Citrus Sinensis ID: 020307
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 328 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WPT7 | 352 | Uncharacterized methyltra | yes | no | 0.902 | 0.840 | 0.681 | 1e-121 | |
| Q8LBV4 | 355 | Uncharacterized methyltra | no | no | 0.847 | 0.783 | 0.517 | 9e-78 | |
| Q24W96 | 253 | Demethylmenaquinone methy | yes | no | 0.512 | 0.664 | 0.241 | 7e-10 | |
| B9DNV5 | 241 | Demethylmenaquinone methy | yes | no | 0.368 | 0.502 | 0.313 | 8e-10 | |
| Q4L6H3 | 239 | Demethylmenaquinone methy | yes | no | 0.368 | 0.506 | 0.291 | 6e-09 | |
| O66128 | 246 | Demethylmenaquinone methy | yes | no | 0.307 | 0.410 | 0.317 | 8e-09 | |
| Q6GGU0 | 241 | Demethylmenaquinone methy | yes | no | 0.307 | 0.419 | 0.336 | 2e-08 | |
| Q2YY85 | 241 | Demethylmenaquinone methy | yes | no | 0.307 | 0.419 | 0.336 | 3e-08 | |
| P67063 | 241 | Demethylmenaquinone methy | yes | no | 0.307 | 0.419 | 0.336 | 3e-08 | |
| A8Z450 | 241 | Demethylmenaquinone methy | yes | no | 0.307 | 0.419 | 0.336 | 3e-08 |
| >sp|Q0WPT7|Y2104_ARATH Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana GN=At2g41040 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 434 bits (1115), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/305 (68%), Positives = 245/305 (80%), Gaps = 9/305 (2%)
Query: 33 RFSSTIRAVTLQPAKSERNQTLELEGD---LFSCPICYEPLIRKGPTGLTLGAIYRSGFK 89
RF S + + +N+T ++E + +F+CP+CYEPL+RKGP+G+ L AIYRSGFK
Sbjct: 48 RFPSAAISAVAPKSDINKNETPKIEIEETQVFACPVCYEPLMRKGPSGINLQAIYRSGFK 107
Query: 90 CRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFP 149
C +C+KTYSSKD YLDLTV + L DY EVKP +TELFRSP VSFLYERGWRQ F RSGFP
Sbjct: 108 CGQCNKTYSSKDEYLDLTVTADLDDYNEVKPITTELFRSPLVSFLYERGWRQAFKRSGFP 167
Query: 150 GPDEE-----EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 204
GPDEE EYFK A+GGLLVDVSCGSGLFSRKFA+SG YSGV+ALD+SENMLRQC +F
Sbjct: 168 GPDEEFRMAEEYFKEAEGGLLVDVSCGSGLFSRKFAQSGKYSGVIALDYSENMLRQCKEF 227
Query: 205 IKQDNTILTS-NLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 263
IK DNT S N+A+VRADV RLPF SG VDAVHAGAALHCWPSP+NA+AEI R+LRSGG
Sbjct: 228 IKNDNTFDNSTNIAVVRADVSRLPFPSGSVDAVHAGAALHCWPSPTNAIAEICRVLRSGG 287
Query: 264 VFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMF 323
VFVGTTFLRY+ ST R + RILQ+YNYL ++EI+D+CTSCGLT+Y +Q SFIMF
Sbjct: 288 VFVGTTFLRYSPSTPWIIRPFQSRILQSYNYLMQDEIKDVCTSCGLTDYEDYIQDSFIMF 347
Query: 324 AAQKP 328
A+KP
Sbjct: 348 TARKP 352
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8LBV4|Y1814_ARATH Uncharacterized methyltransferase At1g78140, chloroplastic OS=Arabidopsis thaliana GN=At1g78140 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (743), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 152/294 (51%), Positives = 193/294 (65%), Gaps = 16/294 (5%)
Query: 47 KSERNQTLELEGDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLD 105
K ++N+ E + +CPICY L P GL A +C C ++YS + +LD
Sbjct: 65 KKDKNRG---EKKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLD 121
Query: 106 LTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEE-----EYFKSA 160
L V SG K Y+E P STELFR+P VSFLYERGWRQNF GFPGP++E Y K
Sbjct: 122 LAVASGSKRYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPV 181
Query: 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI-KQDNTILTSNLALV 219
GG ++D SCGSG+FSR F +S +S V+ALD+SENMLRQCY+ + K++N L LV
Sbjct: 182 LGGNIIDASCGSGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLV 241
Query: 220 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL 279
RAD+ RLPF SG VDAVHAGAALHCWPSPS+AVAEISR+LR GGVFV TTF+ Y S
Sbjct: 242 RADIARLPFLSGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFI-YDGPFSF 300
Query: 280 TG--RVLRERILQ---NYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQKP 328
+ LR+ I++ ++ +L E E+ED+C +CGL N+T FIM +A KP
Sbjct: 301 IPFLKNLRQEIMRYSGSHIFLNERELEDICKACGLVNFTRVRNGPFIMLSATKP 354
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q24W96|UBIE_DESHY Demethylmenaquinone methyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 35/203 (17%)
Query: 130 FVSFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGV 188
+SF ++GWR+ ++ ++ G +VD+ CG+ S + A + G +
Sbjct: 43 LMSFGLDKGWRKKAVQT----------VEAKPGMTMVDICCGTAQLSLELAMTVGEQGQI 92
Query: 189 VALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP 248
LDFSENML++ + + + S + L + D LPFA D G L P
Sbjct: 93 TGLDFSENMLKKAQENLA--GSPYRSIIELRQGDAMNLPFADNSFDGATVGWGLRNLPDL 150
Query: 249 SNAVAEISRILRSGGVFVGTT-------------FLRYTSSTSLTGRVLRERILQNYNYL 295
V E+ R+++ GG+ V +L + L G++ + + Y YL
Sbjct: 151 EKGVQEMIRVVKPGGMVVSLDMAKPTMPGFKQGYWLYFNKLVPLMGKIWAGKA-KAYQYL 209
Query: 296 --------TEEEIEDLCTSCGLT 310
+++E+ ++ CGLT
Sbjct: 210 HDSAVEFPSQQELANIFARCGLT 232
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Desulfitobacterium hafniense (strain Y51) (taxid: 138119) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|B9DNV5|UBIE_STACT Demethylmenaquinone methyltransferase OS=Staphylococcus carnosus (strain TM300) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 16/137 (11%)
Query: 131 VSFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VV 189
+SF + WR+ +S + +G +DV CG+ ++ +K+ SG V+
Sbjct: 29 ISFEQHKVWRKRVMKS----------MQVKKGSKALDVCCGTADWTIALSKAVGPSGEVI 78
Query: 190 ALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS 249
LDFSENML+ + ++ T SN+ LV+ D LPF D V G L P
Sbjct: 79 GLDFSENMLK-----VGEEKTKNMSNIQLVQGDAMDLPFDDNEFDYVTIGFGLRNIPDYV 133
Query: 250 NAVAEISRILRSGGVFV 266
A+ E++R+L+ GG+ V
Sbjct: 134 IALKEMNRVLKPGGMAV 150
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Staphylococcus carnosus (strain TM300) (taxid: 396513) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q4L6H3|UBIE_STAHJ Demethylmenaquinone methyltransferase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 16/137 (11%)
Query: 131 VSFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVV 189
+SF + WR++ + G +DV CG+ ++ +K+ G + V
Sbjct: 29 ISFEQHKVWRKHVMKD----------MHVKVGSKALDVCCGTADWTIALSKAVGAHGEVT 78
Query: 190 ALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS 249
LDFSENML + ++ T +N+ LV D LPF D V G L P
Sbjct: 79 GLDFSENMLE-----VGKEKTKHMNNIHLVHGDAMNLPFEDNSFDYVTIGFGLRNVPDYL 133
Query: 250 NAVAEISRILRSGGVFV 266
A+ E++R+L+ GG+ V
Sbjct: 134 VALKEMNRVLKPGGMIV 150
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Staphylococcus haemolyticus (strain JCSC1435) (taxid: 279808) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|O66128|UBIE_MICLU Demethylmenaquinone methyltransferase OS=Micrococcus luteus GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 219
+G +DV CG+G ++ + A++ G V+ LDFSENML + Q T N+ L+
Sbjct: 58 KGSKALDVCCGTGDWTIQMAQAVGKNGHVIGLDFSENMLS-----VAQGKTNHIQNIELI 112
Query: 220 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 266
+ LPF D G L P + E+ R+L+ GG+ V
Sbjct: 113 HGNAMELPFEDNIFDYTTIGFGLRNLPDYKKGLEEMYRVLKPGGMIV 159
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Micrococcus luteus (taxid: 1270) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q6GGU0|UBIE_STAAR Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain MRSA252) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 219
+G +DV CG+G ++ +K+ G+ V +DFSENML + ++ T N+ LV
Sbjct: 49 KGMKALDVCCGTGDWTIALSKAVGSTGEVTGIDFSENMLE-----VGKEKTASMENVKLV 103
Query: 220 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 266
D LPF D V G L P A+ E++R+L+ GG+ V
Sbjct: 104 HGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMVV 150
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Staphylococcus aureus (strain MRSA252) (taxid: 282458) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q2YY85|UBIE_STAAB Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 219
+G +DV CG+G ++ +K+ G V +DFSENML + ++ T N+ LV
Sbjct: 49 KGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-----VGKEKTASMENVKLV 103
Query: 220 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 266
D LPF D V G L P A+ E++R+L+ GG+ V
