGANIQAS-TLTTLLLKELDIP-NIWVKAQNY  107 (144)
T ss_dssp             EEEECCCSCHHHH-HHHHHHHHHTTCS-EEEEECCSH
T ss_pred             EEEECCCCchHHH-HHHHHHHHHcCCC-eEEEEeCCH
Confidence            9999998642322 2223444556666 555555443

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.67  E-value=8.2e-05  Score=68.31  Aligned_cols=114  Identities=18%  Similarity=0.144  Sum_probs=74.6

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      .++.|+++.|+|.|.+|+.++..| ...|+ +|.+++|+... .++..+.+..    .+  ..   ...+++++.+++|+
T Consensus       122 ~~l~~k~vlvlGaGg~g~aia~~L-~~~G~~~v~v~~R~~~~-a~~la~~~~~----~~--~~---~~~~~~~l~~~aDi  190 (281)
T 3o8q_A          122 VLLKGATILLIGAGGAARGVLKPL-LDQQPASITVTNRTFAK-AEQLAELVAA----YG--EV---KAQAFEQLKQSYDV  190 (281)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HTTCCSEEEEEESSHHH-HHHHHHHHGG----GS--CE---EEEEGGGCCSCEEE
T ss_pred             CCccCCEEEEECchHHHHHHHHHH-HhcCCCeEEEEECCHHH-HHHHHHHhhc----cC--Ce---eEeeHHHhcCCCCE
Confidence            357899999999999999999997 57896 99999998753 2222222211    01  01   12245565588999


Q ss_pred             EEEcCCCChhhh-ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          240 ISLHPVLDKTTY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       240 V~l~~plt~~t~-~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      |+.+.|...... -.+..   +.++++++++++.-.+ ..+.-|.+|-+.|
T Consensus       191 IInaTp~gm~~~~~~l~~---~~l~~~~~V~DlvY~P-~~T~ll~~A~~~G  237 (281)
T 3o8q_A          191 IINSTSASLDGELPAIDP---VIFSSRSVCYDMMYGK-GYTVFNQWARQHG  237 (281)
T ss_dssp             EEECSCCCC----CSCCG---GGEEEEEEEEESCCCS-SCCHHHHHHHHTT
T ss_pred             EEEcCcCCCCCCCCCCCH---HHhCcCCEEEEecCCC-ccCHHHHHHHHCC
Confidence            999999764322 13443   3467899999997654 4455444454445

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.65  E-value=0.00011  Score=68.35  Aligned_cols=117  Identities=18%  Similarity=0.263  Sum_probs=69.8

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCC-CCCccccccCCHHHHhhcCCEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      ...++|+|||.|.||..+|..|+ .-|.+|..| ++... .+...+ .+......+ ..........++++ ++.+|+|+
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~-~~G~~V~l~-~~~~~-~~~i~~-~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi   91 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLA-RAGHEVILI-ARPQH-VQAIEA-TGLRLETQSFDEQVKVSASSDPSA-VQGADLVL   91 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHH-HTTCEEEEE-CCHHH-HHHHHH-HCEEEECSSCEEEECCEEESCGGG-GTTCSEEE
T ss_pred             ccCCcEEEECcCHHHHHHHHHHH-HCCCeEEEE-EcHhH-HHHHHh-CCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEE
Confidence            45678999999999999999984 668999999 65432 222111 110000000 00111111245555 58999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~  287 (328)
                      +++|.. +++.++ +..-..+++++++|.+.-|= -.++.|.+.+.
T Consensus        92 lavk~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi-~~~~~l~~~~~  134 (318)
T 3hwr_A           92 FCVKST-DTQSAA-LAMKPALAKSALVLSLQNGV-ENADTLRSLLE  134 (318)
T ss_dssp             ECCCGG-GHHHHH-HHHTTTSCTTCEEEEECSSS-SHHHHHHHHCC
T ss_pred             EEcccc-cHHHHH-HHHHHhcCCCCEEEEeCCCC-CcHHHHHHHcC
Confidence            999953 555544 34445678899999987772 22355666653

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.64  E-value=0.00038  Score=63.24  Aligned_cols=113  Identities=15%  Similarity=0.106  Sum_probs=71.5

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-hcCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV  240 (328)
                      ++.|+++.|+|.|.+|+.+|+.| ...|.+|++++|+... .++..+.++.    .+  ..   ...+++++. .++|+|
T Consensus       116 ~l~~k~vlViGaGg~g~a~a~~L-~~~G~~V~v~~R~~~~-~~~la~~~~~----~~--~~---~~~~~~~~~~~~~Div  184 (271)
T 1nyt_A          116 IRPGLRILLIGAGGASRGVLLPL-LSLDCAVTITNRTVSR-AEELAKLFAH----TG--SI---QALSMDELEGHEFDLI  184 (271)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHH-HHHHHHHTGG----GS--SE---EECCSGGGTTCCCSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHcCCEEEEEECCHHH-HHHHHHHhhc----cC--Ce---eEecHHHhccCCCCEE
Confidence            46789999999999999999997 5788999999998643 2222222211    01  00   112334443 589999


Q ss_pred             EEcCCCChhhh-ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          241 SLHPVLDKTTY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       241 ~l~~plt~~t~-~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      +.+.|...... .-+..+   .++++.+++|+.-.+ ....-+..|-+.|
T Consensus       185 Vn~t~~~~~~~~~~i~~~---~l~~~~~v~D~~y~p-~~t~~~~~a~~~G  230 (271)
T 1nyt_A          185 INATSSGISGDIPAIPSS---LIHPGIYCYDMFYQK-GKTPFLAWCEQRG  230 (271)
T ss_dssp             EECCSCGGGTCCCCCCGG---GCCTTCEEEESCCCS-SCCHHHHHHHHTT
T ss_pred             EECCCCCCCCCCCCCCHH---HcCCCCEEEEeccCC-cCCHHHHHHHHcC
Confidence            99999654311 013333   357899999998764 3334444444444

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.63  E-value=0.00019  Score=66.50  Aligned_cols=119  Identities=13%  Similarity=0.180  Sum_probs=74.3

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhc-CCCCCc-cccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPV-TWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~ell~~aDiV~l~  243 (328)
                      ++++|||.|.||..+|..|+ .-|.+|.+|+|+..   +. ....+..... .+.... ......+.++ +..+|+|+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~-~~g~~V~~~~r~~~---~~-i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vila   76 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQ-RSGEDVHFLLRRDY---EA-IAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVG   76 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHH-HTSCCEEEECSTTH---HH-HHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHH-HCCCeEEEEEcCcH---HH-HHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEe
Confidence            47999999999999999984 56899999999752   21 1111111110 011000 0111245555 6899999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCCCcccC-HHHHHHHHHcCCccEE
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVID-EVALVEHLKQNPMFRV  294 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vd-e~aL~~aL~~g~i~ga  294 (328)
                      +|. .+++..+ +..-..+++++++|.+.-|  ++ ++.|.+.+.+.++.++
T Consensus        77 vk~-~~~~~~l-~~l~~~l~~~~~iv~l~nG--i~~~~~l~~~~~~~~v~~~  124 (312)
T 3hn2_A           77 LKT-FANSRYE-ELIRPLVEEGTQILTLQNG--LGNEEALATLFGAERIIGG  124 (312)
T ss_dssp             CCG-GGGGGHH-HHHGGGCCTTCEEEECCSS--SSHHHHHHHHTCGGGEEEE
T ss_pred             cCC-CCcHHHH-HHHHhhcCCCCEEEEecCC--CCcHHHHHHHCCCCcEEEE
Confidence            994 3444433 3444567889999998877  43 5677777765555544

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.63  E-value=0.00012  Score=66.72  Aligned_cols=115  Identities=15%  Similarity=0.107  Sum_probs=72.2

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-cCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV  240 (328)
                      ++.|+++.|+|.|.+|+.+|..| ...|.+|.+++|+..+ .++..+.++.    .+  ..   ...+++++.+ ++|+|
T Consensus       116 ~~~~~~vlvlGaGg~g~a~a~~L-~~~G~~v~v~~R~~~~-a~~l~~~~~~----~~--~~---~~~~~~~~~~~~~Div  184 (272)
T 1p77_A          116 LRPNQHVLILGAGGATKGVLLPL-LQAQQNIVLANRTFSK-TKELAERFQP----YG--NI---QAVSMDSIPLQTYDLV  184 (272)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHH-HHTTCEEEEEESSHHH-HHHHHHHHGG----GS--CE---EEEEGGGCCCSCCSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHH-HHHHHHHccc----cC--Ce---EEeeHHHhccCCCCEE
Confidence            57789999999999999999997 4778999999998643 2222222211    00  01   1123444433 89999


Q ss_pred             EEcCCCChhhhc-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301          241 SLHPVLDKTTYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (328)
Q Consensus       241 ~l~~plt~~t~~-li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~  290 (328)
                      +.+.|......- -+..+.+   +++.+++++.-.+..+..-+.+|-+.|.
T Consensus       185 In~t~~~~~~~~~~i~~~~l---~~~~~v~D~~y~p~~~t~ll~~a~~~G~  232 (272)
T 1p77_A          185 INATSAGLSGGTASVDAEIL---KLGSAFYDMQYAKGTDTPFIALCKSLGL  232 (272)
T ss_dssp             EECCCC-------CCCHHHH---HHCSCEEESCCCTTSCCHHHHHHHHTTC
T ss_pred             EECCCCCCCCCCCCCCHHHc---CCCCEEEEeeCCCCcCCHHHHHHHHcCC
Confidence            999996543210 1344433   5788999998866554565555555553

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.61  E-value=0.00016  Score=69.20  Aligned_cols=103  Identities=14%  Similarity=0.058  Sum_probs=62.0

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEc---CCchhHHHHHHhhhhhhhh--cC-C--CC-Ccccc-ccCCHHHHhh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD---LYQATRLEKFVTAYGQFLK--AN-G--EQ-PVTWK-RASSMDEVLR  235 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d---~~~~~~~~~~~~~~~~~~~--~~-~--~~-~~~~~-~~~~l~ell~  235 (328)
                      .+|+|||.|.||..+|..|++.-|.+|.+|+   ++... .+......+....  .. +  .. ..... ...++++.++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   81 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAER-WTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS   81 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHH-HHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHH-HHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhC
Confidence            3799999999999999997422489999999   54321 1111110000000  00 1  00 00011 2357888899


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~  271 (328)
                      .||+|++++|. ..++.++ ++.-..+++++++|..
T Consensus        82 ~aD~Vilav~~-~~~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           82 GADVVILTVPA-FAHEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             TCSEEEECSCG-GGHHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCCEEEEeCch-HHHHHHH-HHHHhhCCCCcEEEEc
Confidence            99999999994 3444433 3344557789999985

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.58  E-value=7.7e-05  Score=57.88  Aligned_cols=94  Identities=17%  Similarity=0.135  Sum_probs=58.4

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcc--ccccCCHHHHhhcCCEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLREADVI  240 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~aDiV  240 (328)
                      .+++++|+|.|.||+.+++.| ...| .+|+++|+++... +..        ...+.....  .....+++++++++|+|
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l-~~~g~~~v~~~~r~~~~~-~~~--------~~~~~~~~~~d~~~~~~~~~~~~~~d~v   73 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALL-KTSSNYSVTVADHDLAAL-AVL--------NRMGVATKQVDAKDEAGLAKALGGFDAV   73 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHH-HHCSSEEEEEEESCHHHH-HHH--------HTTTCEEEECCTTCHHHHHHHTTTCSEE
T ss_pred             CcCeEEEECCCHHHHHHHHHH-HhCCCceEEEEeCCHHHH-HHH--------HhCCCcEEEecCCCHHHHHHHHcCCCEE
Confidence            467899999999999999997 5778 8999999986532 111        111111110  11113466788899999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      +.+.|... +..++ +..   .+.|...++.+
T Consensus        74 i~~~~~~~-~~~~~-~~~---~~~g~~~~~~~  100 (118)
T 3ic5_A           74 ISAAPFFL-TPIIA-KAA---KAAGAHYFDLT  100 (118)
T ss_dssp             EECSCGGG-HHHHH-HHH---HHTTCEEECCC
T ss_pred             EECCCchh-hHHHH-HHH---HHhCCCEEEec
Confidence            99998322 22211 111   24566677764

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.57  E-value=0.00099  Score=61.09  Aligned_cols=120  Identities=18%  Similarity=0.190  Sum_probs=77.8

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ++.|+++.|+|.|.+|+.++..| ...|+ +|.+++|+.... ++..+.+....   ...........++++.++++|+|
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L-~~~G~~~v~i~~R~~~~a-~~la~~~~~~~---~~~~i~~~~~~~l~~~l~~~DiV  198 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYAL-VTHGVQKLQVADLDTSRA-QALADVINNAV---GREAVVGVDARGIEDVIAAADGV  198 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSSHHHH-HHHHHHHHHHH---TSCCEEEECSTTHHHHHHHSSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEECCHHHH-HHHHHHHHhhc---CCceEEEcCHHHHHHHHhcCCEE
Confidence            57899999999999999999997 57898 799999987532 22222221100   00011111234788999999999


Q ss_pred             EEcCCCChhhh--ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301          241 SLHPVLDKTTY--HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (328)
Q Consensus       241 ~l~~plt~~t~--~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~  290 (328)
                      +.+.|..-...  -.+.   .+.++++.+++++.=.+ ..+.-|.+|-+.|.
T Consensus       199 InaTp~Gm~~~~~~pi~---~~~l~~~~~v~DlvY~P-~~T~ll~~A~~~G~  246 (283)
T 3jyo_A          199 VNATPMGMPAHPGTAFD---VSCLTKDHWVGDVVYMP-IETELLKAARALGC  246 (283)
T ss_dssp             EECSSTTSTTSCSCSSC---GGGCCTTCEEEECCCSS-SSCHHHHHHHHHTC
T ss_pred             EECCCCCCCCCCCCCCC---HHHhCCCCEEEEecCCC-CCCHHHHHHHHCcC
Confidence            99999643211  1233   34567889999986544 34555556666563

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.56  E-value=0.00014  Score=58.94  Aligned_cols=93  Identities=15%  Similarity=0.150  Sum_probs=55.7

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH----hhcCCE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADV  239 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDi  239 (328)
                      .++++.|+|+|.+|+.+|+.| ...|.+|+++|+++... +..        ...+.... .....+.+.+    +.++|+
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L-~~~g~~V~~id~~~~~~-~~~--------~~~~~~~~-~gd~~~~~~l~~~~~~~~d~   73 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVREL-TAAGKKVLAVDKSKEKI-ELL--------EDEGFDAV-IADPTDESFYRSLDLEGVSA   73 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHH-HHTTCCEEEEESCHHHH-HHH--------HHTTCEEE-ECCTTCHHHHHHSCCTTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHH--------HHCCCcEE-ECCCCCHHHHHhCCcccCCE
Confidence            457899999999999999997 57899999999986532 111        11121111 0112232222    468999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEE
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILV  269 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lI  269 (328)
                      |+++.| +.+ .++.-....+.+....+++
T Consensus        74 vi~~~~-~~~-~n~~~~~~a~~~~~~~iia  101 (141)
T 3llv_A           74 VLITGS-DDE-FNLKILKALRSVSDVYAIV  101 (141)
T ss_dssp             EEECCS-CHH-HHHHHHHHHHHHCCCCEEE
T ss_pred             EEEecC-CHH-HHHHHHHHHHHhCCceEEE
Confidence            999999 333 3333344445555333443

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.54  E-value=0.00013  Score=69.73  Aligned_cols=112  Identities=13%  Similarity=0.175  Sum_probs=78.7

Q ss_pred             ccccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCc-----h-hHHHHHHhhhhhhhhcCCCCCccccccCCHHH
Q 020301          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ-----A-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  232 (328)
                      |..+...+|.|+|.|..|..+|+.+ .++|. +|+.+|+.-     . ..+..+...|...   ..    ......+|+|
T Consensus       183 g~~l~d~kVVi~GAGaAG~~iA~ll-~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~---~~----~~~~~~~L~e  254 (398)
T 2a9f_A          183 KKSLDEVSIVVNGGGSAGLSITRKL-LAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKV---TN----REFKSGTLED  254 (398)
T ss_dssp             TCCTTSCEEEEECCSHHHHHHHHHH-HHHTCCEEEEEETTEECCTTCCCSCCC---CHHHH---HS----CTTCCCSCSH
T ss_pred             CCCCCccEEEEECCCHHHHHHHHHH-HHcCCCeEEEEECCCcccCCccccchHHHHHHhhc---cC----cccchhhHHH
Confidence            4578889999999999999999997 68899 999999873     0 1111111222111   00    0112357999


Q ss_pred             HhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 020301          233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (328)
Q Consensus       233 ll~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~  284 (328)
                      .++.+|+++=.     .+.+++.++.++.|+++++++..|+-.. +..++.++
T Consensus       255 av~~ADV~IG~-----Sapgl~T~EmVk~Ma~~pIIfalsNPt~E~~pe~a~~  302 (398)
T 2a9f_A          255 ALEGADIFIGV-----SAPGVLKAEWISKMAARPVIFAMANPIPEIYPDEALE  302 (398)
T ss_dssp             HHHTTCSEEEC-----CSTTCCCHHHHHTSCSSCEEEECCSSSCSSCHHHHHT
T ss_pred             HhccCCEEEec-----CCCCCCCHHHHHhhCCCCEEEECCCCCccCCHHHHHH
Confidence            99999998655     2369999999999999999999998653 33333333

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.52  E-value=0.00019  Score=59.06  Aligned_cols=102  Identities=8%  Similarity=0.009  Sum_probs=60.6

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccc--cccCCHHHH-hhcCCEEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW--KRASSMDEV-LREADVIS  241 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~el-l~~aDiV~  241 (328)
                      .+++.|+|+|.+|+.+++.| ...|.+|.+.|+++....+.....+     ..+......  .....++++ +.++|.|+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L-~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQL-NQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHH-HHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CCcEEEECCCHHHHHHHHHH-HHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence            46799999999999999997 5789999999997432211111100     111111100  011234454 78999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      ++++..+  .++.-....+.+.+...+|...+.
T Consensus        77 ~~~~~d~--~n~~~~~~a~~~~~~~~ii~~~~~  107 (153)
T 1id1_A           77 ALSDNDA--DNAFVVLSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             ECSSCHH--HHHHHHHHHHHHTSSSCEEEECSS
T ss_pred             EecCChH--HHHHHHHHHHHHCCCCEEEEEECC
Confidence            9998433  333334555566555555554444

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.52  E-value=0.00053  Score=62.54  Aligned_cols=113  Identities=13%  Similarity=0.036  Sum_probs=73.6

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-hcCC
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READ  238 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aD  238 (328)
                      .++.|+++.|+|.|.+|+.++..| ...|+ +|.+++|+..+ .++..+.+.    . +  ..   ...+++++- .++|
T Consensus       116 ~~l~~k~~lvlGaGg~~~aia~~L-~~~G~~~v~i~~R~~~~-a~~la~~~~----~-~--~~---~~~~~~~l~~~~~D  183 (272)
T 3pwz_A          116 EPLRNRRVLLLGAGGAVRGALLPF-LQAGPSELVIANRDMAK-ALALRNELD----H-S--RL---RISRYEALEGQSFD  183 (272)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHTCCSEEEEECSCHHH-HHHHHHHHC----C-T--TE---EEECSGGGTTCCCS
T ss_pred             CCccCCEEEEECccHHHHHHHHHH-HHcCCCEEEEEeCCHHH-HHHHHHHhc----c-C--Ce---eEeeHHHhcccCCC
Confidence            358899999999999999999997 57896 99999998753 233222221    0 0  11   112334433 7899


Q ss_pred             EEEEcCCCChhhh-ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          239 VISLHPVLDKTTY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       239 iV~l~~plt~~t~-~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      +|+.+.|..-... -.+..   +.++++.+++++.=.+ ..+.-|.+|-+.|
T Consensus       184 ivInaTp~gm~~~~~~i~~---~~l~~~~~V~DlvY~P-~~T~ll~~A~~~G  231 (272)
T 3pwz_A          184 IVVNATSASLTADLPPLPA---DVLGEAALAYELAYGK-GLTPFLRLAREQG  231 (272)
T ss_dssp             EEEECSSGGGGTCCCCCCG---GGGTTCSEEEESSCSC-CSCHHHHHHHHHS
T ss_pred             EEEECCCCCCCCCCCCCCH---HHhCcCCEEEEeecCC-CCCHHHHHHHHCC
Confidence            9999999643221 12443   3467899999997654 3455555555555

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.49  E-value=0.0012  Score=61.42  Aligned_cols=122  Identities=12%  Similarity=0.096  Sum_probs=75.6

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCc--hhHHHHHHhhhhhhhhcCCCCCccccccCC---HHHHh
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVL  234 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell  234 (328)
                      .++.||++.|+|.|.+|+.+|..| ...|+ +|.+++|+.  ..+.++..+.+..   ..+ .........+   +.+.+
T Consensus       150 ~~l~gk~~lVlGaGG~g~aia~~L-~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~---~~~-~~~~~~~~~~~~~l~~~l  224 (315)
T 3tnl_A          150 HDIIGKKMTICGAGGAATAICIQA-ALDGVKEISIFNRKDDFYANAEKTVEKINS---KTD-CKAQLFDIEDHEQLRKEI  224 (315)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHTTCSEEEEEECSSTTHHHHHHHHHHHHH---HSS-CEEEEEETTCHHHHHHHH
T ss_pred             CCccCCEEEEECCChHHHHHHHHH-HHCCCCEEEEEECCCchHHHHHHHHHHhhh---hcC-CceEEeccchHHHHHhhh
Confidence            368899999999999999999997 57898 899999983  1222332222211   011 0111112223   55678


Q ss_pred             hcCCEEEEcCCCChhh---hccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301          235 READVISLHPVLDKTT---YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (328)
Q Consensus       235 ~~aDiV~l~~plt~~t---~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~  290 (328)
                      .++|+|+.+.|..-..   ...+.  ....++++.+++++.=.+ ..+.-|.+|-+.|.
T Consensus       225 ~~aDiIINaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~P-~~T~ll~~A~~~G~  280 (315)
T 3tnl_A          225 AESVIFTNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYKP-TKTRLLEIAEEQGC  280 (315)
T ss_dssp             HTCSEEEECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCSS-SSCHHHHHHHHTTC
T ss_pred             cCCCEEEECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccCC-CCCHHHHHHHHCCC
Confidence            8999999999954221   11121  234467899999986544 34555555555553

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.48  E-value=0.00046  Score=63.57  Aligned_cols=167  Identities=19%  Similarity=0.176  Sum_probs=103.8

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCccEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccChh
Q 020301           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (328)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~d~li~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~id~~  103 (328)
                      .-++.|.+.+.+..++ ..+++|+.+.+.     +..++++++.+  ..++++ +++...-.  |       -+|.+-..
T Consensus        77 ~c~~vGi~s~~~~lp~-~~se~ell~~I~~LN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~--K-------DVDG~hp~  146 (303)
T 4b4u_A           77 ACRRVGMDSLKIELPQ-ETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAISLA--K-------DVDGVTCL  146 (303)
T ss_dssp             HHHHTTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGG--G-------CTTCCCHH
T ss_pred             HHHHcCCeEEEEecCc-cCCHHHHHHHHHHhcCCCCccEEEEeCCCccccChHHHHhccCcc--c-------ccCccCcc
Confidence            3456788776655433 357888876653     25789999853  345554 44443221  1       22222111


Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH-HHHHHHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~-IG~~vA~  182 (328)
                      ..   |-...+.++. ...++.- +..+|   ++                     .+.++.||++.|||-+. +|+.+|.
T Consensus       147 N~---G~L~~g~~~~-~PcTp~g-v~~lL---~~---------------------~~i~l~Gk~vvViGRS~iVGkPla~  197 (303)
T 4b4u_A          147 GF---GRMAMGEAAY-GSATPAG-IMTIL---KE---------------------NNIEIAGKHAVVVGRSAILGKPMAM  197 (303)
T ss_dssp             HH---HHHHTTCCCC-CCHHHHH-HHHHH---HH---------------------TTCCCTTCEEEEECCCTTTHHHHHH
T ss_pred             hH---HHhcCCCCcc-cCccHHH-HHHHH---HH---------------------HCCCCCCCEEEEEeccccccchHHH
Confidence            11   1112233332 2333322 22222   11                     23579999999999887 4999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcC
Q 020301          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (328)
Q Consensus       183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~m  262 (328)
                      +| ..-|+.|..+....                            .+|.+..++||+|+.++.-    .++|..+.   .
T Consensus       198 LL-~~~~ATVTi~Hs~T----------------------------~dl~~~~~~ADIvV~A~G~----p~~i~~d~---v  241 (303)
T 4b4u_A          198 ML-LQANATVTICHSRT----------------------------QNLPELVKQADIIVGAVGK----AELIQKDW---I  241 (303)
T ss_dssp             HH-HHTTCEEEEECTTC----------------------------SSHHHHHHTCSEEEECSCS----TTCBCGGG---S
T ss_pred             HH-HhcCCEEEEecCCC----------------------------CCHHHHhhcCCeEEeccCC----CCcccccc---c
Confidence            97 57799999875421                            4789999999999999763    45777765   5


Q ss_pred             CCCcEEEEcCC
Q 020301          263 KKEAILVNCSR  273 (328)
Q Consensus       263 k~ga~lIN~aR  273 (328)
                      |+|+++||++-
T Consensus       242 k~GavVIDVGi  252 (303)
T 4b4u_A          242 KQGAVVVDAGF  252 (303)
T ss_dssp             CTTCEEEECCC
T ss_pred             cCCCEEEEece
Confidence            89999999974

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.46  E-value=0.00042  Score=64.26  Aligned_cols=123  Identities=16%  Similarity=0.203  Sum_probs=68.9

Q ss_pred             EEEEEecCHHHHHHHHHHHhc-CCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~-fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      +|+|||.|.+|..+|..|++. +|.+|..||+..... +.....+........ .........++++ ++.||+|++++|
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~-~~~~~~l~~~~~~~~-~~~~i~~t~d~~~-l~~aDvViiav~   78 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIP-QGKALDMYESGPVGL-FDTKVTGSNDYAD-TANSDIVIITAG   78 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHH-HHHHHHHHTTHHHHT-CCCEEEEESCGGG-GTTCSEEEECCS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHH-HHHHHhHHhhhhccc-CCcEEEECCCHHH-HCCCCEEEEeCC
Confidence            799999999999999987643 689999999986432 221100000000000 1111222256777 899999999998


Q ss_pred             CChhhhcc-------cc----HH---HHhcCCCCcEEEEcCCCcccCHH--HHHHH--HHcCCccEEE
Q 020301          246 LDKTTYHL-------IN----KE---RLATMKKEAILVNCSRGPVIDEV--ALVEH--LKQNPMFRVG  295 (328)
Q Consensus       246 lt~~t~~l-------i~----~~---~~~~mk~ga~lIN~aRG~~vde~--aL~~a--L~~g~i~gaa  295 (328)
                      . +...+.       .|    ++   .+....|++++|+++-  .+|.-  .+.+.  +...++.|.+
T Consensus        79 ~-p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN--P~~~~~~~~~~~~~~~~~rviG~g  143 (310)
T 1guz_A           79 L-PRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN--PLDIMTHVAWVRSGLPKERVIGMA  143 (310)
T ss_dssp             C-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS--SHHHHHHHHHHHHCSCGGGEEEEC
T ss_pred             C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC--chHHHHHHHHHhcCCChHHEEECC
Confidence            4 332222       11    11   2222357889999844  34432  22222  3334566653

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.42  E-value=0.00058  Score=63.12  Aligned_cols=109  Identities=15%  Similarity=0.184  Sum_probs=67.2

Q ss_pred             CEEEEEecCHHHHH-HHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG~G~IG~~-vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .++||||+|.||+. +++.+.+.-++++. ++|+++... ++..+.|       +.     ..+.+++++...+|+|+++
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~-~~~~~~~-------g~-----~~~~~~~~l~~~~D~V~i~   72 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKA-LPICESW-------RI-----PYADSLSSLAASCDAVFVH   72 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTH-HHHHHHH-------TC-----CBCSSHHHHHTTCSEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHH-HHHHHHc-------CC-----CccCcHHHhhcCCCEEEEe
Confidence            47999999999997 88876433478876 889886542 2222222       21     1346778776789999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCcc
Q 020301          244 PVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga-~lIN~-aRG~~vde~aL~~aL~~g~i~  292 (328)
                      +|.....     +-....++.|. +++.- .--.+-+.+.|.++.++..+.
T Consensus        73 tp~~~h~-----~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~  118 (319)
T 1tlt_A           73 SSTASHF-----DVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT  118 (319)
T ss_dssp             SCTTHHH-----HHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             CCchhHH-----HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence            9943221     22223344565 55542 222334556788887775544

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.40  E-value=0.00048  Score=56.42  Aligned_cols=104  Identities=13%  Similarity=0.136  Sum_probs=69.6

Q ss_pred             CCCEEEEEec----CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          164 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       164 ~g~tvgIiG~----G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      +-++++|||.    |++|..+++.| +..|++|+..+|.....                 .-.+...+.+++|+-...|+
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l-~~~G~~v~~vnp~~~~~-----------------~i~G~~~~~sl~el~~~vDl   73 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYL-REQGYRVLPVNPRFQGE-----------------ELFGEEAVASLLDLKEPVDI   73 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHH-HHTTCEEEEECGGGTTS-----------------EETTEECBSSGGGCCSCCSE
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHH-HHCCCEEEEeCCCcccC-----------------cCCCEEecCCHHHCCCCCCE
Confidence            3568999999    89999999997 67888876666542010                 00122335688998889999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      +++++|. +....++. +..+. ..++++++.+-   . ++.+.+..++..+.
T Consensus        74 avi~vp~-~~~~~v~~-~~~~~-gi~~i~~~~g~---~-~~~~~~~a~~~Gir  119 (140)
T 1iuk_A           74 LDVFRPP-SALMDHLP-EVLAL-RPGLVWLQSGI---R-HPEFEKALKEAGIP  119 (140)
T ss_dssp             EEECSCH-HHHTTTHH-HHHHH-CCSCEEECTTC---C-CHHHHHHHHHTTCC
T ss_pred             EEEEeCH-HHHHHHHH-HHHHc-CCCEEEEcCCc---C-HHHHHHHHHHcCCE
Confidence            9999995 56666663 44443 33456665432   2 57777777776554

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.39  E-value=0.00033  Score=68.12  Aligned_cols=117  Identities=19%  Similarity=0.188  Sum_probs=80.1

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc---EEEEEc----CC--chh--H---HHHHHhhhhhhhhcCCCCCccccc
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYD----LY--QAT--R---LEKFVTAYGQFLKANGEQPVTWKR  226 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~---~V~~~d----~~--~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~  226 (328)
                      ..+.++++.|+|.|..|+.+++.| ...|+   +|+++|    |+  ...  .   ...+...|.   ....   . ...
T Consensus       182 ~~l~~~rvlvlGAGgAg~aia~~L-~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a---~~~~---~-~~~  253 (439)
T 2dvm_A          182 KKISEITLALFGAGAAGFATLRIL-TEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLL---KKTN---G-ENI  253 (439)
T ss_dssp             CCTTTCCEEEECCSHHHHHHHHHH-HHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHH---TTSC---T-TCC
T ss_pred             CCccCCEEEEECccHHHHHHHHHH-HHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHh---hccc---c-ccc
Confidence            467899999999999999999997 57898   799999    76  211  1   111101110   0000   0 001


Q ss_pred             cCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301          227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (328)
Q Consensus       227 ~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~  290 (328)
                      ..++.+.++++|+|+.+.|..+   +++.++.++.|+++.++++.+..  ..|.-+.+|.+.|.
T Consensus       254 ~~~L~e~l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLynP--~~t~~~~~A~~~G~  312 (439)
T 2dvm_A          254 EGGPQEALKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLANP--VPEILPEEAKKAGA  312 (439)
T ss_dssp             CSSHHHHHTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCSS--SCSSCHHHHHHHTC
T ss_pred             cccHHHHhccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCCC--CCcchHHHHHHcCC
Confidence            3578999999999999988422   56667788999999999999543  35555666666664

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.39  E-value=0.00025  Score=65.52  Aligned_cols=105  Identities=18%  Similarity=0.161  Sum_probs=63.6

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (328)
                      .++||||+|.||+..++.+.+.-+.++. ++|+++... ++    +    ..   .   ...+.+++++++  ++|+|++
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~-~~----~----~~---~---~~~~~~~~~~l~~~~~D~V~i   75 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNL-AL----V----PP---G---CVIESDWRSVVSAPEVEAVII   75 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHH-TT----C----CT---T---CEEESSTHHHHTCTTCCEEEE
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHH-HH----H----Hh---h---CcccCCHHHHhhCCCCCEEEE
Confidence            4799999999999999987433367754 889876431 10    0    00   0   123568999996  7999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNP  290 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga-~lIN~-aRG~~vde~aL~~aL~~g~  290 (328)
                      ++|.  ....   +-....++.|. +++.- .--.+-+.+.|.++.++..
T Consensus        76 ~tp~--~~h~---~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g  120 (315)
T 3c1a_A           76 ATPP--ATHA---EITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATG  120 (315)
T ss_dssp             ESCG--GGHH---HHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHC
T ss_pred             eCCh--HHHH---HHHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcC
Confidence            9993  3222   22223345564 55552 1122334456777666543

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.37  E-value=0.00088  Score=62.23  Aligned_cols=68  Identities=26%  Similarity=0.472  Sum_probs=49.8

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (328)
                      .++||||+|.||+..++.+.+.-++++. ++|+++... ++..+.|       +     .. +.+++++++  +.|+|++
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~~~~~-------~-----~~-~~~~~~~l~~~~~D~V~i   69 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAA-EAIAGAY-------G-----CE-VRTIDAIEAAADIDAVVI   69 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHHT-------T-----CE-ECCHHHHHHCTTCCEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHH-HHHHHHh-------C-----CC-cCCHHHHhcCCCCCEEEE
Confidence            4799999999999999987433488877 689876532 2222222       2     12 579999998  8999999


Q ss_pred             cCCCC
Q 020301          243 HPVLD  247 (328)
Q Consensus       243 ~~plt  247 (328)
                      ++|..
T Consensus        70 ~tp~~   74 (331)
T 4hkt_A           70 CTPTD   74 (331)
T ss_dssp             CSCGG
T ss_pred             eCCch
Confidence            99943

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.37  E-value=0.00081  Score=62.98  Aligned_cols=105  Identities=14%  Similarity=0.228  Sum_probs=62.8

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      .+|+|||.|.+|..+|..|+ .-|. +|..||+..... +.............. .+.......++++.++.||+|++++
T Consensus        10 ~kI~VIGaG~vG~~lA~~la-~~g~~~V~L~D~~~~~~-~~~~~~l~~~~~~~~-~~~~i~~t~d~~ea~~~aDiVi~a~   86 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCA-LRELADVVLYDVVKGMP-EGKALDLSHVTSVVD-TNVSVRAEYSYEAALTGADCVIVTA   86 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSSSHH-HHHHHHHHHHHHHTT-CCCCEEEECSHHHHHTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCeEEEEECChhHH-HHHHHHHHhhhhccC-CCCEEEEeCCHHHHhCCCCEEEEcc
Confidence            58999999999999999975 4465 899999986432 221111111111111 1112222368888899999999999


Q ss_pred             --CCChhh------hcc-c------cHH---HHhcCCCCcEEEEcCC
Q 020301          245 --VLDKTT------YHL-I------NKE---RLATMKKEAILVNCSR  273 (328)
Q Consensus       245 --plt~~t------~~l-i------~~~---~~~~mk~ga~lIN~aR  273 (328)
                        |..+.-      +-- +      -++   .+....|++++||.+-
T Consensus        87 g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN  133 (331)
T 1pzg_A           87 GLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN  133 (331)
T ss_dssp             SCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence              654421      111 0      111   2233358999999854

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.35  E-value=0.00047  Score=64.01  Aligned_cols=117  Identities=10%  Similarity=0.158  Sum_probs=67.8

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .++|+|||.|.||..+|..++ .-|. +|..||++.... +.............. .........++ +.++.||+|+++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la-~~g~~~V~l~D~~~~~~-~~~~~~l~~~~~~~~-~~~~i~~t~d~-~a~~~aDiVi~a   79 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVG-KDNLADVVLFDIAEGIP-QGKALDITHSMVMFG-STSKVIGTDDY-ADISGSDVVIIT   79 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSSSHH-HHHHHHHHHHHHHHT-CCCCEEEESCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCceEEEEeCCchHH-HHHHHHHHhhhhhcC-CCcEEEECCCH-HHhCCCCEEEEe
Confidence            368999999999999999975 4466 899999986432 211000000000000 01111222466 678999999999


Q ss_pred             CCCCh-----------hhhccccHH---HHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 020301          244 PVLDK-----------TTYHLINKE---RLATMKKEAILVNCSRGPVIDEVALVEHL  286 (328)
Q Consensus       244 ~plt~-----------~t~~li~~~---~~~~mk~ga~lIN~aRG~~vde~aL~~aL  286 (328)
                      ++...           ++..++ ++   .+....|++++|+++-..-+....+.++.
T Consensus        80 vg~p~~~g~~r~d~~~~~~~i~-~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~~  135 (317)
T 2ewd_A           80 ASIPGRPKDDRSELLFGNARIL-DSVAEGVKKYCPNAFVICITNPLDVMVSHFQKVS  135 (317)
T ss_dssp             CCCSSCCSSCGGGGHHHHHHHH-HHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHhhHHHH-HHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHhh
Confidence            94211           111111 11   22223579999999876555555666654

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.34  E-value=0.0011  Score=61.93  Aligned_cols=69  Identities=25%  Similarity=0.363  Sum_probs=50.2

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (328)
                      .++||||+|.||+..++.+.+.-++++. ++|+++... ++..+.|       +     ...+.+++++++  +.|+|++
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~-------g-----~~~~~~~~~~l~~~~~D~V~i   71 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGA-QRLAEAN-------G-----AEAVASPDEVFARDDIDGIVI   71 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHTT-------T-----CEEESSHHHHTTCSCCCEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHH-HHHHHHc-------C-----CceeCCHHHHhcCCCCCEEEE
Confidence            4799999999999999987543478877 688876432 2222221       1     224579999999  8999999


Q ss_pred             cCCCC
Q 020301          243 HPVLD  247 (328)
Q Consensus       243 ~~plt  247 (328)
                      ++|..
T Consensus        72 ~tp~~   76 (344)
T 3euw_A           72 GSPTS   76 (344)
T ss_dssp             CSCGG
T ss_pred             eCCch
Confidence            99943

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.34  E-value=0.00053  Score=60.76  Aligned_cols=97  Identities=21%  Similarity=0.205  Sum_probs=63.1

Q ss_pred             ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      ..++.|+++.|||.|.+|...++.| ...|++|+++++...+..++..+.        +...... .... ++.+..+|+
T Consensus        26 fl~L~gk~VLVVGgG~va~~ka~~L-l~~GA~VtVvap~~~~~l~~l~~~--------~~i~~i~-~~~~-~~dL~~adL   94 (223)
T 3dfz_A           26 MLDLKGRSVLVVGGGTIATRRIKGF-LQEGAAITVVAPTVSAEINEWEAK--------GQLRVKR-KKVG-EEDLLNVFF   94 (223)
T ss_dssp             EECCTTCCEEEECCSHHHHHHHHHH-GGGCCCEEEECSSCCHHHHHHHHT--------TSCEEEC-SCCC-GGGSSSCSE
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEECCCCCHHHHHHHHc--------CCcEEEE-CCCC-HhHhCCCCE
Confidence            4579999999999999999999997 578999999999876554433221        1111111 1112 345788999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      |+.+.. .++    +|.......+ -.++||++.
T Consensus        95 VIaAT~-d~~----~N~~I~~~ak-~gi~VNvvD  122 (223)
T 3dfz_A           95 IVVATN-DQA----VNKFVKQHIK-NDQLVNMAS  122 (223)
T ss_dssp             EEECCC-CTH----HHHHHHHHSC-TTCEEEC--
T ss_pred             EEECCC-CHH----HHHHHHHHHh-CCCEEEEeC
Confidence            987754 333    3444444455 557788754

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.31  E-value=0.00089  Score=62.41  Aligned_cols=69  Identities=20%  Similarity=0.244  Sum_probs=48.2

Q ss_pred             CEEEEEecCHHHHHHHHHHH-hcCCcEE-EEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMV-EGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~-~~fg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  241 (328)
                      .++||||+|.||+..++.++ +.-++++ .++|+++... +...+.|       +..    ..+.+++++++  .+|+|+
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~-~~~a~~~-------g~~----~~~~~~~~~l~~~~~D~V~   76 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQL-EWAKNEL-------GVE----TTYTNYKDMIDTENIDAIF   76 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHH-HHHHHTT-------CCS----EEESCHHHHHTTSCCSEEE
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHH-HHHHHHh-------CCC----cccCCHHHHhcCCCCCEEE
Confidence            47999999999999999874 3358885 4689876432 2221211       211    23468999997  699999


Q ss_pred             EcCCC
Q 020301          242 LHPVL  246 (328)
Q Consensus       242 l~~pl  246 (328)
                      +++|.
T Consensus        77 i~tp~   81 (346)
T 3cea_A           77 IVAPT   81 (346)
T ss_dssp             ECSCG
T ss_pred             EeCCh
Confidence            99993

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.30  E-value=0.00067  Score=62.24  Aligned_cols=108  Identities=14%  Similarity=0.101  Sum_probs=70.2

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ++.|+++.|+|.|.+|+.++..| ...|+ +|.+++|+..+. ++..+.         .   ......++++ + ++|+|
T Consensus       119 ~~~~k~vlvlGaGGaaraia~~L-~~~G~~~v~v~nRt~~ka-~~La~~---------~---~~~~~~~l~~-l-~~Div  182 (282)
T 3fbt_A          119 EIKNNICVVLGSGGAARAVLQYL-KDNFAKDIYVVTRNPEKT-SEIYGE---------F---KVISYDELSN-L-KGDVI  182 (282)
T ss_dssp             CCTTSEEEEECSSTTHHHHHHHH-HHTTCSEEEEEESCHHHH-HHHCTT---------S---EEEEHHHHTT-C-CCSEE
T ss_pred             CccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHh---------c---CcccHHHHHh-c-cCCEE
Confidence            57899999999999999999997 57898 999999987542 221111         0   1111223444 4 89999


Q ss_pred             EEcCCCC--hhhh-ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          241 SLHPVLD--KTTY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       241 ~l~~plt--~~t~-~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      +.+.|..  +++. -.+..+.|   +++.+++++.=.+ ..+.=|.+|-+.|
T Consensus       183 InaTp~Gm~~~~~~~pi~~~~l---~~~~~v~DlvY~P-~~T~ll~~A~~~G  230 (282)
T 3fbt_A          183 INCTPKGMYPKEGESPVDKEVV---AKFSSAVDLIYNP-VETLFLKYARESG  230 (282)
T ss_dssp             EECSSTTSTTSTTCCSSCHHHH---TTCSEEEESCCSS-SSCHHHHHHHHTT
T ss_pred             EECCccCccCCCccCCCCHHHc---CCCCEEEEEeeCC-CCCHHHHHHHHCc
Confidence            9999963  2211 12555544   6788999986443 2344444555555

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.30  E-value=0.001  Score=62.50  Aligned_cols=69  Identities=26%  Similarity=0.394  Sum_probs=50.2

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcC-CcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh--hcCCEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL--READVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~f-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--~~aDiV~  241 (328)
                      .++||||+|.||+..++.+ +.. ++++. ++|+++... ++..+.|       +.     ..+.++++++  .+.|+|+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l-~~~~~~~lvav~d~~~~~~-~~~~~~~-------g~-----~~~~~~~~~l~~~~~D~V~   71 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAY-TKSEKLKLVTCYSRTEDKR-EKFGKRY-------NC-----AGDATMEALLAREDVEMVI   71 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TTCSSEEEEEEECSSHHHH-HHHHHHH-------TC-----CCCSSHHHHHHCSSCCEEE
T ss_pred             ceEEEEccCHHHHHHHHHH-HhCCCcEEEEEECCCHHHH-HHHHHHc-------CC-----CCcCCHHHHhcCCCCCEEE
Confidence            4799999999999999987 455 88866 779876532 2222222       21     2357999999  5699999


Q ss_pred             EcCCCCh
Q 020301          242 LHPVLDK  248 (328)
Q Consensus       242 l~~plt~  248 (328)
                      +++|...
T Consensus        72 i~tp~~~   78 (354)
T 3db2_A           72 ITVPNDK   78 (354)
T ss_dssp             ECSCTTS
T ss_pred             EeCChHH
Confidence            9999543

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.29  E-value=0.00085  Score=61.99  Aligned_cols=76  Identities=17%  Similarity=0.236  Sum_probs=47.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      ++|+|||.|.||..+|..|+ .-|  .+|..||++... .+.....+.......+ ..... ...++ +.++.||+|+++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~-~~g~~~~V~l~d~~~~~-~~~~~~~l~~~~~~~~-~~~~~-~~~d~-~~~~~aDvViia   76 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLI-AQGVADDYVFIDANEAK-VKADQIDFQDAMANLE-AHGNI-VINDW-AALADADVVIST   76 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSSHHH-HHHHHHHHHHHGGGSS-SCCEE-EESCG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEcCCHHH-HHHHHHHHHhhhhhcC-CCeEE-EeCCH-HHhCCCCEEEEe
Confidence            47999999999999999875 346  699999998643 2222111110000000 01111 12466 678999999999


Q ss_pred             CCC
Q 020301          244 PVL  246 (328)
Q Consensus       244 ~pl  246 (328)
                      +|.
T Consensus        77 v~~   79 (309)
T 1hyh_A           77 LGN   79 (309)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            995

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.28  E-value=0.00062  Score=55.99  Aligned_cols=101  Identities=9%  Similarity=0.105  Sum_probs=69.1

Q ss_pred             CCEEEEEec----CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          165 GQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       165 g~tvgIiG~----G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      -++++|||.    |++|..+++.| +..|.+|+..+|....                 .  .+...+.+++|+....|++
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l-~~~G~~v~~Vnp~~~~-----------------i--~G~~~y~sl~~l~~~vDlv   81 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYL-LEHGYDVYPVNPKYEE-----------------V--LGRKCYPSVLDIPDKIEVV   81 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSE-----------------E--TTEECBSSGGGCSSCCSEE
T ss_pred             CCEEEEEccCCCCCchHHHHHHHH-HHCCCEEEEECCCCCe-----------------E--CCeeccCCHHHcCCCCCEE
Confidence            678999999    79999999997 5788887766664311                 0  1223356889988899999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      ++++|. +....++ ++..+. ..++++++.  |.  .++.+.++.++..+.
T Consensus        82 vi~vp~-~~~~~vv-~~~~~~-gi~~i~~~~--g~--~~~~l~~~a~~~Gi~  126 (144)
T 2d59_A           82 DLFVKP-KLTMEYV-EQAIKK-GAKVVWFQY--NT--YNREASKKADEAGLI  126 (144)
T ss_dssp             EECSCH-HHHHHHH-HHHHHH-TCSEEEECT--TC--CCHHHHHHHHHTTCE
T ss_pred             EEEeCH-HHHHHHH-HHHHHc-CCCEEEECC--Cc--hHHHHHHHHHHcCCE
Confidence            999994 5555655 344443 334566553  32  367778887776555

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.28  E-value=0.0012  Score=64.38  Aligned_cols=146  Identities=14%  Similarity=0.097  Sum_probs=82.9

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHh-----------hhhhhhhcCCCCCccccccCCHHH
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT-----------AYGQFLKANGEQPVTWKRASSMDE  232 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~e  232 (328)
                      +-++|+|||+|-+|..+|..++ ..|.+|+++|.++..- +....           +.-+.....|    .....++.++
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A-~~G~~V~g~Did~~kV-~~ln~G~~pi~Epgl~ell~~~~~~g----~l~~tt~~~~   93 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFA-LLGHRVVGYDVNPSIV-ERLRAGRPHIYEPGLEEALGRALSSG----RLSFAESAEE   93 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HHTCEEEEECSCHHHH-HHHHTTCCSSCCTTHHHHHHHHHHTT----CEEECSSHHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHH-hCCCcEEEEECCHHHH-HHHHCCCCCCCCCCHHHHHHHHHHcC----CeeEEcCHHH
Confidence            4568999999999999999985 5799999999986531 11100           0000000001    1122457889


Q ss_pred             HhhcCCEEEEcCCCChhhh-c------ccc--HHHHhcCC---CCcEEEEcCCCcccCHHHHH-HHHHcCCccEEEEe-C
Q 020301          233 VLREADVISLHPVLDKTTY-H------LIN--KERLATMK---KEAILVNCSRGPVIDEVALV-EHLKQNPMFRVGLD-V  298 (328)
Q Consensus       233 ll~~aDiV~l~~plt~~t~-~------li~--~~~~~~mk---~ga~lIN~aRG~~vde~aL~-~aL~~g~i~gaalD-V  298 (328)
                      .++.||++++|+| ||... +      +..  +..-+.|+   +|.++|.-|.-.+=-.+.+. ..|++.. .+.-++ +
T Consensus        94 ai~~ad~~~I~Vp-TP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~-~~~~f~v~  171 (444)
T 3vtf_A           94 AVAATDATFIAVG-TPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEA-GGVKFSVA  171 (444)
T ss_dssp             HHHTSSEEEECCC-CCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTT-TTCCCEEE
T ss_pred             HHhcCCceEEEec-CCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhC-CCCCceee
Confidence            9999999999998 44322 1      111  22223343   67899998886553334333 3444321 222122 2


Q ss_pred             CCCCCCCC----CCcccCCCeEE
Q 020301          299 FEDEPYMK----PGLSEMKNAIV  317 (328)
Q Consensus       299 ~~~EP~~~----~~L~~~~nvil  317 (328)
                      |.+|-+.+    ..+...+++++
T Consensus       172 ~~PErl~eG~a~~d~~~~~riVi  194 (444)
T 3vtf_A          172 SNPEFLREGSALEDFFKPDRIVI  194 (444)
T ss_dssp             ECCCCCCTTSHHHHHHSCSCEEE
T ss_pred             cCcccccCCccccccccCCcEEE
Confidence            34565432    13556666663

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.00067  Score=65.01  Aligned_cols=106  Identities=16%  Similarity=0.294  Sum_probs=67.0

Q ss_pred             EEEEEecCHHHHHHHHHHHhc-------CCcEEEEEcCCchhH---HHHHHhhhhh---hhhcCCCCCccccccCCHHHH
Q 020301          167 TVGVIGAGRIGSAYARMMVEG-------FKMNLIYYDLYQATR---LEKFVTAYGQ---FLKANGEQPVTWKRASSMDEV  233 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~-------fg~~V~~~d~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~el  233 (328)
                      +|+|||.|.-|.++|..|++.       |+.+|..|.+.++..   ..+.+....+   .+ ..-..+.......++++.
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YL-pgv~Lp~~i~~t~dl~~a  114 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYL-PGITLPDNLVANPDLIDS  114 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTB-TTCCCCSSEEEESCHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccC-CCCcCCCCcEEeCCHHHH
Confidence            799999999999999987642       335688887764311   1111110000   00 000112223334689999


Q ss_pred             hhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       234 l~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      ++.||+|++.+| +...+.++ ++.-..++++..+|+++-|=
T Consensus       115 l~~ad~ii~avP-s~~~r~~l-~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          115 VKDVDIIVFNIP-HQFLPRIC-SQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             HTTCSEEEECSC-GGGHHHHH-HHHTTTSCTTCEEEECCCSC
T ss_pred             HhcCCEEEEECC-hhhhHHHH-HHhccccCCCceeEEecccc
Confidence            999999999999 34444443 44455678899999999884

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.28  E-value=0.002  Score=59.89  Aligned_cols=121  Identities=14%  Similarity=0.187  Sum_probs=75.0

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch--hHHHHHHhhhhhhhhcCCCCCccccccCCH---HHHh
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEVL  234 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~ell  234 (328)
                      .++.|+++.|+|.|.+|+.++..| ...|+ +|.+++|+.+  .+.++..+.+..   ..+. ........++   .+.+
T Consensus       144 ~~l~gk~~lVlGAGGaaraia~~L-~~~G~~~v~v~nRt~~~~~~a~~la~~~~~---~~~~-~v~~~~~~~l~~~~~~l  218 (312)
T 3t4e_A          144 FDMRGKTMVLLGAGGAATAIGAQA-AIEGIKEIKLFNRKDDFFEKAVAFAKRVNE---NTDC-VVTVTDLADQHAFTEAL  218 (312)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEECSSTHHHHHHHHHHHHHH---HSSC-EEEEEETTCHHHHHHHH
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHH-HHcCCCEEEEEECCCchHHHHHHHHHHhhh---ccCc-ceEEechHhhhhhHhhc
Confidence            357899999999999999999997 57898 8999999832  122222222211   0010 0111123344   5678


Q ss_pred             hcCCEEEEcCCCCh--hhhccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301          235 READVISLHPVLDK--TTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (328)
Q Consensus       235 ~~aDiV~l~~plt~--~t~~li--~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~  290 (328)
                      .++|+|+.+.|..-  .....+  +.   +.++++.+++++.=.+ ..+.=|.+|-+.|.
T Consensus       219 ~~~DiIINaTp~Gm~~~~~~~~~~~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G~  274 (312)
T 3t4e_A          219 ASADILTNGTKVGMKPLENESLIGDV---SLLRPELLVTECVYNP-HMTKLLQQAQQAGC  274 (312)
T ss_dssp             HHCSEEEECSSTTSTTSTTCCSCCCG---GGSCTTCEEEECCCSS-SSCHHHHHHHHTTC
T ss_pred             cCceEEEECCcCCCCCCCCCcccCCH---HHcCCCCEEEEeccCC-CCCHHHHHHHHCCC
Confidence            89999999999652  111111  32   3467888999986544 34555555655553

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.27  E-value=0.001  Score=61.66  Aligned_cols=110  Identities=14%  Similarity=0.180  Sum_probs=61.4

Q ss_pred             CEEEEEecCHHHHH-HHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-hcCCEEEEc
Q 020301          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLH  243 (328)
Q Consensus       166 ~tvgIiG~G~IG~~-vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~  243 (328)
                      .++||||+|.||+. +++.+.+.-++++.++|+++... +++.+.|       +...    .+.+..+++ ..+|+|+++
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~-~~~a~~~-------g~~~----~~~~~~~~l~~~~D~V~i~   70 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVL-GTLATRY-------RVSA----TCTDYRDVLQYGVDAVMIH   70 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHH-HHHHHHT-------TCCC----CCSSTTGGGGGCCSEEEEC
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHHHc-------CCCc----cccCHHHHhhcCCCEEEEE
Confidence            37999999999984 88886432378888999986532 2222222       2110    023334455 789999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCcc
Q 020301          244 PVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga-~lIN~-aRG~~vde~aL~~aL~~g~i~  292 (328)
                      +|  +....-+-.   ..++.|. +++.- .--.+-+.+.|.++.++..+.
T Consensus        71 tp--~~~h~~~~~---~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (323)
T 1xea_A           71 AA--TDVHSTLAA---FFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  116 (323)
T ss_dssp             SC--GGGHHHHHH---HHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             CC--chhHHHHHH---HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence            99  332221112   2334453 55542 111223345566666655443

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.26  E-value=0.00096  Score=62.02  Aligned_cols=69  Identities=12%  Similarity=0.170  Sum_probs=47.4

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (328)
                      .++||||+|.||+..++.+.+.-++++. ++|+++... +++.+       ..+..    ..+.++++++.  +.|+|++
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~-~~~a~-------~~~~~----~~~~~~~~ll~~~~~D~V~i   73 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESA-QAFAN-------KYHLP----KAYDKLEDMLADESIDVIYV   73 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTT-CC----------CCCCS----CEESCHHHHHTCTTCCEEEE
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHH-HHHHH-------HcCCC----cccCCHHHHhcCCCCCEEEE
Confidence            4799999999999999887544467765 668876432 11111       11110    13579999998  7999999


Q ss_pred             cCCC
Q 020301          243 HPVL  246 (328)
Q Consensus       243 ~~pl  246 (328)
                      ++|.
T Consensus        74 ~tp~   77 (329)
T 3evn_A           74 ATIN   77 (329)
T ss_dssp             CSCG
T ss_pred             CCCc
Confidence            9994

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.26  E-value=0.00095  Score=61.85  Aligned_cols=66  Identities=17%  Similarity=0.286  Sum_probs=47.2

Q ss_pred             EEEEEecCHHHHHH-HHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEEE
Q 020301          167 TVGVIGAGRIGSAY-ARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (328)
Q Consensus       167 tvgIiG~G~IG~~v-A~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (328)
                      ++||||+|.||+.+ ++.+.+ -+++++ ++|+++... +++.+.|       +..    ..+.+++++++  ++|+|++
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~-~~~~~vav~d~~~~~~-~~~~~~~-------g~~----~~~~~~~~~l~~~~~D~V~i   68 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTSAERG-AAYATEN-------GIG----KSVTSVEELVGDPDVDAVYV   68 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHH-TTCEEEEEECSCHHHH-HHHHHHT-------TCS----CCBSCHHHHHTCTTCCEEEE
T ss_pred             eEEEEcccHHHHHhhhHHhhc-CCCeEEEEECCCHHHH-HHHHHHc-------CCC----cccCCHHHHhcCCCCCEEEE
Confidence            69999999999998 777655 788876 679886532 2222222       211    13468999997  4999999


Q ss_pred             cCC
Q 020301          243 HPV  245 (328)
Q Consensus       243 ~~p  245 (328)
                      ++|
T Consensus        69 ~tp   71 (332)
T 2glx_A           69 STT   71 (332)
T ss_dssp             CSC
T ss_pred             eCC
Confidence            999

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.25  E-value=0.0011  Score=61.60  Aligned_cols=70  Identities=11%  Similarity=0.133  Sum_probs=50.2

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (328)
                      .++||||+|.||+..++.+.+.-+++|. ++|+++.. .+++.+.|       +..    ..+.++++++.  +.|+|++
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~~~-------~~~----~~~~~~~~ll~~~~~D~V~i   73 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLEN-AQKMAKEL-------AIP----VAYGSYEELCKDETIDIIYI   73 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHH-HHHHHHHT-------TCC----CCBSSHHHHHHCTTCSEEEE
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHH-HHHHHHHc-------CCC----ceeCCHHHHhcCCCCCEEEE
Confidence            4799999999999999987543478877 67887643 22222222       211    23579999998  7999999


Q ss_pred             cCCCC
Q 020301          243 HPVLD  247 (328)
Q Consensus       243 ~~plt  247 (328)
                      ++|..
T Consensus        74 ~tp~~   78 (330)
T 3e9m_A           74 PTYNQ   78 (330)
T ss_dssp             CCCGG
T ss_pred             cCCCH
Confidence            99943

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.24  E-value=0.0012  Score=61.68  Aligned_cols=69  Identities=22%  Similarity=0.232  Sum_probs=49.6

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (328)
                      .++||||+|.||+..++.+.+.-++++. ++|+++... ++..+.|       +.    ...+.+++++++  .+|+|++
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~~~~~-------~~----~~~~~~~~~ll~~~~~D~V~i   70 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRL-REMKEKL-------GV----EKAYKDPHELIEDPNVDAVLV   70 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHH-HHHHHHH-------TC----SEEESSHHHHHHCTTCCEEEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHH-HHHHHHh-------CC----CceeCCHHHHhcCCCCCEEEE
Confidence            3799999999999999987433478877 679876532 2222222       11    113579999998  8999999


Q ss_pred             cCCC
Q 020301          243 HPVL  246 (328)
Q Consensus       243 ~~pl  246 (328)
                      ++|.
T Consensus        71 ~tp~   74 (344)
T 3ezy_A           71 CSST   74 (344)
T ss_dssp             CSCG
T ss_pred             cCCC
Confidence            9994

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=97.22  E-value=0.062  Score=50.01  Aligned_cols=115  Identities=18%  Similarity=0.234  Sum_probs=74.6

Q ss_pred             ccCCCEEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       162 ~l~g~tvgIiG~G--~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      .+.|.+|+++|=|  ++.++++..+ ..||++|.+..|..-...++..+...+.++..|.   ......+++|.+++||+
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~---~v~~~~d~~eav~~aDv  239 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIAC-AKMGMNFVACGPEELKPRSDVFKRCQEIVKETDG---SVSFTSNLEEALAGADV  239 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHH-HHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCC---EEEEESCHHHHHTTCSE
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHH-HHCCCEEEEECCccccCCHHHHHHHHHHHHHcCC---eEEEEcCHHHHHccCCE
Confidence            4789999999986  9999999987 5899999999885321111111100000111221   12234789999999999


Q ss_pred             EEE-cCCC------Chh-----hhccccHHHHhcC-CCCcEEEEcC---CCcccCHH
Q 020301          240 ISL-HPVL------DKT-----TYHLINKERLATM-KKEAILVNCS---RGPVIDEV  280 (328)
Q Consensus       240 V~l-~~pl------t~~-----t~~li~~~~~~~m-k~ga~lIN~a---RG~~vde~  280 (328)
                      |.. ....      .++     ...-++++.++.+ ||+++|.-+.   ||.=|+.+
T Consensus       240 vyt~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~LP~~Rg~EI~~e  296 (325)
T 1vlv_A          240 VYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYE  296 (325)
T ss_dssp             EEECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHH
T ss_pred             EEeccccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCCCCCCCcccCHH
Confidence            977 3310      011     1244789999999 9999999884   66655544

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.22  E-value=0.00054  Score=63.34  Aligned_cols=104  Identities=13%  Similarity=0.130  Sum_probs=60.0

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      .++||||+|.||+.+++.+.+.-++++. ++|+++... +           ..|..   ...+.++.+. .++|+|++|.
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~-~-----------~~g~~---~~~~~~l~~~-~~~DvViiat   73 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEV-P-----------FELQP---FRVVSDIEQL-ESVDVALVCS   73 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-------------------CCTT---SCEESSGGGS-SSCCEEEECS
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHH-H-----------HcCCC---cCCHHHHHhC-CCCCEEEECC
Confidence            4799999999999999987544578887 688876431 1           11211   1223455555 7899999999


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCC--C-cccCHHHHHHHHHcCC
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSR--G-PVIDEVALVEHLKQNP  290 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aR--G-~~vde~aL~~aL~~g~  290 (328)
                      |.  .+..   +.....++.|..++...=  + ..-+.+.|.++.++..
T Consensus        74 p~--~~h~---~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g  117 (304)
T 3bio_A           74 PS--REVE---RTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSG  117 (304)
T ss_dssp             CH--HHHH---HHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             Cc--hhhH---HHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCC
Confidence            83  3222   222334455666665421  2 2223456666666543

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.21  E-value=0.00016  Score=65.14  Aligned_cols=96  Identities=19%  Similarity=0.251  Sum_probs=62.6

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch------------------hHHHHHHhhhhhhhhcCCCCC
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQP  221 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~  221 (328)
                      ..|.+++|.|||.|.+|..+|+.|+ ..|. ++..+|+..-                  ++.+...+.+.+.   .....
T Consensus        27 ~~l~~~~VlVvG~Gg~G~~va~~La-~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~---np~~~  102 (249)
T 1jw9_B           27 EALKDSRVLIVGLGGLGCAASQYLA-SAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRI---NPHIA  102 (249)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH---CTTSE
T ss_pred             HHHhCCeEEEEeeCHHHHHHHHHHH-HcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHH---CCCcE
Confidence            4689999999999999999999984 6786 8999998751                  1111111111100   00000


Q ss_pred             ccc-c-cc--CCHHHHhhcCCEEEEcCCCChhhhccccHHHHhc
Q 020301          222 VTW-K-RA--SSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (328)
Q Consensus       222 ~~~-~-~~--~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~  261 (328)
                      ... . ..  .+++++++++|+|+.+.+ +.+++.++++...+.
T Consensus       103 v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~  145 (249)
T 1jw9_B          103 ITPVNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA  145 (249)
T ss_dssp             EEEECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH
T ss_pred             EEEEeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc
Confidence            000 0 01  145678999999999987 678888888877664

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.20  E-value=0.0015  Score=60.78  Aligned_cols=122  Identities=14%  Similarity=0.154  Sum_probs=67.1

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      ++|+|||.|.||..+|..|+ .-|.  +|..||++.... +.....+...... . ...... ..+. +.++.||+|+++
T Consensus         1 mkI~VIGaG~~G~~la~~l~-~~g~~~~V~l~D~~~~~~-~~~~~~l~~~~~~-~-~~~~i~-~~d~-~~~~~aDvViia   74 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALL-MKGFAREMVLIDVDKKRA-EGDALDLIHGTPF-T-RRANIY-AGDY-ADLKGSDVVIVA   74 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSSHHHH-HHHHHHHHHHGGG-S-CCCEEE-ECCG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEeCChHHH-HHHHHHHHhhhhh-c-CCcEEE-eCCH-HHhCCCCEEEEc
Confidence            37999999999999999875 4566  999999986422 2211111000000 0 011111 1343 567999999999


Q ss_pred             CCCChhhhcc-----------ccHHHHhcC---CCCcEEEEcCCCcccCHHHHHHHH--HcCCccEE
Q 020301          244 PVLDKTTYHL-----------INKERLATM---KKEAILVNCSRGPVIDEVALVEHL--KQNPMFRV  294 (328)
Q Consensus       244 ~plt~~t~~l-----------i~~~~~~~m---k~ga~lIN~aRG~~vde~aL~~aL--~~g~i~ga  294 (328)
                      +|... ..++           +-.+.++.+   .|++++|+++-+.=+....+.+..  ...++.|.
T Consensus        75 v~~~~-~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~  140 (319)
T 1a5z_A           75 AGVPQ-KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS  140 (319)
T ss_dssp             CCCCC-CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             cCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHHHHHhCCChhhEEee
Confidence            99533 1111           012333333   578999998654433223333322  33455554

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=97.19  E-value=0.063  Score=49.45  Aligned_cols=107  Identities=13%  Similarity=0.045  Sum_probs=74.3

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .+.|.+|+++|= +++.++.+..+ ..||++|.+..|..-...++..+.    +        ......++++.+++||+|
T Consensus       151 ~l~gl~ia~vGD~~rva~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~----~--------~~~~~~d~~eav~~aDvv  217 (301)
T 2ef0_A          151 GLAGLEVAWVGDGNNVLNSLLEVA-PLAGLKVRVATPKGYEPDPGLLKR----A--------NAFFTHDPKEAALGAHAL  217 (301)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHHH----H--------TCEEESCHHHHHTTCSEE
T ss_pred             CcCCcEEEEECCCchhHHHHHHHH-HHcCCEEEEECCchhcCCHHHHhh----c--------eeEEECCHHHHhcCCCEE
Confidence            478999999998 88999999986 589999999988532111111110    0        022347899999999999


Q ss_pred             EE-cCCCC-----hh------hhccccHHHHhcCCCCcEEEEcC---CCcccCHHH
Q 020301          241 SL-HPVLD-----KT------TYHLINKERLATMKKEAILVNCS---RGPVIDEVA  281 (328)
Q Consensus       241 ~l-~~plt-----~~------t~~li~~~~~~~mk~ga~lIN~a---RG~~vde~a  281 (328)
                      .. .....     +.      ...-++++.++++||++++.-+.   ||.=|+.+-
T Consensus       218 y~~~~~smg~~~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~eV  273 (301)
T 2ef0_A          218 YTDVWTSMGQEAEREKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEEA  273 (301)
T ss_dssp             EECCCC--------CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCHHH
T ss_pred             EecCcccCCcccchhHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccCHHH
Confidence            77 33110     11      12447899999999999999986   776666553

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.18  E-value=0.00097  Score=60.98  Aligned_cols=117  Identities=17%  Similarity=0.214  Sum_probs=71.2

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      ++.|+++.|+|.|.||+++|+.| ...| +|++++|+... .++..+.+.....  ...... ....++.+.+.++|+|+
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L-~~~G-~V~v~~r~~~~-~~~l~~~~~~~~~--~~~~~~-~d~~~~~~~~~~~DilV  198 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFEL-AKDN-NIIIANRTVEK-AEALAKEIAEKLN--KKFGEE-VKFSGLDVDLDGVDIII  198 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHH-TSSS-EEEEECSSHHH-HHHHHHHHHHHHT--CCHHHH-EEEECTTCCCTTCCEEE
T ss_pred             CcCCCEEEEECchHHHHHHHHHH-HHCC-CEEEEECCHHH-HHHHHHHHhhhcc--ccccee-EEEeeHHHhhCCCCEEE
Confidence            57899999999999999999997 5789 99999998643 2222222211000  000000 01123355678899999


Q ss_pred             EcCCCChhhh---ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          242 LHPVLDKTTY---HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       242 l~~plt~~t~---~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      .+.|......   ..+.  ..+.++++++++|+.-.+ ..+. |.+..++
T Consensus       199 n~ag~~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~p-~~t~-ll~~a~~  244 (287)
T 1nvt_A          199 NATPIGMYPNIDVEPIV--KAEKLREDMVVMDLIYNP-LETV-LLKEAKK  244 (287)
T ss_dssp             ECSCTTCTTCCSSCCSS--CSTTCCSSSEEEECCCSS-SSCH-HHHHHHT
T ss_pred             ECCCCCCCCCCCCCCCC--CHHHcCCCCEEEEeeeCC-ccCH-HHHHHHH
Confidence            9998654211   1120  135678999999998653 3333 4444443

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.18  E-value=0.0012  Score=61.83  Aligned_cols=68  Identities=22%  Similarity=0.308  Sum_probs=49.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhc-CCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  241 (328)
                      .++||||+|.||+..++.+.+. -++++. ++|+++... ++..+.|       +     ...+.+++++++  +.|+|+
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~-~~~~~~~-------~-----~~~~~~~~~ll~~~~~D~V~   80 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAAL-KAAVERT-------G-----ARGHASLTDMLAQTDADIVI   80 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHH-HHHHHHH-------C-----CEEESCHHHHHHHCCCSEEE
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHH-HHHHHHc-------C-----CceeCCHHHHhcCCCCCEEE
Confidence            5799999999999999987433 388866 789886532 2222222       2     134579999998  799999


Q ss_pred             EcCCC
Q 020301          242 LHPVL  246 (328)
Q Consensus       242 l~~pl  246 (328)
                      +++|.
T Consensus        81 i~tp~   85 (354)
T 3q2i_A           81 LTTPS   85 (354)
T ss_dssp             ECSCG
T ss_pred             ECCCc
Confidence            99994

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=97.14  E-value=0.053  Score=50.64  Aligned_cols=106  Identities=13%  Similarity=0.111  Sum_probs=70.0

Q ss_pred             ccCCCEEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       162 ~l~g~tvgIiG~G--~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      .+.|.+|+++|=|  +++.+++..+ ..||++|.+..|..-...++..+.-.+.++..|.   ......++++.+++||+
T Consensus       152 ~l~gl~ia~vGD~~~~va~Sl~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~---~v~~~~d~~eav~~aDv  227 (333)
T 1duv_G          152 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEAALVTECRALAQQNGG---NITLTEDVAKGVEGADF  227 (333)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHH-HHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTC---EEEEESCHHHHHTTCSE
T ss_pred             CCCCcEEEEECCCccchHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCC---eEEEEECHHHHhCCCCE
Confidence            5789999999986  9999999986 5799999999885321111111100001112221   12234789999999999


Q ss_pred             EEEcCC-CC-------hh-----hhccccHHHHhcC-CCCcEEEEc
Q 020301          240 ISLHPV-LD-------KT-----TYHLINKERLATM-KKEAILVNC  271 (328)
Q Consensus       240 V~l~~p-lt-------~~-----t~~li~~~~~~~m-k~ga~lIN~  271 (328)
                      |..-.= ..       ++     ...-+|.+.++.+ ||+++|.-+
T Consensus       228 vytd~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHc  273 (333)
T 1duv_G          228 IYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHC  273 (333)
T ss_dssp             EEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEEC
T ss_pred             EEeCCccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECC
Confidence            977322 10       11     1235799999999 999999887

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=97.13  E-value=0.13  Score=47.74  Aligned_cols=115  Identities=16%  Similarity=0.187  Sum_probs=75.0

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .+.|.+|+++|= +++.++++..+ ..||++|.+..|..-...++..+...+.++..|.   ......+++|.+++||+|
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~---~~~~~~d~~eav~~aDvv  227 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAG-TKLGADVVVATPEGYEPDEKVIKWAEQNAAESGG---SFELLHDPVKAVKDADVI  227 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTC---EEEEESCHHHHTTTCSEE
T ss_pred             CcCCcEEEEECCCcchHHHHHHHH-HHCCCEEEEECCccccCCHHHHHHHHHHHHHcCC---eEEEEeCHHHHhCCCCEE
Confidence            478999999997 89999999986 5899999999885321111111100000111121   122347899999999999


Q ss_pred             EEcCC-C------Chh-----hhccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 020301          241 SLHPV-L------DKT-----TYHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (328)
Q Consensus       241 ~l~~p-l------t~~-----t~~li~~~~~~~mk~ga~lIN~a---RG~~vde~  280 (328)
                      ..-.= .      .++     ...-++.+.++.+||+++|.-+.   ||.=|+.+
T Consensus       228 y~~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~lP~~Rg~EI~~e  282 (315)
T 1pvv_A          228 YTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDD  282 (315)
T ss_dssp             EECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             EEcceeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCCCCCCCCccCHH
Confidence            77332 1      111     12457999999999999999884   66655554

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.11  E-value=0.0012  Score=62.16  Aligned_cols=66  Identities=20%  Similarity=0.323  Sum_probs=48.6

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcC-CcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~f-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  241 (328)
                      .++||||+|.||+..++.+ +.. ++++. ++|+++... + ....       .+     ...+.+++++++  +.|+|+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l-~~~~~~~l~av~d~~~~~~-~-~a~~-------~g-----~~~~~~~~~ll~~~~~D~V~   70 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLA-SAADNLEVHGVFDILAEKR-E-AAAQ-------KG-----LKIYESYEAVLADEKVDAVL   70 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHH-HTSTTEEEEEEECSSHHHH-H-HHHT-------TT-----CCBCSCHHHHHHCTTCCEEE
T ss_pred             CcEEEECcCHHHHHHHHHH-HhCCCcEEEEEEcCCHHHH-H-HHHh-------cC-----CceeCCHHHHhcCCCCCEEE
Confidence            4799999999999999987 455 78876 568876542 1 1111       12     234579999998  789999


Q ss_pred             EcCCC
Q 020301          242 LHPVL  246 (328)
Q Consensus       242 l~~pl  246 (328)
                      +|.|.
T Consensus        71 i~tp~   75 (359)
T 3e18_A           71 IATPN   75 (359)
T ss_dssp             ECSCG
T ss_pred             EcCCc
Confidence            99994

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=97.11  E-value=0.0013  Score=64.11  Aligned_cols=116  Identities=13%  Similarity=0.166  Sum_probs=72.0

Q ss_pred             CCCEEEEEecCHH--HHHHHHHHHh--c-CCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          164 KGQTVGVIGAGRI--GSAYARMMVE--G-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       164 ~g~tvgIiG~G~I--G~~vA~~l~~--~-fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      ...+|+|||.|.+  |..+++.+++  . .| +|..||+.+... +.. ......+..   .+......+++++.++.||
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~l-e~~-~~~~~~l~~---~~~~I~~TtD~~eAl~dAD   77 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAA-QKN-EVIGNHSGN---GRWRYEAVSTLKKALSAAD   77 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHH-HHH-HHHHTTSTT---SCEEEEEESSHHHHHTTCS
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHH-HHH-HHHHHHHhc---cCCeEEEECCHHHHhcCCC
Confidence            3568999999997  5788887653  2 36 999999986431 111 111111111   2233444578999999999


Q ss_pred             EEEEcCCCC-----------hhhhccccH------------------------HHHhcCCCCcEEEEcCCCcccCHHHHH
Q 020301          239 VISLHPVLD-----------KTTYHLINK------------------------ERLATMKKEAILVNCSRGPVIDEVALV  283 (328)
Q Consensus       239 iV~l~~plt-----------~~t~~li~~------------------------~~~~~mk~ga~lIN~aRG~~vde~aL~  283 (328)
                      ||+++++-.           |.-.++...                        +.+....|++++||++---=+-..++.
T Consensus        78 fVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~  157 (450)
T 3fef_A           78 IVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLY  157 (450)
T ss_dssp             EEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHH
T ss_pred             EEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHH
Confidence            999999632           333343221                        233344589999999876544444554


Q ss_pred             HH
Q 020301          284 EH  285 (328)
Q Consensus       284 ~a  285 (328)
                      +.
T Consensus       158 k~  159 (450)
T 3fef_A          158 KV  159 (450)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.09  E-value=0.0018  Score=60.81  Aligned_cols=72  Identities=14%  Similarity=0.125  Sum_probs=49.6

Q ss_pred             cCCCEEEEEecCHHHH-HHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCC
Q 020301          163 LKGQTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EAD  238 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~-~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aD  238 (328)
                      ..-.++||||+|.||+ .+++.+.+.-+++|. ++|+++.. .+++.+.|       +     ...+.+++++++  +.|
T Consensus        25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~a~~~-------g-----~~~~~~~~~ll~~~~~D   91 (350)
T 3rc1_A           25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDR-AKRFTERF-------G-----GEPVEGYPALLERDDVD   91 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHH-HHHHHHHH-------C-----SEEEESHHHHHTCTTCS
T ss_pred             CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHH-HHHHHHHc-------C-----CCCcCCHHHHhcCCCCC
Confidence            3446899999999998 788887433388876 67887643 22222222       2     123479999997  589


Q ss_pred             EEEEcCCCC
Q 020301          239 VISLHPVLD  247 (328)
Q Consensus       239 iV~l~~plt  247 (328)
                      +|++|+|..
T Consensus        92 ~V~i~tp~~  100 (350)
T 3rc1_A           92 AVYVPLPAV  100 (350)
T ss_dssp             EEEECCCGG
T ss_pred             EEEECCCcH
Confidence            999999943

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=97.09  E-value=0.0031  Score=59.26  Aligned_cols=113  Identities=17%  Similarity=0.135  Sum_probs=67.4

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l  242 (328)
                      .++||||+|.||+.+++.+.+.-++++. ++|+++.. .+++.+.|       +..+ ....+.+++++++  ..|+|++
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~-~~~~a~~~-------~~~~-~~~~~~~~~~ll~~~~~D~V~i   77 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEK-AKAFATAN-------NYPE-STKIHGSYESLLEDPEIDALYV   77 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHH-HHHHHHHT-------TCCT-TCEEESSHHHHHHCTTCCEEEE
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHH-HHHHHHHh-------CCCC-CCeeeCCHHHHhcCCCCCEEEE
Confidence            4799999999999999987433467764 68887643 22222222       2100 1123578999997  5999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCcc
Q 020301          243 HPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga-~lIN~-aRG~~vde~aL~~aL~~g~i~  292 (328)
                      ++|  +.+..   +-....++.|. +++.- ---.+-+.+.|.++.++..+.
T Consensus        78 ~tp--~~~h~---~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~  124 (362)
T 1ydw_A           78 PLP--TSLHV---EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  124 (362)
T ss_dssp             CCC--GGGHH---HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             cCC--hHHHH---HHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence            999  33222   22233455665 44432 112223446778877765543

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.09  E-value=0.0013  Score=62.62  Aligned_cols=39  Identities=26%  Similarity=0.490  Sum_probs=35.2

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .-+.|+||+|+|.|.+|+.+++.+ +.+|++|+++|+++.
T Consensus        10 ~~~~~k~IlIlG~G~~g~~la~aa-~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           10 IILPGKTIGIIGGGQLGRMMALAA-KEMGYKIAVLDPTKN   48 (389)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSTT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCC
Confidence            347899999999999999999996 799999999998764

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.09  E-value=0.002  Score=60.80  Aligned_cols=65  Identities=14%  Similarity=0.204  Sum_probs=46.5

Q ss_pred             CEEEEEecCHHHHH-HHHHHHhcC-CcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEE
Q 020301          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (328)
Q Consensus       166 ~tvgIiG~G~IG~~-vA~~l~~~f-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  240 (328)
                      .++||||+|.||+. .++.+ +.. +++|. ++|+++....+    .|       +    +...+.+++++++  ..|+|
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~~~~~----~~-------~----~~~~~~~~~~ll~~~~~D~V   71 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLI-RSVPGLNLAFVASRDEEKVKR----DL-------P----DVTVIASPEAAVQHPDVDLV   71 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTSTTEEEEEEECSCHHHHHH----HC-------T----TSEEESCHHHHHTCTTCSEE
T ss_pred             ceEEEECCCHHHHHHHHHHH-hhCCCeEEEEEEcCCHHHHHh----hC-------C----CCcEECCHHHHhcCCCCCEE
Confidence            47999999999997 67765 444 78876 67887643211    11       1    1223579999998  78999


Q ss_pred             EEcCCC
Q 020301          241 SLHPVL  246 (328)
Q Consensus       241 ~l~~pl  246 (328)
                      ++|.|.
T Consensus        72 ~i~tp~   77 (364)
T 3e82_A           72 VIASPN   77 (364)
T ss_dssp             EECSCG
T ss_pred             EEeCCh
Confidence            999994

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.08  E-value=0.0016  Score=60.81  Aligned_cols=71  Identities=21%  Similarity=0.267  Sum_probs=50.0

Q ss_pred             CEEEEEecCHHHHHHHHHHH-hcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc--CCEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~-~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~  241 (328)
                      .++||||+|.||+..++.+. +.-++++. ++|+++.. .++..+.|       +.   ....+.+++++++.  .|+|+
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~-~~~~~~~~-------g~---~~~~~~~~~~ll~~~~~D~V~   71 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEA-AQKVVEQY-------QL---NATVYPNDDSLLADENVDAVL   71 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHH-HHHHHHHT-------TC---CCEEESSHHHHHHCTTCCEEE
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHH-HHHHHHHh-------CC---CCeeeCCHHHHhcCCCCCEEE
Confidence            37999999999999999874 33578876 67887643 22222222       21   11245799999987  99999


Q ss_pred             EcCCCC
Q 020301          242 LHPVLD  247 (328)
Q Consensus       242 l~~plt  247 (328)
                      +++|..
T Consensus        72 i~tp~~   77 (344)
T 3mz0_A           72 VTSWGP   77 (344)
T ss_dssp             ECSCGG
T ss_pred             ECCCch
Confidence            999943

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.08  E-value=0.0021  Score=60.05  Aligned_cols=103  Identities=17%  Similarity=0.315  Sum_probs=60.1

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      ++|+|||.|.+|..+|..++ .-|. +|..||++.... +.............. .........++ +.++.||+|++++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la-~~g~~~V~L~Di~~~~l-~~~~~~l~~~~~~~~-~~~~i~~t~d~-~al~~aD~VI~av   90 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLG-QKDLGDVYMFDIIEGVP-QGKALDLNHCMALIG-SPAKIFGENNY-EYLQNSDVVIITA   90 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSTTHH-HHHHHHHHHHHHHHT-CCCCEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCeEEEEECCHHHH-HHHHHHHHhHhhccC-CCCEEEECCCH-HHHCCCCEEEEcC
Confidence            68999999999999999875 4576 899999986432 211111101111001 11112222567 6789999999998


Q ss_pred             --CCChh-hh--------ccccHH---HHhcCCCCcEEEEcCC
Q 020301          245 --VLDKT-TY--------HLINKE---RLATMKKEAILVNCSR  273 (328)
Q Consensus       245 --plt~~-t~--------~li~~~---~~~~mk~ga~lIN~aR  273 (328)
                        |..+. |+        .++ .+   .+....|++++|+++-
T Consensus        91 g~p~k~g~tr~dl~~~n~~i~-~~i~~~i~~~~p~a~viv~tN  132 (328)
T 2hjr_A           91 GVPRKPNMTRSDLLTVNAKIV-GSVAENVGKYCPNAFVICITN  132 (328)
T ss_dssp             SCCCCTTCCSGGGHHHHHHHH-HHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCCCCCchhhHHhhhHHHH-HHHHHHHHHHCCCeEEEEecC
Confidence              43221 11        111 11   2222348999998754

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.07  E-value=0.0013  Score=60.77  Aligned_cols=123  Identities=15%  Similarity=0.133  Sum_probs=67.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      ++|+|||.|.+|..+|..++ ..|.  +|..||+..... +.....+.... . -....... ..+. +.++.||+|+++
T Consensus         1 mkI~VIGaG~vG~~la~~la-~~g~~~eV~L~D~~~~~~-~~~~~~l~~~~-~-~~~~~~i~-~~~~-~a~~~aDvVIi~   74 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALV-LRGSCSELVLVDRDEDRA-QAEAEDIAHAA-P-VSHGTRVW-HGGH-SELADAQVVILT   74 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCCSEEEEECSSHHHH-HHHHHHHTTSC-C-TTSCCEEE-EECG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCCHHHH-HHHHHhhhhhh-h-hcCCeEEE-ECCH-HHhCCCCEEEEc
Confidence            37999999999999999874 5577  999999986422 22111111000 0 00011111 1243 568999999999


Q ss_pred             CCCChh-----------hhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEE
Q 020301          244 PVLDKT-----------TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (328)
Q Consensus       244 ~plt~~-----------t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ga  294 (328)
                      ++....           +..++.  .+.+....|++++|+++-+.=+....+.+.....++.|.
T Consensus        75 ~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           75 AGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             C------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             CCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence            953221           111110  122333468999999866543334445555444555555

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.05  E-value=0.00015  Score=66.64  Aligned_cols=98  Identities=13%  Similarity=0.078  Sum_probs=62.6

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-hcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~~  244 (328)
                      ++++|||.|.||..+|..|+ .-|.+|.+|+|+.... +        .....|..+... . .+..+.+ ..+|+|++++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~-~~g~~V~~~~r~~~~~-~--------~~~~~g~~~~~~-~-~~~~~~~~~~~D~vilav   70 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQ-QSLPHTTLIGRHAKTI-T--------YYTVPHAPAQDI-V-VKGYEDVTNTFDVIIIAV   70 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-HHCTTCEEEESSCEEE-E--------EESSTTSCCEEE-E-EEEGGGCCSCEEEEEECS
T ss_pred             cEEEEECCCHHHHHHHHHHH-HCCCeEEEEEeccCcE-E--------EEecCCeeccce-e-cCchHhcCCCCCEEEEeC
Confidence            47999999999999999985 4578999999985321 0        001112111111 1 1333443 8899999999


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCCCccc
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~v  277 (328)
                      |. .++...+ ++.-..+++++++|.+.-|=-.
T Consensus        71 k~-~~~~~~l-~~l~~~l~~~~~iv~~~nGi~~  101 (294)
T 3g17_A           71 KT-HQLDAVI-PHLTYLAHEDTLIILAQNGYGQ  101 (294)
T ss_dssp             CG-GGHHHHG-GGHHHHEEEEEEEEECCSSCCC
T ss_pred             Cc-cCHHHHH-HHHHHhhCCCCEEEEeccCccc
Confidence            94 3455544 3333446678899998877433

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.05  E-value=0.0024  Score=59.48  Aligned_cols=104  Identities=14%  Similarity=0.172  Sum_probs=60.5

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      ++|+|||.|.+|..+|..++ .-|. +|..||+..... +.........+.... .........++ +.++.||+|+++.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la-~~g~~~v~L~Di~~~~l-~~~~~~l~~~~~~~~-~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIV-QKNLGDVVLFDIVKNMP-HGKALDTSHTNVMAY-SNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSSSHH-HHHHHHHHTHHHHHT-CCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCHHHH-HHHHHHHHhhhhhcC-CCcEEEECCCH-HHhCCCCEEEEeC
Confidence            58999999999999999975 4466 899999886432 211111111011001 11112222567 7789999999998


Q ss_pred             --CCChhh------h-cc------ccHHHH---hcCCCCcEEEEcCC
Q 020301          245 --VLDKTT------Y-HL------INKERL---ATMKKEAILVNCSR  273 (328)
Q Consensus       245 --plt~~t------~-~l------i~~~~~---~~mk~ga~lIN~aR  273 (328)
                        |..+.-      + .+      +-++.+   ....|++++|+++-
T Consensus        81 g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  127 (322)
T 1t2d_A           81 GFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN  127 (322)
T ss_dssp             SCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             CCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence              544331      1 11      112222   22348999998844

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.04  E-value=0.00076  Score=62.29  Aligned_cols=117  Identities=15%  Similarity=0.202  Sum_probs=66.1

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH-HHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~aDiV~l~~  244 (328)
                      .+++|||.|.||..+|..| . -|.+|.+++|+... .+.. .+.+-.....+..   .....+. ++....+|+|++++
T Consensus         3 mkI~IiGaGa~G~~~a~~L-~-~g~~V~~~~r~~~~-~~~l-~~~G~~~~~~~~~---~~~~~~~~~~~~~~~D~vilav   75 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYL-S-LYHDVTVVTRRQEQ-AAAI-QSEGIRLYKGGEE---FRADCSADTSINSDFDLLVVTV   75 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHH-H-TTSEEEEECSCHHH-HHHH-HHHCEEEEETTEE---EEECCEEESSCCSCCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHH-h-cCCceEEEECCHHH-HHHH-HhCCceEecCCCe---ecccccccccccCCCCEEEEEe
Confidence            5899999999999999997 5 68999999998632 1111 1111111111100   0000111 24567899999999


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEE
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ga  294 (328)
                      |. .++...+  +.++.+.++. +|.+.-|=- .++.|.+.+...++.++
T Consensus        76 K~-~~~~~~l--~~l~~~~~~~-ivs~~nGi~-~~e~l~~~~~~~~vl~g  120 (307)
T 3ego_A           76 KQ-HQLQSVF--SSLERIGKTN-ILFLQNGMG-HIHDLKDWHVGHSIYVG  120 (307)
T ss_dssp             CG-GGHHHHH--HHTTSSCCCE-EEECCSSSH-HHHHHHTCCCSCEEEEE
T ss_pred             CH-HHHHHHH--HHhhcCCCCe-EEEecCCcc-HHHHHHHhCCCCcEEEE
Confidence            93 3444443  3334455666 887766632 23344444444444333

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=97.04  E-value=0.037  Score=51.79  Aligned_cols=106  Identities=13%  Similarity=0.184  Sum_probs=70.2

Q ss_pred             ccCCCEEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       162 ~l~g~tvgIiG~G--~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      .+.|.+|+++|=|  +++.+++..+ ..||++|.+..|..-...++..+...+.++..|.   ......++++.+++||+
T Consensus       152 ~l~gl~va~vGD~~~~va~Sl~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~---~v~~~~d~~eav~~aDv  227 (335)
T 1dxh_A          152 PLHDISYAYLGDARNNMGNSLLLIG-AKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGA---KLTLTEDPKEAVKGVDF  227 (335)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHH-HHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTC---EEEEESCHHHHTTTCSE
T ss_pred             CcCCeEEEEecCCccchHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCC---eEEEEeCHHHHhCCCCE
Confidence            5889999999996  9999999986 5899999999885421111111100000111121   12234789999999999


Q ss_pred             EEEcCC-C-C------hh-----hhccccHHHHhcC-CCCcEEEEc
Q 020301          240 ISLHPV-L-D------KT-----TYHLINKERLATM-KKEAILVNC  271 (328)
Q Consensus       240 V~l~~p-l-t------~~-----t~~li~~~~~~~m-k~ga~lIN~  271 (328)
                      |..-.= . .      ++     ...-+|.+.++.+ ||+++|.-+
T Consensus       228 vytd~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHc  273 (335)
T 1dxh_A          228 VHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHC  273 (335)
T ss_dssp             EEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEEC
T ss_pred             EEeCCccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECC
Confidence            976322 1 0      11     1235799999999 999999877

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.01  E-value=0.0016  Score=60.55  Aligned_cols=103  Identities=15%  Similarity=0.170  Sum_probs=64.1

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      .++||||+|+||+.+++.+.+.-++++. ++|++....       +       +   .+...+.++++++..+|+|+++.
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~-------~-------~---~gv~~~~d~~~ll~~~DvViiat   66 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD-------T-------K---TPVFDVADVDKHADDVDVLFLCM   66 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS-------S-------S---SCEEEGGGGGGTTTTCSEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHh-------h-------c---CCCceeCCHHHHhcCCCEEEEcC
Confidence            3799999999999999987433378754 778764320       0       0   11223457788888899999999


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCCCcc-c-CH-HHHHHHHHcCC
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV-I-DE-VALVEHLKQNP  290 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-v-de-~aL~~aL~~g~  290 (328)
                      |....     -+.....++.|.-+|...-..+ + +. +.|.++.+++.
T Consensus        67 p~~~h-----~~~~~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           67 GSATD-----IPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             CTTTH-----HHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             CcHHH-----HHHHHHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence            84322     1233345566766665543332 2 22 45666666544

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=97.00  E-value=0.0013  Score=64.58  Aligned_cols=128  Identities=13%  Similarity=0.267  Sum_probs=75.4

Q ss_pred             CCEEEEEecCHH--HHHHHHHHHh--cC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          165 GQTVGVIGAGRI--GSAYARMMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       165 g~tvgIiG~G~I--G~~vA~~l~~--~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      ..+|+|||.|.+  |.++|..+++  ++ |.+|..||+.... .+...+.........+ .+.......++++.++.||+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~-l~~~~~~~~~~l~~~~-~~~~I~~ttD~~eal~dAD~   80 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEER-LDAILTIAKKYVEEVG-ADLKFEKTMNLDDVIIDADF   80 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHH-HHHHHHHHHHHHHHTT-CCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHH-HHHHHHHHHHHhccCC-CCcEEEEECCHHHHhCCCCE
Confidence            468999999997  5666766542  44 7899999998643 2211111001011111 22233334688888999999


Q ss_pred             EEEcCCCC-----------hhhhcccc----------------------------HHHHhcCCCCcEEEEcCCCcccCHH
Q 020301          240 ISLHPVLD-----------KTTYHLIN----------------------------KERLATMKKEAILVNCSRGPVIDEV  280 (328)
Q Consensus       240 V~l~~plt-----------~~t~~li~----------------------------~~~~~~mk~ga~lIN~aRG~~vde~  280 (328)
                      |++++|..           +.-.+++.                            .+.+....|++++||++---=+-..
T Consensus        81 VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~  160 (480)
T 1obb_A           81 VINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTT  160 (480)
T ss_dssp             EEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHH
T ss_pred             EEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHH
Confidence            99999741           00011110                            1234445689999999876545555


Q ss_pred             HHHHHHHcCCccEEE
Q 020301          281 ALVEHLKQNPMFRVG  295 (328)
Q Consensus       281 aL~~aL~~g~i~gaa  295 (328)
                      ++.+ +...++.|.+
T Consensus       161 ~~~k-~p~~rviG~c  174 (480)
T 1obb_A          161 LVTR-TVPIKAVGFC  174 (480)
T ss_dssp             HHHH-HSCSEEEEEC
T ss_pred             HHHH-CCCCcEEecC
Confidence            6655 5555666663

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.98  E-value=0.0042  Score=57.66  Aligned_cols=69  Identities=13%  Similarity=0.214  Sum_probs=47.8

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcC---CcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGF---KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~f---g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  239 (328)
                      .++||||+|.||+..++.+ +..   ++++. ++|+++.. .+++.+.|       +..    ..+.+++++++  ..|+
T Consensus         3 ~rigiiG~G~ig~~~~~~l-~~~~~~~~~l~av~d~~~~~-a~~~a~~~-------~~~----~~~~~~~~ll~~~~vD~   69 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVL-QTLPRSEHQVVAVAARDLSR-AKEFAQKH-------DIP----KAYGSYEELAKDPNVEV   69 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TTSCTTTEEEEEEECSSHHH-HHHHHHHH-------TCS----CEESSHHHHHHCTTCCE
T ss_pred             cEEEEECchHHHHHHHHHH-HhCCCCCeEEEEEEcCCHHH-HHHHHHHc-------CCC----cccCCHHHHhcCCCCCE
Confidence            3799999999999999986 444   35654 57887643 23333333       211    13579999998  6999


Q ss_pred             EEEcCCCC
Q 020301          240 ISLHPVLD  247 (328)
Q Consensus       240 V~l~~plt  247 (328)
                      |++++|..
T Consensus        70 V~i~tp~~   77 (334)
T 3ohs_X           70 AYVGTQHP   77 (334)
T ss_dssp             EEECCCGG
T ss_pred             EEECCCcH
Confidence            99999943

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=96.94  E-value=0.053  Score=50.39  Aligned_cols=140  Identities=16%  Similarity=0.099  Sum_probs=84.5

Q ss_pred             HHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecC-HHHHHHHHH
Q 020301          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM  183 (328)
Q Consensus       105 ~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G-~IG~~vA~~  183 (328)
                      ++-.+|+|.|.-+....+.  .+++=++.+.+++                     | .+.|.+|++||=| ++.++.+..
T Consensus       119 A~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~---------------------g-~l~gl~va~vGD~~~va~Sl~~~  174 (321)
T 1oth_A          119 AKEASIPIINGLSDLYHPI--QILADYLTLQEHY---------------------S-SLKGLTLSWIGDGNNILHSIMMS  174 (321)
T ss_dssp             HHHCSSCEEESCCSSCCHH--HHHHHHHHHHHHH---------------------S-CCTTCEEEEESCSSHHHHHHHTT
T ss_pred             HHhCCCCEEcCCCCCCCcH--HHHHHHHHHHHHh---------------------C-CcCCcEEEEECCchhhHHHHHHH
Confidence            3445799999766444333  3333344333321                     1 4789999999985 477777777


Q ss_pred             HHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC----CCChhh--------h
Q 020301          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP----VLDKTT--------Y  251 (328)
Q Consensus       184 l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~----plt~~t--------~  251 (328)
                      + ..||++|.+..|..-...++..+.-.+.++..|.   ......++++.++++|+|..-+    ....+.        .
T Consensus       175 ~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~---~~~~~~d~~eav~~aDvvy~d~w~s~g~e~~~~~~~~~~~~  250 (321)
T 1oth_A          175 A-AKFGMHLQAATPKGYEPDASVTKLAEQYAKENGT---KLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQG  250 (321)
T ss_dssp             T-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTC---CEEEESCHHHHHTTCSEEEECCSSCTTCGGGHHHHHHHTTT
T ss_pred             H-HHcCCeEEEECCccccCCHHHHHHHHHHHHHcCC---eEEEEECHHHHhccCCEEEEeccccccchhhhHHHHHhccC
Confidence            5 5799999999885321111111100000111121   1233578999999999998832    211111        1


Q ss_pred             ccccHHHHhcCCCCcEEEEcC
Q 020301          252 HLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       252 ~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .-+|.+.++.+||+++|.-+.
T Consensus       251 y~v~~~~l~~a~~dai~mH~l  271 (321)
T 1oth_A          251 YQVTMKTAKVAASDWTFLHCL  271 (321)
T ss_dssp             CCBCHHHHHTSCTTCEEEECS
T ss_pred             ceECHHHHhhcCCCCEEECCC
Confidence            346999999999999999883