Sbjct: 104 HGDAMELPFGDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMVV 150
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Staphylococcus aureus (strain bovine RF122 / ET3-1) (taxid: 273036) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|P67063|UBIE_STAAW Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain MW2) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 219
+G +DV CG+G ++ +K+ G V +DFSENML + ++ T N+ LV
Sbjct: 49 KGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-----VGKEKTASMENVKLV 103
Query: 220 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 266
D LPF D V G L P A+ E++R+L+ GG+ V
Sbjct: 104 HGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMVV 150
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Staphylococcus aureus (strain MW2) (taxid: 196620) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|A8Z450|UBIE_STAAT Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 219
+G +DV CG+G ++ +K+ G V +DFSENML + ++ T N+ LV
Sbjct: 49 KGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-----VGKEKTASMENVKLV 103
Query: 220 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 266
D LPF D V G L P A+ E++R+L+ GG+ V
Sbjct: 104 HGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMVV 150
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Staphylococcus aureus (strain USA300 / TCH1516) (taxid: 451516) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 328 | ||||||
| 363814481 | 341 | uncharacterized protein LOC100798970 [Gl | 0.957 | 0.920 | 0.718 | 1e-131 | |
| 224120260 | 308 | predicted protein [Populus trichocarpa] | 0.865 | 0.922 | 0.780 | 1e-131 | |
| 356556565 | 341 | PREDICTED: uncharacterized methyltransfe | 0.957 | 0.920 | 0.712 | 1e-131 | |
| 224142467 | 332 | predicted protein [Populus trichocarpa] | 0.966 | 0.954 | 0.685 | 1e-130 | |
| 217072446 | 342 | unknown [Medicago truncatula] | 0.957 | 0.918 | 0.717 | 1e-130 | |
| 255581285 | 290 | phosphatidylethanolamine n-methyltransfe | 0.847 | 0.958 | 0.780 | 1e-129 | |
| 388516609 | 342 | unknown [Medicago truncatula] | 0.957 | 0.918 | 0.714 | 1e-129 | |
| 225463049 | 343 | PREDICTED: uncharacterized methyltransfe | 0.984 | 0.941 | 0.706 | 1e-129 | |
| 225463051 | 340 | PREDICTED: uncharacterized methyltransfe | 0.987 | 0.952 | 0.7 | 1e-127 | |
| 296084557 | 338 | unnamed protein product [Vitis vinifera] | 0.978 | 0.949 | 0.703 | 1e-126 |
| >gi|363814481|ref|NP_001242875.1| uncharacterized protein LOC100798970 [Glycine max] gi|255636913|gb|ACU18789.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/323 (71%), Positives = 268/323 (82%), Gaps = 9/323 (2%)
Query: 15 FPKYPCLSRNSPRLPQSLRFSS--TIRAVTLQPAKSE--RNQTLELEGDLFSCPICYEPL 70
F K P LS S P+ LR S TIRA++ A+SE Q +E D+F+CP+CYEPL
Sbjct: 19 FSKCPRLSSKSHFRPRLLRSISQRTIRAISAVAAESELGTQQDHAIEADIFACPVCYEPL 78
Query: 71 IRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPF 130
IRKGP+GL L AIYRSGF C++C KTYSSKD YLDLTV +GL+DYTE++PA TELFRSP
Sbjct: 79 IRKGPSGLNLPAIYRSGFMCKRCKKTYSSKDRYLDLTVTAGLRDYTEIQPARTELFRSPL 138
Query: 131 VSFLYERGWRQNFNRSGFPGPDEE-----EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY 185
VSFL+ERGWRQNF +SGFPGPDEE EYF+SA+GGLLVDVSCGSGLFSRKFAKSGTY
Sbjct: 139 VSFLHERGWRQNFRQSGFPGPDEEFKMAQEYFESAEGGLLVDVSCGSGLFSRKFAKSGTY 198
Query: 186 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW 245
SGV+ALDFSENMLRQCYDFI++D+ + T+N+ALVRADV RLPF+SG VDAVHAGAALHCW
Sbjct: 199 SGVIALDFSENMLRQCYDFIEKDDALSTNNIALVRADVSRLPFSSGSVDAVHAGAALHCW 258
Query: 246 PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCT 305
PSPSNAVAEI+R L++GGVFVG+TFLRY+S T R RER Q Y YLTEEEI+DLCT
Sbjct: 259 PSPSNAVAEITRTLKNGGVFVGSTFLRYSSKTPWFLRPFRERTPQGYGYLTEEEIKDLCT 318
Query: 306 SCGLTNYTSKVQQSFIMFAAQKP 328
SCGLTNY+SK+QQ+FIMF AQKP
Sbjct: 319 SCGLTNYSSKIQQAFIMFTAQKP 341
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120260|ref|XP_002331004.1| predicted protein [Populus trichocarpa] gi|222872934|gb|EEF10065.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/291 (78%), Positives = 252/291 (86%), Gaps = 7/291 (2%)
Query: 43 LQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102
Q ++++QTLE+ D F+CPICY+PLIRKGP G L AIYRSGFKC +C+KTYSSK+N
Sbjct: 20 FQELSTQQSQTLEV--DPFACPICYQPLIRKGPKGFNLPAIYRSGFKCNRCNKTYSSKEN 77
Query: 103 YLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEE-----EYF 157
YLDLT+ +G+KDYTEVKP TELFRSP VSFLYERGWRQNFN+SGFPGPDEE EYF
Sbjct: 78 YLDLTITAGMKDYTEVKPVRTELFRSPLVSFLYERGWRQNFNQSGFPGPDEEFKMAQEYF 137
Query: 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA 217
K +GGLLVDVSCGSGLFSRKFAKSGTYS V+ALDFSENMLRQCYDFIKQD+TI T NLA
Sbjct: 138 KPTEGGLLVDVSCGSGLFSRKFAKSGTYSKVIALDFSENMLRQCYDFIKQDDTISTRNLA 197
Query: 218 LVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST 277
LVRADV RLPFASG VDA+HAGAALHCWPS SNAVAEI R LRSGGVFVGTTFL+Y+S+T
Sbjct: 198 LVRADVSRLPFASGSVDAIHAGAALHCWPSASNAVAEICRALRSGGVFVGTTFLQYSSTT 257
Query: 278 SLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQKP 328
S R RERI+QNYNY TEEEIEDLCT+CGLTNYT VQ+SFIMF+AQKP
Sbjct: 258 SWIERPFRERIMQNYNYFTEEEIEDLCTTCGLTNYTRIVQRSFIMFSAQKP 308
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556565|ref|XP_003546595.1| PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/323 (71%), Positives = 267/323 (82%), Gaps = 9/323 (2%)
Query: 15 FPKYPCLSRNSPRLPQSLR--FSSTIRAVTLQPAKSE--RNQTLELEGDLFSCPICYEPL 70
F + P LS S P+ R S IRA++ A+SE Q +E D+F+CP+CYEPL
Sbjct: 19 FLRCPRLSSKSQFHPRRFRSQTQSIIRAISAVAAESELGTQQDQAIEADIFACPVCYEPL 78
Query: 71 IRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPF 130
IRKGP+GL L AIYRSGF C++C K+YSSKD YLDLTV +GL+DYTE++PA TELFRSP
Sbjct: 79 IRKGPSGLNLPAIYRSGFMCKRCKKSYSSKDRYLDLTVTAGLRDYTEIQPARTELFRSPL 138
Query: 131 VSFLYERGWRQNFNRSGFPGPDEE-----EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY 185
VSFLYERGWRQNF +SGFPGPDEE EYF+SA+GGL+VDVSCGSGLFSRKFAKSG Y
Sbjct: 139 VSFLYERGWRQNFRQSGFPGPDEEFKMAQEYFESAKGGLIVDVSCGSGLFSRKFAKSGAY 198
Query: 186 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW 245
SGV+ALDFSENMLRQCY+FIK+D+T+ T+N+ALVRADV RLPF SG VDAVHAGAALHCW
Sbjct: 199 SGVIALDFSENMLRQCYEFIKKDDTLSTTNIALVRADVSRLPFPSGSVDAVHAGAALHCW 258
Query: 246 PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCT 305
PSPSNAVAEI+R+L+SGGVFVG+TFLRY+S T R RERI Q Y YLTEEEI+DLCT
Sbjct: 259 PSPSNAVAEITRVLKSGGVFVGSTFLRYSSLTPWFLRPFRERIPQGYGYLTEEEIKDLCT 318
Query: 306 SCGLTNYTSKVQQSFIMFAAQKP 328
SCGLTNY+SK+QQ+FIMF AQKP
Sbjct: 319 SCGLTNYSSKIQQAFIMFTAQKP 341
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142467|ref|XP_002324579.1| predicted protein [Populus trichocarpa] gi|222866013|gb|EEF03144.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust.
Identities = 235/343 (68%), Positives = 270/343 (78%), Gaps = 26/343 (7%)
Query: 1 MAIAAAAASS--SSSLFPKYPCLSRNSPRLPQ-----SLRFSSTIRA---VTLQPAKSER 50
MA+A+ A S+ KYP LS S P SLRF STIRA V L+P ++
Sbjct: 1 MAMASNALHHPLHQSISLKYPHLSHISRFSPSCLRFTSLRFPSTIRATSAVALEPNQA-- 58
Query: 51 NQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110
+F+CP+CYEPLIRKGP G L AIYRS FKC+KC KTYSSKDNYLDLT+ +
Sbjct: 59 ---------IFACPVCYEPLIRKGPPGFNLPAIYRSSFKCKKCTKTYSSKDNYLDLTITA 109
Query: 111 GLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEE-----EYFKSAQGGLL 165
G+KDYTE+ P TELFRSP VSFLYERGWRQ+FN+SGFPGPDEE EYFK A+GGLL
Sbjct: 110 GMKDYTEINPVRTELFRSPLVSFLYERGWRQSFNQSGFPGPDEEFEMAQEYFKPARGGLL 169
Query: 166 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 225
VDVSCGSGLFSRKFAKSG YS V+ALDFSENMLRQCYD+IKQD+TI T+NL L+RADV R
Sbjct: 170 VDVSCGSGLFSRKFAKSGAYSKVIALDFSENMLRQCYDYIKQDDTISTTNLGLIRADVSR 229
Query: 226 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR 285
LPFASG VDAVHAGAA+HCWPSPSNAV+EI R+LRSGGVFVGTTFLRY+S+T + R
Sbjct: 230 LPFASGSVDAVHAGAAMHCWPSPSNAVSEICRVLRSGGVFVGTTFLRYSSTTPRIEQPFR 289
Query: 286 ERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQKP 328
ERI +N N+ TEEEIEDLC++CGLTNY+ KVQQ+FIMF+AQKP
Sbjct: 290 ERISRNSNFFTEEEIEDLCSTCGLTNYSKKVQQTFIMFSAQKP 332