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.92  E-value=0.002  Score=56.10  Aligned_cols=94  Identities=16%  Similarity=0.135  Sum_probs=55.9

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccC---CHHHH-hhcCCEEEE
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS---SMDEV-LREADVISL  242 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~el-l~~aDiV~l  242 (328)
                      ++.|+|+|.+|+.+|+.| ...|.+|+++|+++... +...+       ..+.... .....   .++++ +.+||+|++
T Consensus         2 ~iiIiG~G~~G~~la~~L-~~~g~~v~vid~~~~~~-~~l~~-------~~~~~~i-~gd~~~~~~l~~a~i~~ad~vi~   71 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSM-LSRKYGVVIINKDRELC-EEFAK-------KLKATII-HGDGSHKEILRDAEVSKNDVVVI   71 (218)
T ss_dssp             CEEEECCHHHHHHHHHHH-HHTTCCEEEEESCHHHH-HHHHH-------HSSSEEE-ESCTTSHHHHHHHTCCTTCEEEE
T ss_pred             EEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHH-------HcCCeEE-EcCCCCHHHHHhcCcccCCEEEE
Confidence            689999999999999997 57899999999886532 11111       1111100 00112   24443 678999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      ++|....  +++-....+.+.+...+|-..
T Consensus        72 ~~~~d~~--n~~~~~~a~~~~~~~~iia~~   99 (218)
T 3l4b_C           72 LTPRDEV--NLFIAQLVMKDFGVKRVVSLV   99 (218)
T ss_dssp             CCSCHHH--HHHHHHHHHHTSCCCEEEECC
T ss_pred             ecCCcHH--HHHHHHHHHHHcCCCeEEEEE
Confidence            9985433  333333444443444455433

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=96.91  E-value=0.019  Score=53.07  Aligned_cols=148  Identities=16%  Similarity=0.090  Sum_probs=91.0

Q ss_pred             HHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecC--HHHHHHHH
Q 020301          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYAR  182 (328)
Q Consensus       105 ~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G--~IG~~vA~  182 (328)
                      ++--+|+|.|.-+....+.  .+++=++.+.+++         |             .+.|.+|+++|=|  ++.++++.
T Consensus       112 A~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~---------g-------------~l~gl~va~vGD~~~rva~Sl~~  167 (307)
T 2i6u_A          112 ASVATVPVINALSDEFHPC--QVLADLQTIAERK---------G-------------ALRGLRLSYFGDGANNMAHSLLL  167 (307)
T ss_dssp             HHHCSSCEEESCCSSCCHH--HHHHHHHHHHHHH---------S-------------CCTTCEEEEESCTTSHHHHHHHH
T ss_pred             HhhCCCCEEcCCCCCcCcc--HHHHHHHHHHHHh---------C-------------CcCCeEEEEECCCCcCcHHHHHH
Confidence            3445799999765444333  3333334333321         1             4789999999986  99999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE-cCCCC------hh-----h
Q 020301          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL-HPVLD------KT-----T  250 (328)
Q Consensus       183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l-~~plt------~~-----t  250 (328)
                      .+ ..||++|.+..|..-...++..+...+.++..|.   ......+++|.+++||+|.. .....      ++     .
T Consensus       168 ~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~---~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~  243 (307)
T 2i6u_A          168 GG-VTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGA---SVTVTADAHAAAAGADVLVTDTWTSMGQENDGLDRVKPFR  243 (307)
T ss_dssp             HH-HHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTC---CEEEESCHHHHHTTCSEEEECCSSCTTCTTSCCCSSGGGG
T ss_pred             HH-HHCCCEEEEECCccccCCHHHHHHHHHHHHHcCC---eEEEEECHHHHhcCCCEEEecceecCCcccchHHHHHHHh
Confidence            86 5899999999885321111111100000111221   12234789999999999977 33110      11     1


Q ss_pred             hccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 020301          251 YHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (328)
Q Consensus       251 ~~li~~~~~~~mk~ga~lIN~a---RG~~vde~  280 (328)
                      ..-++++.++.+||+++|.-+.   ||.=|+.+
T Consensus       244 ~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~e  276 (307)
T 2i6u_A          244 PFQLNSRLLALADSDAIVLHCLPAHRGDEITDA  276 (307)
T ss_dssp             GGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHH
T ss_pred             hcCCCHHHHhhcCCCcEEECCCCCCCCcccCHh
Confidence            2447899999999999999884   66555544

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.89  E-value=0.0019  Score=60.83  Aligned_cols=68  Identities=10%  Similarity=0.142  Sum_probs=47.2

Q ss_pred             CEEEEEecCHHHHH-HHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC--CEEE
Q 020301          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~~-vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiV~  241 (328)
                      .++||||+|.||+. .++.+.+.-++++. ++|+++... ++..+.|       +    ....+.+++++++..  |+|+
T Consensus         6 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~-------~----~~~~~~~~~~ll~~~~vD~V~   73 (359)
T 3m2t_A            6 IKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERA-RRVHRFI-------S----DIPVLDNVPAMLNQVPLDAVV   73 (359)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHH-GGGGGTS-------C----SCCEESSHHHHHHHSCCSEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHH-HHHHHhc-------C----CCcccCCHHHHhcCCCCCEEE
Confidence            47999999999995 88887433378876 779876532 1111111       1    112357999999865  9999


Q ss_pred             EcCC
Q 020301          242 LHPV  245 (328)
Q Consensus       242 l~~p  245 (328)
                      +|+|
T Consensus        74 i~tp   77 (359)
T 3m2t_A           74 MAGP   77 (359)
T ss_dssp             ECSC
T ss_pred             EcCC
Confidence            9999

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=96.87  E-value=0.0024  Score=57.47  Aligned_cols=99  Identities=19%  Similarity=0.230  Sum_probs=68.7

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEE-EEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      -+..+|+++|+|+||+.+++.   . ++++ .+|+ . +.                +..  +.....+++++++.+|+|+
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~---~-~leLv~v~~-~-k~----------------gel--gv~a~~d~d~lla~pD~VV   65 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL---G-NFEKIYAYD-R-IS----------------KDI--PGVVRLDEFQVPSDVSTVV   65 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH---S-CCSEEEEEC-S-SC----------------CCC--SSSEECSSCCCCTTCCEEE
T ss_pred             cccceEEEECcCHHHHHHHhc---C-CcEEEEEEe-c-cc----------------ccc--CceeeCCHHHHhhCCCEEE
Confidence            456799999999999999996   3 6765 4555 1 10                111  2223467999999999998


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCC
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP  290 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde---~aL~~aL~~g~  290 (328)
                      =|.+  .   .-+.+....-++.|.-+|-+|-|.+.|.   +.|.++-++|.
T Consensus        66 e~A~--~---~av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg  112 (253)
T 1j5p_A           66 ECAS--P---EAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSP  112 (253)
T ss_dssp             ECSC--H---HHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCS
T ss_pred             ECCC--H---HHHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCC
Confidence            8765  2   2344445667889999999999999887   45666666554

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=96.87  E-value=0.0031  Score=59.34  Aligned_cols=74  Identities=15%  Similarity=0.265  Sum_probs=51.4

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHH-hcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc--CC
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--AD  238 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~-~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aD  238 (328)
                      ..-.++||||+|.||+..++.++ +.-++++. ++|+++... ++..+.|       +.   ....+.+++++++.  .|
T Consensus        21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~-~~~a~~~-------g~---~~~~~~~~~~ll~~~~~D   89 (357)
T 3ec7_A           21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRA-QAALDKY-------AI---EAKDYNDYHDLINDKDVE   89 (357)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHH-HHHHHHH-------TC---CCEEESSHHHHHHCTTCC
T ss_pred             CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHH-HHHHHHh-------CC---CCeeeCCHHHHhcCCCCC
Confidence            33458999999999999999874 23478876 689886532 2222322       11   12245799999984  89


Q ss_pred             EEEEcCCCC
Q 020301          239 VISLHPVLD  247 (328)
Q Consensus       239 iV~l~~plt  247 (328)
                      +|++|.|..
T Consensus        90 ~V~i~tp~~   98 (357)
T 3ec7_A           90 VVIITASNE   98 (357)
T ss_dssp             EEEECSCGG
T ss_pred             EEEEcCCcH
Confidence            999999943

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.86  E-value=0.0025  Score=61.76  Aligned_cols=73  Identities=11%  Similarity=0.119  Sum_probs=48.2

Q ss_pred             CEEEEEecCHHHH-HHHHHHHhcCCcEE-EEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEE
Q 020301          166 QTVGVIGAGRIGS-AYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~-~vA~~l~~~fg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  241 (328)
                      .++||||+|.||+ .+++.+.+.-++++ .++|++... .+++.+.|       +........+.+++++++  +.|+|+
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~-~~~~a~~~-------g~~~~~~~~~~~~~~ll~~~~vD~V~  155 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEK-AKIVAAEY-------GVDPRKIYDYSNFDKIAKDPKIDAVY  155 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHH-HHHHHHHT-------TCCGGGEECSSSGGGGGGCTTCCEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHH-HHHHHHHh-------CCCcccccccCCHHHHhcCCCCCEEE
Confidence            4899999999997 88888633236776 478887643 22222222       221111123578999997  799999


Q ss_pred             EcCCC
Q 020301          242 LHPVL  246 (328)
Q Consensus       242 l~~pl  246 (328)
                      +++|.
T Consensus       156 iatp~  160 (433)
T 1h6d_A          156 IILPN  160 (433)
T ss_dssp             ECSCG
T ss_pred             EcCCc
Confidence            99993

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.86  E-value=0.0031  Score=58.53  Aligned_cols=109  Identities=17%  Similarity=0.236  Sum_probs=61.2

Q ss_pred             CCEEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      -++|+|||.|.||..+|..++. ++.-+|..||+... ..+.............+ ......  .+..+.++.||+|+++
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~-~~~~~~~dl~~~~~~~~-~~~~i~--~~~~~al~~aDvViia   81 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANES-KAIGDAMDFNHGKVFAP-KPVDIW--HGDYDDCRDADLVVIC   81 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH-HHHHHHHHHHHHTTSSS-SCCEEE--ECCGGGTTTCSEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcc-hHHHHHhhHHHHhhhcC-CCeEEE--cCcHHHhCCCCEEEEc
Confidence            3689999999999999988742 23348999999864 22221111111000000 011111  2335678999999999


Q ss_pred             CCCChhhhcc-----c------cH---HHHhcCCCCcEEEEcCCCcccCHH
Q 020301          244 PVLDKTTYHL-----I------NK---ERLATMKKEAILVNCSRGPVIDEV  280 (328)
Q Consensus       244 ~plt~~t~~l-----i------~~---~~~~~mk~ga~lIN~aRG~~vde~  280 (328)
                      .|... ..++     +      -.   +.+....|++++++.+-  .+|.-
T Consensus        82 ~~~~~-~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN--Pv~~~  129 (316)
T 1ldn_A           82 AGANQ-KPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN--PVDIL  129 (316)
T ss_dssp             CSCCC-CTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS--SHHHH
T ss_pred             CCCCC-CCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC--chHHH
Confidence            77432 1111     1      01   12233358899999854  45443

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=96.85  E-value=0.075  Score=50.08  Aligned_cols=139  Identities=17%  Similarity=0.165  Sum_probs=85.7

Q ss_pred             HHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecC--HHHHHHHH
Q 020301          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYAR  182 (328)
Q Consensus       105 ~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G--~IG~~vA~  182 (328)
                      ++--+|+|.|.-+....+.  .+++=++.+.+++                     | .+.|.+|+++|=|  ++..+++.
T Consensus       140 A~~s~vPVINa~~~~~HPt--QaLaDl~Ti~E~~---------------------g-~l~gl~va~vGD~~~rva~Sl~~  195 (359)
T 2w37_A          140 ARDSGVPVWNGLTDEWHPT--QMLADFMTVKENF---------------------G-KLQGLTLTFMGDGRNNVANSLLV  195 (359)
T ss_dssp             HHHSSSCEEEEECSSCCHH--HHHHHHHHHHHHH---------------------S-CCTTCEEEEESCTTSHHHHHHHH
T ss_pred             HHhCCCCEEcCCCCCCCcc--HHHHHHHHHHHHh---------------------C-CcCCeEEEEECCCccchHHHHHH
Confidence            4455799999655433332  3333344333321                     1 4789999999996  99999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC-CC-----hh-----hh
Q 020301          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV-LD-----KT-----TY  251 (328)
Q Consensus       183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p-lt-----~~-----t~  251 (328)
                      .+ ..||++|.+..|..-...++..+...+.++..|.   ......+++|.++.||+|..-.= ..     ++     ..
T Consensus       196 ~~-~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~---~v~~~~d~~eav~~aDvvytd~w~smg~ee~~er~~~~~~  271 (359)
T 2w37_A          196 TG-AILGVNIHIVAPKALFPTEETQNIAKGFAEKSGA---KLVITDDLDEGLKGSNVVYTDVWVSMGESNWEERVKELTP  271 (359)
T ss_dssp             HH-HHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTC---CEEEESCHHHHHTTCSEEEECCSCCTTCTTHHHHHHHHGG
T ss_pred             HH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcCC---eEEEEeCHHHHhcCCCEEEEcccccccccchHHHHHHhhc
Confidence            86 5799999999885321111111100000111121   12234789999999999977322 11     11     12


Q ss_pred             ccccHHHHhcCC---CCcEEEEc
Q 020301          252 HLINKERLATMK---KEAILVNC  271 (328)
Q Consensus       252 ~li~~~~~~~mk---~ga~lIN~  271 (328)
                      .-++.+.++.+|   |+++|.-+
T Consensus       272 y~v~~ell~~ak~~~~dai~MHc  294 (359)
T 2w37_A          272 YQVNMEAMKKTGTPDDQLIFMHC  294 (359)
T ss_dssp             GCBCHHHHHTTCCCGGGCEEEEC
T ss_pred             cccCHHHHHhhCCCCCCEEEECC
Confidence            447899999999   99999887

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.83  E-value=0.0014  Score=63.37  Aligned_cols=96  Identities=18%  Similarity=0.206  Sum_probs=61.5

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC---HHHH-hhcCCEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVI  240 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDiV  240 (328)
                      +.++.|+|+|++|+.+|+.| +..|.+|++.|.++... +.        ++..|.... ....++   |+++ +.+||+|
T Consensus         4 ~~~viIiG~Gr~G~~va~~L-~~~g~~vvvId~d~~~v-~~--------~~~~g~~vi-~GDat~~~~L~~agi~~A~~v   72 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLL-LSSGVKMVVLDHDPDHI-ET--------LRKFGMKVF-YGDATRMDLLESAGAAKAEVL   72 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHH-HHTTCCEEEEECCHHHH-HH--------HHHTTCCCE-ESCTTCHHHHHHTTTTTCSEE
T ss_pred             CCeEEEECCCHHHHHHHHHH-HHCCCCEEEEECCHHHH-HH--------HHhCCCeEE-EcCCCCHHHHHhcCCCccCEE
Confidence            34699999999999999997 68899999999987542 11        122232211 111223   3333 6789999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      +++++...  .++.-....+.+.|...+|--++
T Consensus        73 iv~~~~~~--~n~~i~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           73 INAIDDPQ--TNLQLTEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             EECCSSHH--HHHHHHHHHHHHCTTCEEEEEES
T ss_pred             EECCCChH--HHHHHHHHHHHhCCCCeEEEEEC
Confidence            99998533  33333455666667755555444

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=96.83  E-value=0.043  Score=50.60  Aligned_cols=132  Identities=23%  Similarity=0.288  Sum_probs=85.6

Q ss_pred             HHhCCceEecCC-CCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecC---HHHHHH
Q 020301          105 ANKYGIAVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG---RIGSAY  180 (328)
Q Consensus       105 ~~~~gI~v~n~p-~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G---~IG~~v  180 (328)
                      ++--+|+|.|.- |....+.  .+++=++.+.+++                     | .+.|.+|+++|=|   ++.++.
T Consensus       110 a~~~~vPVINagdg~~~HPt--QaLaDl~Ti~e~~---------------------g-~l~glkva~vGD~~~~rva~Sl  165 (304)
T 3r7f_A          110 VSQVNIPILNAGDGCGQHPT--QSLLDLMTIYEEF---------------------N-TFKGLTVSIHGDIKHSRVARSN  165 (304)
T ss_dssp             HHHCSSCEEESCCTTSCCHH--HHHHHHHHHHHHH---------------------S-CCTTCEEEEESCCTTCHHHHHH
T ss_pred             HHhCCCCEEeCCCCCCcCcH--HHHHHHHHHHHHh---------------------C-CCCCCEEEEEcCCCCcchHHHH
Confidence            445679999985 4444333  2233333333221                     1 4789999999975   799999


Q ss_pred             HHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCCh---------h--
Q 020301          181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK---------T--  249 (328)
Q Consensus       181 A~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~---------~--  249 (328)
                      +..+ ..||++|.+..|..-.. +              ....+  ...+++|.++.||+|..-.--.+         +  
T Consensus       166 ~~~~-~~~G~~v~~~~P~~~~~-~--------------~~~~g--~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~  227 (304)
T 3r7f_A          166 AEVL-TRLGARVLFSGPSEWQD-E--------------ENTFG--TYVSMDEAVESSDVVMLLRIQNERHQSAVSQEGYL  227 (304)
T ss_dssp             HHHH-HHTTCEEEEESCGGGSC-T--------------TCSSC--EECCHHHHHHHCSEEEECCCCTTTCCSSCCSTTHH
T ss_pred             HHHH-HHcCCEEEEECCCccCc-c--------------hhhcC--ccCCHHHHhCCCCEEEeccchhhccccchhHHHHh
Confidence            9986 58999999988742110 0              00111  23689999999999977421111         1  


Q ss_pred             hhccccHHHHhcCCCCcEEEEcC---CCcccC
Q 020301          250 TYHLINKERLATMKKEAILVNCS---RGPVID  278 (328)
Q Consensus       250 t~~li~~~~~~~mk~ga~lIN~a---RG~~vd  278 (328)
                      ...-++.+.++.+|++++|.-+.   ||.=|+
T Consensus       228 ~~y~v~~~~l~~a~~~ai~mHclP~~Rg~EI~  259 (304)
T 3r7f_A          228 NKYGLTVERAERMKRHAIIMHPAPVNRGVEID  259 (304)
T ss_dssp             HHHSBCHHHHTTSCTTCEEECCSCCCBTTTBC
T ss_pred             CCCccCHHHHhhcCCCCEEECCCCCCCCceeC
Confidence            12347999999999999998874   665443

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.0024  Score=62.63  Aligned_cols=81  Identities=16%  Similarity=0.231  Sum_probs=50.6

Q ss_pred             cccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcc--ccccCCHHHHhhc
Q 020301          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLRE  236 (328)
Q Consensus       159 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~  236 (328)
                      .+..+.+++++|+|.|.+|+.+++.|++..|.+|.+++|+.... ++..+       ..+.....  .....++.++++.
T Consensus        17 ~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka-~~la~-------~~~~~~~~~D~~d~~~l~~~l~~   88 (467)
T 2axq_A           17 IEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANA-QALAK-------PSGSKAISLDVTDDSALDKVLAD   88 (467)
T ss_dssp             ------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHH-HHHHG-------GGTCEEEECCTTCHHHHHHHHHT
T ss_pred             cccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHH-HHHHH-------hcCCcEEEEecCCHHHHHHHHcC
Confidence            34578899999999999999999998543478999999986432 21111       11111000  0111256678899


Q ss_pred             CCEEEEcCCCC
Q 020301          237 ADVISLHPVLD  247 (328)
Q Consensus       237 aDiV~l~~plt  247 (328)
                      +|+|+.++|..
T Consensus        89 ~DvVIn~tp~~   99 (467)
T 2axq_A           89 NDVVISLIPYT   99 (467)
T ss_dssp             SSEEEECSCGG
T ss_pred             CCEEEECCchh
Confidence            99999999954

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=96.82  E-value=0.0015  Score=61.10  Aligned_cols=69  Identities=16%  Similarity=0.206  Sum_probs=46.2

Q ss_pred             CEEEEEecCHHHHH-HHH-HHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc--CCEE
Q 020301          166 QTVGVIGAGRIGSA-YAR-MMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (328)
Q Consensus       166 ~tvgIiG~G~IG~~-vA~-~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV  240 (328)
                      .++||||+|.||+. .++ .+.+.-++++. ++|+++... + ....+           .+...+.+++++++.  .|+|
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~-~-~~~~~-----------~~~~~~~~~~~ll~~~~~D~V   69 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-E-QAPIY-----------SHIHFTSDLDEVLNDPDVKLV   69 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGG-G-GSGGG-----------TTCEEESCTHHHHTCTTEEEE
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHH-H-HHHhc-----------CCCceECCHHHHhcCCCCCEE
Confidence            37999999999996 455 33233478877 788876532 1 11111           112345799999987  8999


Q ss_pred             EEcCCCC
Q 020301          241 SLHPVLD  247 (328)
Q Consensus       241 ~l~~plt  247 (328)
                      ++++|..
T Consensus        70 ~i~tp~~   76 (345)
T 3f4l_A           70 VVCTHAD   76 (345)
T ss_dssp             EECSCGG
T ss_pred             EEcCChH
Confidence            9999943

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.80  E-value=0.027  Score=51.89  Aligned_cols=103  Identities=17%  Similarity=0.216  Sum_probs=70.7

Q ss_pred             ccCCCEEEEEec---CHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301          162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (328)
Q Consensus       162 ~l~g~tvgIiG~---G~IG~~vA~~l~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (328)
                      .+.|.+|+++|=   |++.++++..+ ..| |++|.+..|..-...+..       ++..|   .......+++|.+++|
T Consensus       146 ~l~gl~va~vGD~~~~rva~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~-------~~~~g---~~~~~~~d~~eav~~a  214 (299)
T 1pg5_A          146 TIDGLVFALLGDLKYARTVNSLLRIL-TRFRPKLVYLISPQLLRARKEI-------LDELN---YPVKEVENPFEVINEV  214 (299)
T ss_dssp             CSTTCEEEEEECCSSCHHHHHHHHHG-GGSCCSEEEEECCGGGCCCHHH-------HTTCC---SCEEEESCGGGTGGGC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHH-HhCCCCEEEEECCchhcCCHHH-------HHHcC---CeEEEeCCHHHHhcCC
Confidence            478999999998   59999999986 689 999999988532111111       11112   1122346899999999


Q ss_pred             CEEEEcCCCCh------hh-----hccccHHHHhcCCCCcEEEEcC-CCc
Q 020301          238 DVISLHPVLDK------TT-----YHLINKERLATMKKEAILVNCS-RGP  275 (328)
Q Consensus       238 DiV~l~~plt~------~t-----~~li~~~~~~~mk~ga~lIN~a-RG~  275 (328)
                      |+|..-.=-.+      +.     ..-+|.+.++.+||+++|.-+. ||.
T Consensus       215 Dvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lPrg~  264 (299)
T 1pg5_A          215 DVLYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLPRVN  264 (299)
T ss_dssp             SEEEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCSCCSS
T ss_pred             CEEEeCCcccccccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCCCCCC
Confidence            99965443321      11     2447899999999999988773 443

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=96.80  E-value=0.0026  Score=58.40  Aligned_cols=106  Identities=10%  Similarity=0.073  Sum_probs=65.4

Q ss_pred             CCEEEEEec-CHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEE
Q 020301          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (328)
Q Consensus       165 g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  240 (328)
                      ..+++|+|+ |++|+..++.+ +.+|++++ .+||....                 ....+...+.+++++..  ..|++
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l-~~~g~~~V~~V~p~~~g-----------------~~~~G~~vy~sl~el~~~~~~D~v   68 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQA-IAYGTKMVGGVTPGKGG-----------------TTHLGLPVFNTVREAVAATGATAS   68 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTT-----------------CEETTEEEESSHHHHHHHHCCCEE
T ss_pred             CCEEEEECCCChHHHHHHHHH-HHCCCeEEEEeCCCccc-----------------ceeCCeeccCCHHHHhhcCCCCEE
Confidence            357999999 99999999987 45688844 55653210                 00112234578999998  89999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCcc
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMF  292 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~aL~~g~i~  292 (328)
                      ++++|. +....++ ++.+++=+ . .+|..+-|-- -+.+.|.++.++..+.
T Consensus        69 iI~tP~-~~~~~~~-~ea~~~Gi-~-~iVi~t~G~~~~~~~~l~~~A~~~gv~  117 (288)
T 2nu8_A           69 VIYVPA-PFCKDSI-LEAIDAGI-K-LIITITEGIPTLDMLTVKVKLDEAGVR  117 (288)
T ss_dssp             EECCCG-GGHHHHH-HHHHHTTC-S-EEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             EEecCH-HHHHHHH-HHHHHCCC-C-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            999993 2333333 33443222 2 2344544432 2445888888775543

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=96.76  E-value=0.0022  Score=57.43  Aligned_cols=81  Identities=17%  Similarity=0.171  Sum_probs=51.9

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      .+|+|+|+|+||+.+++.+...-+ ++.+ +|+.....                   .+...+.++++++ .+|+|+-+.
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~-eLva~~d~~~~~~-------------------~gv~v~~dl~~l~-~~DVvIDft   62 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGH-EIVGVIENTPKAT-------------------TPYQQYQHIADVK-GADVAIDFS   62 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEECSSCC---------------------CCSCBCSCTTTCT-TCSEEEECS
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCC-EEEEEEecCcccc-------------------CCCceeCCHHHHh-CCCEEEEeC
Confidence            479999999999999998743334 7654 78765320                   1122346888888 999987443


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      + ...+..     .+. ++.|.-+|....|
T Consensus        63 ~-p~a~~~-----~~~-l~~g~~vVigTTG   85 (243)
T 3qy9_A           63 N-PNLLFP-----LLD-EDFHLPLVVATTG   85 (243)
T ss_dssp             C-HHHHHH-----HHT-SCCCCCEEECCCS
T ss_pred             C-hHHHHH-----HHH-HhcCCceEeCCCC
Confidence            3 122222     233 6777767766666

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.75  E-value=0.018  Score=55.80  Aligned_cols=116  Identities=16%  Similarity=0.254  Sum_probs=72.6

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCC---------chhHHHHHHhhhhhhhhcCCCCCccccccCCH
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (328)
                      .++.|+|+.|.|+|++|+.+|+.| ...|++|+ +.|.+         ....+.++.+.++      ...........+.
T Consensus       231 ~~l~g~~vaVqGfGnVG~~~a~~L-~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g------~i~~y~~a~~i~~  303 (440)
T 3aog_A          231 LQVEGARVAIQGFGNVGNAAARAF-HDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFG------GVRGYPKAEPLPA  303 (440)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTS------SSTTCTTSEECCH
T ss_pred             CCccCCEEEEeccCHHHHHHHHHH-HHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcC------CcccCCCceEcCc
Confidence            468999999999999999999997 58899998 44442         1122222222111      1111100122355


Q ss_pred             HHHhh-cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020301          231 DEVLR-EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (328)
Q Consensus       231 ~ell~-~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i  291 (328)
                      ++++. .||+++-|..     .+.|+.+...+++ -.+++-.+-+++- .+|- +.|.+..|
T Consensus       304 ~ei~~~~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~t-~eA~-~iL~~~GI  357 (440)
T 3aog_A          304 ADFWGLPVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPTT-PAAD-DILLEKGV  357 (440)
T ss_dssp             HHHTTCCCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCBC-HHHH-HHHHHHTC
T ss_pred             hhhhcCCCcEEEecCC-----cCccchhhHHHcC-CcEEEecCccccC-HHHH-HHHHHCCC
Confidence            66654 7999998855     5667777777774 6688888888864 4443 44444434

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.75  E-value=0.0036  Score=54.96  Aligned_cols=90  Identities=11%  Similarity=0.177  Sum_probs=55.7

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC---HHHH-hhcCCEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVI  240 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDiV  240 (328)
                      .+++.|+|+|.+|+.+|+.| ...|. |+++|+++... +.        +. .+.... .....+   |+++ +.+||.|
T Consensus         9 ~~~viI~G~G~~G~~la~~L-~~~g~-v~vid~~~~~~-~~--------~~-~~~~~i-~gd~~~~~~l~~a~i~~ad~v   75 (234)
T 2aef_A            9 SRHVVICGWSESTLECLREL-RGSEV-FVLAEDENVRK-KV--------LR-SGANFV-HGDPTRVSDLEKANVRGARAV   75 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHS-TTSEE-EEEESCGGGHH-HH--------HH-TTCEEE-ESCTTCHHHHHHTTCTTCSEE
T ss_pred             CCEEEEECCChHHHHHHHHH-HhCCe-EEEEECCHHHH-HH--------Hh-cCCeEE-EcCCCCHHHHHhcCcchhcEE
Confidence            45799999999999999997 67888 99999876532 11        11 121111 111223   3334 7889999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEE
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILV  269 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lI  269 (328)
                      ++++|..  ..++.-....+.+.++..+|
T Consensus        76 i~~~~~d--~~n~~~~~~a~~~~~~~~ii  102 (234)
T 2aef_A           76 IVDLESD--SETIHCILGIRKIDESVRII  102 (234)
T ss_dssp             EECCSCH--HHHHHHHHHHHHHCSSSEEE
T ss_pred             EEcCCCc--HHHHHHHHHHHHHCCCCeEE
Confidence            9998843  23333344555666663443

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=96.74  E-value=0.21  Score=46.12  Aligned_cols=115  Identities=15%  Similarity=0.164  Sum_probs=73.3

Q ss_pred             ccC-CCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          162 LLK-GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       162 ~l~-g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      .+. |++|+++|= +++.++.+..+ ..||++|.+..|..-...+...+.-.+.++..|   .......++++.++.||+
T Consensus       142 ~l~~gl~va~vGD~~~va~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~~~~~~d~~eav~~aDv  217 (307)
T 3tpf_A          142 MQNGIAKVAFIGDSNNMCNSWLITA-AILGFEISIAMPKNYKISPEIWEFAMKQALISG---AKISLGYDKFEALKDKDV  217 (307)
T ss_dssp             CGGGCCEEEEESCSSHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CEEEEESCHHHHHTTCSE
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhcCCCE
Confidence            477 999999996 56788888876 579999999987532111111110000011112   122334699999999999


Q ss_pred             EEEcC--CCCh--h--------hhccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 020301          240 ISLHP--VLDK--T--------TYHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (328)
Q Consensus       240 V~l~~--plt~--~--------t~~li~~~~~~~mk~ga~lIN~a---RG~~vde~  280 (328)
                      |..-.  ....  +        ...-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       218 vyt~~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~lPa~Rg~EI~~e  273 (307)
T 3tpf_A          218 VITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEE  273 (307)
T ss_dssp             EEECCSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHH
T ss_pred             EEecCcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCCceeCHH
Confidence            97654  1111  1        12347999999999999999874   77666654

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=96.71  E-value=0.022  Score=53.81  Aligned_cols=140  Identities=16%  Similarity=0.156  Sum_probs=85.3

Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecC--HHHHHHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYA  181 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G--~IG~~vA  181 (328)
                      .|+--+|+|.|.-+....+.  .+++=++.+.+++                     | .+.|++|++||=|  ++..+++
T Consensus       143 lA~~s~vPVINa~~~~~HPt--QaLaDl~Ti~E~~---------------------G-~l~glkva~vGD~~nnva~Sl~  198 (365)
T 4amu_A          143 LVKYSGVPVWNGLTDDEHPT--QIIADFMTMKEKF---------------------G-NLKNKKIVFIGDYKNNVGVSTM  198 (365)
T ss_dssp             HHHHHCSCEEEEECSSCCHH--HHHHHHHHHHHHH---------------------S-SCTTCEEEEESSTTSHHHHHHH
T ss_pred             HHHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHh---------------------C-CCCCCEEEEECCCCcchHHHHH
Confidence            34556899999755433332  2333333333221                     1 3789999999988  7888999


Q ss_pred             HHHHhcCCcEEEEEcCCchhH--HHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC--CCCh--h---h--
Q 020301          182 RMMVEGFKMNLIYYDLYQATR--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP--VLDK--T---T--  250 (328)
Q Consensus       182 ~~l~~~fg~~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~--plt~--~---t--  250 (328)
                      ..+ ..||++|.+..|..-..  .++..+...+.++..|   .......++++.++.||+|..-+  ....  +   .  
T Consensus       199 ~~~-~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g---~~i~~~~d~~eav~~aDVVytd~W~smg~~~~~~~er~  274 (365)
T 4amu_A          199 IGA-AFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNG---GSLRFSTDKILAAQDADVIYTDVWVSLGEPFELFDKRI  274 (365)
T ss_dssp             HHH-HHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHS---CEEEEESCHHHHTTTCSEEEECCSCCTTCCHHHHHHHH
T ss_pred             HHH-HHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcC---CEEEEECCHHHHhcCCCEEEecccccCCchhhhHHHHH
Confidence            886 58999999998853221  1121110000111112   11223469999999999998632  2221  1   0  


Q ss_pred             ----hccccHHHHhcCCCCcEEEEc
Q 020301          251 ----YHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       251 ----~~li~~~~~~~mk~ga~lIN~  271 (328)
                          .--++.+.++.+||+++|.=+
T Consensus       275 ~~~~~y~vt~ell~~a~~dai~MHc  299 (365)
T 4amu_A          275 GELKNFQVDMNMIKAAKNDVIFLHC  299 (365)
T ss_dssp             HHHTTCCBCHHHHHHSCTTCEEEEC
T ss_pred             HHhcccccCHHHHHhcCCCcEEECC
Confidence                134799999999999999877

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=96.71  E-value=0.21  Score=46.44  Aligned_cols=115  Identities=17%  Similarity=0.125  Sum_probs=72.1

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .+.|.+|++||= +++.++.+..+ ..||++|.+..|..-...+...+.-.+.++..|   .......+++|.+++||+|
T Consensus       154 ~l~glkva~vGD~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~v~~~~d~~eav~~aDvv  229 (323)
T 3gd5_A          154 RLAGLKLAYVGDGNNVAHSLLLGC-AKVGMSIAVATPEGFTPDPAVSARASEIAGRTG---AEVQILRDPFEAARGAHIL  229 (323)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEE
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHHHHHcC---CeEEEECCHHHHhcCCCEE
Confidence            478999999996 57888888876 579999999887532111111110000001112   1122346899999999999


Q ss_pred             EEcCCCCh----h--------hhccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 020301          241 SLHPVLDK----T--------TYHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (328)
Q Consensus       241 ~l~~plt~----~--------t~~li~~~~~~~mk~ga~lIN~a---RG~~vde~  280 (328)
                      ..-.=-..    +        ...-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       230 yt~~wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHclPa~Rg~EI~~e  284 (323)
T 3gd5_A          230 YTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDE  284 (323)
T ss_dssp             EECCCC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             EEeceecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCCCCCCCceeCHH
Confidence            65431110    0        11347999999999999998873   77656544

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=96.70  E-value=0.007  Score=62.59  Aligned_cols=147  Identities=19%  Similarity=0.206  Sum_probs=92.6

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHh-hhh---hhhhcCCC--CCccccccCCHHHHhhcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT-AYG---QFLKANGE--QPVTWKRASSMDEVLREA  237 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~~-~~~---~~~~~~~~--~~~~~~~~~~l~ell~~a  237 (328)
                      ++|||||.|.||+.+|..++ ..|++|+.+|+++.....  +... .+.   ........  .........++++ ++.|
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a-~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~a  394 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFA-RVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE-LSTV  394 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGG-GGSC
T ss_pred             cEEEEEcccHHHHHHHHHHH-hCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHH-HhhC
Confidence            69999999999999999975 779999999998753211  1110 000   00011111  1111122334444 7899


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEE
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIV  317 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvil  317 (328)
                      |+|+=++|-+-+.+.-+-++.=+.++++++|-..+.+  +.-..|.++++. .=.-.++=.|.+-|  .-||.+   ||-
T Consensus       395 DlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~~-p~r~ig~HFfnP~~--~m~LVE---vi~  466 (742)
T 3zwc_A          395 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTDR-PQLVIGTHFFSPAH--VMRLLE---VIP  466 (742)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSSC-GGGEEEEECCSSTT--TCCEEE---EEE
T ss_pred             CEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcCC-ccccccccccCCCC--CCceEE---Eec
Confidence            9999999988888877767777779999988765444  566677777653 44556666664432  223433   455


Q ss_pred             cCCCC
Q 020301          318 VPHIA  322 (328)
Q Consensus       318 TPHia  322 (328)
                      +|+++
T Consensus       467 g~~Ts  471 (742)
T 3zwc_A          467 SRYSS  471 (742)
T ss_dssp             CSSCC
T ss_pred             CCCCC
Confidence            55543

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.66  E-value=0.01  Score=54.63  Aligned_cols=125  Identities=18%  Similarity=0.263  Sum_probs=71.3

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      +|+|||.|.+|..+|..|+ ..|.  +|..||+.+........+ .......-. .+.......+ .+.++.||+|+++.
T Consensus         2 kI~ViGaG~vG~~la~~l~-~~~~~~~v~L~D~~~~~~~g~~~d-l~~~~~~~~-~~~~i~~t~d-~~a~~~aDiVViaa   77 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCL-LNLDVDEIALVDIAEDLAVGEAMD-LAHAAAGID-KYPKIVGGAD-YSLLKGSEIIVVTA   77 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HHSCCSEEEEECSSHHHHHHHHHH-HHHHHHTTT-CCCEEEEESC-GGGGTTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHH-hCCCCCeEEEEECChHHHHHHHHH-HHhhhhhcC-CCCEEEEeCC-HHHhCCCCEEEECC
Confidence            7999999999999999874 4455  999999987542111111 000000000 1111221235 78899999999997


Q ss_pred             CCCh---hhh-ccc--cH-------HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH----cCCccEEE--Ee
Q 020301          245 VLDK---TTY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDEVALVEHLK----QNPMFRVG--LD  297 (328)
Q Consensus       245 plt~---~t~-~li--~~-------~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~----~g~i~gaa--lD  297 (328)
                      +...   +|+ .++  |.       +.+.+..|++++++++  ..+|.-..+-.=.    ..++.|.+  ||
T Consensus        78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~t~~~~k~~g~p~~rviG~gt~LD  147 (294)
T 1oju_A           78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMTYIMWKESGKPRNEVFGMGNQLD  147 (294)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHHHHHHHHSCCCTTSEEECSHHHH
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHHHHHHHHhcCCCHHHEeecccccH
Confidence            6321   111 111  11       2345567899999997  5666543332111    24566664  55

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.65  E-value=0.0044  Score=58.46  Aligned_cols=70  Identities=21%  Similarity=0.227  Sum_probs=47.1

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcc--ccccCCHHHHhhcCCEEEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLREADVISL  242 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~aDiV~l  242 (328)
                      .++|+|+|.|.+|+.+|+.|+ . ..+|.+.|++.... ++. ..        ......  .....++.++++++|+|+.
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~-~-~~~v~~~~~~~~~~-~~~-~~--------~~~~~~~d~~d~~~l~~~~~~~DvVi~   83 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLK-D-EFDVYIGDVNNENL-EKV-KE--------FATPLKVDASNFDKLVEVMKEFELVIG   83 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHT-T-TSEEEEEESCHHHH-HHH-TT--------TSEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEECCCHHHHHHHHHHh-c-CCCeEEEEcCHHHH-HHH-hc--------cCCcEEEecCCHHHHHHHHhCCCEEEE
Confidence            347999999999999999974 3 46888889876432 111 00        111111  1122457788999999999


Q ss_pred             cCCC
Q 020301          243 HPVL  246 (328)
Q Consensus       243 ~~pl  246 (328)
                      ++|.
T Consensus        84 ~~p~   87 (365)
T 3abi_A           84 ALPG   87 (365)
T ss_dssp             CCCG
T ss_pred             ecCC
Confidence            9994

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.64  E-value=0.0062  Score=56.73  Aligned_cols=68  Identities=12%  Similarity=0.168  Sum_probs=47.0

Q ss_pred             EEEEEecCHHHHH-HHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc--CCEEEE
Q 020301          167 TVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISL  242 (328)
Q Consensus       167 tvgIiG~G~IG~~-vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l  242 (328)
                      ++||||+|.||+. .+..+.+.=+++|. ++|+++.. .+++.+.|+       ..    ..+.+++++|+.  .|+|++
T Consensus        25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~-a~~~a~~~g-------~~----~~y~d~~ell~~~~iDaV~I   92 (350)
T 4had_A           25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTR-AREMADRFS-------VP----HAFGSYEEMLASDVIDAVYI   92 (350)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHH-HHHHHHHHT-------CS----EEESSHHHHHHCSSCSEEEE
T ss_pred             EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHH-HHHHHHHcC-------CC----eeeCCHHHHhcCCCCCEEEE
Confidence            7999999999986 46665333478877 57887643 233333332       11    235799999965  799999


Q ss_pred             cCCC
Q 020301          243 HPVL  246 (328)
Q Consensus       243 ~~pl  246 (328)
                      +.|.
T Consensus        93 ~tP~   96 (350)
T 4had_A           93 PLPT   96 (350)
T ss_dssp             CSCG
T ss_pred             eCCC
Confidence            9993

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.63  E-value=0.0059  Score=57.05  Aligned_cols=110  Identities=19%  Similarity=0.225  Sum_probs=62.0

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      -.+++|+|||.|.||+.+|..++ ..|.  ++..+|+.... .+...........-  .....  ...+..+.++.||+|
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~-~~~~~~el~l~D~~~~k-~~g~a~DL~~~~~~--~~~~~--i~~~~~~a~~~aDiV   80 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMV-LQGIAQEIGIVDIFKDK-TKGDAIDLEDALPF--TSPKK--IYSAEYSDAKDADLV   80 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSCHHH-HHHHHHHHHTTGGG--SCCCE--EEECCGGGGTTCSEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEeCChHH-HHHHHhhHhhhhhh--cCCcE--EEECcHHHhcCCCEE
Confidence            35678999999999999999874 3344  89999997542 22111111000000  00111  112345678999999


Q ss_pred             EEcCCCC--h-hhh-ccc--c-------HHHHhcCCCCcEEEEcCCCcccCHH
Q 020301          241 SLHPVLD--K-TTY-HLI--N-------KERLATMKKEAILVNCSRGPVIDEV  280 (328)
Q Consensus       241 ~l~~plt--~-~t~-~li--~-------~~~~~~mk~ga~lIN~aRG~~vde~  280 (328)
                      +++....  | +|+ .++  |       .+.+.+..|++++++++  ..+|.-
T Consensus        81 vi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt--NPvdi~  131 (326)
T 3vku_A           81 VITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA--NPVDIL  131 (326)
T ss_dssp             EECCCCC----------------CHHHHHHHHHTTTCCSEEEECS--SSHHHH
T ss_pred             EECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc--CchHHH
Confidence            9987532  1 122 222  1       12344456899999996  455543

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.60  E-value=0.012  Score=57.28  Aligned_cols=104  Identities=15%  Similarity=0.203  Sum_probs=71.9

Q ss_pred             ccccCCCEEEEEecC----------HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC
Q 020301          160 GNLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G----------~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (328)
                      +..+.|++|+|+|+.          .-...+++.| ...|++|.+|||...+...   ..|         .  ......+
T Consensus       317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L-~~~g~~v~~~DP~~~~~~~---~~~---------~--~~~~~~~  381 (446)
T 4a7p_A          317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAAL-QDAGATVKAYDPEGVEQAS---KML---------T--DVEFVEN  381 (446)
T ss_dssp             TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHH-HHTSCEEEEECSSCHHHHG---GGC---------S--SCCBCSC
T ss_pred             cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHH-HHCCCEEEEECCCCCHhHH---Hhc---------C--CceEecC
Confidence            346899999999997          6678999997 6899999999998743211   111         0  1223468


Q ss_pred             HHHHhhcCCEEEEcCCCChhhhccccHHHH-hcCCCCcEEEEcCCCcccCHHHHH
Q 020301          230 MDEVLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNCSRGPVIDEVALV  283 (328)
Q Consensus       230 l~ell~~aDiV~l~~plt~~t~~li~~~~~-~~mk~ga~lIN~aRG~~vde~aL~  283 (328)
                      +++.++.||.|+++.+ -++.+. ++-+.+ +.|+ +.+++++ |+ +.|.+.+.
T Consensus       382 ~~~~~~~ad~vvi~t~-~~~f~~-~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~~  431 (446)
T 4a7p_A          382 PYAAADGADALVIVTE-WDAFRA-LDLTRIKNSLK-SPVLVDL-RN-IYPPAELE  431 (446)
T ss_dssp             HHHHHTTBSEEEECSC-CTTTTS-CCHHHHHTTBS-SCBEECS-SC-CSCHHHHH
T ss_pred             hhHHhcCCCEEEEeeC-CHHhhc-CCHHHHHHhcC-CCEEEEC-CC-CCCHHHHH
Confidence            8999999999999977 234444 455544 4565 5678886 54 56766553

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.60  E-value=0.012  Score=54.68  Aligned_cols=114  Identities=20%  Similarity=0.247  Sum_probs=64.0

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCc-hhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      ..++|+|||.|.+|..+|..++ ..|. +|..||+.+ ....+.............. .........+ .+.++.||+|+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~-~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~-~~~~i~~t~d-~~a~~~aDvVI   83 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLA-QKELADVVLVDIPQLENPTKGKALDMLEASPVQG-FDANIIGTSD-YADTADSDVVV   83 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHT-CCCCEEEESC-GGGGTTCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeccchHHHHHHhhhhHHHhhhhcc-CCCEEEEcCC-HHHhCCCCEEE
Confidence            4678999999999999999874 5677 999999984 2222221111100000000 0011111123 45689999999


Q ss_pred             EcCCC--Ch-hhh-ccc--c----HH---HHhcCCCCcEEEEcCCCcccCHHHH
Q 020301          242 LHPVL--DK-TTY-HLI--N----KE---RLATMKKEAILVNCSRGPVIDEVAL  282 (328)
Q Consensus       242 l~~pl--t~-~t~-~li--~----~~---~~~~mk~ga~lIN~aRG~~vde~aL  282 (328)
                      ++...  .| +|+ .++  |    ++   .+....|++++++++  ..+|.-..
T Consensus        84 iaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs--NPvd~~t~  135 (315)
T 3tl2_A           84 ITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT--NPVDAMTY  135 (315)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHHH
T ss_pred             EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC--ChHHHHHH
Confidence            99742  22 111 122  1    11   233346899999997  44554433

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.58  E-value=0.014  Score=53.62  Aligned_cols=105  Identities=16%  Similarity=0.187  Sum_probs=59.4

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      ..+|+|||.|.+|..+|..|+ .-|.  +|..+|++.........+ ......-.+  ........+. +.++.||+|++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~-~~g~~~~V~l~d~~~~~~~~~~~~-~~~~~~~~~--~~~v~~~~~~-~~~~~aD~Vii   81 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAA-QRGIAREIVLEDIAKERVEAEVLD-MQHGSSFYP--TVSIDGSDDP-EICRDADMVVI   81 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HTTCCSEEEEECSSHHHHHHHHHH-HHHTGGGST--TCEEEEESCG-GGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCChhHHHHHHHH-HHhhhhhcC--CeEEEeCCCH-HHhCCCCEEEE
Confidence            468999999999999999874 5577  999999986322100011 000000000  1111111243 46789999999


Q ss_pred             cCCCChhhhc------------ccc--HHHHhcCCCCcEEEEcCCCc
Q 020301          243 HPVLDKTTYH------------LIN--KERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       243 ~~plt~~t~~------------li~--~~~~~~mk~ga~lIN~aRG~  275 (328)
                      +++.. ...+            ++.  -+.+....+++++|+++-|-
T Consensus        82 ~v~~~-~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~  127 (319)
T 1lld_A           82 TAGPR-QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPV  127 (319)
T ss_dssp             CCCCC-CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred             CCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCch
Confidence            99532 2111            010  11222236889999987654

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.55  E-value=0.0015  Score=61.95  Aligned_cols=39  Identities=26%  Similarity=0.486  Sum_probs=34.9

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .+.|++|+|+|.|.+|+.+++.+ +.+|++|+++|+++..
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa-~~lG~~viv~d~~~~~   47 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSA-QKMGYKVVVLDPSEDC   47 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCC
Confidence            46799999999999999999995 7999999999987653

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=96.54  E-value=0.0051  Score=58.83  Aligned_cols=87  Identities=16%  Similarity=0.118  Sum_probs=65.7

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      -.++-|+|.|.+|+.+|+.+ +.+|++|+++|+++.-                          .+ .+-+..+|-++...
T Consensus       204 ~~rL~IfGAGhva~ala~~a-~~lg~~V~v~D~R~~~--------------------------~~-~~~fp~a~~~~~~~  255 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQG-AFLGYRVTVCDARPVF--------------------------AT-TARFPTADEVVVDW  255 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHH-HHTTCEEEEEESCTTT--------------------------SC-TTTCSSSSEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCchhh--------------------------cc-cccCCCceEEEeCC
Confidence            45899999999999999995 7999999999987531                          01 12245666555554


Q ss_pred             CCChhhhccccHHHHhc------CCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          245 VLDKTTYHLINKERLAT------MKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       245 plt~~t~~li~~~~~~~------mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      |          .+.+..      +.+++++|=..++.-.|...|..+|+++
T Consensus       256 p----------~~~~~~~~~~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~  296 (386)
T 2we8_A          256 P----------HRYLAAQAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLP  296 (386)
T ss_dssp             H----------HHHHHHHHHHTCCCTTCEEEECCCCHHHHHHHHHHHTTSS
T ss_pred             h----------HHHHHhhccccCCCCCcEEEEEECChHhHHHHHHHHhcCC
Confidence            4          122222      6788999999999999999999999886

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=96.53  E-value=0.32  Score=45.84  Aligned_cols=141  Identities=14%  Similarity=0.089  Sum_probs=82.7

Q ss_pred             HHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecC--HHHHHHHH
Q 020301          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYAR  182 (328)
Q Consensus       105 ~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G--~IG~~vA~  182 (328)
                      ++--+|+|.|.-|....+.  .+++=++.+.++.                    .+..+.|.+|++||=|  ++.++.+.
T Consensus       143 a~~s~vPVING~g~~~HPt--QaL~Dl~Ti~e~~--------------------~~~~l~gl~ia~vGD~~~~va~S~~~  200 (358)
T 4h31_A          143 GAFAGVPVWNGLTDEFHPT--QILADFLTMLEHS--------------------QGKALADIQFAYLGDARNNVGNSLMV  200 (358)
T ss_dssp             HHHSSSCEEESCCSSCCHH--HHHHHHHHHHHTT--------------------TTCCGGGCEEEEESCTTSHHHHHHHH
T ss_pred             hhhccCceECCCCcCCCch--HHHHHHHHHHHHh--------------------cCCCcCceEEEecCCCCcccchHHHH
Confidence            4556799999555443333  2333333333211                    1246889999999954  79999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC----CChhh--------
Q 020301          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV----LDKTT--------  250 (328)
Q Consensus       183 ~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p----lt~~t--------  250 (328)
                      .+ ..||++|.+..|..-...++..+.....+...|   .......+++|.++.||+|..-.=    ..++.        
T Consensus       201 ~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g---~~v~~~~d~~eav~~aDvvyt~~w~s~~~~~~~~~~~~~~~  276 (358)
T 4h31_A          201 GA-AKMGMDIRLVGPQAYWPDEELVAACQAIAKQTG---GKITLTENVAEGVQGCDFLYTDVWVSMGESPEAWDERVALM  276 (358)
T ss_dssp             HH-HHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHT---CEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHH
T ss_pred             HH-HhcCceEEEeCCcccCCCHHHHHHHHHHHHHcC---CcceeccCHHHHhccCcEEEEEEEEEcccCchhHHHHHHHH
Confidence            86 689999999987532111111110000111112   122234689999999999974321    11111        


Q ss_pred             -hccccHHHHhcC-CCCcEEEEc
Q 020301          251 -YHLINKERLATM-KKEAILVNC  271 (328)
Q Consensus       251 -~~li~~~~~~~m-k~ga~lIN~  271 (328)
                       ..-++.+.++++ ||+++|.-+
T Consensus       277 ~~y~v~~~~l~~~ak~~~i~mH~  299 (358)
T 4h31_A          277 KPYQVNMNVLKQTGNPNVKFMHC  299 (358)
T ss_dssp             GGGCBCHHHHHHTTCTTCEEEEC
T ss_pred             hCcccCHHHHHhcCCCCcEEECC
Confidence             123688888864 789988865

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=96.53  E-value=0.0056  Score=56.84  Aligned_cols=68  Identities=15%  Similarity=0.186  Sum_probs=47.2

Q ss_pred             CEEEEEecCHHHH-HHHHHHHhcCCcEE-EEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEE
Q 020301          166 QTVGVIGAGRIGS-AYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~-~vA~~l~~~fg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  241 (328)
                      .++||||+|.+|. .+++.+ +.-++++ .++|+++... +++.+.|       +    ....+.+++++++  +.|+|+
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l-~~~~~~lvav~d~~~~~~-~~~a~~~-------~----~~~~~~~~~~ll~~~~~D~V~   71 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQL-IDAGAELAGVFESDSDNR-AKFTSLF-------P----SVPFAASAEQLITDASIDLIA   71 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHH-HHTTCEEEEEECSCTTSC-HHHHHHS-------T----TCCBCSCHHHHHTCTTCCEEE
T ss_pred             cEEEEECCChHHHHHhhhhh-cCCCcEEEEEeCCCHHHH-HHHHHhc-------C----CCcccCCHHHHhhCCCCCEEE
Confidence            4799999999996 677776 4458886 5788876432 2222222       1    1123579999997  689999


Q ss_pred             EcCCC
Q 020301          242 LHPVL  246 (328)
Q Consensus       242 l~~pl  246 (328)
                      ++.|.
T Consensus        72 i~tp~   76 (336)
T 2p2s_A           72 CAVIP   76 (336)
T ss_dssp             ECSCG
T ss_pred             EeCCh
Confidence            99994

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=96.53  E-value=0.23  Score=46.25  Aligned_cols=155  Identities=15%  Similarity=0.135  Sum_probs=91.2

Q ss_pred             HHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecC--HHHHHHHH
Q 020301          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYAR  182 (328)
Q Consensus       105 ~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G--~IG~~vA~  182 (328)
                      ++--+|+|.|.-.....+.  .+++=++.+.+++..      .+    +     ....+.|.+|+++|=|  ++.++++.
T Consensus       118 A~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~g~------~~----~-----~~~~l~gl~va~vGD~~~~va~Sl~~  180 (328)
T 3grf_A          118 AQHASVPCINALDDFGHPL--QMVCDFMTIKEKFTA------AG----E-----FSNGFKGIKFAYCGDSMNNVTYDLMR  180 (328)
T ss_dssp             HHHCSSCEEESSCSSCCHH--HHHHHHHHHHHHHHH------TT----C-----CTTTGGGCCEEEESCCSSHHHHHHHH
T ss_pred             HHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHhCC------cc----c-----cccccCCcEEEEeCCCCcchHHHHHH
Confidence            4456799999755433332  334444444443210      00    0     1135899999999986  88889998


Q ss_pred             HHHhcCCcEEEEEcCCchh--HHHHHHhhhhhhhhc--CCCCCccccccCCHHHHhhcCCEEEEc----CCCChh-----
Q 020301          183 MMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKA--NGEQPVTWKRASSMDEVLREADVISLH----PVLDKT-----  249 (328)
Q Consensus       183 ~l~~~fg~~V~~~d~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~ell~~aDiV~l~----~plt~~-----  249 (328)
                      .+ ..||++|.+..|..-.  ..++..+...+.++.  .|   .......++++.++.||+|..-    +-.-++     
T Consensus       181 ~~-~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g---~~v~~~~d~~eav~~aDvvytd~W~sm~iq~er~~~~  256 (328)
T 3grf_A          181 GC-ALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTG---GSIKIFHDCKKGCEGVDVVYTDSWMSYHITKEQKEAR  256 (328)
T ss_dssp             HH-HHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCC---CEEEEESSHHHHHTTCSEEEECCCC--------CCTH
T ss_pred             HH-HHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCC---CeEEEEcCHHHHhcCCCEEEecCccccCCcHHHHHHH
Confidence            86 5799999999875322  111111100000111  12   1223347999999999999753    220111     


Q ss_pred             ----hhccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 020301          250 ----TYHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (328)
Q Consensus       250 ----t~~li~~~~~~~mk~ga~lIN~a---RG~~vde~  280 (328)
                          ...-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       257 ~~~~~~y~vt~~~l~~a~~~ai~mH~lPa~Rg~EI~~e  294 (328)
T 3grf_A          257 LKVLTPFQVDDAVMAVTSKRSIFMNCLPATRGEEQTAS  294 (328)
T ss_dssp             HHHHGGGCBCHHHHTTSCTTCEEEECSCCCTTTTBCHH
T ss_pred             HHHhcCCCCCHHHHHhcCCCCEEECCCCCCCCCccCHH
Confidence                12347999999999999998874   77656544

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=96.50  E-value=0.34  Score=45.53  Aligned_cols=114  Identities=12%  Similarity=0.156  Sum_probs=71.6

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .+.|.+|++||= +++..+++..+ ..||++|.+..|..-...+...+.-.+.++..|   .......+++ .++++|+|
T Consensus       150 ~l~glkva~vGD~~rva~Sl~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~-av~~aDVV  224 (355)
T 4a8p_A          150 KLEDCKVVFVGDATQVCFSLGLIT-TKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSG---GSFLVTDDAS-SVEGADFL  224 (355)
T ss_dssp             CGGGCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHS---CEEEEECCGG-GGTTCSEE
T ss_pred             CCCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC---CeEEEECCHH-HHcCCCEE
Confidence            588999999996 67888888886 589999999987532111111110000011112   1122346889 99999999


Q ss_pred             EEcC----CCC----hh----h--hccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 020301          241 SLHP----VLD----KT----T--YHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (328)
Q Consensus       241 ~l~~----plt----~~----t--~~li~~~~~~~mk~ga~lIN~a---RG~~vde~  280 (328)
                      ..-+    ...    ++    .  .--++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       225 ytd~w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~e  281 (355)
T 4a8p_A          225 YTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDE  281 (355)
T ss_dssp             EECCSSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECSCCCBTTTBCHH
T ss_pred             EecccccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCCCCCCCCeeCHH
Confidence            8632    110    11    1  1347899999999999998874   77666544

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=96.50  E-value=0.0066  Score=56.79  Aligned_cols=68  Identities=15%  Similarity=0.167  Sum_probs=47.4

Q ss_pred             CEEEEEecCHHHHH-HHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc--CCEEE
Q 020301          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~~-vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~  241 (328)
                      .++||||+|.||+. .++.+.+.-+++|. ++|+++....    +.+           .+...+.++++++..  .|+|+
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~----~~~-----------~~~~~~~~~~~ll~~~~vD~V~   72 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH----ADW-----------PAIPVVSDPQMLFNDPSIDLIV   72 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH----TTC-----------SSCCEESCHHHHHHCSSCCEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH----hhC-----------CCCceECCHHHHhcCCCCCEEE
Confidence            47999999999997 77776333378876 6788764321    000           112345799999986  89999


Q ss_pred             EcCCCCh
Q 020301          242 LHPVLDK  248 (328)
Q Consensus       242 l~~plt~  248 (328)
                      +|.|...
T Consensus        73 i~tp~~~   79 (352)
T 3kux_A           73 IPTPNDT   79 (352)
T ss_dssp             ECSCTTT
T ss_pred             EeCChHH
Confidence            9999543

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.50  E-value=0.0018  Score=58.24  Aligned_cols=95  Identities=20%  Similarity=0.200  Sum_probs=61.4

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch------------------hHHHHHHhhhhhhhhcCC-CC
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANG-EQ  220 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~-~~  220 (328)
                      ..|.+++|.|+|.|.+|..+|+.|+ ..|. ++..+|+..-                  .+.+...+.    +.+.. ..
T Consensus        24 ~~l~~~~VlvvG~GglG~~va~~La-~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~----l~~~np~~   98 (251)
T 1zud_1           24 QKLLDSQVLIIGLGGLGTPAALYLA-GAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQR----LTQLNPDI   98 (251)
T ss_dssp             HHHHTCEEEEECCSTTHHHHHHHHH-HTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHH----HHHHCTTS
T ss_pred             HHHhcCcEEEEccCHHHHHHHHHHH-HcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHH----HHHHCCCC
Confidence            4689999999999999999999984 6776 7888876531                  111111111    00000 00


Q ss_pred             Ccccc----ccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhc
Q 020301          221 PVTWK----RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (328)
Q Consensus       221 ~~~~~----~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~  261 (328)
                      .....    ...+++++++++|+|+.+.. +.+++.++++...+.
T Consensus        99 ~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~  142 (251)
T 1zud_1           99 QLTALQQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL  142 (251)
T ss_dssp             EEEEECSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT
T ss_pred             EEEEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh
Confidence            00000    01246678999999999987 778899998887764

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=96.47  E-value=0.0046  Score=60.68  Aligned_cols=127  Identities=13%  Similarity=0.211  Sum_probs=72.6

Q ss_pred             CCEEEEEecCHH-HHHHHHHHHh---cC-CcEEEEEcCCchhHHHHHHhhhhhhh-hcCCCCCccccccCCHHHHhhcCC
Q 020301          165 GQTVGVIGAGRI-GSAYARMMVE---GF-KMNLIYYDLYQATRLEKFVTAYGQFL-KANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       165 g~tvgIiG~G~I-G~~vA~~l~~---~f-g~~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      ..+|+|||.|.. |.++|..|++   ++ +-+|..||+.... .+...+ ..+.. ...+ .+.......++++.++.||
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~-~~~~~~-~~~~~l~~~~-~~~~I~~t~D~~eal~~AD  104 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKER-QDRIAG-ACDVFIREKA-PDIEFAATTDPEEAFTDVD  104 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHH-HHHHHH-HHHHHHHHHC-TTSEEEEESCHHHHHSSCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHH-HHHHHH-HHHHHhccCC-CCCEEEEECCHHHHHcCCC
Confidence            458999999998 6667755543   45 6689999998643 221111 11111 1111 1222223358889999999


Q ss_pred             EEEEcCCCChh---hh--------c--------------------ccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 020301          239 VISLHPVLDKT---TY--------H--------------------LIN--KERLATMKKEAILVNCSRGPVIDEVALVEH  285 (328)
Q Consensus       239 iV~l~~plt~~---t~--------~--------------------li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~a  285 (328)
                      +|++++|....   ++        +                    ++-  .+.+....|++++||++-.-=+-..++.+.
T Consensus       105 ~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~  184 (472)
T 1u8x_X          105 FVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRL  184 (472)
T ss_dssp             EEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHH
T ss_pred             EEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Confidence            99999985211   11        0                    110  123334458999999977553444444444


Q ss_pred             HHcCCccEE
Q 020301          286 LKQNPMFRV  294 (328)
Q Consensus       286 L~~g~i~ga  294 (328)
                      ....++.|.
T Consensus       185 ~p~~rViG~  193 (472)
T 1u8x_X          185 RPNSKILNI  193 (472)
T ss_dssp             STTCCEEEC
T ss_pred             CCCCCEEEe
Confidence            333355555

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=96.45  E-value=0.29  Score=45.70  Aligned_cols=150  Identities=15%  Similarity=0.134  Sum_probs=88.0

Q ss_pred             HHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEec-CHHHHHHHHH
Q 020301          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYARM  183 (328)
Q Consensus       105 ~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~-G~IG~~vA~~  183 (328)
                      ++--+|+|.|.-+....+.  .+++=++.+.++++                   .|..+.|.+|++||= +++..+++..
T Consensus       136 A~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~~-------------------~G~~l~glkva~vGD~~rva~Sl~~~  194 (339)
T 4a8t_A          136 ANCATIPVINGMSDYNHPT--QELGDLCTMVEHLP-------------------EGKKLEDCKVVFVGDATQVCFSLGLI  194 (339)
T ss_dssp             HHHCSSCEEECCCSSCCHH--HHHHHHHHHHHTCC-------------------TTCCGGGCEEEEESSCCHHHHHHHHH
T ss_pred             HHhCCCCEEECCCCCcCcH--HHHHHHHHHHHHhh-------------------cCCCCCCCEEEEECCCchhHHHHHHH
Confidence            4556799999865433322  23333333332210                   022588999999996 6788888888


Q ss_pred             HHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC--CC--Ch----h----h-
Q 020301          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP--VL--DK----T----T-  250 (328)
Q Consensus       184 l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~--pl--t~----~----t-  250 (328)
                      + ..||++|.+..|..-...+...+.-.+.++..|   .......+++ .+++||+|..-+  ..  ..    +    . 
T Consensus       195 ~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~v~~~~d~~-av~~aDvvytd~w~smg~~~~~~~er~~~~~  269 (339)
T 4a8t_A          195 T-TKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSG---GSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFY  269 (339)
T ss_dssp             H-HHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHC---CEEEEECCGG-GGTTCSEEEECCSSCCTTSCCCHHHHHHHHT
T ss_pred             H-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CEEEEECChh-HHcCCCEEEecCcccCCchhhhhHHHHHHhc
Confidence            6 589999999987532111111110000011112   1122346889 999999998633  11  11    1    1 


Q ss_pred             -hccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 020301          251 -YHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (328)
Q Consensus       251 -~~li~~~~~~~mk~ga~lIN~a---RG~~vde~  280 (328)
                       ..-++.+.++++|++++|.-+.   ||.=|+.+
T Consensus       270 ~~y~vt~ell~~ak~dai~mHcLPa~Rg~EIt~e  303 (339)
T 4a8t_A          270 PKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDE  303 (339)
T ss_dssp             TTTCBCHHHHHHHCTTCEEEECSCCCBTTTBCHH
T ss_pred             cccccCHHHHHhcCCCcEEECCCCCCCCCeeCHH
Confidence             1447899999999999998874   67656554

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=96.43  E-value=0.0048  Score=58.02  Aligned_cols=67  Identities=10%  Similarity=0.194  Sum_probs=47.1

Q ss_pred             CEEEEEecCHHHHH-HHHHHHhcC-CcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEE
Q 020301          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (328)
Q Consensus       166 ~tvgIiG~G~IG~~-vA~~l~~~f-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  240 (328)
                      .++||||+|.||+. .++.+ +.. +++|. ++|+++....    +.|       +    +...+.+++++++  +.|+|
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~~~~----~~~-------~----~~~~~~~~~~ll~~~~vD~V   69 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLL-DVLDEYQISKIMTSRTEEVK----RDF-------P----DAEVVHELEEITNDPAIELV   69 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHH-TTCTTEEEEEEECSCHHHHH----HHC-------T----TSEEESSTHHHHTCTTCCEE
T ss_pred             ceEEEEccCHHHHHHHHHHH-hhCCCeEEEEEEcCCHHHHH----hhC-------C----CCceECCHHHHhcCCCCCEE
Confidence            47999999999997 67765 444 78875 6688764311    111       1    1224579999998  78999


Q ss_pred             EEcCCCCh
Q 020301          241 SLHPVLDK  248 (328)
Q Consensus       241 ~l~~plt~  248 (328)
                      ++|.|...
T Consensus        70 ~i~tp~~~   77 (358)
T 3gdo_A           70 IVTTPSGL   77 (358)
T ss_dssp             EECSCTTT
T ss_pred             EEcCCcHH
Confidence            99999543

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.42  E-value=0.015  Score=53.99  Aligned_cols=110  Identities=15%  Similarity=0.202  Sum_probs=62.0

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .+|+|||.|.||..+|..++ ..|.  +|..+|+..... +.............+. .... ...+..+.++.||+|+++
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~-~~~~~~el~l~D~~~~k~-~g~a~DL~~~~~~~~~-~~~v-~~~~~~~a~~~aDvVii~   76 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVA-RQDVAKEVVMVDIKDGMP-QGKALDMRESSPIHGF-DTRV-TGTNDYGPTEDSDVCIIT   76 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHTCSSEEEEECSSTTHH-HHHHHHHHHHHHHHTC-CCEE-EEESSSGGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCchHHH-HHHHHHHhccccccCC-CcEE-EECCCHHHhCCCCEEEEC
Confidence            37999999999999999874 3344  999999987432 2111111000000000 0111 112446789999999999


Q ss_pred             CCCChhhhc-----cc--c-------HHHHhcCCCCcEEEEcCCCcccCHHHH
Q 020301          244 PVLDKTTYH-----LI--N-------KERLATMKKEAILVNCSRGPVIDEVAL  282 (328)
Q Consensus       244 ~plt~~t~~-----li--~-------~~~~~~mk~ga~lIN~aRG~~vde~aL  282 (328)
                      .+.. ...+     ++  |       .+.+....|+++++|++  ..+|.-..
T Consensus        77 ag~~-~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~t~  126 (314)
T 3nep_X           77 AGLP-RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA--NPLDVMTY  126 (314)
T ss_dssp             CCC--------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC--SSHHHHHH
T ss_pred             CCCC-CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC--CchhHHHH
Confidence            8643 2222     11  1       12344556899999997  45554433

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.41  E-value=0.019  Score=53.21  Aligned_cols=123  Identities=20%  Similarity=0.215  Sum_probs=68.4

Q ss_pred             CCEEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      ..+|+|||.|.+|..+|..++. ++.-+|..||..... .+.............+ ...... . +..+.++.||+|+++
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~-~~g~~~dl~~~~~~~~-~~~~v~-~-~~~~a~~~aDvVvi~   81 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEK-VRGDVMDLKHATPYSP-TTVRVK-A-GEYSDCHDADLVVIC   81 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHH-HHHHHHHHHHHGGGSS-SCCEEE-E-CCGGGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhH-hhhhhhhHHhhhhhcC-CCeEEE-e-CCHHHhCCCCEEEEC
Confidence            4689999999999999988753 233489999987532 2221111111000000 111111 1 346779999999999


Q ss_pred             CCCChhhhc------------ccc--HHHHhcCCCCcEEEEcCCCcccCH--HHHHHH--HHcCCccEE
Q 020301          244 PVLDKTTYH------------LIN--KERLATMKKEAILVNCSRGPVIDE--VALVEH--LKQNPMFRV  294 (328)
Q Consensus       244 ~plt~~t~~------------li~--~~~~~~mk~ga~lIN~aRG~~vde--~aL~~a--L~~g~i~ga  294 (328)
                      .+... ..+            ++-  .+.+....|++++||++  ..+|.  .++.+.  +...++.|.
T Consensus        82 ag~~~-~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~t~~~~k~~~~p~~rviG~  147 (317)
T 3d0o_A           82 AGAAQ-KPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT--NPVDILAYATWKFSGLPKERVIGS  147 (317)
T ss_dssp             CCCCC-CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCC-CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CcHHHHHHHHHHHhCCCHHHEEec
Confidence            87432 221            110  12333347899999986  44443  333333  333356666

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.40  E-value=0.0086  Score=55.93  Aligned_cols=108  Identities=20%  Similarity=0.246  Sum_probs=61.8

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      .++|+|||.|.||..+|..|+ ..|.  +|..+|+..... +...........-.+ .....  ..+..+.++.||+|++
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~-~~~~~~~l~l~D~~~~k~-~g~a~DL~~~~~~~~-~~v~i--~~~~~~a~~~aDvVvi   79 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALI-NQGITDELVVIDVNKEKA-MGDVMDLNHGKAFAP-QPVKT--SYGTYEDCKDADIVCI   79 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSCHHHH-HHHHHHHHHTGGGSS-SCCEE--EEECGGGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCCceEEEEecchHHH-HHHHHHHHhcccccc-CCeEE--EeCcHHHhCCCCEEEE
Confidence            568999999999999999874 4455  999999975432 221110100000000 01111  1223467899999999


Q ss_pred             cCCCChhhhcc-----c--c----H---HHHhcCCCCcEEEEcCCCcccCHH
Q 020301          243 HPVLDKTTYHL-----I--N----K---ERLATMKKEAILVNCSRGPVIDEV  280 (328)
Q Consensus       243 ~~plt~~t~~l-----i--~----~---~~~~~mk~ga~lIN~aRG~~vde~  280 (328)
                      +.+. +...++     +  |    +   +.+....|++++++++-  .+|.-
T Consensus        80 ~ag~-p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN--Pvd~~  128 (326)
T 3pqe_A           80 CAGA-NQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN--PVDIL  128 (326)
T ss_dssp             CCSC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS--SHHHH
T ss_pred             eccc-CCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC--hHHHH
Confidence            9863 222221     1  1    1   23334568999999974  45543

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.39  E-value=0.0095  Score=55.33  Aligned_cols=123  Identities=19%  Similarity=0.219  Sum_probs=65.6

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .+|+|||.|.+|..+|..++ ..|.  +|..+|..... .+.....+.... . -....... ..+ .+.++.||+|+++
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~-~~~~~~ev~L~Di~~~~-~~g~~~dl~~~~-~-~~~~~~i~-~~~-~~a~~~aDvVii~   81 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMA-LRQTANELVLIDVFKEK-AIGEAMDINHGL-P-FMGQMSLY-AGD-YSDVKDCDVIVVT   81 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-HTTCSSEEEEECCC----CCHHHHHHTTSC-C-CTTCEEEC---C-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCChHH-HHHHHHHHHHhH-H-hcCCeEEE-ECC-HHHhCCCCEEEEc
Confidence            57999999999999999875 4465  99999987532 111111111000 0 00011111 123 5668999999999


Q ss_pred             CCCChhhhcc-------cc----H---HHHhcCCCCcEEEEcCCCcccCHH--HHHHH--HHcCCccEEE--Ee
Q 020301          244 PVLDKTTYHL-------IN----K---ERLATMKKEAILVNCSRGPVIDEV--ALVEH--LKQNPMFRVG--LD  297 (328)
Q Consensus       244 ~plt~~t~~l-------i~----~---~~~~~mk~ga~lIN~aRG~~vde~--aL~~a--L~~g~i~gaa--lD  297 (328)
                      .+. +...++       .|    .   +.+....|++++||++  ..+|.-  .+.+.  +...++.|.+  ||
T Consensus        82 ~g~-p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~~~~~~k~s~~p~~rviG~gt~Ld  152 (318)
T 1y6j_A           82 AGA-NRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS--NPVDIITYMIQKWSGLPVGKVIGSGTVLD  152 (318)
T ss_dssp             CCC-------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS--SSHHHHHHHHHHHHTCCTTTEEECTTHHH
T ss_pred             CCC-CCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CcHHHHHHHHHHHcCCCHHHEeccCCchH
Confidence            984 332221       01    1   1223336899999974  344443  33333  3334666663  46

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.38  E-value=0.0032  Score=59.23  Aligned_cols=95  Identities=14%  Similarity=0.170  Sum_probs=63.2

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc---hhHHHHHHhhhhhhhhcCCCCCccccccCCH-HHHh---
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVL---  234 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell---  234 (328)
                      .+.|++|.|+|.|.||..+++.+ +.+|++|++.+++.   ...  ++...+       |.... . .. ++ +++.   
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a-~~~Ga~Vi~~~~~~~~~~~~--~~~~~~-------ga~~v-~-~~-~~~~~~~~~~  244 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLF-RTYGLEVWMANRREPTEVEQ--TVIEET-------KTNYY-N-SS-NGYDKLKDSV  244 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHH-HHHTCEEEEEESSCCCHHHH--HHHHHH-------TCEEE-E-CT-TCSHHHHHHH
T ss_pred             cCCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCccchHHH--HHHHHh-------CCcee-c-hH-HHHHHHHHhC
Confidence            57799999999999999999985 78999999999876   332  222222       21111 1 11 22 1221   


Q ss_pred             hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      ...|+|+.++......   + +..++.|+++..+|+++-
T Consensus       245 ~~~d~vid~~g~~~~~---~-~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          245 GKFDVIIDATGADVNI---L-GNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             CCEEEEEECCCCCTHH---H-HHHGGGEEEEEEEEECSC
T ss_pred             CCCCEEEECCCChHHH---H-HHHHHHHhcCCEEEEEec
Confidence            3589999998743222   0 556788888888888864

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.38  E-value=0.0086  Score=56.20  Aligned_cols=71  Identities=20%  Similarity=0.326  Sum_probs=45.6

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcC--------CcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGF--------KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~f--------g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (328)
                      ++--+|||||+|.||+.-++.+ +.+        +++|. ++|+++.. .+++.+.|+       ..    ..+.+++++
T Consensus        23 MkkirvgiIG~G~ig~~H~~a~-~~~~~~~~~~~~~~lvav~d~~~~~-a~~~a~~~g-------~~----~~y~d~~el   89 (393)
T 4fb5_A           23 MKPLGIGLIGTGYMGKCHALAW-NAVKTVFGDVERPRLVHLAEANAGL-AEARAGEFG-------FE----KATADWRAL   89 (393)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHH-TTHHHHHCSSCCCEEEEEECC--TT-HHHHHHHHT-------CS----EEESCHHHH
T ss_pred             CCCccEEEEcCCHHHHHHHHHH-HhhhhhhccCCCcEEEEEECCCHHH-HHHHHHHhC-------CC----eecCCHHHH
Confidence            3445899999999999877654 332        56765 56887643 233333332       11    235799999


Q ss_pred             hhc--CCEEEEcCCC
Q 020301          234 LRE--ADVISLHPVL  246 (328)
Q Consensus       234 l~~--aDiV~l~~pl  246 (328)
                      |+.  -|+|+++.|.
T Consensus        90 l~~~~iDaV~IatP~  104 (393)
T 4fb5_A           90 IADPEVDVVSVTTPN  104 (393)
T ss_dssp             HHCTTCCEEEECSCG
T ss_pred             hcCCCCcEEEECCCh
Confidence            974  6999999993

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=96.38  E-value=0.071  Score=49.86  Aligned_cols=115  Identities=17%  Similarity=0.142  Sum_probs=72.8

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .+.|.+|++||= +++.++++..+ ..||++|.+..|..-...+...+...+.++..|.   ......+++|.++.||+|
T Consensus       176 ~l~glkva~vGD~~nva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~---~v~~~~d~~eav~~aDVv  251 (340)
T 4ep1_A          176 TFKGIKLAYVGDGNNVCHSLLLAS-AKVGMHMTVATPVGYRPNEEIVKKALAIAKETGA---EIEILHNPELAVNEADFI  251 (340)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCC---CEEEESCHHHHHTTCSEE
T ss_pred             CCCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCC---eEEEECCHHHHhCCCCEE
Confidence            378999999996 56778888876 5799999999875321111111100000111121   122346899999999999


Q ss_pred             EEcCCCCh------h-----hhccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 020301          241 SLHPVLDK------T-----TYHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (328)
Q Consensus       241 ~l~~plt~------~-----t~~li~~~~~~~mk~ga~lIN~a---RG~~vde~  280 (328)
                      ..-.=...      +     ...-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       252 yt~~w~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~e  305 (340)
T 4ep1_A          252 YTDVWMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCLPAHREEEVTGE  305 (340)
T ss_dssp             EECCC------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             EecCccCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCCCCCCCceeCHH
Confidence            66442110      1     12347999999999999999886   77666544

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.37  E-value=0.053  Score=52.20  Aligned_cols=118  Identities=19%  Similarity=0.227  Sum_probs=73.1

Q ss_pred             ccccCCCEEEEEecCHHHHHHHHHHHhc-CCcEEEE-EcCC---------chhHHHHHHhhhhhhhhcCCCCCccccccC
Q 020301          160 GNLLKGQTVGVIGAGRIGSAYARMMVEG-FKMNLIY-YDLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRAS  228 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~-fg~~V~~-~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (328)
                      |.++.|+++.|.|+|++|+.+|+.| .. .|++|++ .|.+         ....+.++.+..+      ...........
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L-~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g------~l~~y~~a~~~  276 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLI-SQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHG------TVVTYPKGERI  276 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSS------CSTTCSSSEEE
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHH-HHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhC------CcccCCCceEc
Confidence            3478999999999999999999987 56 8999983 3432         1112222211110      11110001122


Q ss_pred             CHHHHh-hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          229 SMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       229 ~l~ell-~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      +.++++ ..||+++-|..     .+.++.+...+++ -.+++-.+-+++- .++- +.|.+..+.
T Consensus       277 ~~~eil~~~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~t-~~a~-~~l~~~Gi~  333 (415)
T 2tmg_A          277 TNEELLELDVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPTT-PEAD-EILSRRGIL  333 (415)
T ss_dssp             CHHHHTTCSCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCBC-HHHH-HHHHHTTCE
T ss_pred             CchhhhcCCCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCcccC-HHHH-HHHHHCCCE
Confidence            456665 47999998865     5667888888884 6688888888864 4443 345554443

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.37  E-value=0.0052  Score=57.67  Aligned_cols=103  Identities=17%  Similarity=0.249  Sum_probs=65.3

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch------------------hHHHHHHhhhhhhhhcC-CCC
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKAN-GEQ  220 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~-~~~  220 (328)
                      ..|.+++|.|||.|.+|..+|+.|+ ..|. ++..+|...-                  .+.+...+.    +..- ...
T Consensus        30 ~kL~~~~VlIvGaGGlGs~va~~La-~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~----L~~inP~v  104 (340)
T 3rui_A           30 DIIKNTKVLLLGAGTLGCYVSRALI-AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAAS----LKRIFPLM  104 (340)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHH----HHHHCTTC
T ss_pred             HHHhCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHH----HHHhCCCC
Confidence            4689999999999999999999985 6676 6888887431                  111111111    1100 000


Q ss_pred             Ccccc-------------------ccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          221 PVTWK-------------------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       221 ~~~~~-------------------~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .....                   ...+++++++++|+|+.++- +.+|+.++|......   +..+|+.+
T Consensus       105 ~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tD-n~~tR~lin~~c~~~---~~plI~aa  171 (340)
T 3rui_A          105 DATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA  171 (340)
T ss_dssp             EEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCS-STGGGHHHHHHHHHT---TCEEEEEE
T ss_pred             EEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCC-CHHHHHHHHHHHHHc---CCcEEEee
Confidence            00000                   01235788999999999876 678999998877754   44567754

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.34  E-value=0.0081  Score=56.24  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=25.4

Q ss_pred             CEEEEEecCHHHHHHHHHHHhc--CCcEEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEG--FKMNLIYYDL  197 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~--fg~~V~~~d~  197 (328)
                      .+|||+|+|.||+.+.|.|...  =.++|.+.+.
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~   34 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence            3799999999999999987543  4688876654

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.33  E-value=0.0056  Score=59.79  Aligned_cols=44  Identities=16%  Similarity=0.185  Sum_probs=37.8

Q ss_pred             ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH
Q 020301          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE  204 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~  204 (328)
                      ..++.|+++.|||.|.+|.+.++.| ...|++|.++|+...+..+
T Consensus         7 ~~~l~~~~vlVvGgG~va~~k~~~L-~~~ga~V~vi~~~~~~~~~   50 (457)
T 1pjq_A            7 FCQLRDRDCLIVGGGDVAERKARLL-LEAGARLTVNALTFIPQFT   50 (457)
T ss_dssp             EECCBTCEEEEECCSHHHHHHHHHH-HHTTBEEEEEESSCCHHHH
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHH-HhCcCEEEEEcCCCCHHHH
Confidence            3578999999999999999999997 5899999999997655433

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=96.32  E-value=0.0086  Score=56.00  Aligned_cols=78  Identities=21%  Similarity=0.204  Sum_probs=45.9

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhcCCCCCc--------cccccCCHHHHhhcC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPV--------TWKRASSMDEVLREA  237 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~ell~~a  237 (328)
                      ++||+|+|.||+.+++.+...-++++.+ +|+++.. .....+.++ + ...+..+.        ......+.++++..+
T Consensus         4 rVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~-~~~~~~~~g-~-~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~v   80 (334)
T 2czc_A            4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDF-EAYRAKELG-I-PVYAASEEFIPRFEKEGFEVAGTLNDLLEKV   80 (334)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSH-HHHHHHHTT-C-CEEESSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred             EEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHH-HHHHHHhcC-c-cccccccccceeccCCceEEcCcHHHhccCC
Confidence            7999999999999999874333678654 4654322 222211111 0 00000000        001235789999999


Q ss_pred             CEEEEcCCCC
Q 020301          238 DVISLHPVLD  247 (328)
Q Consensus       238 DiV~l~~plt  247 (328)
                      |+|+.|.|..
T Consensus        81 DvV~~aTp~~   90 (334)
T 2czc_A           81 DIIVDATPGG   90 (334)
T ss_dssp             SEEEECCSTT
T ss_pred             CEEEECCCcc
Confidence            9999999844

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.31  E-value=0.0055  Score=57.75  Aligned_cols=94  Identities=14%  Similarity=0.199  Sum_probs=63.0

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC---HHHHhhcCCEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREADVI  240 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~aDiV  240 (328)
                      .|++|.|+|.|.||..+++.+ +.+|++|++.+++.... +...+       .-|....  ....+   +.++....|+|
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~Vi~~~~~~~~~-~~~~~-------~lGa~~v--~~~~~~~~~~~~~~~~D~v  255 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFA-KAFGSKVTVISTSPSKK-EEALK-------NFGADSF--LVSRDQEQMQAAAGTLDGI  255 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCGGGH-HHHHH-------TSCCSEE--EETTCHHHHHHTTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHH-------hcCCceE--EeccCHHHHHHhhCCCCEE
Confidence            688999999999999999985 79999999999876432 11111       1122111  11122   33444568999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      +.++.....     -+..++.|+++..+|+++.
T Consensus       256 id~~g~~~~-----~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          256 IDTVSAVHP-----LLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             EECCSSCCC-----SHHHHHHEEEEEEEEECCC
T ss_pred             EECCCcHHH-----HHHHHHHHhcCCEEEEEcc
Confidence            999874322     2466778888888888864

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=96.31  E-value=0.0088  Score=56.80  Aligned_cols=68  Identities=19%  Similarity=0.279  Sum_probs=48.4

Q ss_pred             CEEEEEecC-HHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc--CCEEE
Q 020301          166 QTVGVIGAG-RIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (328)
Q Consensus       166 ~tvgIiG~G-~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~  241 (328)
                      .++||||+| .+|+..++.+.+.-++++. ++|+++... ++..+.|       +.     ..+.+++++++.  .|+|+
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~-------g~-----~~~~~~~ell~~~~vD~V~   69 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVR-ERFGKEY-------GI-----PVFATLAEMMQHVQMDAVY   69 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHH-HHHHHHH-------TC-----CEESSHHHHHHHSCCSEEE
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHH-HHHHHHc-------CC-----CeECCHHHHHcCCCCCEEE
Confidence            379999999 9999999887433478866 678876432 2222222       21     235799999985  99999


Q ss_pred             EcCCC
Q 020301          242 LHPVL  246 (328)
Q Consensus       242 l~~pl  246 (328)
                      ++.|.
T Consensus        70 i~tp~   74 (387)
T 3moi_A           70 IASPH   74 (387)
T ss_dssp             ECSCG
T ss_pred             EcCCc
Confidence            99994

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.31  E-value=0.018  Score=53.52  Aligned_cols=110  Identities=15%  Similarity=0.233  Sum_probs=62.0

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      ..++|+|||.|.+|..+|..++ .-|. +|..+|+.+... +.............+ .........+ .+.++.||+|++
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~-~~~~~~v~l~Di~~~~~-~g~a~dL~~~~~~~~-~~~~v~~t~d-~~a~~~aDvVIi   79 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLAL-IKQLGDVVLFDIAQGMP-NGKALDLLQTCPIEG-VDFKVRGTND-YKDLENSDVVIV   79 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSSSHH-HHHHHHHHTTHHHHT-CCCCEEEESC-GGGGTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCceEEEEeCChHHH-HHHHHHHHhhhhhcC-CCcEEEEcCC-HHHHCCCCEEEE
Confidence            3578999999999999999874 3344 999999986432 111111100000000 0111111123 468899999999


Q ss_pred             cCCCChhhhcc-----c--cH-------HHHhcCCCCcEEEEcCCCcccCHH
Q 020301          243 HPVLDKTTYHL-----I--NK-------ERLATMKKEAILVNCSRGPVIDEV  280 (328)
Q Consensus       243 ~~plt~~t~~l-----i--~~-------~~~~~mk~ga~lIN~aRG~~vde~  280 (328)
                      +.+. +...++     +  |.       +.+....|++++++++  ..+|.-
T Consensus        80 ~ag~-p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~  128 (321)
T 3p7m_A           80 TAGV-PRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLDIM  128 (321)
T ss_dssp             CCSC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHH
T ss_pred             cCCc-CCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchHHH
Confidence            9753 221221     1  11       1223345899999995  455543

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.30  E-value=0.0096  Score=55.54  Aligned_cols=106  Identities=15%  Similarity=0.264  Sum_probs=60.3

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      +..++|+|||.|.+|..+|..|+ .-|. +|..||+..... +.............+ .+.......+. +.++.||+|+
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~-~~~~~~v~L~Di~~~~~-~g~~~dl~~~~~~~~-~~~~v~~t~d~-~a~~~aDiVI   80 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAG-LKELGDVVLFDIAEGTP-QGKGLDIAESSPVDG-FDAKFTGANDY-AAIEGADVVI   80 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSSSHH-HHHHHHHHHHHHHHT-CCCCEEEESSG-GGGTTCSEEE
T ss_pred             CcCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCchhH-HHHHHHHhchhhhcC-CCCEEEEeCCH-HHHCCCCEEE
Confidence            45679999999999999999874 4455 999999987532 111100000000000 01111112344 7889999999


Q ss_pred             EcCCCChhhhcc-----c--cH-------HHHhcCCCCcEEEEcCC
Q 020301          242 LHPVLDKTTYHL-----I--NK-------ERLATMKKEAILVNCSR  273 (328)
Q Consensus       242 l~~plt~~t~~l-----i--~~-------~~~~~mk~ga~lIN~aR  273 (328)
                      ++.+. +...++     +  |.       +.+....|++++++++-
T Consensus        81 iaag~-p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           81 VTAGV-PRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             ECCSC-CCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EccCc-CCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence            99752 222221     1  11       12233458999999974

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=96.29  E-value=0.011  Score=57.59  Aligned_cols=126  Identities=15%  Similarity=0.183  Sum_probs=73.0

Q ss_pred             CEEEEEecCHH-HHHHHHHHHh---cC-CcEEEEEcCCc--hhHHHHHHhhhhhhh-hcCCCCCccccccCCHHHHhhcC
Q 020301          166 QTVGVIGAGRI-GSAYARMMVE---GF-KMNLIYYDLYQ--ATRLEKFVTAYGQFL-KANGEQPVTWKRASSMDEVLREA  237 (328)
Q Consensus       166 ~tvgIiG~G~I-G~~vA~~l~~---~f-g~~V~~~d~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ell~~a  237 (328)
                      .+|+|||.|.. |..++..|++   .+ +-+|..||+..  .. .+...+ ..... ...+ .+.......++++.++.|
T Consensus         8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~-~~~~~~-~~~~~~~~~~-~~~~i~~t~D~~eal~gA   84 (450)
T 1s6y_A            8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEK-LEIVGA-LAKRMVEKAG-VPIEIHLTLDRRRALDGA   84 (450)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHH-HHHHHH-HHHHHHHHTT-CCCEEEEESCHHHHHTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHH-HHHHHH-HHHHHHhhcC-CCcEEEEeCCHHHHhCCC
Confidence            58999999999 8887665543   45 56899999977  43 121111 11111 1111 122232236888899999


Q ss_pred             CEEEEcCCCChh---hh--------cc--------------------cc--HHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 020301          238 DVISLHPVLDKT---TY--------HL--------------------IN--KERLATMKKEAILVNCSRGPVIDEVALVE  284 (328)
Q Consensus       238 DiV~l~~plt~~---t~--------~l--------------------i~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~  284 (328)
                      |+|+++.|....   ++        ++                    +-  .+.+....|++++||++-.-=+-..++.+
T Consensus        85 D~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~~k  164 (450)
T 1s6y_A           85 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLR  164 (450)
T ss_dssp             SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHH
T ss_pred             CEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHH
Confidence            999999995321   11        11                    10  12334445899999998765444555555


Q ss_pred             HHHcCCccEE
Q 020301          285 HLKQNPMFRV  294 (328)
Q Consensus       285 aL~~g~i~ga  294 (328)
                      .....++.|.
T Consensus       165 ~~p~~rViG~  174 (450)
T 1s6y_A          165 YTKQEKVVGL  174 (450)
T ss_dssp             HCCCCCEEEC
T ss_pred             hCCCCCEEEe
Confidence            4323345554

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.29  E-value=0.0057  Score=57.21  Aligned_cols=110  Identities=7%  Similarity=0.038  Sum_probs=64.0

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      ..++|+|||.|.||..+|..++ ..|.  +|..+|...... +...........- . .........+.++ ++.||+|+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la-~~g~~~ev~L~Di~~~~~-~g~a~DL~~~~~~-~-~~~~i~~t~d~~~-~~daDiVI   94 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVL-MKDLADEVALVDVMEDKL-KGEMMDLEHGSLF-L-HTAKIVSGKDYSV-SAGSKLVV   94 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHH-HHCCCSEEEEECSCHHHH-HHHHHHHHHHGGG-S-CCSEEEEESSSCS-CSSCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEECCHHHH-HHHHHHhhhhhhc-c-cCCeEEEcCCHHH-hCCCCEEE
Confidence            5689999999999999999874 4455  899999976432 2211111000000 0 0111112245666 89999999


Q ss_pred             EcCCCCh---hhh-ccc--cH-------HHHhcCCCCcEEEEcCCCcccCHH
Q 020301          242 LHPVLDK---TTY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDEV  280 (328)
Q Consensus       242 l~~plt~---~t~-~li--~~-------~~~~~mk~ga~lIN~aRG~~vde~  280 (328)
                      ++.....   +|| .++  |.       +.+....|++++++++  ..+|.-
T Consensus        95 itaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt--NPvdi~  144 (330)
T 3ldh_A           95 ITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP--ELGTDK  144 (330)
T ss_dssp             ECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS--SSHHHH
T ss_pred             EeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC--CccHHH
Confidence            9865321   122 122  11       2344457999999997  445543

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.28  E-value=0.0091  Score=55.17  Aligned_cols=107  Identities=16%  Similarity=0.262  Sum_probs=60.0

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      ++|+|||.|.+|..+|..++ ..|. +|..+|...... +.............. .........+. +.++.||+|+++.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la-~~g~~~v~L~Di~~~~~-~g~~~dl~~~~~~~~-~~~~i~~t~d~-~a~~~aD~Vi~a~   78 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLA-AKELGDIVLLDIVEGVP-QGKALDLYEASPIEG-FDVRVTGTNNY-ADTANSDVIVVTS   78 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSSSSHH-HHHHHHHHTTHHHHT-CCCCEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCCeEEEEeCCccHH-HHHHHhHHHhHhhcC-CCeEEEECCCH-HHHCCCCEEEEcC
Confidence            58999999999999999874 5564 899999876432 221111111000000 01111122466 6689999999998


Q ss_pred             CCChhhhcc-----------ccHH---HHhcCCCCcEEEEcCCCcccCH
Q 020301          245 VLDKTTYHL-----------INKE---RLATMKKEAILVNCSRGPVIDE  279 (328)
Q Consensus       245 plt~~t~~l-----------i~~~---~~~~mk~ga~lIN~aRG~~vde  279 (328)
                      +. +...++           +-.+   .+....|++++++.+-  .+|.
T Consensus        79 g~-p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN--Pv~~  124 (309)
T 1ur5_A           79 GA-PRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN--PLDA  124 (309)
T ss_dssp             CC---------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS--SHHH
T ss_pred             CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC--chHH
Confidence            53 322221           1012   2233358999999743  4444

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.27  E-value=0.073  Score=49.21  Aligned_cols=142  Identities=13%  Similarity=0.149  Sum_probs=87.5

Q ss_pred             HHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEec-CHHHHHHHHH
Q 020301          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYARM  183 (328)
Q Consensus       105 ~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~-G~IG~~vA~~  183 (328)
                      ++-.+|+|.|.-+....+.  .+++=++.+.+++                     | .+.|.+|+++|= +++.++.+..
T Consensus       118 A~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~---------------------g-~l~glkva~vGD~~~va~Sl~~~  173 (309)
T 4f2g_A          118 AENSRVPVINGLTNEYHPC--QVLADIFTYYEHR---------------------G-PIRGKTVAWVGDANNMLYTWIQA  173 (309)
T ss_dssp             HHTCSSCEEEEECSSCCHH--HHHHHHHHHHHHH---------------------S-CCTTCEEEEESCCCHHHHHHHHH
T ss_pred             HHhCCCCEEECCCCccCcH--HHHHHHHHHHHHh---------------------C-CCCCCEEEEECCCcchHHHHHHH
Confidence            4456799999766544333  2233333333221                     1 478999999996 5677888887


Q ss_pred             HHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC----CCCh---h-----hh
Q 020301          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP----VLDK---T-----TY  251 (328)
Q Consensus       184 l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~----plt~---~-----t~  251 (328)
                      + ..||++|.+..|..-...++..      .+..   ........+++|.+++||+|..-.    ....   +     ..
T Consensus       174 ~-~~~G~~v~~~~P~~~~~~~~~~------~~~~---g~~v~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~r~~~~~~  243 (309)
T 4f2g_A          174 A-RILDFKLQLSTPPGYALDAKLV------DAES---APFYQVFDDPNEACKGADLVTTDVWTSMGFEAENEARKRAFAD  243 (309)
T ss_dssp             H-HHHTCEEEEECCGGGCCCGGGS------CGGG---GGGEEECSSHHHHTTTCSEEEECCC------------CCSGGG
T ss_pred             H-HHcCCEEEEECCcccCCCHHHH------HHHc---CCeEEEEcCHHHHhcCCCEEEecccccCcchhhHHHHHHHhcC
Confidence            6 5799999999874321111100      0000   112234579999999999997643    1100   0     12


Q ss_pred             ccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 020301          252 HLINKERLATMKKEAILVNCS---RGPVIDEV  280 (328)
Q Consensus       252 ~li~~~~~~~mk~ga~lIN~a---RG~~vde~  280 (328)
                      .-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       244 y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~e  275 (309)
T 4f2g_A          244 WCVDEEMMSHANSDALFMHCLPAHRGEEVTAG  275 (309)
T ss_dssp             GCBCHHHHTTSCTTCEEEECSSCCBTTTBCHH
T ss_pred             ceeCHHHHHhcCCCeEEECCCCCCCCceecHH
Confidence            347999999999999999874   77656544

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=96.26  E-value=0.012  Score=55.20  Aligned_cols=31  Identities=32%  Similarity=0.487  Sum_probs=25.3

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEc
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d  196 (328)
                      .+|||+|+|+||+.++|.+...-+++|.+..
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~   34 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIN   34 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEec
Confidence            3799999999999999987544578877654

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=96.25  E-value=0.0038  Score=54.89  Aligned_cols=68  Identities=15%  Similarity=0.248  Sum_probs=42.4

Q ss_pred             CEEEEEecCHHHHHHHHH-HHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIGAGRIGSAYARM-MVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~-l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .+++|||.|++|+.+|+. .....|+++. ++|.++...-           +.  ..........++++++++.|+++++
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g-----------~~--i~gv~V~~~~dl~eli~~~D~ViIA  152 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIG-----------TE--VGGVPVYNLDDLEQHVKDESVAILT  152 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTT-----------CE--ETTEEEEEGGGHHHHCSSCCEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHH-----------hH--hcCCeeechhhHHHHHHhCCEEEEe
Confidence            359999999999999993 2235678765 5677654310           00  0111222346899999777999999


Q ss_pred             CCC
Q 020301          244 PVL  246 (328)
Q Consensus       244 ~pl  246 (328)
                      +|.
T Consensus       153 vPs  155 (215)
T 2vt3_A          153 VPA  155 (215)
T ss_dssp             SCH
T ss_pred             cCc
Confidence            993

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.24  E-value=0.0041  Score=60.62  Aligned_cols=76  Identities=9%  Similarity=0.128  Sum_probs=49.5

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCc--cccccCCHHHHhhcCCEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVIS  241 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV~  241 (328)
                      .+++++|+|.|.||+.+|+.|+ ..|.+|.++||+.... ++..+.++      +....  ......+++++++.+|+|+
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~-~~G~~V~v~~R~~~~a-~~la~~~~------~~~~~~~Dv~d~~~l~~~l~~~DvVI   73 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLT-DSGIKVTVACRTLESA-KKLSAGVQ------HSTPISLDVNDDAALDAEVAKHDLVI   73 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHH-TTTCEEEEEESSHHHH-HHTTTTCT------TEEEEECCTTCHHHHHHHHTTSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCcCEEEEEECCHHHH-HHHHHhcC------CceEEEeecCCHHHHHHHHcCCcEEE
Confidence            4789999999999999999984 6899999999986432 11111000      00000  0011124567889999999


Q ss_pred             EcCCCC
Q 020301          242 LHPVLD  247 (328)
Q Consensus       242 l~~plt  247 (328)
                      .+.|..
T Consensus        74 n~a~~~   79 (450)
T 1ff9_A           74 SLIPYT   79 (450)
T ss_dssp             ECCC--
T ss_pred             ECCccc
Confidence            999964

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.23  E-value=0.0088  Score=55.61  Aligned_cols=95  Identities=12%  Similarity=0.185  Sum_probs=60.6

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh----hcCCE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL----READV  239 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell----~~aDi  239 (328)
                      .|+++.|+|.|.||..+++.+ +.+|++|++.+++....  +...       +-|..........++.+.+    ...|+
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a-~~~Ga~Vi~~~~~~~~~--~~~~-------~lGa~~~~d~~~~~~~~~~~~~~~~~d~  233 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYA-KAMGLNVVAVDIGDEKL--ELAK-------ELGADLVVNPLKEDAAKFMKEKVGGVHA  233 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHH--HHHH-------HTTCSEEECTTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCHHHH--HHHH-------HCCCCEEecCCCccHHHHHHHHhCCCCE
Confidence            478999999999999999985 79999999999876432  1111       1222111011112333322    46899


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      |+.++...+.     -+..++.|+++..++.++.
T Consensus       234 vid~~g~~~~-----~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          234 AVVTAVSKPA-----FQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             EEESSCCHHH-----HHHHHHHEEEEEEEEECCC
T ss_pred             EEECCCCHHH-----HHHHHHHhhcCCEEEEecc
Confidence            9988873221     2456677788888877753

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.22  E-value=0.0086  Score=55.88  Aligned_cols=122  Identities=18%  Similarity=0.195  Sum_probs=66.5

Q ss_pred             CCEEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      ..+|+|||.|.+|..++..++. +..-++..||..... .+.....+.... .-. .+....  .+..+.++.||+|+++
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~-~~g~~~dl~~~~-~~~-~~~~i~--~~~~~a~~~aDvVii~   83 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDK-TKGDAIDLSNAL-PFT-SPKKIY--SAEYSDAKDADLVVIT   83 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHH-HHHHHHHHHTTG-GGS-CCCEEE--ECCGGGGGGCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchH-hHHHHHHHHHHH-Hhc-CCeEEE--ECCHHHhCCCCEEEEc
Confidence            4689999999999999988642 333489999997532 222111111110 000 111111  1346679999999999


Q ss_pred             CCCChhhhcc-------ccH-------HHHhcCCCCcEEEEcCCCcccCHH--HHHHH--HHcCCccEE
Q 020301          244 PVLDKTTYHL-------INK-------ERLATMKKEAILVNCSRGPVIDEV--ALVEH--LKQNPMFRV  294 (328)
Q Consensus       244 ~plt~~t~~l-------i~~-------~~~~~mk~ga~lIN~aRG~~vde~--aL~~a--L~~g~i~ga  294 (328)
                      .+.. ...++       .|.       +.+.+..|++++||+  ...+|.-  .+.+.  +...++.|.
T Consensus        84 ag~~-~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~~~t~~~~k~s~~p~~rviG~  149 (326)
T 2zqz_A           84 AGAP-QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVA--ANPVDILTYATWKLSGFPKNRVVGS  149 (326)
T ss_dssp             CCCC------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEEC--SSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--CCcHHHHHHHHHHHcCCCHHHEEEc
Confidence            8743 22221       111       122233689999998  4445443  33333  233356565

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.22  E-value=0.0058  Score=57.02  Aligned_cols=95  Identities=15%  Similarity=0.100  Sum_probs=60.7

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh------c
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR------E  236 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------~  236 (328)
                      .|++|.|+|.|.||..+++.+ +.+|+ +|++.+++....  ++...+       |..........++.+.+.      .
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~~Vi~~~~~~~~~--~~~~~~-------Ga~~~~~~~~~~~~~~v~~~~~g~g  236 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVA-KASGAYPVIVSEPSDFRR--ELAKKV-------GADYVINPFEEDVVKEVMDITDGNG  236 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HHTTCCSEEEECSCHHHH--HHHHHH-------TCSEEECTTTSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH--HHHHHh-------CCCEEECCCCcCHHHHHHHHcCCCC
Confidence            789999999999999999985 79999 999999875432  111222       221111111124433332      5


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .|+|+.++...+.     -...++.++++..+++++.
T Consensus       237 ~D~vid~~g~~~~-----~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          237 VDVFLEFSGAPKA-----LEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             EEEEEECSCCHHH-----HHHHHHHEEEEEEEEECCC
T ss_pred             CCEEEECCCCHHH-----HHHHHHHHhcCCEEEEEcc
Confidence            8999998873221     2445667777777777753

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.22  E-value=0.0078  Score=55.95  Aligned_cols=121  Identities=17%  Similarity=0.173  Sum_probs=66.4

Q ss_pred             CEEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      .+|+|||.|.+|..++..++. +..-++..||..... .+.......... .-. .+....  .+..+.++.||+|+++.
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~-~~g~~~dl~~~~-~~~-~~~~v~--~~~~~a~~~aDvVii~a   80 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDR-TKGDALDLEDAQ-AFT-APKKIY--SGEYSDCKDADLVVITA   80 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH-HHHHHHHHHGGG-GGS-CCCEEE--ECCGGGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchH-HHHHHHHHHHHH-Hhc-CCeEEE--ECCHHHhCCCCEEEECC
Confidence            589999999999999988753 333389999997532 222111111111 000 111111  13466799999999998


Q ss_pred             CCChhhhcc-------cc-------HHHHhcCCCCcEEEEcCCCcccCH--HHHHHH--HHcCCccEE
Q 020301          245 VLDKTTYHL-------IN-------KERLATMKKEAILVNCSRGPVIDE--VALVEH--LKQNPMFRV  294 (328)
Q Consensus       245 plt~~t~~l-------i~-------~~~~~~mk~ga~lIN~aRG~~vde--~aL~~a--L~~g~i~ga  294 (328)
                      +.. ...++       .|       .+.+....|+++++|++  ..+|.  ..+.+.  +...++.|.
T Consensus        81 g~~-~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~~~t~~~~k~s~~p~~rviG~  145 (318)
T 1ez4_A           81 GAP-QKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA--NPVDILTYATWKFSGFPKERVIGS  145 (318)
T ss_dssp             CC-----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC--CcHHHHHHHHHHHcCCCHHHEEec
Confidence            743 22221       11       12333347899999984  44444  333333  333356565

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.21  E-value=0.008  Score=56.38  Aligned_cols=96  Identities=18%  Similarity=0.124  Sum_probs=59.7

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccC-CHHH-HhhcCCEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS-SMDE-VLREADVIS  241 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~e-ll~~aDiV~  241 (328)
                      .|++|.|+|.|.+|...++.+ +.+|++|++.+++....  ++...+       |....-..... ++.+ +....|+|+
T Consensus       179 ~g~~VlV~GaG~vG~~~~qla-k~~Ga~Vi~~~~~~~~~--~~~~~l-------Ga~~v~~~~~~~~~~~~~~~~~D~vi  248 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLIS-KAMGAETYVISRSSRKR--EDAMKM-------GADHYIATLEEGDWGEKYFDTFDLIV  248 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEESSSTTH--HHHHHH-------TCSEEEEGGGTSCHHHHSCSCEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHH--HHHHHc-------CCCEEEcCcCchHHHHHhhcCCCEEE
Confidence            478999999999999999985 78999999999876532  111112       22111111111 3333 224689999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .+++.++  .. .-+..++.++++..++.++
T Consensus       249 d~~g~~~--~~-~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          249 VCASSLT--DI-DFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             ECCSCST--TC-CTTTGGGGEEEEEEEEECC
T ss_pred             ECCCCCc--HH-HHHHHHHHhcCCCEEEEec
Confidence            9987521  01 1234566777777777765

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=96.19  E-value=0.011  Score=56.51  Aligned_cols=68  Identities=25%  Similarity=0.362  Sum_probs=46.4

Q ss_pred             EEEEEecCHHHHHHHHHHHhc--------CCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--
Q 020301          167 TVGVIGAGRIGSAYARMMVEG--------FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--  235 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~--------fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--  235 (328)
                      +|||||+|.||+.-++.+++.        -+++|. ++|+++.. .+++.+.|+       ..    ..+.+++++|+  
T Consensus        28 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~-a~~~a~~~~-------~~----~~y~d~~~ll~~~   95 (412)
T 4gqa_A           28 NIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAM-AERHAAKLG-------AE----KAYGDWRELVNDP   95 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHH-HHHHHHHHT-------CS----EEESSHHHHHHCT
T ss_pred             eEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHH-HHHHHHHcC-------CC----eEECCHHHHhcCC
Confidence            799999999999888776321        146766 56887643 333333332       11    23579999997  


Q ss_pred             cCCEEEEcCCC
Q 020301          236 EADVISLHPVL  246 (328)
Q Consensus       236 ~aDiV~l~~pl  246 (328)
                      +.|+|+++.|.
T Consensus        96 ~vD~V~I~tp~  106 (412)
T 4gqa_A           96 QVDVVDITSPN  106 (412)
T ss_dssp             TCCEEEECSCG
T ss_pred             CCCEEEECCCc
Confidence            47999999993

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=96.19  E-value=0.012  Score=53.89  Aligned_cols=106  Identities=17%  Similarity=0.115  Sum_probs=66.1

Q ss_pred             CCEEEEEec-CHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEE
Q 020301          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (328)
Q Consensus       165 g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  240 (328)
                      .+++.|+|+ |++|+.+++.+ +..|++++ ..+|....                 ....+...+.+++++..  ..|++
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l-~~~g~~~v~~VnP~~~g-----------------~~i~G~~vy~sl~el~~~~~~Dv~   68 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQM-LTYGTKIVAGVTPGKGG-----------------MEVLGVPVYDTVKEAVAHHEVDAS   68 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTT-----------------CEETTEEEESSHHHHHHHSCCSEE
T ss_pred             CCEEEEECCCCCHHHHHHHHH-HHcCCeEEEEECCCCCC-----------------ceECCEEeeCCHHHHhhcCCCCEE
Confidence            467999999 99999999987 46788843 55654310                 00112334568999998  89999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc-ccCHHHHHHHHHcCCcc
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-VIDEVALVEHLKQNPMF  292 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~-~vde~aL~~aL~~g~i~  292 (328)
                      ++++|. +.+...+ ++..+. +-. .+|..+-|- .-+++.|.++.++..+.
T Consensus        69 Ii~vp~-~~~~~~~-~ea~~~-Gi~-~vVi~t~G~~~~~~~~l~~~a~~~gi~  117 (288)
T 1oi7_A           69 IIFVPA-PAAADAA-LEAAHA-GIP-LIVLITEGIPTLDMVRAVEEIKALGSR  117 (288)
T ss_dssp             EECCCH-HHHHHHH-HHHHHT-TCS-EEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             EEecCH-HHHHHHH-HHHHHC-CCC-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            999992 3333433 333332 222 244455452 23456788888775553

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.18  E-value=0.017  Score=55.07  Aligned_cols=101  Identities=16%  Similarity=0.181  Sum_probs=61.2

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh------
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR------  235 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------  235 (328)
                      -.|.+|.|+|.|.+|...++.+ +.+|+ +|++.+++....  ++...+       |....-.....++.+.+.      
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~--~~~~~l-------Ga~~vi~~~~~~~~~~i~~~t~g~  281 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAIL-KHAGASKVILSEPSEVRR--NLAKEL-------GADHVIDPTKENFVEAVLDYTNGL  281 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCHHHH--HHHHHH-------TCSEEECTTTSCHHHHHHHHTTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH--HHHHHc-------CCCEEEcCCCCCHHHHHHHHhCCC
Confidence            3588999999999999999984 89999 999999876432  222222       222111111123333222      


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      ..|+|+-++.....+...+.+..+..++++..++.++-
T Consensus       282 g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          282 GAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             CCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            49999999874322222121111233388888888863

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=96.17  E-value=0.0093  Score=55.99  Aligned_cols=80  Identities=15%  Similarity=0.162  Sum_probs=44.1

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhcC--C---CCCccccccCCHHHHhhcCCEE
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKAN--G---EQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      +|||+|+|+||+.+++.+...=++++.+ .|++.... ......++-.....  .   ....+.....++++++.++|+|
T Consensus         3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~-~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYE-AFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHH-HHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHH-HHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            7999999999999999875334688764 45543221 11111100000000  0   0000011123567777899999


Q ss_pred             EEcCCCC
Q 020301          241 SLHPVLD  247 (328)
Q Consensus       241 ~l~~plt  247 (328)
                      +.|.|..
T Consensus        82 ~~aTp~~   88 (340)
T 1b7g_O           82 VDTTPNG   88 (340)
T ss_dssp             EECCSTT
T ss_pred             EECCCCc
Confidence            9999844

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.14  E-value=0.028  Score=50.96  Aligned_cols=106  Identities=15%  Similarity=0.183  Sum_probs=67.0

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      .++++.|+|.|.+|+.++..| ...|+ +|.+++|+..+ .++..+.++       .   .+.  .++.  +.++|+|+.
T Consensus       118 ~~~~vlvlGaGgaarav~~~L-~~~G~~~i~v~nRt~~k-a~~la~~~~-------~---~~~--~~~~--~~~~DivIn  181 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAF-KNSGFEKLKIYARNVKT-GQYLAALYG-------Y---AYI--NSLE--NQQADILVN  181 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHH-HHTTCCCEEEECSCHHH-HHHHHHHHT-------C---EEE--SCCT--TCCCSEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHH-HHHHHHHcC-------C---ccc--hhhh--cccCCEEEE
Confidence            467899999999999999997 57897 79999998643 222222221       0   111  1222  468999999


Q ss_pred             cCCCChhhh-----ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          243 HPVLDKTTY-----HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       243 ~~plt~~t~-----~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      +.|......     -.+..+.|   +++.+++|+.-.+ .++.-|..|-+.|
T Consensus       182 aTp~gm~~~~~~~~~~~~~~~l---~~~~~v~DlvY~P-~~T~ll~~A~~~G  229 (271)
T 1npy_A          182 VTSIGMKGGKEEMDLAFPKAFI---DNASVAFDVVAMP-VETPFIRYAQARG  229 (271)
T ss_dssp             CSSTTCTTSTTTTSCSSCHHHH---HHCSEEEECCCSS-SSCHHHHHHHHTT
T ss_pred             CCCCCccCccccCCCCCCHHHc---CCCCEEEEeecCC-CCCHHHHHHHHCC
Confidence            999654211     11443443   5688999998744 3444344444444

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.14  E-value=0.029  Score=52.74  Aligned_cols=95  Identities=18%  Similarity=0.119  Sum_probs=62.7

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc--cCCHHHHhh-----
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR-----  235 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~-----  235 (328)
                      .|++|.|+|.|.+|...++.+ +.+|+ +|++.+++....  ++...       -|....-...  ..++.+.+.     
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~~~~~--~~~~~-------lGa~~vi~~~~~~~~~~~~~~~~~~~  261 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGC-HSAGAKRIIAVDLNPDKF--EKAKV-------FGATDFVNPNDHSEPISQVLSKMTNG  261 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGH--HHHHH-------TTCCEEECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCHHHH--HHHHH-------hCCceEEeccccchhHHHHHHHHhCC
Confidence            588999999999999999984 89999 899999876542  11112       2321111111  124544443     


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCC-cEEEEcCC
Q 020301          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~g-a~lIN~aR  273 (328)
                      ..|+|+-++.. +++    -...++.++++ ..+|.++-
T Consensus       262 g~D~vid~~g~-~~~----~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          262 GVDFSLECVGN-VGV----MRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCCEEEECCCC-HHH----HHHHHHHhhcCCcEEEEEcC
Confidence            48999998873 222    25677888998 88888763

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.12  E-value=0.0099  Score=54.09  Aligned_cols=73  Identities=19%  Similarity=0.272  Sum_probs=48.2

Q ss_pred             CEEEEEe-cCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .+|+|+| +|+||+.+++.+.+.=++++.+ +|+...+..-...   +   +-.+... +.....++++++.++|+|+-+
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~---g---el~g~~~-gv~v~~dl~~ll~~~DVVIDf   80 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDA---G---AFLGKQT-GVALTDDIERVCAEADYLIDF   80 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBT---T---TTTTCCC-SCBCBCCHHHHHHHCSEEEEC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccH---H---HHhCCCC-CceecCCHHHHhcCCCEEEEc
Confidence            5899999 9999999999875566898876 6876432100000   0   0001111 333457999999999999988


Q ss_pred             CC
Q 020301          244 PV  245 (328)
Q Consensus       244 ~p  245 (328)
                      .+
T Consensus        81 T~   82 (272)
T 4f3y_A           81 TL   82 (272)
T ss_dssp             SC
T ss_pred             CC
Confidence            65

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=96.12  E-value=0.0064  Score=56.18  Aligned_cols=98  Identities=12%  Similarity=0.201  Sum_probs=56.4

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      .++|+|||.|.+|..+|..++ .-|.  +|..+|.... ......+ ... .   ...  ......++ +.++.||+|++
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~-~~g~~~ev~L~Di~~~-~~g~a~d-l~~-~---~~~--~i~~t~d~-~~l~~aD~Vi~   83 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAIS-AKGIADRLVLLDLSEG-TKGATMD-LEI-F---NLP--NVEISKDL-SASAHSKVVIF   83 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECCC------CHHH-HHH-H---TCT--TEEEESCG-GGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEcCCcc-hHHHHHH-Hhh-h---cCC--CeEEeCCH-HHHCCCCEEEE
Confidence            378999999999999998875 3355  9999999864 2111111 110 0   111  11122566 66899999999


Q ss_pred             cCCCC----------hhhhccccHHH---HhcCCCCcEEEEcCC
Q 020301          243 HPVLD----------KTTYHLINKER---LATMKKEAILVNCSR  273 (328)
Q Consensus       243 ~~plt----------~~t~~li~~~~---~~~mk~ga~lIN~aR  273 (328)
                      +....          .++..++ .+.   +....|++++||++-
T Consensus        84 aag~~~pG~tR~dl~~~n~~i~-~~i~~~i~~~~p~a~iiv~sN  126 (303)
T 2i6t_A           84 TVNSLGSSQSYLDVVQSNVDMF-RALVPALGHYSQHSVLLVASQ  126 (303)
T ss_dssp             CCCC----CCHHHHHHHHHHHH-HHHHHHHHHHTTTCEEEECSS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHhCCCeEEEEcCC
Confidence            97321          1111111 222   222248999999876

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.11  E-value=0.0085  Score=55.86  Aligned_cols=91  Identities=18%  Similarity=0.150  Sum_probs=58.7

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.+++....  ++.       ++-|....-    .+.+++.+..|+|+-+
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~~~~~--~~~-------~~lGa~~v~----~~~~~~~~~~D~vid~  241 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYA-VAMGAEVSVFARNEHKK--QDA-------LSMGVKHFY----TDPKQCKEELDFIIST  241 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHH-HHTTCEEEEECSSSTTH--HHH-------HHTTCSEEE----SSGGGCCSCEEEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCCHHHH--HHH-------HhcCCCeec----CCHHHHhcCCCEEEEC
Confidence            478999999999999999985 89999999999876542  122       222322111    2233333378999888


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      +....     .-...++.++++..++.++.
T Consensus       242 ~g~~~-----~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          242 IPTHY-----DLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             CCSCC-----CHHHHHTTEEEEEEEEECCC
T ss_pred             CCcHH-----HHHHHHHHHhcCCEEEEECC
Confidence            77431     12445566666666666643

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.09  E-value=0.0073  Score=51.35  Aligned_cols=95  Identities=17%  Similarity=0.182  Sum_probs=60.5

Q ss_pred             CCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH-HHHh-----hc
Q 020301          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVL-----RE  236 (328)
Q Consensus       164 ~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell-----~~  236 (328)
                      .|+++.|+| .|.||+.+++.+ +..|++|++.+++.... + ..       +..+..........+. +++.     ..
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~-~~~G~~V~~~~~~~~~~-~-~~-------~~~g~~~~~d~~~~~~~~~~~~~~~~~~  107 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIA-KMIGARIYTTAGSDAKR-E-ML-------SRLGVEYVGDSRSVDFADEILELTDGYG  107 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHHTCEEEEEESSHHHH-H-HH-------HTTCCSEEEETTCSTHHHHHHHHTTTCC
T ss_pred             CCCEEEEeeCCChHHHHHHHHH-HHcCCEEEEEeCCHHHH-H-HH-------HHcCCCEEeeCCcHHHHHHHHHHhCCCC
Confidence            578999999 699999999986 68899999999875432 1 11       1112211111111122 2222     14


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      .|+|+.+..  .+    .-+..++.|+++..+|+++..
T Consensus       108 ~D~vi~~~g--~~----~~~~~~~~l~~~G~~v~~g~~  139 (198)
T 1pqw_A          108 VDVVLNSLA--GE----AIQRGVQILAPGGRFIELGKK  139 (198)
T ss_dssp             EEEEEECCC--TH----HHHHHHHTEEEEEEEEECSCG
T ss_pred             CeEEEECCc--hH----HHHHHHHHhccCCEEEEEcCC
Confidence            799988764  22    235678889999999998753

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.09  E-value=0.025  Score=54.54  Aligned_cols=116  Identities=16%  Similarity=0.182  Sum_probs=65.6

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCc--------------hhHHHHHHhhhhhhhhcCCCCCcccc
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQ--------------ATRLEKFVTAYGQFLKANGEQPVTWK  225 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~-~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (328)
                      .++.|+++.|.|+|++|+.+|+.| ...|++|++ .|.+.              .+.+.++.+..+      ........
T Consensus       208 ~~l~g~~vaVqG~GnVG~~~a~~L-~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g------~i~~~~~a  280 (421)
T 2yfq_A          208 IKMEDAKIAVQGFGNVGTFTVKNI-ERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANK------TLIGFPGA  280 (421)
T ss_dssp             CCGGGSCEEEECCSHHHHHHHHHH-HHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHC------C-------
T ss_pred             CCccCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcC------CcccCCCc
Confidence            468999999999999999999997 589999994 45541              012222211111      00000000


Q ss_pred             ccCCHHHHh-hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020301          226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (328)
Q Consensus       226 ~~~~l~ell-~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i  291 (328)
                      ...+.++++ ..||+++-|..     .+.|+.+...+++ ..+++-.+-|++- .++- +.|++..+
T Consensus       281 ~~i~~~~~~~~~~DIliP~A~-----~n~i~~~~A~~l~-ak~VvEgAN~P~t-~ea~-~il~~~GI  339 (421)
T 2yfq_A          281 ERITDEEFWTKEYDIIVPAAL-----ENVITGERAKTIN-AKLVCEAANGPTT-PEGD-KVLTERGI  339 (421)
T ss_dssp             --------------CEEECSC-----SSCSCHHHHTTCC-CSEEECCSSSCSC-HHHH-HHHHHHTC
T ss_pred             eEeCccchhcCCccEEEEcCC-----cCcCCcccHHHcC-CeEEEeCCccccC-HHHH-HHHHHCCC
Confidence            111223433 36999988854     6678888888884 7788888999874 3333 44444334

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.08  E-value=0.015  Score=50.58  Aligned_cols=76  Identities=12%  Similarity=0.117  Sum_probs=51.2

Q ss_pred             cccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCC-CCcc-ccccCCHHHHhhcC
Q 020301          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVT-WKRASSMDEVLREA  237 (328)
Q Consensus       161 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~l~ell~~a  237 (328)
                      ..+.|+++.|.|. |.||+.+++.|+ .-|.+|++.+|+..... +..        ..+. .... ... .++.+.+..+
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~-~~G~~V~~~~R~~~~~~-~~~--------~~~~~~~~~~Dl~-~~~~~~~~~~   85 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELK-NKGHEPVAMVRNEEQGP-ELR--------ERGASDIVVANLE-EDFSHAFASI   85 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSGGGHH-HHH--------HTTCSEEEECCTT-SCCGGGGTTC
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHH-hCCCeEEEEECChHHHH-HHH--------hCCCceEEEcccH-HHHHHHHcCC
Confidence            5799999999998 999999999985 67999999999875421 111        1111 1110 111 5677889999


Q ss_pred             CEEEEcCCCC
Q 020301          238 DVISLHPVLD  247 (328)
Q Consensus       238 DiV~l~~plt  247 (328)
                      |+|+.+....
T Consensus        86 D~vi~~ag~~   95 (236)
T 3e8x_A           86 DAVVFAAGSG   95 (236)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEECCCCC
Confidence            9999888754

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=96.08  E-value=0.0093  Score=55.48  Aligned_cols=62  Identities=13%  Similarity=0.185  Sum_probs=45.6

Q ss_pred             CCCEEEEEecCHHHH-HHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc---CC
Q 020301          164 KGQTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---AD  238 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~-~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aD  238 (328)
                      .-.++||||+|.||+ ..++.+.+.-+++|. ++|++...                    .+...+.+++++++.   .|
T Consensus        24 ~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~--------------------~g~~~~~~~~~ll~~~~~vD   83 (330)
T 4ew6_A           24 SPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV--------------------EGVNSYTTIEAMLDAEPSID   83 (330)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC--------------------TTSEEESSHHHHHHHCTTCC
T ss_pred             CCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh--------------------cCCCccCCHHHHHhCCCCCC
Confidence            346899999999998 688876433478865 56776431                    112245799999976   89


Q ss_pred             EEEEcCC
Q 020301          239 VISLHPV  245 (328)
Q Consensus       239 iV~l~~p  245 (328)
                      +|+++.|
T Consensus        84 ~V~i~tp   90 (330)
T 4ew6_A           84 AVSLCMP   90 (330)
T ss_dssp             EEEECSC
T ss_pred             EEEEeCC
Confidence            9999999

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.07  E-value=0.0091  Score=55.41  Aligned_cols=115  Identities=12%  Similarity=0.126  Sum_probs=71.8

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh----cCCE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR----EADV  239 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~----~aDi  239 (328)
                      .|++|.|+|.|.||...++.+ +.+|++|++.+++....  ++..       +-|....-.....++.+.+.    ..|+
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~~~~~--~~~~-------~lGa~~~i~~~~~~~~~~~~~~~g~~d~  235 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYA-RAMGLRVAAVDIDDAKL--NLAR-------RLGAEVAVNARDTDPAAWLQKEIGGAHG  235 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHH-HHTTCEEEEEESCHHHH--HHHH-------HTTCSEEEETTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeCCHHHH--HHHH-------HcCCCEEEeCCCcCHHHHHHHhCCCCCE
Confidence            578999999999999999985 89999999999876532  1222       22322111111124433333    5799


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCC------------------------cccCHHHHHHHHHcCCccE
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG------------------------PVIDEVALVEHLKQNPMFR  293 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG------------------------~~vde~aL~~aL~~g~i~g  293 (328)
                      |+.+... +++    -...++.++++..++.++-.                        ..-+.+.+.+.+++|++.-
T Consensus       236 vid~~g~-~~~----~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~  308 (340)
T 3s2e_A          236 VLVTAVS-PKA----FSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIRGSIVGTRSDLQESLDFAAHGDVKA  308 (340)
T ss_dssp             EEESSCC-HHH----HHHHHHHEEEEEEEEECSCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSCCC
T ss_pred             EEEeCCC-HHH----HHHHHHHhccCCEEEEeCCCCCCCCCCHHHHHhCCeEEEEEecCCHHHHHHHHHHHHhCCCCc
Confidence            9888763 221    24556677777777776421                        1123456777788887763

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=96.07  E-value=0.0098  Score=56.29  Aligned_cols=87  Identities=13%  Similarity=0.114  Sum_probs=63.9

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      -.++-|+|.|.+|+.+|+.+ +.+|++|.++|+++...                          + .+-+..+|-+....
T Consensus       199 ~~~L~I~GaGhva~aLa~la-~~lgf~V~v~D~R~~~~--------------------------~-~~~fp~a~~v~~~~  250 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFA-SNVGFYTVVTDWRPNQC--------------------------E-KHFFPDADEIIVDF  250 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHH-HHHTEEEEEEESCGGGG--------------------------C-GGGCTTCSEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHCCCeEEEECCCcccc--------------------------c-cccCCCceEEecCC
Confidence            35799999999999999995 79999999999875421                          1 11244566555444


Q ss_pred             CCChhhhccccHHHHhc--CCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          245 VLDKTTYHLINKERLAT--MKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       245 plt~~t~~li~~~~~~~--mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      |          .+.+..  +.+++++|=..++.-.|...|..+|++.
T Consensus       251 p----------~~~~~~~~~~~~t~vvv~TH~h~~D~~~L~~aL~~~  287 (362)
T 3on5_A          251 P----------ADFLRKFLIRPDDFVLIMTHHFQKDQEILHFLLEKE  287 (362)
T ss_dssp             H----------HHHHHHSCCCTTCEEEECCSCHHHHHHHHHHHSSSC
T ss_pred             H----------HHHHhhcCCCCCeEEEEEeCCchhhHHHHHHHhcCC
Confidence            4          233343  5678888888899889999999888763

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=96.06  E-value=0.017  Score=56.09  Aligned_cols=119  Identities=14%  Similarity=0.144  Sum_probs=71.1

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEc--------CCch--hHHHHHHhhh-------hhhhhcCCCCCcc
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD--------LYQA--TRLEKFVTAY-------GQFLKANGEQPVT  223 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d--------~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~  223 (328)
                      .++.|+|+.|=|+|++|+.+|+.| ...|++|++.+        +.--  ..+....+..       .......+..   
T Consensus       231 ~~l~Gk~vaVQG~GnVG~~aa~~L-~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~---  306 (450)
T 4fcc_A          231 MGFEGMRVSVSGSGNVAQYAIEKA-MEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLV---  306 (450)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCE---
T ss_pred             CCcCCCEEEEeCCChHHHHHHHHH-HhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcE---
Confidence            468999999999999999999997 68999998754        2210  1111111000       0000000100   


Q ss_pred             ccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCC--cEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          224 WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKE--AILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       224 ~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~g--a~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      .....++  +-..||+++-|     .+.+.||.+...+++.+  .++++-|-+.+-.+ | .+.|.+..|.
T Consensus       307 ~~~~~~i--~~~~~DI~iPc-----Al~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~e-A-~~iL~~rGIl  368 (450)
T 4fcc_A          307 YLEGQQP--WSVPVDIALPC-----ATQNELDVDAAHQLIANGVKAVAEGANMPTTIE-A-TELFQQAGVL  368 (450)
T ss_dssp             EEETCCG--GGSCCSEEEEC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-H-HHHHHHTTCE
T ss_pred             EecCccc--ccCCccEEeec-----cccccccHHHHHHHHhcCceEEecCCCCCCCHH-H-HHHHHHCCCE
Confidence            0001111  22369999877     34678999988888754  58888888886443 3 2556665554

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=96.05  E-value=0.0069  Score=56.96  Aligned_cols=66  Identities=15%  Similarity=0.159  Sum_probs=46.3

Q ss_pred             CEEEEEecCHHHHH-HHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc--CCEEE
Q 020301          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~~-vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~  241 (328)
                      .++||||+|.||+. .++.+.+.-+++|. ++|+++....    +.|       +    ....+.+++++++.  .|+|+
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~----~~~-------~----~~~~~~~~~~ll~~~~vD~V~   70 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSK----ERY-------P----QASIVRSFKELTEDPEIDLIV   70 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGG----TTC-------T----TSEEESCSHHHHTCTTCCEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH----HhC-------C----CCceECCHHHHhcCCCCCEEE
Confidence            47999999999997 67765333378876 6788754311    111       1    12345799999987  89999


Q ss_pred             EcCCC
Q 020301          242 LHPVL  246 (328)
Q Consensus       242 l~~pl  246 (328)
                      +|.|.
T Consensus        71 i~tp~   75 (362)
T 3fhl_A           71 VNTPD   75 (362)
T ss_dssp             ECSCG
T ss_pred             EeCCh
Confidence            99994

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.04  E-value=0.025  Score=54.77  Aligned_cols=87  Identities=13%  Similarity=0.211  Sum_probs=64.6

Q ss_pred             ccCCCEEEEEecC----------HHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH
Q 020301          162 LLKGQTVGVIGAG----------RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (328)
Q Consensus       162 ~l~g~tvgIiG~G----------~IG~~vA~~l~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (328)
                      .+.|++|+|+|+-          +-...+++.| ... |++|.+|||.....                      ....++
T Consensus       312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L-~~~~g~~V~~~DP~~~~~----------------------~~~~~~  368 (431)
T 3ojo_A          312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELL-NQEPDIEVCAYDPHVELD----------------------FVEHDM  368 (431)
T ss_dssp             HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHH-HHSTTCEEEEECSSCCCT----------------------TBCSTT
T ss_pred             hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHH-HhhcCCEEEEECCCcccc----------------------cccCCH
Confidence            4789999999984          3467889987 577 99999999976421                      123578


Q ss_pred             HHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       231 ~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      ++.++.||.|+++.+ -++.+. ++-+.++.|+ +.+++++ |+-
T Consensus       369 ~~~~~~ad~vvi~t~-~~~f~~-~d~~~~~~~~-~~~i~D~-r~~  409 (431)
T 3ojo_A          369 SHAVKDASLVLILSD-HSEFKN-LSDSHFDKMK-HKVIFDT-KNV  409 (431)
T ss_dssp             HHHHTTCSEEEECSC-CGGGTS-CCGGGGTTCS-SCEEEES-SCC
T ss_pred             HHHHhCCCEEEEecC-CHHHhc-cCHHHHHhCC-CCEEEEC-CCC
Confidence            999999999999987 344444 4555567787 6788886 543

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.04  E-value=0.025  Score=54.54  Aligned_cols=115  Identities=18%  Similarity=0.249  Sum_probs=73.4

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCc---------hhHHHHHHhhhhhhhhcCC-CCCccccccCC
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQ---------ATRLEKFVTAYGQFLKANG-EQPVTWKRASS  229 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~~---------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  229 (328)
                      .++.|+|+.|-|+|++|+.+|+.| ...|++|+ +.|.+-         ...+.++.       +..+ ..... ....+
T Consensus       217 ~~l~g~~vaVqG~GnVG~~aa~~l-~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~-------~~~g~i~~~~-a~~~~  287 (424)
T 3k92_A          217 IKLQNARIIIQGFGNAGSFLAKFM-HDAGAKVIGISDANGGLYNPDGLDIPYLLDKR-------DSFGMVTNLF-TDVIT  287 (424)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHH-HHHTCEEEEEECSSCEEECTTCCCHHHHHHHC-------CSSSCCGGGC-SCCBC
T ss_pred             CCcccCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCcEECCCCCCHHHHHHHH-------HHhCCCCCCC-cEEec
Confidence            468999999999999999999997 57899986 445441         11111111       1111 11111 11234


Q ss_pred             HHHHh-hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          230 MDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       230 l~ell-~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      -++++ ..||+++-|..     .+.|+.+...+++ -.+++-.+-+++- .+| .+.|.+..|.
T Consensus       288 ~~~i~~~~~DIliPcA~-----~n~I~~~~a~~l~-ak~V~EgAN~p~t-~eA-~~iL~~rGI~  343 (424)
T 3k92_A          288 NEELLEKDCDILVPAAI-----SNQITAKNAHNIQ-ASIVVERANGPTT-IDA-TKILNERGVL  343 (424)
T ss_dssp             HHHHHHSCCSEEEECSC-----SSCBCTTTGGGCC-CSEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             CccceeccccEEeecCc-----ccccChhhHhhcC-ceEEEcCCCCCCC-HHH-HHHHHHCCCE
Confidence            45654 46999987754     5778888888884 6688888999863 433 4566665553

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=96.01  E-value=0.0098  Score=55.60  Aligned_cols=68  Identities=18%  Similarity=0.282  Sum_probs=45.5

Q ss_pred             CEEEEEecCHHHH-HHHHHHHhcC-CcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc--CCEE
Q 020301          166 QTVGVIGAGRIGS-AYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (328)
Q Consensus       166 ~tvgIiG~G~IG~-~vA~~l~~~f-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV  240 (328)
                      .++||||+|.||+ ..++.+ +.. +++|. ++|++..   +++.+.|+       ..  +...+.++++++..  .|+|
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~---~~~a~~~~-------~~--~~~~~~~~~~ll~~~~~D~V   69 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYV-MIRETLEVKTIFDLHVN---EKAAAPFK-------EK--GVNFTADLNELLTDPEIELI   69 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHH-TTCTTEEEEEEECTTCC---HHHHHHHH-------TT--TCEEESCTHHHHSCTTCCEE
T ss_pred             eEEEEEccCHHHHHHHHHHH-hhCCCeEEEEEECCCHH---HHHHHhhC-------CC--CCeEECCHHHHhcCCCCCEE
Confidence            3799999999999 566765 344 78875 6787722   22222211       00  12245799999986  8999


Q ss_pred             EEcCCC
Q 020301          241 SLHPVL  246 (328)
Q Consensus       241 ~l~~pl  246 (328)
                      +++.|.
T Consensus        70 ~i~tp~   75 (349)
T 3i23_A           70 TICTPA   75 (349)
T ss_dssp             EECSCG
T ss_pred             EEeCCc
Confidence            999994

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.01  E-value=0.0056  Score=55.81  Aligned_cols=40  Identities=18%  Similarity=0.172  Sum_probs=36.1

Q ss_pred             ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ..++.|++|.|||.|.+|.+.++.| ...|++|.++++...
T Consensus         8 ~~~l~~k~VLVVGgG~va~rka~~L-l~~Ga~VtViap~~~   47 (274)
T 1kyq_A            8 AHQLKDKRILLIGGGEVGLTRLYKL-MPTGCKLTLVSPDLH   47 (274)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHH-GGGTCEEEEEEEEEC
T ss_pred             EEEcCCCEEEEECCcHHHHHHHHHH-HhCCCEEEEEcCCCC
Confidence            4578999999999999999999997 689999999998764

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.01  E-value=0.028  Score=52.88  Aligned_cols=94  Identities=17%  Similarity=0.124  Sum_probs=61.6

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc--cCCHHHHhh-----
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR-----  235 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~-----  235 (328)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.+++....  ++..       +-|....-...  ..++.+.+.     
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~~~~~--~~~~-------~lGa~~vi~~~~~~~~~~~~~~~~~~~  260 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGC-KAAGAARIIGVDINKDKF--AKAK-------EVGATECVNPQDYKKPIQEVLTEMSNG  260 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGH--HHHH-------HTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHH--HHHH-------HhCCceEecccccchhHHHHHHHHhCC
Confidence            578999999999999999985 79999 899999876542  1111       22321111111  123444433     


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCC-cEEEEcC
Q 020301          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCS  272 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~g-a~lIN~a  272 (328)
                      ..|+|+-++.. +++    -...++.++++ ..++.++
T Consensus       261 g~D~vid~~g~-~~~----~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          261 GVDFSFEVIGR-LDT----MVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHHBCTTTCEEEECS
T ss_pred             CCcEEEECCCC-HHH----HHHHHHHhhcCCcEEEEec
Confidence            47999998873 222    24567788888 8888775

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.01  E-value=0.039  Score=53.70  Aligned_cols=96  Identities=15%  Similarity=0.154  Sum_probs=66.4

Q ss_pred             cccCCCEEEEEecC----------HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH
Q 020301          161 NLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (328)
Q Consensus       161 ~~l~g~tvgIiG~G----------~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (328)
                      ..+.|++|+|+|+-          .=...+++.| ...|++|.+|||...+....   .|+          .......++
T Consensus       314 ~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L-~~~g~~v~~~DP~~~~~~~~---~~~----------~~~~~~~~~  379 (450)
T 3gg2_A          314 GNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKL-LEVGCRVRVYDPVAMKEAQK---RLG----------DKVEYTTDM  379 (450)
T ss_dssp             TCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSCHHHHHH---HHG----------GGSEECSSH
T ss_pred             ccCCCCEEEEEeeeeCCCCcccccChHHHHHHHH-HHCCCEEEEECCCCcHHHHH---hcC----------ccceecCCH
Confidence            46899999999984          3467889987 68999999999987532211   121          011234688


Q ss_pred             HHHhhcCCEEEEcCCCChhhhccccHHHH-hcCCCCcEEEEcCCC
Q 020301          231 DEVLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNCSRG  274 (328)
Q Consensus       231 ~ell~~aDiV~l~~plt~~t~~li~~~~~-~~mk~ga~lIN~aRG  274 (328)
                      ++.++.||.|+++.+ -++.+. ++-+.+ +.|+ +.+++++ |+
T Consensus       380 ~~~~~~ad~~vi~t~-~~~f~~-~~~~~~~~~~~-~~~i~D~-r~  420 (450)
T 3gg2_A          380 YDAVRGAEALFHVTE-WKEFRM-PDWSALSQAMA-ASLVIDG-RN  420 (450)
T ss_dssp             HHHTTTCSCEEECSC-CGGGSS-CCHHHHHHHSS-SCEEEES-SC
T ss_pred             HHHhcCCCEEEEccC-CHHHhh-cCHHHHHHhcC-CCEEEEC-CC
Confidence            999999999999987 344444 454444 4566 6688986 54

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=96.00  E-value=0.012  Score=55.14  Aligned_cols=32  Identities=25%  Similarity=0.410  Sum_probs=25.4

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~  198 (328)
                      +|||+|+|+||+.+.|.+...-.++|.+.+-.
T Consensus         3 kVgI~G~G~iGr~l~R~l~~~~~veivain~~   34 (334)
T 3cmc_O            3 KVGINGFGRIGRNVFRAALKNPDIEVVAVNDL   34 (334)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence            79999999999999998643346888766543

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=95.98  E-value=0.021  Score=53.14  Aligned_cols=68  Identities=16%  Similarity=0.253  Sum_probs=48.2

Q ss_pred             CEEEEEecC-HHHHHHHHHHHhcC--CcEE-EEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCE
Q 020301          166 QTVGVIGAG-RIGSAYARMMVEGF--KMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (328)
Q Consensus       166 ~tvgIiG~G-~IG~~vA~~l~~~f--g~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  239 (328)
                      .++||||+| .+|+..++.+ +..  ++++ .++|+++.. .+++.+.|       +.    ...+.+++++++  +.|+
T Consensus        19 irvgiIG~G~~~g~~~~~~l-~~~~~~~~lvav~d~~~~~-~~~~a~~~-------~~----~~~~~~~~~ll~~~~vD~   85 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPAL-KNLSHLFEITAVTSRTRSH-AEEFAKMV-------GN----PAVFDSYEELLESGLVDA   85 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTTTTTEEEEEEECSSHHH-HHHHHHHH-------SS----CEEESCHHHHHHSSCCSE
T ss_pred             eeEEEEecCHHHHHHHHHHH-HhCCCceEEEEEEcCCHHH-HHHHHHHh-------CC----CcccCCHHHHhcCCCCCE
Confidence            479999999 8999999987 454  6776 577887643 23333333       11    123579999997  5899


Q ss_pred             EEEcCCC
Q 020301          240 ISLHPVL  246 (328)
Q Consensus       240 V~l~~pl  246 (328)
                      |+++.|.
T Consensus        86 V~i~tp~   92 (340)
T 1zh8_A           86 VDLTLPV   92 (340)
T ss_dssp             EEECCCG
T ss_pred             EEEeCCc
Confidence            9999993

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.98  E-value=0.008  Score=56.73  Aligned_cols=93  Identities=18%  Similarity=0.307  Sum_probs=59.6

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC---HHHHhhcCCEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREADVI  240 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~aDiV  240 (328)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.+++....  ++...+       |....  ....+   .+++....|+|
T Consensus       194 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~Vi~~~~~~~~~--~~a~~l-------Ga~~v--i~~~~~~~~~~~~~g~Dvv  261 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLA-HAMGAHVVAFTTSEAKR--EAAKAL-------GADEV--VNSRNADEMAAHLKSFDFI  261 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSGGGH--HHHHHH-------TCSEE--EETTCHHHHHTTTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH--HHHHHc-------CCcEE--eccccHHHHHHhhcCCCEE
Confidence            478999999999999999984 89999999999876542  111122       22111  01111   22333568999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      +-++.....     -+..++.++++..+|.++.
T Consensus       262 id~~g~~~~-----~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          262 LNTVAAPHN-----LDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             EECCSSCCC-----HHHHHTTEEEEEEEEECCC
T ss_pred             EECCCCHHH-----HHHHHHHhccCCEEEEecc
Confidence            988874221     2455677777777777653

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.98  E-value=0.027  Score=52.97  Aligned_cols=94  Identities=15%  Similarity=0.042  Sum_probs=61.4

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc--cCCHHHHhh-----
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR-----  235 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~-----  235 (328)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.+++....  ++..       +-|....-...  ..++.+.+.     
T Consensus       191 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~--~~a~-------~lGa~~vi~~~~~~~~~~~~i~~~t~g  260 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGC-KAAGASRIIGVGTHKDKF--PKAI-------ELGATECLNPKDYDKPIYEVICEKTNG  260 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGGH--HHHH-------HTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHHHH--HHHH-------HcCCcEEEecccccchHHHHHHHHhCC
Confidence            578999999999999999984 78999 899999876542  1112       22322111111  023444333     


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCC-cEEEEcC
Q 020301          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCS  272 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~g-a~lIN~a  272 (328)
                      ..|+|+-++.. +++    -...++.++++ ..+|.++
T Consensus       261 g~Dvvid~~g~-~~~----~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          261 GVDYAVECAGR-IET----MMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHTBCTTTCEEEECC
T ss_pred             CCCEEEECCCC-HHH----HHHHHHHHhcCCCEEEEEc
Confidence            48999988863 222    25667888888 8888775

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.97  E-value=0.035  Score=51.68  Aligned_cols=95  Identities=14%  Similarity=0.077  Sum_probs=61.4

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc--cCCHHHH---h----
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEV---L----  234 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~el---l----  234 (328)
                      .|++|.|+|.|.+|...++.+ +.+|++|++.+++....  ++...+       |....-...  ....+++   .    
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~~~~~--~~~~~l-------Ga~~~~~~~~~~~~~~~i~~~~~~~~  237 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAA-KAYGAFVVCTARSPRRL--EVAKNC-------GADVTLVVDPAKEEESSIIERIRSAI  237 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH--HHHHHT-------TCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEcCCHHHH--HHHHHh-------CCCEEEcCcccccHHHHHHHHhcccc
Confidence            478999999999999999985 79999999999876432  111222       221111001  1112232   3    


Q ss_pred             -hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          235 -READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       235 -~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                       ...|+|+.++.. +.+    -...++.++++..+|.++-
T Consensus       238 g~g~D~vid~~g~-~~~----~~~~~~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          238 GDLPNVTIDCSGN-EKC----ITIGINITRTGGTLMLVGM  272 (352)
T ss_dssp             SSCCSEEEECSCC-HHH----HHHHHHHSCTTCEEEECSC
T ss_pred             CCCCCEEEECCCC-HHH----HHHHHHHHhcCCEEEEEec
Confidence             258999998873 221    2456788899999988864

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.96  E-value=0.011  Score=55.64  Aligned_cols=94  Identities=19%  Similarity=0.203  Sum_probs=61.2

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc------
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE------  236 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~------  236 (328)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.+++....  ++...+       |..........++.+.+.+      
T Consensus       182 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~--~~a~~l-------Ga~~vi~~~~~~~~~~i~~~~~~~~  251 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLA-RLAGATTVILSTRQATKR--RLAEEV-------GATATVDPSAGDVVEAIAGPVGLVP  251 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCHHHH--HHHHHH-------TCSEEECTTSSCHHHHHHSTTSSST
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH--HHHHHc-------CCCEEECCCCcCHHHHHHhhhhccC
Confidence            478999999999999999984 89999 899999876432  222222       3221111122345444443      


Q ss_pred             --CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          237 --ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       237 --aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                        .|+|+-++.. +++    -...++.++++..++.++
T Consensus       252 gg~Dvvid~~G~-~~~----~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          252 GGVDVVIECAGV-AET----VKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             TCEEEEEECSCC-HHH----HHHHHHHEEEEEEEEECS
T ss_pred             CCCCEEEECCCC-HHH----HHHHHHHhccCCEEEEEe
Confidence              7999988762 221    245667778888887775

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.93  E-value=0.03  Score=50.85  Aligned_cols=109  Identities=16%  Similarity=0.186  Sum_probs=65.1

Q ss_pred             cccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccc-cccC---CHHHHhh
Q 020301          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRAS---SMDEVLR  235 (328)
Q Consensus       161 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~l~ell~  235 (328)
                      .++.||++.|.|. |-||+++|+.|+ .-|++|++.+++.....+...+.    .+..+...... ....   +++++++
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~~~Dv~d~~~v~~~~~  117 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFA-KEGANIAIAYLDEEGDANETKQY----VEKEGVKCVLLPGDLSDEQHCKDIVQ  117 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHH----HHTTTCCEEEEESCTTSHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCchHHHHHHHHH----HHhcCCcEEEEECCCCCHHHHHHHHH
Confidence            4689999999997 679999999985 77999999998865432221111    11111110000 0112   2334443


Q ss_pred             -------cCCEEEEcCCCCh----------h-hhc----------cccHHHHhcCCCCcEEEEcCCC
Q 020301          236 -------EADVISLHPVLDK----------T-TYH----------LINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       236 -------~aDiV~l~~plt~----------~-t~~----------li~~~~~~~mk~ga~lIN~aRG  274 (328)
                             .-|+++.+.-...          + -..          .+.+..+..|+++..+||++..
T Consensus       118 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~  184 (291)
T 3ijr_A          118 ETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASI  184 (291)
T ss_dssp             HHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCT
T ss_pred             HHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEech
Confidence                   6799988753221          1 001          1235567788888899999864

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.92  E-value=0.019  Score=53.96  Aligned_cols=113  Identities=20%  Similarity=0.244  Sum_probs=64.2

Q ss_pred             cCCCEEEEEec-CHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          163 LKGQTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       163 l~g~tvgIiG~-G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      +.+++|+|||. |.+|+.+|..++ .+|  -+|..+|...... +.......    +............++.+.++.||+
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~-~~g~~~evvLiDi~~~k~-~g~a~DL~----~~~~~~~~i~~t~d~~~al~dADv   79 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAA-MMRLTPNLCLYDPFAVGL-EGVAEEIR----HCGFEGLNLTFTSDIKEALTDAKY   79 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHH-HTTCCSCEEEECSCHHHH-HHHHHHHH----HHCCTTCCCEEESCHHHHHTTEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHH-hcCCCCEEEEEeCCchhH-HHHHHhhh----hCcCCCCceEEcCCHHHHhCCCCE
Confidence            45789999998 999999998763 555  4899999875421 21111111    101111112223578888999999


Q ss_pred             EEEcCCCChhhhcc-----c--cH-------HHHhcCCCCcE-EEEcCCCcccCHHHHHH
Q 020301          240 ISLHPVLDKTTYHL-----I--NK-------ERLATMKKEAI-LVNCSRGPVIDEVALVE  284 (328)
Q Consensus       240 V~l~~plt~~t~~l-----i--~~-------~~~~~mk~ga~-lIN~aRG~~vde~aL~~  284 (328)
                      |+++.. ++...++     +  |.       +.+.+..|+++ +++++  ..+|.-..+-
T Consensus        80 VvitaG-~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvs--NPvd~~t~i~  136 (343)
T 3fi9_A           80 IVSSGG-APRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF--NPADITGLVT  136 (343)
T ss_dssp             EEECCC--------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECS--SSHHHHHHHH
T ss_pred             EEEccC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEec--CchHHHHHHH
Confidence            999864 2322221     1  11       12233347785 88985  5666555443

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=95.92  E-value=0.02  Score=52.83  Aligned_cols=110  Identities=14%  Similarity=0.085  Sum_probs=69.7

Q ss_pred             cccCCCEEEEE-ec-CHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--
Q 020301          161 NLLKGQTVGVI-GA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--  235 (328)
Q Consensus       161 ~~l~g~tvgIi-G~-G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--  235 (328)
                      .-+..+++.|| |+ |+.|+.+++.+ +.+|++++ ..+|....                 ..-.+...+.+++|+.+  
T Consensus         9 ~l~~~~siaVV~Gasg~~G~~~~~~l-~~~G~~~v~~VnP~~~g-----------------~~i~G~~vy~sl~el~~~~   70 (305)
T 2fp4_A            9 LYVDKNTKVICQGFTGKQGTFHSQQA-LEYGTNLVGGTTPGKGG-----------------KTHLGLPVFNTVKEAKEQT   70 (305)
T ss_dssp             GCCCTTCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTT-----------------CEETTEEEESSHHHHHHHH
T ss_pred             HHhCCCcEEEEECCCCCHHHHHHHHH-HHCCCcEEEEeCCCcCc-----------------ceECCeeeechHHHhhhcC
Confidence            34667889999 99 99999999987 57888843 45554210                 00112334568999988  


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcC-Ccc
Q 020301          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQN-PMF  292 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~aL~~g-~i~  292 (328)
                      ..|++++++|. +.....+ ++..+. .- ..+|+.+-|-- -|+..|.+..++. .+.
T Consensus        71 ~vD~avI~vP~-~~~~~~~-~e~i~~-Gi-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~  125 (305)
T 2fp4_A           71 GATASVIYVPP-PFAAAAI-NEAIDA-EV-PLVVCITEGIPQQDMVRVKHRLLRQGKTR  125 (305)
T ss_dssp             CCCEEEECCCH-HHHHHHH-HHHHHT-TC-SEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             CCCEEEEecCH-HHHHHHH-HHHHHC-CC-CEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence            89999999992 2333433 333332 11 24466766643 2344788888876 444

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.91  E-value=0.035  Score=52.16  Aligned_cols=94  Identities=16%  Similarity=0.068  Sum_probs=61.1

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc--cCCHHHHhh-----
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR-----  235 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~-----  235 (328)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.+++....  ++...+       |....-...  ..++.+.+.     
T Consensus       195 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~--~~a~~l-------Ga~~vi~~~~~~~~~~~~v~~~~~~  264 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGC-KIAGASRIIAIDINGEKF--PKAKAL-------GATDCLNPRELDKPVQDVITELTAG  264 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGH--HHHHHT-------TCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHH--HHHHHh-------CCcEEEccccccchHHHHHHHHhCC
Confidence            588999999999999999984 89999 899999876542  111222       322111111  123444333     


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCC-cEEEEcC
Q 020301          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCS  272 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~g-a~lIN~a  272 (328)
                      ..|+|+-++.. +++    -...++.++++ ..++.++
T Consensus       265 g~Dvvid~~G~-~~~----~~~~~~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          265 GVDYSLDCAGT-AQT----LKAAVDCTVLGWGSCTVVG  297 (376)
T ss_dssp             CBSEEEESSCC-HHH----HHHHHHTBCTTTCEEEECC
T ss_pred             CccEEEECCCC-HHH----HHHHHHHhhcCCCEEEEEC
Confidence            48999988763 222    24667888888 7777765

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=95.90  E-value=0.0074  Score=58.16  Aligned_cols=39  Identities=21%  Similarity=0.452  Sum_probs=34.9

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      -+.|++|+|+|-|.+|+.+++.+ +.+|.+|+++|+++..
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa-~~lG~~v~v~d~~~~~   70 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAA-QSMGYRVAVLDPDPAS   70 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEECCCCcC
Confidence            46899999999999999999995 7999999999987654

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.90  E-value=0.017  Score=52.38  Aligned_cols=80  Identities=13%  Similarity=0.139  Sum_probs=51.0

Q ss_pred             ccCCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCc--cccccCCHHHHhhcCC
Q 020301          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREAD  238 (328)
Q Consensus       162 ~l~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aD  238 (328)
                      ++.|+++.|+| .|-||+.+++.| ...|++|++++|+... .++..+.+..   ..+....  ......+++++++++|
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L-~~~G~~V~i~~R~~~~-~~~l~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~D  190 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALL-AGEGAEVVLCGRKLDK-AQAAADSVNK---RFKVNVTAAETADDASRAEAVKGAH  190 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHHH-HHHHHHHHHH---HHTCCCEEEECCSHHHHHHHTTTCS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEECCHHH-HHHHHHHHHh---cCCcEEEEecCCCHHHHHHHHHhCC
Confidence            46789999999 999999999997 4779999999998643 2222221110   0011111  0111123566778889


Q ss_pred             EEEEcCCC
Q 020301          239 VISLHPVL  246 (328)
Q Consensus       239 iV~l~~pl  246 (328)
                      +|+.+.+.
T Consensus       191 vlVn~ag~  198 (287)
T 1lu9_A          191 FVFTAGAI  198 (287)
T ss_dssp             EEEECCCT
T ss_pred             EEEECCCc
Confidence            99888864

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=95.88  E-value=0.029  Score=52.99  Aligned_cols=96  Identities=13%  Similarity=0.248  Sum_probs=55.7

Q ss_pred             CCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCC--CCccccccCCHHHHhhcCCEE
Q 020301          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       164 ~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ...+|||+| +|.||+.+++.|...=.+++.+........ .++.+.|+.+ .  +.  ...   ...+ ++.+..+|+|
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g-~~~~~~~~~~-~--~~v~~dl---~~~~-~~~~~~vDvV   86 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAG-QSMESVFPHL-R--AQKLPTL---VSVK-DADFSTVDAV   86 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTT-SCHHHHCGGG-T--TSCCCCC---BCGG-GCCGGGCSEE
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcC-CCHHHhCchh-c--Ccccccc---eecc-hhHhcCCCEE
Confidence            346899999 999999999997533346887775433211 1111122111 1  10  011   1112 4566789999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      ++|+|....      .+.....+.|+.+|+.+-
T Consensus        87 f~atp~~~s------~~~a~~~~aG~~VId~sa  113 (359)
T 1xyg_A           87 FCCLPHGTT------QEIIKELPTALKIVDLSA  113 (359)
T ss_dssp             EECCCTTTH------HHHHHTSCTTCEEEECSS
T ss_pred             EEcCCchhH------HHHHHHHhCCCEEEECCc
Confidence            999984322      222222267899999875

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=95.87  E-value=0.018  Score=54.82  Aligned_cols=73  Identities=12%  Similarity=0.160  Sum_probs=49.6

Q ss_pred             CCEEEEEecCH---HHHHHHHHHHhcCCcEEE--EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc---
Q 020301          165 GQTVGVIGAGR---IGSAYARMMVEGFKMNLI--YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---  236 (328)
Q Consensus       165 g~tvgIiG~G~---IG~~vA~~l~~~fg~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---  236 (328)
                      -.++||||+|.   ||+..+..+...-++++.  ++|+++... ++..+.|       +...  ...+.+++++++.   
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a-~~~a~~~-------g~~~--~~~~~~~~~ll~~~~~   81 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRG-SAFGEQL-------GVDS--ERCYADYLSMFEQEAR   81 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHH-HHHHHHT-------TCCG--GGBCSSHHHHHHHHTT
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHH-HHHHHHh-------CCCc--ceeeCCHHHHHhcccc
Confidence            45899999999   999988876433347877  468876532 2222222       2211  1245799999986   


Q ss_pred             ----CCEEEEcCCCC
Q 020301          237 ----ADVISLHPVLD  247 (328)
Q Consensus       237 ----aDiV~l~~plt  247 (328)
                          .|+|+++.|..
T Consensus        82 ~~~~vD~V~i~tp~~   96 (398)
T 3dty_A           82 RADGIQAVSIATPNG   96 (398)
T ss_dssp             CTTCCSEEEEESCGG
T ss_pred             cCCCCCEEEECCCcH
Confidence                89999999943

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=95.87  E-value=0.02  Score=53.65  Aligned_cols=80  Identities=18%  Similarity=0.176  Sum_probs=44.2

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHHh-----hhhhhhhcC-CCCCccccccCCHHHHhhcCCE
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVT-----AYGQFLKAN-GEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~-d~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      +|||+|+|.||+.+++.+...-++++.+. |+.+... .....     .|+.+.... ........-..+.++++..+|+
T Consensus         3 kVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~-~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv   81 (337)
T 1cf2_P            3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFE-ARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (337)
T ss_dssp             EEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHH-HHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             EEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHH-HHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence            79999999999999998754357887654 5442211 11110     000000000 0000000001256788889999


Q ss_pred             EEEcCCCC
Q 020301          240 ISLHPVLD  247 (328)
Q Consensus       240 V~l~~plt  247 (328)
                      |+.|.|..
T Consensus        82 V~~atp~~   89 (337)
T 1cf2_P           82 VIDCTPEG   89 (337)
T ss_dssp             EEECCSTT
T ss_pred             EEECCCch
Confidence            99999843

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.86  E-value=0.031  Score=52.42  Aligned_cols=94  Identities=17%  Similarity=0.128  Sum_probs=61.7

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc--cCCHHHHhh-----
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR-----  235 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~-----  235 (328)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.+++....  ++...+       |....-...  ..++.+.+.     
T Consensus       190 ~g~~VlV~GaG~vG~~avqla-~~~Ga~~Vi~~~~~~~~~--~~~~~l-------Ga~~vi~~~~~~~~~~~~v~~~~~~  259 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGC-KVAGASRIIGVDINKDKF--ARAKEF-------GATECINPQDFSKPIQEVLIEMTDG  259 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGGH--HHHHHH-------TCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHH--HHHHHc-------CCceEeccccccccHHHHHHHHhCC
Confidence            578999999999999999984 78999 899999876542  112222       221111111  123444333     


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCC-cEEEEcC
Q 020301          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCS  272 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~g-a~lIN~a  272 (328)
                      ..|+|+-++.. +++    -...++.++++ ..+|.++
T Consensus       260 g~D~vid~~g~-~~~----~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          260 GVDYSFECIGN-VKV----MRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHTBCTTTCEEEECS
T ss_pred             CCCEEEECCCc-HHH----HHHHHHhhccCCcEEEEEe
Confidence            48999998873 222    25667888988 8888776

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.85  E-value=0.031  Score=52.55  Aligned_cols=69  Identities=14%  Similarity=0.209  Sum_probs=47.3

Q ss_pred             CCEEEEEecCHHHH-HHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc--CCEE
Q 020301          165 GQTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (328)
Q Consensus       165 g~tvgIiG~G~IG~-~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV  240 (328)
                      -.++||||+|.+|. .++..+ +.-++++. ++|+++.. .+++.+.|       +.    ...+.+++++++.  .|+|
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~-~~~~~~lvav~d~~~~~-a~~~a~~~-------~~----~~~~~~~~~ll~~~~vD~V   92 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCL-LRAGARLAGFHEKDDAL-AAEFSAVY-------AD----ARRIATAEEILEDENIGLI   92 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHH-HHTTCEEEEEECSCHHH-HHHHHHHS-------SS----CCEESCHHHHHTCTTCCEE
T ss_pred             CcEEEEECcCHHHHHHHHHHh-hcCCcEEEEEEcCCHHH-HHHHHHHc-------CC----CcccCCHHHHhcCCCCCEE
Confidence            35899999999995 466665 45688855 67887643 22322222       11    1235799999986  8999


Q ss_pred             EEcCCC
Q 020301          241 SLHPVL  246 (328)
Q Consensus       241 ~l~~pl  246 (328)
                      +++.|.
T Consensus        93 ~I~tp~   98 (361)
T 3u3x_A           93 VSAAVS   98 (361)
T ss_dssp             EECCCH
T ss_pred             EEeCCh
Confidence            999993

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=95.82  E-value=0.0068  Score=53.09  Aligned_cols=67  Identities=15%  Similarity=0.212  Sum_probs=44.6

Q ss_pred             CEEEEEecCHHHHHHHHHH-HhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-cCCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMM-VEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l-~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV~l  242 (328)
                      ++++|||.|.+|+.+|+.+ ... |+++. ++|.++...-           +.  ..........+++++++ ..|+|++
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g-----------~~--i~gv~V~~~~dl~ell~~~ID~ViI  146 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVG-----------RP--VRGGVIEHVDLLPQRVPGRIEIALL  146 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTT-----------CE--ETTEEEEEGGGHHHHSTTTCCEEEE
T ss_pred             CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHh-----------hh--hcCCeeecHHhHHHHHHcCCCEEEE
Confidence            4799999999999999852 134 88866 5576654310           00  01112223568899887 5899999


Q ss_pred             cCCC
Q 020301          243 HPVL  246 (328)
Q Consensus       243 ~~pl  246 (328)
                      ++|.
T Consensus       147 A~Ps  150 (211)
T 2dt5_A          147 TVPR  150 (211)
T ss_dssp             CSCH
T ss_pred             eCCc
Confidence            9994

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=95.82  E-value=0.014  Score=54.63  Aligned_cols=69  Identities=12%  Similarity=0.147  Sum_probs=45.5

Q ss_pred             CEEEEEecCHHHHHHHHHHHh--c-----CCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc-
Q 020301          166 QTVGVIGAGRIGSAYARMMVE--G-----FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-  236 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~--~-----fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-  236 (328)
                      -+|||||+|.||+.-++.+++  .     .+++|. ++|+++.. .++..+.|       +..    ..+.+++++|+. 
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~-a~~~a~~~-------g~~----~~~~d~~~ll~~~   74 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEA-VRAAAGKL-------GWS----TTETDWRTLLERD   74 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHH-HHHHHHHH-------TCS----EEESCHHHHTTCT
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHH-HHHHHHHc-------CCC----cccCCHHHHhcCC
Confidence            479999999999987766532  1     134654 66887643 23333333       211    235799999965 


Q ss_pred             -CCEEEEcCCC
Q 020301          237 -ADVISLHPVL  246 (328)
Q Consensus       237 -aDiV~l~~pl  246 (328)
                       .|+|+++.|.
T Consensus        75 ~iDaV~I~tP~   85 (390)
T 4h3v_A           75 DVQLVDVCTPG   85 (390)
T ss_dssp             TCSEEEECSCG
T ss_pred             CCCEEEEeCCh
Confidence             7999999994

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.82  E-value=0.02  Score=53.45  Aligned_cols=95  Identities=17%  Similarity=0.133  Sum_probs=60.9

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc---cCCH-HHHh----
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSM-DEVL----  234 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l-~ell----  234 (328)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.+++....  ++..       +-|....-...   ..++ +++.    
T Consensus       171 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~--~~a~-------~lGa~~vi~~~~~~~~~~~~~i~~~~~  240 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVA-KAMGAAQVVVTDLSATRL--SKAK-------EIGADLVLQISKESPQEIARKVEGQLG  240 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHHH--HHHH-------HTTCSEEEECSSCCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH--HHHH-------HhCCCEEEcCcccccchHHHHHHHHhC
Confidence            478999999999999999984 79999 999999876432  1112       22321110000   0111 1222    


Q ss_pred             hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      ...|+|+-++.. +.+    -...++.++++..++.++-
T Consensus       241 ~g~D~vid~~g~-~~~----~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          241 CKPEVTIECTGA-EAS----IQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             SCCSEEEECSCC-HHH----HHHHHHHSCTTCEEEECSC
T ss_pred             CCCCEEEECCCC-hHH----HHHHHHHhcCCCEEEEEec
Confidence            258999998873 221    2456788899999988864

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.81  E-value=0.011  Score=53.89  Aligned_cols=93  Identities=16%  Similarity=0.116  Sum_probs=60.3

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcccccc-CCHHHHhhcCCEEE
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDEVLREADVIS  241 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ell~~aDiV~  241 (328)
                      .|+++.|+|. |.+|..+++.+ +.+|++|++.+++....  +.       +++-|......... .++.+.+...|+|+
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a-~~~Ga~Vi~~~~~~~~~--~~-------~~~~ga~~~~~~~~~~~~~~~~~~~d~vi  194 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVA-RAMGLRVLAAASRPEKL--AL-------PLALGAEEAATYAEVPERAKAWGGLDLVL  194 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEESSGGGS--HH-------HHHTTCSEEEEGGGHHHHHHHTTSEEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH--HH-------HHhcCCCEEEECCcchhHHHHhcCceEEE
Confidence            4789999998 99999999985 78999999999876432  11       11122211111111 12333346789999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      . +.. +     .-+..++.|+++..++.++-
T Consensus       195 d-~g~-~-----~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          195 E-VRG-K-----EVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             E-CSC-T-----THHHHHTTEEEEEEEEEC--
T ss_pred             E-CCH-H-----HHHHHHHhhccCCEEEEEeC
Confidence            8 763 2     23567888888888888763

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.80  E-value=0.029  Score=55.08  Aligned_cols=98  Identities=16%  Similarity=0.289  Sum_probs=69.3

Q ss_pred             cccCCCEEEEEecC----------HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH
Q 020301          161 NLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (328)
Q Consensus       161 ~~l~g~tvgIiG~G----------~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (328)
                      ..+.|++|+|+|+-          .=...+++.| ...|++|.+|||....        +         ..  .....++
T Consensus       349 ~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L-~~~g~~V~~~DP~~~~--------~---------~~--~~~~~~~  408 (478)
T 3g79_A          349 KKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLC-LKAGASVMVHDPYVVN--------Y---------PG--VEISDNL  408 (478)
T ss_dssp             CCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHH-HHHTCEEEEECSSCCC--------B---------TT--BCEESCH
T ss_pred             cCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHH-HHCCCEEEEECCCccc--------c---------cC--cceecCH
Confidence            36899999999974          2357888887 6889999999997641        0         00  1123688


Q ss_pred             HHHhhcCCEEEEcCCCChhhhccccHH-HHhcCC-CCcEEEEcCCCcccCHHHH
Q 020301          231 DEVLREADVISLHPVLDKTTYHLINKE-RLATMK-KEAILVNCSRGPVIDEVAL  282 (328)
Q Consensus       231 ~ell~~aDiV~l~~plt~~t~~li~~~-~~~~mk-~ga~lIN~aRG~~vde~aL  282 (328)
                      ++.++.||.|+++.+ -++.+. ++-+ ..+.|+ ++.+++++ |+ +.|.+.+
T Consensus       409 ~~~~~~ad~vvi~t~-~~~f~~-~d~~~~~~~~~~~~~~i~D~-rn-~~~~~~~  458 (478)
T 3g79_A          409 EEVVRNADAIVVLAG-HSAYSS-LKADWAKKVSAKANPVIIDG-RN-VIEPDEF  458 (478)
T ss_dssp             HHHHTTCSEEEECSC-CHHHHS-CCHHHHHHHHCCSSCEEEES-SS-CSCHHHH
T ss_pred             HHHHhcCCEEEEecC-CHHHHh-hhHHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence            999999999999987 345444 4544 445677 48899996 54 4676555

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.79  E-value=0.015  Score=58.60  Aligned_cols=103  Identities=17%  Similarity=0.249  Sum_probs=65.2

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch------------------hHHHHHHhhhhhhhhcC-CCC
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKAN-GEQ  220 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~-~~~  220 (328)
                      ..|.+++|.|||.|.+|..+|+.|+ ..|. ++..+|...-                  .+.+...+.    +.+- ...
T Consensus       322 ekL~~arVLIVGaGGLGs~vA~~La-~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~----L~~iNP~V  396 (615)
T 4gsl_A          322 DIIKNTKVLLLGAGTLGCYVSRALI-AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAAS----LKRIFPLM  396 (615)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHH----HHHHCTTC
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHH----HHhhCCCc
Confidence            3689999999999999999999985 6676 7888887531                  011111110    1100 000


Q ss_pred             Ccccc-------------------ccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          221 PVTWK-------------------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       221 ~~~~~-------------------~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .....                   ...+++++++++|+|+.|+- +.+++.+++......   +..+|+.+
T Consensus       397 ~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tD-n~~tR~~ln~~c~~~---~~PlI~aa  463 (615)
T 4gsl_A          397 DATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA  463 (615)
T ss_dssp             EEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCS-SGGGTHHHHHHHHHT---TCEEEEEE
T ss_pred             EEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCC-CHHHHHHHHHHHHHc---CCeEEEEE
Confidence            00000                   01235678999999998875 778999998877654   44566654

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=95.78  E-value=0.0095  Score=56.14  Aligned_cols=102  Identities=14%  Similarity=0.182  Sum_probs=52.5

Q ss_pred             CEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhc---CCCCCccccccCCHHHHhh-cCCEE
Q 020301          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA---NGEQPVTWKRASSMDEVLR-EADVI  240 (328)
Q Consensus       166 ~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~ell~-~aDiV  240 (328)
                      .+|||+| .|.||+.+++.|...=+++|.+..++.....+.+.+.|+.....   .+...... ...+++++++ .+|+|
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~DvV   87 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVV-IPTDPKHEEFEDVDIV   87 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBC-EESCTTSGGGTTCCEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEE-EeCCHHHHhcCCCCEE
Confidence            4799999 99999999999743335788766422111101111111100000   00000111 1124556656 89999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      ++|+|.. .+.. +-...   .+.|+.+|+.+-
T Consensus        88 ~~atp~~-~~~~-~a~~~---~~aG~~VId~s~  115 (354)
T 1ys4_A           88 FSALPSD-LAKK-FEPEF---AKEGKLIFSNAS  115 (354)
T ss_dssp             EECCCHH-HHHH-HHHHH---HHTTCEEEECCS
T ss_pred             EECCCch-HHHH-HHHHH---HHCCCEEEECCc
Confidence            9999832 2222 11222   246788888763

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.77  E-value=0.016  Score=53.82  Aligned_cols=94  Identities=16%  Similarity=0.130  Sum_probs=60.4

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-----cC
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  237 (328)
                      .|++|.|+|.|.+|...++.+ +.+|+ +|++.+++....  ++       +++- ....-.....++.+.+.     ..
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~~Vi~~~~~~~~~--~~-------~~~l-a~~v~~~~~~~~~~~~~~~~~~g~  232 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVV-RASGAGPILVSDPNPYRL--AF-------ARPY-ADRLVNPLEEDLLEVVRRVTGSGV  232 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHH-HHTTCCSEEEECSCHHHH--GG-------GTTT-CSEEECTTTSCHHHHHHHHHSSCE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH--HH-------HHHh-HHhccCcCccCHHHHHHHhcCCCC
Confidence            788999999999999999985 79999 999999875432  11       1111 10000011124444443     58


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      |+|+-++... ++    -+..++.|+++..++.++.
T Consensus       233 D~vid~~g~~-~~----~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          233 EVLLEFSGNE-AA----IHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             EEEEECSCCH-HH----HHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCCCH-HH----HHHHHHHHhcCCEEEEEec
Confidence            9999888732 21    2456677788878877753

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.74  E-value=0.021  Score=53.20  Aligned_cols=95  Identities=13%  Similarity=0.123  Sum_probs=61.6

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccc-cccCCHHHHhh-----c
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVLR-----E  236 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~-----~  236 (328)
                      .|+++.|+|. |.||+.+++.+ +..|++|++.+++....  +....+       |...... ....++.+.+.     .
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a-~~~Ga~V~~~~~~~~~~--~~~~~~-------g~~~~~d~~~~~~~~~~~~~~~~~~  238 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYA-KAMGYRVLGIDGGEGKE--ELFRSI-------GGEVFIDFTKEKDIVGAVLKATDGG  238 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECSTTHH--HHHHHT-------TCCEEEETTTCSCHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCcEEEEcCCHHHH--HHHHHc-------CCceEEecCccHhHHHHHHHHhCCC
Confidence            4789999999 89999999985 78999999999876432  111111       2211111 11234555444     4


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .|+|+.+....+     .-+..++.|+++..+|+++.
T Consensus       239 ~D~vi~~~g~~~-----~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          239 AHGVINVSVSEA-----AIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             EEEEEECSSCHH-----HHHHHTTSEEEEEEEEECCC
T ss_pred             CCEEEECCCcHH-----HHHHHHHHHhcCCEEEEEeC
Confidence            799998876322     12456677888888888764

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=95.74  E-value=0.03  Score=54.84  Aligned_cols=70  Identities=10%  Similarity=0.158  Sum_probs=49.0

Q ss_pred             CCEEEEEec----CHHHHHHHHHHHhcC--CcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--
Q 020301          165 GQTVGVIGA----GRIGSAYARMMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--  235 (328)
Q Consensus       165 g~tvgIiG~----G~IG~~vA~~l~~~f--g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--  235 (328)
                      -.++||||+    |.||+..++.+. ..  +++|. ++|+++.. .+++.+.|       +...  ...+.+++++++  
T Consensus        39 ~irvgiIG~g~~GG~~g~~h~~~l~-~~~~~~~lvav~d~~~~~-a~~~a~~~-------g~~~--~~~~~d~~ell~~~  107 (479)
T 2nvw_A           39 PIRVGFVGLTSGKSWVAKTHFLAIQ-QLSSQFQIVALYNPTLKS-SLQTIEQL-------QLKH--ATGFDSLESFAQYK  107 (479)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHH-HTTTTEEEEEEECSCHHH-HHHHHHHT-------TCTT--CEEESCHHHHHHCT
T ss_pred             cCEEEEEcccCCCCHHHHHHHHHHH-hcCCCeEEEEEEeCCHHH-HHHHHHHc-------CCCc--ceeeCCHHHHhcCC
Confidence            358999999    999999999874 54  78865 77887643 22222222       2211  123579999996  


Q ss_pred             cCCEEEEcCC
Q 020301          236 EADVISLHPV  245 (328)
Q Consensus       236 ~aDiV~l~~p  245 (328)
                      ..|+|++++|
T Consensus       108 ~vD~V~I~tp  117 (479)
T 2nvw_A          108 DIDMIVVSVK  117 (479)
T ss_dssp             TCSEEEECSC
T ss_pred             CCCEEEEcCC
Confidence            6899999999

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=95.73  E-value=0.022  Score=52.20  Aligned_cols=98  Identities=12%  Similarity=0.064  Sum_probs=57.4

Q ss_pred             CEEEEEe-cCHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .+|+|+| +|+||+.+++.+.+.=++++.+. |+......-...      .+-.|..+.+.....++++++..+|+|+-+
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~------gel~G~~~~gv~v~~dl~~ll~~aDVvIDF   95 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDA------SILIGSDFLGVRITDDPESAFSNTEGILDF   95 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBG------GGGTTCSCCSCBCBSCHHHHTTSCSEEEEC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccch------HHhhccCcCCceeeCCHHHHhcCCCEEEEc
Confidence            4799999 99999999998755568886644 775422100000      001122223334457999999999999877


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      .+  |+...   +..-..++.|.-+|-.+.|
T Consensus        96 T~--p~a~~---~~~~~~l~~Gv~vViGTTG  121 (288)
T 3ijp_A           96 SQ--PQASV---LYANYAAQKSLIHIIGTTG  121 (288)
T ss_dssp             SC--HHHHH---HHHHHHHHHTCEEEECCCC
T ss_pred             CC--HHHHH---HHHHHHHHcCCCEEEECCC
Confidence            64  33211   1111223445556655556

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=95.72  E-value=0.018  Score=57.91  Aligned_cols=104  Identities=15%  Similarity=0.229  Sum_probs=65.4

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch------------------hHHHHHHhhhhhhhhcCCCCC
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQP  221 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~  221 (328)
                      ..|.+++|.|||.|.+|..+|+.|+ ..|. ++..+|...-                  .+.+...+...+.   .....
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~La-~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~i---NP~v~  398 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRALI-AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRI---FPLMD  398 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-TTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHH---CTTCE
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhH---CCCcE
Confidence            5799999999999999999999985 6776 7888876421                  1111111111000   00000


Q ss_pred             cccc-------------------ccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          222 VTWK-------------------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       222 ~~~~-------------------~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      ....                   ...+++++++++|+|+.|+. +.+++.+++......   +..+|+.+
T Consensus       399 v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatD-n~~tR~lin~~c~~~---~~plI~aa  464 (598)
T 3vh1_A          399 ATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA  464 (598)
T ss_dssp             EEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCS-BGGGTHHHHHHHHHT---TCEEEEEE
T ss_pred             EEEEeccccccCcccccccccccCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHhc---CCCEEEEE
Confidence            0000                   01235678999999999886 678899888877654   33566654

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.71  E-value=0.01  Score=51.18  Aligned_cols=102  Identities=11%  Similarity=0.228  Sum_probs=61.9

Q ss_pred             CCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCc--cccccCCHHHHhhcCCEEE
Q 020301          165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVIS  241 (328)
Q Consensus       165 g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV~  241 (328)
                      .|++.|.| .|.||+.+++.|++.-|.+|++.+|++....++...      ...+....  ......+++++++.+|+|+
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~D~~d~~~~~~~~~~~d~vv   78 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEII------DHERVTVIEGSFQNPGXLEQAVTNAEVVF   78 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHH------TSTTEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhcc------CCCceEEEECCCCCHHHHHHHHcCCCEEE
Confidence            36799999 599999999998426799999999986511111100      00011000  0111235667889999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCC-C-cEEEEcCCCcc
Q 020301          242 LHPVLDKTTYHLINKERLATMKK-E-AILVNCSRGPV  276 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~-g-a~lIN~aRG~~  276 (328)
                      .+..... ..   ....+..|+. + ..|||+|....
T Consensus        79 ~~ag~~n-~~---~~~~~~~~~~~~~~~iv~iSs~~~  111 (221)
T 3r6d_A           79 VGAMESG-SD---MASIVKALSRXNIRRVIGVSMAGL  111 (221)
T ss_dssp             ESCCCCH-HH---HHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             EcCCCCC-hh---HHHHHHHHHhcCCCeEEEEeecee
Confidence            9887431 11   4555555642 2 36888876443

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=95.70  E-value=0.016  Score=55.97  Aligned_cols=70  Identities=11%  Similarity=0.121  Sum_probs=48.9

Q ss_pred             CEEEEEec----CHHHHHHHHHHHhcC--CcEE-EEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--c
Q 020301          166 QTVGVIGA----GRIGSAYARMMVEGF--KMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--E  236 (328)
Q Consensus       166 ~tvgIiG~----G~IG~~vA~~l~~~f--g~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~  236 (328)
                      .++||||+    |.||+..++.+. ..  +++| .++|+++.. .++..+.|       +...  ...+.+++++++  .
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l~-~~~~~~~lvav~d~~~~~-~~~~a~~~-------g~~~--~~~~~~~~~ll~~~~   89 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAIL-QLSSQFQITALYSPKIET-SIATIQRL-------KLSN--ATAFPTLESFASSST   89 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHHH-HTTTTEEEEEEECSSHHH-HHHHHHHT-------TCTT--CEEESSHHHHHHCSS
T ss_pred             CEEEEEcccCCCChHHHHHHHHHH-hcCCCeEEEEEEeCCHHH-HHHHHHHc-------CCCc--ceeeCCHHHHhcCCC
Confidence            47999999    999999999874 55  7886 477887643 22222222       2211  123579999997  5


Q ss_pred             CCEEEEcCCC
Q 020301          237 ADVISLHPVL  246 (328)
Q Consensus       237 aDiV~l~~pl  246 (328)
                      .|+|++++|.
T Consensus        90 vD~V~i~tp~   99 (438)
T 3btv_A           90 IDMIVIAIQV   99 (438)
T ss_dssp             CSEEEECSCH
T ss_pred             CCEEEEeCCc
Confidence            8999999993

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=95.69  E-value=0.028  Score=52.00  Aligned_cols=106  Identities=17%  Similarity=0.253  Sum_probs=71.0

Q ss_pred             ccCCCEEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       162 ~l~g~tvgIiG~---G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      .+.|.+|+++|=   |++.++++..+ ..||++|.+..|..-...++..    +.++..|.   ......++++.+++||
T Consensus       152 ~l~gl~va~vGD~~~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~----~~~~~~g~---~~~~~~d~~eav~~aD  223 (308)
T 1ml4_A          152 RIDGLKIGLLGDLKYGRTVHSLAEAL-TFYDVELYLISPELLRMPRHIV----EELREKGM---KVVETTTLEDVIGKLD  223 (308)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHG-GGSCEEEEEECCGGGCCCHHHH----HHHHHTTC---CEEEESCTHHHHTTCS
T ss_pred             CCCCeEEEEeCCCCcCchHHHHHHHH-HHCCCEEEEECCccccCCHHHH----HHHHHcCC---eEEEEcCHHHHhcCCC
Confidence            478999999998   48999999986 6899999999885321111111    11222231   1223468999999999


Q ss_pred             EEEEcCCCC------hhh-----hccccHHHHhcCCCCcEEEEcC-CCc
Q 020301          239 VISLHPVLD------KTT-----YHLINKERLATMKKEAILVNCS-RGP  275 (328)
Q Consensus       239 iV~l~~plt------~~t-----~~li~~~~~~~mk~ga~lIN~a-RG~  275 (328)
                      +|..-.=-.      ++.     ..-+|.+.++.+||+++|.-+. ||.
T Consensus       224 vvyt~~~q~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lPrg~  272 (308)
T 1ml4_A          224 VLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPLPRVD  272 (308)
T ss_dssp             EEEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCSCCSS
T ss_pred             EEEECCccccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCCCCCC
Confidence            997644211      111     2346888999999999888773 443

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=95.69  E-value=1.4  Score=41.29  Aligned_cols=107  Identities=12%  Similarity=0.152  Sum_probs=67.0

Q ss_pred             cccCCCEEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCch---hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc
Q 020301          161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (328)
Q Consensus       161 ~~l~g~tvgIiG~G-~IG~~vA~~l~~~fg~~V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (328)
                      ..+.|.+|++||=+ ++..+++..+ ..||++|.+..|..-   +...+....+   +. ............+++|.+++
T Consensus       184 ~~l~glkva~vGD~~nva~Sl~~~l-~~lG~~v~~~~P~~~~~~~~i~~~~~~~---a~-~~~~g~~~~~~~d~~eav~~  258 (353)
T 3sds_A          184 LGLEGLKIAWVGDANNVLFDLAIAA-TKMGVNVAVATPRGYEIPSHIVELIQKA---RE-GVQSPGNLTQTTVPEVAVKD  258 (353)
T ss_dssp             CSCTTCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTCCCCHHHHHHHHHH---HT-TCSSCCCEEEESCHHHHTTT
T ss_pred             cccCCCEEEEECCCchHHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHh---hh-hccCCCeEEEECCHHHHhcC
Confidence            45899999999976 4677777775 579999999987532   1111111111   00 00001122344699999999


Q ss_pred             CCEEEEcC--CCChh----------hhccccHHHHhc--CCCCcEEEEcC
Q 020301          237 ADVISLHP--VLDKT----------TYHLINKERLAT--MKKEAILVNCS  272 (328)
Q Consensus       237 aDiV~l~~--plt~~----------t~~li~~~~~~~--mk~ga~lIN~a  272 (328)
                      ||+|..-.  +...+          ...-++.+.++.  +|++++|.-+.
T Consensus       259 aDVvytd~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL  308 (353)
T 3sds_A          259 ADVIVTDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL  308 (353)
T ss_dssp             CSEEEECCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS
T ss_pred             CCEEEeCCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCC
Confidence            99997642  22211          113579999998  89999998774

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=95.68  E-value=0.025  Score=53.15  Aligned_cols=95  Identities=15%  Similarity=0.190  Sum_probs=53.2

Q ss_pred             CEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      .+|||+| .|.||+.+.+.|...=.+++.+........ .++.+.|+.+   .+....   ...++++ +..+|+|++|+
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g-~~~~~~~~~~---~g~~~~---~~~~~~~-~~~vDvV~~a~   76 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAG-EPVHFVHPNL---RGRTNL---KFVPPEK-LEPADILVLAL   76 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTT-SBGGGTCGGG---TTTCCC---BCBCGGG-CCCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhC-chhHHhCchh---cCcccc---cccchhH-hcCCCEEEEcC
Confidence            4799999 899999999997533356877665432211 1111111100   010111   1223444 57899999999


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      |.... +.+. ...   ++.|+.+|+.+-
T Consensus        77 g~~~s-~~~a-~~~---~~aG~~VId~Sa  100 (345)
T 2ozp_A           77 PHGVF-AREF-DRY---SALAPVLVDLSA  100 (345)
T ss_dssp             CTTHH-HHTH-HHH---HTTCSEEEECSS
T ss_pred             CcHHH-HHHH-HHH---HHCCCEEEEcCc
Confidence            95432 2221 222   356888888864

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=95.68  E-value=0.025  Score=52.80  Aligned_cols=116  Identities=16%  Similarity=0.248  Sum_probs=68.5

Q ss_pred             EEEEEecCHHHHHHHHHHHhc--------CCcEEEEE-cCCchhH----HHHHHhhhhhhhhcCCCCCccccccCCHHHH
Q 020301          167 TVGVIGAGRIGSAYARMMVEG--------FKMNLIYY-DLYQATR----LEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~--------fg~~V~~~-d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (328)
                      ++||||+|.||+.+++.+.+.        .+.+|.+. |++....    ..+.....    ...+    ......+++++
T Consensus         4 rvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~----~~~~----~~~~~~d~~~l   75 (327)
T 3do5_A            4 KIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMK----RETG----MLRDDAKAIEV   75 (327)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHH----HHHS----SCSBCCCHHHH
T ss_pred             EEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhh----ccCc----cccCCCCHHHH
Confidence            799999999999999987543        67887654 6553211    01110000    0000    00002389999


Q ss_pred             hhc--CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCc
Q 020301          234 LRE--ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM  291 (328)
Q Consensus       234 l~~--aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~v-de~aL~~aL~~g~i  291 (328)
                      +..  .|+|+.|.|....+.. .-+-....++.|.-+|...-+.+. +-+.|.++.++...
T Consensus        76 l~~~~iDvVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~  135 (327)
T 3do5_A           76 VRSADYDVLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGV  135 (327)
T ss_dssp             HHHSCCSEEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTC
T ss_pred             hcCCCCCEEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCC
Confidence            864  8999999995433222 223345667788888877555553 55677777776554

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.65  E-value=0.019  Score=53.48  Aligned_cols=92  Identities=24%  Similarity=0.264  Sum_probs=60.6

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh------c
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR------E  236 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------~  236 (328)
                      .|++|.|+|. |.||...++.+ +.+|++|++.+++....  +....+       |........ .++.+.+.      .
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~--~~~~~~-------ga~~v~~~~-~~~~~~v~~~~~~~g  227 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIA-KGMGAKVIAVVNRTAAT--EFVKSV-------GADIVLPLE-EGWAKAVREATGGAG  227 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSGGGH--HHHHHH-------TCSEEEESS-TTHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHH--HHHHhc-------CCcEEecCc-hhHHHHHHHHhCCCC
Confidence            5889999998 99999999985 79999999999876542  122222       222111111 33333222      4


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .|+|+.++...      .-...++.++++..++.++
T Consensus       228 ~Dvvid~~g~~------~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          228 VDMVVDPIGGP------AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             EEEEEESCC--------CHHHHHHTEEEEEEEEEC-
T ss_pred             ceEEEECCchh------HHHHHHHhhcCCCEEEEEE
Confidence            89999887731      2356778888888888876

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=95.63  E-value=0.045  Score=51.56  Aligned_cols=31  Identities=29%  Similarity=0.480  Sum_probs=25.1

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEc
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d  196 (328)
                      .+|||+|+|+||+.+.|.|...=+++|.+.+
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivain   48 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAIN   48 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEec
Confidence            3899999999999999987433368877765

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=95.63  E-value=0.028  Score=54.31  Aligned_cols=74  Identities=16%  Similarity=0.222  Sum_probs=47.9

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccC----CHHHHhh--cCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS----SMDEVLR--EAD  238 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~ell~--~aD  238 (328)
                      .+|||||+|.||+..++.+.+.-+++|. ++|+++... ++..+.+    ...+...  ...+.    +++++++  ..|
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~-~~~a~~~----~~~g~~~--~~~~~~~~~~~~~ll~~~~vD   93 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMV-GRAQEIL----KKNGKKP--AKVFGNGNDDYKNMLKDKNID   93 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHH-HHHHHHH----HHTTCCC--CEEECSSTTTHHHHTTCTTCC
T ss_pred             ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHH-HHHHHHH----HhcCCCC--CceeccCCCCHHHHhcCCCCC
Confidence            4799999999999999987432378864 778876432 2221111    0112110  11235    8999998  589


Q ss_pred             EEEEcCCC
Q 020301          239 VISLHPVL  246 (328)
Q Consensus       239 iV~l~~pl  246 (328)
                      +|++++|.
T Consensus        94 ~V~i~tp~  101 (444)
T 2ixa_A           94 AVFVSSPW  101 (444)
T ss_dssp             EEEECCCG
T ss_pred             EEEEcCCc
Confidence            99999993

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=95.62  E-value=0.026  Score=52.83  Aligned_cols=30  Identities=30%  Similarity=0.565  Sum_probs=24.5

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEc
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d  196 (328)
                      +|||+|+|+||+.++|.+...=+++|.+..
T Consensus         5 kVgI~G~GrIGr~l~R~l~~~p~vevvaI~   34 (337)
T 3e5r_O            5 KIGINGFGRIGRLVARVALQSEDVELVAVN   34 (337)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             EEEEECcCHHHHHHHHHHhCCCCeEEEEEE
Confidence            799999999999999987433378877664

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=95.62  E-value=0.018  Score=54.18  Aligned_cols=31  Identities=26%  Similarity=0.216  Sum_probs=24.4

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEc
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d  196 (328)
                      .+|||+|+|+||+.+++.+...=+++|.+..
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~   33 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVT   33 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence            3799999999999999987433368877653

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.60  E-value=0.021  Score=53.57  Aligned_cols=94  Identities=14%  Similarity=0.014  Sum_probs=61.1

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH----hh--cC
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LR--EA  237 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~--~a  237 (328)
                      .|++|.|+|.|.||...++.+ +.+|++|++.+++....  ++...+       |....-.....++.+.    ..  ..
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla-~~~Ga~Vi~~~~~~~~~--~~~~~l-------Ga~~vi~~~~~~~~~~v~~~~~g~g~  258 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIA-KATGAEVIVTSSSREKL--DRAFAL-------GADHGINRLEEDWVERVYALTGDRGA  258 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHH-HHTTCEEEEEESCHHHH--HHHHHH-------TCSEEEETTTSCHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEecCchhH--HHHHHc-------CCCEEEcCCcccHHHHHHHHhCCCCc
Confidence            588999999999999999985 89999999999876432  112222       2211111111233332    22  58


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      |+|+-++. . +    .-...++.++++..++.++-
T Consensus       259 D~vid~~g-~-~----~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          259 DHILEIAG-G-A----GLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             EEEEEETT-S-S----CHHHHHHHEEEEEEEEEECC
T ss_pred             eEEEECCC-h-H----HHHHHHHHhhcCCEEEEEec
Confidence            99998876 2 2    23556778888888887753

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=95.60  E-value=0.031  Score=52.20  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=26.1

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~  198 (328)
                      +|||+|+|+||+.+.|.+...-.++|.+.+-.
T Consensus         3 kVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~   34 (330)
T 1gad_O            3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   34 (330)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             EEEEECcCHHHHHHHHHHHcCCCeEEEEEcCC
Confidence            79999999999999998754457888776543

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=95.59  E-value=0.022  Score=52.71  Aligned_cols=107  Identities=22%  Similarity=0.228  Sum_probs=61.0

Q ss_pred             CEEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      .+|+|||.|.+|..++..++. +..-++..+|..... .+.....+..... -. ...... ..+ .+.++.||+|+++.
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k-~~g~a~dl~~~~~-~~-~~~~v~-~~~-~~a~~~aD~Vii~a   75 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKL-AQAHAEDILHATP-FA-HPVWVW-AGS-YGDLEGARAVVLAA   75 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHH-HHHHHHHHHTTGG-GS-CCCEEE-ECC-GGGGTTEEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhH-HHHHHHHHHHhHh-hc-CCeEEE-ECC-HHHhCCCCEEEECC
Confidence            479999999999999988753 233589999997532 2222111111100 00 111111 133 56789999999998


Q ss_pred             CCChhhhcc-------ccH-------HHHhcCCCCcEEEEcCCCcccCHH
Q 020301          245 VLDKTTYHL-------INK-------ERLATMKKEAILVNCSRGPVIDEV  280 (328)
Q Consensus       245 plt~~t~~l-------i~~-------~~~~~mk~ga~lIN~aRG~~vde~  280 (328)
                      +... ..++       .|.       +.+....|+++++|++  ..+|.-
T Consensus        76 g~~~-~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~~~  122 (310)
T 2xxj_A           76 GVAQ-RPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT--NPVDVM  122 (310)
T ss_dssp             CCCC-CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS--SSHHHH
T ss_pred             CCCC-CCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec--CchHHH
Confidence            6432 2221       111       1222336899999984  444443

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.58  E-value=0.032  Score=52.56  Aligned_cols=94  Identities=18%  Similarity=0.138  Sum_probs=61.2

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc--cCCHHHHhh-----
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR-----  235 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~-----  235 (328)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.+++....  ++.       ++-|....-...  ..++.+.+.     
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a-~~~Ga~~Vi~~~~~~~~~--~~a-------~~lGa~~vi~~~~~~~~~~~~i~~~~~g  262 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGA-KTAGASRIIGIDIDSKKY--ETA-------KKFGVNEFVNPKDHDKPIQEVIVDLTDG  262 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HHHTCSCEEEECSCTTHH--HHH-------HTTTCCEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHH--HHH-------HHcCCcEEEccccCchhHHHHHHHhcCC
Confidence            588999999999999999984 78999 899999876542  122       222322111111  234444433     


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCC-cEEEEcC
Q 020301          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCS  272 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~g-a~lIN~a  272 (328)
                      ..|+|+-++.. +++    -...++.+++| ..++.++
T Consensus       263 g~D~vid~~g~-~~~----~~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          263 GVDYSFECIGN-VSV----MRAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHTBCTTTCEEEECS
T ss_pred             CCCEEEECCCC-HHH----HHHHHHHhhccCCEEEEEc
Confidence            38999988873 222    24567788885 7777765