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217072446|gb|ACJ84583.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/326 (71%), Positives = 262/326 (80%), Gaps = 12/326 (3%)
Query: 15 FPKYPCL---SRNSPRL--PQSLRFS--STIRAVTLQPAKSERNQTLELEGDLFSCPICY 67
FPK P L S PRL Q+ RF+ +T V P + + DLF+CPICY
Sbjct: 17 FPKCPHLFTKSHFHPRLLRSQTQRFNIRATSAVVVDSPLDLSTKKDQGTQVDLFACPICY 76
Query: 68 EPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFR 127
EPLIRKGP GL L AIYRSGFKC++C K+Y+SKD YLDLTV SGL+DY EV+P TELFR
Sbjct: 77 EPLIRKGPIGLNLPAIYRSGFKCKRCQKSYTSKDGYLDLTVTSGLRDYVEVQPNRTELFR 136
Query: 128 SPFVSFLYERGWRQNFNRSGFPGPDEE-----EYFKSAQGGLLVDVSCGSGLFSRKFAKS 182
SP VSFLYERGWRQNF +SGFPGPDEE EYF+ A+GG +VDVSCGSGLFSRKFAKS
Sbjct: 137 SPLVSFLYERGWRQNFRQSGFPGPDEEFRMAQEYFEPAKGGRIVDVSCGSGLFSRKFAKS 196
Query: 183 GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 242
GTYSGV+ALDFSENMLRQCYDFIK+D+T+ T+NLALVRADV RLPF SG VDAVHAGAAL
Sbjct: 197 GTYSGVIALDFSENMLRQCYDFIKKDDTLSTTNLALVRADVSRLPFESGSVDAVHAGAAL 256
Query: 243 HCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIED 302
HCWPSPSNAVAEI+R+LRSGGVFVGTTFLRYTSSTS R+ RER Y YLTEEEI+D
Sbjct: 257 HCWPSPSNAVAEITRVLRSGGVFVGTTFLRYTSSTSWVARLFRERSSLGYGYLTEEEIKD 316
Query: 303 LCTSCGLTNYTSKVQQSFIMFAAQKP 328
LCTSCGLTNY+ K+Q+SFIMF AQKP
Sbjct: 317 LCTSCGLTNYSCKIQKSFIMFTAQKP 342
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255581285|ref|XP_002531454.1| phosphatidylethanolamine n-methyltransferase, putative [Ricinus communis] gi|223528947|gb|EEF30941.1| phosphatidylethanolamine n-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/283 (78%), Positives = 243/283 (85%), Gaps = 5/283 (1%)
Query: 51 NQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110
QT E D+F+CP+CYEPLIRKGP G L AIYRSGFKC+KC+KTYSSKDNYLDLT+ +
Sbjct: 6 QQTQTFEDDVFACPVCYEPLIRKGPPGFNLSAIYRSGFKCKKCNKTYSSKDNYLDLTITA 65
Query: 111 GLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEE-----EYFKSAQGGLL 165
+K+YTEVKPA TELFRSP VSFLYERGWRQNFN+SGFPGPDEE EYFK A+GG+L
Sbjct: 66 SMKEYTEVKPARTELFRSPLVSFLYERGWRQNFNQSGFPGPDEEFKMAQEYFKPAEGGIL 125
Query: 166 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 225
VDVSCGSGLFSRKFA SGTYS VVALDFSENMLRQCYDFIKQD+ I +LALVRADV R
Sbjct: 126 VDVSCGSGLFSRKFATSGTYSKVVALDFSENMLRQCYDFIKQDDNISEKDLALVRADVSR 185
Query: 226 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR 285
LPF+SG VDAVHAGAALHCWPSPSNA+AEI R LRSGGVFVGTTFLRY +++S R R
Sbjct: 186 LPFSSGSVDAVHAGAALHCWPSPSNAIAEICRTLRSGGVFVGTTFLRYNATSSWIERSFR 245
Query: 286 ERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQKP 328
ERI+ YNY TEEEIEDLCTSCGLTNY SKVQ+SFIMF A+KP
Sbjct: 246 ERIMSGYNYYTEEEIEDLCTSCGLTNYQSKVQRSFIMFTAEKP 288
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388516609|gb|AFK46366.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 233/326 (71%), Positives = 261/326 (80%), Gaps = 12/326 (3%)
Query: 15 FPKYPCL---SRNSPRL--PQSLRFS--STIRAVTLQPAKSERNQTLELEGDLFSCPICY 67
FPK P L S PRL Q+ RF+ +T V P + + DLF+CPICY
Sbjct: 17 FPKCPHLFTKSHFHPRLLRSQTQRFNIRATSAVVVDSPLDLSTKKDQGTQVDLFACPICY 76
Query: 68 EPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFR 127
EPLIRKGP GL L AIYRSGFKC++C K+Y+SKD YLDLTV SGL+DY EV+P TELFR
Sbjct: 77 EPLIRKGPIGLNLPAIYRSGFKCKRCQKSYTSKDGYLDLTVTSGLRDYVEVQPNRTELFR 136
Query: 128 SPFVSFLYERGWRQNFNRSGFPGPDEE-----EYFKSAQGGLLVDVSCGSGLFSRKFAKS 182
SP VSFLYERGWRQNF +SGFPGPDEE EYF+ A+GG +VDVSCGSGLFSRKFAKS
Sbjct: 137 SPLVSFLYERGWRQNFRQSGFPGPDEEFRMAQEYFEPAKGGRIVDVSCGSGLFSRKFAKS 196
Query: 183 GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 242
GTYSGV+ALDFSENMLRQCYDFIK+D+T+ T+NLALVRADV RLPF SG VDAVHAGAAL
Sbjct: 197 GTYSGVIALDFSENMLRQCYDFIKKDDTLSTTNLALVRADVSRLPFESGSVDAVHAGAAL 256
Query: 243 HCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIED 302
HCWPSPSNAVAEI+R+LRSGGVFVGTTF RYTSSTS R+ RER Y YLTEEEI+D
Sbjct: 257 HCWPSPSNAVAEITRVLRSGGVFVGTTFFRYTSSTSWVARLFRERSSLGYGYLTEEEIKD 316
Query: 303 LCTSCGLTNYTSKVQQSFIMFAAQKP 328
LCTSCGLTNY+ K+Q+SFIMF AQKP
Sbjct: 317 LCTSCGLTNYSCKIQKSFIMFTAQKP 342
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463049|ref|XP_002268107.1| PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic [Vitis vinifera] gi|296084558|emb|CBI25579.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust.
Identities = 243/344 (70%), Positives = 273/344 (79%), Gaps = 21/344 (6%)
Query: 3 IAAAAASSSSSLFPKYPCLSRNS----PRLPQSLRFSSTIRA---VTLQPAKSER-NQTL 54
+A A++S +FP+YP LSR+S P SLRF S IRA V L+P S + N L
Sbjct: 1 MATASSSLHQPIFPQYPSLSRSSRFHPPLRLSSLRFPSRIRASSAVALEPESSTQLNNGL 60
Query: 55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKD 114
E DLFSCP+CYEPLIRKGP GL L AIYRSGFKCR C+K+YSSKD YLDLT+ +G KD
Sbjct: 61 EF--DLFSCPVCYEPLIRKGPPGLNLPAIYRSGFKCRSCNKSYSSKDMYLDLTITAGSKD 118
Query: 115 YTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEE-----EYFKSAQGGLLVDVS 169
Y E++P TELFRSP VSFLYERGWRQNFN+SGFPG DEE EYF+ GGLLVDVS
Sbjct: 119 YNELQPNRTELFRSPLVSFLYERGWRQNFNQSGFPGRDEEFKMAQEYFEPVIGGLLVDVS 178
Query: 170 CGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL-TSNLALVRADVCRLPF 228
CGSGLFSRKFA+SGTYSGVVALDFSENMLRQCYDFIK++N L T+NLALVRADV RLPF
Sbjct: 179 CGSGLFSRKFAESGTYSGVVALDFSENMLRQCYDFIKKENPALATTNLALVRADVSRLPF 238
Query: 229 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR--- 285
++G VDAVHAGAALHCWPSPSNAVAEI+RILRSGG+FVGTTFLR + S +LR
Sbjct: 239 STGSVDAVHAGAALHCWPSPSNAVAEITRILRSGGIFVGTTFLRPSFGNSSITSILRPFR 298
Query: 286 --ERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQK 327
ER LQNYN LTE+EIEDLCTSCGL NY SKVQ+SFIMF+AQK
Sbjct: 299 QWERSLQNYNNLTEKEIEDLCTSCGLINYRSKVQRSFIMFSAQK 342
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463051|ref|XP_002268200.1| PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 238/340 (70%), Positives = 264/340 (77%), Gaps = 16/340 (4%)
Query: 3 IAAAAASSSSSLFPKYPCLSRNSPRL--PQ--SLRFSSTIRA---VTLQPAKSERNQTLE 55
+A AA+ LFPKYP L S + PQ SL F S RA V L+P S + +
Sbjct: 1 MAMAASFLHQPLFPKYPFLLHKSQFISRPQISSLPFPSRFRASSAVALEPESSPQLNN-D 59
Query: 56 LEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDY 115
++ DLFSCP+CYEPLIRKGP GL L AIYRSGFKC+ C+K+YSSKD YLDLT+ +G K Y
Sbjct: 60 MDFDLFSCPVCYEPLIRKGPPGLNLPAIYRSGFKCKTCNKSYSSKDMYLDLTITAGSKAY 119
Query: 116 TEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEE-----EYFKSAQGGLLVDVSC 170
E +P TELFRSP VSFLYERGWRQNFN GFPGPDEE EYFK A GGLLVDVSC
Sbjct: 120 NEAQPVRTELFRSPLVSFLYERGWRQNFNLRGFPGPDEEFKMAQEYFKPAAGGLLVDVSC 179
Query: 171 GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 230
GSGLFSRKFA+SGTYSGVVALDFSENML QCYDFIK+DN LT+NLALVRAD+ RLPF+S
Sbjct: 180 GSGLFSRKFAESGTYSGVVALDFSENMLHQCYDFIKKDNPSLTTNLALVRADISRLPFSS 239
Query: 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR--YT-SSTSLTGRVLRER 287
G VDAVHAGAALHCWPSPSNAVAEI+RILRSGG+FVGTTFLR YT SS R R+
Sbjct: 240 GSVDAVHAGAALHCWPSPSNAVAEITRILRSGGIFVGTTFLRPIYTNSSIPAILRPFRQS 299
Query: 288 ILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQK 327
ILQ NYLTE+EIEDLC SC L NYTS +QQSFIMF+AQK
Sbjct: 300 ILQTSNYLTEKEIEDLCRSCALINYTSTIQQSFIMFSAQK 339
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084557|emb|CBI25578.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 237/337 (70%), Positives = 262/337 (77%), Gaps = 16/337 (4%)
Query: 6 AAASSSSSLFPKYPCLSRNSPRL--PQ--SLRFSSTIRA---VTLQPAKSERNQTLELEG 58
AA+ LFPKYP L S + PQ SL F S RA V L+P S + +++
Sbjct: 2 AASFLHQPLFPKYPFLLHKSQFISRPQISSLPFPSRFRASSAVALEPESSPQLNN-DMDF 60
Query: 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEV 118
DLFSCP+CYEPLIRKGP GL L AIYRSGFKC+ C+K+YSSKD YLDLT+ +G K Y E
Sbjct: 61 DLFSCPVCYEPLIRKGPPGLNLPAIYRSGFKCKTCNKSYSSKDMYLDLTITAGSKAYNEA 120
Query: 119 KPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEE-----EYFKSAQGGLLVDVSCGSG 173
+P TELFRSP VSFLYERGWRQNFN GFPGPDEE EYFK A GGLLVDVSCGSG
Sbjct: 121 QPVRTELFRSPLVSFLYERGWRQNFNLRGFPGPDEEFKMAQEYFKPAAGGLLVDVSCGSG 180
Query: 174 LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 233
LFSRKFA+SGTYSGVVALDFSENML QCYDFIK+DN LT+NLALVRAD+ RLPF+SG V
Sbjct: 181 LFSRKFAESGTYSGVVALDFSENMLHQCYDFIKKDNPSLTTNLALVRADISRLPFSSGSV 240
Query: 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR--YT-SSTSLTGRVLRERILQ 290
DAVHAGAALHCWPSPSNAVAEI+RILRSGG+FVGTTFLR YT SS R R+ ILQ
Sbjct: 241 DAVHAGAALHCWPSPSNAVAEITRILRSGGIFVGTTFLRPIYTNSSIPAILRPFRQSILQ 300
Query: 291 NYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQK 327
NYLTE+EIEDLC SC L NYTS +QQSFIMF+AQK
Sbjct: 301 TSNYLTEKEIEDLCRSCALINYTSTIQQSFIMFSAQK 337
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 328 | ||||||
| TAIR|locus:2063218 | 352 | AT2G41040 [Arabidopsis thalian | 0.902 | 0.840 | 0.685 | 4.8e-110 | |
| TAIR|locus:2194759 | 355 | AT1G78140 [Arabidopsis thalian | 0.847 | 0.783 | 0.517 | 2.5e-72 | |
| UNIPROTKB|Q5LVS6 | 208 | SPO0620 "Uncharacterized prote | 0.402 | 0.634 | 0.301 | 9.2e-07 | |
| TIGR_CMR|SPO_0620 | 208 | SPO_0620 "conserved hypothetic | 0.402 | 0.634 | 0.301 | 9.2e-07 | |
| UNIPROTKB|G5EGY9 | 380 | MGCH7_ch7g116 "Sterol 24-C-met | 0.390 | 0.336 | 0.310 | 1e-06 | |
| UNIPROTKB|Q3AB55 | 244 | menG "Demethylmenaquinone meth | 0.304 | 0.409 | 0.330 | 1.5e-06 | |
| TIGR_CMR|CHY_1809 | 244 | CHY_1809 "2-heptaprenyl-1,4-na | 0.304 | 0.409 | 0.330 | 1.5e-06 | |
| POMBASE|SPBC16E9.05 | 378 | erg6 "sterol 24-C-methyltransf | 0.533 | 0.462 | 0.260 | 3.7e-06 | |
| TIGR_CMR|BA_1462 | 258 | BA_1462 "methyltransferase, Ub | 0.304 | 0.387 | 0.292 | 7.3e-06 | |
| SGD|S000004467 | 383 | ERG6 "Delta(24)-sterol C-methy | 0.442 | 0.378 | 0.281 | 2.3e-05 |
| TAIR|locus:2063218 AT2G41040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
Identities = 209/305 (68%), Positives = 245/305 (80%)
Query: 33 RFSSTIRAVTLQPAKSERNQT--LELEG-DLFSCPICYEPLIRKGPTGLTLGAIYRSGFK 89
RF S + + +N+T +E+E +F+CP+CYEPL+RKGP+G+ L AIYRSGFK
Sbjct: 48 RFPSAAISAVAPKSDINKNETPKIEIEETQVFACPVCYEPLMRKGPSGINLQAIYRSGFK 107
Query: 90 CRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFP 149
C +C+KTYSSKD YLDLTV + L DY EVKP +TELFRSP VSFLYERGWRQ F RSGFP
Sbjct: 108 CGQCNKTYSSKDEYLDLTVTADLDDYNEVKPITTELFRSPLVSFLYERGWRQAFKRSGFP 167
Query: 150 GPDEE-----EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 204
GPDEE EYFK A+GGLLVDVSCGSGLFSRKFA+SG YSGV+ALD+SENMLRQC +F
Sbjct: 168 GPDEEFRMAEEYFKEAEGGLLVDVSCGSGLFSRKFAQSGKYSGVIALDYSENMLRQCKEF 227
Query: 205 IKQDNTILTS-NLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 263
IK DNT S N+A+VRADV RLPF SG VDAVHAGAALHCWPSP+NA+AEI R+LRSGG
Sbjct: 228 IKNDNTFDNSTNIAVVRADVSRLPFPSGSVDAVHAGAALHCWPSPTNAIAEICRVLRSGG 287
Query: 264 VFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMF 323
VFVGTTFLRY+ ST R + RILQ+YNYL ++EI+D+CTSCGLT+Y +Q SFIMF
Sbjct: 288 VFVGTTFLRYSPSTPWIIRPFQSRILQSYNYLMQDEIKDVCTSCGLTDYEDYIQDSFIMF 347
Query: 324 AAQKP 328
A+KP
Sbjct: 348 TARKP 352
|
|
| TAIR|locus:2194759 AT1G78140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
Identities = 152/294 (51%), Positives = 193/294 (65%)
Query: 47 KSERNQTLELEGDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLD 105
K ++N+ E + +CPICY L P GL A +C C ++YS + +LD
Sbjct: 65 KKDKNRG---EKKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLD 121
Query: 106 LTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEE-----EYFKSA 160
L V SG K Y+E P STELFR+P VSFLYERGWRQNF GFPGP++E Y K
Sbjct: 122 LAVASGSKRYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPV 181
Query: 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI-KQDNTILTSNLALV 219
GG ++D SCGSG+FSR F +S +S V+ALD+SENMLRQCY+ + K++N L LV
Sbjct: 182 LGGNIIDASCGSGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLV 241
Query: 220 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL 279
RAD+ RLPF SG VDAVHAGAALHCWPSPS+AVAEISR+LR GGVFV TTF+ Y S
Sbjct: 242 RADIARLPFLSGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFI-YDGPFSF 300
Query: 280 TG--RVLRERILQ---NYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQKP 328
+ LR+ I++ ++ +L E E+ED+C +CGL N+T FIM +A KP
Sbjct: 301 IPFLKNLRQEIMRYSGSHIFLNERELEDICKACGLVNFTRVRNGPFIMLSATKP 354
|
|
| UNIPROTKB|Q5LVS6 SPO0620 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 44/146 (30%), Positives = 71/146 (48%)
Query: 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 219
A G L+D+ CG G + + SG V +DFSE ML++ + + + + +A
Sbjct: 44 ADGDSLIDIGCGHGETLFQADRIVRLSGSVGVDFSEVMLKRAR--ARNRDAVWDTRMAFH 101
Query: 220 RADVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS 276
AD LPF G +VH ++ WP+P+ +AE R+LR GG F+ F Y S+
Sbjct: 102 CADTAALPFPDKRFGKALSVHT---IYFWPNPAAHLAEAFRVLRRGGRFL---FC-YRST 154
Query: 277 TSLTGRVLRERILQNYNYLTEEEIED 302
R + E Y + + +E+E+
Sbjct: 155 ADR--RAVEEFPDTVYRFPSVQEVEE 178
|
|
| TIGR_CMR|SPO_0620 SPO_0620 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 44/146 (30%), Positives = 71/146 (48%)
Query: 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 219
A G L+D+ CG G + + SG V +DFSE ML++ + + + + +A
Sbjct: 44 ADGDSLIDIGCGHGETLFQADRIVRLSGSVGVDFSEVMLKRAR--ARNRDAVWDTRMAFH 101
Query: 220 RADVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS 276
AD LPF G +VH ++ WP+P+ +AE R+LR GG F+ F Y S+
Sbjct: 102 CADTAALPFPDKRFGKALSVHT---IYFWPNPAAHLAEAFRVLRRGGRFL---FC-YRST 154
Query: 277 TSLTGRVLRERILQNYNYLTEEEIED 302
R + E Y + + +E+E+
Sbjct: 155 ADR--RAVEEFPDTVYRFPSVQEVEE 178
|
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| UNIPROTKB|G5EGY9 MGCH7_ch7g116 "Sterol 24-C-methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 45/145 (31%), Positives = 71/145 (48%)
Query: 134 LYERGWRQNF-------NRSGFPGPDEEEYFKSAQGGL-----LVDVSCGSGLFSRKFAK 181
+YE GW Q+F N S + E++ + Q G+ ++DV CG G +R+ AK
Sbjct: 90 IYEYGWGQSFHFCRFSHNESFYQAIARHEHYLAHQIGIKEGMTVLDVGCGVGGPAREIAK 149
Query: 182 SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA-GA 240
T VV L+ ++ + + + KQ+ L S L V+ D ++ F DAV+A A
Sbjct: 150 F-TGCNVVGLNNNDYQIDRATHYAKQEK--LDSQLQFVKGDFMQMSFPDESFDAVYAIEA 206
Query: 241 ALHCWPSPSNAVAEISRILRSGGVF 265
+H P +EI R+L+ GG F
Sbjct: 207 TVHA-PKLEGVYSEIFRVLKPGGTF 230
|
|
| UNIPROTKB|Q3AB55 menG "Demethylmenaquinone methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 133 (51.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 34/103 (33%), Positives = 52/103 (50%)
Query: 162 GGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
GG +DV+CG+G+F+ + A+ G VV LDF+ENML I + + + + LV
Sbjct: 52 GGRGLDVACGTGMFAIELARVVGPTGEVVGLDFNENMLEVARKNIARYS--MEKIIKLVH 109
Query: 221 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 263
+ LPF D G AL P + E+ R+++ GG
Sbjct: 110 GNALALPFPDNSFDVATIGFALRNVPDIEKTILEMKRVVKPGG 152
|
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| TIGR_CMR|CHY_1809 CHY_1809 "2-heptaprenyl-1,4-naphthoquinone methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 133 (51.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 34/103 (33%), Positives = 52/103 (50%)
Query: 162 GGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
GG +DV+CG+G+F+ + A+ G VV LDF+ENML I + + + + LV
Sbjct: 52 GGRGLDVACGTGMFAIELARVVGPTGEVVGLDFNENMLEVARKNIARYS--MEKIIKLVH 109
Query: 221 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 263
+ LPF D G AL P + E+ R+++ GG
Sbjct: 110 GNALALPFPDNSFDVATIGFALRNVPDIEKTILEMKRVVKPGG 152
|
|
| POMBASE|SPBC16E9.05 erg6 "sterol 24-C-methyltransferase Erg6" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 134 (52.2 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 51/196 (26%), Positives = 85/196 (43%)
Query: 134 LYERGWRQNFNRSGFPGPD-------EEEYFKSAQGGL-----LVDVSCGSGLFSRKFAK 181
LYE GW Q+F+ S F + E++ + + G+ ++DV CG G +R+ +
Sbjct: 85 LYEYGWSQSFHFSRFYKGEAFAQSIARHEHYLAYRMGIKPGSRVLDVGCGVGGPAREITE 144
Query: 182 SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA-GA 240
T +V L+ ++ + +C ++ + N L V+ D +PF D V+A A
Sbjct: 145 F-TGCNLVGLNNNDYQISRCNNYAVKRN--LDKKQVFVKGDFMHMPFEDNTFDYVYAIEA 201
Query: 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEI 300
+H PS EI R+L+ GGVF G + S + + R + YN + I