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.55  E-value=0.03  Score=51.66  Aligned_cols=94  Identities=18%  Similarity=0.117  Sum_probs=62.0

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcccccc-CCHHHHhh-----c
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDEVLR-----E  236 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ell~-----~  236 (328)
                      .|+++.|.|. |.||+.+++.+ +..|++|++.+++.... +. ...+       +......... .++.+.+.     .
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~-~~~G~~V~~~~~~~~~~-~~-~~~~-------g~~~~~d~~~~~~~~~~~~~~~~~~  214 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIA-KLKGCKVVGAAGSDEKI-AY-LKQI-------GFDAAFNYKTVNSLEEALKKASPDG  214 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHH-HHTTCEEEEEESSHHHH-HH-HHHT-------TCSEEEETTSCSCHHHHHHHHCTTC
T ss_pred             CCCEEEEecCCCcHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH-HHhc-------CCcEEEecCCHHHHHHHHHHHhCCC
Confidence            5889999998 99999999986 78999999999875432 11 1211       2111111111 34444443     4


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .|+++.+...  .+    -...++.++++..++.++-
T Consensus       215 ~d~vi~~~g~--~~----~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          215 YDCYFDNVGG--EF----LNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             EEEEEESSCH--HH----HHHHHTTEEEEEEEEECCC
T ss_pred             CeEEEECCCh--HH----HHHHHHHHhcCCEEEEEec
Confidence            7999988762  21    3567788899999988863

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=95.53  E-value=0.054  Score=51.90  Aligned_cols=73  Identities=15%  Similarity=0.164  Sum_probs=48.4

Q ss_pred             CCEEEEEecCH---HHHHHHHHHHhcCCcEEE--EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc---
Q 020301          165 GQTVGVIGAGR---IGSAYARMMVEGFKMNLI--YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---  236 (328)
Q Consensus       165 g~tvgIiG~G~---IG~~vA~~l~~~fg~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---  236 (328)
                      -.++||||+|.   ||+..+..+...-++++.  ++|+++... ++..+.|       +...  ...+.+++++++.   
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a-~~~a~~~-------g~~~--~~~~~~~~~ll~~~~~  106 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKA-EASGREL-------GLDP--SRVYSDFKEMAIREAK  106 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHH-HHHHHHH-------TCCG--GGBCSCHHHHHHHHHH
T ss_pred             cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHH-HHHHHHc-------CCCc--ccccCCHHHHHhcccc
Confidence            34899999999   999988875333347876  568876532 3333333       2211  1235799999987   


Q ss_pred             ----CCEEEEcCCCC
Q 020301          237 ----ADVISLHPVLD  247 (328)
Q Consensus       237 ----aDiV~l~~plt  247 (328)
                          .|+|+++.|..
T Consensus       107 ~~~~vD~V~I~tp~~  121 (417)
T 3v5n_A          107 LKNGIEAVAIVTPNH  121 (417)
T ss_dssp             CTTCCSEEEECSCTT
T ss_pred             cCCCCcEEEECCCcH
Confidence                89999999954

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=95.51  E-value=0.024  Score=52.31  Aligned_cols=67  Identities=10%  Similarity=0.052  Sum_probs=46.6

Q ss_pred             CEEEEEec-CHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh---------
Q 020301          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---------  234 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---------  234 (328)
                      .++||||+ |.||+..++.+ +..+.++. ++|+++...  ...+.|       +    ....+.++++++         
T Consensus         4 irvgiIG~gG~i~~~h~~~l-~~~~~~lvav~d~~~~~~--~~~~~~-------~----~~~~~~~~~~ll~~~~~l~~~   69 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAI-KEVGGVLVASLDPATNVG--LVDSFF-------P----EAEFFTEPEAFEAYLEDLRDR   69 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHH-HHTTCEEEEEECSSCCCG--GGGGTC-------T----TCEEESCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCChHHHHHHHHHH-HhCCCEEEEEEcCCHHHH--HHHhhC-------C----CCceeCCHHHHHHHhhhhccc
Confidence            57999999 78999999987 46688755 678876431  110000       0    123457889988         


Q ss_pred             -hcCCEEEEcCCC
Q 020301          235 -READVISLHPVL  246 (328)
Q Consensus       235 -~~aDiV~l~~pl  246 (328)
                       .+.|+|+++.|.
T Consensus        70 ~~~vD~V~I~tP~   82 (312)
T 3o9z_A           70 GEGVDYLSIASPN   82 (312)
T ss_dssp             TCCCSEEEECSCG
T ss_pred             CCCCcEEEECCCc
Confidence             578999999993

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.50  E-value=0.015  Score=53.68  Aligned_cols=95  Identities=19%  Similarity=0.159  Sum_probs=61.8

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-----cC
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  237 (328)
                      .|+++.|+|. |.||..+++.+ +.+|++|++.+++.... + ..      .+.-|..........++.+.+.     ..
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~-~~------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  219 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIA-RLKGCRVVGIAGGAEKC-R-FL------VEELGFDGAIDYKNEDLAAGLKRECPKGI  219 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-H-HH------HHTTCCSEEEETTTSCHHHHHHHHCTTCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-H-HH------HHHcCCCEEEECCCHHHHHHHHHhcCCCc
Confidence            5889999999 99999999985 78999999999876432 1 11      0112221111111123433332     48


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      |+|+.+...  +    .-...++.++++..+|.++.
T Consensus       220 d~vi~~~g~--~----~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          220 DVFFDNVGG--E----ILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             EEEEESSCH--H----HHHHHHTTEEEEEEEEECCC
T ss_pred             eEEEECCCc--c----hHHHHHHHHhhCCEEEEEee
Confidence            999888762  2    23567788888888888764

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.49  E-value=0.017  Score=54.30  Aligned_cols=95  Identities=9%  Similarity=0.059  Sum_probs=60.8

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-----cC
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  237 (328)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.+++....  ++...+       |....-.....++.+.+.     ..
T Consensus       190 ~g~~VlV~GaG~vG~~a~qla-k~~Ga~~Vi~~~~~~~~~--~~a~~l-------Ga~~vi~~~~~~~~~~~~~~~~gg~  259 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAA-KVCGASIIIAVDIVESRL--ELAKQL-------GATHVINSKTQDPVAAIKEITDGGV  259 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHH-HHHTCSEEEEEESCHHHH--HHHHHH-------TCSEEEETTTSCHHHHHHHHTTSCE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHHHH--HHHHHc-------CCCEEecCCccCHHHHHHHhcCCCC
Confidence            478999999999999999984 78999 799999876432  122222       221111111123333332     47


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      |+|+-++.. +++    -...++.++++..++.++-
T Consensus       260 D~vid~~g~-~~~----~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          260 NFALESTGS-PEI----LKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             EEEEECSCC-HHH----HHHHHHTEEEEEEEEECCC
T ss_pred             cEEEECCCC-HHH----HHHHHHHHhcCCEEEEeCC
Confidence            999988763 221    2456778888888888764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=95.48  E-value=0.017  Score=53.91  Aligned_cols=94  Identities=15%  Similarity=0.161  Sum_probs=62.3

Q ss_pred             CCCEEEEE-ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-----cC
Q 020301          164 KGQTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (328)
Q Consensus       164 ~g~tvgIi-G~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  237 (328)
                      .|++|.|+ |.|.||..+++.+ +..|++|++.+++....  +....+       |..........++.+.+.     ..
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~--~~~~~l-------Ga~~~~~~~~~~~~~~~~~~~~~g~  236 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLA-RAFGAEVYATAGSTGKC--EACERL-------GAKRGINYRSEDFAAVIKAETGQGV  236 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH--HHHHHH-------TCSEEEETTTSCHHHHHHHHHSSCE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHH--HHHHhc-------CCCEEEeCCchHHHHHHHHHhCCCc
Confidence            58899999 6899999999985 79999999999876542  111122       221111111224444333     48


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      |+++.++.. +     .-...++.++++..++.++.
T Consensus       237 Dvvid~~g~-~-----~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          237 DIILDMIGA-A-----YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             EEEEESCCG-G-----GHHHHHHTEEEEEEEEECCC
T ss_pred             eEEEECCCH-H-----HHHHHHHHhccCCEEEEEEe
Confidence            999988873 1     23567788888888888863

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.48  E-value=0.025  Score=54.94  Aligned_cols=120  Identities=18%  Similarity=0.098  Sum_probs=71.8

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc-CCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-aDiV  240 (328)
                      ++.|+++.|||+|.+|.++|+.| +..|.+|.++|.......+ .    .+.++..|..   +..-...++++.. +|+|
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l-~~~G~~V~~~D~~~~~~~~-~----~~~L~~~gi~---~~~g~~~~~~~~~~~d~v   76 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLL-AKLGAIVTVNDGKPFDENP-T----AQSLLEEGIK---VVCGSHPLELLDEDFCYM   76 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHH-HHTTCEEEEEESSCGGGCH-H----HHHHHHTTCE---EEESCCCGGGGGSCEEEE
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEeCCcccCCh-H----HHHHHhCCCE---EEECCChHHhhcCCCCEE
Confidence            57899999999999999999987 6899999999986521100 0    0112233321   1111223456676 8999


Q ss_pred             EEc--CCC-Chhh-----h--ccccHH-HHhc-CCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301          241 SLH--PVL-DKTT-----Y--HLINKE-RLAT-MKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (328)
Q Consensus       241 ~l~--~pl-t~~t-----~--~li~~~-~~~~-mk~ga~lIN~aRG~~vde~aL~~aL~~g~  290 (328)
                      ++.  +|. +|+-     +  .++.+- .+.. ++...+-|--+.|..--..-|...|+...
T Consensus        77 v~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g  138 (451)
T 3lk7_A           77 IKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGG  138 (451)
T ss_dssp             EECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred             EECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            876  332 1221     1  144443 3333 34334444446788777777777787643

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=95.46  E-value=0.042  Score=50.82  Aligned_cols=111  Identities=18%  Similarity=0.287  Sum_probs=73.1

Q ss_pred             ccCCCEEEEEec---CHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301          162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (328)
Q Consensus       162 ~l~g~tvgIiG~---G~IG~~vA~~l~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (328)
                      .+.|.+|+++|=   |++.++++..+ ..| |++|.+..|..-...+...+    .++..|.   ......+++|.+++|
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~----~~~~~g~---~~~~~~d~~eav~~a  222 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYILD----MLDEKGI---AWSLHSSIEEVMAEV  222 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHH-HTSSSCEEEEECCGGGCCCHHHHH----HHHHTTC---CEEECSCGGGTTTTC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHH-HhCCCCEEEEECCcccccCHHHHH----HHHHcCC---eEEEEcCHHHHhcCC
Confidence            478999999998   59999999997 589 99999998853211111111    1222231   122346899999999


Q ss_pred             CEEEEcCCCCh----hh------hccccHHHHhcCCCCcEEEEcC-CCcccCHH
Q 020301          238 DVISLHPVLDK----TT------YHLINKERLATMKKEAILVNCS-RGPVIDEV  280 (328)
Q Consensus       238 DiV~l~~plt~----~t------~~li~~~~~~~mk~ga~lIN~a-RG~~vde~  280 (328)
                      |+|..-.=-.+    +.      ..-++++.++.+||++++.-+. ||.=|+.+
T Consensus       223 Dvvyt~~~q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lPrg~EI~~e  276 (310)
T 3csu_A          223 DILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATD  276 (310)
T ss_dssp             SEEEECC-----------------CCBCGGGGTTCCTTCEEECCSCCSSSBCHH
T ss_pred             CEEEECCccccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCCCCCCeecHH
Confidence            99976533211    11      2346899999999999998874 65545443

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.45  E-value=0.0087  Score=52.35  Aligned_cols=102  Identities=11%  Similarity=0.115  Sum_probs=62.5

Q ss_pred             cCCCEEEEEe-cCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCc--cccccCCHHHHhhcCC
Q 020301          163 LKGQTVGVIG-AGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREAD  238 (328)
Q Consensus       163 l~g~tvgIiG-~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aD  238 (328)
                      ...+++.|.| .|.||+.+++.| ..-| .+|++++|+.....+         ....+....  ......+++++++.+|
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L-~~~G~~~V~~~~R~~~~~~~---------~~~~~~~~~~~Dl~d~~~~~~~~~~~D   90 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQL-ADKQTIKQTLFARQPAKIHK---------PYPTNSQIIMGDVLNHAALKQAMQGQD   90 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHH-TTCTTEEEEEEESSGGGSCS---------SCCTTEEEEECCTTCHHHHHHHHTTCS
T ss_pred             CcccEEEEEeCCcHHHHHHHHHH-HhCCCceEEEEEcChhhhcc---------cccCCcEEEEecCCCHHHHHHHhcCCC
Confidence            4568999999 699999999998 5778 899999998653110         000010000  0111234667899999


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCC--CcEEEEcCCCcc
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKK--EAILVNCSRGPV  276 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~--ga~lIN~aRG~~  276 (328)
                      +|+.+.......  ...+..+..|+.  ...||++|....
T Consensus        91 ~vv~~a~~~~~~--~~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A           91 IVYANLTGEDLD--IQANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             EEEEECCSTTHH--HHHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             EEEEcCCCCchh--HHHHHHHHHHHHcCCCEEEEEeccee
Confidence            999887643221  122345555532  247888887544

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.42  E-value=0.13  Score=50.23  Aligned_cols=110  Identities=12%  Similarity=0.087  Sum_probs=69.8

Q ss_pred             cccCCCEEEEEecC----------HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhh---hhcCCCCCcccccc
Q 020301          161 NLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF---LKANGEQPVTWKRA  227 (328)
Q Consensus       161 ~~l~g~tvgIiG~G----------~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  227 (328)
                      ..+.|++|+|+|+-          +=...+++.| ...|++|.+|||.......+   .|+..   ..... .  .....
T Consensus       324 ~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L-~~~g~~v~~~DP~~~~~~~~---~~~~~~~~~~~~~-~--~~~~~  396 (478)
T 2y0c_A          324 EDLTGRTFAIWGLAFKPNTDDMREAPSRELIAEL-LSRGARIAAYDPVAQEEARR---VIALDLADHPSWL-E--RLSFV  396 (478)
T ss_dssp             SCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHH-HHTTCEEEEECTTTHHHHHH---HHHHHTTTCHHHH-T--TEEEC
T ss_pred             ccCCCCEEEEEecccCCCCCccccChHHHHHHHH-HHCCCEEEEECCCccHHHHH---hhccccccccccc-c--ceeec
Confidence            36889999999984          3456788987 68999999999986432111   12100   00000 0  01224


Q ss_pred             CCHHHHhhcCCEEEEcCCCChhhhccccHHHH-hcCCCCcEEEEcCCCcccCHHHH
Q 020301          228 SSMDEVLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNCSRGPVIDEVAL  282 (328)
Q Consensus       228 ~~l~ell~~aDiV~l~~plt~~t~~li~~~~~-~~mk~ga~lIN~aRG~~vde~aL  282 (328)
                      .++++.++.||+|+++..- ++.+. ++-+.+ +.|+ +.+++++ |+ +.|.+.+
T Consensus       397 ~~~~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~-~~~i~D~-r~-~~~~~~~  447 (478)
T 2y0c_A          397 DDEAQAARDADALVIVTEW-KIFKS-PDFVALGRLWK-TPVIFDG-RN-LYEPETM  447 (478)
T ss_dssp             SSHHHHTTTCSEEEECSCC-GGGGS-CCHHHHHTTCS-SCEEEES-SC-CSCHHHH
T ss_pred             CCHHHHHhCCCEEEEecCC-hHhhc-cCHHHHHhhcC-CCEEEEC-CC-CCCHHHH
Confidence            5788999999999999873 44444 454444 4565 5789988 44 5666543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.41  E-value=0.018  Score=53.63  Aligned_cols=94  Identities=16%  Similarity=0.149  Sum_probs=57.5

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh------c
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR------E  236 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------~  236 (328)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.+++....  ++...+       |....-.....++.+.+.      .
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~~~~~--~~~~~l-------Ga~~vi~~~~~~~~~~v~~~t~g~g  235 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGA-NHLGAGRIFAVGSRKHCC--DIALEY-------GATDIINYKNGDIVEQILKATDGKG  235 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HTTTCSSEEEECCCHHHH--HHHHHH-------TCCEEECGGGSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHHH--HHHHHh-------CCceEEcCCCcCHHHHHHHHcCCCC
Confidence            478999999999999999984 89999 899999876432  222222       222111111123333222      4


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .|+|+-+....+.     -...++.++++..++.++
T Consensus       236 ~D~v~d~~g~~~~-----~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          236 VDKVVIAGGDVHT-----FAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             EEEEEECSSCTTH-----HHHHHHHEEEEEEEEECC
T ss_pred             CCEEEECCCChHH-----HHHHHHHHhcCCEEEEec
Confidence            7999888764221     244556666666666554

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=95.40  E-value=0.032  Score=52.26  Aligned_cols=30  Identities=23%  Similarity=0.443  Sum_probs=23.6

Q ss_pred             EEEEEecCHHHHHHHHHHHhc--CCcEEEEEc
Q 020301          167 TVGVIGAGRIGSAYARMMVEG--FKMNLIYYD  196 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~--fg~~V~~~d  196 (328)
                      +|||+|+|+||+.+.|.|...  =.++|.+.+
T Consensus         3 kVgInG~G~IGr~llR~l~~~~~p~~eivaIn   34 (337)
T 1rm4_O            3 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVIN   34 (337)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSCSEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence            699999999999999987432  257776554

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.40  E-value=0.054  Score=50.57  Aligned_cols=112  Identities=13%  Similarity=0.146  Sum_probs=63.9

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      ....++|+|||.|.||..+|..++ .-|.  ++..+|..... .+...........- . .........+.+ .++.||+
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~-~~~~~~el~L~Di~~~~-~~g~a~DL~~~~~~-~-~~~~i~~~~d~~-~~~~aDi   90 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISIL-MKDLADELALVDVIEDK-LKGEMMDLQHGSLF-L-KTPKIVSSKDYS-VTANSKL   90 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHH-HTTCCSEEEEECSCHHH-HHHHHHHHHHTGGG-C-SCCEEEECSSGG-GGTTEEE
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHH-hCCCCceEEEEeCChHH-HHHHHHhhhhhhhc-c-CCCeEEEcCCHH-HhCCCCE
Confidence            456789999999999999998865 3355  89999997542 22211111100000 0 011111223555 4899999


Q ss_pred             EEEcCCCC--h-hhh-cccc---------HHHHhcCCCCcEEEEcCCCcccCHH
Q 020301          240 ISLHPVLD--K-TTY-HLIN---------KERLATMKKEAILVNCSRGPVIDEV  280 (328)
Q Consensus       240 V~l~~plt--~-~t~-~li~---------~~~~~~mk~ga~lIN~aRG~~vde~  280 (328)
                      |+++....  | +|| .++.         .+.+....|++++++++-  .+|.-
T Consensus        91 Vvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN--Pvdi~  142 (331)
T 4aj2_A           91 VIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN--PVDIL  142 (331)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS--SHHHH
T ss_pred             EEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC--hHHHH
Confidence            99886422  1 233 2221         123344578999999974  55543

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=95.37  E-value=0.02  Score=52.90  Aligned_cols=106  Identities=17%  Similarity=0.270  Sum_probs=59.3

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      +|+|||.|.+|..+|..++. -|. +|..+|...... +.....+.......+ .........+. +.++.||+|+++.+
T Consensus         1 KI~IiGaG~vG~~~a~~l~~-~~l~el~L~Di~~~~~-~g~~~dl~~~~~~~~-~~~~i~~t~d~-~a~~~aD~Vi~~ag   76 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMM-RGYDDLLLIARTPGKP-QGEALDLAHAAAELG-VDIRISGSNSY-EDMRGSDIVLVTAG   76 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-HTCSCEEEECSSTTHH-HHHHHHHHHHHHHHT-CCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CEEEECcCHHHHHHHHHHHh-CCCCEEEEEcCChhhH-HHHHHHHHHhhhhcC-CCeEEEECCCH-HHhCCCCEEEEeCC
Confidence            58999999999999988653 254 699999986432 221111111000001 01111111455 57899999999976


Q ss_pred             CChhhhcc-----------ccHH---HHhcCCCCcEEEEcCCCcccCH
Q 020301          246 LDKTTYHL-----------INKE---RLATMKKEAILVNCSRGPVIDE  279 (328)
Q Consensus       246 lt~~t~~l-----------i~~~---~~~~mk~ga~lIN~aRG~~vde  279 (328)
                      ... ..++           +-.+   .+....|++++|+++-  .+|.
T Consensus        77 ~~~-k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN--Pv~~  121 (308)
T 2d4a_B           77 IGR-KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN--PVDA  121 (308)
T ss_dssp             CCC-CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS--SHHH
T ss_pred             CCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC--chHH
Confidence            432 1221           0112   2233358999999854  4443

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=95.35  E-value=0.61  Score=42.57  Aligned_cols=69  Identities=17%  Similarity=0.106  Sum_probs=50.6

Q ss_pred             ccCCCEEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       162 ~l~g~tvgIiG~---G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      .+.|.+|+++|=   +++.++.+..+ ..||++|.+..|..-.. .. .       ..     .+.....+++|.+++||
T Consensus       143 ~l~gl~va~vGDl~~~rva~Sl~~~~-~~~g~~v~~~~P~~~~p-~~-~-------~~-----~g~~~~~d~~eav~~aD  207 (291)
T 3d6n_B          143 EVKDLRVLYVGDIKHSRVFRSGAPLL-NMFGAKIGVCGPKTLIP-RD-V-------EV-----FKVDVFDDVDKGIDWAD  207 (291)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHH-HHTTCEEEEESCGGGSC-TT-G-------GG-----GCEEEESSHHHHHHHCS
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHH-HHCCCEEEEECCchhCC-ch-H-------HH-----CCCEEEcCHHHHhCCCC
Confidence            478999999996   89999999997 68999999998743210 00 0       01     11233579999999999


Q ss_pred             EEEEcCCC
Q 020301          239 VISLHPVL  246 (328)
Q Consensus       239 iV~l~~pl  246 (328)
                      +|.. +-.
T Consensus       208 vvy~-~~~  214 (291)
T 3d6n_B          208 VVIW-LRL  214 (291)
T ss_dssp             EEEE-CCC
T ss_pred             EEEE-eCc
Confidence            9988 443

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=95.32  E-value=0.085  Score=48.78  Aligned_cols=109  Identities=20%  Similarity=0.224  Sum_probs=65.4

Q ss_pred             CEEEEEe-cCHHHHHHHHHHHh--cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcccccc--CCHHHHhhcCCEE
Q 020301          166 QTVGVIG-AGRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA--SSMDEVLREADVI  240 (328)
Q Consensus       166 ~tvgIiG-~G~IG~~vA~~l~~--~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~ell~~aDiV  240 (328)
                      .+|+|+| .|.+|+.+|..|+.  .+.-++..+|....  .+.....+    .+ .........+  .+..+.++.||+|
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~--~~G~a~Dl----~~-~~~~~~v~~~~~~~~~~~~~~aDiv   73 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV--TPGVAVDL----SH-IPTAVKIKGFSGEDATPALEGADVV   73 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTT--HHHHHHHH----HT-SCSSEEEEEECSSCCHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCC--chhHHHHh----hC-CCCCceEEEecCCCcHHHhCCCCEE
Confidence            3799999 99999999998754  36679999998762  11211111    11 1111111111  2567789999999


Q ss_pred             EEcCCCC--h-hhh-ccc--cH-------HHHhcCCCCcEEEEcCCCcccCHHHHH
Q 020301          241 SLHPVLD--K-TTY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDEVALV  283 (328)
Q Consensus       241 ~l~~plt--~-~t~-~li--~~-------~~~~~mk~ga~lIN~aRG~~vde~aL~  283 (328)
                      +++.+..  | +|| .++  |.       +.+....|++++++++  ..+|.-..+
T Consensus        74 ii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t~~  127 (312)
T 3hhp_A           74 LISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTVAI  127 (312)
T ss_dssp             EECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHHHH
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHHHH
Confidence            9987532  1 122 122  11       1223345899999995  667766555

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=95.30  E-value=0.11  Score=43.55  Aligned_cols=73  Identities=12%  Similarity=0.076  Sum_probs=48.1

Q ss_pred             CCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcc--ccccCCHHHHhhcCCEEE
Q 020301          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLREADVIS  241 (328)
Q Consensus       165 g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~aDiV~  241 (328)
                      ++++.|.|. |.||+.+++.|+ .-|.+|++.+|+......         ....+.....  .....++.++++.+|+|+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~-~~g~~V~~~~r~~~~~~~---------~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi   72 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAV-QAGYEVTVLVRDSSRLPS---------EGPRPAHVVVGDVLQAADVDKTVAGQDAVI   72 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCGGGSCS---------SSCCCSEEEESCTTSHHHHHHHHTTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHH-HCCCeEEEEEeChhhccc---------ccCCceEEEEecCCCHHHHHHHHcCCCEEE
Confidence            478999998 999999999984 669999999997643110         0000110000  111234667888999999


Q ss_pred             EcCCCC
Q 020301          242 LHPVLD  247 (328)
Q Consensus       242 l~~plt  247 (328)
                      .+....
T Consensus        73 ~~a~~~   78 (206)
T 1hdo_A           73 VLLGTR   78 (206)
T ss_dssp             ECCCCT
T ss_pred             ECccCC
Confidence            887654

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=95.29  E-value=0.022  Score=53.40  Aligned_cols=35  Identities=29%  Similarity=0.370  Sum_probs=29.2

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQAT  201 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~-~d~~~~~  201 (328)
                      -++||.|||+||+.++|++ ..+|++|++ +||..+.
T Consensus         8 ~kvgInGFGRIGrlv~R~~-~~~~veivainDp~~d~   43 (346)
T 3h9e_O            8 LTVGINGFGRIGRLVLRAC-MEKGVKVVAVNDPFIDP   43 (346)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEEECTTCCH
T ss_pred             eEEEEECCChHHHHHHHHH-HhCCCEEEEEeCCCCCh
Confidence            4799999999999999985 678999887 6775443

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=95.28  E-value=0.041  Score=51.54  Aligned_cols=31  Identities=26%  Similarity=0.434  Sum_probs=24.9

Q ss_pred             EEEEEecCHHHHHHHHHHHh---cCCcEEEEEcC
Q 020301          167 TVGVIGAGRIGSAYARMMVE---GFKMNLIYYDL  197 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~---~fg~~V~~~d~  197 (328)
                      +|||+|+|+||+.+.|.|..   .=+++|.+.+.
T Consensus         4 kVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~   37 (339)
T 2x5j_O            4 RVAINGFGRIGRNVVRALYESGRRAEITVVAINE   37 (339)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeC
Confidence            79999999999999998743   23688876654

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=95.28  E-value=0.016  Score=53.37  Aligned_cols=92  Identities=13%  Similarity=0.134  Sum_probs=62.2

Q ss_pred             CCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC-HHHHhhcCCEEE
Q 020301          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVIS  241 (328)
Q Consensus       164 ~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~aDiV~  241 (328)
                      .|.+|.|+| .|.+|...++.+ +.+|++|++.++..+   .++...+       |....-.....+ +.+.+...|+|+
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a-~~~Ga~vi~~~~~~~---~~~~~~l-------Ga~~~i~~~~~~~~~~~~~g~D~v~  220 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTASKRN---HAFLKAL-------GAEQCINYHEEDFLLAISTPVDAVI  220 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEECHHH---HHHHHHH-------TCSEEEETTTSCHHHHCCSCEEEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEeccch---HHHHHHc-------CCCEEEeCCCcchhhhhccCCCEEE
Confidence            578999997 999999999985 899999998874322   2222222       322111112234 666677899999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      -++.. +.    + ...++.++++..++.++
T Consensus       221 d~~g~-~~----~-~~~~~~l~~~G~iv~~g  245 (321)
T 3tqh_A          221 DLVGG-DV----G-IQSIDCLKETGCIVSVP  245 (321)
T ss_dssp             ESSCH-HH----H-HHHGGGEEEEEEEEECC
T ss_pred             ECCCc-HH----H-HHHHHhccCCCEEEEeC
Confidence            88762 11    2 56778888888888874

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.26  E-value=0.068  Score=48.80  Aligned_cols=109  Identities=14%  Similarity=0.108  Sum_probs=72.9

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      +.|+++.++|........++.| ...|.+|..+.-....        |         ...+.....++.+.++++|+|++
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L-~~~g~~v~~~~~~~~~--------~---------~~~g~~~~~~~~~~~~~~d~ii~   66 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKL-TEQQADIYLVGFDQLD--------H---------GFTGAVKCNIDEIPFQQIDSIIL   66 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHH-HHTTCEEEEESCTTSS--------C---------CCTTEEECCGGGSCGGGCSEEEC
T ss_pred             ccCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeccccc--------c---------ccccceeccchHHHHhcCCEEEe
Confidence            6788999999999999999987 5789999876321110        0         01112223456778899999987


Q ss_pred             cCCCCh----------hhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEE
Q 020301          243 HPVLDK----------TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (328)
Q Consensus       243 ~~plt~----------~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ga  294 (328)
                      ..|...          .+...++++.++.++++.+++    ++ +|..++.+++.+..+.-.
T Consensus        67 ~~~~~~~~~~i~s~~a~~~~~~~~~~l~~~~~l~~i~----~g-~~~~d~~~~~~~~gi~v~  123 (300)
T 2rir_A           67 PVSATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIF----SG-ISNAYLENIAAQAKRKLV  123 (300)
T ss_dssp             CSSCEETTTEECBSSCSSCEECCHHHHHTSCTTCEEE----ES-SCCHHHHHHHHHTTCCEE
T ss_pred             ccccccCCcccccccccCCccchHHHHhhcCCCCEEE----Ee-cCCHHHHHHHHHCCCEEE
Confidence            555322          234447899999999998887    23 366775566665555543

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=95.26  E-value=0.024  Score=51.70  Aligned_cols=62  Identities=29%  Similarity=0.359  Sum_probs=43.2

Q ss_pred             CEEEEEecCHHHHHHHHHHHh---cCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCE
Q 020301          166 QTVGVIGAGRIGSAYARMMVE---GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~---~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  239 (328)
                      .++||||+|.||+..++.+.+   .-++++. ++|++...             +..+     . .+.+++++++  ..|+
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a-------------~~~g-----~-~~~~~~ell~~~~vD~   68 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG-------------SLDE-----V-RQISLEDALRSQEIDV   68 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC-------------EETT-----E-EBCCHHHHHHCSSEEE
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHH-------------HHcC-----C-CCCCHHHHhcCCCCCE
Confidence            479999999999999988632   2367766 56664311             0011     1 1368999997  6799


Q ss_pred             EEEcCCC
Q 020301          240 ISLHPVL  246 (328)
Q Consensus       240 V~l~~pl  246 (328)
                      |+++.|.
T Consensus        69 V~i~tp~   75 (294)
T 1lc0_A           69 AYICSES   75 (294)
T ss_dssp             EEECSCG
T ss_pred             EEEeCCc
Confidence            9999993

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=95.24  E-value=0.03  Score=51.69  Aligned_cols=67  Identities=18%  Similarity=0.202  Sum_probs=46.3

Q ss_pred             CEEEEEec-CHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh---------
Q 020301          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---------  234 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---------  234 (328)
                      .++||||+ |.||+..++.+ +..+.++. ++|+++...  ...+.|       +    ....+.++++++         
T Consensus         4 irvgiIG~gG~i~~~h~~~l-~~~~~~lvav~d~~~~~~--~~~~~~-------~----~~~~~~~~~~ll~~~~~l~~~   69 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAI-KDTGNCLVSAYDINDSVG--IIDSIS-------P----QSEFFTEFEFFLDHASNLKRD   69 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHH-HHTTCEEEEEECSSCCCG--GGGGTC-------T----TCEEESSHHHHHHHHHHHTTS
T ss_pred             eEEEEECCCcHHHHHHHHHH-HhCCCEEEEEEcCCHHHH--HHHhhC-------C----CCcEECCHHHHHHhhhhhhhc
Confidence            57999999 79999999987 45688755 668775431  110000       0    123457888887         


Q ss_pred             --hcCCEEEEcCCC
Q 020301          235 --READVISLHPVL  246 (328)
Q Consensus       235 --~~aDiV~l~~pl  246 (328)
                        ...|+|+++.|.
T Consensus        70 ~~~~vD~V~I~tP~   83 (318)
T 3oa2_A           70 SATALDYVSICSPN   83 (318)
T ss_dssp             TTTSCCEEEECSCG
T ss_pred             cCCCCcEEEECCCc
Confidence              568999999994

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=95.23  E-value=0.018  Score=50.38  Aligned_cols=70  Identities=21%  Similarity=0.316  Sum_probs=45.5

Q ss_pred             CEEEEEecCHHHHHHHHHHH-hcCCcEEE-EEcCCch-hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc--CCEE
Q 020301          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~-~~fg~~V~-~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV  240 (328)
                      ++++|+|.|++|+.+++.+. ...|+++. ++|.++. ..        +. ..-.|   .......++++++++  .|++
T Consensus        85 ~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~ki--------G~-~~i~G---vpV~~~~dL~~~v~~~~Id~v  152 (212)
T 3keo_A           85 TNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLV--------GK-TTEDG---IPVYGISTINDHLIDSDIETA  152 (212)
T ss_dssp             EEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTT--------TC-BCTTC---CBEEEGGGHHHHC-CCSCCEE
T ss_pred             CEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhcc--------Cc-eeECC---eEEeCHHHHHHHHHHcCCCEE
Confidence            47999999999999998621 35688876 4576654 21        00 00012   222234688888875  8999


Q ss_pred             EEcCCCC
Q 020301          241 SLHPVLD  247 (328)
Q Consensus       241 ~l~~plt  247 (328)
                      ++++|..
T Consensus       153 IIAvPs~  159 (212)
T 3keo_A          153 ILTVPST  159 (212)
T ss_dssp             EECSCGG
T ss_pred             EEecCch
Confidence            9999953

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.20  E-value=0.029  Score=52.46  Aligned_cols=93  Identities=16%  Similarity=0.209  Sum_probs=60.5

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC---HHHHhhcCCEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREADVI  240 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~aDiV  240 (328)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.+++.... +....       +-|....  ....+   +.++....|+|
T Consensus       180 ~g~~VlV~GaG~vG~~a~qla-k~~Ga~Vi~~~~~~~~~-~~~~~-------~lGa~~v--i~~~~~~~~~~~~~g~D~v  248 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIA-KAMGHHVTVISSSNKKR-EEALQ-------DLGADDY--VIGSDQAKMSELADSLDYV  248 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEESSTTHH-HHHHT-------TSCCSCE--EETTCHHHHHHSTTTEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeCChHHH-HHHHH-------HcCCcee--eccccHHHHHHhcCCCCEE
Confidence            588999999999999999985 78999999999876432 11100       2222211  11122   22333468999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      +-++....     .-...++.++++..++.++
T Consensus       249 id~~g~~~-----~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          249 IDTVPVHH-----ALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             EECCCSCC-----CSHHHHTTEEEEEEEEECS
T ss_pred             EECCCChH-----HHHHHHHHhccCCEEEEeC
Confidence            98887321     1245667788888888775

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=95.17  E-value=0.044  Score=50.72  Aligned_cols=69  Identities=13%  Similarity=0.190  Sum_probs=44.5

Q ss_pred             CEEEEEecCHHHHHHHHHHHh-cCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-----cCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD  238 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~-~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~aD  238 (328)
                      .++||||+|.||+.+++.+.+ .-++++. ++|+++.....+..+.|       +..    ....+.+++++     ..|
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~-------g~~----~~~~~~e~ll~~~~~~~iD   73 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRM-------GVT----TTYAGVEGLIKLPEFADID   73 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHT-------TCC----EESSHHHHHHHSGGGGGEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHc-------CCC----cccCCHHHHHhccCCCCCc
Confidence            479999999999999998744 3467654 56877543112221222       211    01246777764     479


Q ss_pred             EEEEcCC
Q 020301          239 VISLHPV  245 (328)
Q Consensus       239 iV~l~~p  245 (328)
                      +|+.+.|
T Consensus        74 vV~~atp   80 (312)
T 1nvm_B           74 FVFDATS   80 (312)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9999999

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.16  E-value=0.044  Score=50.76  Aligned_cols=114  Identities=15%  Similarity=0.056  Sum_probs=69.3

Q ss_pred             CCEEEEEecCHHHHH-HHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-hcCCEEEE
Q 020301          165 GQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISL  242 (328)
Q Consensus       165 g~tvgIiG~G~IG~~-vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l  242 (328)
                      .+++.|||.|.+|.+ +|+.| +..|.+|.++|....+...+.       +++.|..   ...-.+.+++. .++|+|+.
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L-~~~G~~V~~~D~~~~~~~~~~-------L~~~gi~---v~~g~~~~~l~~~~~d~vV~   72 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIA-KEAGFEVSGCDAKMYPPMSTQ-------LEALGID---VYEGFDAAQLDEFKADVYVI   72 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHH-HHTTCEEEEEESSCCTTHHHH-------HHHTTCE---EEESCCGGGGGSCCCSEEEE
T ss_pred             CcEEEEEEECHHHHHHHHHHH-HhCCCEEEEEcCCCCcHHHHH-------HHhCCCE---EECCCCHHHcCCCCCCEEEE
Confidence            478999999999996 89886 689999999998754321111       2222321   11112345555 57999987


Q ss_pred             c--CC-CChhhh-------ccccHH-HHhc--CCC-CcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          243 H--PV-LDKTTY-------HLINKE-RLAT--MKK-EAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       243 ~--~p-lt~~t~-------~li~~~-~~~~--mk~-ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      .  +| .+|+-.       .++++- .|..  ++. ..+-|--+.|..--..-|...|+..
T Consensus        73 Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~  133 (326)
T 3eag_A           73 GNVAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA  133 (326)
T ss_dssp             CTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred             CCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            5  33 223221       234433 3343  332 2455555779888778788888764

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=95.14  E-value=0.071  Score=49.26  Aligned_cols=104  Identities=20%  Similarity=0.294  Sum_probs=62.2

Q ss_pred             EEEEEec-CHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc---cCCHHHHhhcCCEE
Q 020301          167 TVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADVI  240 (328)
Q Consensus       167 tvgIiG~-G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~aDiV  240 (328)
                      +|+|+|. |.+|+.++..|+ .-|  -+|..+|+....   .....+    . +...+.....   ..++++.++.||+|
T Consensus         2 KI~IiGa~G~VG~~la~~L~-~~~~~~ev~L~Di~~~~---~~a~dL----~-~~~~~~~l~~~~~t~d~~~a~~~aDvV   72 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLK-NSPLVSRLTLYDIAHTP---GVAADL----S-HIETRATVKGYLGPEQLPDCLKGCDVV   72 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHH-TCTTCSEEEEEESSSHH---HHHHHH----T-TSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred             EEEEECCCChHHHHHHHHHH-hCCCCcEEEEEeCCccH---HHHHHH----h-ccCcCceEEEecCCCCHHHHhCCCCEE
Confidence            7999998 999999999875 445  689999997621   111111    1 1111211111   13688889999999


Q ss_pred             EEcCCCChh---hh-cc--cc----H---HHHhcCCCCcEEEEcCCCcccCHHH
Q 020301          241 SLHPVLDKT---TY-HL--IN----K---ERLATMKKEAILVNCSRGPVIDEVA  281 (328)
Q Consensus       241 ~l~~plt~~---t~-~l--i~----~---~~~~~mk~ga~lIN~aRG~~vde~a  281 (328)
                      +++......   ++ .+  .|    .   +.+....|++++|++  ...+|.-.
T Consensus        73 vi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~--sNPv~~~~  124 (314)
T 1mld_A           73 VIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII--SNPVNSTI  124 (314)
T ss_dssp             EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC--SSCHHHHH
T ss_pred             EECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE--CCCcchhH
Confidence            999753221   11 11  01    1   122233588999998  45666654

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.13  E-value=0.036  Score=50.90  Aligned_cols=38  Identities=24%  Similarity=0.521  Sum_probs=32.2

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCc
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~  199 (328)
                      ..|.+++|.|||.|.+|..+|+.|+ ..|. ++..+|...
T Consensus        32 ~kL~~~~VlVvGaGGlGs~va~~La-~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGGVGSVTAEMLT-RCGIGKLLLFDYDK   70 (292)
T ss_dssp             CGGGGCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCCB
T ss_pred             HHHhCCeEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCc
Confidence            4689999999999999999999985 5564 788888764

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=95.13  E-value=0.053  Score=48.64  Aligned_cols=108  Identities=16%  Similarity=0.181  Sum_probs=63.9

Q ss_pred             cccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccc-cccC---CHHHHhh
Q 020301          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRAS---SMDEVLR  235 (328)
Q Consensus       161 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~l~ell~  235 (328)
                      ..+.||++.|.|. |-||+++|+.|+ .-|++|++.+++.....++..+..    +..+...... ....   +++++++
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la-~~G~~V~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~Dv~d~~~v~~~~~  101 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLA-LEGAAVALTYVNAAERAQAVVSEI----EQAGGRAVAIRADNRDAEAIEQAIR  101 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHH----HHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHHHH----HhcCCcEEEEECCCCCHHHHHHHHH
Confidence            3689999999996 679999999985 779999998766544333322211    1111111000 0112   2334444


Q ss_pred             -------cCCEEEEcCCCChh------h----hc----------cccHHHHhcCCCCcEEEEcCC
Q 020301          236 -------EADVISLHPVLDKT------T----YH----------LINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       236 -------~aDiV~l~~plt~~------t----~~----------li~~~~~~~mk~ga~lIN~aR  273 (328)
                             ..|+++.+.-....      +    ..          .+-+..+..|+++..+||++.
T Consensus       102 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          102 ETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence                   68999887643211      0    11          123456677888888999865

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.13  E-value=0.1  Score=44.47  Aligned_cols=97  Identities=11%  Similarity=0.020  Sum_probs=58.7

Q ss_pred             EEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccc-cccCCHHHHhhcCCEEEEcC
Q 020301          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVLREADVISLHP  244 (328)
Q Consensus       167 tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiV~l~~  244 (328)
                      ++.|.|. |.||+.+++.|+ .-|.+|++.+|+.....+ .        ...+...... ....+. +.+..+|+|+.+.
T Consensus         2 kilVtGatG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~~-~--------~~~~~~~~~~D~~d~~~-~~~~~~d~vi~~a   70 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEAR-RRGHEVLAVVRDPQKAAD-R--------LGATVATLVKEPLVLTE-ADLDSVDAVVDAL   70 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHH-H--------TCTTSEEEECCGGGCCH-HHHTTCSEEEECC
T ss_pred             EEEEEcCCCHHHHHHHHHHH-HCCCEEEEEEeccccccc-c--------cCCCceEEecccccccH-hhcccCCEEEECC
Confidence            6889997 999999999984 669999999998654211 0        0111111100 011112 6789999999888


Q ss_pred             CCC--h---hhhccccHHHHhcCC-CCcEEEEcCCC
Q 020301          245 VLD--K---TTYHLINKERLATMK-KEAILVNCSRG  274 (328)
Q Consensus       245 plt--~---~t~~li~~~~~~~mk-~ga~lIN~aRG  274 (328)
                      ...  +   ++.-......++.|+ .|..+|++|..
T Consensus        71 g~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           71 SVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             CCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             ccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            653  1   111112245666664 34678888653

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=95.12  E-value=0.12  Score=49.87  Aligned_cols=120  Identities=18%  Similarity=0.227  Sum_probs=70.3

Q ss_pred             ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCC---------chhHHHHHHhhhhh--hhh--cCCCCCcccc
Q 020301          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLY---------QATRLEKFVTAYGQ--FLK--ANGEQPVTWK  225 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~-~d~~---------~~~~~~~~~~~~~~--~~~--~~~~~~~~~~  225 (328)
                      |.++.|+++.|.|+|++|+.+|+.| ..+|++|++ .|.+         ....+.++.+..+.  +..  ..+.    ..
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L-~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~----~~  279 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWL-EKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDN----AE  279 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSC----CC
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccC----ce
Confidence            3478999999999999999999997 689999984 3431         11111111111100  000  0000    01


Q ss_pred             ccCCHHHHh-hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       226 ~~~~l~ell-~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      ...+.++++ ..||+++-|.     +.+.|+.+...+++ =.+++--|-+++- .+|- +.|.+..+.
T Consensus       280 ~~~~~~~~~~~~~Dil~P~A-----~~~~I~~~~a~~l~-ak~V~EgAN~p~t-~~a~-~~l~~~Gi~  339 (421)
T 1v9l_A          280 FVKNPDAIFKLDVDIFVPAA-----IENVIRGDNAGLVK-ARLVVEGANGPTT-PEAE-RILYERGVV  339 (421)
T ss_dssp             CCSSTTGGGGCCCSEEEECS-----CSSCBCTTTTTTCC-CSEEECCSSSCBC-HHHH-HHHHTTTCE
T ss_pred             EeCCchhhhcCCccEEEecC-----cCCccchhhHHHcC-ceEEEecCCCcCC-HHHH-HHHHHCCCE
Confidence            110234444 3799998875     35667777777775 4578888888864 4444 455555443

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=95.10  E-value=0.11  Score=48.76  Aligned_cols=103  Identities=17%  Similarity=0.236  Sum_probs=58.2

Q ss_pred             CCEEEEEe-cCHHHHHHHHHHHhcCC------cEEEEEcC-Cch-hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh
Q 020301          165 GQTVGVIG-AGRIGSAYARMMVEGFK------MNLIYYDL-YQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (328)
Q Consensus       165 g~tvgIiG-~G~IG~~vA~~l~~~fg------~~V~~~d~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (328)
                      ..+|+|+| .|.+|+.+.+.|. ..+      .++..... +.. +...   +.|.. ..  +........ .+. +.++
T Consensus         9 m~kVaIvGATG~vG~~llr~L~-~~~~~~~~~~ei~~l~s~~~agk~~~---~~~~~-l~--~~~~~~~~~-~~~-~~~~   79 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLL-GHPAYADGRLRIGALTAATSAGSTLG---EHHPH-LT--PLAHRVVEP-TEA-AVLG   79 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHH-TCHHHHTTSEEEEEEEESSCTTSBGG---GTCTT-CG--GGTTCBCEE-CCH-HHHT
T ss_pred             CCEEEEECCCCHHHHHHHHHHH-cCCCCCCccEEEEEEECCCcCCCchh---hhccc-cc--ccceeeecc-CCH-HHhc
Confidence            36899999 9999999999974 444      57666642 211 1111   00100 00  000111111 233 3466


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 020301          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL  282 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL  282 (328)
                      .+|+|++|+|...      ..+....++.|+.+|+.|--.-.+..+.
T Consensus        80 ~~DvVf~alg~~~------s~~~~~~~~~G~~vIDlSa~~R~~~~~~  120 (352)
T 2nqt_A           80 GHDAVFLALPHGH------SAVLAQQLSPETLIIDCGADFRLTDAAV  120 (352)
T ss_dssp             TCSEEEECCTTSC------CHHHHHHSCTTSEEEECSSTTTCSCHHH
T ss_pred             CCCEEEECCCCcc------hHHHHHHHhCCCEEEEECCCccCCcchh
Confidence            8999999999542      3444444566899999875544444343

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=95.09  E-value=0.32  Score=46.74  Aligned_cols=113  Identities=20%  Similarity=0.197  Sum_probs=71.1

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCC---------chhHHHHHHhhhhhhhhcCCCCCccccccCCH
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (328)
                      .++.|+++.|.|+|++|+.+|+.| ...|++|+ +.|.+         ....+.+..+..+      .....   .. +-
T Consensus       214 ~~l~gk~vaVqG~GnVG~~~a~~L-~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g------~v~~~---~~-~~  282 (419)
T 3aoe_E          214 LDLRGARVVVQGLGQVGAAVALHA-ERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATG------SLPRL---DL-AP  282 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHS------SCSCC---CB-CT
T ss_pred             CCccCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhC------Cccee---ec-cc
Confidence            468999999999999999999997 58899999 54552         1122222211111      01100   01 11


Q ss_pred             HHHh-hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       231 ~ell-~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      ++++ ..||+++-|..     .+.|+.+.-++++ =.+++.-|-+++- .+|- +.|.+..|.
T Consensus       283 ~e~~~~~~DVliP~A~-----~n~i~~~~A~~l~-ak~V~EgAN~p~t-~~A~-~~L~~~Gi~  337 (419)
T 3aoe_E          283 EEVFGLEAEVLVLAAR-----EGALDGDRARQVQ-AQAVVEVANFGLN-PEAE-AYLLGKGAL  337 (419)
T ss_dssp             TTGGGSSCSEEEECSC-----TTCBCHHHHTTCC-CSEEEECSTTCBC-HHHH-HHHHHHTCE
T ss_pred             hhhhccCceEEEeccc-----ccccccchHhhCC-ceEEEECCCCcCC-HHHH-HHHHHCCCE
Confidence            2333 47999988853     6678888888885 4589999998864 4444 445544443

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=95.09  E-value=0.031  Score=51.26  Aligned_cols=105  Identities=14%  Similarity=0.056  Sum_probs=63.5

Q ss_pred             CEEEEEec-CHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEE
Q 020301          166 QTVGVIGA-GRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~  241 (328)
                      .++.|+|. |++|+.+++.+ ...|++ |...+|....                 ....+...+.+++++..  ..|+++
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l-~~~g~~~V~~VnP~~~g-----------------~~i~G~~vy~sl~el~~~~~~Dv~i   75 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKM-LECGTKIVGGVTPGKGG-----------------QNVHGVPVFDTVKEAVKETDANASV   75 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHH-HHTTCCEEEEECTTCTT-----------------CEETTEEEESSHHHHHHHHCCCEEE
T ss_pred             CEEEEECCCCCHHHHHHHHH-HhCCCeEEEEeCCCCCC-----------------ceECCEeeeCCHHHHhhcCCCCEEE
Confidence            34788899 99999999987 467887 3344543210                 00012334578999998  899999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc-ccCHHHHHHHHHcCCcc
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-VIDEVALVEHLKQNPMF  292 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~-~vde~aL~~aL~~g~i~  292 (328)
                      +++|. +.+...+ ++..++ +... +|..+-|- .-+++.|.++.++..+.
T Consensus        76 i~vp~-~~~~~~v-~ea~~~-Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~  123 (294)
T 2yv1_A           76 IFVPA-PFAKDAV-FEAIDA-GIEL-IVVITEHIPVHDTMEFVNYAEDVGVK  123 (294)
T ss_dssp             ECCCH-HHHHHHH-HHHHHT-TCSE-EEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             EccCH-HHHHHHH-HHHHHC-CCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            99992 2333333 344443 2222 34444442 23466888888875553

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=95.08  E-value=0.03  Score=51.76  Aligned_cols=93  Identities=16%  Similarity=0.167  Sum_probs=60.4

Q ss_pred             CCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh------hc
Q 020301          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (328)
Q Consensus       164 ~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  236 (328)
                      .|+++.|+| .|.||...++.+ +.+|++|++.+++....  ++...+       |..........++.+.+      ..
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~--~~~~~~-------ga~~~~~~~~~~~~~~~~~~~~~~g  217 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLL-KMKGAHTIAVASTDEKL--KIAKEY-------GAEYLINASKEDILRQVLKFTNGKG  217 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEESSHHHH--HHHHHT-------TCSEEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH--HHHHHc-------CCcEEEeCCCchHHHHHHHHhCCCC
Confidence            588999999 899999999985 79999999999876432  122222       22111111112333322      14


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .|+|+.++..  +    .-...++.++++..+|.++
T Consensus       218 ~D~vid~~g~--~----~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          218 VDASFDSVGK--D----TFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             EEEEEECCGG--G----GHHHHHHHEEEEEEEEECC
T ss_pred             ceEEEECCCh--H----HHHHHHHHhccCCEEEEEc
Confidence            7999888762  1    2355677888888888875

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=95.07  E-value=0.039  Score=52.03  Aligned_cols=69  Identities=13%  Similarity=0.145  Sum_probs=45.4

Q ss_pred             CEEEEEe-cCHHHHH-HH----HHHHhcCCcEE----------EEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC
Q 020301          166 QTVGVIG-AGRIGSA-YA----RMMVEGFKMNL----------IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (328)
Q Consensus       166 ~tvgIiG-~G~IG~~-vA----~~l~~~fg~~V----------~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (328)
                      .+||||| +|.||+. .+    +.+.+.-+..+          .++|+++... ++..+.|       +..    ..+.+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a-~~~a~~~-------~~~----~~~~~   74 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKV-EALAKRF-------NIA----RWTTD   74 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHH-HHHHHHT-------TCC----CEESC
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHH-HHHHHHh-------CCC----cccCC
Confidence            3799999 9999997 55    55433333443          4889887542 2222222       211    13579


Q ss_pred             HHHHhhc--CCEEEEcCCC
Q 020301          230 MDEVLRE--ADVISLHPVL  246 (328)
Q Consensus       230 l~ell~~--aDiV~l~~pl  246 (328)
                      ++++++.  .|+|+++.|.
T Consensus        75 ~~~ll~~~~iD~V~i~tp~   93 (383)
T 3oqb_A           75 LDAALADKNDTMFFDAATT   93 (383)
T ss_dssp             HHHHHHCSSCCEEEECSCS
T ss_pred             HHHHhcCCCCCEEEECCCc
Confidence            9999976  8999999994

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=95.05  E-value=0.022  Score=52.90  Aligned_cols=94  Identities=14%  Similarity=0.103  Sum_probs=60.9

Q ss_pred             CCCEEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh------c
Q 020301          164 KGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR------E  236 (328)
Q Consensus       164 ~g~tvgIiG~G-~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------~  236 (328)
                      .|++|.|+|.| .||...++.+ +.+|++|++.+++....  ++...+       |....-.....++.+.+.      .
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~--~~~~~l-------ga~~~~~~~~~~~~~~~~~~~~~~g  213 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLS-QILNFRLIAVTRNNKHT--EELLRL-------GAAYVIDTSTAPLYETVMELTNGIG  213 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESSSTTH--HHHHHH-------TCSEEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCHHHH--HHHHhC-------CCcEEEeCCcccHHHHHHHHhCCCC
Confidence            58899999998 9999999985 78999999999876532  111112       221111111123333222      5


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .|+|+.++.. +.+     ...++.++++..++.++-
T Consensus       214 ~Dvvid~~g~-~~~-----~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          214 ADAAIDSIGG-PDG-----NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             EEEEEESSCH-HHH-----HHHHHTEEEEEEEEECCC
T ss_pred             CcEEEECCCC-hhH-----HHHHHHhcCCCEEEEEee
Confidence            7999988762 222     344578899999999863

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=95.04  E-value=0.024  Score=53.20  Aligned_cols=94  Identities=16%  Similarity=0.134  Sum_probs=61.6

Q ss_pred             CCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-----cC
Q 020301          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (328)
Q Consensus       164 ~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  237 (328)
                      .|+++.|+| .|.||..+++.+ +.+|++|++.+++....  ++...+       |..........++.+.+.     ..
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a-~~~Ga~Vi~~~~~~~~~--~~~~~~-------Ga~~~~~~~~~~~~~~~~~~~~~g~  232 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLS-KKAKCHVIGTCSSDEKS--AFLKSL-------GCDRPINYKTEPVGTVLKQEYPEGV  232 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHH-HHTTCEEEEEESSHHHH--HHHHHT-------TCSEEEETTTSCHHHHHHHHCTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HhCCCEEEEEECCHHHH--HHHHHc-------CCcEEEecCChhHHHHHHHhcCCCC
Confidence            478999999 799999999985 78999999999875432  111112       221111111134444443     47


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      |+|+.++..  +    .-...++.|+++..+|.++-
T Consensus       233 D~vid~~g~--~----~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          233 DVVYESVGG--A----MFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             EEEEECSCT--H----HHHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCCH--H----HHHHHHHHHhcCCEEEEEeC
Confidence            999988873  1    22566778888888888764

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=95.03  E-value=0.082  Score=47.92  Aligned_cols=39  Identities=23%  Similarity=0.123  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       161 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ..+.||++.|.|. |-||+++|+.|+ .-|++|++.++...
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la-~~G~~V~~~~~~~~   84 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYA-REGADVAINYLPAE   84 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEECCGGG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcc
Confidence            4689999999996 679999999985 77999999988743

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=95.02  E-value=0.045  Score=50.73  Aligned_cols=114  Identities=12%  Similarity=0.115  Sum_probs=70.9

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHH----Hhh--c
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLR--E  236 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~--~  236 (328)
                      .|.++.|+|.|.+|...++.+ +.+ |.+|++.+++....  ++.       ++-|........ .++.+    +..  .
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla-~~~g~~~Vi~~~~~~~~~--~~~-------~~lGa~~~i~~~-~~~~~~v~~~t~g~g  239 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQIL-RAVSAARVIAVDLDDDRL--ALA-------REVGADAAVKSG-AGAADAIRELTGGQG  239 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHCCCEEEEEESCHHHH--HHH-------HHTTCSEEEECS-TTHHHHHHHHHGGGC
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCHHHH--HHH-------HHcCCCEEEcCC-CcHHHHHHHHhCCCC
Confidence            588999999999999999985 677 78999999876542  222       222322211111 12222    222  5


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCC------------------------cccCHHHHHHHHHcCCcc
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG------------------------PVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG------------------------~~vde~aL~~aL~~g~i~  292 (328)
                      .|+|+-++.. +++    -...++.++++..++.++-.                        ..-+.+.+.+.+++|++.
T Consensus       240 ~d~v~d~~G~-~~~----~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~  314 (345)
T 3jv7_A          240 ATAVFDFVGA-QST----IDTAQQVVAVDGHISVVGIHAGAHAKVGFFMIPFGASVVTPYWGTRSELMEVVALARAGRLD  314 (345)
T ss_dssp             EEEEEESSCC-HHH----HHHHHHHEEEEEEEEECSCCTTCCEEESTTTSCTTCEEECCCSCCHHHHHHHHHHHHTTCCC
T ss_pred             CeEEEECCCC-HHH----HHHHHHHHhcCCEEEEECCCCCCCCCcCHHHHhCCCEEEEEecCCHHHHHHHHHHHHcCCCc
Confidence            8999988873 211    23455666777777666421                        112456788888999886


Q ss_pred             E
Q 020301          293 R  293 (328)
Q Consensus       293 g  293 (328)
                      -
T Consensus       315 ~  315 (345)
T 3jv7_A          315 I  315 (345)
T ss_dssp             C
T ss_pred             e
Confidence            4

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=94.99  E-value=0.031  Score=51.42  Aligned_cols=94  Identities=13%  Similarity=0.084  Sum_probs=61.4

Q ss_pred             CCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh------hc
Q 020301          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (328)
Q Consensus       164 ~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  236 (328)
                      .|+++.|+| .|.||..+++.+ +..|++|++.+++....  ++...+       |..........++.+.+      ..
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~--~~~~~~-------Ga~~~~~~~~~~~~~~~~~~~~~~g  209 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWA-KALGAKLIGTVSSPEKA--AHAKAL-------GAWETIDYSHEDVAKRVLELTDGKK  209 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESSHHHH--HHHHHH-------TCSEEEETTTSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH--HHHHHc-------CCCEEEeCCCccHHHHHHHHhCCCC
Confidence            588999999 899999999985 78999999999876432  122222       22111111112333322      25


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .|+|+.++..  +    .-...++.++++..++.++.
T Consensus       210 ~Dvvid~~g~--~----~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          210 CPVVYDGVGQ--D----TWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             EEEEEESSCG--G----GHHHHHTTEEEEEEEEECCC
T ss_pred             ceEEEECCCh--H----HHHHHHHHhcCCCEEEEEec
Confidence            8999988763  1    23467788889988888863

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=94.99  E-value=0.03  Score=44.58  Aligned_cols=99  Identities=16%  Similarity=0.144  Sum_probs=65.5

Q ss_pred             CEEEEEec----CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          166 QTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       166 ~tvgIiG~----G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      ++++|||.    |+.|..+.+.| +..|.+|+-.+|....-                   .+...+.++.++-. -|.++
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L-~~~g~~V~pVnP~~~~i-------------------~G~~~y~sl~dlp~-vDlav   63 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERL-KSHGHEFIPVGRKKGEV-------------------LGKTIINERPVIEG-VDTVT   63 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHH-HHHTCCEEEESSSCSEE-------------------TTEECBCSCCCCTT-CCEEE
T ss_pred             CEEEEEccCCCCCCHHHHHHHHH-HHCCCeEEEECCCCCcC-------------------CCeeccCChHHCCC-CCEEE
Confidence            57999998    56899999997 57788999999864321                   12223467777767 99999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      +++| .+.+..++. +..+ +...+++++.  |-  .++.+.+..++..+.
T Consensus        64 i~~p-~~~v~~~v~-e~~~-~g~k~v~~~~--G~--~~~e~~~~a~~~Gir  107 (122)
T 3ff4_A           64 LYIN-PQNQLSEYN-YILS-LKPKRVIFNP--GT--ENEELEEILSENGIE  107 (122)
T ss_dssp             ECSC-HHHHGGGHH-HHHH-HCCSEEEECT--TC--CCHHHHHHHHHTTCE
T ss_pred             EEeC-HHHHHHHHH-HHHh-cCCCEEEECC--CC--ChHHHHHHHHHcCCe
Confidence            9999 244555553 3333 3444676654  32  345666666665555

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.96  E-value=0.13  Score=49.84  Aligned_cols=90  Identities=17%  Similarity=0.221  Sum_probs=61.5

Q ss_pred             cccCCCEEEEEecC----------HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH
Q 020301          161 NLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (328)
Q Consensus       161 ~~l~g~tvgIiG~G----------~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (328)
                      ..+.|++|+|+|+.          .=...+++.| +..|++|.+|||...+....   .|+          .......++
T Consensus       329 ~~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L-~~~Ga~V~~~DP~~~~~~~~---~~~----------~~~~~~~~~  394 (444)
T 3vtf_A          329 GGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLL-LERGARVYVHDPMAMEKARA---VLG----------DSVTYVEDP  394 (444)
T ss_dssp             TCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHH-HHTTCEEEEECSSTHHHHHH---HHG----------GGSEECSCH
T ss_pred             cccCCCEEEEEeeecCCCCCccccCcHHHHHHHH-HHCCCEEEEECCCCChHHHH---hcC----------CCceecCCH
Confidence            35899999999986          2366788987 68999999999986432211   111          112235689


Q ss_pred             HHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       231 ~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      ++++++||.|+++.+- ++.+.+ +      + ++.+++++ |+
T Consensus       395 ~~a~~~aDavvi~t~h-~ef~~l-d------~-~~~vv~D~-Rn  428 (444)
T 3vtf_A          395 QALLDQVEGVIIATAW-PQYEGL-D------Y-RGKVVVDG-RY  428 (444)
T ss_dssp             HHHHHHCSEEEECSCC-GGGGGS-C------C-TTCEEEES-SC
T ss_pred             HHHHhCCCEEEEccCC-HHHhCC-C------c-CCCEEEEC-CC
Confidence            9999999999999762 333332 1      2 36788885 43

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=94.96  E-value=0.047  Score=49.61  Aligned_cols=39  Identities=15%  Similarity=0.215  Sum_probs=34.2

Q ss_pred             cccCCCEEEEEecC---HHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       161 ~~l~g~tvgIiG~G---~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ..+.||++.|.|.+   -||+++|+.|+ ..|++|++.+++..
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la-~~G~~V~~~~r~~~   67 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVC-AQGAEVALTYLSET   67 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHH-HCCCEEEEEeCChH
Confidence            46899999999986   79999999985 77999999998853

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=94.95  E-value=0.096  Score=44.46  Aligned_cols=97  Identities=10%  Similarity=0.047  Sum_probs=59.2

Q ss_pred             CEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccc-cccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiV~l~  243 (328)
                      ++|.|.| .|.||+.+++.|+ .-|.+|++.+|+.....+ .        . .+...... ..-.+. +.+..+|+|+.+
T Consensus         1 MkvlVtGatG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~~-~--------~-~~~~~~~~D~~d~~~-~~~~~~d~vi~~   68 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAK-NRGHEVTAIVRNAGKITQ-T--------H-KDINILQKDIFDLTL-SDLSDQNVVVDA   68 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCSHHHHH-H--------C-SSSEEEECCGGGCCH-HHHTTCSEEEEC
T ss_pred             CeEEEEcCCchhHHHHHHHHH-hCCCEEEEEEcCchhhhh-c--------c-CCCeEEeccccChhh-hhhcCCCEEEEC
Confidence            3689999 5999999999984 679999999998654211 0        0 11111100 011112 678999999998


Q ss_pred             CCCChhhhc---cccHHHHhcCCC--CcEEEEcCCC
Q 020301          244 PVLDKTTYH---LINKERLATMKK--EAILVNCSRG  274 (328)
Q Consensus       244 ~plt~~t~~---li~~~~~~~mk~--ga~lIN~aRG  274 (328)
                      ...+.....   ......++.|+.  ...+|++|..
T Consensus        69 ag~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           69 YGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             CCSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             CcCCccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence            876543221   112445566654  3677777654

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=94.91  E-value=0.037  Score=53.02  Aligned_cols=78  Identities=12%  Similarity=0.061  Sum_probs=48.9

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCC---cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCc--cccccCCHHHHhhc--CC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLRE--AD  238 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~--aD  238 (328)
                      ++++|+|.|.||+.+|+.|+ ..|   .+|.++|++.... ++..+.+.... .......  ......++++++++  +|
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~-~~g~~~~~V~v~~r~~~~~-~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~~~D   78 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMA-MNREVFSHITLASRTLSKC-QEIAQSIKAKG-YGEIDITTVDADSIEELVALINEVKPQ   78 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TCTTTCCEEEEEESCHHHH-HHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCceEEEEEECCHHHH-HHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhhCCC
Confidence            57999999999999999975 556   4999999986542 22222221100 0001000  01112357788888  99


Q ss_pred             EEEEcCCC
Q 020301          239 VISLHPVL  246 (328)
Q Consensus       239 iV~l~~pl  246 (328)
                      +|+.+.|.
T Consensus        79 vVin~ag~   86 (405)
T 4ina_A           79 IVLNIALP   86 (405)
T ss_dssp             EEEECSCG
T ss_pred             EEEECCCc
Confidence            99999883

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.89  E-value=0.017  Score=53.62  Aligned_cols=94  Identities=13%  Similarity=0.146  Sum_probs=57.9

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcC--CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcccccc-CC-HHHHhh--cC
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SS-MDEVLR--EA  237 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~f--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-l~ell~--~a  237 (328)
                      .|.+|.|+|.|.+|...++.+ +.+  |++|++.+++....  ++...+       |....-.... .+ .+++-.  ..
T Consensus       170 ~g~~VlV~GaG~vG~~aiqla-k~~~~Ga~Vi~~~~~~~~~--~~~~~l-------Ga~~vi~~~~~~~~~~~~~~g~g~  239 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQIL-KALMKNITIVGISRSKKHR--DFALEL-------GADYVSEMKDAESLINKLTDGLGA  239 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHH-HHHCTTCEEEEECSCHHHH--HHHHHH-------TCSEEECHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHhcCCCEEEEEeCCHHHH--HHHHHh-------CCCEEeccccchHHHHHhhcCCCc
Confidence            688999999999999999985 788  99999999876432  111222       2211100000 01 122221  57


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      |+|+-++.. +++    -+..++.++++..++.++
T Consensus       240 D~vid~~g~-~~~----~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          240 SIAIDLVGT-EET----TYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             EEEEESSCC-HHH----HHHHHHHEEEEEEEEECC
T ss_pred             cEEEECCCC-hHH----HHHHHHHhhcCCEEEEeC
Confidence            999988873 211    244566777777777665

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=94.89  E-value=0.026  Score=51.21  Aligned_cols=74  Identities=20%  Similarity=0.125  Sum_probs=45.1

Q ss_pred             CEEEEEec-CHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .+|+|+|+ |+||+.+++.+...-|+++. ++|+.........      ..+..+....+.....++++++..+|+|+-+
T Consensus         6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d------~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDf   79 (273)
T 1dih_A            6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSD------AGELAGAGKTGVTVQSSLDAVKDDFDVFIDF   79 (273)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCC------TTCSSSSSCCSCCEESCSTTTTTSCSEEEEC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhh------HHHHcCCCcCCceecCCHHHHhcCCCEEEEc
Confidence            47999999 99999999976545688877 6776542100000      0000011111222245788888899999955


Q ss_pred             CC
Q 020301          244 PV  245 (328)
Q Consensus       244 ~p  245 (328)
                      .+
T Consensus        80 t~   81 (273)
T 1dih_A           80 TR   81 (273)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=94.88  E-value=0.13  Score=47.75  Aligned_cols=102  Identities=15%  Similarity=0.129  Sum_probs=59.1

Q ss_pred             CEEEEEec-CHHHHHHHHHHHhcCCc-------EEEEEcCCc---hhHHHHHHhhhhhhhhcCCC-CCccccccCCHHHH
Q 020301          166 QTVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQ---ATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEV  233 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~~fg~-------~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~el  233 (328)
                      .+|.|+|. |.+|+.++..|+ .-|+       +|..+|+..   ....+.....+    .+... .........++.+.
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~-~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl----~~~~~~~~~~i~~~~~~~~a   80 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIA-NGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEI----DDCAFPLLAGMTAHADPMTA   80 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHH-TTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHH----HTTTCTTEEEEEEESSHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCCcCCCCCCEEEEEcCCCccccccchhhHHHH----hhhcccccCcEEEecCcHHH
Confidence            58999998 999999999874 4554       899999871   12122111111    11000 01112223678899


Q ss_pred             hhcCCEEEEcCCCChh---hhc-c--cc----H---HHHhcC-CCCcEEEEcC
Q 020301          234 LREADVISLHPVLDKT---TYH-L--IN----K---ERLATM-KKEAILVNCS  272 (328)
Q Consensus       234 l~~aDiV~l~~plt~~---t~~-l--i~----~---~~~~~m-k~ga~lIN~a  272 (328)
                      ++.||+|+.+......   ++. +  .|    .   +.+.+. +|.+++|+++
T Consensus        81 l~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S  133 (329)
T 1b8p_A           81 FKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG  133 (329)
T ss_dssp             TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             hCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc
Confidence            9999999887653221   110 1  11    1   122333 4789999997

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=94.88  E-value=0.044  Score=51.35  Aligned_cols=30  Identities=23%  Similarity=0.455  Sum_probs=24.3

Q ss_pred             EEEEEecCHHHHHHHHHHHhc--CCcEEEEEc
Q 020301          167 TVGVIGAGRIGSAYARMMVEG--FKMNLIYYD  196 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~--fg~~V~~~d  196 (328)
                      +|||+|+|+||+.+.|.|...  -+++|.+.+
T Consensus         4 kVgI~G~G~IGr~v~r~l~~~~~~~~evvaIn   35 (339)
T 3b1j_A            4 RVAINGFGRIGRNFLRCWFGRQNTDLEVVAIN   35 (339)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSCCSEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence            799999999999999987433  358887654

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=94.86  E-value=0.03  Score=50.18  Aligned_cols=38  Identities=21%  Similarity=0.273  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~---G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .+.||++.|.|.   |-||+++|+.|+ .-|++|+..+|+..
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l~-~~G~~V~~~~r~~~   43 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSCF-NQGATLAFTYLNES   43 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHH-TTTCEEEEEESSTT
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence            477999999998   699999999985 67999999998764

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=94.84  E-value=0.3  Score=45.01  Aligned_cols=106  Identities=17%  Similarity=0.221  Sum_probs=67.0

Q ss_pred             ccCCCEEEEEec---CHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301          162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (328)
Q Consensus       162 ~l~g~tvgIiG~---G~IG~~vA~~l~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (328)
                      .+.|.+|++||=   |++..+.+..+ ..| |++|.+..|..-...+...+    .++..|.   ......++++.++.|
T Consensus       148 ~l~glkva~vGD~~~~rva~Sl~~~~-~~~~G~~v~~~~P~~~~~~~~~~~----~~~~~g~---~~~~~~d~~eav~~a  219 (306)
T 4ekn_B          148 RIDGIKIAFVGDLKYGRTVHSLVYAL-SLFENVEMYFVSPKELRLPKDIIE----DLKAKNI---KFYEKESLDDLDDDI  219 (306)
T ss_dssp             CSTTCEEEEESCTTTCHHHHHHHHHH-HTSSSCEEEEECCGGGCCCHHHHH----HHHHTTC---CEEEESCGGGCCTTC
T ss_pred             CcCCCEEEEEcCCCCCcHHHHHHHHH-HhcCCCEEEEECCcccccCHHHHH----HHHHcCC---EEEEEcCHHHHhcCC
Confidence            478999999997   58999999986 689 99999998853211111111    1122221   122346899999999


Q ss_pred             CEEEEcC------CCChhh-----hccccHHHHhcCCCCcEEEEcC-CCccc
Q 020301          238 DVISLHP------VLDKTT-----YHLINKERLATMKKEAILVNCS-RGPVI  277 (328)
Q Consensus       238 DiV~l~~------plt~~t-----~~li~~~~~~~mk~ga~lIN~a-RG~~v  277 (328)
                      |+|....      |...+-     ..-+|.+.+++  ++++|.-+. ||.=|
T Consensus       220 Dvvy~~~~q~er~~~~~e~~~~~~~y~v~~~~l~~--~~ai~mH~lPRg~EI  269 (306)
T 4ekn_B          220 DVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEG--KKFIIMHPLPRVDEI  269 (306)
T ss_dssp             SEEEECCCCGGGCCSHHHHHHHHHHHCBCHHHHTT--CCCEEECCSCCSSSB
T ss_pred             CEEEeCCcccccCCCHHHHHHhccCcEECHHHHcC--CCCEEECCCCCCCee
Confidence            9998643      211111     13367888876  777777553 55433

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=94.80  E-value=0.046  Score=52.00  Aligned_cols=31  Identities=23%  Similarity=0.409  Sum_probs=24.7

Q ss_pred             EEEEEecCHHHHHHHHHHHhc--CCcEEEEEcC
Q 020301          167 TVGVIGAGRIGSAYARMMVEG--FKMNLIYYDL  197 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~--fg~~V~~~d~  197 (328)
                      +|||+|+|+||+.++|.|...  -+++|.+.+.
T Consensus         4 kVgInGfGrIGr~vlR~l~~~~~~~veIVaInd   36 (380)
T 2d2i_A            4 RVAINGFGRIGRNFLRCWFGRQNTDLEVVAINN   36 (380)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHhcCCCCCEEEEEEec
Confidence            799999999999999986433  3588877643

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=94.79  E-value=0.024  Score=52.56  Aligned_cols=71  Identities=15%  Similarity=0.103  Sum_probs=45.3

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc--CCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l  242 (328)
                      .++||||+|.+|+..++.+  .-+++|. ++|+++....+...+.    .++.+.   ....+.+++++++.  .|+|++
T Consensus         3 ~rvgiiG~G~~~~~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~ll~~~~vD~V~I   73 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL--DEECSITGIAPGVPEEDLSKLEKA----ISEMNI---KPKKYNNWWEMLEKEKPDILVI   73 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC--CTTEEEEEEECSSTTCCCHHHHHH----HHTTTC---CCEECSSHHHHHHHHCCSEEEE
T ss_pred             eEEEEEccchhHHHHHHhc--CCCcEEEEEecCCchhhHHHHHHH----HHHcCC---CCcccCCHHHHhcCCCCCEEEE
Confidence            4799999999999777663  4578876 5787753111111110    111121   11246799999975  899999


Q ss_pred             cCC
Q 020301          243 HPV  245 (328)
Q Consensus       243 ~~p  245 (328)
                      +.|
T Consensus        74 ~tp   76 (337)
T 3ip3_A           74 NTV   76 (337)
T ss_dssp             CSS
T ss_pred             eCC
Confidence            988

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.74  E-value=0.11  Score=48.46  Aligned_cols=97  Identities=15%  Similarity=0.079  Sum_probs=59.4

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCcccc--ccCCHHHHh------
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK--RASSMDEVL------  234 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell------  234 (328)
                      .|.+|.|+|.|.+|...++.+ +.+|++ |++.+++..+.  ++...+.     .........  ...++.+.+      
T Consensus       179 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~--~~a~~l~-----~~~~~~~~~~~~~~~~~~~v~~~t~g  250 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCA-KAAGACPLVITDIDEGRL--KFAKEIC-----PEVVTHKVERLSAEESAKKIVESFGG  250 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HHTTCCSEEEEESCHHHH--HHHHHHC-----TTCEEEECCSCCHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH--HHHHHhc-----hhcccccccccchHHHHHHHHHHhCC
Confidence            478999999999999999984 899998 99998876432  1111110     000000000  001122222      


Q ss_pred             hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       235 ~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      ...|+|+-++.. +.+    -...++.++++..++.++-
T Consensus       251 ~g~Dvvid~~g~-~~~----~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          251 IEPAVALECTGV-ESS----IAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             CCCSEEEECSCC-HHH----HHHHHHHSCTTCEEEECCC
T ss_pred             CCCCEEEECCCC-hHH----HHHHHHHhcCCCEEEEEcc
Confidence            258999988773 221    2456778899999998864

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.74  E-value=0.045  Score=50.27  Aligned_cols=94  Identities=13%  Similarity=0.090  Sum_probs=60.0

Q ss_pred             CCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHH-HHhh-----c
Q 020301          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD-EVLR-----E  236 (328)
Q Consensus       164 ~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-ell~-----~  236 (328)
                      .|+++.|+| .|.||..+++.+ +..|++|++.+++.... + ....+       +..........++. ++.+     .
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a-~~~G~~V~~~~~~~~~~-~-~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~  209 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWA-KALGAKLIGTVGTAQKA-Q-SALKA-------GAWQVINYREEDLVERLKEITGGKK  209 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHHTCEEEEEESSHHHH-H-HHHHH-------TCSEEEETTTSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHH-H-HHHHc-------CCCEEEECCCccHHHHHHHHhCCCC
Confidence            488999999 799999999986 78899999999875432 1 11111       21111111112222 2221     4


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .|+++.+..  .++    -+..++.|+++..++.++.
T Consensus       210 ~D~vi~~~g--~~~----~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          210 VRVVYDSVG--RDT----WERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             EEEEEECSC--GGG----HHHHHHTEEEEEEEEECCC
T ss_pred             ceEEEECCc--hHH----HHHHHHHhcCCCEEEEEec
Confidence            799998876  222    2567788888888888763

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=94.73  E-value=0.14  Score=49.88  Aligned_cols=110  Identities=15%  Similarity=0.154  Sum_probs=67.9

Q ss_pred             ccCCCEEEEEecCH----------HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcC-CCC-CccccccCC
Q 020301          162 LLKGQTVGVIGAGR----------IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQ-PVTWKRASS  229 (328)
Q Consensus       162 ~l~g~tvgIiG~G~----------IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~  229 (328)
                      .+.|++|+|+|+.-          -...+++.| ...|++|.+|||......  ....|. ..... +.. ........+
T Consensus       326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L-~~~g~~v~~~DP~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~  401 (467)
T 2q3e_A          326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYL-MDEGAHLHIYDPKVPREQ--IVVDLS-HPGVSEDDQVSRLVTISKD  401 (467)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSSCHHH--HHHHHC-C------CHHHHHEEECSS
T ss_pred             ccCCCEEEEEeeccCCCCcchhhChHHHHHHHH-HHCCCEEEEEcCccCHHH--Hhhhhc-cccccccccccCceeecCC
Confidence            47899999999873          677899987 689999999999853321  001110 00000 000 001122347


Q ss_pred             HHHHhhcCCEEEEcCCCChhhhccccHHHH-hcCCCCcEEEEcCCCcccCH
Q 020301          230 MDEVLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNCSRGPVIDE  279 (328)
Q Consensus       230 l~ell~~aDiV~l~~plt~~t~~li~~~~~-~~mk~ga~lIN~aRG~~vde  279 (328)
                      +++.++.||.|+++..- ++.+. ++-+.+ +.|+...+++++ |+ ++|.
T Consensus       402 ~~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~~~~~i~D~-r~-~~~~  448 (467)
T 2q3e_A          402 PYEACDGAHAVVICTEW-DMFKE-LDYERIHKKMLKPAFIFDG-RR-VLDG  448 (467)
T ss_dssp             HHHHHTTCSEEEECSCC-GGGGG-SCHHHHHHHSCSSCEEEES-SC-TTTT
T ss_pred             HHHHHhCCcEEEEecCC-hhhhc-CCHHHHHHhcCCCCEEEeC-CC-cCCc
Confidence            88899999999999873 45544 454444 567776668887 55 3444

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=94.71  E-value=0.03  Score=53.12  Aligned_cols=68  Identities=18%  Similarity=0.214  Sum_probs=47.1

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcC--CcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~f--g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      -.+|||||.| +|+.-++.+ +..  ++++. ++|++... .+++.+.|       |.     ..+.++++++...|+++
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~-~~~~~~~elvav~~~~~~~-a~~~a~~~-------gv-----~~~~~~~~l~~~~D~v~   71 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAF-MQPPEGLELVGLLAQGSAR-SRELAHAF-------GI-----PLYTSPEQITGMPDIAC   71 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTT-SSCCTTEEEEEEECCSSHH-HHHHHHHT-------TC-----CEESSGGGCCSCCSEEE
T ss_pred             CCEEEEEehH-HHHHHHHHH-HhCCCCeEEEEEECCCHHH-HHHHHHHh-------CC-----CEECCHHHHhcCCCEEE
Confidence            3579999999 799877765 344  67876 56887643 23333333       22     23579999999999999


Q ss_pred             EcCCCC
Q 020301          242 LHPVLD  247 (328)
Q Consensus       242 l~~plt  247 (328)
                      +++|..
T Consensus        72 i~~p~~   77 (372)
T 4gmf_A           72 IVVRST   77 (372)
T ss_dssp             ECCC--
T ss_pred             EECCCc
Confidence            999843

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=94.69  E-value=0.048  Score=51.48  Aligned_cols=95  Identities=17%  Similarity=0.140  Sum_probs=57.3

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc---cCCHHH----Hhh
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDE----VLR  235 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~e----ll~  235 (328)
                      .|.+|.|+|.|.+|...++.+ +.+| .+|++.+++....  ++...+       |....-...   ..++.+    +..
T Consensus       195 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~--~~~~~l-------Ga~~vi~~~~~~~~~~~~~v~~~~~  264 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIA-RSLGAENVIVIAGSPNRL--KLAEEI-------GADLTLNRRETSVEERRKAIMDITH  264 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHH-HHTTBSEEEEEESCHHHH--HHHHHT-------TCSEEEETTTSCHHHHHHHHHHHTT
T ss_pred             CCCEEEEECcCHHHHHHHHHH-HHcCCceEEEEcCCHHHH--HHHHHc-------CCcEEEeccccCcchHHHHHHHHhC
Confidence            478999999999999999984 8999 5999999876432  111222       221110000   012222    221


Q ss_pred             --cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          236 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       236 --~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                        ..|+|+-++.....     -...++.++++..+|.++.
T Consensus       265 g~g~Dvvid~~g~~~~-----~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          265 GRGADFILEATGDSRA-----LLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             TSCEEEEEECSSCTTH-----HHHHHHHEEEEEEEEECCC
T ss_pred             CCCCcEEEECCCCHHH-----HHHHHHHHhcCCEEEEEec
Confidence              47999988763221     1345566677777776653

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=94.69  E-value=0.17  Score=44.71  Aligned_cols=38  Identities=24%  Similarity=0.303  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEec-CH--HHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGA-GR--IGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~--IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ++.||++.|.|. |.  ||+++|+.|+ .-|++|+..+++..
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~-~~G~~V~~~~r~~~   44 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLH-EAGARLIFTYAGER   44 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHH-HCCCEEEEecCchH
Confidence            588999999997 45  9999999985 67999999988753

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=94.66  E-value=0.065  Score=47.82  Aligned_cols=111  Identities=16%  Similarity=0.199  Sum_probs=64.9

Q ss_pred             ccccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccc-cccC---CHHHHh
Q 020301          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRAS---SMDEVL  234 (328)
Q Consensus       160 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~l~ell  234 (328)
                      ...+.||++.|.|. |-||+++|+.|+ .-|++|++.+++.....++..+.    .+..+...... ....   ++++++
T Consensus        13 ~~~l~~k~~lVTGas~gIG~aia~~l~-~~G~~V~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~Dv~~~~~v~~~~   87 (270)
T 3is3_A           13 PGRLDGKVALVTGSGRGIGAAVAVHLG-RLGAKVVVNYANSTKDAEKVVSE----IKALGSDAIAIKADIRQVPEIVKLF   87 (270)
T ss_dssp             TTCCTTCEEEESCTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHH----HHHTTCCEEEEECCTTSHHHHHHHH
T ss_pred             CCCcCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCCHHHHHHHHHH----HHhcCCcEEEEEcCCCCHHHHHHHH
Confidence            35799999999987 579999999985 78999999776554433322221    11111110000 0112   233444


Q ss_pred             h-------cCCEEEEcCCCCh---------hh-hc----------cccHHHHhcCCCCcEEEEcCCCc
Q 020301          235 R-------EADVISLHPVLDK---------TT-YH----------LINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       235 ~-------~aDiV~l~~plt~---------~t-~~----------li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      +       .-|+++.+.-...         +. ..          .+.+..+..|+++..+||++...
T Consensus        88 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  155 (270)
T 3is3_A           88 DQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT  155 (270)
T ss_dssp             HHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence            4       5699987654321         10 01          12355677888888899987643

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.64  E-value=0.1  Score=50.23  Aligned_cols=97  Identities=22%  Similarity=0.125  Sum_probs=60.3

Q ss_pred             CCCEEEEEecC----------HHHHHHHHHHHhcCCcEEEEEcCCchhHHH-HHHhhhhhhhhcCCCCCccccccCCHHH
Q 020301          164 KGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLE-KFVTAYGQFLKANGEQPVTWKRASSMDE  232 (328)
Q Consensus       164 ~g~tvgIiG~G----------~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~e  232 (328)
                      .|++|+|+|+.          .-...+++.| ...|++|.+|||....... .....|+..    ...........++++
T Consensus       312 ~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L-~~~g~~v~~~DP~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  386 (436)
T 1mv8_A          312 DTRKVGLLGLSFKAGTDDLRESPLVELAEML-IGKGYELRIFDRNVEYARVHGANKEYIES----KIPHVSSLLVSDLDE  386 (436)
T ss_dssp             SCCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECHHHHHHTTSSSCHHHHHH----TSHHHHTTBCSCHHH
T ss_pred             cCCEEEEEccccCCCCCccccCcHHHHHHHH-HHCCCEEEEECCCCChhhccchhhhhccc----ccccccccccCCHHH
Confidence            68999999997          5678899997 6899999999997432100 000011100    000000012357889


Q ss_pred             HhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEc
Q 020301          233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       233 ll~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~  271 (328)
                      .++.||+|+++..- ++.+.+ +   .+.|+ +.+++++
T Consensus       387 ~~~~~d~~vi~~~~-~~~~~~-~---~~~~~-~~~i~D~  419 (436)
T 1mv8_A          387 VVASSDVLVLGNGD-ELFVDL-V---NKTPS-GKKLVDL  419 (436)
T ss_dssp             HHHHCSEEEECSCC-GGGHHH-H---HSCCT-TCEEEES
T ss_pred             HHhCCcEEEEeCCc-HHHHhh-h---HHhcC-CCEEEEC
Confidence            99999999999873 343331 2   44566 6788887

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=94.63  E-value=0.036  Score=51.78  Aligned_cols=94  Identities=12%  Similarity=0.115  Sum_probs=58.5

Q ss_pred             cCCCEEEEEecCHHHHHH-HHHHH-hcCCcE-EEEEcCCch---hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-
Q 020301          163 LKGQTVGVIGAGRIGSAY-ARMMV-EGFKMN-LIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-  235 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~v-A~~l~-~~fg~~-V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-  235 (328)
                      ..+.+|.|+|.|.+|... ++. + +.+|++ |++.+++..   ..  ++...+       |.... .....++.+ +. 
T Consensus       171 ~~~~~VlV~GaG~vG~~a~iql-a~k~~Ga~~Vi~~~~~~~~~~~~--~~~~~l-------Ga~~v-~~~~~~~~~-i~~  238 (357)
T 2b5w_A          171 WDPSSAFVLGNGSLGLLTLAML-KVDDKGYENLYCLGRRDRPDPTI--DIIEEL-------DATYV-DSRQTPVED-VPD  238 (357)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHH-HHCTTCCCEEEEEECCCSSCHHH--HHHHHT-------TCEEE-ETTTSCGGG-HHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHHHcCCcEEEEEeCCcccHHHH--HHHHHc-------CCccc-CCCccCHHH-HHH
Confidence            345899999999999999 887 6 789997 999998764   21  122222       22111 111123333 22 


Q ss_pred             ---cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          236 ---EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       236 ---~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                         ..|+|+-++.. +.+    -...++.++++..++.++-
T Consensus       239 ~~gg~Dvvid~~g~-~~~----~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          239 VYEQMDFIYEATGF-PKH----AIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             HSCCEEEEEECSCC-HHH----HHHHHHHEEEEEEEEECCC
T ss_pred             hCCCCCEEEECCCC-hHH----HHHHHHHHhcCCEEEEEeC
Confidence               47999888763 221    2445666777777777653

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=94.61  E-value=0.16  Score=47.58  Aligned_cols=96  Identities=19%  Similarity=0.188  Sum_probs=60.8

Q ss_pred             CCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh---hcCCE
Q 020301          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READV  239 (328)
Q Consensus       164 ~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDi  239 (328)
                      .|++|.|+| .|.||...++.+ +.+|++|++.+. ... . ++...+       |..........++.+.+   ...|+
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla-~~~Ga~Vi~~~~-~~~-~-~~~~~l-------Ga~~v~~~~~~~~~~~~~~~~g~D~  251 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVM-KAWDAHVTAVCS-QDA-S-ELVRKL-------GADDVIDYKSGSVEEQLKSLKPFDF  251 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEEC-GGG-H-HHHHHT-------TCSEEEETTSSCHHHHHHTSCCBSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HhCCCEEEEEeC-hHH-H-HHHHHc-------CCCEEEECCchHHHHHHhhcCCCCE
Confidence            589999999 799999999985 789999998873 322 1 222222       22111111112343333   35899


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      |+-++.....+    -...+..++++..+|.++..
T Consensus       252 vid~~g~~~~~----~~~~~~~l~~~G~iv~~g~~  282 (375)
T 2vn8_A          252 ILDNVGGSTET----WAPDFLKKWSGATYVTLVTP  282 (375)
T ss_dssp             EEESSCTTHHH----HGGGGBCSSSCCEEEESCCS
T ss_pred             EEECCCChhhh----hHHHHHhhcCCcEEEEeCCC
Confidence            99988743121    13456788999999998743

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=94.60  E-value=0.058  Score=50.66  Aligned_cols=99  Identities=16%  Similarity=0.238  Sum_probs=50.7

Q ss_pred             CEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEc-CCchhHHHHHHhhhhhhhhcC----CCCCccccccCCHHHHhhcCCE
Q 020301          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYD-LYQATRLEKFVTAYGQFLKAN----GEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       166 ~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      .+|||+| +|.||+.+.+.|...=.+++.+.. ..... ...+.+.|+ +....    +.....+.. .+.++ +..+|+
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~-g~~~~~~~~-~~~~~~~~~~~~~~~~~~-~d~~~-~~~vDv   80 (350)
T 2ep5_A            5 IKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKI-GKKYKDAVK-WIEQGDIPEEVQDLPIVS-TNYED-HKDVDV   80 (350)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGT-TSBHHHHCC-CCSSSSCCHHHHTCBEEC-SSGGG-GTTCSE
T ss_pred             cEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhc-CCCHHHhcC-cccccccccCCceeEEee-CCHHH-hcCCCE
Confidence            4799999 899999999987433356877663 22111 011111111 00000    000011111 13344 478999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      |++|+|.. .+.. +-...   ++.|+.+|+.+-
T Consensus        81 Vf~atp~~-~s~~-~a~~~---~~aG~~VId~s~  109 (350)
T 2ep5_A           81 VLSALPNE-LAES-IELEL---VKNGKIVVSNAS  109 (350)
T ss_dssp             EEECCCHH-HHHH-HHHHH---HHTTCEEEECSS
T ss_pred             EEECCChH-HHHH-HHHHH---HHCCCEEEECCc
Confidence            99999832 2222 21222   345777888763

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=94.60  E-value=0.066  Score=50.69  Aligned_cols=99  Identities=19%  Similarity=0.127  Sum_probs=60.4

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh----h--c
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL----R--E  236 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell----~--~  236 (328)
                      .|.+|.|+|.|.+|...++. ++.+|+ +|++.|++....  ++..       +-|..........++.+.+    .  .
T Consensus       185 ~g~~VlV~GaG~vG~~aiql-Ak~~Ga~~Vi~~~~~~~~~--~~a~-------~lGa~~i~~~~~~~~~~~v~~~t~g~g  254 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAAS-ARLLGAAVVIVGDLNPARL--AHAK-------AQGFEIADLSLDTPLHEQIAALLGEPE  254 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHTTCSEEEEEESCHHHH--HHHH-------HTTCEEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCEEEEECCcHHHHHHHHH-HHHCCCCeEEEEcCCHHHH--HHHH-------HcCCcEEccCCcchHHHHHHHHhCCCC
Confidence            47899999999999999998 489999 799998876432  1222       2232211111111233222    1  4


Q ss_pred             CCEEEEcCCCChhh-----hc-----cccHHHHhcCCCCcEEEEcC
Q 020301          237 ADVISLHPVLDKTT-----YH-----LINKERLATMKKEAILVNCS  272 (328)
Q Consensus       237 aDiV~l~~plt~~t-----~~-----li~~~~~~~mk~ga~lIN~a  272 (328)
                      .|+|+-++......     .+     -.-...++.++++..++.++
T Consensus       255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          255 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             CCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence            79999988743100     00     01246677888888888765

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=94.58  E-value=0.088  Score=48.85  Aligned_cols=92  Identities=12%  Similarity=0.080  Sum_probs=60.1

Q ss_pred             CEEEEE-ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh------hcCC
Q 020301          166 QTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------READ  238 (328)
Q Consensus       166 ~tvgIi-G~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~aD  238 (328)
                      +++.|. |.|.||...++.+ +.+|++|++.+++....  ++...+       |..........++.+.+      ...|
T Consensus       166 ~~vli~gg~g~vG~~a~qla-~~~Ga~Vi~~~~~~~~~--~~~~~~-------Ga~~~~~~~~~~~~~~v~~~~~~~g~D  235 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLA-KEEGFRPIVTVRRDEQI--ALLKDI-------GAAHVLNEKAPDFEATLREVMKAEQPR  235 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESCGGGH--HHHHHH-------TCSEEEETTSTTHHHHHHHHHHHHCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH--HHHHHc-------CCCEEEECCcHHHHHHHHHHhcCCCCc
Confidence            567665 9999999999985 78999999999876542  111222       22111111112333332      2699


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      +|+-++.. +.    + ...++.++++..+|.++.
T Consensus       236 ~vid~~g~-~~----~-~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          236 IFLDAVTG-PL----A-SAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             EEEESSCH-HH----H-HHHHHHSCTTCEEEECCC
T ss_pred             EEEECCCC-hh----H-HHHHhhhcCCCEEEEEec
Confidence            99988762 21    2 667899999999999973

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=94.57  E-value=0.71  Score=44.79  Aligned_cols=133  Identities=17%  Similarity=0.180  Sum_probs=93.0

Q ss_pred             CCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhc
Q 020301          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG  187 (328)
Q Consensus       108 ~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~  187 (328)
                      ..|+|.|+--   +.+|=-+++-+++.+|-                     .|..|...++.|.|.|.-|-.+|+.+ ..
T Consensus       186 ~~ipvFnDD~---qGTA~V~lAgllnAlki---------------------~gk~l~d~riV~~GAGaAGigia~ll-~~  240 (487)
T 3nv9_A          186 CDIPVWHDDQ---QGTASVTLAGLLNALKL---------------------VKKDIHECRMVFIGAGSSNTTCLRLI-VT  240 (487)
T ss_dssp             CSSCEEETTT---HHHHHHHHHHHHHHHHH---------------------HTCCGGGCCEEEECCSHHHHHHHHHH-HH
T ss_pred             ccCCcccccc---chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECCCHHHHHHHHHH-HH
Confidence            4799999753   45677788888877763                     24578889999999999999999997 57


Q ss_pred             CCc---EEEEEcCCc----h-hHHHH-----HHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccc
Q 020301          188 FKM---NLIYYDLYQ----A-TRLEK-----FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (328)
Q Consensus       188 fg~---~V~~~d~~~----~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li  254 (328)
                      .|.   +++.+|+.-    . .....     +...|   ++....     ....+|.|+++.+|+++=. .. . ..+.|
T Consensus       241 ~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~---A~~~n~-----~~~~~L~eav~~adVlIG~-S~-~-~pg~f  309 (487)
T 3nv9_A          241 AGADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEI---CETTNP-----SKFGSIAEACVGADVLISL-ST-P-GPGVV  309 (487)
T ss_dssp             TTCCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHH---HHHSCT-----TCCCSHHHHHTTCSEEEEC-CC-S-SCCCC
T ss_pred             cCCCcccEEEEeccccccCCcchhhhhcccHHHHHH---HHhccc-----ccCCCHHHHHhcCCEEEEe-cc-c-CCCCC
Confidence            898   899999752    1 11111     00111   111110     0235899999999977533 21 1 25789


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcc
Q 020301          255 NKERLATMKKEAILVNCSRGPV  276 (328)
Q Consensus       255 ~~~~~~~mk~ga~lIN~aRG~~  276 (328)
                      .++.++.|.+..++.=.|.-..
T Consensus       310 t~e~V~~Ma~~PIIFaLSNPtp  331 (487)
T 3nv9_A          310 KAEWIKSMGEKPIVFCCANPVP  331 (487)
T ss_dssp             CHHHHHTSCSSCEEEECCSSSC
T ss_pred             CHHHHHhhcCCCEEEECCCCCc
Confidence            9999999999999998887653

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=94.57  E-value=0.079  Score=48.06  Aligned_cols=38  Identities=18%  Similarity=0.187  Sum_probs=32.9

Q ss_pred             cccCCCEEEEEecC-H--HHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          161 NLLKGQTVGVIGAG-R--IGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       161 ~~l~g~tvgIiG~G-~--IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      ..+.||++.|.|.+ .  ||+++|+.|+ .-|++|++.+++.
T Consensus        27 ~~l~gk~~lVTGasg~~GIG~aia~~la-~~G~~V~~~~r~~   67 (293)
T 3grk_A           27 GLLQGKRGLILGVANNRSIAWGIAKAAR-EAGAELAFTYQGD   67 (293)
T ss_dssp             CTTTTCEEEEECCCSSSSHHHHHHHHHH-HTTCEEEEEECSH
T ss_pred             ccCCCCEEEEEcCCCCCcHHHHHHHHHH-HCCCEEEEEcCCH
Confidence            35899999999984 4  9999999985 7799999999874