Sbjct: 202 TVHA-PSLEGVYGEIFRVLKPGGVF-GV--YEWVMSDDYDSSIPKHREIA-YNIEVGDGI 256
Query: 301 EDLCTSCGLTNYTSKV 316
+ C KV
Sbjct: 257 PQMVRKCDAVEAIKKV 272
|
|
| TIGR_CMR|BA_1462 BA_1462 "methyltransferase, UbiE/COQ5 family" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 31/106 (29%), Positives = 54/106 (50%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
Q ++D+ CG G+++++ A G S VV LDFS+ +L+ ++N SN++ +
Sbjct: 34 QNKQIIDIGCGGGIYTKELALMGAKS-VVGLDFSKEILQAA-----KENCSGFSNISFIH 87
Query: 221 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 266
D P+ + D V + A +H + E SRIL+ GV +
Sbjct: 88 GDAHSTPYPNDTFDIVISRAVIHHLQDIPTFLREASRILKKNGVLI 133
|
|
| SGD|S000004467 ERG6 "Delta(24)-sterol C-methyltransferase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 47/167 (28%), Positives = 79/167 (47%)
Query: 112 LKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGF-PGPD-------EEEY--FKSA- 160
L+DY E +T + + F YE GW +F+ S F G E Y +K+
Sbjct: 63 LEDYNE----ATHSYYNVVTDF-YEYGWGSSFHFSRFYKGESFAASIARHEHYLAYKAGI 117
Query: 161 -QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 219
+G L++DV CG G +R+ A+ T V+ L+ ++ + + + K+ N L+ + V
Sbjct: 118 QRGDLVLDVGCGVGGPAREIARF-TGCNVIGLNNNDYQIAKAKYYAKKYN--LSDQMDFV 174
Query: 220 RADVCRLPFASGFVDAVHA-GAALHCWPSPSNAVAEISRILRSGGVF 265
+ D ++ F D V+A A H P +EI ++L+ GG F
Sbjct: 175 KGDFMKMDFEENTFDKVYAIEATCHA-PKLEGVYSEIYKVLKPGGTF 220
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WPT7 | Y2104_ARATH | 2, ., 1, ., 1, ., - | 0.6819 | 0.9024 | 0.8409 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pg.C_1520037 | hypothetical protein (308 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 328 | |||
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 4e-22 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 5e-16 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 1e-14 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 1e-14 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 3e-13 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 1e-12 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 4e-12 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 4e-11 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 7e-11 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 4e-09 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 2e-08 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 3e-08 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 3e-07 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 3e-07 | |
| PRK05785 | 226 | PRK05785, PRK05785, hypothetical protein; Provisio | 1e-06 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 2e-06 | |
| PRK10258 | 251 | PRK10258, PRK10258, biotin biosynthesis protein Bi | 2e-06 | |
| PLN02233 | 261 | PLN02233, PLN02233, ubiquinone biosynthesis methyl | 6e-06 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 2e-04 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 4e-22
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 10/101 (9%)
Query: 166 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 225
+DV CG+GL + A+ G V +D S ML + V D
Sbjct: 1 LDVGCGTGLLAEALARRGGAR-VTGVDLSPEMLALARKR---------APRKFVVGDAED 50
Query: 226 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 266
LPF D V + LH P P A+ EI+R+L+ GG V
Sbjct: 51 LPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 5e-16
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 22/143 (15%)
Query: 167 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 226
D+ CG+G +R K + +A D S ML Q T L+ N+ + D +L
Sbjct: 40 DIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQA-------KTKLSENVQFICGDAEKL 92
Query: 227 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE 286
P D + + AL S A++E++R+L+ GG+ +TF T L E
Sbjct: 93 PLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGT---------LHE 143
Query: 287 RILQNY-----NYLTEEEIEDLC 304
+ Q++ YL+ +E++ L
Sbjct: 144 -LRQSFGQHGLRYLSLDELKALL 165
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-14
Identities = 40/103 (38%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 162 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
G ++DV CG G +R+ A+ G VV +D SE ML K+ L N+ VR
Sbjct: 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML----ALAKERAAGLGPNVEFVR 75
Query: 221 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 263
D LPF G DAV + L P+ A+AEI+R+LR GG
Sbjct: 76 GDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGG 118
|
Length = 241 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 1e-14
Identities = 42/135 (31%), Positives = 60/135 (44%), Gaps = 21/135 (15%)
Query: 137 RGWRQNF-NRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFS 194
R WR+ G G ++D++CG+G + AK+ +G VV LDFS
Sbjct: 37 RVWRRKTIKWLGVR-----------PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFS 85
Query: 195 ENML---RQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNA 251
E ML R+ K + L+ N+ V+ D LPF DAV L P A
Sbjct: 86 EGMLAVGRE-----KLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKA 140
Query: 252 VAEISRILRSGGVFV 266
+ E+ R+L+ GG V
Sbjct: 141 LREMYRVLKPGGRLV 155
|
Length = 239 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-13
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 15/148 (10%)
Query: 126 FRSPFVSFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY 185
+ +SF R WR+ P G ++DV+CG+G + AKS
Sbjct: 26 LMNDLMSFGLHRLWRRALISLLGIKP----------GDKVLDVACGTGDMALLLAKSVGT 75
Query: 186 SGVVALDFSENMLRQCYD-FIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHC 244
VV LD SE+ML + K+ N+ V D LPF DAV L
Sbjct: 76 GEVVGLDISESMLEVAREKLKKKGV----QNVEFVVGDAENLPFPDNSFDAVTISFGLRN 131
Query: 245 WPSPSNAVAEISRILRSGGVFVGTTFLR 272
A+ E+ R+L+ GG + F +
Sbjct: 132 VTDIDKALKEMYRVLKPGGRLLVLEFSK 159
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Length = 238 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-12
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 16/138 (11%)
Query: 130 FVSFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-V 188
+SF R WR+ + ++ ++DV+CG+G + + AKS G V
Sbjct: 18 LLSFGLHRLWRRRAVKLIGVFKGQK----------VLDVACGTGDLAIELAKSAPDRGKV 67
Query: 189 VALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP 248
+DFS ML + + + L N+ ++AD LPF DAV L
Sbjct: 68 TGVDFSSEMLE-----VAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDI 122
Query: 249 SNAVAEISRILRSGGVFV 266
A+ E+ R+L+ GG V
Sbjct: 123 QKALREMYRVLKPGGRLV 140
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-12
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 2/100 (2%)
Query: 166 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 225
+D+ CG+G R ++ +D S L + + + + L D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 226 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVF 265
L S D V A LH P + + R+L+ GGV
Sbjct: 61 LDPGS--FDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-11
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 12/109 (11%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENML---RQCYDFIKQDNTILTSNLA 217
G ++D+ CG+G + + A+ + V +D S ML R+ +
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGP------RIT 54
Query: 218 LVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 266
V+ D DAV G + ++ +L+ GG V
Sbjct: 55 FVQGDAPDALDLLEGFDAVFIGGGGGDLL---ELLDALASLLKPGGRLV 100
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 7e-11
Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 19/155 (12%)
Query: 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA 217
+ GG ++D+ CG+G+ R + G V +D S + F D +L
Sbjct: 19 RLKPGGRVLDIGCGTGILLRLLRERGFD--VTGVDPSPAAVLIFSLFDAPDPAVL----- 71
Query: 218 LVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST 277
+G D + A L P P + ++ +L+ GGV + +T L +
Sbjct: 72 ------------AGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVLLISTPLADDDAR 119
Query: 278 SLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNY 312
+ ++ +EE ++ L G
Sbjct: 120 LFANWHYLRPRNTHISFYSEESLKRLLEKAGFELV 154