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=94.56  E-value=0.052  Score=50.32  Aligned_cols=94  Identities=13%  Similarity=0.077  Sum_probs=59.4

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHH----Hh--hc
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VL--RE  236 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll--~~  236 (328)
                      .|+++.|+|. |.||+.+++.+ +.+|++|++.+++....  +....+       |..........++.+    +.  ..
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a-~~~G~~Vi~~~~~~~~~--~~~~~~-------ga~~~~d~~~~~~~~~~~~~~~~~~  235 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIA-KLFGARVIATAGSEDKL--RRAKAL-------GADETVNYTHPDWPKEVRRLTGGKG  235 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHH-HHTTCEEEEEESSHHHH--HHHHHH-------TCSEEEETTSTTHHHHHHHHTTTTC
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHH--HHHHhc-------CCCEEEcCCcccHHHHHHHHhCCCC
Confidence            5889999999 99999999985 78999999999876432  111112       211110111123322    22  25


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .|+|+.+.. . +    .-...++.|+++..++.++.
T Consensus       236 ~d~vi~~~g-~-~----~~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          236 ADKVVDHTG-A-L----YFEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             EEEEEESSC-S-S----SHHHHHHHEEEEEEEEESSC
T ss_pred             ceEEEECCC-H-H----HHHHHHHhhccCCEEEEEec
Confidence            799988876 2 2    23556677778878877753

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=94.55  E-value=0.045  Score=50.63  Aligned_cols=94  Identities=17%  Similarity=0.179  Sum_probs=60.1

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccc-cccCCHHHHhh-----c
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVLR-----E  236 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~-----~  236 (328)
                      .|+++.|+|. |.||+.+++.+ +.+|++|++.+++.... + ...      +.-|...... ....++.+.+.     .
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a-~~~G~~V~~~~~~~~~~-~-~~~------~~~g~~~~~d~~~~~~~~~~~~~~~~~~  225 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLA-KMMGCYVVGSAGSKEKV-D-LLK------TKFGFDDAFNYKEESDLTAALKRCFPNG  225 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-H-HHH------HTSCCSEEEETTSCSCSHHHHHHHCTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-H-HHH------HHcCCceEEecCCHHHHHHHHHHHhCCC
Confidence            5889999997 99999999985 78999999999876432 1 111      0112211111 11123444333     4


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .|+|+.+... +     .-...++.++++..++.++
T Consensus       226 ~d~vi~~~g~-~-----~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          226 IDIYFENVGG-K-----MLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             EEEEEESSCH-H-----HHHHHHTTEEEEEEEEECC
T ss_pred             CcEEEECCCH-H-----HHHHHHHHHhcCCEEEEEc
Confidence            7999988762 2     2356677888888888775

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=94.54  E-value=0.064  Score=49.23  Aligned_cols=105  Identities=18%  Similarity=0.091  Sum_probs=62.6

Q ss_pred             CEEEEEec-CHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--c-CCEE
Q 020301          166 QTVGVIGA-GRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--E-ADVI  240 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~-aDiV  240 (328)
                      .++.|+|. |++|+.+++.+ ...|++ |...+|....                 ....+...+.+++++..  . .|++
T Consensus        14 ~~vvV~Gasg~~G~~~~~~l-~~~g~~~v~~VnP~~~g-----------------~~i~G~~vy~sl~el~~~~~~~Dva   75 (297)
T 2yv2_A           14 TRVLVQGITGREGSFHAKAM-LEYGTKVVAGVTPGKGG-----------------SEVHGVPVYDSVKEALAEHPEINTS   75 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTT-----------------CEETTEEEESSHHHHHHHCTTCCEE
T ss_pred             CEEEEECCCCCHHHHHHHHH-HhCCCcEEEEeCCCCCC-----------------ceECCEeeeCCHHHHhhcCCCCCEE
Confidence            34777798 99999999987 456887 3355543210                 00112334578999987  5 9999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc-ccCHHHHHHHHHcCCcc
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-VIDEVALVEHLKQNPMF  292 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~-~vde~aL~~aL~~g~i~  292 (328)
                      ++++|. +.+...+ ++..++=.+.  +|..+-|- .-+++.|.++.++..+.
T Consensus        76 Ii~vp~-~~~~~~v-~ea~~~Gi~~--vVi~t~G~~~~~~~~l~~~A~~~gi~  124 (297)
T 2yv2_A           76 IVFVPA-PFAPDAV-YEAVDAGIRL--VVVITEGIPVHDTMRFVNYARQKGAT  124 (297)
T ss_dssp             EECCCG-GGHHHHH-HHHHHTTCSE--EEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             EEecCH-HHHHHHH-HHHHHCCCCE--EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            999993 3334433 3333322222  33444442 23456888888875553

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=94.51  E-value=3  Score=38.61  Aligned_cols=137  Identities=11%  Similarity=0.035  Sum_probs=86.9

Q ss_pred             HHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEE-----EecCHHHHH
Q 020301          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV-----IGAGRIGSA  179 (328)
Q Consensus       105 ~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgI-----iG~G~IG~~  179 (328)
                      ++--+|+|.|.-+....+.  .+++=++.+.+++         |    +       ..+. .+|++     +|=+++.++
T Consensus       131 A~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~---------g----~-------~~l~-l~ia~a~~~~vGD~rva~S  187 (324)
T 1js1_X          131 IQHSGRPVFSMEAATRHPL--QSFADLITIEEYK---------K----T-------ARPK-VVMTWAPHPRPLPQAVPNS  187 (324)
T ss_dssp             HHHSSSCEEESSCSSCCHH--HHHHHHHHHHHHC---------S----S-------SSCE-EEEECCCCSSCCCSHHHHH
T ss_pred             HhhCCCCEEECCCCCCCcH--HHHHHHHHHHHHc---------C----C-------CCee-EEEEEEcccccCCcchHHH
Confidence            3445799999666433333  2333334333321         1    0       1366 88999     999999999


Q ss_pred             HHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE-cCCCC-h---------
Q 020301          180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL-HPVLD-K---------  248 (328)
Q Consensus       180 vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l-~~plt-~---------  248 (328)
                      .+..+ ..||++|.+..|..-...+...              .......++++.+++||+|.. ..... .         
T Consensus       188 l~~~~-~~~G~~v~~~~P~~~~~~~~~~--------------~~~~~~~d~~eav~~aDvvy~~~w~s~g~~~~~~~~~r  252 (324)
T 1js1_X          188 FAEWM-NATDYEFVITHPEGYELDPKFV--------------GNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILST  252 (324)
T ss_dssp             HHHHH-HTSSSEEEEECCTTCCCCHHHH--------------TTCEEESCHHHHHTTCSEEEECCCCCCSTTCTTCCCCC
T ss_pred             HHHHH-HHCCCEEEEeCCcccCCChhhc--------------cceEEECCHHHHhCCCCEEEecCcccCCCccccchHHH
Confidence            99996 6899999999874321111100              012234789999999999977 32111 0         


Q ss_pred             hhhccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 020301          249 TTYHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (328)
Q Consensus       249 ~t~~li~~~~~~~mk~ga~lIN~a---RG~~vde~  280 (328)
                      ...-.++++.++++| +++|.-+.   ||.=|+.+
T Consensus       253 ~~~y~vt~e~l~~a~-~ai~MHcLP~~Rg~EI~~e  286 (324)
T 1js1_X          253 DRNWTVGDRQMAVTN-NAYFMHCLPVRRNMIVTDD  286 (324)
T ss_dssp             CTTSSBCHHHHTTSS-SCEEECCSCCCBTTTBCHH
T ss_pred             hcCcccCHHHHHhcC-CcEEECCCCCCCCcccCHH
Confidence            012457899999999 99998874   66666554

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=94.50  E-value=0.049  Score=50.60  Aligned_cols=93  Identities=16%  Similarity=0.239  Sum_probs=58.8

Q ss_pred             CCCEEEEE-ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-----cC
Q 020301          164 KGQTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (328)
Q Consensus       164 ~g~tvgIi-G~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  237 (328)
                      .|++|.|+ |.|.||...++.+ +.+|++|++.+++....  ++...+       |.... .....++.+.+.     ..
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla-~~~Ga~Vi~~~~~~~~~--~~~~~l-------Ga~~v-i~~~~~~~~~~~~~~~~g~  218 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIA-KAYGLRVITTASRNETI--EWTKKM-------GADIV-LNHKESLLNQFKTQGIELV  218 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEECCSHHHH--HHHHHH-------TCSEE-ECTTSCHHHHHHHHTCCCE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHH--HHHHhc-------CCcEE-EECCccHHHHHHHhCCCCc
Confidence            68999999 7999999999985 79999999999876432  122222       22111 111123333332     47


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      |+|+-++.. +.    .-...++.++++..+|.++
T Consensus       219 Dvv~d~~g~-~~----~~~~~~~~l~~~G~iv~~~  248 (346)
T 3fbg_A          219 DYVFCTFNT-DM----YYDDMIQLVKPRGHIATIV  248 (346)
T ss_dssp             EEEEESSCH-HH----HHHHHHHHEEEEEEEEESS
T ss_pred             cEEEECCCc-hH----HHHHHHHHhccCCEEEEEC
Confidence            999888762 11    1245567777777777664

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=94.45  E-value=0.047  Score=51.79  Aligned_cols=98  Identities=15%  Similarity=0.066  Sum_probs=59.3

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH-HHHhh------
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLR------  235 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~------  235 (328)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.+++....  ++.       ++-|.. .-.....++ .+.+.      
T Consensus       185 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~--~~a-------~~lGa~-~i~~~~~~~~~~~~~~~~~g~  253 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGA-RLLGAACVIVGDQNPERL--KLL-------SDAGFE-TIDLRNSAPLRDQIDQILGKP  253 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEEESCHHHH--HHH-------HTTTCE-EEETTSSSCHHHHHHHHHSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCHHHH--HHH-------HHcCCc-EEcCCCcchHHHHHHHHhCCC
Confidence            588999999999999999984 78999 999999876532  121       222321 111111222 22222      


Q ss_pred             cCCEEEEcCCCChh-----hhc----cccHHHHhcCCCCcEEEEcC
Q 020301          236 EADVISLHPVLDKT-----TYH----LINKERLATMKKEAILVNCS  272 (328)
Q Consensus       236 ~aDiV~l~~plt~~-----t~~----li~~~~~~~mk~ga~lIN~a  272 (328)
                      ..|+|+-++.....     ..+    -.-...++.++++..++.++
T Consensus       254 g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          254 EVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             CEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred             CCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence            58999999874310     000    01245567777777777654

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=94.44  E-value=0.074  Score=51.13  Aligned_cols=105  Identities=18%  Similarity=0.266  Sum_probs=66.5

Q ss_pred             cCCCEEEEEe-----cCH---HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh
Q 020301          163 LKGQTVGVIG-----AGR---IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (328)
Q Consensus       163 l~g~tvgIiG-----~G~---IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  234 (328)
                      +.|++|+|+|     +|.   +.++++..+ ..|||+|.+..|..-...++..+.-.+.++..|.   ......++++.+
T Consensus       186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l-~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~---~v~~~~d~~eav  261 (418)
T 2yfk_A          186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLM-TRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGG---NFTKTNSMAEAF  261 (418)
T ss_dssp             GTTCEEEEECCCCSSSCCCSHHHHHHHHHH-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSS---EEEEESCHHHHH
T ss_pred             cCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcCC---EEEEEcCHHHHh
Confidence            8899999998     454   999999986 6899999999885311011111100000111121   123347899999


Q ss_pred             hcCCEEEEcCCCC----------------h-------------h--hhccccHHHHhcCCC-CcEEEEc
Q 020301          235 READVISLHPVLD----------------K-------------T--TYHLINKERLATMKK-EAILVNC  271 (328)
Q Consensus       235 ~~aDiV~l~~plt----------------~-------------~--t~~li~~~~~~~mk~-ga~lIN~  271 (328)
                      +.||+|..-+=..                +             +  ..--++++.++.+|+ +++|.-+
T Consensus       262 ~~ADVVytd~W~sm~~Q~ER~~~~~~g~~~~~~~~~~~~~~~~~~~~~y~vt~elm~~ak~~dai~MHc  330 (418)
T 2yfk_A          262 KDADVVYPKSWAPFAAMEKRTELYGNGDQAGIDQLEQELLSQNKKHKDWECTEELMKTTKDGKALYMHC  330 (418)
T ss_dssp             TTCSEEEECCCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHGGGTTCCBCHHHHHTSGGGCCEECCC
T ss_pred             cCCCEEEEccccchhHHHHHhhhhccccchhhhhhhhhhhhHHHHHhhcCCCHHHHHhcCCCCeEEECC
Confidence            9999998743100                0             0  112468999999986 8888866

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=94.42  E-value=0.056  Score=50.49  Aligned_cols=30  Identities=27%  Similarity=0.444  Sum_probs=24.9

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  197 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~  197 (328)
                      +|||+|+|+||+.+.|.|... .++|.+.+.
T Consensus         2 kVgInG~G~IGr~vlr~l~~~-~~evvaind   31 (331)
T 2g82_O            2 KVGINGFGRIGRQVFRILHSR-GVEVALIND   31 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCEEEEEec
Confidence            799999999999999987545 888886543

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.41  E-value=0.37  Score=47.05  Aligned_cols=113  Identities=14%  Similarity=0.111  Sum_probs=71.0

Q ss_pred             ccCCCEEEEEecC----------HHHHHHHHHHHhcCCcEEEEEcCCchhHH--HHHHhhhhhhhhcCCCCCccccccCC
Q 020301          162 LLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASS  229 (328)
Q Consensus       162 ~l~g~tvgIiG~G----------~IG~~vA~~l~~~fg~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (328)
                      .+.|++|+|+|+-          +-...+++.| ...|++|.+|||......  ++....|+... .    ........+
T Consensus       332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L-~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~  405 (481)
T 2o3j_A          332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHL-MEEHAKLSVYDPKVQKSQMLNDLASVTSAQD-V----ERLITVESD  405 (481)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSSCHHHHHHHHHHHSCHHH-H----HHHEEEESS
T ss_pred             ccCCCeEEEEeeeeCCCCCccccChHHHHHHHH-HHCCCEEEEECCCCCchhhHHHHHhhhcccc-c----cCceeecCC
Confidence            4789999999973          5667899987 688999999999864321  11111010000 0    000112357


Q ss_pred             HHHHhhcCCEEEEcCCCChhhhccccHHH-HhcCCCCcEEEEcCCCcccCHHHHHH
Q 020301          230 MDEVLREADVISLHPVLDKTTYHLINKER-LATMKKEAILVNCSRGPVIDEVALVE  284 (328)
Q Consensus       230 l~ell~~aDiV~l~~plt~~t~~li~~~~-~~~mk~ga~lIN~aRG~~vde~aL~~  284 (328)
                      +++.++.||.|+++..- ++.+. ++-+. .+.|+...+++++ |+ ++|.+.+.+
T Consensus       406 ~~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~~~  457 (481)
T 2o3j_A          406 PYAAARGAHAIVVLTEW-DEFVE-LNYSQIHNDMQHPAAIFDG-RL-ILDQKALRE  457 (481)
T ss_dssp             HHHHHTTCSEEEECSCC-GGGTT-SCHHHHHHHSCSSCEEEES-SS-CSCHHHHHH
T ss_pred             HHHHHcCCCEEEEcCCc-HHhhc-cCHHHHHHhcCCCCEEEEC-CC-CCCHHHHHh
Confidence            78899999999999873 44444 45444 4567776688887 54 567665443

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=94.39  E-value=0.12  Score=50.16  Aligned_cols=118  Identities=17%  Similarity=0.139  Sum_probs=63.1

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhh-hhh-hhhcC--C---C----CCccccccCCHHHH
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTA-YGQ-FLKAN--G---E----QPVTWKRASSMDEV  233 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~-~~~-~~~~~--~---~----~~~~~~~~~~l~el  233 (328)
                      -++||||+|.||+.+++.+.+.-+++|. ++|+++... ++..+. |+. |....  .   .    .......+.+++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era-~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeL  102 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNT-FKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLI  102 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHH-HHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHH-HHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHH
Confidence            3799999999999999886444478755 567776432 222111 120 00000  0   0    00011235799999


Q ss_pred             hh--cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEE--EcCCCcccCHHHHHHHHHcC
Q 020301          234 LR--EADVISLHPVLDKTTYHLINKERLATMKKEAILV--NCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       234 l~--~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lI--N~aRG~~vde~aL~~aL~~g  289 (328)
                      ++  ..|+|+++.|. ++...   +-.+..|+.|.-++  |.+- ...+-+.|.++-++.
T Consensus       103 L~d~dIDaVviaTp~-p~~H~---e~a~~AL~AGKHVv~~nk~l-~~~eg~eL~~~A~e~  157 (446)
T 3upl_A          103 LSNPLIDVIIDATGI-PEVGA---ETGIAAIRNGKHLVMMNVEA-DVTIGPYLKAQADKQ  157 (446)
T ss_dssp             HTCTTCCEEEECSCC-HHHHH---HHHHHHHHTTCEEEECCHHH-HHHHHHHHHHHHHHH
T ss_pred             hcCCCCCEEEEcCCC-hHHHH---HHHHHHHHcCCcEEecCccc-CHHHHHHHHHHHHHh
Confidence            98  48999999984 33222   22333444555555  4310 112234666655553

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=94.38  E-value=0.085  Score=48.59  Aligned_cols=79  Identities=20%  Similarity=0.161  Sum_probs=47.3

Q ss_pred             cCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh--HHHHHHhhhhhhhhcCCCCCcc--ccccCCHHHHhh--
Q 020301          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLR--  235 (328)
Q Consensus       163 l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~--  235 (328)
                      +..++|.|.|. |.||+.+++.|+ .-|.+|++.+|....  ........    ....+.....  .....++.++++  
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~-~~g~~V~~l~R~~~~~~~~~~~~~~----l~~~~v~~~~~Dl~d~~~l~~~~~~~   82 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASL-DAHRPTYILARPGPRSPSKAKIFKA----LEDKGAIIVYGLINEQEAMEKILKEH   82 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHH-HTTCCEEEEECSSCCCHHHHHHHHH----HHHTTCEEEECCTTCHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHH-HCCCCEEEEECCCCCChhHHHHHHH----HHhCCcEEEEeecCCHHHHHHHHhhC
Confidence            44678999998 999999999974 668999999987621  11111111    1111211111  111235677888  


Q ss_pred             cCCEEEEcCCC
Q 020301          236 EADVISLHPVL  246 (328)
Q Consensus       236 ~aDiV~l~~pl  246 (328)
                      ++|+|+.+...
T Consensus        83 ~~d~Vi~~a~~   93 (346)
T 3i6i_A           83 EIDIVVSTVGG   93 (346)
T ss_dssp             TCCEEEECCCG
T ss_pred             CCCEEEECCch
Confidence            89998877763

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=94.35  E-value=0.055  Score=50.78  Aligned_cols=95  Identities=14%  Similarity=0.131  Sum_probs=58.6

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch------------------hHHHHHHhhhhhhhhcCC-CC
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANG-EQ  220 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~-~~  220 (328)
                      ..|.+++|.|||+|.+|.++|+.|+ ..|. ++..+|...-                  .+.+...+    .+.+-. ..
T Consensus        32 ~~L~~~~VlivG~GGlG~~ia~~La-~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~----~l~~lnp~v  106 (346)
T 1y8q_A           32 KRLRASRVLLVGLKGLGAEIAKNLI-LAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLE----RAQNLNPMV  106 (346)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHH----HHHHTCTTS
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHH----HHHhHCCCe
Confidence            4689999999999999999999985 5576 7888876421                  01111101    111100 00


Q ss_pred             Cccccc---cCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhc
Q 020301          221 PVTWKR---ASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (328)
Q Consensus       221 ~~~~~~---~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~  261 (328)
                      ......   ....+++++++|+|+.+. .+.+++..+|+...+.
T Consensus       107 ~v~~~~~~~~~~~~~~~~~~dvVv~~~-d~~~~r~~ln~~~~~~  149 (346)
T 1y8q_A          107 DVKVDTEDIEKKPESFFTQFDAVCLTC-CSRDVIVKVDQICHKN  149 (346)
T ss_dssp             EEEEECSCGGGCCHHHHTTCSEEEEES-CCHHHHHHHHHHHHHT
T ss_pred             EEEEEecccCcchHHHhcCCCEEEEcC-CCHHHHHHHHHHHHHc
Confidence            000000   012468899999998875 4778888888776653

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.33  E-value=0.16  Score=45.36  Aligned_cols=37  Identities=19%  Similarity=0.271  Sum_probs=32.6

Q ss_pred             cccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCC
Q 020301          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (328)
Q Consensus       161 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~  198 (328)
                      ..+.||++.|.|. |-||+++|+.|+ .-|++|++.|++
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~~~   43 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLA-EEGADIILFDIC   43 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECC
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHH-HCCCeEEEEccc
Confidence            3689999999997 579999999985 779999999886

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=94.21  E-value=0.046  Score=48.77  Aligned_cols=39  Identities=23%  Similarity=0.258  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEe---cCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          162 LLKGQTVGVIG---AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       162 ~l~g~tvgIiG---~G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .+.||++.|.|   -|-||+++|+.|+ ..|++|+..+++...
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l~-~~G~~V~~~~r~~~~   45 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVAQ-EQGAQLVLTGFDRLR   45 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHH-HTTCEEEEEECSCHH
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHHH-HCCCEEEEEecChHH
Confidence            47899999999   4899999999985 779999999987654

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=94.20  E-value=0.071  Score=49.28  Aligned_cols=88  Identities=10%  Similarity=0.130  Sum_probs=54.8

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC---HHHH-hhcCCEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVI  240 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDiV  240 (328)
                      .+++.|+|+|++|+.+|+.| ...|. |++.|++++.. + .        ++.+.... .....+   |+++ +++||.|
T Consensus       115 ~~~viI~G~G~~g~~l~~~L-~~~g~-v~vid~~~~~~-~-~--------~~~~~~~i-~gd~~~~~~L~~a~i~~a~~v  181 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLREL-RGSEV-FVLAEDENVRK-K-V--------LRSGANFV-HGDPTRVSDLEKANVRGARAV  181 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTG-GGSCE-EEEESCGGGHH-H-H--------HHTTCEEE-ESCTTSHHHHHHTCSTTEEEE
T ss_pred             cCCEEEECCcHHHHHHHHHH-HhCCc-EEEEeCChhhh-h-H--------HhCCcEEE-EeCCCCHHHHHhcChhhccEE
Confidence            56899999999999999997 67888 99999887532 1 1        11121111 111122   3444 7789999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcE
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAI  267 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~  267 (328)
                      +++.+..  ..++.-....+.+.+...
T Consensus       182 i~~~~~d--~~n~~~~~~ar~~~~~~~  206 (336)
T 1lnq_A          182 IVDLESD--SETIHCILGIRKIDESVR  206 (336)
T ss_dssp             EECCSSH--HHHHHHHHHHHTTCTTSE
T ss_pred             EEcCCcc--HHHHHHHHHHHHHCCCCe
Confidence            9998743  334444455566666533

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=94.12  E-value=0.08  Score=49.35  Aligned_cols=94  Identities=10%  Similarity=-0.020  Sum_probs=60.7

Q ss_pred             CCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHH-HHh-----hc
Q 020301          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD-EVL-----RE  236 (328)
Q Consensus       164 ~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-ell-----~~  236 (328)
                      .|+++.|+| .|.||..+++.+ +..|++|++.+++.... + ....+       |..........++. ++.     ..
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~-~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~  231 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLT-RMAGAIPLVTAGSQKKL-Q-MAEKL-------GAAAGFNYKKEDFSEATLKFTKGAG  231 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESCHHHH-H-HHHHH-------TCSEEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCccHHHHHHHHHH-HHcCCEEEEEeCCHHHH-H-HHHHc-------CCcEEEecCChHHHHHHHHHhcCCC
Confidence            588999999 799999999986 78999999999876432 1 11222       21111011112222 222     14


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .|+++.+... +     .-...++.|+++..++.++-
T Consensus       232 ~d~vi~~~G~-~-----~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          232 VNLILDCIGG-S-----YWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             EEEEEESSCG-G-----GHHHHHHHEEEEEEEEECCC
T ss_pred             ceEEEECCCc-h-----HHHHHHHhccCCCEEEEEec
Confidence            7999988762 1     12456788999999998864

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=94.07  E-value=0.087  Score=49.30  Aligned_cols=100  Identities=15%  Similarity=0.169  Sum_probs=54.2

Q ss_pred             CEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCc---hhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       166 ~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      .+++|+| .|.+|+++.++|...=++++.....+.   .. -....+.|. +.+  +..........+.+++++++|+|+
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~sa-Gk~~~~~~p-~~~--~~~~~~v~~~~~~~~~~~~~Dvvf   80 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDA-GKLISDLHP-QLK--GIVELPLQPMSDISEFSPGVDVVF   80 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTT-TSBHHHHCG-GGT--TTCCCBEEEESSGGGTCTTCSEEE
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhc-CCchHHhCc-ccc--CccceeEeccCCHHHHhcCCCEEE
Confidence            4799999 699999999997543466776654332   11 000111111 011  111111111004455558999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      +|+|.. .++.+. ...   .+.|+.+|+.|--
T Consensus        81 ~a~p~~-~s~~~~-~~~---~~~g~~vIDlSa~  108 (337)
T 3dr3_A           81 LATAHE-VSHDLA-PQF---LEAGCVVFDLSGA  108 (337)
T ss_dssp             ECSCHH-HHHHHH-HHH---HHTTCEEEECSST
T ss_pred             ECCChH-HHHHHH-HHH---HHCCCEEEEcCCc
Confidence            999921 122211 222   3579999999754

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=94.01  E-value=0.075  Score=48.96  Aligned_cols=93  Identities=13%  Similarity=0.097  Sum_probs=58.2

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHH----HHh--hc
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD----EVL--RE  236 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----ell--~~  236 (328)
                      .|+++.|+|. |.||+.+++.+ +..|++|++.+++.... + ....+       +..........++.    ++.  ..
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a-~~~G~~Vi~~~~~~~~~-~-~~~~~-------g~~~~~d~~~~~~~~~i~~~~~~~~  214 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWA-RHLGATVIGTVSTEEKA-E-TARKL-------GCHHTINYSTQDFAEVVREITGGKG  214 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHH-HHTTCEEEEEESSHHHH-H-HHHHH-------TCSEEEETTTSCHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCccHHHHHHHHHH-HHCCCEEEEEeCCHHHH-H-HHHHc-------CCCEEEECCCHHHHHHHHHHhCCCC
Confidence            4789999995 99999999986 78999999999876432 1 11112       21111000112222    222  24


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .|+++.+...  +    .-+..++.++++..+|.++
T Consensus       215 ~d~vi~~~g~--~----~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          215 VDVVYDSIGK--D----TLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             EEEEEECSCT--T----THHHHHHTEEEEEEEEECC
T ss_pred             CeEEEECCcH--H----HHHHHHHhhccCCEEEEEe
Confidence            7999988763  1    2356677778877777765

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=94.00  E-value=0.14  Score=46.04  Aligned_cols=38  Identities=18%  Similarity=0.181  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~---G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .+.||++.|.|.   |-||+++|+.|+ .-|++|++.+++..
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l~-~~G~~V~~~~r~~~   58 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSFH-REGAQLAFTYATPK   58 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence            488999999998   589999999985 67999999998763

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=93.97  E-value=0.15  Score=49.96  Aligned_cols=115  Identities=17%  Similarity=0.231  Sum_probs=67.0

Q ss_pred             EEEEEecCHHHHHH--HHHHH--hcC---CcEEEEEcCCchhHHHH--HHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301          167 TVGVIGAGRIGSAY--ARMMV--EGF---KMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (328)
Q Consensus       167 tvgIiG~G~IG~~v--A~~l~--~~f---g~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (328)
                      +|+|||.|++|...  ..-++  ..+   +.+|..+|.........  ....+   ....+ .+......++.++.++.|
T Consensus         2 KI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~---~~~~~-~~~~i~~t~d~~eAl~gA   77 (477)
T 3u95_A            2 KISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKY---VEELN-SPVKVVKTESLDEAIEGA   77 (477)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHH---HHHHT-CCCEEEEESCHHHHHTTC
T ss_pred             EEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHH---HHHcC-CCeEEEEeCCHHHHhCCC
Confidence            69999999998552  11112  123   45899999986432111  11111   11112 122333457899999999


Q ss_pred             CEEEEcCCC---------------------Ch-hhhcccc-------------------------HHHHhcCCCCcEEEE
Q 020301          238 DVISLHPVL---------------------DK-TTYHLIN-------------------------KERLATMKKEAILVN  270 (328)
Q Consensus       238 DiV~l~~pl---------------------t~-~t~~li~-------------------------~~~~~~mk~ga~lIN  270 (328)
                      |||+++.-.                     .+ .+++++.                         .+.++...|+|++||
T Consensus        78 D~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P~A~~in  157 (477)
T 3u95_A           78 DFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAPKAYLMQ  157 (477)
T ss_dssp             SEEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             CEEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCCCeEEEE
Confidence            999998621                     00 0111111                         123334459999999


Q ss_pred             cCCCcccCHHHHHHH
Q 020301          271 CSRGPVIDEVALVEH  285 (328)
Q Consensus       271 ~aRG~~vde~aL~~a  285 (328)
                      .+-.--+-..++.+.
T Consensus       158 ~tNP~~i~t~a~~~~  172 (477)
T 3u95_A          158 TANPVFEITQAVRRW  172 (477)
T ss_dssp             CSSCHHHHHHHHHHH
T ss_pred             ecChHHHHHHHHHHh
Confidence            998877777788765

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=93.90  E-value=0.061  Score=49.01  Aligned_cols=36  Identities=17%  Similarity=0.243  Sum_probs=31.2

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .|+++.|.|. |-||+.+++.|+ .-|.+|++.+|+..
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~-~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLL-EKGYEVYGADRRSG   38 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEECSCCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEECCCc
Confidence            5789999997 999999999984 67999999998764

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=93.89  E-value=0.27  Score=46.18  Aligned_cols=101  Identities=13%  Similarity=0.163  Sum_probs=59.1

Q ss_pred             CCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      +-.+||||| .|.+|+++.++|..-=..++.........- ..+.+.|. +.+    ....... .+.++++.++|++++
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG-~~~~~~~p-~~~----~~l~~~~-~~~~~~~~~~Dvvf~   84 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAG-KKLEEIFP-STL----ENSILSE-FDPEKVSKNCDVLFT   84 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTT-SBHHHHCG-GGC----CCCBCBC-CCHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCccccc-CChHHhCh-hhc----cCceEEe-CCHHHhhcCCCEEEE
Confidence            345799997 699999999998533346766654322110 11111121 111    1111211 356676689999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vd  278 (328)
                      |+|..      ..++....+ .|+.+|+.|.--=.+
T Consensus        85 alp~~------~s~~~~~~~-~g~~VIDlSsdfRl~  113 (351)
T 1vkn_A           85 ALPAG------ASYDLVREL-KGVKIIDLGADFRFD  113 (351)
T ss_dssp             CCSTT------HHHHHHTTC-CSCEEEESSSTTTCS
T ss_pred             CCCcH------HHHHHHHHh-CCCEEEECChhhhCC
Confidence            99943      234445555 799999998543333

>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}

Probab=93.89  E-value=0.53  Score=44.93  Aligned_cols=106  Identities=20%  Similarity=0.321  Sum_probs=65.2

Q ss_pred             ccCCCEEEEEec-----C---HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH
Q 020301          162 LLKGQTVGVIGA-----G---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (328)
Q Consensus       162 ~l~g~tvgIiG~-----G---~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (328)
                      .|.|++|+|+|-     |   ++..+.+..+ ..||++|.+..|..-...++..+...+.++..|.   ......++++.
T Consensus       188 ~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~-~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~---~i~~~~d~~ea  263 (399)
T 3q98_A          188 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGG---SFRQVTSMEEA  263 (399)
T ss_dssp             GGTTCEEEEECCCCSSCCCCTHHHHHHHHHH-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTC---EEEEESCHHHH
T ss_pred             ccCCCEEEEEEecccccCcchHHHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCC---EEEEEcCHHHH
Confidence            488999999983     5   7889999886 6899999999875211111111100000111121   12234799999


Q ss_pred             hhcCCEEEEcC--CCCh-------------------h----------hhccccHHHHhcCC-CCcEEEEc
Q 020301          234 LREADVISLHP--VLDK-------------------T----------TYHLINKERLATMK-KEAILVNC  271 (328)
Q Consensus       234 l~~aDiV~l~~--plt~-------------------~----------t~~li~~~~~~~mk-~ga~lIN~  271 (328)
                      ++.||+|..-+  +...                   +          ...-+|.+.++.++ ++++|.=+
T Consensus       264 v~~aDvVytd~W~Smg~~~er~~~~~~~~~~~~~~~e~~~~~r~~~~~~yqVn~elm~~a~~~daifMHc  333 (399)
T 3q98_A          264 FKDADIVYPKSWAPYKVMEERTELLRANDHEGLKALEKQCLAQNAQHKDWHCTEEMMELTRDGEALYMHC  333 (399)
T ss_dssp             HTTCSEEEECCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTTCCBCHHHHHTSGGGCCEECCC
T ss_pred             hCCCCEEEecCccccchhhhhhhhccccchhhhhhhhhhhhHHHHHccCcEECHHHHhhcCCCCcEEECC
Confidence            99999997643  1000                   0          01337899999887 47888755

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=93.86  E-value=0.085  Score=49.08  Aligned_cols=92  Identities=17%  Similarity=0.159  Sum_probs=58.0

Q ss_pred             CEEEEEec-CHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-----cCC
Q 020301          166 QTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD  238 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~aD  238 (328)
                      +++.|.|. |.||+.+++.+ +..|+ +|++.+++.... +...+.+       |..........++.+.+.     ..|
T Consensus       162 ~~vlI~GasggiG~~~~~~a-~~~Ga~~Vi~~~~~~~~~-~~~~~~~-------g~~~~~d~~~~~~~~~~~~~~~~~~d  232 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIG-HFLGCSRVVGICGTHEKC-ILLTSEL-------GFDAAINYKKDNVAEQLRESCPAGVD  232 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHH-HHTTCSEEEEEESCHHHH-HHHHHTS-------CCSEEEETTTSCHHHHHHHHCTTCEE
T ss_pred             cEEEEECCCcHHHHHHHHHH-HHCCCCeEEEEeCCHHHH-HHHHHHc-------CCceEEecCchHHHHHHHHhcCCCCC
Confidence            89999998 99999999985 78999 999999875432 1111111       221111111123333332     479


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      +++.+...  +    .-...++.++++..+|.++
T Consensus       233 ~vi~~~G~--~----~~~~~~~~l~~~G~iv~~G  260 (357)
T 2zb4_A          233 VYFDNVGG--N----ISDTVISQMNENSHIILCG  260 (357)
T ss_dssp             EEEESCCH--H----HHHHHHHTEEEEEEEEECC
T ss_pred             EEEECCCH--H----HHHHHHHHhccCcEEEEEC
Confidence            99888761  1    2356677788888888765

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=93.83  E-value=0.067  Score=49.95  Aligned_cols=101  Identities=13%  Similarity=0.142  Sum_probs=57.0

Q ss_pred             EEEEEecCHHHHHHHHHHHhcC---------CcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc
Q 020301          167 TVGVIGAGRIGSAYARMMVEGF---------KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~f---------g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (328)
                      ++||||+|.||+.+++.+. ..         +++|. ++|++....              .+. +. ...+.++++++ .
T Consensus         5 rvgIiG~G~VG~~~~~~l~-~~~~~l~~~g~~~~lvaV~d~~~~~~--------------~~~-~~-~~~~~d~~~ll-~   66 (332)
T 2ejw_A            5 KIALLGGGTVGSAFYNLVL-ERAEELSAFGVVPRFLGVLVRDPRKP--------------RAI-PQ-ELLRAEPFDLL-E   66 (332)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HTGGGGGGGTEEEEEEEEECSCTTSC--------------CSS-CG-GGEESSCCCCT-T
T ss_pred             EEEEEcCCHHHHHHHHHHH-hChhhHhhcCCCEEEEEEEECCHHHh--------------hcc-Cc-ccccCCHHHHh-C
Confidence            6999999999999999863 33         46664 556654220              011 11 11245788888 9


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQN  289 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~aL~~g  289 (328)
                      .|+|+.|.|....... +   ..+.++.|.-+|...-..+ -.-+.|.++-++.
T Consensus        67 iDvVve~t~~~~~a~~-~---~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           67 ADLVVEAMGGVEAPLR-L---VLPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             CSEEEECCCCSHHHHH-H---HHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             CCEEEECCCCcHHHHH-H---HHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence            9999999884421111 1   1223344444444221222 2445666665554

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=93.80  E-value=0.061  Score=51.29  Aligned_cols=41  Identities=22%  Similarity=0.516  Sum_probs=33.0

Q ss_pred             ccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       158 ~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      +.+..+.+++|+|+|-|..|+.+++.+ +.+|.+|+++| +..
T Consensus        17 ~~~~mm~~~~I~ilGgG~lg~~l~~aa-~~lG~~v~~~d-~~~   57 (403)
T 3k5i_A           17 FQGHMWNSRKVGVLGGGQLGRMLVESA-NRLNIQVNVLD-ADN   57 (403)
T ss_dssp             ----CCSCCEEEEECCSHHHHHHHHHH-HHHTCEEEEEE-STT
T ss_pred             EeccCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEE-CCC
Confidence            345557799999999999999999995 78999999999 643

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=93.79  E-value=0.26  Score=46.11  Aligned_cols=94  Identities=14%  Similarity=0.007  Sum_probs=58.3

Q ss_pred             cCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-----c
Q 020301          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----E  236 (328)
Q Consensus       163 l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  236 (328)
                      -.|.+|.|+|. |.+|...++.+ +.+|++|++.. +..+  .++...+       |....-.....++.+.+.     .
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla-~~~Ga~Vi~~~-~~~~--~~~~~~l-------Ga~~vi~~~~~~~~~~v~~~t~g~  231 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQML-RLSGYIPIATC-SPHN--FDLAKSR-------GAEEVFDYRAPNLAQTIRTYTKNN  231 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEE-CGGG--HHHHHHT-------TCSEEEETTSTTHHHHHHHHTTTC
T ss_pred             CCCcEEEEECCCcHHHHHHHHHH-HHCCCEEEEEe-CHHH--HHHHHHc-------CCcEEEECCCchHHHHHHHHccCC
Confidence            46899999999 89999999985 89999998875 3322  1222222       322111111234433332     3


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcC-CCCcEEEEcC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATM-KKEAILVNCS  272 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~m-k~ga~lIN~a  272 (328)
                      .|+++-++.. +++    -...++.+ +++..++.++
T Consensus       232 ~d~v~d~~g~-~~~----~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          232 LRYALDCITN-VES----TTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             CCEEEESSCS-HHH----HHHHHHHSCTTCEEEEESS
T ss_pred             ccEEEECCCc-hHH----HHHHHHHhhcCCCEEEEEe
Confidence            8999988773 222    23456667 5788888776

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=93.75  E-value=0.045  Score=48.44  Aligned_cols=37  Identities=19%  Similarity=0.076  Sum_probs=31.9

Q ss_pred             cccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCC
Q 020301          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (328)
Q Consensus       161 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~  198 (328)
                      ..+.|+++.|.|. |.||+.+|+.|+ .-|++|++.++.
T Consensus        17 ~~~~~k~vlItGasggiG~~la~~l~-~~G~~v~~~~r~   54 (274)
T 1ja9_A           17 KPLAGKVALTTGAGRGIGRGIAIELG-RRGASVVVNYGS   54 (274)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEcCC
Confidence            3588999999985 799999999985 679999999884

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=93.75  E-value=0.11  Score=48.29  Aligned_cols=94  Identities=16%  Similarity=0.223  Sum_probs=59.4

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHH-H---hh--c
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-V---LR--E  236 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-l---l~--~  236 (328)
                      .|+++.|.|. |.||..+++.+ +..|++|++.+++.....  ....+       |..........++.+ +   ..  .
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a-~~~Ga~Vi~~~~~~~~~~--~~~~~-------ga~~~~d~~~~~~~~~~~~~~~~~~  239 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIA-RAYGLKILGTAGTEEGQK--IVLQN-------GAHEVFNHREVNYIDKIKKYVGEKG  239 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHHHHH--HHHHT-------TCSEEEETTSTTHHHHHHHHHCTTC
T ss_pred             CcCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCChhHHH--HHHHc-------CCCEEEeCCCchHHHHHHHHcCCCC
Confidence            4889999998 99999999985 789999999998764321  11111       221111111122222 2   22  5


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .|+|+.+...  .+   + ...++.++++..++.++.
T Consensus       240 ~D~vi~~~G~--~~---~-~~~~~~l~~~G~iv~~g~  270 (351)
T 1yb5_A          240 IDIIIEMLAN--VN---L-SKDLSLLSHGGRVIVVGS  270 (351)
T ss_dssp             EEEEEESCHH--HH---H-HHHHHHEEEEEEEEECCC
T ss_pred             cEEEEECCCh--HH---H-HHHHHhccCCCEEEEEec
Confidence            7999888652  11   2 456788888888887763

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=93.73  E-value=0.052  Score=48.19  Aligned_cols=39  Identities=18%  Similarity=0.110  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          161 NLLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       161 ~~l~g~tvgIiG~---G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ..+.||++.|.|.   |-||+++|+.|+ .-|++|++.+++..
T Consensus         4 ~~l~~k~vlVTGas~~~gIG~~ia~~l~-~~G~~V~~~~r~~~   45 (261)
T 2wyu_A            4 VDLSGKKALVMGVTNQRSLGFAIAAKLK-EAGAEVALSYQAER   45 (261)
T ss_dssp             ECCTTCEEEEESCCSSSSHHHHHHHHHH-HHTCEEEEEESCGG
T ss_pred             cCCCCCEEEEECCCCCCcHHHHHHHHHH-HCCCEEEEEcCCHH
Confidence            3578999999998   589999999985 56999999998763

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=93.68  E-value=0.13  Score=49.87  Aligned_cols=107  Identities=13%  Similarity=0.160  Sum_probs=61.4

Q ss_pred             CEEEEEecCHHHHHHHHHHHh---------cCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh
Q 020301          166 QTVGVIGAGRIGSAYARMMVE---------GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~---------~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (328)
                      -++||||+|.||+.+++.+.+         +.+.+|. ++|++.... ....         .+     ...+.++++++.
T Consensus        11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~-~~~~---------~~-----~~~~~d~~ell~   75 (444)
T 3mtj_A           11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKA-EALA---------GG-----LPLTTNPFDVVD   75 (444)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHH-HHHH---------TT-----CCEESCTHHHHT
T ss_pred             ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHh-hhhc---------cc-----CcccCCHHHHhc
Confidence            479999999999999876531         3567765 456665321 1110         01     123468999997


Q ss_pred             --cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCc
Q 020301          236 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM  291 (328)
Q Consensus       236 --~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~v-de~aL~~aL~~g~i  291 (328)
                        +.|+|+.++|.+.....+    ....++.|.-++..-=+... +-+.|.++.++...
T Consensus        76 d~diDvVve~tp~~~~h~~~----~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv  130 (444)
T 3mtj_A           76 DPEIDIVVELIGGLEPAREL----VMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGV  130 (444)
T ss_dssp             CTTCCEEEECCCSSTTHHHH----HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEcCCCchHHHHH----HHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCC
Confidence              479999999853221221    23444555555543222222 23567776665433

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=93.64  E-value=0.13  Score=47.77  Aligned_cols=95  Identities=15%  Similarity=0.143  Sum_probs=59.2

Q ss_pred             CCCEEEEEecC-HHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC----HHHHh--h
Q 020301          164 KGQTVGVIGAG-RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS----MDEVL--R  235 (328)
Q Consensus       164 ~g~tvgIiG~G-~IG~~vA~~l~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~ell--~  235 (328)
                      .|+++.|+|.| .||..+++.+ +.. |++|++.+++....  +....+       |..........+    +.++.  .
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a-~~~~Ga~Vi~~~~~~~~~--~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~  239 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIA-KAVSGATIIGVDVREEAV--EAAKRA-------GADYVINASMQDPLAEIRRITESK  239 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHHTCCEEEEEESSHHHH--HHHHHH-------TCSEEEETTTSCHHHHHHHHTTTS
T ss_pred             CCCEEEEECCCccHHHHHHHHH-HHcCCCeEEEEcCCHHHH--HHHHHh-------CCCEEecCCCccHHHHHHHHhcCC
Confidence            47899999999 9999999986 677 99999999876432  111122       211110001112    23333  3


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      ..|+|+.+... +.+    -+..++.++++..++.++.
T Consensus       240 ~~d~vi~~~g~-~~~----~~~~~~~l~~~G~iv~~g~  272 (347)
T 1jvb_A          240 GVDAVIDLNNS-EKT----LSVYPKALAKQGKYVMVGL  272 (347)
T ss_dssp             CEEEEEESCCC-HHH----HTTGGGGEEEEEEEEECCS
T ss_pred             CceEEEECCCC-HHH----HHHHHHHHhcCCEEEEECC
Confidence            57999888763 211    1344567788888888764

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=93.63  E-value=0.065  Score=47.57  Aligned_cols=37  Identities=22%  Similarity=0.193  Sum_probs=32.4

Q ss_pred             ccCCCEEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       162 ~l~g~tvgIiG~---G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      .+.||++.|.|.   |-||+++|+.|+ .-|++|+..+|+.
T Consensus         6 ~l~~k~vlVTGas~~~gIG~~ia~~l~-~~G~~V~~~~r~~   45 (265)
T 1qsg_A            6 FLSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQND   45 (265)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHH-HTTCEEEEEESST
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHH-HCCCEEEEEcCcH
Confidence            378999999997   589999999985 6799999999875

>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*

Probab=93.62  E-value=2.9  Score=39.15  Aligned_cols=149  Identities=13%  Similarity=0.164  Sum_probs=84.9

Q ss_pred             HHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEec-------CHH
Q 020301          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-------GRI  176 (328)
Q Consensus       104 ~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~-------G~I  176 (328)
                      .++-..|+|.|. |....+.  .+++=++.+.+++         |           ..++.|++++++|.       .++
T Consensus       152 ~a~~~~vPVIN~-g~~~HPt--QaL~Dl~Ti~e~~---------G-----------~~dl~g~kv~~~~~~~gd~~~~~V  208 (359)
T 3kzn_A          152 FAKYSPVPVINM-ETITHPC--QELAHALALQEHF---------G-----------TPDLRGKKYVLTWTYHPKPLNTAV  208 (359)
T ss_dssp             HHHHCSSCEEES-SSSCCHH--HHHHHHHHHHHHH---------T-----------SSCCTTCEEEEEECCCSSCCCSHH
T ss_pred             HHHhCCCcccCc-ccccCch--HHHHHHHHHHHHc---------C-----------CccccCCeEEEEEeecCCccccch
Confidence            345568999995 5443332  2333333333322         1           13688999999986       368


Q ss_pred             HHHHHHHHHhcCCcEEEEEcCCchhH-HHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCCh-------
Q 020301          177 GSAYARMMVEGFKMNLIYYDLYQATR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK-------  248 (328)
Q Consensus       177 G~~vA~~l~~~fg~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~-------  248 (328)
                      .++....+ ..||++|.+.-|.+.-. .++..+.....+...|   .......++++.++.||+|..-.=-..       
T Consensus       209 a~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g---~~i~~~~d~~eav~~aDvvyt~r~q~~r~~~~~~  284 (359)
T 3kzn_A          209 ANSALTIA-TRMGMDVTLLCPTPDYILDERYMDWAAQNVAESG---GSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWE  284 (359)
T ss_dssp             HHHHHHHH-HHTTCEEEEECSSGGGCCCHHHHHHHHHHHHHHS---CEEEEECCHHHHHTTCSEEEEECCCCGGGTTCCT
T ss_pred             hhhhHHHH-HhccccEEEEecccccCCCHHHHHHHHHHHHhhC---CCcccccCHHHHhcCCeEEEEEEEEEeecccchh
Confidence            88888886 68999999998853211 1111111001111112   122335689999999999975432211       


Q ss_pred             -h--h-----hccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 020301          249 -T--T-----YHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (328)
Q Consensus       249 -~--t-----~~li~~~~~~~mk~ga~lIN~a---RG~~vde~  280 (328)
                       +  .     ...++++.++ ++++++|.-+.   ||.=|+.+
T Consensus       285 ~~~~~~~~~~~y~v~~~l~~-~~~~ai~MHplP~~Rg~EI~~e  326 (359)
T 3kzn_A          285 PEKPIRDQYQHFIVDERKMA-LTNNGVFSHCLPLRRNVKATDA  326 (359)
T ss_dssp             THHHHHGGGGGGSBCHHHHH-TSSSCEEECCSCCCBTTTBCHH
T ss_pred             hhHHHHHHHhccChHHHHhc-CCCCCEEECCCCCCCCCCcCHH
Confidence             0  0     1135666665 56788887664   77655544

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=93.52  E-value=0.11  Score=46.06  Aligned_cols=37  Identities=24%  Similarity=0.202  Sum_probs=30.8

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEE-cCCc
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYY-DLYQ  199 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~-d~~~  199 (328)
                      ++.||++.|.|. |-||+++|+.|+ .-|++|++. ++..
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la-~~G~~V~~~~~~~~   43 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFA-QEGANVVLTYNGAA   43 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECSSC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCCH
Confidence            588999999996 579999999985 679999988 4443

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=93.51  E-value=0.056  Score=48.31  Aligned_cols=68  Identities=12%  Similarity=0.172  Sum_probs=45.5

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCc--cccccCCHHHHhhc-CCEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLRE-ADVI  240 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~-aDiV  240 (328)
                      .+++|.|.|.|.||+.+++.|+ .-|.+|++.+|+.....             .+....  ......+++++++. +|+|
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~-------------~~~~~~~~Dl~d~~~~~~~~~~~~d~v   67 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLT-AQGHEVTGLRRSAQPMP-------------AGVQTLIADVTRPDTLASIVHLRPEIL   67 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHH-HTTCCEEEEECTTSCCC-------------TTCCEEECCTTCGGGCTTGGGGCCSEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHH-HCCCEEEEEeCCccccc-------------cCCceEEccCCChHHHHHhhcCCCCEE
Confidence            4678999999999999999984 67999999998754310             011100  01112345566776 9999


Q ss_pred             EEcCC
Q 020301          241 SLHPV  245 (328)
Q Consensus       241 ~l~~p  245 (328)
                      +.+..
T Consensus        68 ih~a~   72 (286)
T 3gpi_A           68 VYCVA   72 (286)
T ss_dssp             EECHH
T ss_pred             EEeCC
Confidence            87754

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=93.51  E-value=0.15  Score=47.00  Aligned_cols=38  Identities=24%  Similarity=0.326  Sum_probs=32.4

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .|.++.|+|.|.+|...++.+++..|.+|++.+++..+
T Consensus       163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r  200 (348)
T 4eez_A          163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDK  200 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHH
Confidence            47899999999999999988644678999999988654

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=93.48  E-value=0.13  Score=47.75  Aligned_cols=103  Identities=22%  Similarity=0.266  Sum_probs=60.7

Q ss_pred             CCEEEEEe-cCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc---cCCHHHHhhcCC
Q 020301          165 GQTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREAD  238 (328)
Q Consensus       165 g~tvgIiG-~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~aD  238 (328)
                      ..+|+|+| .|.+|..++..|+ ..|  -+|..+|+.....   .....    .+ ...+.....   ..++++.++.||
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~-~~g~~~ev~l~Di~~~~~---~~~dL----~~-~~~~~~v~~~~~t~d~~~al~gaD   78 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMK-MNPLVSVLHLYDVVNAPG---VTADI----SH-MDTGAVVRGFLGQQQLEAALTGMD   78 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHH-HCTTEEEEEEEESSSHHH---HHHHH----HT-SCSSCEEEEEESHHHHHHHHTTCS
T ss_pred             CCEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEeCCCcHh---HHHHh----hc-ccccceEEEEeCCCCHHHHcCCCC
Confidence            35899999 8999999999874 456  6899999765411   11001    11 111111111   135678899999


Q ss_pred             EEEEcCCCChhhhcc-------cc----HHH---HhcCCCCcEEEEcCCCcccCH
Q 020301          239 VISLHPVLDKTTYHL-------IN----KER---LATMKKEAILVNCSRGPVIDE  279 (328)
Q Consensus       239 iV~l~~plt~~t~~l-------i~----~~~---~~~mk~ga~lIN~aRG~~vde  279 (328)
                      +|+++.+... ..+.       .|    ++.   +....|.+++++.+  ..+|.
T Consensus        79 vVi~~ag~~~-~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S--NPv~~  130 (326)
T 1smk_A           79 LIIVPAGVPR-KPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS--NPVNS  130 (326)
T ss_dssp             EEEECCCCCC-CSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHHH
T ss_pred             EEEEcCCcCC-CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CchHH
Confidence            9999986332 1111       11    111   22234788999974  45665

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=93.46  E-value=0.23  Score=45.70  Aligned_cols=95  Identities=16%  Similarity=0.105  Sum_probs=58.7

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh------h
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------R  235 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~  235 (328)
                      ..|++|.|+|.|.+|...++.+ +.+|++ +++.+++.++.  ++..       +-|....-.....+..+..      .
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~a-k~~G~~~vi~~~~~~~k~--~~a~-------~lGa~~~i~~~~~~~~~~~~~~~~~~  228 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCA-VALGAKSVTAIDISSEKL--ALAK-------SFGAMQTFNSSEMSAPQMQSVLRELR  228 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHHH--HHHH-------HTTCSEEEETTTSCHHHHHHHHGGGC
T ss_pred             CCCCEEEEECCCCcchHHHHHH-HHcCCcEEEEEechHHHH--HHHH-------HcCCeEEEeCCCCCHHHHHHhhcccC
Confidence            3588999999999999999985 789986 56778776432  2222       2233222111223444333      2


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      ..|+|+-++.. +++    -+..++.++++..++.++
T Consensus       229 g~d~v~d~~G~-~~~----~~~~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          229 FNQLILETAGV-PQT----VELAVEIAGPHAQLALVG  260 (346)
T ss_dssp             SSEEEEECSCS-HHH----HHHHHHHCCTTCEEEECC
T ss_pred             Ccccccccccc-cch----hhhhhheecCCeEEEEEe
Confidence            36888877652 222    245667788888888765

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=93.46  E-value=0.13  Score=45.64  Aligned_cols=39  Identities=15%  Similarity=0.236  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEecC---HHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       162 ~l~g~tvgIiG~G---~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      +|.||++-|-|.+   -||+++|+.|+ .-|++|+..+|+...
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la-~~Ga~Vvi~~r~~~~   44 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLD-QLGAKLVFTYRKERS   44 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHH-HTTCEEEEEESSGGG
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            6899999999974   59999999985 789999999997643

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=93.43  E-value=0.22  Score=44.83  Aligned_cols=39  Identities=23%  Similarity=0.211  Sum_probs=33.3

Q ss_pred             cccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       161 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ..+.||++.|.|. |-||+++|+.|+ .-|++|+..+|+..
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l~-~~G~~V~~~~r~~~   44 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRVA-ADGANVALVAKSAE   44 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHH-TTTCEEEEEESCCS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECChh
Confidence            3588999999996 679999999985 77999999998864

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=93.42  E-value=0.72  Score=45.17  Aligned_cols=115  Identities=18%  Similarity=0.214  Sum_probs=71.5

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEE--------cCCc--hhHHHHHHhhhhhhhhcCCCCCccccccCCHH
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY--------DLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~--------d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (328)
                      +|.|+||.|-|+|++|+..|+.| ..+|++|++.        |+.-  ...+.++....+..   .+..  +.....+  
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L-~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i---~~~~--~a~~~~~--  312 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYL-HRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTI---LGFP--KAKIYEG--  312 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSS---TTCT--TSEEECS--
T ss_pred             CcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCe---eccc--Cceeecc--
Confidence            68999999999999999999997 5889999873        3321  11222221111100   0000  0111111  


Q ss_pred             HH-hhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          232 EV-LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       232 el-l~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      ++ -..||+++-|.     +.+.|+.+...+++ -.+++-.|-+++ ..+|- +.|.+..|.
T Consensus       313 ~il~~~~DIliPcA-----~~n~I~~~na~~l~-akiV~EgAN~p~-T~eA~-~iL~~rGIl  366 (501)
T 3mw9_A          313 SILEVDCDILIPAA-----SEKQLTKSNAPRVK-AKIIAEGANGPT-TPEAD-KIFLERNIM  366 (501)
T ss_dssp             CGGGSCCSEEEECS-----SSCCBCTTTGGGCC-CSEEECCSSSCB-CHHHH-HHHHHTTCE
T ss_pred             ccccccceEEeecc-----ccCccCHhHHHHcC-ceEEEeCCCCcC-CHHHH-HHHHHCCCE
Confidence            33 34799998774     36888888888886 568888899984 55553 556655453

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=93.39  E-value=0.15  Score=47.92  Aligned_cols=38  Identities=26%  Similarity=0.409  Sum_probs=31.9

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCc
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~  199 (328)
                      ..|.+++|.|||.|.+|..+|+.|+ ..|. ++..+|+..
T Consensus       114 ~~L~~~~VlvvG~GglGs~va~~La-~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          114 DKLKNAKVVILGCGGIGNHVSVILA-TSGIGEIILIDNDQ  152 (353)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-HHTCSEEEEEECCB
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-hCCCCeEEEECCCc
Confidence            4689999999999999999999985 5565 788888753

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=93.39  E-value=0.23  Score=46.45  Aligned_cols=93  Identities=13%  Similarity=0.177  Sum_probs=60.0

Q ss_pred             CCCEEEEEe-cCHHHHHHHHHHHhc-CCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-----c
Q 020301          164 KGQTVGVIG-AGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----E  236 (328)
Q Consensus       164 ~g~tvgIiG-~G~IG~~vA~~l~~~-fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  236 (328)
                      .|.+|.|+| .|.+|...++.+ +. .|++|++.+++....  ++.       ++-|....- ....++.+.+.     .
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qla-k~~~g~~Vi~~~~~~~~~--~~~-------~~lGad~vi-~~~~~~~~~v~~~~~~g  239 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIA-RQRTDLTVIATASRPETQ--EWV-------KSLGAHHVI-DHSKPLAAEVAALGLGA  239 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHH-HHHCCSEEEEECSSHHHH--HHH-------HHTTCSEEE-CTTSCHHHHHHTTCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHhcCCEEEEEeCCHHHH--HHH-------HHcCCCEEE-eCCCCHHHHHHHhcCCC
Confidence            688999999 999999999985 66 599999999876432  121       222322111 11124444333     5


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .|+|+-++.. ++    .-...++.++++..++.++
T Consensus       240 ~Dvvid~~g~-~~----~~~~~~~~l~~~G~iv~~g  270 (363)
T 4dvj_A          240 PAFVFSTTHT-DK----HAAEIADLIAPQGRFCLID  270 (363)
T ss_dssp             EEEEEECSCH-HH----HHHHHHHHSCTTCEEEECS
T ss_pred             ceEEEECCCc-hh----hHHHHHHHhcCCCEEEEEC
Confidence            7889887662 11    1245677888888888774

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=93.39  E-value=0.25  Score=45.21  Aligned_cols=113  Identities=15%  Similarity=0.235  Sum_probs=61.2

Q ss_pred             CEEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      .+|+|||.|.||+.+|-.|+ +++--++..||.......-+..| ......--.... ......+. +.++.||+|+++.
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~D-L~h~~~~~~~~~-~i~~~~d~-~~~~~aDvVvitA   77 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMD-LAHAAAGIDKYP-KIVGGADY-SLLKGSEIIVVTA   77 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHH-HHHHHGGGTCCC-EEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhh-hhcccccCCCCC-eEecCCCH-HHhCCCCEEEEec
Confidence            37999999999999998753 34445899999976432111111 111000000001 11111233 5689999999886


Q ss_pred             --CCCh-hhh-ccc--cH-------HHHhcCCCCcEEEEcCCCcccCHHHHH
Q 020301          245 --VLDK-TTY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDEVALV  283 (328)
Q Consensus       245 --plt~-~t~-~li--~~-------~~~~~mk~ga~lIN~aRG~~vde~aL~  283 (328)
                        |..| .|| .++  |.       +.+.+-.|+++++.++  ..+|.-..+
T Consensus        78 G~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvs--NPvd~~t~i  127 (294)
T 2x0j_A           78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMTYI  127 (294)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHHHH
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEec--CcchhhHHh
Confidence              3333 233 122  21       1333445788998884  345554443

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=93.33  E-value=0.19  Score=45.61  Aligned_cols=82  Identities=15%  Similarity=0.114  Sum_probs=50.7

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCC---CccccccCCHHHHhhcC
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ---PVTWKRASSMDEVLREA  237 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~ell~~a  237 (328)
                      .+.|+++.|.|. |-||+.+++.|+ .-|.+|++.+|+.... +.....+... ...+..   ........+++++++..
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~-~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~   84 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLL-EHGYKVRGTARSASKL-ANLQKRWDAK-YPGRFETAVVEDMLKQGAYDEVIKGA   84 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSHHHH-HHHHHHHHHH-STTTEEEEECSCTTSTTTTTTTTTTC
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHH-HCCCEEEEEeCCcccH-HHHHHHhhcc-CCCceEEEEecCCcChHHHHHHHcCC
Confidence            477899999998 999999999984 6799999999876432 1111110000 000000   00111234566778899


Q ss_pred             CEEEEcCCC
Q 020301          238 DVISLHPVL  246 (328)
Q Consensus       238 DiV~l~~pl  246 (328)
                      |+|+.+...
T Consensus        85 d~vih~A~~   93 (342)
T 1y1p_A           85 AGVAHIASV   93 (342)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEEeCCC
Confidence            999877654

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=93.31  E-value=0.11  Score=44.59  Aligned_cols=100  Identities=12%  Similarity=-0.007  Sum_probs=57.6

Q ss_pred             CEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCC--ccccccCCHHHHhhcCCEEEE
Q 020301          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       166 ~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiV~l  242 (328)
                      +++.|.| .|.||+.+++.| ..-|.+|++.+|+......         . ..+...  .......+++++++.+|+|+.
T Consensus         5 ~~ilItGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~---------~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   73 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEA-LNRGFEVTAVVRHPEKIKI---------E-NEHLKVKKADVSSLDEVCEVCKGADAVIS   73 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHH-HTTTCEEEEECSCGGGCCC---------C-CTTEEEECCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CEEEEEcCCchHHHHHHHHH-HHCCCEEEEEEcCcccchh---------c-cCceEEEEecCCCHHHHHHHhcCCCEEEE
Confidence            6899999 599999999998 4779999999998653110         0 000000  001112346788999999998


Q ss_pred             cCCCChhhhccc------cHHHHhcCCC-C-cEEEEcCCCcc
Q 020301          243 HPVLDKTTYHLI------NKERLATMKK-E-AILVNCSRGPV  276 (328)
Q Consensus       243 ~~plt~~t~~li------~~~~~~~mk~-g-a~lIN~aRG~~  276 (328)
                      +.........++      ....++.+++ + ..+|.+|....
T Consensus        74 ~a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~  115 (227)
T 3dhn_A           74 AFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGS  115 (227)
T ss_dssp             CCCC------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTT
T ss_pred             eCcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhh
Confidence            876543222111      1223333321 2 36888776543

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=93.19  E-value=0.2  Score=48.53  Aligned_cols=120  Identities=17%  Similarity=0.108  Sum_probs=69.3

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCC-------c--hhHHHHHHhhhhhhhhcCC-CCC-----ccc
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY-------Q--ATRLEKFVTAYGQFLKANG-EQP-----VTW  224 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~-------~--~~~~~~~~~~~~~~~~~~~-~~~-----~~~  224 (328)
                      .++.|+||.|-|+|++|+..|+.| ...|++|+ +.|.+       -  ...+....+ +..  ...+ ...     .+.
T Consensus       235 ~~l~g~~VaVQG~GnVG~~aa~~L-~e~GakvVavsD~~G~iyd~~Gld~~~l~~~~~-~k~--~~~~~v~~~~~~~~~a  310 (456)
T 3r3j_A          235 DNLENKKCLVSGSGNVAQYLVEKL-IEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMD-IKN--NQRLRLKEYLKYSKTA  310 (456)
T ss_dssp             CCSTTCCEEEECCSHHHHHHHHHH-HHHTCCBCCEECSSCEEECTTCCCHHHHHHHHH-HHH--TSCCCGGGGGGTCSSC
T ss_pred             CCccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCcEECCCCCCHHHHHHHHH-HHH--hcCcchhhhhhcCCCc
Confidence            468999999999999999999997 57899986 45532       1  011111000 000  0000 000     011


Q ss_pred             cccCCHHHH-hhcCCEEEEcCCCChhhhccccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          225 KRASSMDEV-LREADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       225 ~~~~~l~el-l~~aDiV~l~~plt~~t~~li~~~~~~~mk--~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      ... +-+++ -..||+++-|.     +.+.|+.+...+++  .=.+++-.|-+++-.+ | .+.|.+..|.
T Consensus       311 ~~v-~~~~i~~~~~DI~iPcA-----~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~e-A-~~iL~~rGI~  373 (456)
T 3r3j_A          311 KYF-ENQKPWNIPCDIAFPCA-----TQNEINENDADLFIQNKCKMIVEGANMPTHIK-A-LHKLKQNNII  373 (456)
T ss_dssp             EEE-CSCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHHTCCEEECCSSSCBCTT-H-HHHHHTTTCE
T ss_pred             eEe-CCccccccCccEEEeCC-----CccchhhHHHHHHHhcCCeEEEecCCCCCCHH-H-HHHHHHCCCE
Confidence            111 22333 24699998774     36778888777772  2457888888886544 3 2566665443

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=93.19  E-value=0.34  Score=43.16  Aligned_cols=28  Identities=32%  Similarity=0.614  Sum_probs=22.5

Q ss_pred             EEEEEec-CHHHHHHHHHHHhcCCcEEEE
Q 020301          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIY  194 (328)
Q Consensus       167 tvgIiG~-G~IG~~vA~~l~~~fg~~V~~  194 (328)
                      +|+|+|+ |+||+.+++.+...-++++.+
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva   30 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSA   30 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEE
Confidence            6999995 999999999863333888774

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=93.19  E-value=0.12  Score=48.20  Aligned_cols=116  Identities=16%  Similarity=0.170  Sum_probs=62.1

Q ss_pred             CEEEEEecCHHHHHHHHHHHhc-----C--CcEEE-EEcCCchhHHH-----HHHhhhhhhhhcCCCCCccccccC---C
Q 020301          166 QTVGVIGAGRIGSAYARMMVEG-----F--KMNLI-YYDLYQATRLE-----KFVTAYGQFLKANGEQPVTWKRAS---S  229 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~-----f--g~~V~-~~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---~  229 (328)
                      -++||||+|.||+.+++.+.+.     .  +++|. ++|++.....+     ++.+.+    .. +  ... ....   +
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~----~~-~--~~~-~~~~~~~d   78 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYK----EK-G--SLD-SLEYESIS   78 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHH----HT-T--CGG-GCCSEECC
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhh----cc-C--Ccc-cccCCCCC
Confidence            3799999999999999886421     1  46664 55766432110     011100    00 0  000 0123   7


Q ss_pred             HHHHh-hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCC
Q 020301          230 MDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNP  290 (328)
Q Consensus       230 l~ell-~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~v-de~aL~~aL~~g~  290 (328)
                      +++++ ...|+|+.|.|.. .|.+.--+-..+.++.|.-+|...-..+. +-+.|.++-++..
T Consensus        79 ~~~ll~~~iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~g  140 (331)
T 3c8m_A           79 ASEALARDFDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNN  140 (331)
T ss_dssp             HHHHHHSSCSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCCCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcC
Confidence            88888 3589999999964 22111112334455666666654333332 3356666655543

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=93.18  E-value=0.2  Score=44.85  Aligned_cols=40  Identities=23%  Similarity=0.152  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       161 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      ..+.||++.|.|. |-||+++|+.|+ .-|++|++.+++...
T Consensus        25 ~~~~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~   65 (283)
T 1g0o_A           25 ASLEGKVALVTGAGRGIGREMAMELG-RRGCKVIVNYANSTE   65 (283)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCchH
Confidence            4578999999985 689999999985 679999999987643

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=93.15  E-value=0.45  Score=43.49  Aligned_cols=120  Identities=15%  Similarity=0.179  Sum_probs=63.9

Q ss_pred             EEEEEe-cCHHHHHHHHHHHh-cCCcEEEEEcC--CchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          167 TVGVIG-AGRIGSAYARMMVE-GFKMNLIYYDL--YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       167 tvgIiG-~G~IG~~vA~~l~~-~fg~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      +|+|+| .|.+|+.++..|+. +..-++..+|+  .... .+........... .. ....... .+ .+.++.||+|++
T Consensus         2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~-~~~~~~dl~~~~~-~~-~~~~v~~-~~-~~a~~~aDvVi~   76 (303)
T 1o6z_A            2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDD-TVGQAADTNHGIA-YD-SNTRVRQ-GG-YEDTAGSDVVVI   76 (303)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHH-HHHHHHHHHHHHT-TT-CCCEEEE-CC-GGGGTTCSEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhh-HHHHHHHHHHHHh-hC-CCcEEEe-CC-HHHhCCCCEEEE
Confidence            799999 99999999998743 23337888998  5422 1111111111000 00 1111111 23 667999999999


Q ss_pred             cCCCChhhhcc-----------ccH---HHHhcCCCCcEEEEcCCCcccCH--HHHHHH--HHcCCccEE
Q 020301          243 HPVLDKTTYHL-----------INK---ERLATMKKEAILVNCSRGPVIDE--VALVEH--LKQNPMFRV  294 (328)
Q Consensus       243 ~~plt~~t~~l-----------i~~---~~~~~mk~ga~lIN~aRG~~vde--~aL~~a--L~~g~i~ga  294 (328)
                      +..... ..++           +-+   +.+.+..|++++++.+-  .+|.  ..+.+.  +...++.|.
T Consensus        77 ~ag~~~-~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SN--Pv~~~~~~~~~~~~~p~~rviG~  143 (303)
T 1o6z_A           77 TAGIPR-QPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN--PVDLLNRHLYEAGDRSREQVIGF  143 (303)
T ss_dssp             CCCCCC-CTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS--SHHHHHHHHHHHSSSCGGGEEEC
T ss_pred             cCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCC--hHHHHHHHHHHHcCCCHHHeeec
Confidence            876432 1111           111   22333467899999744  4443  333333  333356655

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=93.13  E-value=0.27  Score=47.25  Aligned_cols=95  Identities=20%  Similarity=0.167  Sum_probs=61.0

Q ss_pred             cCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc---------------
Q 020301          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---------------  226 (328)
Q Consensus       163 l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  226 (328)
                      -.|++|.|+|. |.||...++.+ +..|++|++.+++....  ++...+       |........               
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla-~~~Ga~vi~~~~~~~~~--~~~~~l-------Ga~~~i~~~~~~~~~~~~~~~~~~  288 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFV-KNGGGIPVAVVSSAQKE--AAVRAL-------GCDLVINRAELGITDDIADDPRRV  288 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH--HHHHHT-------TCCCEEEHHHHTCCTTGGGCHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHH--HHHHhc-------CCCEEEeccccccccccccccccc
Confidence            36899999998 99999999985 79999999998765432  122222       221110000               


Q ss_pred             -------cCCHHHHh-hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          227 -------ASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       227 -------~~~l~ell-~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                             ...+.++. ...|+|+-++..  +    .-...+..|+++..+|+++-
T Consensus       289 ~~~~~~~~~~v~~~~g~g~Dvvid~~G~--~----~~~~~~~~l~~~G~iv~~G~  337 (447)
T 4a0s_A          289 VETGRKLAKLVVEKAGREPDIVFEHTGR--V----TFGLSVIVARRGGTVVTCGS  337 (447)
T ss_dssp             HHHHHHHHHHHHHHHSSCCSEEEECSCH--H----HHHHHHHHSCTTCEEEESCC
T ss_pred             chhhhHHHHHHHHHhCCCceEEEECCCc--h----HHHHHHHHHhcCCEEEEEec
Confidence                   00111222 258999988763  2    12567788999999999863

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=93.04  E-value=0.077  Score=45.96  Aligned_cols=75  Identities=12%  Similarity=0.142  Sum_probs=50.0

Q ss_pred             cCCCEEEEEe-cCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhcCCCC--CccccccCCHHHHhhcC
Q 020301          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREA  237 (328)
Q Consensus       163 l~g~tvgIiG-~G~IG~~vA~~l~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~a  237 (328)
                      +.++++.|.| .|.||+.+++.|+ .-|.  +|++.+|+.....+.         ...+..  ........+++++++..
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~-~~G~~~~V~~~~r~~~~~~~~---------~~~~~~~~~~D~~d~~~~~~~~~~~   85 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEIL-EQGLFSKVTLIGRRKLTFDEE---------AYKNVNQEVVDFEKLDDYASAFQGH   85 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHH-HHTCCSEEEEEESSCCCCCSG---------GGGGCEEEECCGGGGGGGGGGGSSC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHH-cCCCCCEEEEEEcCCCCcccc---------ccCCceEEecCcCCHHHHHHHhcCC
Confidence            5688999999 6999999999985 6688  999999876431100         000000  00111224567788899


Q ss_pred             CEEEEcCCCC
Q 020301          238 DVISLHPVLD  247 (328)
Q Consensus       238 DiV~l~~plt  247 (328)
                      |+|+.+....
T Consensus        86 d~vi~~ag~~   95 (242)
T 2bka_A           86 DVGFCCLGTT   95 (242)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEECCCcc
Confidence            9999988754

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=93.03  E-value=0.064  Score=50.02  Aligned_cols=105  Identities=15%  Similarity=0.145  Sum_probs=61.1

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcc---ccccCCHHHHhhcCCE
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT---WKRASSMDEVLREADV  239 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~ell~~aDi  239 (328)
                      .++++.|.|. |.||+.+++.|+ .-|.+|++.+|+......+....      ..+.....   .....++.++++.+|+
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~~~~l~~------~~~v~~v~~D~l~d~~~l~~~~~~~d~   76 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAA-AVGHHVRAQVHSLKGLIAEELQA------IPNVTLFQGPLLNNVPLMDTLFEGAHL   76 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHH-HTTCCEEEEESCSCSHHHHHHHT------STTEEEEESCCTTCHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-hCCCEEEEEECCCChhhHHHHhh------cCCcEEEECCccCCHHHHHHHHhcCCE
Confidence            3678999995 999999999975 56899999988764321111000      00110000   1111246778999999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCC-C--cEEEEcCCCc
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKK-E--AILVNCSRGP  275 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~-g--a~lIN~aRG~  275 (328)
                      |+.+...............++.++. |  ..||++|...
T Consensus        77 Vi~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           77 AFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             EEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             EEEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            9877654311122223445554432 3  4788887754

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=93.00  E-value=0.17  Score=43.64  Aligned_cols=73  Identities=18%  Similarity=0.130  Sum_probs=48.5

Q ss_pred             cCCCEEEEEe-cCHHHHHHHHHHHhcC--CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCc--cccccCCHHHHhhcC
Q 020301          163 LKGQTVGVIG-AGRIGSAYARMMVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREA  237 (328)
Q Consensus       163 l~g~tvgIiG-~G~IG~~vA~~l~~~f--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~a  237 (328)
                      ..++++.|.| .|.||+.+++.|+ .-  |.+|++.+|+.... +..         ..+....  ......+++++++..
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~-~~~~g~~V~~~~r~~~~~-~~~---------~~~~~~~~~D~~d~~~~~~~~~~~   70 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLK-EGSDKFVAKGLVRSAQGK-EKI---------GGEADVFIGDITDADSINPAFQGI   70 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHH-HTTTTCEEEEEESCHHHH-HHT---------TCCTTEEECCTTSHHHHHHHHTTC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHH-hcCCCcEEEEEEcCCCch-hhc---------CCCeeEEEecCCCHHHHHHHHcCC
Confidence            3578999999 5999999999985 55  89999999976432 110         0011100  011123567888999


Q ss_pred             CEEEEcCCC
Q 020301          238 DVISLHPVL  246 (328)
Q Consensus       238 DiV~l~~pl  246 (328)
                      |+|+.+...
T Consensus        71 d~vi~~a~~   79 (253)
T 1xq6_A           71 DALVILTSA   79 (253)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEEeccc
Confidence            999887754

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=92.93  E-value=0.18  Score=46.95  Aligned_cols=37  Identities=19%  Similarity=0.435  Sum_probs=32.3

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcC-CcEEEEEcCCchh
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQAT  201 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~f-g~~V~~~d~~~~~  201 (328)
                      .|.+|.|+|.|.+|...++.+ +.+ |++|++.+++...
T Consensus       186 ~g~~VlV~GaG~vG~~avqla-k~~~Ga~Vi~~~~~~~~  223 (359)
T 1h2b_A          186 PGAYVAIVGVGGLGHIAVQLL-KVMTPATVIALDVKEEK  223 (359)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHCCCEEEEEESSHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEeCCHHH
Confidence            478999999999999999984 788 9999999987643

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=92.91  E-value=0.27  Score=41.90  Aligned_cols=70  Identities=14%  Similarity=0.128  Sum_probs=47.3

Q ss_pred             EEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcc--ccc-cCCHHHHhhcCCEEEE
Q 020301          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKR-ASSMDEVLREADVISL  242 (328)
Q Consensus       167 tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~l~ell~~aDiV~l  242 (328)
                      ++.|.| .|.||+.+++.| ..-|.+|++.+|+......           ..+.....  ... ..++.++++++|+|+.
T Consensus         2 ~ilItGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~-----------~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~   69 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSL-STTDYQIYAGARKVEQVPQ-----------YNNVKAVHFDVDWTPEEMAKQLHGMDAIIN   69 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHH-TTSSCEEEEEESSGGGSCC-----------CTTEEEEECCTTSCHHHHHTTTTTCSEEEE
T ss_pred             eEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCccchhh-----------cCCceEEEecccCCHHHHHHHHcCCCEEEE
Confidence            688999 799999999998 5779999999998653110           00000000  111 2346677889999998


Q ss_pred             cCCCCh
Q 020301          243 HPVLDK  248 (328)
Q Consensus       243 ~~plt~  248 (328)
                      +.....
T Consensus        70 ~ag~~~   75 (219)
T 3dqp_A           70 VSGSGG   75 (219)
T ss_dssp             CCCCTT
T ss_pred             CCcCCC
Confidence            887654

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=92.88  E-value=0.076  Score=51.90  Aligned_cols=38  Identities=21%  Similarity=0.398  Sum_probs=29.8

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCc---EEEEEcCCch
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~---~V~~~d~~~~  200 (328)
                      .+.+ +|.|||+|.||+.+|+.|++..++   +|+..|+...
T Consensus        11 ~~~~-rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~   51 (480)
T 2ph5_A           11 LFKN-RFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGT   51 (480)
T ss_dssp             CCCS-CEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCC
T ss_pred             cCCC-CEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchh
Confidence            3444 489999999999999998776666   6888887643

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=92.82  E-value=0.16  Score=45.70  Aligned_cols=39  Identities=23%  Similarity=0.228  Sum_probs=31.1

Q ss_pred             ccccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       160 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      ..++.||++.|.|. |-||+++|+.|+ .-|++|++.+++.
T Consensus        18 ~~~l~~k~~lVTGas~gIG~aia~~L~-~~G~~V~~~~r~~   57 (288)
T 2x9g_A           18 GSHMEAPAAVVTGAAKRIGRAIAVKLH-QTGYRVVIHYHNS   57 (288)
T ss_dssp             ----CCCEEEETTCSSHHHHHHHHHHH-HHTCEEEEEESSC
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCeEEEEeCCc
Confidence            35689999999985 789999999985 6799999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	328
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	2e-39
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	4e-28
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	4e-27
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	3e-26
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	1e-25
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	2e-15
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	4e-15
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	1e-14
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	1e-14
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	6e-14
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	2e-13
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	1e-11
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	2e-10
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	4e-09
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	4e-08
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	3e-07
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	4e-06
d1pjqa1	113	c.2.1.11 (A:1-113) Siroheme synthase CysG, domain	9e-05
d1pgja2	178	c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase	3e-04

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score =  135 bits (340), Expect = 2e-39
 Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 15/206 (7%)

Query: 119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGS 178
           +T  TAE+A  L L +ARR  E ++ +R   + GW P   VG  L  +T+G+ G G IG 
Sbjct: 1   VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQ 60

Query: 179 AYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238
           A A+   +GF M++ Y+D ++A               ++ E         S+D +L  + 
Sbjct: 61  ALAKRA-QGFDMDIDYFDTHRA--------------SSSDEASYQATFHDSLDSLLSVSQ 105

Query: 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298
             SL+      T +  NK  + ++ + AI+VN +RG ++D   +V  L+   +   G DV
Sbjct: 106 FFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDV 165

Query: 299 FEDEPYMKPGLSEMKNAIVVPHIASA 324
           F  EP +  G  ++ N  + PHI SA
Sbjct: 166 FAGEPNINEGYYDLPNTFLFPHIGSA 191

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  105 bits (263), Expect = 4e-28
 Identities = 67/202 (33%), Positives = 97/202 (48%), Gaps = 20/202 (9%)

Query: 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 179
             + AE A +L LAA+R+I  AD  +R      W  + F G  + G+TVGV+G GRIG  
Sbjct: 2   IHSAAEHALALLLAASRQIPAADASLREH---TWKRSSFSGTEIFGKTVGVVGLGRIGQL 58

Query: 180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239
            A+ +   F   ++ YD Y +      +                     S+D++L  AD 
Sbjct: 59  VAQRIAA-FGAYVVAYDPYVSPARAAQLGIE----------------LLSLDDLLARADF 101

Query: 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           IS+H      T  LI+KE LA  K   I+VN +RG ++DE AL + +    +   GLDVF
Sbjct: 102 ISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVF 161

Query: 300 EDEPYMKPGLSEMKNAIVVPHI 321
             EP     L E+   +V PH+
Sbjct: 162 ATEPCTDSPLFELAQVVVTPHL 183

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score =  103 bits (256), Expect = 4e-27
 Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 22/208 (10%)

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLY----DGWLPNLFVGNLLKGQTVGVIGAGRI 176
           E TA+      L   RR     + +R G      +           ++G+T+G+IG GR+
Sbjct: 1   EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60

Query: 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236
           G A A          L Y                              +R S++ ++L  
Sbjct: 61  GQAVALRAKAFGFNVLFYDPYLSDGVERAL----------------GLQRVSTLQDLLFH 104

Query: 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296
           +D ++LH  L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    L
Sbjct: 105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAAL 164

Query: 297 DVFEDEPYMKPG--LSEMKNAIVVPHIA 322
           DV E EP+      L +  N I  PH A
Sbjct: 165 DVHESEPFSFSQGPLKDAPNLICTPHAA 192

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score =  100 bits (250), Expect = 3e-26
 Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 17/202 (8%)

Query: 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 181
           + AE    + L+  R  + + E+ R G ++     +     L+   VG + AGRIG A  
Sbjct: 2   SVAEHVVMMILSLVRNYLPSHEWARKGGWN-IADCVSHAYDLEAMHVGTVAAGRIGLAVL 60

Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           R +   F ++L Y D ++                 + E+ +     ++ +++    DV++
Sbjct: 61  RRL-APFDVHLHYTDRHRLPE--------------SVEKELNLTWHATREDMYPVCDVVT 105

Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           L+  L   T H+IN E L   K+ A +VN +RG + D  A+   L+   +     DV+  
Sbjct: 106 LNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFP 165

Query: 302 EPYMKPG-LSEMKNAIVVPHIA 322
           +P  K      M    + PHI+
Sbjct: 166 QPAPKDHPWRTMPYNGMTPHIS 187

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 98.9 bits (245), Expect = 1e-25
 Identities = 42/208 (20%), Positives = 78/208 (37%), Gaps = 27/208 (12%)

Query: 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 179
           T + AEL     L   R + EA+     G+ +      F                   + 
Sbjct: 2   TRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSF------------------EAR 43

Query: 180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239
             ++ + G+        +   +          +     G           + ++L  +DV
Sbjct: 44  GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQH----LSDLLNMSDV 99

Query: 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           +SLH   + +T +++  + ++ MK  ++L+N SRG V+D  AL + L    +    +DVF
Sbjct: 100 VSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVF 159

Query: 300 EDEPYMKPG-----LSEMKNAIVVPHIA 322
             EP          L+E  N ++ PHI 
Sbjct: 160 PTEPATNSDPFTSPLAEFDNVLLTPHIG 187

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 71.8 bits (174), Expect = 2e-15
 Identities = 53/216 (24%), Positives = 84/216 (38%), Gaps = 35/216 (16%)

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
              AE AA  +    R+    DE +             +G  ++ Q VGV+G G IG  +
Sbjct: 2   NAIAEHAAIQAARILRQDKAMDEKVARH---DLRWAPTIGREVRDQVVGVVGTGHIGQVF 58

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
            ++M       + Y                                  S+D++ ++ADVI
Sbjct: 59  MQIMEGFGAKVITYDIFRNPE------------------LEKKGYYVDSLDDLYKQADVI 100

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLH        H+IN E +A MK++ ++VN SRGP++D  A++  L    +F   +DV+E
Sbjct: 101 SLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYE 160

Query: 301 DEPYMKPG--------------LSEMKNAIVVPHIA 322
            E  +                 L    N +V P  A
Sbjct: 161 GEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTA 196

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 70.6 bits (171), Expect = 4e-15
 Identities = 49/217 (22%), Positives = 83/217 (38%), Gaps = 35/217 (16%)

Query: 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 179
               AE A + +L   R + +    ++AG Y+     +       GQ    +        
Sbjct: 2   PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKEL---GQQTVGVMGTGHIGQ 58

Query: 180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239
            A  + +GF   +I YD Y                              S++++ +++DV
Sbjct: 59  VAIKLFKGFGAKVIAYDPYPMKGDHP------------------DFDYVSLEDLFKQSDV 100

Query: 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           I LH    +   H+IN+     MK  AI++N +R  +ID  A++ +LK   +  VG+D +
Sbjct: 101 IDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTY 160

Query: 300 EDEPYMKPG--------------LSEMKNAIVVPHIA 322
           E E                    L  M N ++ PHIA
Sbjct: 161 EYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIA 197

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 67.7 bits (165), Expect = 1e-14
 Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 5/128 (3%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +++ T P+P    +     +   V         ++++++I       D ++  L E  
Sbjct: 1   KKKILITWPLP-EAAMARA-RESYDVIA-HGDDPKITIDEMIETAKS-VDALLITLNEKC 56

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
            + +   +     K  S  ++G++++D++A    GI VGN P   T+   ++A   +   
Sbjct: 57  RKEVIDRIPE-NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLI 115

Query: 135 ARRIVEAD 142
                 AD
Sbjct: 116 DALFGGAD 123

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 67.4 bits (164), Expect = 1e-14
 Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 5/131 (3%)

Query: 18  VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGET 77
               +      +     +    +E  T+       E+ +       DG+    T  +   
Sbjct: 5   AYGARVDEIQYFKQWAKDTGNTLEYHTEFLD----ENTVEWAKG-FDGINSLQTTPYAAG 59

Query: 78  LFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARR 137
           +F  +   G K  +   VG +N+D+ A  +YGI + N P         +           
Sbjct: 60  VFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDF 119

Query: 138 IVEADEFMRAG 148
           + + +      
Sbjct: 120 LTKGETSTEVT 130

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 67.1 bits (162), Expect = 6e-14
 Identities = 42/204 (20%), Positives = 73/204 (35%), Gaps = 27/204 (13%)

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           +  AE A +L LA  +RI++  E M+ G Y   +        L       +         
Sbjct: 2   DAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE-----IPLIQGEKVAVLGLGEIGTR 56

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
              ++      +  +                        +   W+  +S++E LREA   
Sbjct: 57  VGKILAALGAQVRGFSRTP--------------------KEGPWRFTNSLEEALREARAA 96

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
                L+K T  L+  + LA M ++A+ VN  R  V+D   ++  LK+ P F    DV+ 
Sbjct: 97  VCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWW 156

Query: 301 DEPYMKPG--LSEMKNAIVVPHIA 322
                        + N +  P +A
Sbjct: 157 GRNDFAKDAEFFSLPNVVATPWVA 180

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 64.0 bits (155), Expect = 2e-13
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
            +     V            + ++A + +  D ++ +        + AA  +   K  + 
Sbjct: 18  ALGDQVEVRWVDG----PDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPK--LKIVAR 70

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
             VG +NVDV+AA   G+ V N P   +   A+  A   +A + R+  A EF+   +  G
Sbjct: 71  AGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVG 130

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 59.2 bits (143), Expect = 1e-11
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKA 89
           +    +    VE+      +L+  + +AL     DGV+     D+      AL+  G   
Sbjct: 16  LKEWEDAHKDVEV-EYTDKLLT-PETVALAKG-ADGVVVYQQLDYIAETLQALADNGITK 72

Query: 90  FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRI 138
            S   VG +N+D+  A + G  + N P     +    A    +  A   
Sbjct: 73  MSLRNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDN 118

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 2e-10
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 13/132 (9%)

Query: 24  MPGTRWINLLIEQDCRVEICTQKK-------TILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           MP    + LL  +DC VE+   K           S ++I   + ++  G +   T     
Sbjct: 1   MP---LVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTR 57

Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
                      +    +  G++N+D+ +A   GIAV N P     +  + +  +   AAR
Sbjct: 58  EDLEKFKAL--RIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVYS-EQASIEMREEAAR 114

Query: 137 RIVEADEFMRAG 148
            I  A       
Sbjct: 115 EIRRAITGRIPD 126

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 4e-09
 Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 21/142 (14%)

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
             ++ G+   V G G +G   A+ +  GF   +I  ++     L+  +   G        
Sbjct: 19  DVMIAGKVAVVAGYGDVGKGCAQAL-RGFGARVIITEIDPINALQAAM--EGY------- 68

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVID 278
                   ++MDE  +E ++             +I       MK +AI+ N       ID
Sbjct: 69  ------EVTTMDEACQEGNIFVTTT----GCIDIILGRHFEQMKDDAIVCNIGHFDVEID 118

Query: 279 EVALVEHLKQNPMFRVGLDVFE 300
              L E+  +    +  +D + 
Sbjct: 119 VKWLNENAVEKVNIKPQVDRYR 140

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 50.4 bits (120), Expect = 4e-08
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 8/71 (11%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELA--------ASLSLAAARRIV 139
           K      +G ++VD+ +A    + V       + T    A                R I 
Sbjct: 115 KLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIR 174

Query: 140 EADEFMRAGLY 150
           +    ++ G  
Sbjct: 175 DEYLIVQGGAL 185

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 24/108 (22%), Positives = 34/108 (31%), Gaps = 3/108 (2%)

Query: 41  EICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNV 100
                 K  L  E +   I D    +   L      T     +     A    A+G N V
Sbjct: 27  TNIEFHKGALDDEQLKESIRD-AHFIG--LRSRTHLTEDVINAAEKLVAIGAFAIGTNQV 83

Query: 101 DVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAG 148
           D++AA K GI V N P   T+   E           +  +    + A 
Sbjct: 84  DLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 131

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 43.0 bits (101), Expect = 4e-06
 Identities = 8/96 (8%), Positives = 19/96 (19%), Gaps = 31/96 (32%)

Query: 87  GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
            K    +  G +++   +     + V    G        +   + + A R          
Sbjct: 51  LKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNGYGNERVWRQMVMEAVR---------- 99

Query: 147 AGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
                                +     G      A+
Sbjct: 100 --------------------NLITYATGGRPRNIAK 115

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

 Score = 39.3 bits (91), Expect = 9e-05
 Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 16/109 (14%)

Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           L+ +   ++G G +    AR+++E                    +T              
Sbjct: 10  LRDRDCLIVGGGDVAERKARLLLE----------------AGARLTVNALTFIPQFTVWA 53

Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
                + ++    E  + S    +  T    +N+      +   I  N 
Sbjct: 54  NEGMLTLVEGPFDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNV 102

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 7/146 (4%)

Query: 168 VGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
           VGV+G G +G+  A  + E GFK  +  ++   + + E+F+ A      A   +      
Sbjct: 4   VGVVGLGVMGANLALNIAEKGFK--VAVFNRTYS-KSEEFMKANASAPFAGNLKAFETME 60

Query: 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
            +    + +    + L      T   +         +K  ILV+       D+    + L
Sbjct: 61  -AFAASLKKPRKALILVQAGAATDSTIEQ--LKKVFEKGDILVDTGNAHFKDQGRRAQQL 117

Query: 287 KQNPMFRVGLDVFEDEPYMKPGLSEM 312
           +   +  +G+ +   E   + G +  
Sbjct: 118 EAAGLRFLGMGISGGEEGARKGPAFF 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	328
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.93
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.9
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.88
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.87
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.85
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.82
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.82
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.8
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.74
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.51
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.35
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.26
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.24
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.23
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.11
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.91
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.84
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	98.83
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	98.8
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.78
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	98.71
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.64
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.6
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.57
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.46
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.43
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.41
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.3
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.27
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.26
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.06
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.01
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.01
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.99
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.99
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.99
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.9
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.88
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.87
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.75
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.74
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.72
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.7
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.7
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.59
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.48
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.48
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.46
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.45
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.36
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.35
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.33
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.32
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.32
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.3
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.3
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.3
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.29
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.29
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.28
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.26
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.26
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.25
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.19
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.18
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.16
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.16
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.15
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.14
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.05
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.04
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.04
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.99
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.99
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.96
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.94
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	96.91
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.88
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	96.8
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.76
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.75
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	96.73
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.68
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.63
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.57
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.53
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.48
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.48
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.45
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.44
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.44
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.4
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	96.38
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.35
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.34
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	96.34
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	96.26
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.24
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.17
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	96.17
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	96.13
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	96.12
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.09
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.01
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	95.98
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	95.94
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	95.94
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	95.93
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.85
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.8
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.8
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.72
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	95.71
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.69
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	95.61
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	95.51
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	95.51
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	95.36
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.31
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.29
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.18
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.14
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	95.08
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.98
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.91
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	94.89
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.84
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.81
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	94.77
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	94.76
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	94.74
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.72
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.71
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.61
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	94.5
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	94.45
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	94.29
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.27
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.22
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	94.21
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.2
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.19
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	94.09
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.09
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.06
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	93.97
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	93.96
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	93.92
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	93.88
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.87
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	93.86
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	93.86
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	93.85
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.67
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.64
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	93.61
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	93.51
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	93.48
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.45
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	93.42
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.39
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	93.37
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.36
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.32
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	93.3
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	93.3
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	93.28
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	93.26
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	93.25
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.25
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	93.19
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	92.95
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	92.94
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	92.92
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	92.84
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	92.79
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	92.78
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	92.76
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	92.73
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	92.71
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	92.58
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	92.47
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.46
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.35
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	92.29
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	92.26
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	92.24
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	92.19
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	92.07
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	92.04
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.89
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	91.87
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	91.86
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	91.82
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	91.81
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	91.78
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	91.49
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	91.49
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	91.39
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.19
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	90.99
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.98
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	90.87
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	90.84
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	90.76
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	90.74
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	90.71
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	90.49
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.38
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	90.37
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	90.25
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	90.21
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	90.21
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	90.2
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	90.09
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	90.05
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	89.94
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	89.7
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	89.56
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.55
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.55
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.34
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	89.03
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	89.01
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	88.85
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	88.8
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	88.65
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	88.59
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	88.41
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	88.4
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	88.37
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	88.35
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	88.21
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.17
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	88.13
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	88.09
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.74
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.73
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.49
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	87.42
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	87.16
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	87.12
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	87.06
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	87.04
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	86.99
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	86.88
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.78
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	86.48
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	86.19
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	86.14
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	86.03
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	85.96
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	85.55
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	85.53
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	85.49
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	84.96
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	84.64
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	83.95
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	83.93
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	83.25
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	83.23
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	83.16
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	82.8
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	82.35
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	82.29
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	82.23
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	82.22
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	81.78
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	81.62
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	81.14
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	80.88
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	80.49
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	80.46
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	80.44
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	80.4
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	80.01

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=1.1e-56  Score=392.71  Aligned_cols=190  Identities=33%  Similarity=0.537  Sum_probs=173.1

Q ss_pred             CchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       120 ~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      +.+|||+++++||+++|++.++++.+++|.|.+|.+....++++.|+|+||||+|+||+.+|+++ ++|||+|++||++.
T Consensus         2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l-~~fg~~v~~~d~~~   80 (191)
T d1gdha1           2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRA-QGFDMDIDYFDTHR   80 (191)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSC
T ss_pred             CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHH-Hhhccccccccccc
Confidence            35899999999999999999999999999999998776778999999999999999999999996 79999999999976


Q ss_pred             hhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCH
Q 020301          200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (328)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde  279 (328)
                      ........              .......++++++++||+|++|+|+|++|++|||++.|++||+|++|||+|||++|||
T Consensus        81 ~~~~~~~~--------------~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde  146 (191)
T d1gdha1          81 ASSSDEAS--------------YQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDN  146 (191)
T ss_dssp             CCHHHHHH--------------HTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCH
T ss_pred             cccchhhc--------------ccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhh
Confidence            53322111              0122457899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCCCC
Q 020301          280 VALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASA  324 (328)
Q Consensus       280 ~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~  324 (328)
                      +||++||++|+|+||+||||++||++++|||++|||++|||||++
T Consensus       147 ~aL~~aL~~g~i~~a~lDV~~~EP~~~~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         147 ELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             HHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTC
T ss_pred             HHHHHHHHcCCceEEEEECCCCCCCCCchHHcCCCEEECCccccC
Confidence            999999999999999999999999888899999999999999984

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.7e-56  Score=388.26  Aligned_cols=184  Identities=36%  Similarity=0.514  Sum_probs=167.6

Q ss_pred             CCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCC
Q 020301          119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (328)
Q Consensus       119 ~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~  198 (328)
                      |+.+||||++++||++.|++..+++.+++|.|..   ..+.+.++.|+++||+|+|+||+.+|+++ ++|||+|++|||+
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~---~~~~~~~l~~k~vgiiG~G~IG~~va~~~-~~fg~~v~~~d~~   76 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKR---SSFSGTEIFGKTVGVVGLGRIGQLVAQRI-AAFGAYVVAYDPY   76 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCG---GGCCBCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEECTT
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCc---cccccccccceeeeeccccchhHHHHHHh-hhccceEEeecCC
Confidence            6789999999999999999999999999998752   33467899999999999999999999996 8999999999998


Q ss_pred             chhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccC
Q 020301          199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (328)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vd  278 (328)
                      ..+......                .....+++|++++||+|++|||+|++|++|||++.|++||+|++|||+|||++||
T Consensus        77 ~~~~~~~~~----------------~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVd  140 (184)
T d1ygya1          77 VSPARAAQL----------------GIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVD  140 (184)
T ss_dssp             SCHHHHHHH----------------TCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBC
T ss_pred             CChhHHhhc----------------CceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhh
Confidence            765322110                1134799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCCC
Q 020301          279 EVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  322 (328)
Q Consensus       279 e~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia  322 (328)
                      |+||++||++|+|+||+||||++||++++|||++|||++|||||
T Consensus       141 e~aL~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         141 EAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             HHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCS
T ss_pred             hHHHHHHHhcCcEeEEEEeCCCCCCCCCchHhcCCCEEECCCCC
Confidence            99999999999999999999999999889999999999999997

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=7.5e-55  Score=381.44  Aligned_cols=187  Identities=32%  Similarity=0.483  Sum_probs=166.6

Q ss_pred             chHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCC----CcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEc
Q 020301          121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP----NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (328)
Q Consensus       121 ~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~----~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d  196 (328)
                      ++|||+++++||+++|++..+++.+++|.|.++..    ....+.+|+|+|+||||+|+||+.+|+++ ++|||+|++||
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l-~~fg~~v~~~d   79 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA-KAFGFNVLFYD   79 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEC
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeee-eccccceeecc
Confidence            47999999999999999999999999999864321    12357899999999999999999999996 89999999999


Q ss_pred             CCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc
Q 020301          197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (328)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~  276 (328)
                      |+........               .+.....+|++++++||+|++|||+|++|+++||++.|++||+|++|||+|||++
T Consensus        80 ~~~~~~~~~~---------------~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~i  144 (193)
T d1mx3a1          80 PYLSDGVERA---------------LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGL  144 (193)
T ss_dssp             TTSCTTHHHH---------------HTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTS
T ss_pred             Ccccccchhh---------------hccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceE
Confidence            9865432211               1123457999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHcCCccEEEEeCCCCCCCC--CCCcccCCCeEEcCCCCC
Q 020301          277 IDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHIAS  323 (328)
Q Consensus       277 vde~aL~~aL~~g~i~gaalDV~~~EP~~--~~~L~~~~nvilTPHia~  323 (328)
                      ||++||+++|++|+|+||+||||++||++  ++||+++|||++|||+|+
T Consensus       145 vde~aL~~aL~~~~i~~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         145 VDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             BCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             EcHHHHHHHHHcCCceEEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence            99999999999999999999999999975  469999999999999986

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=2.3e-54  Score=380.41  Aligned_cols=183  Identities=32%  Similarity=0.463  Sum_probs=164.0

Q ss_pred             chHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       121 ~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ++||||++++||+++|++..+++.+++|.|..+.  .+.+++|.|+|+||||+|+||+.+|+++ ++|||+|++|||+..
T Consensus         3 ~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~--~~~~~~l~~ktvgIiG~G~IG~~va~~l-~~fg~~v~~~d~~~~   79 (199)
T d1dxya1           3 AAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAG--TFIGKELGQQTVGVMGTGHIGQVAIKLF-KGFGAKVIAYDPYPM   79 (199)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHT--CCCCCCGGGSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCC
T ss_pred             hHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCccc--Ccccccccceeeeeeecccccccccccc-cccceeeeccCCccc
Confidence            5899999999999999999999999999985321  2457899999999999999999999996 899999999999864


Q ss_pred             hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHH
Q 020301          201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV  280 (328)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~  280 (328)
                      ...+                  ......++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++
T Consensus        80 ~~~~------------------~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~  141 (199)
T d1dxya1          80 KGDH------------------PDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQ  141 (199)
T ss_dssp             SSCC------------------TTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHH
T ss_pred             hhhh------------------cchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhH
Confidence            3110                  0123469999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCccEEEEeCCCCCCCC----------C----CCcccCCCeEEcCCCCCC
Q 020301          281 ALVEHLKQNPMFRVGLDVFEDEPYM----------K----PGLSEMKNAIVVPHIASA  324 (328)
Q Consensus       281 aL~~aL~~g~i~gaalDV~~~EP~~----------~----~~L~~~~nvilTPHia~~  324 (328)
                      ||++||++|+|+||+||||++||.+          +    ++|+++|||++|||+|||
T Consensus       142 aL~~aL~~g~i~ga~lDV~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         142 AMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             HHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             HHHHHHhcCCcceEeccccCCCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            9999999999999999999999952          1    368899999999999997

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=1.8e-53  Score=371.73  Aligned_cols=186  Identities=25%  Similarity=0.318  Sum_probs=165.3

Q ss_pred             hHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       122 ~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      +||||+++++|+++|++..++..+++|.|+.+. ....+.++.|+++||+|+|+||+++|+++ ++|||+|.+||++..+
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~l~~~~vgiiG~G~IG~~va~~l-~~fg~~v~~~d~~~~~   79 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIAD-CVSHAYDLEAMHVGTVAAGRIGLAVLRRL-APFDVHLHYTDRHRLP   79 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHH-HHTTCCCCTTCEEEEECCSHHHHHHHHHH-GGGTCEEEEECSSCCC
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcc-cCCcceeccccceeeccccccchhhhhhh-hccCceEEEEeecccc
Confidence            799999999999999999999999999885332 12346789999999999999999999996 8999999999997644


Q ss_pred             HHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHH
Q 020301          202 RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA  281 (328)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~a  281 (328)
                      ......              .......++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++|
T Consensus        80 ~~~~~~--------------~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~a  145 (188)
T d2naca1          80 ESVEKE--------------LNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDA  145 (188)
T ss_dssp             HHHHHH--------------HTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHH
T ss_pred             cccccc--------------ccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHH
Confidence            322110              112345799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCccEEEEeCCCCCCCC-CCCcccCCCeEEcCCCCC
Q 020301          282 LVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIAS  323 (328)
Q Consensus       282 L~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~  323 (328)
                      |++||++|++.||+||||++||++ ++||+++||+++||||||
T Consensus       146 L~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         146 VARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             HHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred             HHHHHhCCCceeEEEeCCCCCCCCCCChHHcCCCeEEccccCc
Confidence            999999999999999999999986 479999999999999997

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=2.1e-53  Score=373.27  Aligned_cols=182  Identities=35%  Similarity=0.555  Sum_probs=164.2

Q ss_pred             chHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       121 ~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ++||||++++||+++|++..+++.+++|.|. |.+  ..|++|.|+||||||+|+||+.+|+++ ++|||+|++||++..
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~-w~~--~~g~el~gk~vgIiG~G~IG~~va~~l-~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLR-WAP--TIGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRN   77 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCC-CTT--CCBCCGGGSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCC
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCC-cCC--CcCccccCCeEEEecccccchhHHHhH-hhhcccccccCcccc
Confidence            5899999999999999999999999999985 765  468999999999999999999999997 899999999999875


Q ss_pred             hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHH
Q 020301          201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV  280 (328)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~  280 (328)
                      +..+.           .      .....++++++++||+|++|||+|++|+++||++.|++||+|++|||+|||++||++
T Consensus        78 ~~~~~-----------~------~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~  140 (197)
T d1j4aa1          78 PELEK-----------K------GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTD  140 (197)
T ss_dssp             HHHHH-----------T------TCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHH
T ss_pred             ccccc-----------c------eeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhH
Confidence            43221           0      113468999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCccEEEEeCCCCCCCCC--------------CCcccCCCeEEcCCCCC
Q 020301          281 ALVEHLKQNPMFRVGLDVFEDEPYMK--------------PGLSEMKNAIVVPHIAS  323 (328)
Q Consensus       281 aL~~aL~~g~i~gaalDV~~~EP~~~--------------~~L~~~~nvilTPHia~  323 (328)
                      ||++||++|+++||+||||++||...              +|||++|||++|||+|+
T Consensus       141 aL~~aL~~~~i~~a~lDV~~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         141 AVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             HHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             HHHHHHhcccchheeeeccccCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            99999999999999999999997421              36899999999999986

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.9e-53  Score=368.91  Aligned_cols=183  Identities=27%  Similarity=0.426  Sum_probs=157.5

Q ss_pred             CCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCC
Q 020301          119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (328)
Q Consensus       119 ~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~  198 (328)
                      |+++||||+++++|++.|+++.+++.+++|.|..+.   ..+.++.|+++||+|+|+||+.+|+++ ++|||+|++||++
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~---~~~~~l~~~~vgiiG~G~IG~~va~~l-~~fg~~v~~~d~~   76 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLA---AGSFEARGKKLGIIGYGHIGTQLGILA-ESLGMYVYFYDIE   76 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC--------CCCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSS
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccc---cccccccceEEEEeecccchhhhhhhc-ccccceEeecccc
Confidence            678999999999999999999999999999886432   356799999999999999999999996 8999999999987


Q ss_pred             chhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccC
Q 020301          199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (328)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vd  278 (328)
                      ....                  ........+++|++++||+|++|||+|++|+++||++.|++||+|++|||+|||++||
T Consensus        77 ~~~~------------------~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvd  138 (188)
T d1sc6a1          77 NKLP------------------LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD  138 (188)
T ss_dssp             CCCC------------------CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBC
T ss_pred             ccch------------------hhhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhh
Confidence            5431                  0112345689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCccEEEEeCCCCCCCC-----CCCcccCCCeEEcCCCCC
Q 020301          279 EVALVEHLKQNPMFRVGLDVFEDEPYM-----KPGLSEMKNAIVVPHIAS  323 (328)
Q Consensus       279 e~aL~~aL~~g~i~gaalDV~~~EP~~-----~~~L~~~~nvilTPHia~  323 (328)
                      ++||++||++|++.||+||||++||..     .+||+++|||++|||+||
T Consensus       139 e~aL~~aL~~~~~~~a~lDV~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         139 IPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             HHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSC
T ss_pred             hHHHHHHHHcCCceEEEEecCCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence            999999999999999999999999973     248999999999999997

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=2e-52  Score=362.56  Aligned_cols=179  Identities=27%  Similarity=0.432  Sum_probs=161.0

Q ss_pred             CchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       120 ~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      |++||||+++++|+++|++..+++.+++|.|....    ...++.|+|+||||+|+||+.+|+++ ++|||+|++|||++
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~----~~~~l~gk~vgIiG~G~IG~~va~~l-~~~g~~v~~~d~~~   75 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV----EIPLIQGEKVAVLGLGEIGTRVGKIL-AALGAQVRGFSRTP   75 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS----CCCCCTTCEEEEESCSTHHHHHHHHH-HHTTCEEEEECSSC
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC----CCCcccCceEEEeccccccccceeee-eccccccccccccc
Confidence            46899999999999999999999999999885321    23479999999999999999999996 89999999999986


Q ss_pred             hhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCH
Q 020301          200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (328)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde  279 (328)
                      ...                    ......+++|++++||+|++|||+|++|+++||++.|++||+|++|||+|||++||+
T Consensus        76 ~~~--------------------~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~  135 (181)
T d1qp8a1          76 KEG--------------------PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDR  135 (181)
T ss_dssp             CCS--------------------SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCH
T ss_pred             ccc--------------------ceeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccc
Confidence            431                    011246899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCccEEEEeCCCCCCC-C-CCCcccCCCeEEcCCCCC
Q 020301          280 VALVEHLKQNPMFRVGLDVFEDEPY-M-KPGLSEMKNAIVVPHIAS  323 (328)
Q Consensus       280 ~aL~~aL~~g~i~gaalDV~~~EP~-~-~~~L~~~~nvilTPHia~  323 (328)
                      +||++||++|++.||++|||++||+ + ++||+++|||++|||+||
T Consensus       136 ~aL~~aL~~~~i~~aalDV~~~e~p~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         136 DGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             HHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSS
T ss_pred             hhhhhhcccCcEEEEEEecCCCCCCCCCCChHHcCCCEEeccccCc
Confidence            9999999999999999999987764 3 468999999999999997

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.93  E-value=1.3e-26  Score=189.15  Aligned_cols=128  Identities=22%  Similarity=0.280  Sum_probs=113.0

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEc
Q 020301           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (328)
Q Consensus        14 ~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (328)
                      +++|||+++++++. ..+.|++. +++.+...    .+++|+.+.+. ++|+++++..+++++++++++|+|  |+|+++
T Consensus         1 sMpkvli~~~~~~~-~~~~L~~~-~~v~~~~~----~~~~el~~~~~-~~d~ii~~~~~~i~~~~l~~~p~L--k~I~~~   71 (130)
T d1ygya2           1 SLPVVLIADKLAPS-TVAALGDQ-VEVRWVDG----PDRDKLLAAVP-EADALLVRSATTVDAEVLAAAPKL--KIVARA   71 (130)
T ss_dssp             CCCEEEECSSCCGG-GGTTSCSS-SEEEECCT----TSHHHHHHHGG-GCSEEEECSSSCBCHHHHHTCTTC--CEEEES
T ss_pred             CCCEEEEECCCCHH-HHHHHhCC-cEEEECCC----CCHHHHHHHcC-CCEEEEEcCcccchHHHHhhcccc--eEEeee
Confidence            57899999998875 35677654 57765432    47889999997 799999988889999999999988  999999


Q ss_pred             cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCC
Q 020301           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY  150 (328)
Q Consensus        94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w  150 (328)
                      |+||||||+++|+++||.|+|+||+++.+|||++++|||+++||+..+++++|+|.|
T Consensus        72 g~G~d~IDl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~  128 (130)
T d1ygya2          72 GVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVN  128 (130)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCS
T ss_pred             cccccchhHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCcc
Confidence            999999999999999999999999999999999999999999999988888888866

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1e-23  Score=172.07  Aligned_cols=123  Identities=21%  Similarity=0.148  Sum_probs=102.1

Q ss_pred             CCCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEE
Q 020301           12 PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (328)
Q Consensus        12 ~~~~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~   91 (328)
                      ++.|||||+++++++. ..+.|++.|+......  ...++++++.+.+. ++|+++++...++++++|+++|+|  |+|+
T Consensus         1 ek~kmKILv~d~i~~~-a~~~L~~~g~~~v~~~--~~~~~~~~l~~~~~-~~d~ii~~~~~~i~~~~i~~~p~L--k~I~   74 (132)
T d1sc6a2           1 EKDKIKFLLVEGVHQK-ALESLRAAGYTNIEFH--KGALDDEQLKESIR-DAHFIGLRSRTHLTEDVINAAEKL--VAIG   74 (132)
T ss_dssp             CCSSCCEEECSCCCHH-HHHHHHHTTCCCEEEC--SSCCCHHHHHHHTT-SCSEEEECSSCCBCHHHHHHCSSC--CEEE
T ss_pred             CCCCCEEEEECCCCHH-HHHHHHhCCCEEEEeC--CCCCCHHHHHHhhc-CCcEEEEecccccChhhhhccccc--eeEE
Confidence            3578999999999864 4788998886543222  23568899999997 799999988889999999999988  9999


Q ss_pred             EccccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHH
Q 020301           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEAD  142 (328)
Q Consensus        92 ~~g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~  142 (328)
                      ++|+||||||+++|+++||.|+|+||+++.+|||++++||+  .|+....+
T Consensus        75 ~~gvG~D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~--~~~~~~~d  123 (132)
T d1sc6a2          75 AFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVA--GKLIKYSD  123 (132)
T ss_dssp             ECSSCCTTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHH--HHHHHHHH
T ss_pred             EecccccccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHH--HHhhHHHh
Confidence            99999999999999999999999999999999998665554  44443334

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.88  E-value=1.7e-23  Score=170.67  Aligned_cols=122  Identities=16%  Similarity=0.253  Sum_probs=97.5

Q ss_pred             eEEEEeCCCCc-hHHHHHH-HhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEc
Q 020301           16 YRVVSTKPMPG-TRWINLL-IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (328)
Q Consensus        16 ~~vlv~~~~~~-~~~~~~l-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (328)
                      |||++....+. .++++.+ ++.++++......   . .++..+.+. ++|+|++....++++++++++|+.++|+|+++
T Consensus         1 MKIl~~~~~~~e~~~l~~~~~~~~~~v~~~~~~---~-~~~~~~~~~-~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~   75 (131)
T d1dxya2           1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEF---L-DENTVEWAK-GFDGINSLQTTPYAAGVFEKMHAYGIKFLTIR   75 (131)
T ss_dssp             CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSC---C-CTTGGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEES
T ss_pred             CEEEEEecCcCcHHHHHHHHHHcCeEEEEcCCC---C-CHHHHHHhc-CCCEEEEecCCCCCHHHHhhcccCCeEEEEEc
Confidence            68888654333 2334444 4557777654321   2 245566665 79999998888999999999987777999999


Q ss_pred             cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHH
Q 020301           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEAD  142 (328)
Q Consensus        94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~  142 (328)
                      |+||||||+++|+++||.|+|+|++++++|||+++++||++.|++...+
T Consensus        76 ~vG~d~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~~  124 (131)
T d1dxya2          76 NVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGE  124 (131)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             ccccccccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHHH
Confidence            9999999999999999999999999999999999999999999986543

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.87  E-value=4.2e-22  Score=161.91  Aligned_cols=116  Identities=20%  Similarity=0.351  Sum_probs=98.9

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhh-ccCCceEEEc
Q 020301           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALS-RAGGKAFSNM   93 (328)
Q Consensus        15 ~~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~-~l~~k~i~~~   93 (328)
                      |+|||++.++++. ..+.|++. ++++. ...+...+.+|+.+.++ ++|+++++...++++++++++| +|  |+|+++
T Consensus         1 K~kVlit~~~~~~-~~~~l~~~-~~v~~-~~~~~~~s~~el~~~~~-~~d~ii~~~~~~i~~~~l~~~~~~L--K~I~~~   74 (129)
T d1gdha2           1 KKKILITWPLPEA-AMARARES-YDVIA-HGDDPKITIDEMIETAK-SVDALLITLNEKCRKEVIDRIPENI--KCISTY   74 (129)
T ss_dssp             CCEEEESSCCCHH-HHHHHHTT-SEEEE-CCSTTCCCHHHHHHHHT-TCSEEEEETTSCBCHHHHHHSCTTC--CEEEEE
T ss_pred             CCEEEEeCCCCHH-HHHHHHcC-CcEEE-eCCCCCCCHHHHHHHhc-CCCEEEEcCCchhhhHHHhhhhhcc--eeeeec
Confidence            6899999999874 46788764 57764 33445679999999998 7999999888899999999997 56  999999


Q ss_pred             cccCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHh
Q 020301           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR  136 (328)
Q Consensus        94 g~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R  136 (328)
                      |+||||||+++|+++||+|+|+||+++.+|||+++++|+.+.+
T Consensus        75 gvG~d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~  117 (129)
T d1gdha2          75 SIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDA  117 (129)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999987765555554

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.85  E-value=2.5e-23  Score=167.29  Aligned_cols=121  Identities=10%  Similarity=0.092  Sum_probs=100.4

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 020301           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (328)
Q Consensus        16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~   95 (328)
                      |||+++.++|++ +.+.|++. +++.  ...+           + .++|+++++   +++++.++++|+|  |+|++.|+
T Consensus         1 Mki~v~~~lp~e-~~e~L~~~-~~v~--~~~d-----------~-~~~d~~l~~---~~~~~~l~~~~~L--k~i~~~~a   59 (121)
T d1qp8a2           1 MELYVNFELPPE-AEEELRKY-FKIV--RGGD-----------L-GNVEAALVS---RITAEELAKMPRL--KFIQVVTA   59 (121)
T ss_dssp             CEEECCSCCCHH-HHHHHHTT-CEEE--CSSC-----------C-TTBCCCCBS---CCCHHHHHHCTTC--CCEEBSSS
T ss_pred             CEEEEeCCCCHH-HHHHhhhc-ceEe--eccc-----------c-cccceeeee---ccCHHHHhcCCCc--eEEEeccc
Confidence            799999999964 56777764 4443  2221           1 257766654   6889999999998  99999999


Q ss_pred             cCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCH
Q 020301           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (328)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~  175 (328)
                      |+||+|+++++ +||.|+|++|+|+.+||||++++||++.|+                              ++|+|+|+
T Consensus        60 G~D~i~~~~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r~------------------------------l~i~G~G~  108 (121)
T d1qp8a2          60 GLDHLPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVRN------------------------------LITYATGG  108 (121)
T ss_dssp             CCTTSCCTTSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHHH------------------------------HHHHHTTS
T ss_pred             CcCCCCHHHhc-cCeEEEECCCCChHHHHHHHHHHHHHhcCC------------------------------EEEEcCCH
Confidence            99999999885 699999999999999999999999999873                              57999999


Q ss_pred             HHHHHHHHHHhcCC
Q 020301          176 IGSAYARMMVEGFK  189 (328)
Q Consensus       176 IG~~vA~~l~~~fg  189 (328)
                      ||+++|+|+ ++||
T Consensus       109 iG~~iA~r~-~a~G  121 (121)
T d1qp8a2         109 RPRNIAKRE-DYIG  121 (121)
T ss_dssp             CCSCBCCGG-GTC-
T ss_pred             HHHHHHHHH-HhcC
Confidence            999999995 8997

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.82  E-value=3e-21  Score=163.52  Aligned_cols=117  Identities=15%  Similarity=0.084  Sum_probs=100.9

Q ss_pred             HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecC--CCCccHHHHHHhhccCCceEEEccccCCccChhHHH
Q 020301           29 WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (328)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~--~~~~~~~~l~~~~~l~~k~i~~~g~G~d~id~~~~~  106 (328)
                      +.+.|++.|+++......+  .+.+++.+.+. ++|+++++.  ..++++++++++|+|  |+|+++|+|+||||+++|+
T Consensus        59 lr~~Le~~GhelV~~sd~~--~~~~el~k~l~-DADivI~~pf~~~~lt~e~i~~ap~L--KlI~~~g~G~D~VDl~aa~  133 (186)
T d2naca2          59 LRKYLESNGHTLVVTSDKD--GPDSVFERELV-DADVVISQPFWPAYLTPERIAKAKNL--KLALTAGIGSDHVDLQSAI  133 (186)
T ss_dssp             CHHHHHHTTCEEEEESCCS--STTSHHHHHHT-TCSEEEEBTTBCCCBCHHHHHHCTTC--CEEEESSSCCTTBCHHHHH
T ss_pred             HHHHHHHCCCEEEEecCCC--CChHHHHhhcc-cCCEEEEecccccccCHHHHhcCccc--eEEEEeccCCccccHHHHH
Confidence            4678999999987655433  35567888887 799999874  568999999999998  9999999999999999999


Q ss_pred             hCCceEecCCCCCCchHHHHH--------HHHHHHHHhcHHHHHHHHHcCCC
Q 020301          107 KYGIAVGNTPGVLTETTAELA--------ASLSLAAARRIVEADEFMRAGLY  150 (328)
Q Consensus       107 ~~gI~v~n~p~~~~~~vAE~a--------l~~~L~~~R~~~~~~~~~~~g~w  150 (328)
                      ++||.|+|+||+|+.+||||+        +++++...|++...+..+++|+|
T Consensus       134 e~gI~V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         134 DRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             HTTCEEEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred             hCCCEEEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence            999999999999999999999        77888888988777767777765

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.82  E-value=1.8e-20  Score=153.07  Aligned_cols=125  Identities=20%  Similarity=0.210  Sum_probs=96.4

Q ss_pred             EEEEeCCCCc-hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 020301           17 RVVSTKPMPG-TRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (328)
Q Consensus        17 ~vlv~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~   95 (328)
                      ||++-...+. ..+++.+.+..+++++...+. ..+ +++.+.+. ++|+++++...+++++++++++++++|+|++.|+
T Consensus         2 KI~~f~~~~~e~~~~e~~~~~~~~v~v~~~~~-~~~-~e~~~~~~-~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~v   78 (134)
T d1j4aa2           2 KIFAYAIREDEKPFLKEWEDAHKDVEVEYTDK-LLT-PETVALAK-GADGVVVYQQLDYIAETLQALADNGITKMSLRNV   78 (134)
T ss_dssp             EEEECSCCGGGHHHHHHHHHTCTTSEEEECSS-CCC-TTTGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSS
T ss_pred             eEEEEecccccHHHHHHHHHhCCCEEEEECCC-CCC-HHHHHHhc-CCCEEEEecCCCcCHHHHhhhcccCeeEEEEccC
Confidence            6666544333 345566655555555543332 334 56666666 7999999888899999999998877899999999


Q ss_pred             cCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCC
Q 020301           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY  150 (328)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w  150 (328)
                      ||||||+++|+++||.|+|+|++   ++||+++++||+++|++.   ..+.+|+|
T Consensus        79 G~d~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~---~~~~~~k~  127 (134)
T d1j4aa2          79 GVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNN---LELVEGKE  127 (134)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHH---HHHHTTCC
T ss_pred             CcCccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHh---HHHhhhhc
Confidence            99999999999999999999987   579999999999999864   45556654

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.80  E-value=3.4e-20  Score=150.93  Aligned_cols=124  Identities=20%  Similarity=0.254  Sum_probs=95.8

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCccEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 020301           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (328)
Q Consensus        16 ~~vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~l~~k~i~~~g~   95 (328)
                      ++|++.+..+.......|++. .++.++...    +.+|+.+.+.+++++++++...++++++++++|+|  |+|++.|+
T Consensus         2 P~v~~ld~~d~~~e~~~L~~~-~~v~~~~~~----s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~L--k~I~~~g~   74 (133)
T d1mx3a2           2 PLVALLDGRDCTVEMPILKDV-ATVAFCDAQ----STQEIHEKVLNEAVGALMYHTITLTREDLEKFKAL--RIIVRIGS   74 (133)
T ss_dssp             CEEEESSCSCCTTTHHHHTTT-CEEEECCCS----SGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSC--CEEEESSS
T ss_pred             CEEEEecCCcchhhHHHhccc-ceEEEecCC----ChHHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCC--eEEEEcCC
Confidence            566666654433235667764 466654332    34455444333588888888889999999999987  99999999


Q ss_pred             cCCccChhHHHhCCceEecCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHcCCCC
Q 020301           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD  151 (328)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~g~w~  151 (328)
                      |+||||+++|+++||.|+|+||+++ ++|||++++||+++|++++.    .+|.|.
T Consensus        75 G~d~iD~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a----~~g~~~  125 (133)
T d1mx3a2          75 GFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRA----ITGRIP  125 (133)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHH----HHSCTT
T ss_pred             CcccEeeeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHH----Hhcccc
Confidence            9999999999999999999999988 47999999999999999754    456663

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.3e-18  Score=143.88  Aligned_cols=121  Identities=21%  Similarity=0.345  Sum_probs=98.6

Q ss_pred             ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      +..|.||+++|+|||.||+.+|+++ ++|||+|++||+++...++...+.|               ...++++++..||+
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~-rg~G~~V~v~e~dp~~al~A~~dG~---------------~v~~~~~a~~~adi   82 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQAL-RGFGARVIITEIDPINALQAAMEGY---------------EVTTMDEACQEGNI   82 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHTTC---------------EECCHHHHTTTCSE
T ss_pred             CceecCCEEEEeccccccHHHHHHH-HhCCCeeEeeecccchhHHhhcCce---------------EeeehhhhhhhccE
Confidence            4579999999999999999999997 8999999999999887766544322               34689999999999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcC-CCcccCHHHHHHHHHcCCccEEEEeCCC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS-RGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a-RG~~vde~aL~~aL~~g~i~gaalDV~~  300 (328)
                      ++.+    ..++++|+.+.|++||+|++|.|++ +..-||.++|.+...+.+.....+|.|+
T Consensus        83 vvta----TGn~~vI~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~  140 (163)
T d1li4a1          83 FVTT----TGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR  140 (163)
T ss_dssp             EEEC----SSCSCSBCHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             EEec----CCCccchhHHHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEEE
Confidence            9876    4578999999999999999999986 5667999999876544433444455443

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.51  E-value=3.4e-14  Score=117.75  Aligned_cols=104  Identities=20%  Similarity=0.320  Sum_probs=88.4

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .-+.||++.|+|||.+|+.+|+++ +++|++|++++..|-..++...+.|               ...+++|+++.+|++
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~-rg~Ga~V~V~E~DPi~alqA~mdGf---------------~v~~~~~a~~~aDi~   82 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSM-KGLGARVYITEIDPICAIQAVMEGF---------------NVVTLDEIVDKGDFF   82 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHHTCEEEEECSCHHHHHHHHTTTC---------------EECCHHHHTTTCSEE
T ss_pred             ceecCCEEEEecccccchhHHHHH-HhCCCEEEEEecCchhhHHHHhcCC---------------ccCchhHccccCcEE
Confidence            468999999999999999999996 8999999999999877666544322               347999999999999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-vde~aL~~  284 (328)
                      +.+..    .+++|+.+.|.+||+|+++.|++.... ||-++|.+
T Consensus        83 vTaTG----n~~vI~~~h~~~MKdgaIl~N~GHfd~EIdv~~L~~  123 (163)
T d1v8ba1          83 ITCTG----NVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFN  123 (163)
T ss_dssp             EECCS----SSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             EEcCC----CCccccHHHHHHhhCCeEEEeccccchhhhhHHHHh
Confidence            98865    467899999999999999999988765 67766654

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.35  E-value=6.4e-13  Score=110.62  Aligned_cols=111  Identities=18%  Similarity=0.219  Sum_probs=90.8

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl  246 (328)
                      +|||||+|.||+.+|++|+ .-|.+|++||++++.. +++.        +.+     .....+.+|++++||+|++|+|.
T Consensus         2 kIgiIGlG~MG~~~A~~L~-~~G~~V~~~d~~~~~~-~~~~--------~~~-----~~~~~~~~e~~~~~d~ii~~v~~   66 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLL-KAGYSLVVSDRNPEAI-ADVI--------AAG-----AETASTAKAIAEQCDVIITMLPN   66 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHHH-HHHH--------HTT-----CEECSSHHHHHHHCSEEEECCSS
T ss_pred             EEEEEehhHHHHHHHHHHH-HCCCeEEEEeCCcchh-HHHH--------Hhh-----hhhcccHHHHHhCCCeEEEEcCC
Confidence            6999999999999999985 6799999999987642 2221        112     22457899999999999999998


Q ss_pred             Chhhhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          247 DKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       247 t~~t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      .++.+.++.  ...+..+++|.++||++....-....+.+.+++..+.
T Consensus        67 ~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~  114 (161)
T d1vpda2          67 SPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVE  114 (161)
T ss_dssp             HHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             HHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence            888888763  4588899999999999999888888999999886553

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.26  E-value=1.9e-11  Score=101.61  Aligned_cols=141  Identities=16%  Similarity=0.110  Sum_probs=92.7

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl  246 (328)
                      +|||||+|.||+.+|+.| +.-|.+|++|||++... ++        +.+.+...    ...+..+.+++||+|++++|.
T Consensus         2 kI~iIG~G~mG~~lA~~l-~~~g~~V~~~d~~~~~~-~~--------a~~~~~~~----~~~~~~~~~~~~DiIilavp~   67 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDL-RRRGHYLIGVSRQQSTC-EK--------AVERQLVD----EAGQDLSLLQTAKIIFLCTPI   67 (165)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HH--------HHHTTSCS----EEESCGGGGTTCSEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHH-HHCCCEEEEEECCchHH-HH--------HHHhhccc----eeeeecccccccccccccCcH
Confidence            699999999999999997 67899999999986532 11        11122111    112334678999999999993


Q ss_pred             ChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCC--CCCCcccCCCeEEcCCCCCC
Q 020301          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPHIASA  324 (328)
Q Consensus       247 t~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~--~~~~L~~~~nvilTPHia~~  324 (328)
                       .++..++ ++....+++++++++++....-.... .+.+....+..-.+...+...+  ..+.|+.-..+++||+-++.
T Consensus        68 -~~~~~vl-~~l~~~l~~~~iv~~~~s~~~~~~~~-~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~  144 (165)
T d2f1ka2          68 -QLILPTL-EKLIPHLSPTAIVTDVASVKTAIAEP-ASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTD  144 (165)
T ss_dssp             -HHHHHHH-HHHGGGSCTTCEEEECCSCCHHHHHH-HHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCC
T ss_pred             -hhhhhhh-hhhhhhcccccceeeccccchHHHHH-HHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCC
Confidence             4677777 56778899999999997655333333 3344433333333322222211  12457777889999987654

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.24  E-value=8e-12  Score=103.93  Aligned_cols=116  Identities=20%  Similarity=0.246  Sum_probs=92.5

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      ++|||||+|.||..+|++|+ .-|.+|.+||++++.. +...        ..     +.....++.|++..+|+|++|+|
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~-~~g~~v~~~d~~~~~~-~~~~--------~~-----~~~~~~~~~e~~~~~diii~~v~   66 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLL-KAGYLLNVFDLVQSAV-DGLV--------AA-----GASAARSARDAVQGADVVISMLP   66 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSSHHHH-HHHH--------HT-----TCEECSSHHHHHTSCSEEEECCS
T ss_pred             CEEEEEEEHHHHHHHHHHHH-HCCCeEEEEECchhhh-hhhh--------hh-----hccccchhhhhccccCeeeeccc
Confidence            57999999999999999985 6799999999987642 2211        11     12334689999999999999999


Q ss_pred             CChhhhcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeC
Q 020301          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV  298 (328)
Q Consensus       246 lt~~t~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV  298 (328)
                      ..+..+.++.  ...+..+++|.++||++....-+...+.+.+++..+  ..+|.
T Consensus        67 ~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi--~~~da  119 (162)
T d3cuma2          67 ASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGL--AMLDA  119 (162)
T ss_dssp             CHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTC--EEEEC
T ss_pred             chhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCC--cEEec
Confidence            8888777653  457888999999999999998888999999988655  44554

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.23  E-value=4.8e-11  Score=99.39  Aligned_cols=143  Identities=16%  Similarity=0.101  Sum_probs=99.8

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHH-HhhcCCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDiV~l  242 (328)
                      |+|+|||+|.||.++|+.| +..|  .+|++||+++.....         +...+....   ...+.++ ....+|+|++
T Consensus         2 k~I~IIG~G~mG~sla~~L-~~~g~~~~I~~~D~~~~~~~~---------a~~~~~~~~---~~~~~~~~~~~~~dlIil   68 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESISK---------AVDLGIIDE---GTTSIAKVEDFSPDFVML   68 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHHHH---------HHHTTSCSE---EESCGGGGGGTCCSEEEE
T ss_pred             CEEEEEccCHHHHHHHHHH-HhcCCCeEEEEEECChHHHHH---------HHHhhcchh---hhhhhhhhhccccccccc
Confidence            5799999999999999997 4444  689999998654311         112222111   1233333 3457999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCC--CCCCcccCCCeEEcCC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPH  320 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~--~~~~L~~~~nvilTPH  320 (328)
                      |+| ..++..++ ++....+++++++++++.....-.+++.+.+...-+.+--+...+....  ....|++-.++++|||
T Consensus        69 a~p-~~~~~~vl-~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~  146 (171)
T d2g5ca2          69 SSP-VRTFREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPT  146 (171)
T ss_dssp             CSC-HHHHHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCC
T ss_pred             cCC-chhhhhhh-hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecC
Confidence            999 23455555 5567789999999999987666667777778776666767766554422  2346899899999999


Q ss_pred             CCC
Q 020301          321 IAS  323 (328)
Q Consensus       321 ia~  323 (328)
                      -..
T Consensus       147 ~~~  149 (171)
T d2g5ca2         147 KKT  149 (171)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.11  E-value=8.3e-11  Score=98.92  Aligned_cols=119  Identities=13%  Similarity=0.189  Sum_probs=89.9

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      ++|||||+|.||..+|++|+ .-|.+|++|||++++. +++.+...     ......+.....++.+.+..+|.+++++|
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~-~~G~~V~v~dr~~~~~-~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~ii~~~~   75 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMN-DHGFVVCAFNRTVSKV-DDFLANEA-----KGTKVLGAHSLEEMVSKLKKPRRIILLVK   75 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSTHHH-HHHHHTTT-----TTSSCEECSSHHHHHHHBCSSCEEEECSC
T ss_pred             CcEEEEeEhHHHHHHHHHHH-HCCCeEEEEcCCHHHH-HHHHHhcc-----ccccccchhhhhhhhhhhcccceEEEecC
Confidence            57999999999999999985 5699999999998543 22221100     00111122223456677888999999999


Q ss_pred             CChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       246 lt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      ..+++...+ ...+..+++|.++||++....-+...+.+.+.+..+.
T Consensus        76 ~~~~v~~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~  121 (176)
T d2pgda2          76 AGQAVDNFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL  121 (176)
T ss_dssp             TTHHHHHHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             chHHHHHHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCc
Confidence            988888855 6788999999999999999999989999999886543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.91  E-value=1.5e-09  Score=89.96  Aligned_cols=104  Identities=17%  Similarity=0.333  Sum_probs=77.4

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      .+...++.|||.|..|.+-++. ++++|++|.++|.+... +++..+.|+...      .........+++.+++||+|+
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~-A~~lGA~V~~~D~~~~~-l~~l~~~~~~~~------~~~~~~~~~l~~~~~~aDivI  100 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKM-AVGLGAQVQIFDINVER-LSYLETLFGSRV------ELLYSNSAEIETAVAEADLLI  100 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHH-HHHTTCEEEEEESCHHH-HHHHHHHHGGGS------EEEECCHHHHHHHHHTCSEEE
T ss_pred             CCCCcEEEEECCChHHHHHHHH-HhhCCCEEEEEeCcHHH-HHHHHHhhcccc------eeehhhhhhHHHhhccCcEEE
Confidence            3677899999999999999998 48999999999998753 333333332111      111112236789999999996


Q ss_pred             EcCC-CChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          242 LHPV-LDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       242 l~~p-lt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .++- -...+..+|.++.++.||||+++||++=
T Consensus       101 ~aalipG~~aP~lIt~~mv~~Mk~GSVIVDvai  133 (168)
T d1pjca1         101 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  133 (168)
T ss_dssp             ECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             EeeecCCcccCeeecHHHHhhcCCCcEEEEeec
Confidence            6542 2456789999999999999999999963

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.84  E-value=2.3e-08  Score=81.70  Aligned_cols=101  Identities=17%  Similarity=0.274  Sum_probs=76.9

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl  246 (328)
                      ++||||+|+||+++++.| ..-|.++++|+|+.+.. ++..+.|       +     .....+.+++++.||+|+++++ 
T Consensus         2 kIg~IG~G~mG~al~~~l-~~~~~~i~v~~r~~~~~-~~l~~~~-------g-----~~~~~~~~~~~~~~dvIilavk-   66 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGL-KQTPHELIISGSSLERS-KEIAEQL-------A-----LPYAMSHQDLIDQVDLVILGIK-   66 (152)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTSSCEEEEECSSHHHH-HHHHHHH-------T-----CCBCSSHHHHHHTCSEEEECSC-
T ss_pred             EEEEEeccHHHHHHHHHH-HhCCCeEEEEcChHHhH-Hhhcccc-------c-----eeeechhhhhhhccceeeeecc-
Confidence            699999999999999997 46689999999986542 2222222       2     1234689999999999999997 


Q ss_pred             ChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       247 t~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                       |+..    ++.++.++++..+|+++-|  +..+.|.+.|..+
T Consensus        67 -p~~~----~~vl~~l~~~~~iis~~ag--i~~~~l~~~l~~~  102 (152)
T d2ahra2          67 -PQLF----ETVLKPLHFKQPIISMAAG--ISLQRLATFVGQD  102 (152)
T ss_dssp             -GGGH----HHHHTTSCCCSCEEECCTT--CCHHHHHHHHCTT
T ss_pred             -hHhH----HHHhhhcccceeEeccccc--ccHHHHHhhhccc
Confidence             4321    5667889999999999876  5677788887543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.83  E-value=2.8e-09  Score=86.87  Aligned_cols=83  Identities=14%  Similarity=0.232  Sum_probs=67.4

Q ss_pred             cCCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       163 l~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      ..-++|+||| +|.||+.+|+.| +.-|.+|.+||+....                           ..++.++.+|+++
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L-~~~G~~V~~~d~~~~~---------------------------~~~~~~~~~~~v~   58 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYL-RASGYPISILDREDWA---------------------------VAESILANADVVI   58 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHH-HTTTCCEEEECTTCGG---------------------------GHHHHHTTCSEEE
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHH-HHcCCCcEeccccccc---------------------------ccchhhhhccccc
Confidence            4557899999 999999999998 6789999999987542                           3456788999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      +++|. ..+.. +-.+.+..+++++++++++.-.
T Consensus        59 ~~~~~-~~~~~-v~~~~~~~~~~~~iiiD~~Svk   90 (152)
T d2pv7a2          59 VSVPI-NLTLE-TIERLKPYLTENMLLADLTSVK   90 (152)
T ss_dssp             ECSCG-GGHHH-HHHHHGGGCCTTSEEEECCSCC
T ss_pred             cccch-hhhee-eeecccccccCCceEEEecccC
Confidence            99993 33333 4577888999999999998744

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.80  E-value=4e-09  Score=86.58  Aligned_cols=112  Identities=20%  Similarity=0.239  Sum_probs=82.1

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl  246 (328)
                      +|||||+|+||..+|++|. .-|..+ +|+++..+.. +..+..       +      .. .+..+.+.++|++++++|.
T Consensus         2 kIg~IGlG~MG~~ma~~L~-~~g~~~-~~~~~~~~~~-~~~~~~-------~------~~-~~~~~~~~~~~~~i~~~~~   64 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLA-RRFPTL-VWNRTFEKAL-RHQEEF-------G------SE-AVPLERVAEARVIFTCLPT   64 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHH-TTSCEE-EECSSTHHHH-HHHHHH-------C------CE-ECCGGGGGGCSEEEECCSS
T ss_pred             eEEEEeHHHHHHHHHHHHH-hCCCEE-EEeCCHHHHH-HHHHHc-------C------Cc-ccccccccceeEEEecccc
Confidence            6999999999999999985 456655 5666654332 211111       1      11 2334566789999999998


Q ss_pred             ChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeC
Q 020301          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV  298 (328)
Q Consensus       247 t~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV  298 (328)
                      .++.... ....+..++++.++||++....-....+.+.+++..+.  .+|.
T Consensus        65 ~~~v~~~-~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~--~lda  113 (156)
T d2cvza2          65 TREVYEV-AEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVT--YLDA  113 (156)
T ss_dssp             HHHHHHH-HHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE--EEEC
T ss_pred             hhhhhhh-hccccccccccccccccccCCHHHHHHHHHHHHHcCCe--EEec
Confidence            7776664 46788999999999999999998889999999976543  4453

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.78  E-value=5.5e-09  Score=85.30  Aligned_cols=104  Identities=10%  Similarity=0.014  Sum_probs=73.6

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl  246 (328)
                      +|||||+|.||+.+|+.|+ .-|.+|++||+.+.+........              .....+++|++++||+|++|+|.
T Consensus         2 kIgiIG~G~mG~~ia~~l~-~~g~~v~~~~~~~~~~~~~~~~~--------------~~~~~~~~e~~~~~diIi~~v~~   66 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLR-SRGVEVVTSLEGRSPSTIERART--------------VGVTETSEEDVYSCPVVISAVTP   66 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHH-HTTCEEEECCTTCCHHHHHHHHH--------------HTCEECCHHHHHTSSEEEECSCG
T ss_pred             EEEEEcHHHHHHHHHHHHH-HCCCeEEEEcCchhHHHHHhhhc--------------ccccccHHHHHhhcCeEEEEecC
Confidence            6999999999999999984 66999999998765432221111              11234788999999999999995


Q ss_pred             ChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       247 t~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      .. ....+ .+....  .+.++|+++....-....+.+.+++.
T Consensus        67 ~~-~~~~~-~~~~~~--~~~~~id~st~~p~~~~~l~~~~~~~  105 (152)
T d1i36a2          67 GV-ALGAA-RRAGRH--VRGIYVDINNISPETVRMASSLIEKG  105 (152)
T ss_dssp             GG-HHHHH-HHHHTT--CCSEEEECSCCCHHHHHHHHHHCSSS
T ss_pred             ch-HHHHH-Hhhccc--CCceeeccCcCCHHHHHHHHHHHhcc
Confidence            43 33322 222222  36789999888777777888877654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.71  E-value=1.7e-08  Score=84.23  Aligned_cols=127  Identities=17%  Similarity=0.210  Sum_probs=89.2

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHH---HHhhcCCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD---EVLREADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---ell~~aDiV~l  242 (328)
                      .+|||||+|.||..+|++|+ .-|.+|++|||++++. +++.+.+...    . .........+.+   ..+..++.+..
T Consensus         2 MkIGvIGlG~MG~~ma~~L~-~~G~~V~~~dr~~~~~-~~l~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIA-EKGFKVAVFNRTYSKS-EEFMKANASA----P-FAGNLKAFETMEAFAASLKKPRKALI   74 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSHHHH-HHHHHHTTTS----T-TGGGEEECSCHHHHHHHBCSSCEEEE
T ss_pred             CEEEEEeehHHHHHHHHHHH-HCCCeEEEEECCHHHH-HHHHHcCCcc----c-cccchhhhhhhhHHHHhcccceEEEE
Confidence            36999999999999999985 6799999999987643 2222221100    0 000111123333   44568899999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~  300 (328)
                      +++........+ ......++++.++||++....-+...+.+.|.+..+...-.-|+.
T Consensus        75 ~~~~~~~~~~~~-~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g  131 (178)
T d1pgja2          75 LVQAGAATDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG  131 (178)
T ss_dssp             CCCCSHHHHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEES
T ss_pred             eecCcchhhhhh-hhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccC
Confidence            999777777666 466778899999999999999999999999987766544333443

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.64  E-value=3.6e-08  Score=82.67  Aligned_cols=108  Identities=20%  Similarity=0.251  Sum_probs=72.3

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcC------CCCC----------cccc
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN------GEQP----------VTWK  225 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~------~~~~----------~~~~  225 (328)
                      .+...+|.|||.|..|..-++. ++++|++|.++|.+.... ++....++.+..-.      ....          ....
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~-A~~lGA~V~v~D~~~~~~-~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~  103 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIAT-AKRLGAVVMATDVRAATK-EQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKK  103 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHH-HHHTTCEEEEECSCSTTH-HHHHHTTCEECCC-----------------------CC
T ss_pred             CcCCcEEEEEcCcHHHHHHHHH-HHHcCCEEEEEeccHHHH-HHHHHhhcceEEEeccccccccccccchhhcCHHHHHH
Confidence            3566799999999999999998 589999999999887532 22212111111000      0000          0000


Q ss_pred             ccCCHHHHhhcCCEEEE--cCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          226 RASSMDEVLREADVISL--HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       226 ~~~~l~ell~~aDiV~l--~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      ....+.+.+++||+|+.  .+| ...+..+|+++.++.||||+++|+++
T Consensus       104 ~~~~l~~~l~~aDlVI~talip-G~~aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         104 QAEAVLKELVKTDIAITTALIP-GKPAPVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCT-TSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHHHHHhhhhheeeeecC-CcccceeehHHHHHhcCCCcEEEEEe
Confidence            11235567889999964  455 34467899999999999999999995

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.60  E-value=1.6e-07  Score=77.73  Aligned_cols=120  Identities=15%  Similarity=0.204  Sum_probs=78.0

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh-cCCCC--CccccccCCHHHHhhcCCEEE
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQ--PVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~l~ell~~aDiV~  241 (328)
                      .||++|||.|.+|..+|..|+ ..|.+|.+||+++... +...+ .+.... ..+..  ........+++|.++.||+|+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~-~~G~~V~~~~r~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~ii   77 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLA-LKGQSVLAWDIDAQRI-KEIQD-RGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVIL   77 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHH-HTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECccHHHHHHHHHHH-HCCCEEEEEECCHHHH-HHHHH-cCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEE
Confidence            379999999999999999984 6799999999986432 22111 000000 00000  011112357899999999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~  290 (328)
                      +++| +..++.++ ++.-..++++.+++- +-|....+..+.+.+....
T Consensus        78 i~v~-~~~~~~~~-~~i~~~l~~~~~iv~-~~g~~~~~~~~~~~~~~~~  123 (184)
T d1bg6a2          78 IVVP-AIHHASIA-ANIASYISEGQLIIL-NPGATGGALEFRKILRENG  123 (184)
T ss_dssp             ECSC-GGGHHHHH-HHHGGGCCTTCEEEE-SSCCSSHHHHHHHHHHHTT
T ss_pred             EEEc-hhHHHHHH-HHhhhccCCCCEEEE-eCCCCccHHHHHHHHHHhc
Confidence            9999 44555544 556678899998774 4454455556667776554

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.57  E-value=4.9e-08  Score=75.58  Aligned_cols=95  Identities=13%  Similarity=0.134  Sum_probs=69.5

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccc-cCCHHHHhhcCCE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADV  239 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDi  239 (328)
                      -+++||++.|||.|.+|.+-|+.| ..+|++|+++++...+....+.+       ...   ..+.. ..+ ++.+..+++
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~l-l~~ga~v~v~~~~~~~~~~~~~~-------~~~---i~~~~~~~~-~~dl~~~~l   75 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLL-LEAGARLTVNALTFIPQFTVWAN-------EGM---LTLVEGPFD-ETLLDSCWL   75 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHH-HHTTBEEEEEESSCCHHHHHHHT-------TTS---CEEEESSCC-GGGGTTCSE
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeccCChHHHHHHh-------cCC---ceeeccCCC-HHHhCCCcE
Confidence            579999999999999999999997 68999999999988765543321       111   11111 122 345778899


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      |+.+..     .+.+|++..+.+|+..++||++
T Consensus        76 v~~at~-----d~~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          76 AIAATD-----DDTVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             EEECCS-----CHHHHHHHHHHHHHTTCEEEET
T ss_pred             EeecCC-----CHHHHHHHHHHHHHcCCEEEeC
Confidence            887754     3346778888888999999974

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.46  E-value=4.4e-07  Score=74.56  Aligned_cols=102  Identities=15%  Similarity=0.235  Sum_probs=73.6

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .+.++++.|||.|.||+.+++.| ...|. ++.+++|+.+.. ++....|       +.   ....+.++.+.+.++|+|
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L-~~~g~~~i~v~nRt~~ka-~~l~~~~-------~~---~~~~~~~~~~~l~~~Div   88 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSL-VDRGVRAVLVANRTYERA-VELARDL-------GG---EAVRFDELVDHLARSDVV   88 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHH-HHHCCSEEEEECSSHHHH-HHHHHHH-------TC---EECCGGGHHHHHHTCSEE
T ss_pred             CcccCeEEEECCCHHHHHHHHHH-HhcCCcEEEEEcCcHHHH-HHHHHhh-------hc---ccccchhHHHHhccCCEE
Confidence            58999999999999999999997 56787 699999986532 2222222       11   122346788899999999


Q ss_pred             EEcCCCChhhhccccHHHHhcC------CCCcEEEEcCCCcccC
Q 020301          241 SLHPVLDKTTYHLINKERLATM------KKEAILVNCSRGPVID  278 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~m------k~ga~lIN~aRG~~vd  278 (328)
                      +.|.+   ....+|+++.++..      ++..++|+.|...-||
T Consensus        89 i~ats---s~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr~vd  129 (159)
T d1gpja2          89 VSATA---APHPVIHVDDVREALRKRDRRSPILIIDIANPRDVE  129 (159)
T ss_dssp             EECCS---SSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSCSBC
T ss_pred             EEecC---CCCccccHhhhHHHHHhcccCCCeEEEeecCCCCcC
Confidence            99965   55677888877532      2445899988654443

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.43  E-value=8.9e-07  Score=75.44  Aligned_cols=107  Identities=23%  Similarity=0.288  Sum_probs=79.6

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-cCCEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV  240 (328)
                      +|.|+|++|-|||++|+.+|+.| ..+|++|+++|.+.......  ..       .+     . ...+.++++. .||++
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L-~~~Gakvvv~d~d~~~~~~~--~~-------~g-----~-~~~~~~~~~~~~~DI~   87 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLA-AEAGAQLLVADTDTERVAHA--VA-------LG-----H-TAVALEDVLSTPCDVF   87 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH--HH-------TT-----C-EECCGGGGGGCCCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEecchHHHHHHH--Hh-------hc-----c-cccCccccccccceee
Confidence            59999999999999999999997 68999999999876432111  11       11     1 2346677776 79999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i  291 (328)
                      +-|-     +.+.|+++..++++- .+++..+-+++.++++ -+.|++..|
T Consensus        88 iPcA-----~~~~I~~~~a~~i~a-k~i~e~AN~p~~~~~~-~~~L~~rgI  131 (201)
T d1c1da1          88 APCA-----MGGVITTEVARTLDC-SVVAGAANNVIADEAA-SDILHARGI  131 (201)
T ss_dssp             EECS-----CSCCBCHHHHHHCCC-SEECCSCTTCBCSHHH-HHHHHHTTC
T ss_pred             eccc-----ccccccHHHHhhhhh-heeeccCCCCcchhhH-HHHhcccce
Confidence            8663     468899999999974 5778888888887753 455655544

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.41  E-value=6.8e-08  Score=78.35  Aligned_cols=87  Identities=14%  Similarity=0.219  Sum_probs=56.4

Q ss_pred             EEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301          168 VGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (328)
Q Consensus       168 vgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl  246 (328)
                      +||||+|+||+.+|+.| +. +.. +.+|+|++... ++..+.+       +      ....++++++++||+|++|+|.
T Consensus         2 IgfIG~G~mg~~l~~~L-~~-~~~~~~v~~R~~~~~-~~l~~~~-------~------~~~~~~~~~~~~~DiVil~v~d   65 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECL-KD-RYEIGYILSRSIDRA-RNLAEVY-------G------GKAATLEKHPELNGVVFVIVPD   65 (153)
T ss_dssp             CEEESCCHHHHHHHHTT-C-----CCCEECSSHHHH-HHHHHHT-------C------CCCCSSCCCCC---CEEECSCT
T ss_pred             EEEEeCcHHHHHHHHHH-Hh-CCCEEEEEeCChhhh-cchhhcc-------c------ccccchhhhhccCcEEEEeccc
Confidence            79999999999999987 44 344 35899986542 2222221       1      1235778899999999999994


Q ss_pred             ChhhhccccHHHHhcC-CCCcEEEEcCCCcc
Q 020301          247 DKTTYHLINKERLATM-KKEAILVNCSRGPV  276 (328)
Q Consensus       247 t~~t~~li~~~~~~~m-k~ga~lIN~aRG~~  276 (328)
                       ++.     .+.++.+ +++.++|+++-+..
T Consensus        66 -~~i-----~~v~~~l~~~~~ivi~~s~~~~   90 (153)
T d2i76a2          66 -RYI-----KTVANHLNLGDAVLVHCSGFLS   90 (153)
T ss_dssp             -TTH-----HHHHTTTCCSSCCEEECCSSSC
T ss_pred             -hhh-----hHHHhhhcccceeeeecccchh
Confidence             232     3455666 47999999987654

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.30  E-value=1.2e-06  Score=71.04  Aligned_cols=106  Identities=19%  Similarity=0.260  Sum_probs=69.6

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl  246 (328)
                      ++||||+|+||+++++.|.+.-+.+|++|||+++.. +...+.|       +.     ....+.++ +++||+|+++++ 
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~-~~l~~~~-------~~-----~~~~~~~~-v~~~Div~lavk-   66 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKR-ERLEKEL-------GV-----ETSATLPE-LHSDDVLILAVK-   66 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHH-HHHHHHT-------CC-----EEESSCCC-CCTTSEEEECSC-
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHH-HHhhhhc-------cc-----cccccccc-ccccceEEEecC-
Confidence            699999999999999977554348999999997542 2222222       21     12234444 578999999998 


Q ss_pred             ChhhhccccHHHHhcCC-CCcEEEEcCCCcccCHHHHHHHHHc-CCccEE
Q 020301          247 DKTTYHLINKERLATMK-KEAILVNCSRGPVIDEVALVEHLKQ-NPMFRV  294 (328)
Q Consensus       247 t~~t~~li~~~~~~~mk-~ga~lIN~aRG~~vde~aL~~aL~~-g~i~ga  294 (328)
                       |+..    ++.++.++ .+..+|.+.-|-  ..+.|.+.|.. .++..+
T Consensus        67 -P~~~----~~v~~~l~~~~~~viS~~ag~--~~~~l~~~l~~~~~iir~  109 (152)
T d1yqga2          67 -PQDM----EAACKNIRTNGALVLSVAAGL--SVGTLSRYLGGTRRIVRV  109 (152)
T ss_dssp             -HHHH----HHHHTTCCCTTCEEEECCTTC--CHHHHHHHTTSCCCEEEE
T ss_pred             -HHHH----HHhHHHHhhcccEEeecccCC--CHHHHHHHhCcCcceEee
Confidence             4321    23344443 478999987774  56777777743 344444

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.27  E-value=6.2e-07  Score=74.05  Aligned_cols=96  Identities=21%  Similarity=0.263  Sum_probs=71.2

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      -|.+|+|+|||||.-|++=|..| +--|++|++--|...+..+        .++.+|.      ...+++|..++||+|.
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNL-rDSG~~V~VGLr~gs~s~~--------~A~~~Gf------~v~~~~eA~~~aDiim   77 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNL-KDSGVDVTVGLRSGSATVA--------KAEAHGL------KVADVKTAVAAADVVM   77 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHH-HHTTCCEEEECCTTCHHHH--------HHHHTTC------EEECHHHHHHTCSEEE
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhh-hhcCCCEEEEcCCCCccHH--------HHhhhcc------ccccHHHHhhhcCeee
Confidence            47899999999999999999997 6789988876554332211        1223332      3468999999999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      +.+|. +.-..++.++....||+|+.|. .++|
T Consensus        78 ~L~PD-~~q~~vy~~~I~p~lk~g~~L~-FaHG  108 (182)
T d1np3a2          78 ILTPD-EFQGRLYKEEIEPNLKKGATLA-FAHG  108 (182)
T ss_dssp             ECSCH-HHHHHHHHHHTGGGCCTTCEEE-ESCC
T ss_pred             eecch-HHHHHHHHHhhhhhcCCCcEEE-Eecc
Confidence            99993 3334567788999999998765 3444

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=3e-06  Score=71.50  Aligned_cols=130  Identities=14%  Similarity=0.131  Sum_probs=86.9

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHH--HHHHhhhhhhhhcCCCCC-------------ccccccCCH
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQP-------------VTWKRASSM  230 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l  230 (328)
                      ++|+|||.|.||+.+|..++ ..|.+|+.||+++....  .+..+..-....+.+...             .......++
T Consensus         5 kkvaViGaG~mG~~iA~~~a-~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~   83 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAA-ATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA   83 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred             EEEEEECcCHHHHHHHHHHH-hCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchh
Confidence            68999999999999999974 78999999999875321  111111101111112110             012234688


Q ss_pred             HHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCC
Q 020301          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (328)
Q Consensus       231 ~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~  299 (328)
                      .+.++.||+|+=++|-+.+.+.-+-++.=+.++++++|...+.+  +.-..|.+++.. +=+..++=-|
T Consensus        84 ~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hff  149 (192)
T d1f0ya2          84 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATTR-QDRFAGLHFF  149 (192)
T ss_dssp             HHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSSC-GGGEEEEEEC
T ss_pred             HhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcc--cccchhhhhccC-HhHEEeeccc
Confidence            89999999999999988888876767666778999988876554  445567666654 3344555444

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.06  E-value=5.4e-06  Score=70.61  Aligned_cols=99  Identities=21%  Similarity=0.165  Sum_probs=66.4

Q ss_pred             ccCC-CEEEEEecCHHHHHHHHHHHhc------CCcEEEEE-cCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH
Q 020301          162 LLKG-QTVGVIGAGRIGSAYARMMVEG------FKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (328)
Q Consensus       162 ~l~g-~tvgIiG~G~IG~~vA~~l~~~------fg~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (328)
                      .+.| |+|+|||||.-|++=|..| +-      .|.+|.+- .+......         .++.+|...... ...+.+|+
T Consensus        40 ~~kg~KkIaViGYGsQG~AhAlNL-rDSG~~~~sgv~V~VGLr~gs~S~~---------kA~~dGf~v~~~-~v~~v~EA  108 (226)
T d1qmga2          40 AFKGIKQIGVIGWGSQAPAQAQNL-KDSLTEAKSDVVVKIGLRKGSNSFA---------EARAAGFSEENG-TLGDMWET  108 (226)
T ss_dssp             HTTTCSEEEEECCSSHHHHHHHHH-HHHHHHTTCCCEEEEEECTTCSCHH---------HHHHTTCCGGGT-CEEEHHHH
T ss_pred             HhcCCCEEEEEEeccHHHHHHHhC-hhhcccccCCceEEEEeCCCChhHH---------HHHHcCCccCCC-cccCHHHH
Confidence            3678 9999999999999999997 44      56776544 32222111         123344432211 23478899


Q ss_pred             hhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       234 l~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      .++||+|.+.+|..-+ ..+. ++....||+|+.|.= |.|
T Consensus       109 v~~ADiVmiLlPDe~Q-~~vy-~~I~p~Lk~G~~L~F-aHG  146 (226)
T d1qmga2         109 ISGSDLVLLLISDSAQ-ADNY-EKVFSHMKPNSILGL-SHG  146 (226)
T ss_dssp             HHTCSEEEECSCHHHH-HHHH-HHHHHHSCTTCEEEE-SSS
T ss_pred             HhhCCEEEEecchHHH-HHHH-HHHHHhcCCCceeee-cch
Confidence            9999999999994333 3455 478899999997753 344

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.01  E-value=5.4e-06  Score=69.42  Aligned_cols=130  Identities=18%  Similarity=0.195  Sum_probs=83.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHh-hhhhhhhcCCCCCcc-------ccccCCHHHHhh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT-AYGQFLKANGEQPVT-------WKRASSMDEVLR  235 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~--~~~~-~~~~~~~~~~~~~~~-------~~~~~~l~ell~  235 (328)
                      ++|+|||.|.||+.+|..++ ..|++|..||++++....  ++.. .+..........+..       .....++ +.+.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a-~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~   82 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSA-SKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG   82 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHH-HTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc-cccc
Confidence            57999999999999999874 779999999998753211  1111 111111111111000       1112233 3478


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCC
Q 020301          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~  300 (328)
                      .||+|+=++|-+.+.+.-+-++.-+.++++++|...+.+  +....|.++++. .=+..++=.|.
T Consensus        83 ~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~--l~i~~la~~~~~-p~r~~g~Hf~n  144 (186)
T d1wdka3          83 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST--ISISLLAKALKR-PENFVGMHFFN  144 (186)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHGGGCSC-GGGEEEEECCS
T ss_pred             ccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEecccc--ccHHHHHHhccC-chheEeecccc
Confidence            999999999999888887778888889999999887665  444667666653 33344444443

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.01  E-value=3.1e-06  Score=71.23  Aligned_cols=108  Identities=15%  Similarity=0.185  Sum_probs=67.5

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh-cCCC-CCccccccCCHHHHhhcCCEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGE-QPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~ell~~aDiV  240 (328)
                      +.-++|+|||.|..|.++|..|+ .-|-+|..|+|+++.. +. ....+...+ -.+. .+.......+++++++.||+|
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La-~~g~~V~l~~r~~~~~-~~-i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~i   81 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLS-KKCREVCVWHMNEEEV-RL-VNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEII   81 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHH-TTEEEEEEECSCHHHH-HH-HHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCE
T ss_pred             ceeceEEEECCCHHHHHHHHHHH-HcCCeEEEEEecHHHH-HH-HhhcccccccccccccccccccchhhhhccCCCCEE
Confidence            34467999999999999999974 6688999999875421 11 110000000 0011 122233446899999999999


Q ss_pred             EEcCCCChhhhccccHHH----HhcCCCCcEEEEcCCC
Q 020301          241 SLHPVLDKTTYHLINKER----LATMKKEAILVNCSRG  274 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~----~~~mk~ga~lIN~aRG  274 (328)
                      ++++| +...+.++.+-.    ....+++..+|+++-|
T Consensus        82 iiavP-s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          82 LFVIP-TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             EECSC-HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             EEcCc-HHHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            99999 344444442210    1123567789998877

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.99  E-value=1.5e-05  Score=66.14  Aligned_cols=107  Identities=20%  Similarity=0.220  Sum_probs=65.8

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhh-hcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL-KANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      .+|+|||.|.+|..+|..|+ .-|-+|..|.|..++..-+......... ..............+++++++.||+|++++
T Consensus         1 MkI~ViGaG~~GtalA~~la-~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~av   79 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLV-DNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV   79 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHH-HHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhccc
Confidence            37999999999999999985 5578999998865432211111000000 000011111223468899999999999999


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcCCCcc
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~  276 (328)
                      | +...+.++ ++....+++. .+|.++.|..
T Consensus        80 p-s~~~~~~~-~~l~~~l~~~-~ii~~tkg~~  108 (180)
T d1txga2          80 S-TDGVLPVM-SRILPYLKDQ-YIVLISKGLI  108 (180)
T ss_dssp             C-GGGHHHHH-HHHTTTCCSC-EEEECCCSEE
T ss_pred             c-hhhhHHHH-Hhhccccccc-eecccccCcc
Confidence            9 44555554 3345555655 5666667654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=4.2e-06  Score=62.02  Aligned_cols=71  Identities=23%  Similarity=0.168  Sum_probs=48.4

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      ++.||++.|+|+|..|+++|+.| ...|++|+++|....+...+.       +.. +. .  ......-++.+.+.|+|+
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L-~~~g~~v~~~D~~~~~~~~~~-------~~~-~~-~--~~~~~~~~~~~~~~d~vi   69 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFF-LARGVTPRVMDTRMTPPGLDK-------LPE-AV-E--RHTGSLNDEWLMAADLIV   69 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHH-HHTTCCCEEEESSSSCTTGGG-------SCT-TS-C--EEESBCCHHHHHHCSEEE
T ss_pred             CcCCCEEEEEeECHHHHHHHHHH-HHCCCEEEEeeCCcCchhHHH-------Hhh-cc-c--eeecccchhhhccCCEEE
Confidence            57899999999999999999997 689999999998765322111       111 10 1  111111256678899998


Q ss_pred             EcC
Q 020301          242 LHP  244 (328)
Q Consensus       242 l~~  244 (328)
                      +.-
T Consensus        70 ~SP   72 (93)
T d2jfga1          70 ASP   72 (93)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            763

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=8.5e-06  Score=65.85  Aligned_cols=97  Identities=9%  Similarity=0.086  Sum_probs=65.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCC--CCccccccCCHHHHhhcCCEEEEc
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .+|+|||.|.||..+|..|+ .-|.+|..++|.......         ....+.  .........+..+.+..+|+|+++
T Consensus         1 MkI~IiGaG~iG~~~a~~L~-~~G~~V~~~~r~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~   70 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALC-KQGHEVQGWLRVPQPYCS---------VNLVETDGSIFNESLTANDPDFLATSDLLLVT   70 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSSCCSEEE---------EEEECTTSCEEEEEEEESCHHHHHTCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHH-HCCCceEEEEcCHHHhhh---------hccccCCccccccccccchhhhhcccceEEEe
Confidence            37999999999999999984 679999999998653210         000011  111111123456778899999999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      ++ ..++...+ +.....+++++.++...-|
T Consensus        71 vk-a~~~~~~~-~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          71 LK-AWQVSDAV-KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             SC-GGGHHHHH-HHHHTTSCTTSCEEEECSS
T ss_pred             ec-ccchHHHH-HhhccccCcccEEeeccCc
Confidence            99 35666543 4455667788888887666

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=3.1e-05  Score=63.40  Aligned_cols=78  Identities=15%  Similarity=0.141  Sum_probs=64.7

Q ss_pred             ccccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      +.++.||++.|||-+. +|+.+|.+| ..-|++|+.++.+.                            .++.+.+++||
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL-~~~gatVt~~h~~t----------------------------~~l~~~~~~AD   82 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMEL-LLAGCTTTVTHRFT----------------------------KNLRHHVENAD   82 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHH-HTTTCEEEEECSSC----------------------------SCHHHHHHHCS
T ss_pred             CcccccceEEEEeccccccHHHHHHH-HHhhcccccccccc----------------------------chhHHHHhhhh
Confidence            3579999999999998 899999997 57899999886532                            36788899999


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      +|+.++..    .++|..+.   +|+|+++||++-
T Consensus        83 ivI~a~G~----p~~i~~~~---vk~g~vvIDvGi  110 (166)
T d1b0aa1          83 LLIVAVGK----PGFIPGDW---IKEGAIVIDVGI  110 (166)
T ss_dssp             EEEECSCC----TTCBCTTT---SCTTCEEEECCC
T ss_pred             HhhhhccC----cccccccc---cCCCcEEEecCc
Confidence            99999873    46677654   589999999964

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.87  E-value=4.3e-05  Score=64.39  Aligned_cols=116  Identities=12%  Similarity=0.101  Sum_probs=71.3

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhh--------hhhhhcCCCCCccccccCCHHHHhhcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREA  237 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (328)
                      .+|+|||+|.+|..+|..|+ ..|.+|++||.+... .+..-...        ...+.. ...........++++.++.|
T Consensus         1 MkI~ViGlG~vGl~~a~~la-~~g~~V~g~D~n~~~-i~~ln~g~~p~~e~~~~~~l~~-~~~~~~~~~~~~~~~~i~~~   77 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLS-ARGHEVIGVDVSSTK-IDLINQGKSPIVEPGLEALLQQ-GRQTGRLSGTTDFKKAVLDS   77 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHH-HHHHHTTCCSSCCTTHHHHHHH-HHHTTCEEEESCHHHHHHTC
T ss_pred             CEEEEECCCHhHHHHHHHHH-hCCCcEEEEeCCHHH-HHHhcccCCcccchhhhhhhhh-hhcccccccCCCHHHHHhhC
Confidence            36999999999999999985 779999999987542 11110000        000000 00000112346889999999


Q ss_pred             CEEEEcCCCChhh----------hcccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 020301          238 DVISLHPVLDKTT----------YHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEH  285 (328)
Q Consensus       238 DiV~l~~plt~~t----------~~li~--~~~~~~mk~ga~lIN~aRG~~vde~aL~~a  285 (328)
                      |++++|+| ||..          ...++  ...++..+++..+|.-|.-.+=-.+.+...
T Consensus        78 d~i~i~Vp-TP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~  136 (202)
T d1mv8a2          78 DVSFICVG-TPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIP  136 (202)
T ss_dssp             SEEEECCC-CCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHH
T ss_pred             CEEEEecC-ccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhh
Confidence            99999999 4321          11121  234566778999999888666555554443

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.75  E-value=2.7e-05  Score=60.92  Aligned_cols=77  Identities=12%  Similarity=0.222  Sum_probs=52.4

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCc-c-ccccCCHHHH-hhcCCEEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-T-WKRASSMDEV-LREADVISL  242 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~el-l~~aDiV~l  242 (328)
                      |++.|+|+|++|+.+|+.| ...|.+|+++|.++... ++        +.+.+.... + ......|+++ +.+||.+++
T Consensus         1 k~~iIiG~G~~G~~la~~L-~~~g~~vvvid~d~~~~-~~--------~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~   70 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKEL-HRMGHEVLAVDINEEKV-NA--------YASYATHAVIANATEENELLSLGIRNFEYVIV   70 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HHTTCCCEEEESCHHHH-HH--------TTTTCSEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-HHCCCeEEEecCcHHHH-HH--------HHHhCCcceeeecccchhhhccCCccccEEEE
Confidence            5789999999999999997 68899999999987542 11        122222111 1 1122345555 889999999


Q ss_pred             cCCCChhhhc
Q 020301          243 HPVLDKTTYH  252 (328)
Q Consensus       243 ~~plt~~t~~  252 (328)
                      ++|...++..
T Consensus        71 ~~~~~~~~~~   80 (134)
T d2hmva1          71 AIGANIQAST   80 (134)
T ss_dssp             CCCSCHHHHH
T ss_pred             EcCchHHhHH
Confidence            9996555433

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.74  E-value=9.6e-05  Score=63.69  Aligned_cols=108  Identities=16%  Similarity=0.200  Sum_probs=78.7

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-hcCCE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READV  239 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDi  239 (328)
                      .+|.|+|+.|-|+|++|+.+|+.| ...|++|++.|.+.... ....+.+       +.      ...+.++++ ..|||
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L-~~~Gakvv~~d~~~~~~-~~~~~~~-------g~------~~~~~~~~~~~~cDI   99 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKL-NTEGAKLVVTDVNKAAV-SAAVAEE-------GA------DAVAPNAIYGVTCDI   99 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHHH-------CC------EECCGGGTTTCCCSE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEeecccHHHH-HHHHHhc-------CC------cccCCcccccccccE
Confidence            469999999999999999999997 68999999999876432 2222221       11      123444444 46999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      ++-|.     ..+.||++...+++- .+++-.+-..+.+.++.....+.|
T Consensus       100 l~PcA-----~~~~I~~~~~~~l~a-k~Ive~ANn~~t~~ea~~~L~~rG  143 (230)
T d1leha1         100 FAPCA-----LGAVLNDFTIPQLKA-KVIAGSADNQLKDPRHGKYLHELG  143 (230)
T ss_dssp             EEECS-----CSCCBSTTHHHHCCC-SEECCSCSCCBSSHHHHHHHHHHT
T ss_pred             ecccc-----cccccChHHhhccCc-cEEEecccCCCCCchHHHHHHhhC
Confidence            99874     478899999999974 578888888888877754444444

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.72  E-value=0.00016  Score=60.21  Aligned_cols=141  Identities=13%  Similarity=0.221  Sum_probs=85.8

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh--------hhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA--------YGQFLKANGEQPVTWKRASSMDEVLREA  237 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (328)
                      .+|+|||+|.+|..+|..+  +.|.+|++||.++..- +..-..        ....... ..  .......+....+.++
T Consensus         1 MkI~ViGlG~vGl~~a~~~--a~g~~V~g~Din~~~v-~~l~~g~~p~~e~~l~~~~~~-~~--~~~~~~~~~~~~~~~~   74 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLL--SLQNEVTIVDILPSKV-DKINNGLSPIQDEYIEYYLKS-KQ--LSIKATLDSKAAYKEA   74 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHH--TTTSEEEEECSCHHHH-HHHHTTCCSSCCHHHHHHHHH-SC--CCEEEESCHHHHHHHC
T ss_pred             CEEEEECCChhHHHHHHHH--HCCCcEEEEECCHHHH-HHHhhcccccchhhHHHHhhh-hh--hhhhccchhhhhhhcc
Confidence            3699999999999999875  4699999999886531 110000        0000000 00  1112234566778899


Q ss_pred             CEEEEcCCCChhhh-cccc-------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCCCCCC-C-
Q 020301          238 DVISLHPVLDKTTY-HLIN-------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-P-  307 (328)
Q Consensus       238 DiV~l~~plt~~t~-~li~-------~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~-  307 (328)
                      |++++++|...... ...+       .+.+...+++.++|.-+.-.+=..+.+.+-+.+.++.      |.+|-... . 
T Consensus        75 ~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~G~a  148 (196)
T d1dlja2          75 ELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRESKA  148 (196)
T ss_dssp             SEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCTTST
T ss_pred             ccccccCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcchhhh
Confidence            99999999554322 2211       1223345678888888887776777788777765542      55676533 2 


Q ss_pred             --CcccCCCeEEc
Q 020301          308 --GLSEMKNAIVV  318 (328)
Q Consensus       308 --~L~~~~nvilT  318 (328)
                        .+...|++++-
T Consensus       149 i~d~~~p~riv~G  161 (196)
T d1dlja2         149 LYDNLYPSRIIVS  161 (196)
T ss_dssp             THHHHSCSCEEEE
T ss_pred             HhhccCCCEEEEe
Confidence              35566777654

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.70  E-value=9e-05  Score=67.55  Aligned_cols=98  Identities=20%  Similarity=0.302  Sum_probs=71.4

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      -++++|||.|..++.-++.+..-|+. +|.+|||++... +++.+.+    ..  ........+.+++++++.||+|+.|
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~-~~~~~~l----~~--~~g~~v~~~~s~~eav~~ADIi~t~  200 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLAT-AKLIANL----KE--YSGLTIRRASSVAEAVKGVDIITTV  200 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHHH----TT--CTTCEEEECSSHHHHHTTCSEEEEC
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHH-HHHHHhh----hh--ccCCCceecCCHHHHHhcCCceeec
Confidence            36899999999999988876666775 799999987542 2333322    11  1223344567999999999999998


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .+ ++.+.-+|+.+   .+|||+.+..++.
T Consensus       201 Ta-s~s~~Pv~~~~---~l~pG~hI~aiGs  226 (340)
T d1x7da_         201 TA-DKAYATIITPD---MLEPGMHLNAVGG  226 (340)
T ss_dssp             CC-CSSEEEEECGG---GCCTTCEEEECSC
T ss_pred             cc-cCCCCcccchh---hcCCCCEEeeccc
Confidence            86 45666788765   4689999888764

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=7.2e-05  Score=61.50  Aligned_cols=81  Identities=17%  Similarity=0.316  Sum_probs=65.5

Q ss_pred             ccccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      +.++.||++.|||-+. +|+.+|.+| ..-|++|..++.+.                            .++.+.+++||
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL-~~~gatVt~~~~~t----------------------------~~l~~~~~~aD   84 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLL-LWNNATVTTCHSKT----------------------------AHLDEEVNKGD   84 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHH-HHTTCEEEEECTTC----------------------------SSHHHHHTTCS
T ss_pred             CcccccceEEEEecCCccchHHHHHH-HhccCceEEEeccc----------------------------ccHHHHHhhcc
Confidence            4589999999999987 899999998 57799999987542                            36778899999


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~  276 (328)
                      +|+.+++.    .+++..+   ..|+|+++||++--.+
T Consensus        85 ivi~a~G~----~~~i~~~---~vk~g~iviDvgi~~~  115 (170)
T d1a4ia1          85 ILVVATGQ----PEMVKGE---WIKPGAIVIDCGINYV  115 (170)
T ss_dssp             EEEECCCC----TTCBCGG---GSCTTCEEEECCCBC-
T ss_pred             chhhcccc----ccccccc---cccCCCeEeccCcccc
Confidence            99999874    4567665   4689999999975433

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.59  E-value=0.00031  Score=60.86  Aligned_cols=119  Identities=17%  Similarity=0.259  Sum_probs=76.2

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch----------hHHHHHHhhhhh----hhhcCCCCCccccc
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA----------TRLEKFVTAYGQ----FLKANGEQPVTWKR  226 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~----------~~~~~~~~~~~~----~~~~~~~~~~~~~~  226 (328)
                      .+|.|+||.|=|+|++|+.+|+.| ...|++|++.+.+..          +.+.++.+..+.    ....  .  .+...
T Consensus        27 ~~l~g~~v~IqGfGnVG~~~a~~L-~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~--~--~~~~~  101 (242)
T d1v9la1          27 GGIEGKTVAIQGMGNVGRWTAYWL-EKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTT--K--DNAEF  101 (242)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHH--T--SCCCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhh--c--cCceE
Confidence            368999999999999999999997 689999997764310          111100000000    0000  0  00111


Q ss_pred             cCCHHHHhh-cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          227 ASSMDEVLR-EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       227 ~~~l~ell~-~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      ..+.+++++ .||+++-|.-     .+.|+++...+++ -.+++-.+-+++ ..++ .+.|.+..|.
T Consensus       102 ~~~~~~i~~~~~DIliPcA~-----~~~I~~~~a~~i~-ak~IvegAN~p~-t~~a-~~~L~~rgI~  160 (242)
T d1v9la1         102 VKNPDAIFKLDVDIFVPAAI-----ENVIRGDNAGLVK-ARLVVEGANGPT-TPEA-ERILYERGVV  160 (242)
T ss_dssp             CSSTTGGGGCCCSEEEECSC-----SSCBCTTTTTTCC-CSEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             eeCcchhccccccEEeecch-----hccccHHHHHhcc-cCEEEecCCCCC-ChhH-HHHHHhCCeE
Confidence            223455553 7999998854     7789999888887 458888899986 5565 3677776554

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00028  Score=57.28  Aligned_cols=96  Identities=21%  Similarity=0.182  Sum_probs=65.0

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-------
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-------  235 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-------  235 (328)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.|+++.+..  .       +++-|..........+..+..+       
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a-~~~G~~~Vi~~d~~~~rl~--~-------a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g   95 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVA-KAMGAAQVVVTDLSATRLS--K-------AKEIGADLVLQISKESPQEIARKVEGQLG   95 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHHHH--H-------HHHTTCSEEEECSSCCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCccHHHHHHHH-HHcCCceEEeccCCHHHHH--H-------HHHhCCcccccccccccccccccccccCC
Confidence            467899999999999999985 79999 8999999875431  1       1222332222222234444332       


Q ss_pred             -cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          236 -EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       236 -~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                       ..|+++-+++. +.+    -+..++.+++|..++.++-.
T Consensus        96 ~g~Dvvid~~G~-~~~----~~~a~~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2          96 CKPEVTIECTGA-EAS----IQAGIYATRSGGTLVLVGLG  130 (171)
T ss_dssp             SCCSEEEECSCC-HHH----HHHHHHHSCTTCEEEECSCC
T ss_pred             CCceEEEeccCC-chh----HHHHHHHhcCCCEEEEEecC
Confidence             58999998873 332    35677889999999888753

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=5.9e-05  Score=57.69  Aligned_cols=40  Identities=20%  Similarity=0.311  Sum_probs=34.8

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhH
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR  202 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~  202 (328)
                      ...+.||||+|.|..|+.+|.. ++.+|.+++++|+++...
T Consensus         8 ~~~~~kigIlGgGQL~rMla~a-A~~lG~~v~v~d~~~~~P   47 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIE-CQRLGVEVIAVDRYADAP   47 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHH-HHTTTCEEEEEESSTTCG
T ss_pred             CCCCCEEEEEeCCHHHHHHHHH-HHHCCCEEEEEcCCCCCc
Confidence            3456789999999999999998 589999999999987653

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.46  E-value=0.00044  Score=59.55  Aligned_cols=118  Identities=18%  Similarity=0.199  Sum_probs=78.7

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch----------hHHHHHHhhhhhhhhcCCCCCccccccCCH
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA----------TRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (328)
                      .++.|+|+.|=|+|++|+.+|+.|.+.+|++|++.+.+..          ..+..+.+.++      ...........+.
T Consensus        27 ~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~------~~~~~~~~~~~~~  100 (234)
T d1b26a1          27 IDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHG------TVVTYPKGERITN  100 (234)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSS------CSTTCSSCEEECH
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhc------ceeccccceeecc
Confidence            4789999999999999999999875568999997653210          11111111111      1111111122356


Q ss_pred             HHHhh-cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          231 DEVLR-EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       231 ~ell~-~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      ++++. .||+++-|.     ..+.|+++...+++- .+++-.+-+++- .++ .+.|.+..|.
T Consensus       101 ~~~~~~~~DI~~PcA-----~~~~I~~~~a~~l~~-~~I~e~AN~p~t-~~a-~~~L~~rgI~  155 (234)
T d1b26a1         101 EELLELDVDILVPAA-----LEGAIHAGNAERIKA-KAVVEGANGPTT-PEA-DEILSRRGIL  155 (234)
T ss_dssp             HHHHTSCCSEEEECS-----CTTCBCHHHHTTCCC-SEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             ccccccccceeecch-----hcccccHHHHHHhhh-ceEeecCCCCCC-HHH-HHHHHHCCeE
Confidence            77777 899998773     478899999999985 478888888874 444 4667766554

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.45  E-value=0.00019  Score=58.89  Aligned_cols=109  Identities=16%  Similarity=0.155  Sum_probs=67.9

Q ss_pred             cccccCCCEEEEEecCHH-HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301          159 VGNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (328)
Q Consensus       159 ~~~~l~g~tvgIiG~G~I-G~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (328)
                      .|.++.||++.|||-+.| |+.+|.+| ..-|+.|..++..........   ........+...........+++...+|
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL-~~~gaTVt~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~lk~~~~~a   98 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALL-ANDGATVYSVDVNNIQKFTRG---ESLKLNKHHVEDLGEYSEDLLKKCSLDS   98 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHH-HTTSCEEEEECSSEEEEEESC---CCSSCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHH-HHCCCEEEEeccccccccccc---cceeeeeeccccccccchhHHhhccccC
Confidence            467899999999998875 99999998 578999998876532210000   0000000000000000112377888899


Q ss_pred             CEEEEcCCCChhhhcc-ccHHHHhcCCCCcEEEEcCCCcccC
Q 020301          238 DVISLHPVLDKTTYHL-INKERLATMKKEAILVNCSRGPVID  278 (328)
Q Consensus       238 DiV~l~~plt~~t~~l-i~~~~~~~mk~ga~lIN~aRG~~vd  278 (328)
                      |+|+..+|-.    ++ +..+   ..|+|+++||++-...++
T Consensus        99 DIvIsavG~p----~~~i~~d---~ik~GavvIDvGi~~~~~  133 (171)
T d1edza1          99 DVVITGVPSE----NYKFPTE---YIKEGAVCINFACTKNFS  133 (171)
T ss_dssp             SEEEECCCCT----TCCBCTT---TSCTTEEEEECSSSCCBC
T ss_pred             CEEEEccCCC----ccccChh---hcccCceEeecccccccc
Confidence            9999999832    22 4443   358999999998765444

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.36  E-value=0.00049  Score=57.03  Aligned_cols=99  Identities=13%  Similarity=0.177  Sum_probs=60.4

Q ss_pred             ccccCCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          160 GNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       160 ~~~l~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      +.+|.||++-|.| -|-||+++|+.| ...|++|+..+|+.++. ++..+.+..... ............++++++.+.|
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~l-a~~G~~V~~~~r~~~~~-~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~iD   94 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALL-AGEGAEVVLCGRKLDKA-QAAADSVNKRFK-VNVTAAETADDASRAEAVKGAH   94 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HHHHHHHHHHHT-CCCEEEECCSHHHHHHHTTTCS
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHH-HhhccchhhcccchHHH-HHHHHHHHhccc-hhhhhhhcccHHHHHHHhcCcC
Confidence            5689999999999 699999999998 57899999999987542 222221111000 0011111112235667788899


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCC
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKK  264 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~  264 (328)
                      +|+.+.+..   ...++.+.++.+..
T Consensus        95 ilin~Ag~g---~~~~~~e~~~~~~~  117 (191)
T d1luaa1          95 FVFTAGAIG---LELLPQAAWQNESS  117 (191)
T ss_dssp             EEEECCCTT---CCCBCHHHHHTCTT
T ss_pred             eeeecCccc---cccCCHHHHHhhhc
Confidence            888775521   12344555544443

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=0.00013  Score=59.42  Aligned_cols=96  Identities=17%  Similarity=0.145  Sum_probs=61.9

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccc-cccCC-HHHHhhcCCEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASS-MDEVLREADVIS  241 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-l~ell~~aDiV~  241 (328)
                      .|.+|.|+|.|.+|...++.+ +.+|++|++.|+++.+.  ++..++       |....-. ....+ .++.....|+++
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~a-k~~G~~vi~~~~~~~k~--~~a~~l-------Ga~~~i~~~~~~~~~~~~~~~~d~vi   96 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLIS-KAMGAETYVISRSSRKR--EDAMKM-------GADHYIATLEEGDWGEKYFDTFDLIV   96 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEESSSTTH--HHHHHH-------TCSEEEEGGGTSCHHHHSCSCEEEEE
T ss_pred             CCCEEEEECCCCcchhHHHHh-hhccccccccccchhHH--HHhhcc-------CCcEEeeccchHHHHHhhhcccceEE
Confidence            588999999999999999984 79999999999987542  112222       3221111 11112 334556679988


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .++....+   ..-...++.++++..+++++
T Consensus        97 ~~~~~~~~---~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          97 VCASSLTD---IDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             ECCSCSTT---CCTTTGGGGEEEEEEEEECC
T ss_pred             EEecCCcc---chHHHHHHHhhccceEEEec
Confidence            88663221   11234677788888888875

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.33  E-value=0.00047  Score=55.01  Aligned_cols=104  Identities=14%  Similarity=0.249  Sum_probs=59.8

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      ..++|+|||.|.+|..+|..|+. ++.-+|..||+..........+ ........+  . ......+.++ ++.||+|++
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~D-l~~a~~~~~--~-~~~~~~d~~~-~~~adivvi   78 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALD-LEDAQAFTA--P-KKIYSGEYSD-CKDADLVVI   78 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH-HHGGGGGSC--C-CEEEECCGGG-GTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHH-HhccccccC--C-ceEeeccHHH-hccccEEEE
Confidence            45699999999999999988652 4446899999886432211111 110011111  1 1112345555 689999999


Q ss_pred             cCCCChhhhc------------ccc--HHHHhcCCCCcEEEEcCC
Q 020301          243 HPVLDKTTYH------------LIN--KERLATMKKEAILVNCSR  273 (328)
Q Consensus       243 ~~plt~~t~~------------li~--~~~~~~mk~ga~lIN~aR  273 (328)
                      +... +...+            ++.  .+.+..-.|.+++|+++-
T Consensus        79 tag~-~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN  122 (146)
T d1ez4a1          79 TAGA-PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (146)
T ss_dssp             CCCC-----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             eccc-ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence            8642 22211            111  123445668999999974

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.32  E-value=0.00045  Score=53.67  Aligned_cols=92  Identities=12%  Similarity=0.173  Sum_probs=58.0

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC---HHHH-hhcCCEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDiV~  241 (328)
                      .+|.|+|+|++|+.+|+.| ...|.+|++.|.+++.. ++..+.+       +.. .-.....+   |+++ ++++|.++
T Consensus         1 M~IvI~G~G~~G~~la~~L-~~~g~~v~vid~d~~~~-~~~~~~~-------~~~-vi~Gd~~~~~~l~~~~i~~a~~vv   70 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSL-SEKGHDIVLIDIDKDIC-KKASAEI-------DAL-VINGDCTKIKTLEDAGIEDADMYI   70 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHC-------SSE-EEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-HHCCCCcceecCChhhh-hhhhhhh-------hhh-hccCcccchhhhhhcChhhhhhhc
Confidence            3689999999999999997 68899999999987532 2211111       111 11111223   3333 78899998


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEE
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILV  269 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lI  269 (328)
                      ...+.  +..+++-....+.+.+..+++
T Consensus        71 ~~t~~--d~~N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          71 AVTGK--EEVNLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             ECCSC--HHHHHHHHHHHHHTTCCCEEE
T ss_pred             ccCCc--HHHHHHHHHHHHHcCCceEEE
Confidence            88774  334445455666676665554

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.32  E-value=0.00054  Score=54.74  Aligned_cols=107  Identities=20%  Similarity=0.331  Sum_probs=60.7

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      -.+++|+|||.|.+|+.+|..++ +++.-++..||+.+........+ ..+ ...-....... ...+ .+.++.||+|+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~D-l~~-~~~~~~~~~~~-~~~d-~~~l~daDvvv   79 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMD-FNH-GKVFAPKPVDI-WHGD-YDDCRDADLVV   79 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH-HHH-HTTSSSSCCEE-EECC-GGGTTTCSEEE
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhcc-Hhh-CccccCCCeEE-EECC-HHHhccceeEE
Confidence            35789999999999999998764 24555899999876532111111 110 00000011111 1223 46689999999


Q ss_pred             EcCCCChh---hh-ccc--c-------HHHHhcCCCCcEEEEcCC
Q 020301          242 LHPVLDKT---TY-HLI--N-------KERLATMKKEAILVNCSR  273 (328)
Q Consensus       242 l~~plt~~---t~-~li--~-------~~~~~~mk~ga~lIN~aR  273 (328)
                      ++......   ++ .++  |       .+.+.+..|++++|+++-
T Consensus        80 itag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtN  124 (148)
T d1ldna1          80 ICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (148)
T ss_dssp             ECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             EecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence            87553221   11 111  1       123344558899999854

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.30  E-value=0.00023  Score=56.61  Aligned_cols=103  Identities=17%  Similarity=0.223  Sum_probs=55.5

Q ss_pred             CEEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      ++|+|||.|.+|..+|-.++ +++.-++..||........+..| +    .+.............-.+.++.||+|+++.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~D-l----~~~~~~~~~~~~~~~~~~~~~~adivvita   76 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMD-I----NHGLPFMGQMSLYAGDYSDVKDCDVIVVTA   76 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHH-H----TTSCCCTTCEEEC--CGGGGTTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeee-e----ccCcccCCCeeEeeCcHHHhCCCceEEEec
Confidence            47999999999999997764 34455899999876532111111 1    111110001111122345679999999984


Q ss_pred             CCCh---hhh-ccc--c-------HHHHhcCCCCcEEEEcCC
Q 020301          245 VLDK---TTY-HLI--N-------KERLATMKKEAILVNCSR  273 (328)
Q Consensus       245 plt~---~t~-~li--~-------~~~~~~mk~ga~lIN~aR  273 (328)
                      -...   +++ .++  |       .+.+....|++++|+++.
T Consensus        77 g~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  118 (142)
T d1y6ja1          77 GANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN  118 (142)
T ss_dssp             CC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred             ccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC
Confidence            4222   122 111  1       123444568999999966

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.30  E-value=0.00052  Score=54.75  Aligned_cols=104  Identities=18%  Similarity=0.200  Sum_probs=59.4

Q ss_pred             CEEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      |+|+|||.|.+|..+|-.++ +++.-++..||........+..+-. +...... .... ....+. +.++.||+|+++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~-~a~~~~~-~~~~-~~~~d~-~~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQ-DAMANLE-AHGN-IVINDW-AALADADVVISTL   77 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHH-HHGGGSS-SCCE-EEESCG-GGGTTCSEEEECC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhh-ccccccC-Cccc-eeccCH-HHhccccEEEEec
Confidence            78999999999999998754 3445589999987653222212211 1000001 0111 112343 4579999999987


Q ss_pred             CCCh-------hhhc-cc--c-------HHHHhcCCCCcEEEEcCC
Q 020301          245 VLDK-------TTYH-LI--N-------KERLATMKKEAILVNCSR  273 (328)
Q Consensus       245 plt~-------~t~~-li--~-------~~~~~~mk~ga~lIN~aR  273 (328)
                      ....       +++. ++  |       .+.+....|++++|+++-
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  123 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISN  123 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecC
Confidence            6422       1221 11  1       123445578999999965

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.30  E-value=0.00062  Score=60.40  Aligned_cols=116  Identities=16%  Similarity=0.208  Sum_probs=75.5

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc----------hhHHHHHHhhhhhhhhcCCCCCccccccCCH
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ----------ATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (328)
                      .+|.|+|+.|=|+|++|+.+|+.| ...|++|++++.+.          .+.+.++....+      ........ ..+.
T Consensus        32 ~~L~gktvaIqGfGnVG~~~A~~L-~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~------~~~~~~~~-~~~~  103 (293)
T d1hwxa1          32 PGFGDKTFAVQGFGNVGLHSMRYL-HRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHG------TILGFPKA-KIYE  103 (293)
T ss_dssp             SSSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTS------SSTTCTTS-CBCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEccchhhccccccchHHHHHHHHHcC------Ceeccccc-ccCC
Confidence            479999999999999999999997 68999998875321          112222221111      11111011 1122


Q ss_pred             HHHhh-cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          231 DEVLR-EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       231 ~ell~-~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      ++++. .||+++-|     .+.+.|+.+...+++- .+++-.|-|++ ..+|. +.|.+..|.
T Consensus       104 ~~~~~~~~DIliPa-----A~~~~I~~~~a~~l~a-k~I~EgAN~P~-t~eA~-~~L~~~gI~  158 (293)
T d1hwxa1         104 GSILEVDCDILIPA-----ASEKQLTKSNAPRVKA-KIIAEGANGPT-TPQAD-KIFLERNIM  158 (293)
T ss_dssp             SCGGGCCCSEEEEC-----SSSSCBCTTTGGGCCC-SEEECCSSSCB-CHHHH-HHHHHTTCE
T ss_pred             cccccCCccEEeec-----cccccccHHHHHHHhh-CEEeccCCCCC-CcchH-HHHHHCCCE
Confidence            34444 89999877     4578899998888874 48889999996 44553 566665554

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.29  E-value=0.0012  Score=52.95  Aligned_cols=108  Identities=15%  Similarity=0.233  Sum_probs=62.1

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      +-++|+|||.|.+|+.+|..++ ..+ .+++.+|...........+ ........+. ........+.++.++.||+|++
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~-~~~~~el~L~D~~~~~~~g~a~D-l~~~~~~~~~-~~~~~~~~~~~~~~~~adiVvi   82 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCA-LRELADVVLYDVVKGMPEGKALD-LSHVTSVVDT-NVSVRAEYSYEAALTGADCVIV   82 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSSSHHHHHHHH-HHHHHHHTTC-CCCEEEECSHHHHHTTCSEEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHH-hCCCceEEEEEeccccchhHHHH-HhhhccccCC-eeEEeccCchhhhhcCCCeEEE
Confidence            3578999999999999998753 333 3899999876432111111 1000000011 1111122456788999999999


Q ss_pred             cCCCC--h------hhhcc-c--c-------HHHHhcCCCCcEEEEcCCC
Q 020301          243 HPVLD--K------TTYHL-I--N-------KERLATMKKEAILVNCSRG  274 (328)
Q Consensus       243 ~~plt--~------~t~~l-i--~-------~~~~~~mk~ga~lIN~aRG  274 (328)
                      +....  +      .|+.- +  |       .+.+.+..|.+++++++--
T Consensus        83 tag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNP  132 (154)
T d1pzga1          83 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP  132 (154)
T ss_dssp             CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             ecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            87421  1      13321 1  1       1234445689999998653

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.29  E-value=0.00042  Score=62.43  Aligned_cols=93  Identities=16%  Similarity=0.227  Sum_probs=67.1

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      -+++||||.|..++.-++.++..|.. +|.+|+|+.+.. +.+.+.    ....+.     ....+.++.+..||+|+.+
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~-~~~~~~----~~~~~~-----~~~~~~~~a~~~aDiV~ta  194 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAA-KKFVSY----CEDRGI-----SASVQPAEEASRCDVLVTT  194 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHH----HHHTTC-----CEEECCHHHHTSSSEEEEC
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHH-HHHHHH----HHhcCC-----ccccchhhhhccccEEEEe
Confidence            35899999999999999987666775 799999987542 333322    222221     1224567788999999988


Q ss_pred             CCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .|   .+.-+|..+   .+|||+.++.++.
T Consensus       195 T~---s~~P~~~~~---~l~~G~hv~~iGs  218 (320)
T d1omoa_         195 TP---SRKPVVKAE---WVEEGTHINAIGA  218 (320)
T ss_dssp             CC---CSSCCBCGG---GCCTTCEEEECSC
T ss_pred             cc---Ccccccchh---hcCCCCeEeecCC
Confidence            65   567778765   4789999999874

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.28  E-value=0.00011  Score=59.35  Aligned_cols=77  Identities=8%  Similarity=0.073  Sum_probs=50.8

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      .+|+|.|||.|.||+.+|+.|+ .-|.+|+++||+.... ++..+.+...    ............+++.+...|+++.+
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~-~~g~~V~v~dr~~~~a-~~l~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~i~~   74 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLT-DSGIKVTVACRTLESA-KKLSAGVQHS----TPISLDVNDDAALDAEVAKHDLVISL   74 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHH-TTTCEEEEEESCHHHH-HHHHTTCTTE----EEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCEEEEEECChHHH-HHHHhccccc----ccccccccchhhhHhhhhccceeEee
Confidence            3789999999999999999985 6689999999997642 2222211100    00000011112456778899999988