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-09
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 6/109 (5%)
Query: 165 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 224
++D+ CG+G + A V +D S L K +L N+ +++ D
Sbjct: 2 VLDLGCGTGALALALASGPGAR-VTGVDISPVALELAR---KAAAALLADNVEVLKGDAE 57
Query: 225 RLPF-ASGFVDAVHAGAALHCWP-SPSNAVAEISRILRSGGVFVGTTFL 271
LP A D + + LH + + E R+L+ GGV V T L
Sbjct: 58 ELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTLVL 106
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-08
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 165 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 224
++D+ CG+G R A++G S V +D S+ L + ++ + V AD
Sbjct: 1 ILDLGCGTGRVLRALARAG-PSSVTGVDISKEALELAKERLRDKGPKVR----FVVADAR 55
Query: 225 RLPFASGFVDAVH-AGAALHCWPSPS--NAVAEISRILRSGG 263
LPF G D V AG +L + E +R+LR GG
Sbjct: 56 DLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 53.4 bits (125), Expect = 3e-08
Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 5/141 (3%)
Query: 165 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 224
++D+ CG+G + G + VV +D S ML + + V AD
Sbjct: 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGL---GLVDFVVADAL 108
Query: 225 R--LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR 282
LPF + + P+ A+ E+ R+L+ GG V + LR
Sbjct: 109 GGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRLAA 168
Query: 283 VLRERILQNYNYLTEEEIEDL 303
+L E+E L
Sbjct: 169 LLGFGDPVLERGDILLELEAL 189
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Length = 257 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 3e-07
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 162 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
G +DV+ G+G ++ + S SG VV LD +ENML++ K++ N+ ++
Sbjct: 48 GNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKY---NIEFLQ 104
Query: 221 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 266
+ LPF D V L +P + E R+L+ GG V
Sbjct: 105 GNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVV 150
|
Length = 233 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-07
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 165 LVDVSCGSGLFSRKFA-KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 223
++D+ CG+G + A K G + VV +D SE + + + N+ ++ D+
Sbjct: 7 VLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAI-EKAKENAKKLGY--ENVEFIQGDI 63
Query: 224 CRLP---FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 266
LP D V + L+ P P + EI R+L+ GGV +
Sbjct: 64 EELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLI 109
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 22/103 (21%)
Query: 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 222
++DV+ G G S F K Y VVALD++ENML+ + LV D
Sbjct: 53 KKVLDVAAGKGELSYHFKKVFKYY-VVALDYAENMLK----------------MNLVADD 95
Query: 223 --VC---RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILR 260
V LPF D V + ALH + +AE +R+ R
Sbjct: 96 KVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSR 138
|
Length = 226 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-06
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 14/137 (10%)
Query: 131 VSFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VV 189
+SF + WR+ D + G +DV CG+ +S A++ G V+
Sbjct: 25 ISFQRHKKWRK----------DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVI 74
Query: 190 ALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS 249
LDFSENML +K N+ LV + LPF D V G L P
Sbjct: 75 GLDFSENMLSVGRQKVKDAGL---HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYM 131
Query: 250 NAVAEISRILRSGGVFV 266
+ E+ R+++ GG V
Sbjct: 132 QVLREMYRVVKPGGKVV 148
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 167 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 226
D CG G SR + + G S V ALD S ML Q D+ + D+ L
Sbjct: 48 DAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQKDAADHYLA--------GDIESL 97
Query: 227 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271
P A+ D + A+ + S A+ E+ R++R GGV TT +
Sbjct: 98 PLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142
|
Length = 251 |
| >gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 6e-06
Identities = 43/176 (24%), Positives = 65/176 (36%), Gaps = 32/176 (18%)
Query: 162 GGLLVDVSCGSG----LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA 217
G ++D+ CGSG L S K G V+ LDFS L + N+
Sbjct: 74 GDRVLDLCCGSGDLAFLLSEKVGSDGK---VMGLDFSSEQLAVAASRQELKAKSCYKNIE 130
Query: 218 LVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST 277
+ D LPF + DA+ G L A+ E+ R+L+ G + L + ST
Sbjct: 131 WIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGS---RVSILDFNKST 187
Query: 278 SLTGRVLRERILQNY----------------------NYLTEEEIEDLCTSCGLTN 311
++E ++ N YLT EE+E L G ++
Sbjct: 188 QPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSS 243
|
Length = 261 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 2e-04
Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 11/114 (9%)
Query: 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 221
G ++D GSG F A++G + VV ++ + L + +V
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALA--RRRLALAGLAPRVRVVVG 58
Query: 222 DVCRLP-FASGFVDAV--------HAGAALHCWPSPSNAVAEISRILRSGGVFV 266
D L G D V AG +A R+L+ GGV V
Sbjct: 59 DARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLV 112
|
This family contains methyltransferase domains. Length = 117 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 328 | |||
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.96 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.96 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.93 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.92 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.92 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.89 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.89 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.88 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.88 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.86 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.86 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.85 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.85 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.85 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.84 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.84 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.84 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.84 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.84 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.83 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.83 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.82 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.81 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.81 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.81 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.81 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.8 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.8 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.8 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.8 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.78 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.77 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.77 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.77 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.77 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.76 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.75 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.75 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.74 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.74 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.74 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.73 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.72 