Q ss_pred             CCC
Q 020301          244 PVL  246 (328)
Q Consensus       244 ~pl  246 (328)
                      +|.
T Consensus        75 ~~~   77 (182)
T d1e5qa1          75 IPY   77 (182)
T ss_dssp             SCG
T ss_pred             ccc
Confidence            884

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.26  E-value=0.00038  Score=57.06  Aligned_cols=94  Identities=19%  Similarity=0.163  Sum_probs=57.0

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-------
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-------  235 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-------  235 (328)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.|+++...  +...       +-|....-.....++.+..+       
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~a-k~~Ga~~Vi~~~~~~~~~--~~a~-------~lGa~~vi~~~~~~~~~~~~~i~~~~~   97 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIA-RSLGAENVIVIAGSPNRL--KLAE-------EIGADLTLNRRETSVEERRKAIMDITH   97 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHH-HHTTBSEEEEEESCHHHH--HHHH-------HTTCSEEEETTTSCHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCccchhheecc-cccccccccccccccccc--cccc-------cccceEEEeccccchHHHHHHHHHhhC
Confidence            589999999999999999985 89998 899999976542  1112       22221111111223332211       


Q ss_pred             --cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          236 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       236 --~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                        ..|+|+-++.. +.+    -+..++.+++|..++-++
T Consensus        98 ~~g~Dvvid~vG~-~~~----~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2          98 GRGADFILEATGD-SRA----LLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             TSCEEEEEECSSC-TTH----HHHHHHHEEEEEEEEECC
T ss_pred             CCCceEEeecCCc-hhH----HHHHHHHhcCCCEEEEEe
Confidence              26787777653 221    144566677777666654

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.00052  Score=55.85  Aligned_cols=116  Identities=15%  Similarity=0.058  Sum_probs=75.2

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHH-HhhcCCE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADV  239 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDi  239 (328)
                      ..+.||++.|+|.|-.+++++..| ...|++|..++|+.+.. ++..+.+..    .+  .   ....++++ ....+|+
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~al-~~~g~~i~I~nRt~~ka-~~l~~~~~~----~~--~---~~~~~~~~~~~~~~dl   82 (170)
T d1nyta1          14 FIRPGLRILLIGAGGASRGVLLPL-LSLDCAVTITNRTVSRA-EELAKLFAH----TG--S---IQALSMDELEGHEFDL   82 (170)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHHH-HHHHHHTGG----GS--S---EEECCSGGGTTCCCSE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHh-cccceEEEeccchHHHH-HHHHHHHhh----cc--c---ccccccccccccccce
Confidence            468899999999999999999987 57899999999987542 222222211    11  1   11123333 2467999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~  290 (328)
                      |+.|.|..-...  .....++.++++++++++-=.+ ..+.-|..|-+.|.
T Consensus        83 iIN~Tp~G~~~~--~~~~~~~~~~~~~~v~D~vY~P-~~T~ll~~A~~~G~  130 (170)
T d1nyta1          83 IINATSSGISGD--IPAIPSSLIHPGIYCYDMFYQK-GKTPFLAWCEQRGS  130 (170)
T ss_dssp             EEECCSCGGGTC--CCCCCGGGCCTTCEEEESCCCS-SCCHHHHHHHHTTC
T ss_pred             eecccccCcccC--CCCCcHHHhccCcEEEEeecCC-CCCHHHHHHHHcCC
Confidence            999999764322  1222345678899999986444 34555555555553

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.25  E-value=0.00046  Score=56.17  Aligned_cols=66  Identities=15%  Similarity=0.261  Sum_probs=45.8

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      -++||||+|.||+..++.+.+.=++++. ++|++....                 .........++++++.+.|+|++|.
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~D~Vvi~t   66 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD-----------------TKTPVFDVADVDKHADDVDVLFLCM   66 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS-----------------SSSCEEEGGGGGGTTTTCSEEEECS
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccc-----------------cccccccchhhhhhccccceEEEeC
Confidence            4699999999999999997432378766 456554220                 1112233457788889999999999


Q ss_pred             CCCh
Q 020301          245 VLDK  248 (328)
Q Consensus       245 plt~  248 (328)
                      |...
T Consensus        67 p~~~   70 (170)
T d1f06a1          67 GSAT   70 (170)
T ss_dssp             CTTT
T ss_pred             CCcc
Confidence            9543

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.00057  Score=55.05  Aligned_cols=107  Identities=16%  Similarity=0.191  Sum_probs=61.3

Q ss_pred             EEEEEecCHHHHH-HHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          167 TVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       167 tvgIiG~G~IG~~-vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      ++||||+|.+|+. ....+.+.-++++. ++|++.... .++.+.|       +     ...+.++++++++.|+|+++.
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~-~~~~~~~-------~-----~~~~~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKA-LPICESW-------R-----IPYADSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTH-HHHHHHH-------T-----CCBCSSHHHHHTTCSEEEECS
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhh-hhhhhcc-------c-----ccccccchhhhhhcccccccc
Confidence            6999999999987 45555333378865 678876532 2222232       1     123568999999999999999


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEc-CCCcccCHHHHHHHHHcCC
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNC-SRGPVIDEVALVEHLKQNP  290 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~-aRG~~vde~aL~~aL~~g~  290 (328)
                      |.  .++.-+-...+++=|  .+++.- ---.+-+.+.|.++.++..
T Consensus        70 p~--~~h~~~~~~al~~gk--~V~~EKPla~~~~e~~~l~~~a~~~~  112 (164)
T d1tlta1          70 ST--ASHFDVVSTLLNAGV--HVCVDKPLAENLRDAERLVELAARKK  112 (164)
T ss_dssp             CT--THHHHHHHHHHHTTC--EEEEESSSCSSHHHHHHHHHHHHHTT
T ss_pred             cc--hhccccccccccccc--eeeccccccCCHHHHHHHHHHHHHcC
Confidence            93  333323333333222  234332 1111234455555555544

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.00061  Score=56.07  Aligned_cols=122  Identities=16%  Similarity=0.207  Sum_probs=73.1

Q ss_pred             ccccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HHHHHhhhhhhhhcCCCCCcc---ccccCCHHHH
Q 020301          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEKFVTAYGQFLKANGEQPVT---WKRASSMDEV  233 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~el  233 (328)
                      +.++.||++.|+|.|-.|++++..|+ ..|+ +++.++|+.+..  .....+.+...    ......   +....++.+.
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~-~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~   87 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGA-IEGLKEIKLFNRRDEFFDKALAFAQRVNEN----TDCVVTVTDLADQQAFAEA   87 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEECSSTTHHHHHHHHHHHHHH----SSCEEEEEETTCHHHHHHH
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHh-hcCCceEeeeccchHHHHHHHHHHHHHHhh----cCcceEeeecccccchhhh
Confidence            35789999999999999999999874 5677 788999986532  12222221110    101111   1111245667


Q ss_pred             hhcCCEEEEcCCCChhh---hccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          234 LREADVISLHPVLDKTT---YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       234 l~~aDiV~l~~plt~~t---~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      +..+|+|+.+.|.....   ..++.  .+..++++.+++++.=.+ ..+.=+..|-+.|
T Consensus        88 ~~~~diiIN~Tp~G~~~~~~~~~~~--~~~~~~~~~~v~Di~Y~p-~~T~ll~~a~~~g  143 (182)
T d1vi2a1          88 LASADILTNGTKVGMKPLENESLVN--DISLLHPGLLVTECVYNP-HMTKLLQQAQQAG  143 (182)
T ss_dssp             HHTCSEEEECSSTTSTTSCSCCSCC--CGGGSCTTCEEEECCCSS-SSCHHHHHHHTTT
T ss_pred             hcccceeccccCCccccccchhhhh--HHHhhhcchhhHHhhcCc-cccHHHHHHHHCc
Confidence            89999999999965432   11111  245678899999985332 3333344443333

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.16  E-value=0.001  Score=52.47  Aligned_cols=103  Identities=17%  Similarity=0.196  Sum_probs=58.9

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      +|+|||.|.+|+.+|..++ ..|  -++..||...........+.... ...... ..... .++..+.++.||+|+++.
T Consensus         2 KI~IIGaG~VG~~la~~l~-~~~l~~el~L~Di~~~~~~~~~~d~~~~-~~~~~~-~~~i~-~~~~~~~~~dadvvvita   77 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLA-EKQLARELVLLDVVEGIPQGKALDMYES-GPVGLF-DTKVT-GSNDYADTANSDIVIITA   77 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HTTCCSEEEEECSSSSHHHHHHHHHHTT-HHHHTC-CCEEE-EESCGGGGTTCSEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHH-hCCCCceEEEeccccccchhhhhhhhcc-cchhcc-cceEE-ecCCHHHhcCCeEEEEEE
Confidence            7999999999999998864 444  58999998865322111111000 000011 11111 123456689999999985


Q ss_pred             --CCChh-hhcc-c--c-------HHHHhcCCCCcEEEEcCC
Q 020301          245 --VLDKT-TYHL-I--N-------KERLATMKKEAILVNCSR  273 (328)
Q Consensus       245 --plt~~-t~~l-i--~-------~~~~~~mk~ga~lIN~aR  273 (328)
                        |..+. ++.- +  |       .+.+....|+++++|++-
T Consensus        78 g~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1guza1          78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN  119 (142)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred             ecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence              43332 2211 1  1       123344558999999965

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.16  E-value=0.00057  Score=54.05  Aligned_cols=102  Identities=18%  Similarity=0.285  Sum_probs=59.3

Q ss_pred             EEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          167 TVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      +|+|||.|.+|..+|..++ +++.-++..+|........+..+.... ..   ..........+ .+.++.||+|+++.-
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~-~~---~~~~~~~~~~~-~~~~~~adivvitag   76 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHG-TP---FTRRANIYAGD-YADLKGSDVVIVAAG   76 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH-GG---GSCCCEEEECC-GGGGTTCSEEEECCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccc-cc---ccccccccCCc-HHHhcCCCEEEEecc
Confidence            7999999999999998654 466679999998865322222221100 00   00111112223 455899999999863


Q ss_pred             C--Ch-hhh-ccc--c-------HHHHhcCCCCcEEEEcCC
Q 020301          246 L--DK-TTY-HLI--N-------KERLATMKKEAILVNCSR  273 (328)
Q Consensus       246 l--t~-~t~-~li--~-------~~~~~~mk~ga~lIN~aR  273 (328)
                      .  .+ +++ .++  |       .+.+.+..|++++++++-
T Consensus        77 ~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtN  117 (140)
T d1a5za1          77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN  117 (140)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             cccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCC
Confidence            2  22 111 111  1       134455668999999864

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.15  E-value=0.0024  Score=54.89  Aligned_cols=117  Identities=24%  Similarity=0.352  Sum_probs=75.7

Q ss_pred             ccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch----------hHHHHHHhhhhhhhhcCCCCCccccccCCHH
Q 020301          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA----------TRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (328)
Q Consensus       162 ~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (328)
                      .|.|+|+.|-|+|++|+.+|+.|.+.+|++|++..-+..          ..+.++...      .............+.+
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~------~~~~~~~~~~~~~~~~  102 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNE------HGSVKDFPGATNITNE  102 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHH------HSSSTTCTTSEEECHH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHh------ccccccCCCCeeeccc
Confidence            599999999999999999999875578999987643210          111111111      1111111111123455


Q ss_pred             HHh-hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          232 EVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       232 ell-~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      +++ ..||+++-|.-     .+.|+++..++++- .+++-.+-+++- .++ .+.|.+..|.
T Consensus       103 ~i~~~~~DIl~PcA~-----~~~I~~~~a~~i~a-k~I~e~AN~p~t-~ea-~~~L~~rgI~  156 (239)
T d1gtma1         103 ELLELEVDVLAPAAI-----EEVITKKNADNIKA-KIVAEVANGPVT-PEA-DEILFEKGIL  156 (239)
T ss_dssp             HHHHSCCSEEEECSC-----SCCBCTTGGGGCCC-SEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             ccccccccEEeeccc-----cccccHHHHHhccc-cEEEecCCCCCC-HHH-HHHHHHCCCE
Confidence            554 47999988854     68899999998864 578888999975 445 4667665554

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.14  E-value=0.0012  Score=53.08  Aligned_cols=96  Identities=16%  Similarity=0.122  Sum_probs=62.3

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccc--cccCCHHHH---h----
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW--KRASSMDEV---L----  234 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~el---l----  234 (328)
                      .|.++.|+|.|.||...++.+ +.+|++|+++|+++.+.  +.       +++-+......  ....+.++.   +    
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~a-k~~Ga~vi~v~~~~~r~--~~-------a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~   95 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAA-KAYGAFVVCTARSPRRL--EV-------AKNCGADVTLVVDPAKEEESSIIERIRSAI   95 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH--HH-------HHHTTCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCEEEEEcccccchhhHhhH-hhhcccccccchHHHHH--HH-------HHHcCCcEEEeccccccccchhhhhhhccc
Confidence            467999999999999999985 89999999999987542  11       11222211110  011222222   2    


Q ss_pred             -hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          235 -READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       235 -~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                       ...|+|+-+.. .+.+    -...++.++++..++.++-.
T Consensus        96 g~g~D~vid~~g-~~~~----~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2          96 GDLPNVTIDCSG-NEKC----ITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             SSCCSEEEECSC-CHHH----HHHHHHHSCTTCEEEECSCC
T ss_pred             ccCCceeeecCC-ChHH----HHHHHHHHhcCCceEEEecC
Confidence             23799988876 3332    24557888999999998754

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.05  E-value=0.001  Score=53.68  Aligned_cols=93  Identities=13%  Similarity=0.176  Sum_probs=57.1

Q ss_pred             CEEEEEecCHHHHH-HHHHHHhcC-CcEEEE-EcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-----hcC
Q 020301          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA  237 (328)
Q Consensus       166 ~tvgIiG~G~IG~~-vA~~l~~~f-g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~~a  237 (328)
                      -++||||.|.||+. +.+.+ +.+ ..++.+ .+++.......+.+.+       +. +.   .+.++++++     .+.
T Consensus         5 irvaIIGaG~ig~~~~~~~l-~~~~~~el~avas~~~~~~~~~~a~~~-------~i-~~---~~~~~d~l~~~~~~~~i   72 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVL-RNAKYLEMGAMVGIDAASDGLARAQRM-------GV-TT---TYAGVEGLIKLPEFADI   72 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHH-HHCSSEEEEEEECSCTTCHHHHHHHHT-------TC-CE---ESSHHHHHHHSGGGGGE
T ss_pred             cEEEEEcCcHHHHHHHHHHH-hhCCcceEEEEEecchhccchhhhhhc-------CC-cc---cccceeeeeeccccccc
Confidence            37999999999986 56765 444 456554 5776543222222222       21 11   223455553     467


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      |+|+.++|...+..+   +..++..+.|.++|+-+.
T Consensus        73 DiVf~ATpag~h~~~---~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          73 DFVFDATSASAHVQN---EALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             EEEEECSCHHHHHHH---HHHHHHHCTTCEEEECST
T ss_pred             CEEEEcCCchhHHHh---HHHHHHHHcCCEEEEccc
Confidence            999999884333333   556777899999999875

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.04  E-value=0.0011  Score=54.23  Aligned_cols=112  Identities=17%  Similarity=0.134  Sum_probs=65.1

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCEEEEc
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH  243 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~  243 (328)
                      ++||||+|.+|+..++.+...-+++|. ++|++.+. .....+.|       +. +.....+.+++++++  ..|+|+++
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~-~~~~~~~~-------~~-~~~~~~~~~~~~ll~~~~iD~v~I~   73 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEK-AKAFATAN-------NY-PESTKIHGSYESLLEDPEIDALYVP   73 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHH-HHHHHHHT-------TC-CTTCEEESSHHHHHHCTTCCEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccc-cccchhcc-------cc-ccceeecCcHHHhhhccccceeeec
Confidence            699999999999999987433378877 46887643 22222222       21 111223578999985  47899999


Q ss_pred             CCCChhhhccccHHHHhcCCCCcE-EEEc-CCCcccCHHHHHHHHHcCCcc
Q 020301          244 PVLDKTTYHLINKERLATMKKEAI-LVNC-SRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk~ga~-lIN~-aRG~~vde~aL~~aL~~g~i~  292 (328)
                      .|.  .++--+   ....++.|.- ++.- .--.+-+.+.|.+..++..+.
T Consensus        74 tp~--~~h~~~---~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~  119 (184)
T d1ydwa1          74 LPT--SLHVEW---AIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  119 (184)
T ss_dssp             CCG--GGHHHH---HHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             ccc--hhhcch---hhhhhhccceeecccccccCHHHHHHHHHHHHhhCCE
Confidence            883  333222   2233444433 3321 111223445677777776554

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.0003  Score=50.10  Aligned_cols=35  Identities=20%  Similarity=0.297  Sum_probs=31.8

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      |||||+|-|..|+.++.. ++.+|.+++++|++.+.
T Consensus         2 k~vgIlG~GQLgrMl~~A-a~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQA-GEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHH-HGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHH-HHHcCCEEEEEcCCCCC
Confidence            689999999999999998 58999999999997653

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.99  E-value=0.0013  Score=53.04  Aligned_cols=110  Identities=15%  Similarity=0.202  Sum_probs=65.3

Q ss_pred             EEEEEecCHHHHH-HHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-cCCEEEEcC
Q 020301          167 TVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISLHP  244 (328)
Q Consensus       167 tvgIiG~G~IG~~-vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV~l~~  244 (328)
                      ++||||+|.+|+. ....+.+.-+.++.++|+++.. .+.+.+.|       +..    ..+.+.++++. +.|+|+++.
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~-~~~~~~~~-------~~~----~~~~~~~~ll~~~iD~V~I~t   70 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKV-LGTLATRY-------RVS----ATCTDYRDVLQYGVDAVMIHA   70 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHH-HHHHHHHT-------TCC----CCCSSTTGGGGGCCSEEEECS
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHH-HHHHHHhc-------ccc----cccccHHHhcccccceecccc
Confidence            7999999999976 4566533347888899987643 22332322       111    12457778775 569999999


Q ss_pred             CCChhhhccccHHHHhcCCCCcEEEEcC-CCcccCHHHHHHHHHcCCcc
Q 020301          245 VLDKTTYHLINKERLATMKKEAILVNCS-RGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk~ga~lIN~a-RG~~vde~aL~~aL~~g~i~  292 (328)
                      |  +.++.-+-...++.=|  .+++.-= --.+-+.+.|.++.++..+.
T Consensus        71 p--~~~H~~~~~~al~~gk--~V~~EKP~~~~~~e~~~l~~~a~~~~~~  115 (167)
T d1xeaa1          71 A--TDVHSTLAAFFLHLGI--PTFVDKPLAASAQECENLYELAEKHHQP  115 (167)
T ss_dssp             C--GGGHHHHHHHHHHTTC--CEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             c--cccccccccccccccc--ccccCCCCcCCHHHHHHHHHHHHHcCCE
Confidence            8  4444433344444322  2555431 12234556777777765543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.99  E-value=0.00049  Score=56.37  Aligned_cols=120  Identities=15%  Similarity=0.162  Sum_probs=72.1

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .++.||++.|+|.|-.+++++..| ...| +|++++|+.++. ++..+.+....   ...........+++..+..+|++
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL-~~~~-~i~I~nR~~~ka-~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~dli   87 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFEL-AKDN-NIIIANRTVEKA-EALAKEIAEKL---NKKFGEEVKFSGLDVDLDGVDII   87 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHH-TSSS-EEEEECSSHHHH-HHHHHHHHHHH---TCCHHHHEEEECTTCCCTTCCEE
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHH-cccc-ceeeehhhhhHH-HHHHHHHHHhh---chhhhhhhhhhhhhhccchhhhh
Confidence            468999999999999999999987 5777 999999987542 22222221110   00000111234566677889999


Q ss_pred             EEcCCCChhhh-ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020301          241 SLHPVLDKTTY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (328)
Q Consensus       241 ~l~~plt~~t~-~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~  288 (328)
                      +.+.|...... ..-....+..++++.+++++.=-+..  ..|.++.++
T Consensus        88 In~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~--T~l~~~a~~  134 (177)
T d1nvta1          88 INATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLE--TVLLKEAKK  134 (177)
T ss_dssp             EECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSS--CHHHHHHHT
T ss_pred             ccCCcccccccccccchhhhhccCcccceeeecCCcHh--HHHHHHHHH
Confidence            99999643221 11111224456778888887543322  344444443

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.96  E-value=0.0024  Score=50.35  Aligned_cols=105  Identities=19%  Similarity=0.276  Sum_probs=57.3

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~p  245 (328)
                      ++|+|||.|.+|..+|-.++..--.+++.+|...........+-....... .. ........+.++ ++.||+|+++..
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~-~~-~~~i~~~~d~~~-~~~advvvitag   78 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIE-GF-DVRVTGTNNYAD-TANSDVIVVTSG   78 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHH-TC-CCCEEEESCGGG-GTTCSEEEECCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhcccccc-CC-CCEEEecCcHHH-hcCCCEEEEeee
Confidence            589999999999999987653222489999987654322222211000000 00 011111234554 689999999984


Q ss_pred             C--Ch-hhh-ccc--cH-------HHHhcCCCCcEEEEcCC
Q 020301          246 L--DK-TTY-HLI--NK-------ERLATMKKEAILVNCSR  273 (328)
Q Consensus       246 l--t~-~t~-~li--~~-------~~~~~mk~ga~lIN~aR  273 (328)
                      .  .+ +++ .++  |.       +.+.+..|++++++++-
T Consensus        79 ~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtN  119 (142)
T d1uxja1          79 APRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  119 (142)
T ss_dssp             CC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSS
T ss_pred             ccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCC
Confidence            2  22 222 221  11       13344467899999865

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.94  E-value=0.00079  Score=55.49  Aligned_cols=79  Identities=15%  Similarity=0.142  Sum_probs=45.9

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHHhhhhhhhh--cCCC---CCccccccCCHHHHhhcCCEE
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLK--ANGE---QPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~-d~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~l~ell~~aDiV  240 (328)
                      +|||.|||+||+.++|.+...=+++|.+. |+.+......... |+....  .+..   .........++.++++++|+|
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiV   81 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHR-RGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHH-TTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcc-cCcceeccCccceeccccceecCCchhhhhhcCCEE
Confidence            69999999999999999754447888876 4443322211111 100000  0000   000111123678888999999


Q ss_pred             EEcCCC
Q 020301          241 SLHPVL  246 (328)
Q Consensus       241 ~l~~pl  246 (328)
                      +-|.|.
T Consensus        82 iecTG~   87 (178)
T d1b7go1          82 VDTTPN   87 (178)
T ss_dssp             EECCST
T ss_pred             EECCCC
Confidence            999884

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.91  E-value=0.0011  Score=51.92  Aligned_cols=97  Identities=20%  Similarity=0.185  Sum_probs=65.1

Q ss_pred             ccCCCEEEEEec----------CHHHHHHHHHHHhcCCcEEEEEcCCchhHH-----HHHHhhhhhhhhcCCCCCccccc
Q 020301          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRL-----EKFVTAYGQFLKANGEQPVTWKR  226 (328)
Q Consensus       162 ~l~g~tvgIiG~----------G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  226 (328)
                      .+.+++|||+|+          ++-...+++.| ...|++|.+|||......     .++...        .........
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L-~~~g~~V~~~DP~v~~~~~~~~~~~~~~~--------~~~~~~~~~   80 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEML-IGKGYELRIFDRNVEYARVHGANKEYIES--------KIPHVSSLL   80 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECHHHHHHTTSSSCHHHHHH--------TSHHHHTTB
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHH-hhhhccccccCCCCCHHHHhhhhhhhhhh--------cccccccee
Confidence            467889999998          46677899987 688999999999654210     000000        000011123


Q ss_pred             cCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCC
Q 020301          227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (328)
Q Consensus       227 ~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG  274 (328)
                      ..+++++++.||+|+++.+- ++.     .+....++++.+++++ ||
T Consensus        81 ~~~~~e~i~~~D~ivi~t~h-~~f-----~~l~~~~~~~~~I~D~-~~  121 (136)
T d1mv8a3          81 VSDLDEVVASSDVLVLGNGD-ELF-----VDLVNKTPSGKKLVDL-VG  121 (136)
T ss_dssp             CSCHHHHHHHCSEEEECSCC-GGG-----HHHHHSCCTTCEEEES-SS
T ss_pred             ehhhhhhhhhceEEEEEeCC-HHH-----HHHHHHhcCCCEEEEC-CC
Confidence            57999999999999999883 332     2345567788899998 44

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.88  E-value=0.0007  Score=55.34  Aligned_cols=94  Identities=17%  Similarity=0.190  Sum_probs=58.2

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHH-Hhh-----c
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLR-----E  236 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~-----~  236 (328)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.|++..+.  +....+       |....-.....++.+ +.+     .
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~a-k~~Ga~~Vi~~d~~~~r~--~~a~~l-------Ga~~~i~~~~~~~~~~v~~~t~g~G   96 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGA-KLRGAGRIIGVGSRPICV--EAAKFY-------GATDILNYKNGHIEDQVMKLTNGKG   96 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HTTTCSCEEEECCCHHHH--HHHHHH-------TCSEEECGGGSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEEcCCcchhhhhhhh-hcccccccccccchhhhH--HHHHhh-------CccccccccchhHHHHHHHHhhccC
Confidence            478899999999999999985 89998 799999986542  111222       221111111123333 222     2


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      .|+|+-+++.. ++   + +..++.++|+..++-++
T Consensus        97 ~D~vid~~g~~-~~---~-~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          97 VDRVIMAGGGS-ET---L-SQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             EEEEEECSSCT-TH---H-HHHHHHEEEEEEEEECC
T ss_pred             cceEEEccCCH-HH---H-HHHHHHHhcCCEEEEEe
Confidence            78888887632 21   2 44566677777777765

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.80  E-value=0.0033  Score=51.01  Aligned_cols=81  Identities=14%  Similarity=0.155  Sum_probs=46.4

Q ss_pred             CEEEEEecCHHH--HHHHHHHH--hcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          166 QTVGVIGAGRIG--SAYARMMV--EGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       166 ~tvgIiG~G~IG--~~vA~~l~--~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .++.|||.|++|  ..++..++  +.|. -++..+|........+..+...+........+......++..+.++.||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            379999999776  44544432  1343 589999987653222222211111111111122233446888899999999


Q ss_pred             EEcCCC
Q 020301          241 SLHPVL  246 (328)
Q Consensus       241 ~l~~pl  246 (328)
                      +++...
T Consensus        82 v~ta~~   87 (169)
T d1s6ya1          82 TTQFRV   87 (169)
T ss_dssp             EECCCT
T ss_pred             EEcccc
Confidence            999864

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.00077  Score=53.54  Aligned_cols=47  Identities=15%  Similarity=0.132  Sum_probs=39.2

Q ss_pred             cccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH
Q 020301          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF  206 (328)
Q Consensus       159 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~  206 (328)
                      ....|.||++.|||.|.+|.+-|+.| ..+|++|.+++|...+.....
T Consensus         7 l~~~l~gkrvLViGgG~va~~ka~~L-l~~GA~VtVvap~~~~~l~~~   53 (150)
T d1kyqa1           7 LAHQLKDKRILLIGGGEVGLTRLYKL-MPTGCKLTLVSPDLHKSIIPK   53 (150)
T ss_dssp             EEECCTTCEEEEEEESHHHHHHHHHH-GGGTCEEEEEEEEECTTHHHH
T ss_pred             hheeeCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCHHHHHH
Confidence            34679999999999999999999997 588999999988765554443

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.75  E-value=0.0015  Score=52.34  Aligned_cols=94  Identities=14%  Similarity=0.214  Sum_probs=58.8

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH----hhcCCE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADV  239 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDi  239 (328)
                      .|.+|.|+|.|.+|...++.+ +.+|++|++.|+++.+.  +.       +++-|....-.....+..+.    ....|.
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~a-k~~G~~Vi~~~~~~~~~--~~-------a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~   96 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYA-RAMGLHVAAIDIDDAKL--EL-------ARKLGASLTVNARQEDPVEAIQRDIGGAHG   96 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH--HH-------HHHTTCSEEEETTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEeeccccHHHHHHHH-HHcCCccceecchhhHH--Hh-------hhccCccccccccchhHHHHHHHhhcCCcc
Confidence            478999999999999999985 89999999999886542  11       12223222111112233222    223455


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      ++.+... +++   + +..++.++++..++.++
T Consensus        97 ~i~~~~~-~~~---~-~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          97 VLVTAVS-NSA---F-GQAIGMARRGGTIALVG  124 (166)
T ss_dssp             EEECCSC-HHH---H-HHHHTTEEEEEEEEECC
T ss_pred             ccccccc-chH---H-HHHHHHhcCCcEEEEEE
Confidence            5555542 332   2 45678888888888875

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=96.73  E-value=0.00097  Score=57.60  Aligned_cols=67  Identities=16%  Similarity=0.174  Sum_probs=56.7

Q ss_pred             cccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          225 KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       225 ~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      ...++..|+++.||+|++++|..+.+..++ ++....+++|++++|++.........+.+.|++..+.
T Consensus       130 ~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~  196 (242)
T d2b0ja2         130 KVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN  196 (242)
T ss_dssp             EEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE
T ss_pred             EEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE
Confidence            345789999999999999999776777777 7788999999999999998887788888888765544

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.68  E-value=0.005  Score=48.99  Aligned_cols=106  Identities=16%  Similarity=0.256  Sum_probs=58.8

Q ss_pred             CCEEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      ..+|+|||.|.+|+.+|..+.. .+ .++..||+..........+- .....-.+. .... ...+-.+.++.||+|+++
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl-~~~~~~~~~-~~~v-~~~~~~~~~~~advvvit   78 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDT-SHTNVMAYS-NCKV-SGSNTYDDLAGADVVIVT   78 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHH-HTHHHHHTC-CCCE-EEECCGGGGTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecch-hhhccccCC-CcEE-EecccccccCCCcEEEEe
Confidence            4689999999999999987643 33 48999998764321111111 000000011 0011 112334567999999988


Q ss_pred             CCCChh---h-----h-ccc--cHH-------HHhcCCCCcEEEEcCCC
Q 020301          244 PVLDKT---T-----Y-HLI--NKE-------RLATMKKEAILVNCSRG  274 (328)
Q Consensus       244 ~plt~~---t-----~-~li--~~~-------~~~~mk~ga~lIN~aRG  274 (328)
                      .-....   +     + .++  |..       .+.+..|++++++++..
T Consensus        79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP  127 (150)
T d1t2da1          79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP  127 (150)
T ss_dssp             CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            763221   1     2 111  211       23444589999999764

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.63  E-value=0.0055  Score=49.33  Aligned_cols=108  Identities=14%  Similarity=0.208  Sum_probs=62.7

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      ..+..++|+|||.|++|..+|-.++ ..|  -++..||...+....+..|-... ...... . ......+ .+-++.||
T Consensus        16 ~~~~~~KV~IIGaG~VG~~~A~~l~-~~~l~~ElvLiD~~~~~a~g~alDl~h~-~~~~~~-~-~~~~~~d-~~~~~~ad   90 (160)
T d1i0za1          16 ATVPNNKITVVGVGQVGMACAISIL-GKSLADELALVDVLEDKLKGEMMDLQHG-SLFLQT-P-KIVADKD-YSVTANSK   90 (160)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHH-HTTCCSEEEEECSCHHHHHHHHHHHHHT-GGGCCC-S-EEEECSS-GGGGTTCS
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHH-hcCCCcEEEEEEeccchhHHHHHHHhcc-ccccCC-C-eEEeccc-hhhccccc
Confidence            3466789999999999999999864 444  48999999865432222221110 000011 1 1112234 35579999


Q ss_pred             EEEEcCCCC--h-hhhc-cc--c-------HHHHhcCCCCcEEEEcCC
Q 020301          239 VISLHPVLD--K-TTYH-LI--N-------KERLATMKKEAILVNCSR  273 (328)
Q Consensus       239 iV~l~~plt--~-~t~~-li--~-------~~~~~~mk~ga~lIN~aR  273 (328)
                      +|+++.-..  + +|+- ++  |       ...+....|++++|+++.
T Consensus        91 iVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN  138 (160)
T d1i0za1          91 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN  138 (160)
T ss_dssp             EEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             EEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            999875432  2 2332 11  1       123344468899999965

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.57  E-value=0.0019  Score=51.65  Aligned_cols=94  Identities=15%  Similarity=0.223  Sum_probs=59.8

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH----HHHhhcCCE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVLREADV  239 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ell~~aDi  239 (328)
                      .|.+|.|.|.|.||...++.+ +.+|.+|++.+++++..  ++       +++.|..........++    .+.-...|.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a-~~~g~~v~~~~~~~~r~--~~-------~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~   96 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYA-KAMGLNVVAVDIGDEKL--EL-------AKELGADLVVNPLKEDAAKFMKEKVGGVHA   96 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHH--HH-------HHHTTCSEEECTTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEeecccchhhhhHHH-hcCCCeEeccCCCHHHh--hh-------hhhcCcceecccccchhhhhcccccCCCce
Confidence            478999999999999998885 79999999999876542  12       22223322222122233    333444566


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      ++.+.+ .+++    -+..+..++++..++.++
T Consensus        97 ~v~~~~-~~~~----~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          97 AVVTAV-SKPA----FQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             EEESSC-CHHH----HHHHHHHEEEEEEEEECC
T ss_pred             EEeecC-CHHH----HHHHHHHhccCCceEecc
Confidence            666654 3332    256677788888888774

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.0016  Score=52.47  Aligned_cols=93  Identities=18%  Similarity=0.313  Sum_probs=62.0

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC---HHHHhhcCCEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREADVI  240 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~aDiV  240 (328)
                      .|.+|.|+|.|.+|...++.+ +.+|+++++.+++.+..  ++...+       |.....  ...+   ..+..+..|++
T Consensus        30 ~G~~VlI~GaG~vG~~a~qla-k~~Ga~~i~~~~~~~~~--~~a~~l-------Gad~~i--~~~~~~~~~~~~~~~D~v   97 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLA-HAMGAHVVAFTTSEAKR--EAAKAL-------GADEVV--NSRNADEMAAHLKSFDFI   97 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSGGGH--HHHHHH-------TCSEEE--ETTCHHHHHTTTTCEEEE
T ss_pred             CCCEEEEeccchHHHHHHHHh-hcccccchhhccchhHH--HHHhcc-------CCcEEE--ECchhhHHHHhcCCCcee
Confidence            488999999999999999984 89999999999876542  122222       221111  1111   22334568999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      +-++.... +    -...++.++++..++.++.
T Consensus        98 id~~g~~~-~----~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2          98 LNTVAAPH-N----LDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             EECCSSCC-C----HHHHHTTEEEEEEEEECCC
T ss_pred             eeeeecch-h----HHHHHHHHhcCCEEEEecc
Confidence            98887322 1    2455778888888888864

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.48  E-value=0.0018  Score=52.51  Aligned_cols=95  Identities=11%  Similarity=0.088  Sum_probs=60.0

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc-----C
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-----A  237 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-----a  237 (328)
                      .|.+|.|+|.|.||...++.+ +.+|++ |++.|+++.+.  +..+++       |....-.....++.+.+++     .
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~a-k~~g~~~v~~~~~~~~k~--~~a~~~-------Ga~~~i~~~~~~~~~~i~~~t~gg~   97 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAA-KVCGASIIIAVDIVESRL--ELAKQL-------GATHVINSKTQDPVAAIKEITDGGV   97 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHH-HHHTCSEEEEEESCHHHH--HHHHHH-------TCSEEEETTTSCHHHHHHHHTTSCE
T ss_pred             CCCEEEEeCCCHHHhhhhhcc-cccccceeeeeccHHHHH--HHHHHc-------CCeEEEeCCCcCHHHHHHHHcCCCC
Confidence            588999999999999999985 788885 55667765432  122222       2221111122344443322     6


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      |+|+-|+.. +++    .+..++.++++..++.++-
T Consensus        98 D~vid~~G~-~~~----~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          98 NFALESTGS-PEI----LKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             EEEEECSCC-HHH----HHHHHHTEEEEEEEEECCC
T ss_pred             cEEEEcCCc-HHH----HHHHHhcccCceEEEEEee
Confidence            999988772 332    2456788899998888763

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.48  E-value=0.0035  Score=52.93  Aligned_cols=72  Identities=13%  Similarity=0.175  Sum_probs=47.9

Q ss_pred             CCEEEEEecCHHHHH-HHHHHHhcC-CcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh--cCCE
Q 020301          165 GQTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (328)
Q Consensus       165 g~tvgIiG~G~IG~~-vA~~l~~~f-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  239 (328)
                      --+|||||+|.+|+. ++..+ +.. +++|. ++|++++.. +.+.+.|       +........+.++++++.  +.|+
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~-~~~~~~~ivav~d~~~~~a-~~~~~~~-------~i~~~~~~~~~d~~ell~~~~iD~  103 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGF-AGCQHSRIEALVSGNAEKA-KIVAAEY-------GVDPRKIYDYSNFDKIAKDPKIDA  103 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHT-TTCSSEEEEEEECSCHHHH-HHHHHHT-------TCCGGGEECSSSGGGGGGCTTCCE
T ss_pred             CEEEEEEcCcHHHHHHHHHHH-HhCCCceEEEEecCCHHHH-HHHHHhh-------ccccccccccCchhhhccccccee
Confidence            347999999999974 56654 344 78877 678876542 2322222       333333334578999986  4789


Q ss_pred             EEEcCC
Q 020301          240 ISLHPV  245 (328)
Q Consensus       240 V~l~~p  245 (328)
                      |+++.|
T Consensus       104 V~I~tp  109 (221)
T d1h6da1         104 VYIILP  109 (221)
T ss_dssp             EEECSC
T ss_pred             eeeccc
Confidence            999998

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.45  E-value=0.002  Score=52.47  Aligned_cols=117  Identities=11%  Similarity=0.070  Sum_probs=64.3

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      ..+.||++.|+|.|-.+++++..|. .-+.+|++++|+.+. .+...+.+...    +  ..  ......+..+..+|+|
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~-~~~~~i~I~nR~~~~-a~~l~~~~~~~----~--~~--~~~~~~~~~~~~~dii   83 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLL-QAQQNIVLANRTFSK-TKELAERFQPY----G--NI--QAVSMDSIPLQTYDLV   83 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHH-HTTCEEEEEESSHHH-HHHHHHHHGGG----S--CE--EEEEGGGCCCSCCSEE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHc-ccCceeeeccchHHH-HHHHHHHHhhc----c--cc--chhhhcccccccccee
Confidence            3678999999999999999999875 567899999999753 23333322210    1  00  0001112236789999


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      +.|.|..-....  ....+..++++..+++..=.....+.-|..|=+.|
T Consensus        84 IN~tp~g~~~~~--~~~~~~~~~~~~~~~D~vy~~p~~T~~l~~A~~~g  130 (171)
T d1p77a1          84 INATSAGLSGGT--ASVDAEILKLGSAFYDMQYAKGTDTPFIALCKSLG  130 (171)
T ss_dssp             EECCCC---------CCCHHHHHHCSCEEESCCCTTSCCHHHHHHHHTT
T ss_pred             eecccccccccc--cchhhhhhcccceeeeeeccCcccHHHHHHHHHcC
Confidence            999996532211  11112223455556665333333333344444444

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.44  E-value=0.015  Score=45.60  Aligned_cols=105  Identities=15%  Similarity=0.216  Sum_probs=59.2

Q ss_pred             CEEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      .+|+|||.|.+|..+|-.++ +++--++..||........+..| ..+....-.... ......+. +.++.||+|++..
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alD-l~~~~~~~~~~~-~i~~~~d~-~~~~~adiVvita   77 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMD-LAHAAAGIDKYP-KIVGGADY-SLLKGSEIIVVTA   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHH-HHHHHHTTTCCC-EEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHH-HhhhccccCCCC-ccccCCCH-HHhccccEEEEec
Confidence            37999999999999998764 24445799999876442211111 100000001111 11122344 5789999999886


Q ss_pred             C--CChh-hh-ccc--c-------HHHHhcCCCCcEEEEcCC
Q 020301          245 V--LDKT-TY-HLI--N-------KERLATMKKEAILVNCSR  273 (328)
Q Consensus       245 p--lt~~-t~-~li--~-------~~~~~~mk~ga~lIN~aR  273 (328)
                      .  .++. ++ .++  |       .+.+.+..|.+++++++-
T Consensus        78 g~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1ojua1          78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (142)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             cccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence            4  2221 11 111  1       223455568899999976

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.44  E-value=0.0063  Score=49.46  Aligned_cols=68  Identities=16%  Similarity=0.295  Sum_probs=45.1

Q ss_pred             CEEEEEecCHHHHHH-HHHHHhcCC--cEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc--CCE
Q 020301          166 QTVGVIGAGRIGSAY-ARMMVEGFK--MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV  239 (328)
Q Consensus       166 ~tvgIiG~G~IG~~v-A~~l~~~fg--~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDi  239 (328)
                      -++||||+|.+|+.+ +..+ +.++  ++|. ++|++.... +.+.+.|       +.    ...+.+++|+++.  .|+
T Consensus         4 irigiIG~G~~g~~~h~~~l-~~~~~~~~i~~v~d~~~~~~-~~~~~~~-------~~----~~~~~~~~ell~~~~id~   70 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPAL-KNLSHLFEITAVTSRTRSHA-EEFAKMV-------GN----PAVFDSYEELLESGLVDA   70 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTTTTTEEEEEEECSSHHHH-HHHHHHH-------SS----CEEESCHHHHHHSSCCSE
T ss_pred             cEEEEEcCCHHHHHHHHHHH-HhCCCCeEEEEEEeccHhhh-hhhhccc-------cc----cceeeeeeccccccccce
Confidence            379999999999874 6665 4443  5766 678876432 3333333       11    1135799999874  788


Q ss_pred             EEEcCCC
Q 020301          240 ISLHPVL  246 (328)
Q Consensus       240 V~l~~pl  246 (328)
                      |+++.|.
T Consensus        71 v~I~tp~   77 (181)
T d1zh8a1          71 VDLTLPV   77 (181)
T ss_dssp             EEECCCG
T ss_pred             eeccccc
Confidence            9999983

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.40  E-value=0.0041  Score=49.09  Aligned_cols=104  Identities=17%  Similarity=0.248  Sum_probs=59.3

Q ss_pred             CEEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      .+|+|||.|.+|..+|-.++ +++.-++..+|..+.....+..| ........+.  .......+.+ .++.||+|+++.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~D-l~~a~~~~~~--~~i~~~~~~~-~~~daDvVVita   77 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLD-MQHGSSFYPT--VSIDGSDDPE-ICRDADMVVITA   77 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHH-HHHTGGGSTT--CEEEEESCGG-GGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHH-HHhccccCCC--ceeecCCCHH-HhhCCcEEEEec
Confidence            47999999999999997653 35556899999886543221111 1000000111  1112233444 588999999886


Q ss_pred             CC--Ch-hhh-ccc--c-------HHHHhcCCCCcEEEEcCC
Q 020301          245 VL--DK-TTY-HLI--N-------KERLATMKKEAILVNCSR  273 (328)
Q Consensus       245 pl--t~-~t~-~li--~-------~~~~~~mk~ga~lIN~aR  273 (328)
                      -.  .+ +|+ .++  |       ...+....|++++|+++-
T Consensus        78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  119 (143)
T d1llda1          78 GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITN  119 (143)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred             ccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence            42  12 122 111  1       123445568899999863

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.009  Score=47.15  Aligned_cols=106  Identities=21%  Similarity=0.212  Sum_probs=61.0

Q ss_pred             EEEEEec-CHHHHHHHHHHH-h-cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCC-CccccccCCHHHHhhcCCEEEE
Q 020301          167 TVGVIGA-GRIGSAYARMMV-E-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       167 tvgIiG~-G~IG~~vA~~l~-~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      +|+|||. |++|+.+|-.|+ + ++.-++..+|..+... .+..+ +    .+.... ........+..+.++.||+|++
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~-g~a~D-l----~h~~~~~~~~~~~~~~~~~~~~~aDvvvi   75 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTP-GVAVD-L----SHIPTAVKIKGFSGEDATPALEGADVVLI   75 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHH-HHHHH-H----HTSCSSCEEEEECSSCCHHHHTTCSEEEE
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccch-hHHHH-H----HCCccccCCcEEEcCCCccccCCCCEEEE
Confidence            7999995 999999998754 3 5678999999754321 11111 1    111111 1111111333456899999999


Q ss_pred             cCC--CChh-hh-ccc--c-------HHHHhcCCCCcEEEEcCCCcccCHH
Q 020301          243 HPV--LDKT-TY-HLI--N-------KERLATMKKEAILVNCSRGPVIDEV  280 (328)
Q Consensus       243 ~~p--lt~~-t~-~li--~-------~~~~~~mk~ga~lIN~aRG~~vde~  280 (328)
                      +.-  .++. ++ .++  |       .+.+.+..|++++|.++.  .+|.-
T Consensus        76 taG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN--PvD~m  124 (145)
T d2cmda1          76 SAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN--PVNTT  124 (145)
T ss_dssp             CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--SHHHH
T ss_pred             CCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC--CchHH
Confidence            863  2332 22 222  1       224445568999999965  45543

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.35  E-value=0.0025  Score=51.98  Aligned_cols=80  Identities=21%  Similarity=0.182  Sum_probs=43.9

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHHhhhhhhhhc--CCC----CCccccccCCHHHHhhcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKA--NGE----QPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~-d~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~l~ell~~aD  238 (328)
                      .+|||.|||+||+.++|.+...-.++|.+. |+.+.... .+...|+-....  .+.    ...+.....++.++++.+|
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD   81 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEA-YRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVD   81 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHH-HHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCS
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHH-HHhhhcCceeecccccceeeecccCccccchhhhhhccCC
Confidence            479999999999999998754456887755 44433221 111111100000  000    0000111236777788888


Q ss_pred             EEEEcCCC
Q 020301          239 VISLHPVL  246 (328)
Q Consensus       239 iV~l~~pl  246 (328)
                      +|+=|.|.
T Consensus        82 vViEcTG~   89 (172)
T d2czca2          82 IIVDATPG   89 (172)
T ss_dssp             EEEECCST
T ss_pred             EEEECCCC
Confidence            88888774

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.34  E-value=0.0048  Score=49.65  Aligned_cols=107  Identities=14%  Similarity=0.137  Sum_probs=60.7

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      +...+|+|||.|.+|..+|..++ +++.-++..||........+..|-. ......+ .. ......+.+ .++.||+|+
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~-~~~~~~~-~~-~~~~~~d~~-~~~~adivv   92 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQ-HGSLFLS-TP-KIVFGKDYN-VSANSKLVI   92 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHH-HTTTTCS-CC-EEEEESSGG-GGTTEEEEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHh-CcchhcC-CC-eEEeccchh-hhccccEEE
Confidence            55568999999999999999864 2334489999988654322222211 0000001 01 111223444 459999998


Q ss_pred             EcCCC--Ch-hhh-ccc--cHHH-------HhcCCCCcEEEEcCC
Q 020301          242 LHPVL--DK-TTY-HLI--NKER-------LATMKKEAILVNCSR  273 (328)
Q Consensus       242 l~~pl--t~-~t~-~li--~~~~-------~~~mk~ga~lIN~aR  273 (328)
                      ++...  .+ +++ .++  |.+.       +....|++++++++.
T Consensus        93 itag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          93 ITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             ECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             EecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            87642  22 232 222  2222       233468999999976

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=96.34  E-value=0.0049  Score=53.39  Aligned_cols=123  Identities=15%  Similarity=0.144  Sum_probs=70.6

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEc--------CCch--hHHHHHHhhhhhhhhcCCCCC----ccccc
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD--------LYQA--TRLEKFVTAYGQFLKANGEQP----VTWKR  226 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d--------~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~  226 (328)
                      .+|.|+|+.|=|+|++|+.+|+.| ...|++|++.+        +.--  +.+-++....... .......    .+.. 
T Consensus        32 ~~l~g~~v~IQGfGnVG~~~a~~L-~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-  108 (255)
T d1bgva1          32 DTLVGKTVALAGFGNVAWGAAKKL-AELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRAS-GRNKVQDYADKFGVQ-  108 (255)
T ss_dssp             CCSTTCEEEECCSSHHHHHHHHHH-HHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHH-CCCCTHHHHHHHTCE-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhh-cCcchhhhhhhcCce-
Confidence            468999999999999999999997 68899998653        2211  1111111000000 0000000    0000 


Q ss_pred             cCCHHH-HhhcCCEEEEcCCCChhhhccccHHHHhcCCC-C-cEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          227 ASSMDE-VLREADVISLHPVLDKTTYHLINKERLATMKK-E-AILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       227 ~~~l~e-ll~~aDiV~l~~plt~~t~~li~~~~~~~mk~-g-a~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      ..+.++ +-..||+++-|     .+.+.|+.+..++++. + .+++--+-+++-++ +.-..|+++.|.
T Consensus       109 ~~~~~~~~~~~~DiliPc-----A~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~e-a~~~ll~~~gI~  171 (255)
T d1bgva1         109 FFPGEKPWGQKVDIIMPC-----ATQNDVDLEQAKKIVANNVKYYIEVANMPTTNE-ALRFLMQQPNMV  171 (255)
T ss_dssp             EEETCCGGGSCCSEEECC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-HHHHHHHCTTCE
T ss_pred             eechhhcccccccEEeec-----cccccccHHHHHhhhhcCceEEecCCCCCcchH-HHHHHHHhcCCE
Confidence            011112 23479999755     4578889888888764 3 37888888886665 433456654443

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.24  E-value=0.0021  Score=51.52  Aligned_cols=35  Identities=14%  Similarity=0.299  Sum_probs=30.8

Q ss_pred             CEEEEE-ecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          166 QTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       166 ~tvgIi-G~G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .||+|| |.|.||+.+|++| ...|.+|.+++|++++
T Consensus         1 Mki~vigGaG~iG~alA~~l-a~~G~~V~l~~R~~e~   36 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRL-ATLGHEIVVGSRREEK   36 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            379999 7899999999998 4789999999998753

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.17  E-value=0.0037  Score=50.91  Aligned_cols=80  Identities=19%  Similarity=0.174  Sum_probs=44.1

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEc-CCchhHHHHHHhhhhhhhhcCCCCC-------ccccccCCHHHHhhcC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQATRLEKFVTAYGQFLKANGEQP-------VTWKRASSMDEVLREA  237 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~ell~~a  237 (328)
                      ++|||-|||+||+.+.|.+...=.++|.+.+ +.+..... +.-.|.-.. ..+...       .......+..++++++
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~-~l~~~~~~~-~~~~~~~~~~~~~~~~~v~g~~~~~~~~v   79 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEAR-MALKKGYDL-YVAIPERVKLFEKAGIEVAGTVDDMLDEA   79 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHH-HHHHTTCCE-EESSGGGHHHHHHTTCCCCEEHHHHHHTC
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHH-HHHhcCCce-EecccccceeecccCcccCCChhHhhcCC
Confidence            5899999999999999987544458877654 44332211 111110000 000000       0000112567788899


Q ss_pred             CEEEEcCCCC
Q 020301          238 DVISLHPVLD  247 (328)
Q Consensus       238 DiV~l~~plt  247 (328)
                      |+|+=|.|.-
T Consensus        80 DvViEcTG~f   89 (171)
T d1cf2o1          80 DIVIDCTPEG   89 (171)
T ss_dssp             SEEEECCSTT
T ss_pred             CEEEEccCCC
Confidence            9999888743

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.17  E-value=0.017  Score=46.27  Aligned_cols=112  Identities=14%  Similarity=0.208  Sum_probs=71.4

Q ss_pred             ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCch---hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (328)
Q Consensus       162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (328)
                      .|.|++|++||=|+ +.++++..+ ..||+++..+.|..-   +...+....+.   ..   .........++++.++.|
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~d~~ea~~~a   73 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAG-TKLGADVVVATPEGYEPDEKVIKWAEQNA---AE---SGGSFELLHDPVKAVKDA   73 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTCCCCHHHHHHHHHHH---HH---HTCEEEEESCHHHHTTTC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHH-HHcCCeEEEecccccCCChHHHHHHHHhh---hc---ccceEEEecCHHHHhhhc
Confidence            37899999999754 667888876 689999999987521   11111111110   00   001123456899999999


Q ss_pred             CEEEEcCCCC------hh------hhccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 020301          238 DVISLHPVLD------KT------TYHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (328)
Q Consensus       238 DiV~l~~plt------~~------t~~li~~~~~~~mk~ga~lIN~a---RG~~vde~  280 (328)
                      |+|..-.=..      .+      ....++.+.++.+|++++|.=..   ||.=|+.+
T Consensus        74 dviy~~~~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHplP~~Rg~EI~~~  131 (163)
T d1pvva2          74 DVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDD  131 (163)
T ss_dssp             SEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             cEEeecceeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCCccccccccchh
Confidence            9997643111      11      12357899999999999998773   66655554

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=96.13  E-value=0.014  Score=45.33  Aligned_cols=102  Identities=10%  Similarity=0.115  Sum_probs=71.4

Q ss_pred             CCCEEEEEec----CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          164 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       164 ~g~tvgIiG~----G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      .-|+++|||.    ++.|..+.+.| +.+|.++..+.+.+...                 .-.+...+.++.++-..-|+
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L-~~~g~~~~~v~~~~~~~-----------------~i~g~~~~~~l~~i~~~iD~   73 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYL-REQGYRVLPVNPRFQGE-----------------ELFGEEAVASLLDLKEPVDI   73 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHH-HHTTCEEEEECGGGTTS-----------------EETTEECBSSGGGCCSCCSE
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHH-hcCCCCceEEEeccccc-----------------eeeceecccchhhccCCCce
Confidence            4578999997    78999999997 68999999998865320                 11123345788888888999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      +++++| .+.+..++.+ ..+ +...++++..+   ..++++...|.+.|
T Consensus        74 v~v~~p-~~~v~~~v~~-~~~-~g~k~i~~q~G---~~~~e~~~~a~~~G  117 (136)
T d1iuka_          74 LDVFRP-PSALMDHLPE-VLA-LRPGLVWLQSG---IRHPEFEKALKEAG  117 (136)
T ss_dssp             EEECSC-HHHHTTTHHH-HHH-HCCSCEEECTT---CCCHHHHHHHHHTT
T ss_pred             EEEecc-HHHHHHHHHH-HHh-hCCCeEEEecC---ccCHHHHHHHHHcC
Confidence            999999 3445565543 333 45677888664   45666666665555

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.021  Score=45.76  Aligned_cols=114  Identities=17%  Similarity=0.144  Sum_probs=69.9

Q ss_pred             ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .|.|+||++||=|+ +-.+++..+ ..||+++.+..|.......+..+...+.....+.   ......++++.+..+|+|
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~-~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~---~i~~~~d~~~~~~~advi   76 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSA-AKFGMHLQAATPKGYEPDASVTKLAEQYAKENGT---KLLLTNDPLEAAHGGNVL   76 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTT-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTC---CEEEESCHHHHHTTCSEE
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHH-HHcCCEEEEEeccccCCchHHHHHHHHHHhccCC---EEEEEcCHHHHHhhhhhe
Confidence            37899999999764 445556654 5789999999875321111111110011111121   123457899999999999


Q ss_pred             EEcCCCChh------------hhccccHHHHhcCCCCcEEEEcC--CCcccCH
Q 020301          241 SLHPVLDKT------------TYHLINKERLATMKKEAILVNCS--RGPVIDE  279 (328)
Q Consensus       241 ~l~~plt~~------------t~~li~~~~~~~mk~ga~lIN~a--RG~~vde  279 (328)
                      ....-....            ....++.+.++.++++++|.-..  |+..++.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHplP~~~~ei~~  129 (170)
T d1otha2          77 ITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLPRKPEEVDD  129 (170)
T ss_dssp             EECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSCCCTTTBCH
T ss_pred             eeeceecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCCCccCcccch
Confidence            876553322            12346888999999999999883  4433443

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0026  Score=52.56  Aligned_cols=74  Identities=11%  Similarity=0.083  Sum_probs=49.8

Q ss_pred             CCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCc--cccccCCHHHHhhcCCEE
Q 020301          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVI  240 (328)
Q Consensus       164 ~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV  240 (328)
                      ..|+|.|+| .|.||+.+++.|. .-|.+|.++.|++.+..+.         ...+..-.  ......+++++++.+|+|
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll-~~g~~V~~~~R~~~~~~~~---------~~~~~~~~~gD~~d~~~l~~al~~~d~v   71 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAV-QAGYEVTVLVRDSSRLPSE---------GPRPAHVVVGDVLQAADVDKTVAGQDAV   71 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCGGGSCSS---------SCCCSEEEESCTTSHHHHHHHHTTCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCcCEEEEEEcChhhcccc---------cccccccccccccchhhHHHHhcCCCEE
Confidence            468999999 6999999999874 6699999999876542110         01111100  111223567889999999


Q ss_pred             EEcCCCC
Q 020301          241 SLHPVLD  247 (328)
Q Consensus       241 ~l~~plt  247 (328)
                      +.++...
T Consensus        72 i~~~g~~   78 (205)
T d1hdoa_          72 IVLLGTR   78 (205)
T ss_dssp             EECCCCT
T ss_pred             EEEeccC
Confidence            9888643

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0059  Score=49.17  Aligned_cols=96  Identities=17%  Similarity=0.233  Sum_probs=62.4

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh------c
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR------E  236 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------~  236 (328)
                      .|.+|.|.|. |.+|....+. ++.+|++|++.++++++.  ++       +++.|....-..+..++.+-+.      .
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~-a~~~G~~vi~~~~~~~~~--~~-------~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g   97 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQI-ARAYGLKILGTAGTEEGQ--KI-------VLQNGAHEVFNHREVNYIDKIKKYVGEKG   97 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHH-HHHTTCEEEEEESSHHHH--HH-------HHHTTCSEEEETTSTTHHHHHHHHHCTTC
T ss_pred             CCCEEEEEecccccccccccc-ccccCccccccccccccc--cc-------ccccCcccccccccccHHHHhhhhhccCC
Confidence            5889999995 9999999998 489999999998765431  22       2222332222122234443332      2


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      .|+|+-++.  .++    -+..++.|+++..+|.++..+
T Consensus        98 ~d~v~d~~g--~~~----~~~~~~~l~~~G~iv~~G~~~  130 (174)
T d1yb5a2          98 IDIIIEMLA--NVN----LSKDLSLLSHGGRVIVVGSRG  130 (174)
T ss_dssp             EEEEEESCH--HHH----HHHHHHHEEEEEEEEECCCCS
T ss_pred             ceEEeeccc--HHH----HHHHHhccCCCCEEEEEecCC
Confidence            688877754  222    355788899999999986543

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.98  E-value=0.027  Score=44.75  Aligned_cols=114  Identities=18%  Similarity=0.234  Sum_probs=67.7

Q ss_pred             cCCCEEEEEec--CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          163 LKGQTVGVIGA--GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       163 l~g~tvgIiG~--G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      |.|++|++||=  .++-.+++..+ ..||+++....|..-...+.............+   .......++++.++.+|+|
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~-~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~---~~i~~~~d~~~ai~~aDvi   76 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIAC-AKMGMNFVACGPEELKPRSDVFKRCQEIVKETD---GSVSFTSNLEEALAGADVV   76 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHH-HHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHC---CEEEEESCHHHHHTTCSEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHH-HHcCCEEEEecchhhhhhhhHHHHHHHHHhhcC---CceEEEecHHHhhhhhhhe
Confidence            67999999994  57999999986 689999999988532111111000000011111   1223346899999999999


Q ss_pred             EEcCCCChh------------h-hccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 020301          241 SLHPVLDKT------------T-YHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (328)
Q Consensus       241 ~l~~plt~~------------t-~~li~~~~~~~mk~ga~lIN~a---RG~~vde~  280 (328)
                      ..-.-....            . ....+......+|++++|.=+.   ||.=|+.+
T Consensus        77 yt~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~lP~~r~~Eis~~  132 (161)
T d1vlva2          77 YTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYE  132 (161)
T ss_dssp             EECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHH
T ss_pred             eccceeeecccccchhhhccccceeeeehhhhcccCCCeeEecCCCcccccccchh
Confidence            765532111            1 1123344455688899988763   66555554

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.94  E-value=0.013  Score=47.40  Aligned_cols=79  Identities=14%  Similarity=0.274  Sum_probs=46.8

Q ss_pred             CCEEEEEecCHHHHHHHH--HHH--hcC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          165 GQTVGVIGAGRIGSAYAR--MMV--EGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~--~l~--~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      +.+++|||.|++|...+-  .++  +.+ +-++..+|..++.......+ ........ ..........+.+|.++.||+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~-~~~~~~~~-~~~~~i~~~td~~eaL~dad~   79 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTI-AKKYVEEV-GADLKFEKTMNLDDVIIDADF   79 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHH-HHHHHHHT-TCCCEEEEESCHHHHHTTCSE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHH-HHHHHHhc-CCCeEEEEeCChhhcccCCCe
Confidence            458999999999976432  122  233 35999999986532111111 00001111 122233345789999999999


Q ss_pred             EEEcCC
Q 020301          240 ISLHPV  245 (328)
Q Consensus       240 V~l~~p  245 (328)
                      |+++.-
T Consensus        80 Vv~~~~   85 (171)
T d1obba1          80 VINTAM   85 (171)
T ss_dssp             EEECCC
T ss_pred             Eeeecc
Confidence            998754

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.94  E-value=0.023  Score=44.91  Aligned_cols=105  Identities=22%  Similarity=0.301  Sum_probs=66.3

Q ss_pred             cCCCEEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       163 l~g~tvgIiG~---G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      |.|++|++||=   |++.++++..+ ..||+++.++-+..........      ...   .........++++.++.||+
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l-~~~g~~~~~~~p~~~~~~~~~~------~~~---~~~~~~~~~d~~eai~~aDv   70 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRIL-TRFRPKLVYLISPQLLRARKEI------LDE---LNYPVKEVENPFEVINEVDV   70 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHG-GGSCCSEEEEECCGGGCCCHHH------HTT---CCSCEEEESCGGGTGGGCSE
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHH-HHcCCeeEEEecccccccchhh------ccc---CCCeEEEEeCHHHHhhcCCe
Confidence            57999999996   56999999986 6899987655443211111100      111   11223345689999999999


Q ss_pred             EEEcCCCChh-----------hhccccHHHHhcCCCCcEEEEcC-CCccc
Q 020301          240 ISLHPVLDKT-----------TYHLINKERLATMKKEAILVNCS-RGPVI  277 (328)
Q Consensus       240 V~l~~plt~~-----------t~~li~~~~~~~mk~ga~lIN~a-RG~~v  277 (328)
                      |...--....           ..--++.+.++.+|++++|.-+. ||.=|
T Consensus        71 vy~~~~q~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~LPR~~EI  120 (153)
T d1pg5a2          71 LYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLPRVNEI  120 (153)
T ss_dssp             EEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCSCCSSSB
T ss_pred             EEEeeeeehhccchhHHHHHHHhhhhhHHHHhccCCCeEEecCCCCcCCc
Confidence            9653211110           11236889999999999988773 55433

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.93  E-value=0.0088  Score=47.97  Aligned_cols=74  Identities=14%  Similarity=0.229  Sum_probs=44.7

Q ss_pred             EEEEEecCHHHHHHHHH-HHh---cC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          167 TVGVIGAGRIGSAYARM-MVE---GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~-l~~---~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      ++.|||.|++|...+-. +++   .+ +-++..+|...... +...+ .......   .........+.++.++.||+|+
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~-~~~~d-~~~~~~~---~~~~~~~t~~~~~~l~~aDvVV   76 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQ-KIVVD-FVKRLVK---DRFKVLISDTFEGAVVDAKYVI   76 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHH-HHHHH-HHHHHHT---TSSEEEECSSHHHHHTTCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHH-HHHHH-HHHhhhc---cCceEEEecCcccccCCCCEEE
Confidence            69999999998776632 111   22 35899999987542 22111 1111111   1122223467889999999999


Q ss_pred             EcCC
Q 020301          242 LHPV  245 (328)
Q Consensus       242 l~~p  245 (328)
                      ++.-
T Consensus        77 ita~   80 (162)
T d1up7a1          77 FQFR   80 (162)
T ss_dssp             ECCC
T ss_pred             Eecc
Confidence            9875

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.85  E-value=0.0058  Score=49.37  Aligned_cols=94  Identities=14%  Similarity=0.141  Sum_probs=62.6

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh------hc
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  236 (328)
                      .|.+|.|.|. |.+|...++.+ +.+|++|++..++.++  .++       +++.|..........++.+-+      ..
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla-~~~g~~vi~~~~~~~~--~~~-------l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g   94 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIA-KMIGARIYTTAGSDAK--REM-------LSRLGVEYVGDSRSVDFADEILELTDGYG   94 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHHTCEEEEEESSHHH--HHH-------HHTTCCSEEEETTCSTHHHHHHHHTTTCC
T ss_pred             CCCEEEEECCCCCcccccchhh-ccccccceeeeccccc--ccc-------cccccccccccCCccCHHHHHHHHhCCCC
Confidence            4789999885 99999999985 8999999998876543  122       223333322222223453333      34


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .|+++.++.  .++    -+..++.++++..+|+++.
T Consensus        95 ~d~v~d~~g--~~~----~~~~~~~l~~~G~~v~~G~  125 (183)
T d1pqwa_          95 VDVVLNSLA--GEA----IQRGVQILAPGGRFIELGK  125 (183)
T ss_dssp             EEEEEECCC--THH----HHHHHHTEEEEEEEEECSC
T ss_pred             EEEEEeccc--chH----HHHHHHHhcCCCEEEEEcc
Confidence            799998876  222    2456788999999999864

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.80  E-value=0.018  Score=45.32  Aligned_cols=33  Identities=33%  Similarity=0.477  Sum_probs=27.0

Q ss_pred             EEEEEec-CHHHHHHHHHHHhcCC--cEEEEEcCCch
Q 020301          167 TVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQA  200 (328)
Q Consensus       167 tvgIiG~-G~IG~~vA~~l~~~fg--~~V~~~d~~~~  200 (328)
                      +|+|||. |.+|+.+|..+ ...|  -++..+|..+.
T Consensus         2 KV~IiGA~G~VG~~~a~~l-~~~~l~~el~L~D~~~~   37 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLL-AKEPFMKDLVLIGREHS   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HTCTTCCEEEEEECGGG
T ss_pred             EEEEECCCChHHHHHHHHH-HhCCcccccccccchhh
Confidence            6999995 99999999987 4555  48999998753

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.80  E-value=0.029  Score=45.18  Aligned_cols=94  Identities=16%  Similarity=0.044  Sum_probs=59.1

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcccc-ccC-CHHHHh-----h
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RAS-SMDEVL-----R  235 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~ell-----~  235 (328)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.|++..+.  +.       +++-|....... ... ..++..     .
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~a-k~~Ga~~Vi~~d~~~~r~--~~-------a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~   97 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGC-KIAGASRIIAIDINGEKF--PK-------AKALGATDCLNPRELDKPVQDVITELTAG   97 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGH--HH-------HHHTTCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCEEEEECCChHHHHHHHHH-HHhCCceeeeeccchHHH--HH-------HHHhCCCcccCCccchhhhhhhHhhhhcC
Confidence            578999999999999999985 89998 688889876542  12       222233222111 111 223222     3


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCC-cEEEEcC
Q 020301          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCS  272 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~g-a~lIN~a  272 (328)
                      ..|+++-|... +++    .+..++.++++ ..++-++
T Consensus        98 G~d~vie~~G~-~~~----~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2          98 GVDYSLDCAGT-AQT----LKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             CBSEEEESSCC-HHH----HHHHHHTBCTTTCEEEECC
T ss_pred             CCcEEEEeccc-chH----HHHHHHHhhcCCeEEEecC
Confidence            47999988762 332    35667777775 5666664

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.72  E-value=0.014  Score=45.80  Aligned_cols=94  Identities=7%  Similarity=-0.019  Sum_probs=55.0

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH----hhcCCEEEE
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVISL  242 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV~l  242 (328)
                      .+-|+|+|++|+.+++.| ...|.+|++.|..++...+....     ....+..-. .....+.+-+    +.+||.|++
T Consensus         5 HiII~G~g~~g~~l~~~L-~~~~~~v~vId~d~~~~~~~~~~-----~~~~~~~vi-~Gd~~d~~~L~~a~i~~a~~vi~   77 (153)
T d1id1a_           5 HFIVCGHSILAINTILQL-NQRGQNVTVISNLPEDDIKQLEQ-----RLGDNADVI-PGDSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             CEEEECCSHHHHHHHHHH-HHTTCCEEEEECCCHHHHHHHHH-----HHCTTCEEE-ESCTTSHHHHHHHTTTTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHH-HHcCCCEEEEeccchhHHHHHHH-----hhcCCcEEE-EccCcchHHHHHhccccCCEEEE
Confidence            489999999999999997 67899999998876532221111     111121111 1111232222    667999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEE
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILV  269 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lI  269 (328)
                      +.+...  .++.-....+.+.|...+|
T Consensus        78 ~~~~d~--~n~~~~~~~r~~~~~~~ii  102 (153)
T d1id1a_          78 LSDNDA--DNAFVVLSAKDMSSDVKTV  102 (153)
T ss_dssp             CSSCHH--HHHHHHHHHHHHTSSSCEE
T ss_pred             ccccHH--HHHHHHHHHHHhCCCCceE
Confidence            988433  3333344555555554333

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.71  E-value=0.011  Score=44.78  Aligned_cols=100  Identities=12%  Similarity=0.129  Sum_probs=68.5

Q ss_pred             CEEEEEec----CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          166 QTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       166 ~tvgIiG~----G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      |+++|||.    |+.|..+.+.| +.+|.+|+.++|....-                   .+...+.+++++-..-|+++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L-~~~g~~V~pVnP~~~~i-------------------~G~~~y~sl~~lp~~~D~vv   61 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDL-LSKGFEVLPVNPNYDEI-------------------EGLKCYRSVRELPKDVDVIV   61 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSEE-------------------TTEECBSSGGGSCTTCCEEE
T ss_pred             cEEEEEcccCCCCCcHHHHHHHH-HHCCCEEEEEccccccc-------------------cCccccccchhccccceEEE
Confidence            68999994    67899999997 68999999998864320                   12234578999888889999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  292 (328)
                      +++| .+.+..++. +..+ +...+++++.+   ..+ +.+.+.+++..+.
T Consensus        62 i~vp-~~~~~~~l~-~~~~-~g~k~v~~~~g---~~~-~~~~~~a~~~gi~  105 (116)
T d1y81a1          62 FVVP-PKVGLQVAK-EAVE-AGFKKLWFQPG---AES-EEIRRFLEKAGVE  105 (116)
T ss_dssp             ECSC-HHHHHHHHH-HHHH-TTCCEEEECTT---SCC-HHHHHHHHHHTCE
T ss_pred             EEeC-HHHHHHHHH-HHHh-cCCceEEeccc---hhh-HHHHHHHHHcCCE
Confidence            9999 234455554 3333 44557777643   334 4566777665554

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.69  E-value=0.011  Score=47.43  Aligned_cols=97  Identities=16%  Similarity=0.209  Sum_probs=62.0

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhh-----cC
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  237 (328)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.|+++.+.  ++       +++.+....-.....+.++.++     ..
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a-~~~g~~~vv~~~~~~~k~--~~-------~~~~ga~~~i~~~~~~~~~~~~~~~~~g~  101 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLL-KVMTPATVIALDVKEEKL--KL-------AERLGADHVVDARRDPVKQVMELTRGRGV  101 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHCCCEEEEEESSHHHH--HH-------HHHTTCSEEEETTSCHHHHHHHHTTTCCE
T ss_pred             CCCEEEEeCCChHHHHHHHHH-HhhcCcccccccchhHHH--HH-------HhhcccceeecCcccHHHHHHHhhCCCCc
Confidence            478999999999999999985 67775 778888876432  11       2222322221112223444443     37


Q ss_pred             CEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       238 DiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                      |+++.++.. +.+    -+..++.++++..++.++-++
T Consensus       102 d~vid~~g~-~~~----~~~a~~~l~~~G~iv~~G~~~  134 (172)
T d1h2ba2         102 NVAMDFVGS-QAT----VDYTPYLLGRMGRLIIVGYGG  134 (172)
T ss_dssp             EEEEESSCC-HHH----HHHGGGGEEEEEEEEECCCSS
T ss_pred             eEEEEecCc-chH----HHHHHHHHhCCCEEEEEeCcc
Confidence            899888773 222    245677889999999887554

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.61  E-value=0.0093  Score=47.92  Aligned_cols=102  Identities=24%  Similarity=0.216  Sum_probs=57.7

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc--CCEE
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV  240 (328)
                      ++||||+|.+|+..++.+ +...    ..+...+....                  ..........+++|++..  .|+|
T Consensus         9 kv~iIG~G~~g~~h~~~l-~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~e~l~~~~iD~V   69 (172)
T d1lc0a1           9 GVVVVGVGRAGSVRLRDL-KDPRSAAFLNLIGFVSRRE------------------LGSLDEVRQISLEDALRSQEIDVA   69 (172)
T ss_dssp             EEEEECCSHHHHHHHHHH-TSHHHHTTEEEEEEECSSC------------------CCEETTEEBCCHHHHHHCSSEEEE
T ss_pred             EEEEEcCCHHHHHHHHHH-HhCCCCcEEEEEeccchHH------------------HHHhhccCcCCHHHHHhCCCcchh
Confidence            799999999999988876 3322    33333222111                  001111234589999874  5889


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEc-CCCcccCHHHHHHHHHcCCc
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVIDEVALVEHLKQNPM  291 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~-aRG~~vde~aL~~aL~~g~i  291 (328)
                      +++.|  ++++.-+-...++.=|  .+++.- ---.+-+.+.|.++.++...
T Consensus        70 ~I~tp--~~~H~~~~~~al~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~  117 (172)
T d1lc0a1          70 YICSE--SSSHEDYIRQFLQAGK--HVLVEYPMTLSFAAAQELWELAAQKGR  117 (172)
T ss_dssp             EECSC--GGGHHHHHHHHHHTTC--EEEEESCSCSCHHHHHHHHHHHHHTTC
T ss_pred             hhccc--ccccccccccccccch--hhhcCCCccccHHHHHHHHHHHHHcCC
Confidence            99998  4554444455555433  255553 11234455677776555433

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.51  E-value=0.021  Score=45.16  Aligned_cols=102  Identities=17%  Similarity=0.272  Sum_probs=67.1

Q ss_pred             cCCCEEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       163 l~g~tvgIiG~---G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      |.|+||++||=   +++.++++..+ ..||+++....|......+....    .....+   .......++++.++.+|+
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~-~~~g~~~~~~~P~~~~~~~~~~~----~~~~~~---~~~~~~~d~~~av~~aDv   73 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEAL-TFYDVELYLISPELLRMPRHIVE----ELREKG---MKVVETTTLEDVIGKLDV   73 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHG-GGSCEEEEEECCGGGCCCHHHHH----HHHHTT---CCEEEESCTHHHHTTCSE
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHH-HhcCCcEEEEccchhhcchHHHH----HHHhhc---ccceeecCHHHhhccCcE
Confidence            67999999998   68999999996 78999999998864322222111    111111   112234689999999999


Q ss_pred             EEEcCCCChhh-----------hccccHHHHhcCCCCcEEEEcC
Q 020301          240 ISLHPVLDKTT-----------YHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       240 V~l~~plt~~t-----------~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      |....-.....           .--++.+.++.+|+.+++.=..
T Consensus        74 vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~mHpl  117 (157)
T d1ml4a2          74 LYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  117 (157)
T ss_dssp             EEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             EEeeccccccccchhhHHhhcchhccCHHHHhhcCCCeEEecCC
Confidence            97765432210           1124667777788877776554

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=95.51  E-value=0.02  Score=45.86  Aligned_cols=106  Identities=15%  Similarity=0.182  Sum_probs=62.3

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      .+++|.|+|.|-.|++++..| +..|+ +|.+++|+.+.. +.....++       ..     ...+++  ..++|+|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL-~~~g~~~I~I~nR~~~ka-~~L~~~~~-------~~-----~~~~~~--~~~~DliIN   79 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAF-KNSGFEKLKIYARNVKTG-QYLAALYG-------YA-----YINSLE--NQQADILVN   79 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHH-HHTTCCCEEEECSCHHHH-HHHHHHHT-------CE-----EESCCT--TCCCSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHH-HHCCCCEEEEecccHHHH-HHHHHhhh-------hh-----hhhccc--ccchhhhee
Confidence            578999999999999999997 57897 799999987532 22222211       10     111111  357899999


Q ss_pred             cCCCC--h---hhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          243 HPVLD--K---TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       243 ~~plt--~---~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      |.|..  +   +..--++...+   +++++++++.=.+ .++.-|..|-+.|
T Consensus        80 aTpiGm~~~~~~~~l~~~~~~~---~~~~~v~D~vY~P-~~T~ll~~A~~~G  127 (167)
T d1npya1          80 VTSIGMKGGKEEMDLAFPKAFI---DNASVAFDVVAMP-VETPFIRYAQARG  127 (167)
T ss_dssp             CSSTTCTTSTTTTSCSSCHHHH---HHCSEEEECCCSS-SSCHHHHHHHHTT
T ss_pred             ccccCCccccccccccccHhhc---CCcceEEEEeecc-CCCHHHHHHHHCC
Confidence            99853  1   11112344333   3566777774433 2333344343333

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.36  E-value=0.048  Score=44.37  Aligned_cols=107  Identities=14%  Similarity=0.192  Sum_probs=65.1

Q ss_pred             ccCCCEEEEEec--CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          162 LLKGQTVGVIGA--GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       162 ~l~g~tvgIiG~--G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      .|.|.+|++||=  -++..+++..+ ..||+++.+..|..-...++..+.........+   .......++++.++.+|+
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~-~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~eai~~aDv   77 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIG-AKLGMDVRIAAPKALWPHDEFVAQCKKFAEESG---AKLTLTEDPKEAVKGVDF   77 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHH-HHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHT---CEEEEESCHHHHTTTCSE
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHH-HHcCCEEEEEccHHHHhhhHHHHHHHHHhhccC---CeEEEEeChhhccccccE
Confidence            478999999994  48999999986 689999999998431111111110000011111   122334689999999999


Q ss_pred             EEEcCCCCh--hh------------hccccHHHHhcCCCCcEEEEcC
Q 020301          240 ISLHPVLDK--TT------------YHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       240 V~l~~plt~--~t------------~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      |..-.=...  ..            ..+.++.....+|++++|.-+.
T Consensus        78 Vyt~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          78 VHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             EEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             EEeehhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            976442111  10            1223344556789999998664

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.31  E-value=0.0089  Score=45.70  Aligned_cols=89  Identities=11%  Similarity=0.132  Sum_probs=51.3

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHH----hhcCCEEE
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVIS  241 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV~  241 (328)
                      |.+-|+|+|++|+.+++.| ++.+  |.+.+..+.... .        ....+.... .....+.+.|    +.+|+.++
T Consensus         1 kHivI~G~g~~g~~l~~~L-~~~~--i~vi~~d~~~~~-~--------~~~~~~~~i-~Gd~~~~~~L~~a~i~~A~~vi   67 (129)
T d2fy8a1           1 RHVVICGWSESTLECLREL-RGSE--VFVLAEDENVRK-K--------VLRSGANFV-HGDPTRVSDLEKANVRGARAVI   67 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTS-CGGG--EEEEESCTTHHH-H--------HHHTTCEEE-ESCTTSHHHHHHTTCTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-cCCC--CEEEEcchHHHH-H--------HHhcCcccc-ccccCCHHHHHHhhhhcCcEEE
Confidence            4688999999999999997 6665  455565544321 1        111222111 1122333333    67899999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEE
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILV  269 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lI  269 (328)
                      ++.+.  +..+++-....+.+.|...+|
T Consensus        68 ~~~~~--d~~n~~~~~~~r~~~~~~~ii   93 (129)
T d2fy8a1          68 VNLES--DSETIHCILGIRKIDESVRII   93 (129)
T ss_dssp             ECCSS--HHHHHHHHHHHHHHCSSSCEE
T ss_pred             Eeccc--hhhhHHHHHHHHHHCCCceEE
Confidence            98874  334444455566666664333

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.29  E-value=0.013  Score=46.08  Aligned_cols=105  Identities=18%  Similarity=0.267  Sum_probs=61.4

Q ss_pred             CEEEEEe-cCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCC-c-cccccCCHHHHhhcCCEE
Q 020301          166 QTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-V-TWKRASSMDEVLREADVI  240 (328)
Q Consensus       166 ~tvgIiG-~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~l~ell~~aDiV  240 (328)
                      .+|+||| .|.+|+.+|..++ .-|  -++..+|...... +. .+-     .+..... . ......+..+.++.||+|
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~-~~~~~~elvLiDi~~~~~-~a-~Dl-----~~~~~~~~~~~~~~~~~~~~~~~~aDiv   72 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLK-NSPLVSRLTLYDIAHTPG-VA-ADL-----SHIETRATVKGYLGPEQLPDCLKGCDVV   72 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHH-TCTTCSEEEEEESSSHHH-HH-HHH-----TTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred             CeEEEECCCChHHHHHHHHHH-hCCccceEEEEeccccch-hh-HHH-----hhhhhhcCCCeEEcCCChHHHhCCCCEE
Confidence            4799999 5999999999874 444  3799999865321 11 111     1111111 1 112234667889999999


Q ss_pred             EEcCC--CCh-hhhc-cc--c----H---HHHhcCCCCcEEEEcCCCcccCHH
Q 020301          241 SLHPV--LDK-TTYH-LI--N----K---ERLATMKKEAILVNCSRGPVIDEV  280 (328)
Q Consensus       241 ~l~~p--lt~-~t~~-li--~----~---~~~~~mk~ga~lIN~aRG~~vde~  280 (328)
                      +++.-  ..+ +||. ++  |    +   +.+.+..|.++++.++.  .+|.-
T Consensus        73 Vitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN--PvD~~  123 (144)
T d1mlda1          73 VIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN--PVNST  123 (144)
T ss_dssp             EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--CHHHH
T ss_pred             EECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC--chhhh
Confidence            98754  222 2221 11  1    1   23334468999999955  56643

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.18  E-value=0.011  Score=47.29  Aligned_cols=94  Identities=17%  Similarity=0.175  Sum_probs=58.5

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH-HHHhh-----
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLR-----  235 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~-----  235 (328)
                      .|.++.|+|. |.+|...++.+ +.+| .+|++.++++...  ++...+       |..........++ +++.+     
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~-~~~g~~~V~~~~~~~~~~--~~~~~~-------Ga~~~i~~~~~~~~~~~~~~~~~~   96 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIA-KAVSGATIIGVDVREEAV--EAAKRA-------GADYVINASMQDPLAEIRRITESK   96 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHHTCCEEEEEESSHHHH--HHHHHH-------TCSEEEETTTSCHHHHHHHHTTTS
T ss_pred             CCCEEEEEeccccceeeeeecc-cccccccccccccchhhH--HHHHHc-------CCceeeccCCcCHHHHHHHHhhcc
Confidence            4789999995 99999999986 6777 5899999886542  222222       2211111111233 33332     


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      ..|+++-|.. .+++.    +..++.++++..++.++
T Consensus        97 ~~d~vid~~g-~~~~~----~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          97 GVDAVIDLNN-SEKTL----SVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             CEEEEEESCC-CHHHH----TTGGGGEEEEEEEEECC
T ss_pred             cchhhhcccc-cchHH----HhhhhhcccCCEEEEec
Confidence            3788888776 33332    34567788998888885

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.14  E-value=0.069  Score=42.89  Aligned_cols=38  Identities=24%  Similarity=0.246  Sum_probs=33.2

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~  201 (328)
                      -.|.+|.|+|.|.+|...++.+ +.+|+ +|++.|++.++
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~a-k~~G~~~Vi~vd~~~~k   66 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGC-KSAGASRIIGIDLNKDK   66 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHH-HHcCCceEEEecCcHHH
Confidence            3588999999999999999985 79995 89999998764

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.08  E-value=0.031  Score=45.00  Aligned_cols=76  Identities=12%  Similarity=0.184  Sum_probs=45.5

Q ss_pred             CEEEEEecCHHHHHHH--HHHHh--cC-CcEEEEEcCCchhHH--HHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          166 QTVGVIGAGRIGSAYA--RMMVE--GF-KMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA--~~l~~--~f-g~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      .+|.|||.|.+|...+  ..+++  .| +-++..+|..++...  ....+.+.   ...+ .+.......+.+|.++.||
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~d~~eal~~AD   79 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFI---REKA-PDIEFAATTDPEEAFTDVD   79 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHH---HHHC-TTSEEEEESCHHHHHSSCS
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHH---HHhC-CCcceEecCChhhccCCCC
Confidence            4799999999876533  33221  22 247999999875421  12222211   1111 2223334568899999999


Q ss_pred             EEEEcCC
Q 020301          239 VISLHPV  245 (328)
Q Consensus       239 iV~l~~p  245 (328)
                      +|+++.-
T Consensus        80 ~Vvitag   86 (167)
T d1u8xx1          80 FVMAHIR   86 (167)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999974

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.98  E-value=0.015  Score=43.93  Aligned_cols=34  Identities=12%  Similarity=0.385  Sum_probs=30.9

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      .+++.|||.|.||-++|..| +.+|.+|..+++..
T Consensus        22 p~~v~IiGgG~iG~E~A~~l-~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVI-KRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHH-Hhccccceeeehhc
Confidence            37899999999999999997 69999999999864

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.91  E-value=0.018  Score=46.28  Aligned_cols=90  Identities=17%  Similarity=0.201  Sum_probs=59.6

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCH-H--HHhhcCCE
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-D--EVLREADV  239 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~--ell~~aDi  239 (328)
                      .|++|.|.|. |.+|+...+. ++.+|++|++.+++++..  ++       +++-|....-  .+.+. +  +-...+|+
T Consensus        27 ~g~~VlI~ga~G~vG~~aiql-ak~~G~~vi~~~~~~~~~--~~-------~~~lGa~~~i--~~~~~~~~~~~~~g~D~   94 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQV-ARAMGLRVLAAASRPEKL--AL-------PLALGAEEAA--TYAEVPERAKAWGGLDL   94 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHH-HHHTTCEEEEEESSGGGS--HH-------HHHTTCSEEE--EGGGHHHHHHHTTSEEE
T ss_pred             CCCEEEEEeccccchhhhhhh-hccccccccccccccccc--cc-------ccccccceee--ehhhhhhhhhccccccc
Confidence            5789999995 9999999998 489999999998876432  11       1222322111  11121 1  22356899


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~a  272 (328)
                      |+-+..  + +   + ...++.++++..++.++
T Consensus        95 v~d~~G--~-~---~-~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          95 VLEVRG--K-E---V-EESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             EEECSC--T-T---H-HHHHTTEEEEEEEEEC-
T ss_pred             cccccc--h-h---H-HHHHHHHhcCCcEEEEe
Confidence            988765  2 1   2 56789999999999985

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.89  E-value=0.052  Score=42.20  Aligned_cols=100  Identities=10%  Similarity=0.104  Sum_probs=68.3

Q ss_pred             CCCEEEEEec----CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCE
Q 020301          164 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (328)
Q Consensus       164 ~g~tvgIiG~----G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (328)
                      .-|+++|||.    |+.|..+++.| +.+|.+|+..+|....                   -.+...+.+++++-..-|+
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L-~~~g~~v~pVnP~~~~-------------------i~G~~~~~sl~dlp~~iD~   77 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYL-LEHGYDVYPVNPKYEE-------------------VLGRKCYPSVLDIPDKIEV   77 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSE-------------------ETTEECBSSGGGCSSCCSE
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHH-HHCCCEEEEECCcccc-------------------cCCCcccccccccCccceE
Confidence            4679999996    57999999997 6899999999986432                   0122345789999889999


Q ss_pred             EEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020301          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (328)
Q Consensus       240 V~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  289 (328)
                      +++++|. +.+..++ ++..+ +...+++++.+   ..+++....+-+.|
T Consensus        78 v~i~vp~-~~~~~~~-~e~~~-~g~k~v~~~~G---~~~ee~~~~a~~~g  121 (139)
T d2d59a1          78 VDLFVKP-KLTMEYV-EQAIK-KGAKVVWFQYN---TYNREASKKADEAG  121 (139)
T ss_dssp             EEECSCH-HHHHHHH-HHHHH-HTCSEEEECTT---CCCHHHHHHHHHTT
T ss_pred             EEEEeCH-HHHHHHH-HHHHH-hCCCEEEEecc---ccCHHHHHHHHHCC
Confidence            9999992 2334444 33333 45567777765   35665554444443

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.84  E-value=0.026  Score=46.35  Aligned_cols=37  Identities=38%  Similarity=0.334  Sum_probs=31.3

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~  201 (328)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.|+++..
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~a-k~~ga~~Vi~~d~~~~r   62 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASA-RLLGAAVVIVGDLNPAR   62 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHH-Hhhcccceeeecccchh
Confidence            478999999999999988884 77887 89999988653

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.81  E-value=0.016  Score=44.01  Aligned_cols=34  Identities=15%  Similarity=0.310  Sum_probs=30.6

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      +++.|||.|.||-++|..| ..+|++|..+++.+.
T Consensus        24 ~~~vIiG~G~ig~E~A~~l-~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVY-SRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             CeEEEECCCchHHHHHHHH-HhhCcceeEEEeccc
Confidence            6899999999999999997 699999999987653

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.77  E-value=0.037  Score=41.13  Aligned_cols=62  Identities=11%  Similarity=0.138  Sum_probs=45.0

Q ss_pred             CCEEEEEec----------CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh
Q 020301          165 GQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (328)
Q Consensus       165 g~tvgIiG~----------G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  234 (328)
                      .|+|||+|+          .+-.-.+.+.| +..|++|.+|||+.....                .........++++++
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L-~~~g~~v~iyDP~v~~~~----------------~~~~~~~~~~l~~~~   77 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDIL-KSKDIKIIIYEPMLNKLE----------------SEDQSVLVNDLENFK   77 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHH-HTSSCEEEEECTTCSCCC----------------TTCCSEECCCHHHHH
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHH-hccccceeeecCCcChhH----------------hccCCEEEeCHHHHH
Confidence            468999998          45667789987 688999999999875310                011122346899999


Q ss_pred             hcCCEEEEc
Q 020301          235 READVISLH  243 (328)
Q Consensus       235 ~~aDiV~l~  243 (328)
                      ..||+|++.
T Consensus        78 ~~sDiII~~   86 (108)
T d1dlja3          78 KQANIIVTN   86 (108)
T ss_dssp             HHCSEEECS
T ss_pred             hhCCEEEEc
Confidence            999987654

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.11  Score=40.58  Aligned_cols=110  Identities=22%  Similarity=0.292  Sum_probs=59.1

Q ss_pred             CEEEEEec-CHHHHHHHHHHHh--c-CCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          166 QTVGVIGA-GRIGSAYARMMVE--G-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~--~-fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      |+|||||. |.+|+++.++|..  . .-.++..+..+......-   .+      .. .........+ .+.++.+|+++
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~---~~------~~-~~~~~~~~~~-~~~~~~~DivF   70 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAP---SF------GG-TTGTLQDAFD-LEALKALDIIV   70 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCC---GG------GT-CCCBCEETTC-HHHHHTCSEEE
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccc---cc------cC-Cceeeecccc-hhhhhcCcEEE
Confidence            58999998 9999999986543  2 234666665443221000   00      00 0011111122 23578999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc-----------cCHHHHHHHHHcC
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-----------IDEVALVEHLKQN  289 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-----------vde~aL~~aL~~g  289 (328)
                      +++|... ... + ...+..-+.+.++|+.|.--=           |+.+.|..++++|
T Consensus        71 ~a~~~~~-s~~-~-~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g  126 (146)
T d1t4ba1          71 TCQGGDY-TNE-I-YPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNG  126 (146)
T ss_dssp             ECSCHHH-HHH-H-HHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTT
T ss_pred             EecCchH-HHH-h-hHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcC
Confidence            9999322 222 2 222222333456777763221           4566888888875

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=94.74  E-value=0.028  Score=44.00  Aligned_cols=104  Identities=14%  Similarity=0.225  Sum_probs=57.1

Q ss_pred             CEEEEEe-cCHHHHHHHHHHH-hcCCcEEEEEcCCchh-HHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          166 QTVGVIG-AGRIGSAYARMMV-EGFKMNLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       166 ~tvgIiG-~G~IG~~vA~~l~-~~fg~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      ++|+||| .|.+|+.+|-.++ +++.-++..||..... ..+.....+.....-..  ... .+..+.++ ++.||+|++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~--~~~-i~~~~~~~-~~~aDiVvi   76 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDS--NTR-VRQGGYED-TAGSDVVVI   76 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTC--CCE-EEECCGGG-GTTCSEEEE
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccC--Cce-EeeCCHHH-hhhcCEEEE
Confidence            4799999 5999999998764 2444589999964322 12211111111000001  111 12234444 689999998


Q ss_pred             cCC--CChh-hh--------cccc--HHHHhcCCCCcEEEEcCC
Q 020301          243 HPV--LDKT-TY--------HLIN--KERLATMKKEAILVNCSR  273 (328)
Q Consensus       243 ~~p--lt~~-t~--------~li~--~~~~~~mk~ga~lIN~aR  273 (328)
                      +.-  ..+. ||        .++.  .+.+....|+++++.++.
T Consensus        77 taG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN  120 (142)
T d1o6za1          77 TAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (142)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             ecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence            754  2221 21        1111  224555678899999855

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.022  Score=48.64  Aligned_cols=40  Identities=28%  Similarity=0.451  Sum_probs=35.4

Q ss_pred             cccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .+|.||++-|-|.+. ||+++|+.|+ ..|++|+.+|++.++
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la-~~G~~V~l~~r~~~~   43 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFA-KLKSKLVLWDINKHG   43 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            469999999999987 9999999985 789999999998653

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.71  E-value=0.053  Score=46.38  Aligned_cols=38  Identities=26%  Similarity=0.300  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      +|+||++-|.| -+.||+++|+.| ..-|++|+..+++..
T Consensus         3 ~L~gK~alITGas~GIG~aia~~l-a~~G~~V~i~~r~~~   41 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEEL-AGLGARVYTCSRNEK   41 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHH
Confidence            68999999999 556999999998 478999999999864

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.61  E-value=0.019  Score=43.03  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=30.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      +++.|||.|.||-++|..+ ..+|.+|..+.+...
T Consensus        23 ~~v~IiGgG~ig~E~A~~l-~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAY-ANFGTKVTILEGAGE   56 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSSS
T ss_pred             CeEEEECCCccceeeeeee-cccccEEEEEEecce
Confidence            7899999999999999997 689999999987653

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.50  E-value=0.31  Score=40.65  Aligned_cols=156  Identities=13%  Similarity=0.144  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHhcHHHHHHHHHcCCCCCCCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc---
Q 020301          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ---  199 (328)
Q Consensus       123 vAE~al~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~---  199 (328)
                      +|--+++-+|+..|-.                     +..|...++.|.|.|.-|-.+|+.+....--+++.+|+.-   
T Consensus         5 TaaV~LAgll~a~~~~---------------------g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~   63 (222)
T d1vl6a1           5 TAVVVSAAFLNALKLT---------------------EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILN   63 (222)
T ss_dssp             HHHHHHHHHHHHHHHH---------------------TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECC
T ss_pred             HHHHHHHHHHHHHHHh---------------------CCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEE
Confidence            4555667777666532                     3578999999999999999999987544334799999861   


Q ss_pred             --h--hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc
Q 020301          200 --A--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (328)
Q Consensus       200 --~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~  275 (328)
                        .  ....++...|.   +....    .....++.+++..+|++...-     +.+++.++...+|.++.++.=.|.-.
T Consensus        64 ~~r~~~~~~~~~~~~~---~~~~~----~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt  131 (222)
T d1vl6a1          64 ENDPETCLNEYHLEIA---RITNP----ERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPV  131 (222)
T ss_dssp             TTSGGGCSSHHHHHHH---HTSCT----TCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSS
T ss_pred             cCcccccccHHHHHHH---hhhcc----hhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCCc
Confidence              0  11111111111   11110    112357899999999876552     58889999999999999999988866


Q ss_pred             ccCHHHHHHHHHcCCccEEEEeCCCCCCCCCCCcccCCCeEEcCCC
Q 020301          276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHI  321 (328)
Q Consensus       276 ~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHi  321 (328)
                      ---|..  .+-..|+..-|.     .-|.  . --+..|+++-|=+
T Consensus       132 ~~~e~~--~a~~~G~ai~At-----Gsp~--~-p~Q~NN~yiFPGi  167 (222)
T d1vl6a1         132 PEIDPE--LAREAGAFIVAT-----GRSD--H-PNQVNNLLAFPGI  167 (222)
T ss_dssp             CSSCHH--HHHHTTCSEEEE-----SCTT--S-SSBCCGGGTHHHH
T ss_pred             cchhhh--hheeccceEEec-----CCCC--C-CccCcceeecchH
Confidence            533333  345567654443     1221  1 1345677766643

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.45  E-value=0.061  Score=45.48  Aligned_cols=38  Identities=18%  Similarity=0.213  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~G-~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      +|.||++-|.|.+ -||+++|+.|+ ..|++|+..+++.+
T Consensus         2 dl~GK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~   40 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALH-ASGAKVVAVTRTNS   40 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            4889999999975 59999999984 78999999998764

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.027  Score=47.65  Aligned_cols=40  Identities=25%  Similarity=0.346  Sum_probs=34.7

Q ss_pred             cccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      +.|+||++-|.|.+. ||+++|++|+ .-|++|+..+++.+.
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la-~~G~~V~~~~r~~~~   41 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLV-GQGASAVLLDLPNSG   41 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECTTSS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCChHH
Confidence            368999999999876 9999999985 789999999987643

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.27  E-value=0.11  Score=41.36  Aligned_cols=38  Identities=18%  Similarity=0.172  Sum_probs=32.6

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~  201 (328)
                      -.|.+|.|+|.|.+|...++.+ +.+|+ +|++.|++..+
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~a-k~~G~~~Vi~~d~~~~k   64 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGC-KAAGASRIIGVGTHKDK   64 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHH-HHcCCceeeccCChHHH
Confidence            4588999999999999999985 78886 79999987654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.22  E-value=0.027  Score=42.21  Aligned_cols=34  Identities=26%  Similarity=0.617  Sum_probs=30.7

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      +++.|||.|.+|-++|..+ +.+|.+|..+++...
T Consensus        22 ~~vvIiGgG~ig~E~A~~l-~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVI-NGLGAKTHLFEMFDA   55 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             CEEEEECCChhhHHHHHHh-hccccEEEEEeecch
Confidence            6799999999999999997 689999999998753

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.0077  Score=48.47  Aligned_cols=72  Identities=22%  Similarity=0.197  Sum_probs=43.3