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.72 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.72 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.71 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.7 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.7 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.69 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.68 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.68 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.68 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.67 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.67 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.66 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.66 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.66 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.65 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.65 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.64 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.64 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.64 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.63 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.63 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.63 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.63 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.63 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.62 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.62 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.6 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.6 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.6 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.58 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.58 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.58 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.57 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.56 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.55 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.55 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.54 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.53 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.52 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.52 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.52 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.52 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.52 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.52 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.51 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.51 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.51 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.5 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.5 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.49 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.49 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.48 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.48 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.47 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.46 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.46 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.45 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.44 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.44 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.44 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.44 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.44 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.42 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.42 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.41 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.39 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.39 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.38 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.37 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.37 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.36 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.36 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.36 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.35 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.35 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.34 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.34 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.33 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.33 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.33 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.33 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.32 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.32 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.3 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.29 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.28 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.26 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.26 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.25 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.24 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.24 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.22 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.22 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.21 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 99.21 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.21 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 99.18 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.16 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.15 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.15 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.14 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.13 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.11 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.1 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.08 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.08 | |
| PLN02366 | 308 | spermidine synthase | 99.07 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.05 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.05 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.05 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 99.04 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.03 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.03 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.01 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.98 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.98 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.96 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.95 | |
| PLN02476 | 278 | O-methyltransferase | 98.94 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.93 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.93 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.92 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.92 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.91 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.88 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.85 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.85 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.82 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.82 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.8 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.8 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.79 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.79 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.78 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.77 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.76 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.76 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.74 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.73 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.72 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.71 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.71 | |