Q ss_pred             EEEEEec-CHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          167 TVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       167 tvgIiG~-G~IG~~vA~~l~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      +|+|+|+ |+||+++++.+.+.-++++. ++++...+.....   .+   +-.+..........++++++..+|+|+-.-
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d---~~---~~~~~~~~~~~~~~~~~~~~~~~DViIDFs   79 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSD---AG---ELAGAGKTGVTVQSSLDAVKDDFDVFIDFT   79 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCC---TT---CSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccch---hh---hhhccccCCceeeccHHHHhcccceEEEec
Confidence            6999995 99999999987555688875 4455432211000   00   001111222233467888999999997653

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.20  E-value=0.031  Score=41.81  Aligned_cols=37  Identities=16%  Similarity=0.220  Sum_probs=32.6

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ..++++.|||.|.||-++|..| ..+|.+|..+.+.+.
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l-~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFF-NATGRRTVMLVRTEP   56 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCT
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HhcchhheEeeccch
Confidence            3579999999999999999997 689999999987643

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.19  E-value=0.026  Score=42.81  Aligned_cols=33  Identities=15%  Similarity=0.153  Sum_probs=30.5

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      |++.|||.|.||-++|..+ +.+|.+|..+.+..
T Consensus        23 k~vvIvGgG~iG~E~A~~l-~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGIL-SALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHH-hcCCcEEEEEeecc
Confidence            7899999999999999997 69999999999864

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.029  Score=47.90  Aligned_cols=40  Identities=25%  Similarity=0.365  Sum_probs=34.7

Q ss_pred             ccccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       160 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      |..|.||++-|-|. +-||+++|++|+ .-|++|+..|++.+
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~   41 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFV-NSGARVVICDKDES   41 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESCHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            45789999999997 679999999985 78999999998754

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.09  E-value=0.075  Score=38.02  Aligned_cols=66  Identities=18%  Similarity=0.187  Sum_probs=43.5

Q ss_pred             CEEEEEecCHHHH-HHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          166 QTVGVIGAGRIGS-AYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       166 ~tvgIiG~G~IG~-~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      .++=+||.|-+|. .+|+.| +..|+.|.++|+...+..+.        ++..|..-..   -.+ .+-+..+|+|+..-
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L-~~~G~~VsGSD~~~~~~t~~--------L~~~Gi~i~~---gh~-~~~i~~~d~vV~Ss   68 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHE-FSNGNDVYGSNIEETERTAY--------LRKLGIPIFV---PHS-ADNWYDPDLVIKTP   68 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEECSSCCHHHHH--------HHHTTCCEES---SCC-TTSCCCCSEEEECT
T ss_pred             cEEEEEeECHHHHHHHHHHH-HhCCCeEEEEeCCCChhHHH--------HHHCCCeEEe---eec-ccccCCCCEEEEec
Confidence            5688999999998 678886 78999999999987554433        2333432110   011 23346789887653

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.06  E-value=0.029  Score=42.27  Aligned_cols=34  Identities=24%  Similarity=0.381  Sum_probs=30.3

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      .+++.|||.|.||-++|..+ +.+|++|....+..
T Consensus        22 p~~i~IiG~G~ig~E~A~~l-~~~G~~Vtiv~~~~   55 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVW-ARLGAEVTVLEAMD   55 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHH-HHcCCceEEEEeec
Confidence            37899999999999999997 68999999987664

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.97  E-value=0.02  Score=43.50  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=29.0

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCC
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~  198 (328)
                      +++.|||.|.||-++|..+ +.+|.+|..+.+.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l-~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFL-AGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHH-HHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHH-hhcCCeEEEEEec
Confidence            5799999999999999997 6999999988765

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.047  Score=46.81  Aligned_cols=41  Identities=24%  Similarity=0.354  Sum_probs=35.5

Q ss_pred             ccccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      ...|.||++-|.|.++ ||+++|+.|+ ..|++|+..+|+.+.
T Consensus         9 ~~~L~GK~alITGassGIG~aiA~~la-~~G~~Vil~~r~~~~   50 (269)
T d1xu9a_           9 PEMLQGKKVIVTGASKGIGREMAYHLA-KMGAHVVVTARSKET   50 (269)
T ss_dssp             GGGGTTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             ccccCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            3459999999999877 9999999985 789999999998643

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.92  E-value=0.057  Score=41.36  Aligned_cols=108  Identities=17%  Similarity=0.155  Sum_probs=69.2

Q ss_pred             cCCCEEEEEec----CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          163 LKGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       163 l~g~tvgIiG~----G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      ++-++|+|||.    |..|..+.+.|.+++.-+|+..+|....                   -.+...+.+++|+=..-|
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~-------------------i~G~~~y~sl~dlp~~vD   66 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE-------------------VQGVKAYKSVKDIPDEID   66 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE-------------------ETTEECBSSTTSCSSCCS
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc-------------------cCCeEeecchhhcCCCCc
Confidence            56689999997    8999999999743344699999987532                   112334678899888899


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcc-----cCHHHHHHHHHcCCc
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-----IDEVALVEHLKQNPM  291 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~-----vde~aL~~aL~~g~i  291 (328)
                      .+++++| .+.+..++ ++..+.=-++++++--+-++.     -.++.|.+..++..+
T Consensus        67 lvvi~vp-~~~~~~~~-~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gi  122 (129)
T d2csua1          67 LAIIVVP-KRFVKDTL-IQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGM  122 (129)
T ss_dssp             EEEECSC-HHHHHHHH-HHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTC
T ss_pred             eEEEecC-hHHhHHHH-HHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCC
Confidence            9999999 34555655 444333333455544333332     233455555555433

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=93.88  E-value=0.036  Score=47.44  Aligned_cols=39  Identities=28%  Similarity=0.413  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      +|.||++-|.|.+. ||+++|+.|+ .-|++|+..|++.+.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   41 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAV-AAGARVVLADVLDEE   41 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            68999999999875 9999999985 779999999998643

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.87  E-value=0.019  Score=43.63  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=31.2

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .+++.|||.|.||-++|..+ ..+|++|....+...
T Consensus        25 p~~~viiG~G~iglE~A~~~-~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVW-GRIGSEVTVVEFASE   59 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHH-HHHTCEEEEECSSSS
T ss_pred             CCeEEEEccchHHHHHHHHH-HhcCCeEEEEEEccc
Confidence            37899999999999999997 699999999987653

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=93.86  E-value=0.094  Score=41.38  Aligned_cols=105  Identities=18%  Similarity=0.319  Sum_probs=66.0

Q ss_pred             cCCCEEEEEec---CHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          163 LKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       163 l~g~tvgIiG~---G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      +.|.+|++||=   |++..+++..+ ..|| +.+++..|......+...    .+++..+.   ......++++.++++|
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l-~~~~~~~~~~~~P~~~~~~~~~~----~~~~~~~~---~~~~~~d~~~a~~~aD   73 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYIL----DMLDEKGI---AWSLHSSIEEVMAEVD   73 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHH-TTSSSCEEEEECCGGGCCCHHHH----HHHHHTTC---CEEECSCSTTTGGGCS
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHH-HHcCCCeEEeeccchhhhhHHHH----HHHhhhcc---ccccccCHHHHhCcCc
Confidence            67999999995   77999999986 6886 556666654322111111    11222221   2223468899999999


Q ss_pred             EEEEcCCCChh----------hhccccHHHHhcCCCCcEEEEcC-CCc
Q 020301          239 VISLHPVLDKT----------TYHLINKERLATMKKEAILVNCS-RGP  275 (328)
Q Consensus       239 iV~l~~plt~~----------t~~li~~~~~~~mk~ga~lIN~a-RG~  275 (328)
                      +|...--....          ....++++.++.++++++|.-+. ||.
T Consensus        74 vvy~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcLPRg~  121 (160)
T d1ekxa2          74 ILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVD  121 (160)
T ss_dssp             EEEECCCCGGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCSCCSS
T ss_pred             eEEeecccccccchHHHHHHHHHhhccHHHHHhcCcceeeecCCCcCC
Confidence            99765332221          12334678888899998887763 443

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=93.86  E-value=0.051  Score=43.29  Aligned_cols=37  Identities=14%  Similarity=0.041  Sum_probs=30.8

Q ss_pred             CCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       164 ~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .|.+|.|.| .|.+|..+++. ++.+|++|++.+++.++
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iql-ak~~Ga~Vi~~~~s~~k   65 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQW-AKALGAKLIGTVGTAQK   65 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHH-HHHHTCEEEEEESSHHH
T ss_pred             CCCEEEEEccccccchHHHHH-HHHhCCeEeecccchHH
Confidence            478999995 55599999998 48999999999988754

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=93.85  E-value=0.067  Score=42.92  Aligned_cols=94  Identities=19%  Similarity=0.145  Sum_probs=62.9

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCC-HHHHh-----hc
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVL-----RE  236 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell-----~~  236 (328)
                      .|.+|.|.|. |.+|+..++. ++..|++|++.+++.+..  ++       ++..|....-.....+ .++++     ..
T Consensus        29 ~G~~VlV~ga~ggvG~~aiql-ak~~Ga~vi~~~~~~~~~--~~-------~~~~Ga~~vi~~~~~~~~~~~~~~~~~~G   98 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQI-AKLKGCKVVGAAGSDEKI--AY-------LKQIGFDAAFNYKTVNSLEEALKKASPDG   98 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHH-HHHTTCEEEEEESSHHHH--HH-------HHHTTCSEEEETTSCSCHHHHHHHHCTTC
T ss_pred             CCCEEEEEeCCCchhHHHHHH-HHccCCEEEEeCCCHHHH--HH-------HHhhhhhhhcccccccHHHHHHHHhhcCC
Confidence            5889999998 6699999987 589999999998875432  22       2233333221111122 33333     34


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .|+|+-++.  .++    -.+.++.++++..++.++.
T Consensus        99 vd~v~D~vG--~~~----~~~~~~~l~~~G~~v~~G~  129 (182)
T d1v3va2          99 YDCYFDNVG--GEF----LNTVLSQMKDFGKIAICGA  129 (182)
T ss_dssp             EEEEEESSC--HHH----HHHHGGGEEEEEEEEECCC
T ss_pred             CceeEEecC--chh----hhhhhhhccCCCeEEeecc
Confidence            899999886  332    2577899999999999975

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.67  E-value=0.06  Score=39.07  Aligned_cols=39  Identities=18%  Similarity=0.205  Sum_probs=32.2

Q ss_pred             CCCEEEEEecCHHHHH-HHHHHHhcCCcEEEEEcCCchhHH
Q 020301          164 KGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRL  203 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~-vA~~l~~~fg~~V~~~d~~~~~~~  203 (328)
                      +.+++=+||.|-+|.+ +|+.| +..|.+|.++|....+..
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L-~~~G~~VsGSD~~~~~~~   46 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEIL-LNEGYQISGSDIADGVVT   46 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHH-HHHTCEEEEEESCCSHHH
T ss_pred             hCCEEEEEEECHHHHHHHHHHH-HhCCCEEEEEeCCCChhh
Confidence            4688999999999954 59986 689999999998765443

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.072  Score=45.05  Aligned_cols=39  Identities=28%  Similarity=0.379  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .|.||++-|.|.+. ||+++|++|+ .-|++|+..||+...
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la-~~G~~V~~~~r~~~~   43 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALH-ATGARVVAVSRTQAD   43 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHH
Confidence            58999999999765 9999999985 789999999998643

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=93.61  E-value=0.13  Score=44.16  Aligned_cols=40  Identities=10%  Similarity=0.213  Sum_probs=35.3

Q ss_pred             cccCCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       161 ~~l~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .+|.||++-|.| -|-||+++|+.|+ .-|++|++.|++...
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la-~~Ga~Vii~~r~~~~   61 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLS-SLGAQCVIASRKMDV   61 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHH
Confidence            589999999999 5789999999985 789999999998653

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.51  E-value=0.052  Score=46.06  Aligned_cols=39  Identities=18%  Similarity=0.109  Sum_probs=33.4

Q ss_pred             cccCCCEEEEEecC---HHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       161 ~~l~g~tvgIiG~G---~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .+|.||++-|.|.+   -||+++|++|+ .-|++|+..+++..
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la-~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLK-EAGAEVALSYQAER   45 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHH-HCCCEEEEEeCcHH
Confidence            47999999999975   49999999985 67999999888753

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.48  E-value=0.063  Score=44.19  Aligned_cols=68  Identities=19%  Similarity=0.307  Sum_probs=53.9

Q ss_pred             cCCHHHHhhcCCEEE-EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCC
Q 020301          227 ASSMDEVLREADVIS-LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (328)
Q Consensus       227 ~~~l~ell~~aDiV~-l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~  300 (328)
                      ..+-++++.+||+|+ +..|+..+    .+.+.++.||+|+++|..-  ......++.++|.+.++...++|...
T Consensus        58 ~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~li~~l--~p~~~~~~~~~l~~~~it~~a~e~ip  126 (194)
T d1l7da2          58 ASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVLMCHL--GALTNRPVVEALTKRKITAYAMELMP  126 (194)
T ss_dssp             ESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEEEEEC--CGGGCHHHHHHHHHTTCEEEEGGGCC
T ss_pred             chhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEEEEec--ccccchhHHHHHHhcCceEEeeeccc
Confidence            457789999999885 56665443    3456789999999999874  35667889999999999999999774

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.45  E-value=0.032  Score=42.50  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=30.7

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      .+++.|||.|.||-++|..+ ..+|.+|....+..
T Consensus        26 p~~vvIiGgG~IG~E~A~~~-~~~G~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVY-STLGSRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHH-HHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHh-hcCCCEEEEEEeec
Confidence            37899999999999999997 69999999998764

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.42  E-value=0.026  Score=45.19  Aligned_cols=36  Identities=11%  Similarity=0.295  Sum_probs=31.0

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCch
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA  200 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~-V~~~d~~~~  200 (328)
                      .+|+|.|||.|.+|...|..| ...|++ |.++++...
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l-~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFL-ARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHH-HHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHH-HHCCCCeEEEEEecCc
Confidence            578999999999999999997 578985 988987643

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.39  E-value=0.21  Score=39.48  Aligned_cols=37  Identities=22%  Similarity=0.311  Sum_probs=32.0

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchh
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQAT  201 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg-~~V~~~d~~~~~  201 (328)
                      .|.||.|+|.|-+|...+..+ +.+| .+|++.|++..+
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~-~~~g~~~Vi~~~~~~~k   65 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGC-KAAGAARIIGVDINKDK   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCCcHHHHHHHH-HHcCCceEEeecCcHHH
Confidence            588999999999999999986 6777 589999988754

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=93.37  E-value=0.063  Score=45.72  Aligned_cols=36  Identities=22%  Similarity=0.273  Sum_probs=31.9

Q ss_pred             cCCCEEEEEec-C--HHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          163 LKGQTVGVIGA-G--RIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       163 l~g~tvgIiG~-G--~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      |+||++.|.|. |  -||+++|+.|+ .-|++|+..+++.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la-~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCF-NQGATLAFTYLNE   41 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHH-TTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHH-HCCCEEEEEeCCH
Confidence            88999999996 4  49999999984 8899999999874

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.36  E-value=0.049  Score=41.13  Aligned_cols=36  Identities=25%  Similarity=0.278  Sum_probs=31.8

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      -.++++.|||.|.+|-++|..+ ...|.+|...++..
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l-~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAF-AKAGKKVTVIDILD   63 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSS
T ss_pred             cCCCEEEEECChHHHHHHHHHh-hccceEEEEEEecC
Confidence            3578999999999999999997 58999999998764

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.32  E-value=0.044  Score=45.62  Aligned_cols=34  Identities=29%  Similarity=0.361  Sum_probs=30.7

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      ||+|.|||.|.-|...|..| +..|.+|.+++...
T Consensus         1 ~KkV~IIGaG~aGL~aA~~L-a~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKL-KIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHH-HhCCCCEEEEeCCC
Confidence            79999999999999999997 57899999999753

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=93.30  E-value=0.064  Score=45.41  Aligned_cols=38  Identities=24%  Similarity=0.229  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~G-~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      +|.||++-|-|.+ -||+++|++|+ .-|++|+..+++.+
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~-~~G~~Vv~~~r~~~   39 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLA-ARGAKVIGTATSEN   39 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence            4789999999865 59999999985 78999999998764

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.30  E-value=0.1  Score=44.21  Aligned_cols=39  Identities=18%  Similarity=0.205  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      +|.||++-|.|.+. ||+++|+.|+ .-|++|+..+++.++
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   41 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLA-EAGCSVVVASRNLEE   41 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            68999999999865 9999999985 789999999998654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=93.28  E-value=0.051  Score=41.00  Aligned_cols=35  Identities=14%  Similarity=0.190  Sum_probs=31.5

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ++++.|||.|.+|-++|..| +..|.+|..+++.+.
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l-~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATA-RTAGVHVSLVETQPR   64 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSSS
T ss_pred             CCeEEEECcchhHHHHHHHh-hcccceEEEEeeccc
Confidence            57999999999999999997 588999999988754

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=93.26  E-value=0.05  Score=42.86  Aligned_cols=90  Identities=23%  Similarity=0.324  Sum_probs=59.1

Q ss_pred             CCCEEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEE
Q 020301          164 KGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (328)
Q Consensus       164 ~g~tvgIiG~---G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (328)
                      .|.+|++||=   +++..+++..+ ..||+++....|..-...                 ........++++.++.+|+|
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~-~~~g~~~~i~~P~~~~~~-----------------~~~~~~~~~~~ea~~~aDvi   63 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVL-TRLGARVLFSGPSEWQDE-----------------ENTFGTYVSMDEAVESSDVV   63 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH-HHcCCcccccCCchhhcc-----------------ccceeEEEechhccccCcee
Confidence            5889999996   68999999997 689999998877532110                 01122346899999999999


Q ss_pred             EEcCCCChhh-----------hccccHHHHhcCCCCcEEEEc
Q 020301          241 SLHPVLDKTT-----------YHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       241 ~l~~plt~~t-----------~~li~~~~~~~mk~ga~lIN~  271 (328)
                      ...-......           ..-++.+.+..++++++|.-+
T Consensus        64 y~~r~q~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~  105 (151)
T d2at2a2          64 MLLRIQNERHQSAVSQEGYLNKYGLTVERAERMKRHAIIMHP  105 (151)
T ss_pred             eeeEEEEcccccchhhHHhhhhhcchhhhhhhcccCeEEecC
Confidence            6543221110           012345556666777777665

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.25  E-value=0.035  Score=43.84  Aligned_cols=92  Identities=20%  Similarity=0.274  Sum_probs=52.9

Q ss_pred             CCEEEEEec-CHHHHHHHHHHHh-cC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          165 GQTVGVIGA-GRIGSAYARMMVE-GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       165 g~tvgIiG~-G~IG~~vA~~l~~-~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      |-+|||||. |-+|+++.+.|.+ .| -.++.+...+.... +        ....   ...........++.+..+|+++
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G-~--------~~~~---~~~~~~~~~~~~~~~~~~d~~f   68 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAG-K--------SLKF---KDQDITIEETTETAFEGVDIAL   68 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTT-C--------EEEE---TTEEEEEEECCTTTTTTCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccc-c--------cccc---cCCcccccccchhhhhhhhhhh
Confidence            458999998 9999999999753 22 34555554322110 0        0000   0001111223456678899999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      +++|  ++...   +...+..++|..+|+.|-
T Consensus        69 ~~~~--~~~s~---~~~~~~~~~~~~VIDlSs   95 (154)
T d2gz1a1          69 FSAG--SSTSA---KYAPYAVKAGVVVVDNTS   95 (154)
T ss_dssp             ECSC--HHHHH---HHHHHHHHTTCEEEECSS
T ss_pred             hccC--ccchh---hHHhhhccccceehhcCh
Confidence            9999  22222   222334467999999874

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.25  E-value=0.093  Score=44.64  Aligned_cols=40  Identities=25%  Similarity=0.255  Sum_probs=35.0

Q ss_pred             cccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .++.||++-|.|.+. ||+++|++|+ .-|++|+..+++..+
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVA-AAGANVAVIYRSAAD   45 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHH-HTTEEEEEEESSCTT
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            368999999999876 9999999985 789999999998654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=93.19  E-value=0.042  Score=46.51  Aligned_cols=39  Identities=28%  Similarity=0.296  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .|.||++-|.|.+. ||+++|+.|+ .-|++|+..+|+.+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~-~~G~~V~~~~r~~~~   41 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFA-REGASLVAVDREERL   41 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            37899999999877 9999999984 789999999988653

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.95  E-value=0.084  Score=45.17  Aligned_cols=44  Identities=20%  Similarity=0.144  Sum_probs=36.5

Q ss_pred             ccccCCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH
Q 020301          160 GNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLE  204 (328)
Q Consensus       160 ~~~l~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~  204 (328)
                      +..|.||++-|.| -+-||+++|+.|+ .-|++|++.+++..+..+
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la-~~Ga~Vvi~~~~~~~~~~   57 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELG-RRGCKVIVNYANSTESAE   57 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHH
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCchHHHH
Confidence            4569999999999 6789999999985 789999998887654433

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.94  E-value=0.051  Score=40.88  Aligned_cols=35  Identities=17%  Similarity=0.117  Sum_probs=30.9

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ++++.|||.|.+|-++|..| ..+|.+|..+++.+.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l-~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNL-AEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHH-HHTTCEEEEECSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHh-hcccceEEEEecccc
Confidence            46899999999999999997 689999999987653

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=92.92  E-value=0.047  Score=42.58  Aligned_cols=36  Identities=19%  Similarity=0.295  Sum_probs=29.8

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCc
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQ  199 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~-~fg~~V~~~d~~~  199 (328)
                      .||+|.|||.|.+|-++|..|++ ....+|+.+++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            48999999999999999999743 2347899998765

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.84  E-value=0.058  Score=49.80  Aligned_cols=99  Identities=20%  Similarity=0.205  Sum_probs=59.4

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HHH-H-----------HhhhhhhhhcC--C--CCCcc
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK-F-----------VTAYGQFLKAN--G--EQPVT  223 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~--~~~-~-----------~~~~~~~~~~~--~--~~~~~  223 (328)
                      |++++|.|||+|.+|.++|+.|+ ..|. ++..+|...-..  +.+ +           .+.-.+.+..-  .  .....
T Consensus        35 l~~~kVlvvG~GglG~ei~k~L~-~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~  113 (426)
T d1yovb1          35 LDTCKVLVIGAGGLGCELLKNLA-LSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF  113 (426)
T ss_dssp             HHHCCEEEECSSTTHHHHHHHHH-TTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred             HhcCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence            78899999999999999999985 5666 688888643110  000 0           00000000000  0  00000


Q ss_pred             ccccCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCC
Q 020301          224 WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (328)
Q Consensus       224 ~~~~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk  263 (328)
                      ..-....+++++++|+|+.++- +.+++..+|+..+...|
T Consensus       114 ~~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~k  152 (426)
T d1yovb1         114 NKIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLLN  152 (426)
T ss_dssp             SCGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTCC
T ss_pred             ccccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhhc
Confidence            0001123578999999998876 67889999988876554

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.79  E-value=0.074  Score=45.08  Aligned_cols=39  Identities=23%  Similarity=0.383  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       162 ~l~g~tvgIiG~G-~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .|.||++-|-|.+ -||+++|+.|+ .-|++|+..|++.+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la-~~G~~V~~~~r~~~~   42 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMV-AEGAKVVFGDILDEE   42 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            4899999999985 49999999985 789999999997643

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=92.78  E-value=0.83  Score=36.43  Aligned_cols=103  Identities=16%  Similarity=0.234  Sum_probs=60.9

Q ss_pred             CEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch--hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      .+|||+|. |-.|+++.+.|++-=..++.+.-.+..  ......   +. +..  +   .......+.+++.+.+|++++
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~---~p-~~~--~---~~~~~~~~~~~~~~~~dvvf~   72 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEI---FP-STL--E---NSILSEFDPEKVSKNCDVLFT   72 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHH---CG-GGC--C---CCBCBCCCHHHHHHHCSEEEE
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCccccc---Cc-hhh--c---cccccccCHhHhccccceEEE
Confidence            37999995 999999999985433567666532221  111111   10 000  0   111123577888889999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE  284 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~  284 (328)
                      ++|.... .     +...+. .+..+|+.|-.-=.+....++
T Consensus        73 a~p~~~s-~-----~~~~~~-~~~~VIDlSadfRl~~~~~y~  107 (176)
T d1vkna1          73 ALPAGAS-Y-----DLVREL-KGVKIIDLGADFRFDDPGVYR  107 (176)
T ss_dssp             CCSTTHH-H-----HHHTTC-CSCEEEESSSTTTCSSHHHHH
T ss_pred             ccccHHH-H-----HHHHhh-ccceEEecCccccccchhhHH
Confidence            9995432 2     233333 588999998655565544443

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.76  E-value=0.13  Score=43.29  Aligned_cols=39  Identities=26%  Similarity=0.316  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       162 ~l~g~tvgIiG~G-~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .|.||++-|-|.+ -||+++|+.|+ .-|++|+..|++...
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~-~~G~~V~~~~r~~~~   41 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFA-KEGARLVACDIEEGP   41 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            3789999999975 49999999984 789999999997643

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=92.73  E-value=0.16  Score=42.51  Aligned_cols=73  Identities=11%  Similarity=0.101  Sum_probs=43.7

Q ss_pred             CCCEEEEEecCHHHHHH----HHHHHh-cCCcEEE-EEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc-
Q 020301          164 KGQTVGVIGAGRIGSAY----ARMMVE-GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-  236 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~v----A~~l~~-~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-  236 (328)
                      .--++||||+|.+|..+    ...+.+ .-+++|+ ++|++.... +++.+.|       +...  ...+.++++++.. 
T Consensus        15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~-~~~~~~~-------~~~~--~~~~~~~~~l~~~~   84 (237)
T d2nvwa1          15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSS-LQTIEQL-------QLKH--ATGFDSLESFAQYK   84 (237)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHH-HHHHHHT-------TCTT--CEEESCHHHHHHCT
T ss_pred             CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHH-HHHHHhc-------cccc--ceeecchhhccccc
Confidence            33579999999855433    333321 2368877 578876432 2222222       2111  1235799999864 


Q ss_pred             -CCEEEEcCCC
Q 020301          237 -ADVISLHPVL  246 (328)
Q Consensus       237 -aDiV~l~~pl  246 (328)
                       -|+|++++|.
T Consensus        85 ~iD~V~i~tp~   95 (237)
T d2nvwa1          85 DIDMIVVSVKV   95 (237)
T ss_dssp             TCSEEEECSCH
T ss_pred             ccceeeccCCC
Confidence             6789999883

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=92.71  E-value=0.064  Score=45.83  Aligned_cols=39  Identities=23%  Similarity=0.248  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      +|.||++-|.|.+. ||+++|+.|+ .-|++|+..|++.+.
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   44 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELA-SLGASVYTCSRNQKE   44 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            68999999999875 9999999985 779999999997643

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=92.58  E-value=0.08  Score=44.84  Aligned_cols=42  Identities=26%  Similarity=0.259  Sum_probs=35.2

Q ss_pred             ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHH
Q 020301          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLE  204 (328)
Q Consensus       162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~~  204 (328)
                      .|.||++-|.|.+. ||+++|+.|+ .-|++|+..|++..+..+
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la-~~Ga~V~~~~~~~~~~~~   44 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFA-VEGADIAIADLVPAPEAE   44 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCCHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCchHHHH
Confidence            48999999999864 9999999985 789999999987654433

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=92.47  E-value=0.088  Score=42.52  Aligned_cols=106  Identities=10%  Similarity=0.060  Sum_probs=62.5

Q ss_pred             CCCEEEEE--ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHH--HHHHhhhhhhhhcCCCCCcccc---ccCCH----HH
Q 020301          164 KGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWK---RASSM----DE  232 (328)
Q Consensus       164 ~g~tvgIi--G~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~l----~e  232 (328)
                      .|.++.|+  |.|.+|+...+. ++.+|++|++.-++.....  .+...++       |....-..   ...++    .+
T Consensus        28 ~g~~vli~~ga~g~vG~~aiql-Ak~~Ga~vI~~v~~~~~~~~~~~~~~~l-------Gad~vi~~~~~~~~~~~~~v~~   99 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQI-GKLLNFNSISVIRDRPNLDEVVASLKEL-------GATQVITEDQNNSREFGPTIKE   99 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHH-HHHHTCEEEEEECCCTTHHHHHHHHHHH-------TCSEEEEHHHHHCGGGHHHHHH
T ss_pred             CCCEEEEEeCCCchHHHHHHHH-HhhcCCeEEEEEecccccchHHhhhhhc-------cccEEEeccccchhHHHHHHHH
Confidence            47889898  679999999998 5899999998765543221  1122222       22111100   01111    22


Q ss_pred             Hh----hcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC--Ccc--cCHHHHH
Q 020301          233 VL----READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR--GPV--IDEVALV  283 (328)
Q Consensus       233 ll----~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR--G~~--vde~aL~  283 (328)
                      +.    ...|+++-++.  .++    -...++.|+++..+|.++.  |..  ++...++
T Consensus       100 ~~~~~g~~vdvv~D~vg--~~~----~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~l~  152 (189)
T d1gu7a2         100 WIKQSGGEAKLALNCVG--GKS----STGIARKLNNNGLMLTYGGMSFQPVTIPTSLYI  152 (189)
T ss_dssp             HHHHHTCCEEEEEESSC--HHH----HHHHHHTSCTTCEEEECCCCSSCCEEECHHHHH
T ss_pred             HHhhccCCceEEEECCC--cch----hhhhhhhhcCCcEEEEECCccCCCccCcHHHHH
Confidence            22    23788988875  221    2567889999999999863  322  4555443

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.46  E-value=0.057  Score=40.09  Aligned_cols=34  Identities=18%  Similarity=0.225  Sum_probs=30.5

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      .+++.|||.|.+|-++|..+ +.+|.+|..+++.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l-~~~g~~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAY-RKLGAQVSVVEARE   54 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHH-HHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHH-hhcccceEEEeeec
Confidence            37899999999999999997 68999999998764

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.35  E-value=0.23  Score=39.05  Aligned_cols=37  Identities=22%  Similarity=0.248  Sum_probs=30.4

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~  201 (328)
                      .|.||.|+|.|-+|...++.+ +.+|+ +|++.|+++..
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~a-k~~G~~~vi~~~~~~~k   65 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGC-KVAGASRIIGVDINKDK   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEecchhHHHHHHHHH-HHHhcCceEEEcccHHH
Confidence            588999999999999999985 78886 67777776543

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.29  E-value=0.16  Score=42.41  Aligned_cols=37  Identities=19%  Similarity=0.206  Sum_probs=32.6

Q ss_pred             cCCCEEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       163 l~g~tvgIiG~G-~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      |+||++-|.|.+ -||+++|+.|+ .-|++|+..|++.+
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~-~~Ga~V~~~~r~~~   39 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLS-QEGAEVTICARNEE   39 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            789999999985 59999999984 78999999999754

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=92.26  E-value=0.057  Score=46.16  Aligned_cols=38  Identities=26%  Similarity=0.309  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .|.||++-|.|.+. ||+++|+.|+ ..|++|+..|++.+
T Consensus         2 rL~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~   40 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLA-EEGTAIALLDMNRE   40 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            58999999999865 9999999985 78999999998764

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=92.24  E-value=0.12  Score=41.79  Aligned_cols=38  Identities=21%  Similarity=0.329  Sum_probs=33.9

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      ....+|+|.|||-|..|.+.|..| ...|.+|..|++..
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~l-a~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINA-AARGHQVTLFDAHS   76 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHH-HTTTCEEEEEESSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHH-HhhccceEEEeccC
Confidence            456789999999999999999997 58899999999864

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=92.19  E-value=0.16  Score=43.19  Aligned_cols=38  Identities=21%  Similarity=0.268  Sum_probs=33.3

Q ss_pred             cCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          163 LKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       163 l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      |.||++-|-|.+. ||+++|+.|+ .-|++|+..|++.+.
T Consensus         2 l~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   40 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLA-AEGAKLSLVDVSSEG   40 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            7899999999875 9999999985 789999999998653

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=92.07  E-value=0.12  Score=43.39  Aligned_cols=37  Identities=22%  Similarity=0.215  Sum_probs=32.3

Q ss_pred             cCCCEEEEEecCH---HHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          163 LKGQTVGVIGAGR---IGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       163 l~g~tvgIiG~G~---IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      |.||++-|.|.+.   ||+++|+.|+ .-|++|+..+++.+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~-~~G~~V~i~~~~~~   42 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQNDK   42 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHH-HTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence            7899999999865   9999999984 78999999988743

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=92.04  E-value=0.083  Score=44.66  Aligned_cols=42  Identities=21%  Similarity=0.267  Sum_probs=34.5

Q ss_pred             ccCCCEEEEEec-CH--HHHHHHHHHHhcCCcEEEEEcCCchhHHH
Q 020301          162 LLKGQTVGVIGA-GR--IGSAYARMMVEGFKMNLIYYDLYQATRLE  204 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~--IG~~vA~~l~~~fg~~V~~~d~~~~~~~~  204 (328)
                      -|.||++-|.|. |.  ||+++|+.| ..-|++|+..+++..+..+
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~l-a~~Ga~Vil~~~~~~~~~~   47 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVA-QEQGAQLVLTGFDRLRLIQ   47 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHH-HHTTCEEEEEECSCHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHH-HHcCCEEEEEeCChHHHHH
Confidence            389999999996 54  999999998 4789999999887654433

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.89  E-value=0.1  Score=39.87  Aligned_cols=36  Identities=25%  Similarity=0.258  Sum_probs=31.9

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .++++.|||-|.+|-++|..+ ...|.+|..+++...
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l-~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATA-IKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             cCCEEEEECCchHHHHHHHHH-HhhCcceeeeeeccc
Confidence            368999999999999999997 588999999998754

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.87  E-value=0.26  Score=41.69  Aligned_cols=39  Identities=23%  Similarity=0.236  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       161 ~~l~g~tvgIiG~G-~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ..++||++-|.|.+ .||+++|+.|+ .-|++|++.+++..
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la-~~G~~Vv~~~r~~~   45 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALV-QQGLKVVGCARTVG   45 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            35999999999975 59999999985 67999999998764

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=91.86  E-value=0.11  Score=44.44  Aligned_cols=42  Identities=17%  Similarity=0.186  Sum_probs=35.1

Q ss_pred             cccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHH
Q 020301          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRL  203 (328)
Q Consensus       161 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~  203 (328)
                      .+|.||++-|.|. +-||+++|+.|+ .-|++|+..+++.++..
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la-~~G~~Vv~~~r~~~~~~   45 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFA-TEKAKVVVNYRSKEDEA   45 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcHHHH
Confidence            4799999999985 569999999985 78999999998865433

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.82  E-value=0.056  Score=46.22  Aligned_cols=39  Identities=28%  Similarity=0.307  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .|+||++-|.|.+. ||+++|+.|+ ..|++|+.++++...
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la-~~Ga~V~~~~r~~~~   44 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFA-GFGAVIHTCARNEYE   44 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            68999999999876 9999999985 789999999998643

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.81  E-value=0.3  Score=38.98  Aligned_cols=106  Identities=12%  Similarity=0.184  Sum_probs=58.6

Q ss_pred             CEEEEEe-cCHHHHHHHHHHHhcC-CcEEEEEcCCc-----hhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          166 QTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLYQ-----ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       166 ~tvgIiG-~G~IG~~vA~~l~~~f-g~~V~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      .+|+|+| -|-.|+++.+.|. .. .+++.....+.     .+.......    +.  .+..........+.+.....+|
T Consensus         2 ikVaIiGATGyvG~eLlrlL~-~HP~~ei~~l~~~s~~~~aGk~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~d   74 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVN-RHPHMTITALTVSAQSNDAGKLISDLHP----QL--KGIVDLPLQPMSDVRDFSADVD   74 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHH-HCTTEEEEEEEEETTCTTTTCBHHHHCG----GG--TTTCCCBEEEESCGGGTCTTCC
T ss_pred             cEEEEECcccHHHHHHHHHHH-hCCCCceEeeEeeccccccccccccccc----cc--ccccccccccchhhhhhhcccc
Confidence            3799999 7999999999974 44 66765542211     111111000    00  0111111222234556678899


Q ss_pred             EEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 020301          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALV  283 (328)
Q Consensus       239 iV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~  283 (328)
                      ++++++|.  +...   +..-...+.|..+|+.|..--.+....+
T Consensus        75 vvf~alp~--~~s~---~~~~~~~~~~~~vIDlSadfRl~~~~~~  114 (179)
T d2g17a1          75 VVFLATAH--EVSH---DLAPQFLQAGCVVFDLSGAFRVNDRAFY  114 (179)
T ss_dssp             EEEECSCH--HHHH---HHHHHHHHTTCEEEECSSTTSSSCHHHH
T ss_pred             eeeccccc--hhHH---HHhhhhhhcCceeecccccccccccccc
Confidence            99999992  2222   1122224578999999865555444433

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.78  E-value=0.21  Score=43.39  Aligned_cols=39  Identities=26%  Similarity=0.354  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .|.||++-|.|.+. ||+++|+.|+ .-|++|++.+++.+.
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la-~~Ga~Vvi~~r~~~~   48 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELL-ELGSNVVIASRKLER   48 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            59999999999765 9999999985 779999999998653

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=91.49  E-value=0.21  Score=40.18  Aligned_cols=103  Identities=17%  Similarity=0.154  Sum_probs=64.8

Q ss_pred             ccCCCEEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCch---hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc
Q 020301          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (328)
Q Consensus       162 ~l~g~tvgIiG~G--~IG~~vA~~l~~~fg~~V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (328)
                      .+.|.+|++||=|  ++..+++..+ ..|||++.+..|..-   ....+....+   ....+   .......++++.++.
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~-~~~g~~l~~~~P~~~~~~~~~~~~~~~~---~~~~g---~~~~~~~d~~~a~~~   74 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEAALVTECRAL---AQQNG---GNITLTEDVAKGVEG   74 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHH-HHHCCEEEEECCGGGCCCHHHHHHHHHH---HHHTT---CEEEEESCHHHHHTT
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHH-HHcCCEEEEEechHhhhhHHHHHHHHHH---HHhcC---CceEEEechhhcccc
Confidence            4778999999965  7889999986 689999999988532   1111111111   11111   122335789999999


Q ss_pred             CCEEEEcCCCC----hh----------hhccccHHHHhcCCCCcEEEEc
Q 020301          237 ADVISLHPVLD----KT----------TYHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       237 aDiV~l~~plt----~~----------t~~li~~~~~~~mk~ga~lIN~  271 (328)
                      +|+|..-.=..    .+          ....+++.....++++++|.-+
T Consensus        75 aDvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~  123 (183)
T d1duvg2          75 ADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHC  123 (183)
T ss_dssp             CSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEEC
T ss_pred             CCEEEEEehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEcc
Confidence            99996533211    11          1123455556678889988876

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=91.49  E-value=0.37  Score=37.49  Aligned_cols=111  Identities=14%  Similarity=0.153  Sum_probs=58.9

Q ss_pred             CEEEEEec-CHHHHHHHHHHHh--cC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEE
Q 020301          166 QTVGVIGA-GRIGSAYARMMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~--~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  241 (328)
                      .+|||||. |-.|+++.++|..  .| ..++..+..+.....  .       ..-.+ .........+ .+.++++|+++
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk--~-------~~~~~-~~~~~~~~~~-~~~~~~~DvvF   69 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVP--A-------PNFGK-DAGMLHDAFD-IESLKQLDAVI   69 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSB--C-------CCSSS-CCCBCEETTC-HHHHTTCSEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccccc--c-------cccCC-cceeeecccc-hhhhccccEEE
Confidence            36999985 9999999987642  12 356665543322100  0       00000 0001111122 35579999999


Q ss_pred             EcCCCChhhhccccHHHHhcCCCCcEEEEcCCCc-----------ccCHHHHHHHHHcCC
Q 020301          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-----------VIDEVALVEHLKQNP  290 (328)
Q Consensus       242 l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~-----------~vde~aL~~aL~~g~  290 (328)
                      +|+|. ..+.. +-...+ .-..++++|+.|.--           =|+.+.+.+++++|+
T Consensus        70 ~alp~-~~s~~-~~~~l~-~~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~~  126 (147)
T d1mb4a1          70 TCQGG-SYTEK-VYPALR-QAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGT  126 (147)
T ss_dssp             ECSCH-HHHHH-HHHHHH-HTTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             EecCc-hHHHH-HhHHHH-HcCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcCC
Confidence            99993 22222 222222 223345677776321           156678888887764

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.39  E-value=0.13  Score=43.94  Aligned_cols=38  Identities=18%  Similarity=0.174  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .|.||++-|.|.+. ||+++|+.|+ .-|++|+..+++.+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la-~~Ga~V~l~~r~~~   40 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFA-QEGANVTITGRSSE   40 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            48999999999754 9999999985 78999999999864

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=91.19  E-value=0.17  Score=40.40  Aligned_cols=34  Identities=24%  Similarity=0.341  Sum_probs=27.4

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ++||=|||+|||.+.|.+...-.++|.+.+....
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~~~   36 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLD   36 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSC
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCCC
Confidence            6999999999999999875555788888765443

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=90.99  E-value=0.18  Score=43.26  Aligned_cols=38  Identities=24%  Similarity=0.288  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .|.||++-|-|. +-||+++|+.|+ .-|++|+..|++.+
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~   40 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFV-AEGAKVAVLDKSAE   40 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            378999999997 579999999985 77999999999864

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.98  E-value=1.1  Score=34.70  Aligned_cols=39  Identities=26%  Similarity=0.227  Sum_probs=31.0

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      -.|.+|.|+|.|.+|...+..+++..+.+|++.|++..+
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r   65 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK   65 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHH
Confidence            358899999999999999988643444579999988754

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=90.87  E-value=1.2  Score=35.29  Aligned_cols=104  Identities=13%  Similarity=0.042  Sum_probs=64.6

Q ss_pred             CCeEEEEeCCCCc------hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhc-CCccEEEecCCCCc----cHHHHHHh
Q 020301           14 GKYRVVSTKPMPG------TRWINLLIEQDCRVEICTQKKTILSVEDIIALIG-DKCDGVIGQLTEDW----GETLFAAL   82 (328)
Q Consensus        14 ~~~~vlv~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~d~li~~~~~~~----~~~~l~~~   82 (328)
                      .++|||+...-++      ..+...|+..|++|....   ...++|++.+.+. .++|+|.+++...-    -+++.+.|
T Consensus        36 r~pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg---~~~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~L  112 (168)
T d7reqa2          36 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGP---LFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKEL  112 (168)
T ss_dssp             SCCEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECC---TTBCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCccHHHHHHHHHHHHHHhCCcceecCC---CcCcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHHHH
Confidence            4567777543222      123467888999986432   2347888886654 37898877643222    24555667


Q ss_pred             hccCC-ceEEEccccCCccChhHHHhCCceEecCCCCCC
Q 020301           83 SRAGG-KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT  120 (328)
Q Consensus        83 ~~l~~-k~i~~~g~G~d~id~~~~~~~gI~v~n~p~~~~  120 (328)
                      .+.|. .+....|--+-.-|.+..++.|+.-+-.||.+.
T Consensus       113 ~~~g~~~v~VivGG~ip~~d~~~l~~~Gv~~iF~pgt~~  151 (168)
T d7reqa2         113 DKLGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVI  151 (168)
T ss_dssp             HHTTCTTSEEEEEESCCGGGHHHHHHHTEEEEECTTCCH
T ss_pred             HhcCCCCeEEEEeCCCCHHHHHHHHhCCCCEEECcCCCH
Confidence            66654 343333322356788888999998888999653

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=90.84  E-value=0.22  Score=42.13  Aligned_cols=40  Identities=23%  Similarity=0.351  Sum_probs=33.5

Q ss_pred             cCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHH
Q 020301          163 LKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRL  203 (328)
Q Consensus       163 l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~~~  203 (328)
                      |.||++-|.|.+. ||+++|+.|+ .-|++|+..+++.....
T Consensus         2 L~gK~alITGas~GIG~aiA~~la-~~Ga~V~~~~r~~~~~~   42 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALA-AQGADIVLNGFGDAAEI   42 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEECCSCHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCcHHHH
Confidence            6899999988766 9999999985 78999999998764433

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=90.76  E-value=0.27  Score=41.58  Aligned_cols=38  Identities=18%  Similarity=0.032  Sum_probs=31.8

Q ss_pred             ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      +|.||++-|.|.+. ||+++|+.|+ .-|++|+..+++.+
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la-~~G~~vii~~r~~~   40 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELV-KRNLKNFVILDRVE   40 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHH-HTCCSEEEEEESSC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHH-HCCCEEEEEECCcc
Confidence            58899999999985 9999999985 78999877765543

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.74  E-value=0.099  Score=42.16  Aligned_cols=95  Identities=21%  Similarity=0.204  Sum_probs=62.0

Q ss_pred             CCCEEEEEe-cCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhc-----
Q 020301          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-----  236 (328)
Q Consensus       164 ~g~tvgIiG-~G~IG~~vA~~l~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-----  236 (328)
                      .+.+|.|.| .|.+|+..++. ++.+|++ |++.+.+.+.... ..       +..+....-.....++.+.+++     
T Consensus        30 ~~etVLI~gaaGgVG~~aiQl-ak~~Ga~~vi~~~~~~e~~~~-l~-------~~~gad~vi~~~~~~~~~~~~~~~~~G  100 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQI-GHLLGCSRVVGICGTQEKCLF-LT-------SELGFDAAVNYKTGNVAEQLREACPGG  100 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHH-HHHTTCSEEEEEESSHHHHHH-HH-------HHSCCSEEEETTSSCHHHHHHHHCTTC
T ss_pred             CCCEEEEECCCchhhHHHHHH-HHHcCCcceecccchHHHHhh-hh-------hcccceEEeeccchhHHHHHHHHhccC
Confidence            357899999 59999999998 5899985 5555655433211 11       1223333322334567776666     


Q ss_pred             CCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       237 aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      .|+|+-++-  .+    .-+..++.++++..++.++.
T Consensus       101 vDvv~D~vG--g~----~~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         101 VDVYFDNVG--GD----ISNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             EEEEEESSC--HH----HHHHHHTTEEEEEEEEEC--
T ss_pred             ceEEEecCC--ch----hHHHHhhhccccccEEEecc
Confidence            999998875  22    23567899999999998864

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.71  E-value=0.17  Score=42.95  Aligned_cols=37  Identities=27%  Similarity=0.347  Sum_probs=32.9

Q ss_pred             cCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       163 l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      |.||++-|.|. +-||+++|+.|+ ..|++|+..|++.+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~   40 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYV-REGARVAIADINLE   40 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHH-HTTEEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            78999999998 569999999985 78999999998764

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=90.49  E-value=0.34  Score=41.13  Aligned_cols=38  Identities=18%  Similarity=0.378  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .|.||++-|.|.+. ||+++|+.|+ .-|++|+..|++..
T Consensus         3 rL~gKvalITGas~GIG~aia~~la-~~Ga~V~i~~r~~~   41 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFV-RYGAKVVIADIADD   41 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            48999999999654 9999999985 77999999998764

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.38  E-value=0.67  Score=36.95  Aligned_cols=113  Identities=18%  Similarity=0.146  Sum_probs=65.7

Q ss_pred             CCEEEEEec-CHHHHHHHHHHHhc--CCc----EEEEEcCCchhH-HHHHHhhhhhhhhcCCCCC--ccccccCCHHHHh
Q 020301          165 GQTVGVIGA-GRIGSAYARMMVEG--FKM----NLIYYDLYQATR-LEKFVTAYGQFLKANGEQP--VTWKRASSMDEVL  234 (328)
Q Consensus       165 g~tvgIiG~-G~IG~~vA~~l~~~--fg~----~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell  234 (328)
                      -.+|.|+|. |.||+.++-+|+.+  ||.    .+..+|...... .+....+    . .+...+  .......+..+.+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~md----l-~d~a~~~~~~~~~~~~~~~~~   98 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAME----L-EDSLYPLLREVSIGIDPYEVF   98 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHH----H-HTTTCTTEEEEEEESCHHHHT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhh----h-cccccccccCccccccchhhc
Confidence            347999996 99999999887543  553    677778765322 2221110    0 111111  1223346889999


Q ss_pred             hcCCEEEEcCCCC--h-hhh--------cccc--HHHHhc-CCCCcEEEEcCCCcccCHHHHHH
Q 020301          235 READVISLHPVLD--K-TTY--------HLIN--KERLAT-MKKEAILVNCSRGPVIDEVALVE  284 (328)
Q Consensus       235 ~~aDiV~l~~plt--~-~t~--------~li~--~~~~~~-mk~ga~lIN~aRG~~vde~aL~~  284 (328)
                      +.||+|++..-..  | +|+        .++-  .+.+.+ .+++++++=++  ..+|.-+++.
T Consensus        99 ~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~--NPvd~~t~ia  160 (175)
T d7mdha1          99 EDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG--NPCNTNALIC  160 (175)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS--SSHHHHHHHH
T ss_pred             cCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec--CcHHHHHHHH
Confidence            9999999886322  1 111        1110  123333 46678777774  4688888763

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.37  E-value=0.19  Score=42.50  Aligned_cols=38  Identities=24%  Similarity=0.331  Sum_probs=32.5

Q ss_pred             cCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          163 LKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       163 l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      +.||++-|.|.+. ||+++|+.|+ .-|++|+..|++.++
T Consensus         1 i~GKvalITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   39 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALL-LKGAKVALVDWNLEA   39 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            4699999999854 9999999985 789999999998654

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.25  E-value=0.36  Score=37.60  Aligned_cols=76  Identities=18%  Similarity=0.103  Sum_probs=45.5

Q ss_pred             EEEEEe-cCHHHHHHHHHHHh--cCC----cEEEEEcCCchhHHHHHHhhhhhhhhcCCC-CCccccccCCHHHHhhcCC
Q 020301          167 TVGVIG-AGRIGSAYARMMVE--GFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       167 tvgIiG-~G~IG~~vA~~l~~--~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ell~~aD  238 (328)
                      +|.||| .|.+|+.+|-.|+.  -|+    ..+..+|........+-.+.   ....... .........+.++.++.||
T Consensus         5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d   81 (154)
T d5mdha1           5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLM---ELQDCALPLLKDVIATDKEEIAFKDLD   81 (154)
T ss_dssp             EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHH---HHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhh---hhcccccccccccccCcccccccCCce
Confidence            799999 59999999988742  133    36778887654322111110   0011111 1112233467889999999


Q ss_pred             EEEEcCC
Q 020301          239 VISLHPV  245 (328)
Q Consensus       239 iV~l~~p  245 (328)
                      +|+++.-
T Consensus        82 vVVitag   88 (154)
T d5mdha1          82 VAILVGS   88 (154)
T ss_dssp             EEEECCS
T ss_pred             EEEEecc
Confidence            9998863

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.21  E-value=0.099  Score=44.47  Aligned_cols=38  Identities=24%  Similarity=0.325  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~G-~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .|.||++-|-|.+ -||+++|++|+ .-|++|+..+++.+
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~   46 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFA-TAGASVVVSDINAD   46 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHH-TTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            5899999999985 59999999985 78999999998764

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.21  E-value=0.11  Score=40.41  Aligned_cols=91  Identities=14%  Similarity=0.158  Sum_probs=49.2

Q ss_pred             CEEEEEec-CHHHHHHHHHHHh-cC-CcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          166 QTVGVIGA-GRIGSAYARMMVE-GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~-~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      .+|||||. |-+|+++.+.|.+ .+ ..++.....+...-         ..... ......  ....-++.+..+|++++
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~G---------k~i~~-~~~~~~--~~~~~~~~~~~~d~vf~   70 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAG---------QRMGF-AESSLR--VGDVDSFDFSSVGLAFF   70 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTT---------CEEEE-TTEEEE--CEEGGGCCGGGCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCC---------cceee-ccccch--hccchhhhhccceEEEe
Confidence            46999987 9999999999742 33 34555443221110         00000 000000  01112345788999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      ++|. ..+..+. ..   ..+.|..+|+.|.
T Consensus        71 a~p~-~~s~~~~-~~---~~~~g~~VID~Ss   96 (144)
T d2hjsa1          71 AAAA-EVSRAHA-ER---ARAAGCSVIDLSG   96 (144)
T ss_dssp             CSCH-HHHHHHH-HH---HHHTTCEEEETTC
T ss_pred             cCCc-chhhhhc-cc---cccCCceEEeech
Confidence            9983 2222222 22   2357899999864

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=90.20  E-value=0.57  Score=40.86  Aligned_cols=108  Identities=19%  Similarity=0.332  Sum_probs=68.0

Q ss_pred             ccCCCEEEEEec---CHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcC
Q 020301          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (328)
Q Consensus       162 ~l~g~tvgIiG~---G~IG~~vA~~l~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (328)
                      .+.|++++++|-   +++..+.+..+ ..|| +++.++.|..-...+...+    .++..+   ..+....++++.++.+
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~-~~~~~~~~~i~~P~~~~~~~~~~~----~~~~~~---~~~~~~~d~~~a~~~a  222 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYILD----MLDEKG---IAWSLHSSIEEVMAEV  222 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHH-TTSSSCEEEEECCGGGCCCHHHHH----HHHTTT---CCEEEESCGGGTTTTC
T ss_pred             CcccceEEEEeccccCcchHHHHHHH-HhccCceEEEeCCcccccchhccc----cccccc---ceeeeeechhhhccCC
Confidence            488999999997   78888988876 5784 7898887743221111111    112222   1233456899999999


Q ss_pred             CEEEEcCCCChh----------hhccccHHHHhcCCCCcEEEEc-CCCccc
Q 020301          238 DVISLHPVLDKT----------TYHLINKERLATMKKEAILVNC-SRGPVI  277 (328)
Q Consensus       238 DiV~l~~plt~~----------t~~li~~~~~~~mk~ga~lIN~-aRG~~v  277 (328)
                      |+|....--.+.          ...-++.+.++.+|++++|.-+ =||.=|
T Consensus       223 Dvvy~~~~~~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHcLPRg~EI  273 (310)
T d1tuga1         223 DILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEI  273 (310)
T ss_dssp             SEEEECCCCGGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECCSCCSSSB
T ss_pred             ceeeecccchhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeCCCCCCEe
Confidence            999753221111          1133678888889999888754 355433

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.09  E-value=0.24  Score=40.86  Aligned_cols=45  Identities=27%  Similarity=0.405  Sum_probs=36.2

Q ss_pred             CCCCcccccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       153 w~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      |.+... ...-.+++|.|||.|..|...|..| +..|++|..+++..
T Consensus        38 ~~p~~~-~~~~~~k~VvIIGaGpAGl~aA~~l-~~~G~~v~l~E~~~   82 (233)
T d1djqa3          38 WHPEKF-RQTKNKDSVLIVGAGPSGSEAARVL-MESGYTVHLTDTAE   82 (233)
T ss_dssp             CCSSCC-CCCSSCCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CCCCcc-CcccCCceEEEEcccHHHHHHHHHH-HHhccceeeEeecc
Confidence            544332 2346899999999999999999997 57899999998764

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=90.05  E-value=0.11  Score=44.49  Aligned_cols=39  Identities=18%  Similarity=0.164  Sum_probs=33.7

Q ss_pred             cccCCCEEEEEecC---HHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       161 ~~l~g~tvgIiG~G---~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .+|.||++-|.|.+   -||+++|+.|+ ..|++|+..++...
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la-~~Ga~Vvi~~~~~~   45 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLA-AAGAEILVGTWVPA   45 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHH-HTTCEEEEEEEHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHH-HCCCEEEEEeCchh
Confidence            57999999999986   49999999985 78999999887643

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=89.94  E-value=0.27  Score=41.39  Aligned_cols=38  Identities=21%  Similarity=0.187  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~G-~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .|.||++-|.|.+ -||+++|++|+ .-|++|+..+++.+
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~   41 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFV-EEGAKVMITGRHSD   41 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            4899999999964 49999999985 78999999999764

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=89.70  E-value=0.94  Score=36.09  Aligned_cols=98  Identities=14%  Similarity=0.191  Sum_probs=52.4

Q ss_pred             CEEEEEec-CHHHHHHHHHHHhcCCcEEEEEc-CCch-hHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEE
Q 020301          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYD-LYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l  242 (328)
                      -+|||||. |-.|+++.++|..-=.+++.+.. ++.. ....+.   + .+.....   . .......++.++.+|++++
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~---~-~~~~~~~---~-~~~~~~~~~~~~~~Dvvf~   77 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSV---F-PHLITQD---L-PNLVAVKDADFSNVDAVFC   77 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHH---C-GGGTTSC---C-CCCBCGGGCCGGGCSEEEE
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccc---c-ccccccc---c-ccchhhhhhhhcccceeee
Confidence            46999995 99999999998533356766553 2221 111111   1 0111000   0 0111234566789999999


Q ss_pred             cCCCChhhhccccHHHHhcCCCCcEEEEcCCCccc
Q 020301          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (328)
Q Consensus       243 ~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~v  277 (328)
                      ++|...      ..+....+......|+.+.+.-.
T Consensus        78 alp~~~------s~~~~~~l~~~~~~v~~~~~~~~  106 (183)
T d2cvoa1          78 CLPHGT------TQEIIKGLPQELKIVDLSADFRL  106 (183)
T ss_dssp             CCSSSH------HHHHHHTSCSSCEEEECSSTTTC
T ss_pred             ccccch------HHHHHHHHHhcCcccccchhhhc
Confidence            999432      23333445445555555544443

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.56  E-value=0.22  Score=42.06  Aligned_cols=40  Identities=25%  Similarity=0.250  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       161 ~~l~g~tvgIiG~G-~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      ..|.||++-|.|.+ -||+++|+.| ..-|++|+.++++.+.
T Consensus         6 f~lenKvalITGas~GIG~a~a~~l-a~~Ga~V~~~~r~~~~   46 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKML-AKSVSHVICISRTQKS   46 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHH-TTTSSEEEEEESSHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEECCHHH
Confidence            36889999999984 6999999998 4789999999997643

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.55  E-value=0.19  Score=40.28  Aligned_cols=112  Identities=14%  Similarity=0.214  Sum_probs=58.2

Q ss_pred             EEEEEecCHHHHHHHHHHHh--cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcC
Q 020301          167 TVGVIGAGRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~--~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  244 (328)
                      +|||=|||+|||.+.|.+..  ..+.+|.+.+-....+.-.+.=.|..   -+|..+.      +.   -..-|.+.+  
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS---~hG~~~~------~v---~~~~~~l~i--   67 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDS---VHKKFPG------KV---EYTENSLIV--   67 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCT---TTCCCSS------CE---EECSSEEEE--
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccc---cccccCc------eE---EEECCEEEE--
Confidence            79999999999999998643  34678877754333222222111210   0111111      11   112344433  


Q ss_pred             CCChhhhccccHHHHhcCC---CCc-EEEEcCCCcccCHHHHHHHHHcCCccEEEE
Q 020301          245 VLDKTTYHLINKERLATMK---KEA-ILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (328)
Q Consensus       245 plt~~t~~li~~~~~~~mk---~ga-~lIN~aRG~~vde~aL~~aL~~g~i~gaal  296 (328)
                        +...-.+++....+.++   -|. ++|.+ .|.--+.+.+...|+.| ....-+
T Consensus        68 --ng~~I~~~~~~~p~~i~W~~~gvD~ViEc-TG~f~t~~~~~~hl~~G-akkVii  119 (169)
T d1hdgo1          68 --DGKEIKVFAEPDPSKLPWKDLGVDFVIES-TGVFRNREKAELHLQAG-AKKVII  119 (169)
T ss_dssp             --TTEEEEEECCSSGGGSCHHHHTCCEEEEC-SSSCCBHHHHTHHHHTT-CSEEEE
T ss_pred             --CCEEEEEEeCCChhhCCccccCCCEEEEe-cceeccccchhhhccCC-CceEEE
Confidence              23333444444333332   133 45554 67777888888888876 444444

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=89.55  E-value=0.17  Score=40.48  Aligned_cols=34  Identities=32%  Similarity=0.489  Sum_probs=26.1

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEE-cCCch
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQA  200 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~-d~~~~  200 (328)
                      +|||=|||+||+.+.|.+...-..+|.+. |+..+
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~~   37 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFID   37 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSC
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCcc
Confidence            79999999999999997654446787776 44443

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=89.34  E-value=0.19  Score=40.36  Aligned_cols=31  Identities=23%  Similarity=0.398  Sum_probs=23.5

Q ss_pred             EEEEEecCHHHHHHHHHHHh--cCCcEEEEEcC
Q 020301          167 TVGVIGAGRIGSAYARMMVE--GFKMNLIYYDL  197 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~--~fg~~V~~~d~  197 (328)
                      +|||=|||+||+.+.|.+..  ....+|.+.+-
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd   34 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVIND   34 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcC
Confidence            79999999999999997532  23377776643

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.03  E-value=0.16  Score=43.02  Aligned_cols=40  Identities=23%  Similarity=0.193  Sum_probs=32.3

Q ss_pred             cccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      +.|.||++-|.|.+. ||+++|+.|+ .-|++|+..+++...
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la-~~G~~Vvi~~~~~~~   42 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELG-RRGASVVVNYGSSSK   42 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEcCCChH
Confidence            469999999998766 9999999984 789999875554433

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=89.01  E-value=0.1  Score=43.99  Aligned_cols=37  Identities=27%  Similarity=0.433  Sum_probs=31.8

Q ss_pred             cccCCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCC
Q 020301          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (328)
Q Consensus       161 ~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~  198 (328)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|..
T Consensus        26 ~kL~~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          26 EALKDSRVLIVGLGGLGCAASQYLA-SAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCC
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHH-HcCCCeEEEECCc
Confidence            3499999999999999999999984 6777 78888864

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=88.85  E-value=0.25  Score=41.80  Aligned_cols=38  Identities=21%  Similarity=0.434  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~G-~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .|.||++-|.|.+ -||+++|++|+ .-|++|+..|++.+
T Consensus         3 rL~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~~~~~   41 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLL-GEGAKVAFSDINEA   41 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEECSCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            4899999999965 49999999985 78999999998764

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=88.80  E-value=0.17  Score=42.64  Aligned_cols=35  Identities=20%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      ..|+|.|||.|..|...|..|+ ..|.+|.+++...
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~-~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLA-GAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHH-HHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHH-HCCCCEEEEeCCC
Confidence            5579999999999999999985 5699999999754

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.65  E-value=0.2  Score=38.15  Aligned_cols=27  Identities=22%  Similarity=0.538  Sum_probs=22.8

Q ss_pred             EEEEEec-CHHHHHHHHHHHhcCCcEEEE
Q 020301          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIY  194 (328)
Q Consensus       167 tvgIiG~-G~IG~~vA~~l~~~fg~~V~~  194 (328)
                      ++||+|+ |+||+.+++.+ ..-|+++.+
T Consensus         2 ki~i~G~~GrMG~~i~~~~-~~~~~~l~~   29 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVF-SEKGHELVL   29 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HHTTCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHH-hcCCCeEEE
Confidence            6999997 99999999985 677887663

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=88.59  E-value=0.22  Score=40.63  Aligned_cols=34  Identities=21%  Similarity=0.192  Sum_probs=29.9

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      -++|.|||.|-.|-..|..| +.-|.+|.++|+..
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L-~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALIL-ARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHH-HHCCCCEEEEeCCC
Confidence            35799999999999999998 46799999999853

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.41  E-value=0.24  Score=40.50  Aligned_cols=82  Identities=12%  Similarity=0.187  Sum_probs=48.9

Q ss_pred             EEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchh-------------HHHHHHhhhhhhhhcCCCCCc---cccccCC
Q 020301          167 TVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQAT-------------RLEKFVTAYGQFLKANGEQPV---TWKRASS  229 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~-~fg~~V~~~d~~~~~-------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  229 (328)
                      +|+|||-|..|...|+.|++ ++|.+|.+||+.+..             ........+..+....+..-.   ......+
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGRDVT   82 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTTTBC
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCcccc
Confidence            79999999999999987643 689999999987532             000111111122222221111   0111236


Q ss_pred             HHHHhhcCCEEEEcCCCCh
Q 020301          230 MDEVLREADVISLHPVLDK  248 (328)
Q Consensus       230 l~ell~~aDiV~l~~plt~  248 (328)
                      ++++....|.|++++-.++
T Consensus        83 ~~~l~~~~d~v~~a~Ga~~  101 (230)
T d1cjca2          83 VQELQDAYHAVVLSYGAED  101 (230)
T ss_dssp             HHHHHHHSSEEEECCCCCE
T ss_pred             HHHHHhhhceEEEEeeccc
Confidence            7777778888888776543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.40  E-value=0.29  Score=41.64  Aligned_cols=38  Identities=21%  Similarity=0.271  Sum_probs=32.3

Q ss_pred             CCCEEEEE--ecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          164 KGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       164 ~g~tvgIi--G~G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .||+|.||  |-+-||+++|+.|++..|.+|+.++|+.+.
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~   40 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTR   40 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            48899988  778899999999865569999999998754

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.37  E-value=0.73  Score=38.43  Aligned_cols=37  Identities=24%  Similarity=0.274  Sum_probs=31.9

Q ss_pred             cCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       163 l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      |.||++-|.|. +.||+++|+.|+ .-|++|+..|++..
T Consensus         4 l~gK~alITGas~GIG~aia~~la-~~G~~Vi~~~r~~~   41 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFA-REGAKVIATDINES   41 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence            88999888875 579999999985 77999999999864

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=88.35  E-value=0.26  Score=40.65  Aligned_cols=35  Identities=17%  Similarity=0.239  Sum_probs=30.8

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      ..++|.|||.|..|..+|..|+ ..|.+|.++++..
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~-~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLR-DAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHH-HTTCEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHH-HCCCCEEEEeCCC
Confidence            4578999999999999999984 6799999999864

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=88.21  E-value=0.39  Score=42.17  Aligned_cols=33  Identities=15%  Similarity=0.138  Sum_probs=27.0

Q ss_pred             CEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       166 ~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      |.+.|.| .|-||+.+++.|. ..|.+|++.|+..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll-~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLL-EKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHH-HCcCEEEEEECCC
Confidence            5666888 8999999999984 6799999999864

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=88.17  E-value=0.22  Score=39.95  Aligned_cols=32  Identities=25%  Similarity=0.410  Sum_probs=25.8

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~  198 (328)
                      +|||=|||+||+.+.|.+...-..+|.+.+..
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd~   34 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVNDL   34 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcCC
Confidence            69999999999999998654446888877643

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=88.13  E-value=0.22  Score=36.66  Aligned_cols=35  Identities=11%  Similarity=0.038  Sum_probs=28.4

Q ss_pred             CCEEEEEecCHHHHHHHHHHH--hcCCcEEEEEcCCc
Q 020301          165 GQTVGVIGAGRIGSAYARMMV--EGFKMNLIYYDLYQ  199 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~--~~fg~~V~~~d~~~  199 (328)
                      .+++.|||.|.+|-++|..++  +..|.+|..+.+.+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence            378999999999999997642  24589999888764

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=88.09  E-value=0.3  Score=42.62  Aligned_cols=77  Identities=14%  Similarity=0.149  Sum_probs=47.6

Q ss_pred             CCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcccc---ccCCHHHHhhcCCEE
Q 020301          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK---RASSMDEVLREADVI  240 (328)
Q Consensus       165 g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~aDiV  240 (328)
                      .|||.|+|. |.||+.+++.|. .-|.+|.+..|++.........      ...+.......   ....++.++..+|.+
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll-~~G~~V~~l~R~~~~~~~~~~~------~~~~v~~~~gD~~d~~~~~~~a~~~~~~~   75 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAA-AVGHHVRAQVHSLKGLIAEELQ------AIPNVTLFQGPLLNNVPLMDTLFEGAHLA   75 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHH-HTTCCEEEEESCSCSHHHHHHH------TSTTEEEEESCCTTCHHHHHHHHTTCSEE
T ss_pred             CCEEEEECCChHHHHHHHHHHH-hCCCeEEEEECCcchhhhhhhc------ccCCCEEEEeeCCCcHHHHHHHhcCCceE
Confidence            578999994 999999999984 6789999888765432211111      01111111100   111256788899999


Q ss_pred             EEcCCCCh
Q 020301          241 SLHPVLDK  248 (328)
Q Consensus       241 ~l~~plt~  248 (328)
                      ++..+...
T Consensus        76 ~~~~~~~~   83 (350)
T d1xgka_          76 FINTTSQA   83 (350)
T ss_dssp             EECCCSTT
T ss_pred             Eeeccccc
Confidence            88776543

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.74  E-value=0.27  Score=39.11  Aligned_cols=35  Identities=20%  Similarity=0.352  Sum_probs=27.2

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEc-CCchh
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQAT  201 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d-~~~~~  201 (328)
                      +|||=|||+|||.+.|.+...-..+|.+.+ +..+.
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd~~~d~   37 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDL   37 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCCH
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECCCCCCh
Confidence            699999999999999986544468888775 55443

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=87.73  E-value=0.14  Score=41.02  Aligned_cols=33  Identities=24%  Similarity=0.450  Sum_probs=25.9

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEc-CCch
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQA  200 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d-~~~~  200 (328)
                      +|||=|||+|||.+.|.+. ..+.+|.+.+ +..+
T Consensus         2 kIgINGfGRIGR~~~R~~~-~~~~~ivaINd~~~~   35 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAAL-EMGAQVVAVNDPFIA   35 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHH-HHTCCEEEEECTTSC
T ss_pred             eEEEECCcHHHHHHHHHHH-hCCCcEEEECCCCcC
Confidence            6999999999999999864 4577777664 4444

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=87.49  E-value=0.29  Score=39.19  Aligned_cols=113  Identities=15%  Similarity=0.189  Sum_probs=57.7

Q ss_pred             EEEEEecCHHHHHHHHHHHh---cCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEc
Q 020301          167 TVGVIGAGRIGSAYARMMVE---GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~---~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~  243 (328)
                      +|||=|||+||+.+.|.+..   .-..+|.+.+.......-.+.=.|.      .... .+   .  .++-...|.+.+ 
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyD------S~hG-~~---~--~~v~~~~~~l~i-   69 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYD------TAHG-KF---P--GTVSVNGSYMVV-   69 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEE------TTTE-EC---S--SCEEEETTEEEE-
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhccc------ccCC-Cc---C--ceEEeccceEEE-
Confidence            69999999999999998642   2256777776433332222221121      1100 00   0  111233444443 


Q ss_pred             CCCChhhhccccHHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHHcCCccEEEE
Q 020301          244 PVLDKTTYHLINKERLATMK---KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (328)
Q Consensus       244 ~plt~~t~~li~~~~~~~mk---~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaal  296 (328)
                         +-....+++....+.++   -|.=+|==+.|.--+.+.+..-|+.|- ...-+
T Consensus        70 ---~g~~i~i~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~Ga-kkVii  121 (173)
T d1obfo1          70 ---NGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGA-KKVII  121 (173)
T ss_dssp             ---TTEEEEEECCSCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTC-SEEEE
T ss_pred             ---CCEEEEEEecCCHHHCcccccccceEEEecccccCHHHHHHHhccCC-cceEE
Confidence               23334444444333332   233333334566677788888888773 44444

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.42  E-value=0.19  Score=42.15  Aligned_cols=38  Identities=21%  Similarity=0.160  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .|.||++-|.|.+. ||+++|+.|+ .-|++|+..+++..
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la-~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLA-ADGHKVAVTHRGSG   42 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCcc
Confidence            68999999999875 9999999985 78999999998754

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.16  E-value=0.3  Score=37.49  Aligned_cols=31  Identities=29%  Similarity=0.552  Sum_probs=24.4

Q ss_pred             EEEEEe-cCHHHHHHHHHHHhcCCcEEE-EEcC
Q 020301          167 TVGVIG-AGRIGSAYARMMVEGFKMNLI-YYDL  197 (328)
Q Consensus       167 tvgIiG-~G~IG~~vA~~l~~~fg~~V~-~~d~  197 (328)
                      +|+|+| .|+||+.+++.+.+.-++++. ++|+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~   33 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDA   33 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            689999 699999999986566678865 4444

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=87.12  E-value=0.38  Score=40.03  Aligned_cols=35  Identities=20%  Similarity=0.212  Sum_probs=29.7

Q ss_pred             CCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       165 g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      -|+|.|.|. |.||+.+++.|. .-|.+|++.+|...
T Consensus         3 kkKILVtGatG~iG~~l~~~L~-~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASL-DLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHH-HTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHH-HCCCeEEEEECCCc
Confidence            367999996 999999999984 66999999998654

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.06  E-value=0.64  Score=36.02  Aligned_cols=112  Identities=23%  Similarity=0.263  Sum_probs=58.2

Q ss_pred             CEEEEEec-CHHHHHHHHHHHhc--CCc----EEEEEcCCchhH-HHHHHhhhhhhhhcCC-CCCccccccCCHHHHhhc
Q 020301          166 QTVGVIGA-GRIGSAYARMMVEG--FKM----NLIYYDLYQATR-LEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLRE  236 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~~--fg~----~V~~~d~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~  236 (328)
                      .+|.|+|. |.+|+.+|-.|+.+  ||.    ....++...... .+.....    ..... ..........+..+.++.
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~   80 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVME----LEDCAFPLLAGLEATDDPKVAFKD   80 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH----HHTTTCTTEEEEEEESCHHHHTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhh----hhccccccccccccCCchhhhccc
Confidence            37999996 99999999987421  331    233333332221 1111110    00111 111122234577899999


Q ss_pred             CCEEEEcCCC--Chh-hh-ccc--cHH-------HHhc-CCCCcEEEEcCCCcccCHHHHH
Q 020301          237 ADVISLHPVL--DKT-TY-HLI--NKE-------RLAT-MKKEAILVNCSRGPVIDEVALV  283 (328)
Q Consensus       237 aDiV~l~~pl--t~~-t~-~li--~~~-------~~~~-mk~ga~lIN~aRG~~vde~aL~  283 (328)
                      ||+|+++.-.  .|. ++ .++  |.+       .+.+ .+++++++.++.  .+|.-..+
T Consensus        81 advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t~~  139 (154)
T d1y7ta1          81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNALI  139 (154)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHH
T ss_pred             ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHHHH
Confidence            9999998632  221 22 122  111       2223 456888888854  56655443

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=87.04  E-value=0.39  Score=40.32  Aligned_cols=82  Identities=13%  Similarity=0.111  Sum_probs=48.2

Q ss_pred             CEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCcc--ccccCCHHHHhhcCCEEEE
Q 020301          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLREADVISL  242 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~aDiV~l  242 (328)
                      ++|.|.|. |.||+.+++.|. .-|.+|++.+|............ .......+.....  .....++.+.++.++.++.
T Consensus         4 ~KILVtGatG~iG~~l~~~L~-~~G~~V~~~~R~~~~~~~~~~~~-~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~   81 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASI-SLGHPTYVLFRPEVVSNIDKVQM-LLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS   81 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHH-HTTCCEEEECCSCCSSCHHHHHH-HHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHH-hCCCEEEEEECCCcccchhHHHH-HhhhccCCcEEEEeecccchhhhhhccCcchhhh
Confidence            46999994 999999999974 67999999988653211110000 0011112221111  1112345678889999988


Q ss_pred             cCCCChh
Q 020301          243 HPVLDKT  249 (328)
Q Consensus       243 ~~plt~~  249 (328)
                      +.+....
T Consensus        82 ~~~~~~~   88 (312)
T d1qyda_          82 ALAGGVL   88 (312)
T ss_dssp             CCCCSSS
T ss_pred             hhhhccc
Confidence            8775443

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=86.99  E-value=0.68  Score=38.75  Aligned_cols=38  Identities=32%  Similarity=0.316  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .|.||++-|-| -+-||+++|+.|+ .-|++|+..|++.+
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la-~~G~~V~~~~~~~~   40 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFA-REGALVALCDLRPE   40 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSTT
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            37899999999 5679999999985 78999999998764

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.88  E-value=0.41  Score=38.23  Aligned_cols=70  Identities=14%  Similarity=0.104  Sum_probs=42.8

Q ss_pred             CEEEEEe-cCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCc--cccccCCHHHHhhcCCEE
Q 020301          166 QTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVI  240 (328)
Q Consensus       166 ~tvgIiG-~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV  240 (328)
                      +||.|.| -|.||+.+++.|+ .-|  ..|+...|++..... .         ..+..-.  ......++.++++.+|.|
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll-~~g~~v~v~~~~R~~~~~~~-~---------~~~~~~~~~d~~~~~~~~~~~~~~d~v   72 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLK-EGSDKFVAKGLVRSAQGKEK-I---------GGEADVFIGDITDADSINPAFQGIDAL   72 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHH-HTTTTCEEEEEESCHHHHHH-T---------TCCTTEEECCTTSHHHHHHHHTTCSEE
T ss_pred             CEEEEECCccHHHHHHHHHHH-HCCCcEEEEEEcCCHHHHHh-c---------cCCcEEEEeeeccccccccccccceee
Confidence            5899999 6999999999985 445  567667776543211 0         0111100  011123456778999999


Q ss_pred             EEcCCC
Q 020301          241 SLHPVL  246 (328)
Q Consensus       241 ~l~~pl  246 (328)
                      +.+...
T Consensus        73 i~~a~~   78 (252)
T d2q46a1          73 VILTSA   78 (252)
T ss_dssp             EECCCC
T ss_pred             EEEEee
Confidence            877643

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=86.78  E-value=0.19  Score=40.11  Aligned_cols=112  Identities=18%  Similarity=0.201  Sum_probs=59.7

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~pl  246 (328)
                      +|||=|||+|||.+.|.+. .-+.+|.+.+.......-.+.=.|..   -+|..+         .++-...|.+.+    
T Consensus         2 kigINGfGRIGR~~~R~l~-~~~i~iv~INd~~~~~~~ayLl~yDS---~hG~~~---------~~v~~~~~~l~i----   64 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILH-SRGVEVALINDLTDNKTLAHLLKYDS---IYHRFP---------GEVAYDDQYLYV----   64 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSCHHHHHHHHHCCT---TTCSCS---------SCEEECSSEEEE----
T ss_pred             EEEEECCcHHHHHHHHHHh-cCCCEEEEECCCcchhhhhheeeccc---ccCccc---------cccccccceeEe----
Confidence            6999999999999999864 44677777654333222222212210   011100         112223455544    


Q ss_pred             ChhhhccccHHHHhcC---CCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEE
Q 020301          247 DKTTYHLINKERLATM---KKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (328)
Q Consensus       247 t~~t~~li~~~~~~~m---k~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaal  296 (328)
                      +.....++++...+.+   +-|.-+|==+.|.-.+.+.+..-|+.| ....-+
T Consensus        65 ~g~~I~~~~~~~p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g-akkVii  116 (168)
T d2g82a1          65 DGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGG-AKKVII  116 (168)
T ss_dssp             TTEEEEEECCSSGGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTT-CSEEEE
T ss_pred             cceeEEEEecCChHHCcccccCCceeEeccccccchHHhhhhhccc-cceeee
Confidence            2233333433323322   335555555678888888888888866 444444

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=86.48  E-value=0.25  Score=35.98  Aligned_cols=38  Identities=24%  Similarity=0.370  Sum_probs=30.8

Q ss_pred             ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCC
Q 020301          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~  198 (328)
                      +.+..||+|.|||.|..|..+|.-| .....++++..++
T Consensus        27 ~~~f~gK~VlVVG~g~Sa~dia~~l-~~~ak~v~~~~~r   64 (107)
T d2gv8a2          27 PELFVGESVLVVGGASSANDLVRHL-TPVAKHPIYQSLL   64 (107)
T ss_dssp             GGGGTTCCEEEECSSHHHHHHHHHH-TTTSCSSEEEECT
T ss_pred             hhhcCCCeEEEECCCCCHHHHHHHH-HHhcCEEEEEEec
Confidence            3578999999999999999999987 4677776655443

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=86.19  E-value=0.57  Score=38.06  Aligned_cols=65  Identities=12%  Similarity=0.136  Sum_probs=48.8

Q ss_pred             cCCHHHHhhcCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCccEEEEeCCCCC
Q 020301          227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE  302 (328)
Q Consensus       227 ~~~l~ell~~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDV~~~E  302 (328)
                      ..+.++++ +||+|+..-|.+        .+.++.||+|.++|-.-.  ......+.++|.+.++...++|.....
T Consensus        58 ~~~~~~~~-~~diilkv~~p~--------~~e~~~lk~~~~li~~l~--p~~~~ell~~l~~~~it~~s~E~ipr~  122 (193)
T d1pjca2          58 VPSAKDAW-SREMVVKVKEPL--------PAEYDLMQKDQLLFTYLH--LAAARELTEQLMRVGLTAIAYETVELP  122 (193)
T ss_dssp             ESSHHHHH-TSSEEECSSCCC--------GGGGGGCCTTCEEEECCC--GGGCHHHHHHHHHHTCEEEEGGGCCCT
T ss_pred             eecccccc-ccceEEEeccCC--------HHHHHhhhcCceEEEecC--cccchHHHHHHHHcCCEEEEeeecccc
Confidence            34666766 589987665533        356899999999998854  344568999999999999999877554

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=86.14  E-value=0.42  Score=39.74  Aligned_cols=33  Identities=21%  Similarity=0.450  Sum_probs=29.0

Q ss_pred             CEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       166 ~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      .+|.|.|. |-||+.+++.| +.-|.+|++.|+..
T Consensus         2 MKIlItGasGfiG~~l~~~L-~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQL-KGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHH-TTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCEEEEeechh
Confidence            46899997 99999999997 68899999999864

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=86.03  E-value=0.41  Score=41.63  Aligned_cols=35  Identities=17%  Similarity=0.245  Sum_probs=30.9

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .|+|.|||.|-.|..+|..|+ .-|.+|++++.+.+
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~-k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLA-EKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHH-hCCCCEEEEECCCC
Confidence            589999999999999999985 56999999998754

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.96  E-value=0.88  Score=41.22  Aligned_cols=105  Identities=15%  Similarity=0.173  Sum_probs=61.4

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHH--HHHHhhhhhhhhcCCCC----C----ccccccCCHHH
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRL--EKFVTAYGQFLKANGEQ----P----VTWKRASSMDE  232 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~----~----~~~~~~~~l~e  232 (328)
                      .|.++.=||+|. |+.+... ++.+|+ +|+|+|.++....  .+....+..+....+..    .    ..+......++
T Consensus       216 pgd~fLDLGCG~-G~~vl~a-A~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~  293 (406)
T d1u2za_         216 KGDTFMDLGSGV-GNCVVQA-ALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE  293 (406)
T ss_dssp             TTCEEEEESCTT-SHHHHHH-HHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH
T ss_pred             CCCEEEeCCCCC-cHHHHHH-HHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccccc
Confidence            467888899985 5555555 456776 8999999875321  11111111111111110    0    01111223567


Q ss_pred             HhhcCCEEEEcC-CCChhhhccccHHHHhcCCCCcEEEEc
Q 020301          233 VLREADVISLHP-VLDKTTYHLINKERLATMKKEAILVNC  271 (328)
Q Consensus       233 ll~~aDiV~l~~-plt~~t~~li~~~~~~~mk~ga~lIN~  271 (328)
                      .+..||+|.++. -..++..+.+ .+.+..||||+.||-.
T Consensus       294 ~~~~adVV~inn~~f~~~l~~~L-~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         294 LIPQCDVILVNNFLFDEDLNKKV-EKILQTAKVGCKIISL  332 (406)
T ss_dssp             HGGGCSEEEECCTTCCHHHHHHH-HHHHTTCCTTCEEEES
T ss_pred             ccccceEEEEecccCchHHHHHH-HHHHHhcCCCcEEEEe
Confidence            899999998753 2345555555 5788999999999864

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=85.55  E-value=0.5  Score=36.29  Aligned_cols=38  Identities=8%  Similarity=-0.004  Sum_probs=31.9

Q ss_pred             ccCCCEEEEE--ecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIi--G~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ...++.+-|+  |.|.||-++|..| ..+|++|.+..+...
T Consensus        36 ~~~~~~vvi~d~ggg~ig~e~A~~l-a~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          36 KKIGKRVVILNADTYFMAPSLAEKL-ATAGHEVTIVSGVHL   75 (156)
T ss_dssp             SCCCSEEEEEECCCSSHHHHHHHHH-HHTTCEEEEEESSCT
T ss_pred             cccCCceEEEecCCChHHHHHHHHH-HHcCCeEEEEecCCc
Confidence            4457777787  8899999999998 589999999988653

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.53  E-value=0.28  Score=41.92  Aligned_cols=37  Identities=16%  Similarity=0.234  Sum_probs=32.7

Q ss_pred             cCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          163 LKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       163 l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      |.||++-|-|.+. ||+++|+.|+ .-|++|+..|++.+
T Consensus         2 L~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~   39 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFA-KEGAQVTITGRNED   39 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            7899999999865 9999999985 78999999999864

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.49  E-value=0.74  Score=38.74  Aligned_cols=39  Identities=13%  Similarity=0.080  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       162 ~l~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      .|.||++-|.|. +-||+++|+.|+ .-|++|+..+|+.+.
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   41 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFA-REGAKVTITGRHAER   41 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            488999999886 579999999985 789999999998643

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.96  E-value=0.63  Score=40.27  Aligned_cols=38  Identities=32%  Similarity=0.373  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       162 ~l~g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .|.||++-|-|.+. ||+++|+.|+ .-|++|++.|+..+
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la-~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFA-ERGALVVVNDLGGD   42 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEECCCBC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCch
Confidence            58999999999876 9999999985 78999999987653

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=84.64  E-value=0.47  Score=39.85  Aligned_cols=35  Identities=37%  Similarity=0.353  Sum_probs=26.9

Q ss_pred             CEE-EEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchh
Q 020301          166 QTV-GVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (328)
Q Consensus       166 ~tv-gIiG~G-~IG~~vA~~l~~~fg~~V~~~d~~~~~  201 (328)
                      |+| -|-|.+ -||+++|+.|+ .-|++|+..+++.+.
T Consensus         1 KKValITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   37 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLV-KDGFAVAIADYNDAT   37 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            345 455654 59999999985 679999999998643

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.95  E-value=0.56  Score=35.48  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=29.4

Q ss_pred             CCEEEEEecCHHHHHHHHHHH---hcCCcEEEEEcCCch
Q 020301          165 GQTVGVIGAGRIGSAYARMMV---EGFKMNLIYYDLYQA  200 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~---~~fg~~V~~~d~~~~  200 (328)
                      ++++.|||-|.+|-++|..|+   +.+|.+|...++...
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            578999999999999997653   357999999887543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=83.93  E-value=0.6  Score=39.19  Aligned_cols=35  Identities=20%  Similarity=0.139  Sum_probs=28.8

Q ss_pred             CCEEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          165 GQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       165 g~tvgIiG~G~-IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ||.+-|-|.+. ||+++|+.|+ .-|++|+..+++.+
T Consensus         2 gKValITGas~GIG~aia~~la-~~Ga~V~i~~r~~~   37 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLG-KEGLRVFVCARGEE   37 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            67667777654 9999999985 77999999999764

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=83.25  E-value=0.31  Score=38.95  Aligned_cols=94  Identities=15%  Similarity=0.172  Sum_probs=55.3

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh--hcCCEE
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL--READVI  240 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--~~aDiV  240 (328)
                      .+.++.|.|. |.+|....+. ++.+|++|++..+++++.  ++....       |..........+..+.+  ...|.+
T Consensus        31 ~~~~vlV~gasGGVG~~aiQl-Ak~~Ga~Via~~~~~~k~--~~~~~l-------Gad~vi~~~~~~~~~~l~~~~~~~v  100 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVAL-LHKLGYQVVAVSGRESTH--EYLKSL-------GASRVLPRDEFAESRPLEKQVWAGA  100 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHH-HHHTTCCEEEEESCGGGH--HHHHHH-------TEEEEEEGGGSSSCCSSCCCCEEEE
T ss_pred             CCCcEEEEEccccchHHHHHH-HHHcCCCeEEEecchhHH--HHHHhh-------ccccccccccHHHHHHHHhhcCCee
Confidence            4446666654 9999999998 589999999998876542  111111       21111110001111111  224677


Q ss_pred             EEcCCCChhhhccccHHHHhcCCCCcEEEEcCC
Q 020301          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (328)
Q Consensus       241 ~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR  273 (328)
                      +-++-  .+    .-.+.++.|+++..+|+++.
T Consensus       101 vD~Vg--g~----~~~~~l~~l~~~Griv~~G~  127 (177)
T d1o89a2         101 IDTVG--DK----VLAKVLAQMNYGGCVAACGL  127 (177)
T ss_dssp             EESSC--HH----HHHHHHHTEEEEEEEEECCC
T ss_pred             EEEcc--hH----HHHHHHHHhccccceEeecc
Confidence            66654  22    23678888999999999865

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=83.23  E-value=0.44  Score=39.06  Aligned_cols=32  Identities=22%  Similarity=0.306  Sum_probs=28.4

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      +|.|||-|..|...|..| +..|.+|++++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L-~~~G~~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHL-RSRGTDAVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHH-HTTTCCEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHH-HhCCCCEEEEecCC
Confidence            699999999999999998 46799999998753

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=83.16  E-value=0.56  Score=40.52  Aligned_cols=37  Identities=22%  Similarity=0.266  Sum_probs=32.6

Q ss_pred             cCCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       163 l~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .+||+|.|.| .|-||+.+++.| ...|.+|+++|+...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~L-l~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWL-QTMGATVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCCC
Confidence            4689999999 789999999998 577999999998764

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.80  E-value=0.51  Score=38.73  Aligned_cols=78  Identities=13%  Similarity=0.147  Sum_probs=48.3

Q ss_pred             ccCCCEEEEEe-cCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHhhcCC
Q 020301          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (328)
Q Consensus       162 ~l~g~tvgIiG-~G~IG~~vA~~l~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (328)
                      .+.+++|.|.| .|-||+.+++.|.+ -|  -+|++.+|++..........    .   ...........++.+.++.+|
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~-~g~~~~v~~~~R~~~~~~~~~~~~----i---~~~~~D~~~~~~~~~~~~~~d   82 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILE-QGLFSKVTLIGRRKLTFDEEAYKN----V---NQEVVDFEKLDDYASAFQGHD   82 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHH-HTCCSEEEEEESSCCCCCSGGGGG----C---EEEECCGGGGGGGGGGGSSCS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHh-CCCCCEEEEEecChhhhcccccce----e---eeeeecccccccccccccccc
Confidence            36788999998 69999999998753 34  48999998654321111000    0   000001122346677789999


Q ss_pred             EEEEcCCCC
Q 020301          239 VISLHPVLD  247 (328)
Q Consensus       239 iV~l~~plt  247 (328)
                      +++.++..+
T Consensus        83 ~vi~~~~~~   91 (232)
T d2bkaa1          83 VGFCCLGTT   91 (232)
T ss_dssp             EEEECCCCC
T ss_pred             ccccccccc
Confidence            998877543

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=82.35  E-value=0.33  Score=36.57  Aligned_cols=34  Identities=29%  Similarity=0.392  Sum_probs=25.7

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEE-cCCch
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQA  200 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~-d~~~~  200 (328)
                      ++.|+|.|.+|+.+++.+...-|+++.++ |..+.
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~   39 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPE   39 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTT
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchH
Confidence            69999999999999986533457887755 65543

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=82.29  E-value=0.69  Score=39.99  Aligned_cols=34  Identities=18%  Similarity=0.314  Sum_probs=28.4

Q ss_pred             CEEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCc
Q 020301          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQ  199 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~-~fg~~V~~~d~~~  199 (328)
                      |+|+|||.|..|-.+|..|++ +.+.+|.++++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            689999999999999987642 3457999999875

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.23  E-value=0.64  Score=38.43  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=30.9

Q ss_pred             CCCEEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       164 ~g~tvgIiG~-G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .||++-|.|. |.||+++|+.| ..-|++|...|+...
T Consensus         1 egK~vlITGas~GIG~a~a~~l-~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAF-RARNWWVASIDVVEN   37 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence            4899999998 55999999998 478999999988654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=82.22  E-value=0.38  Score=37.44  Aligned_cols=31  Identities=16%  Similarity=0.096  Sum_probs=25.1

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEE
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY  195 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~  195 (328)
                      .+++|.|||-|.+|-++|..| +.+|.++.++
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l-~~~g~~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGL-RASGWEGNIR   32 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHH-HHTTCCSEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHH-HHcCCceEEE
Confidence            367899999999999999997 5777664443

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=81.78  E-value=0.4  Score=37.96  Aligned_cols=35  Identities=14%  Similarity=0.181  Sum_probs=30.1

Q ss_pred             CCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       164 ~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      +++.|.|||-|..|.+.|..+ ..+|++|+.+++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~-ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYA-ARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHH-HTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHH-HHcCCceEEEEeec
Confidence            456899999999999999886 58999999998653

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.62  E-value=0.79  Score=37.87  Aligned_cols=34  Identities=29%  Similarity=0.436  Sum_probs=29.4

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      -++|.|||.|.-|-..|..| +..|.+|+++..+.
T Consensus         5 ~~kViVIGaG~aGL~aA~~L-~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQL-QSFGMDVTLLEARD   38 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHH-HhCCCCEEEEeCCC
Confidence            35699999999999999998 46799999998654

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.14  E-value=0.87  Score=36.16  Aligned_cols=121  Identities=16%  Similarity=0.078  Sum_probs=70.4

Q ss_pred             ccCCCEEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcCCCCCccccccCCHHHHh-----h
Q 020301          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----R  235 (328)
Q Consensus       162 ~l~g~tvgIiG-~G~IG~~vA~~l~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~  235 (328)
                      .-.|.+|.|.| -|.+|....+. ++.+|++|++..++.++.  ++       ++..|....-. +....++..     .
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQl-ak~~Ga~Viat~~s~~k~--~~-------~~~lGa~~vi~-~~~~~~~~~~~~~~~   97 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSM-LAKRGYTVEASTGKAAEH--DY-------LRVLGAKEVLA-REDVMAERIRPLDKQ   97 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHH-HHHTTCCEEEEESCTTCH--HH-------HHHTTCSEEEE-CC---------CCSC
T ss_pred             CCCCCEEEEEeccchHHHHHHHH-HHHcCCceEEecCchHHH--HH-------HHhcccceeee-cchhHHHHHHHhhcc
Confidence            34588999999 59999999998 589999999998776542  11       22223322211 111222222     2


Q ss_pred             cCCEEEEcCCCChhhhccccHHHHhcCCCCcEEEEcCC-CcccCHHHHHHHHHcCCccEEEEeCCC
Q 020301          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR-GPVIDEVALVEHLKQNPMFRVGLDVFE  300 (328)
Q Consensus       236 ~aDiV~l~~plt~~t~~li~~~~~~~mk~ga~lIN~aR-G~~vde~aL~~aL~~g~i~gaalDV~~  300 (328)
                      ..|+|+-++..      -.-...++.|+++..++.++- ++....-.+...+.+ ++.-.++|.+.
T Consensus        98 gvD~vid~vgg------~~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k-~~~i~Gv~~~~  156 (176)
T d1xa0a2          98 RWAAAVDPVGG------RTLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILR-GVSLLGIDSVY  156 (176)
T ss_dssp             CEEEEEECSTT------TTHHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHT-TCEEEECCSSS
T ss_pred             CcCEEEEcCCc------hhHHHHHHHhCCCceEEEeecccCcccCCCHHHHHHC-CcEEEEEeCCc
Confidence            46788777652      134678889999999998863 333322333333333 35555566543

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=80.88  E-value=0.98  Score=38.12  Aligned_cols=33  Identities=21%  Similarity=0.214  Sum_probs=24.5

Q ss_pred             cCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       163 l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      ..|++|++||+-.    ..+++ +.-|++++++|+++.
T Consensus       120 ~~g~kV~vIG~~P----~v~~l-~~~~~~~~VlE~~p~  152 (251)
T d2h1qa1         120 VKGKKVGVVGHFP----HLESL-LEPICDLSILEWSPE  152 (251)
T ss_dssp             TTTSEEEEESCCT----THHHH-HTTTSEEEEEESSCC
T ss_pred             cCCCEEEEEecch----hHHHH-HhcCCcEEEEeCCCC
Confidence            4799999998853    33443 466889999998864

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=80.49  E-value=0.59  Score=37.08  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=27.5

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCc
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~-~V~~~d~~~  199 (328)
                      +|.|||.|..|...|..|+ ..|. +|.+++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~-~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLS-EAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHH-HTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHH-hCCCCcEEEEECCC
Confidence            4899999999999999984 6797 699998764

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.46  E-value=0.47  Score=39.86  Aligned_cols=33  Identities=18%  Similarity=0.344  Sum_probs=29.6

Q ss_pred             EEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       167 tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      .|.|||.|..|..+|..| +..|.+|.++++.+.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L-~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLL-HKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHH-HHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHH-HHCCCCEEEEeCCCC
Confidence            499999999999999998 577999999998764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.44  E-value=0.58  Score=34.33  Aligned_cols=34  Identities=15%  Similarity=0.236  Sum_probs=26.8

Q ss_pred             CCEEEEEecCHHHHHHHHHHHhcC---CcEEEEEcCCc
Q 020301          165 GQTVGVIGAGRIGSAYARMMVEGF---KMNLIYYDLYQ  199 (328)
Q Consensus       165 g~tvgIiG~G~IG~~vA~~l~~~f---g~~V~~~d~~~  199 (328)
                      .+++.|||.|.+|-++|..+ ..+   |.+|..+++..
T Consensus        20 p~~v~ivGgG~ig~E~A~~l-~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIF-NAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHH-HHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECCcHHHHHHHHHh-hhcccCCcEEEEEeccc
Confidence            47899999999999999765 444   45788887654

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=80.40  E-value=1.4  Score=32.80  Aligned_cols=40  Identities=20%  Similarity=0.277  Sum_probs=34.7

Q ss_pred             ccccCCCEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 020301          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (328)
Q Consensus       160 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~~  200 (328)
                      +...+||+|.|||.|..+-.-|..| ..+.-+|+.+-|+..
T Consensus        22 ~~~~~~k~V~VvGgGdsA~e~A~~L-~~~a~~V~li~r~~~   61 (126)
T d1trba2          22 GFFYRNQKVAVIGGGNTAVEEALYL-SNIASEVHLIHRRDG   61 (126)
T ss_dssp             GGGGTTSEEEEECSSHHHHHHHHHH-TTTSSEEEEECSSSS
T ss_pred             hHHhCCCEEEEECCCHHHHHHHHHH-hhcCCcEEEEeeccc
Confidence            4456899999999999999999997 689999999987653

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.01  E-value=1.1  Score=34.26  Aligned_cols=32  Identities=19%  Similarity=0.238  Sum_probs=26.6

Q ss_pred             CEEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 020301          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (328)
Q Consensus       166 ~tvgIiG~G~IG~~vA~~l~~~fg~~V~~~d~~~  199 (328)
                      .+|.|||.|.+|-++|..|+ . +.+|..+++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~-~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLS-Q-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-T-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHH-c-CCCEEEEeccc
Confidence            47999999999999999873 3 67899888753