| PLN02823 | 336 | spermine synthase | 98.7 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.67 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.64 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.64 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.63 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.62 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.61 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.61 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.58 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.58 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.56 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.55 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.55 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.54 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.53 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.53 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.52 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.49 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.46 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 98.43 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.43 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.41 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.4 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.37 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.35 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.35 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.34 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.31 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.31 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.3 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.3 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.27 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 98.26 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.24 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.23 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.22 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.22 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.2 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.18 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.16 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.13 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.13 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.12 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.1 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.08 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 98.07 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.06 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.01 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.99 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.99 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.98 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.95 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.95 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.91 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.88 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.87 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.87 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.86 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.86 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.85 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.84 | |
| PRK11827 | 60 | hypothetical protein; Provisional | 97.83 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.82 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.8 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.77 | |
| COG2835 | 60 | Uncharacterized conserved protein [Function unknow | 97.76 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.67 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.58 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.55 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.51 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.47 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.45 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.42 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.42 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.34 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 97.31 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.3 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.25 | |
| PF03966 | 68 | Trm112p: Trm112p-like protein; InterPro: IPR005651 | 97.1 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.07 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.07 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 96.99 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 96.88 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 96.84 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 96.61 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.58 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.57 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.53 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.46 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 96.43 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 96.38 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 96.35 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.34 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.32 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.26 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.23 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.16 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 96.02 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 96.02 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.92 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 95.8 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 95.79 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 95.77 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 95.77 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.69 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 95.64 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 95.63 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 95.45 | |
| PF13719 | 37 | zinc_ribbon_5: zinc-ribbon domain | 95.41 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 95.35 | |
| PHA01634 | 156 | hypothetical protein | 95.21 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 95.08 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.06 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.01 | |
| PRK00420 | 112 | hypothetical protein; Validated | 94.89 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 94.83 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 94.81 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 94.75 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 94.67 | |
| PF10571 | 26 | UPF0547: Uncharacterised protein family UPF0547; I | 94.64 | |
| PRK09678 | 72 | DNA-binding transcriptional regulator; Provisional | 94.57 | |
| COG1997 | 89 | RPL43A Ribosomal protein L37AE/L43A [Translation, | 94.56 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 94.54 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 94.54 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 94.53 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 94.49 | |
| PRK00398 | 46 | rpoP DNA-directed RNA polymerase subunit P; Provis | 94.46 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 94.43 | |
| PF13717 | 36 | zinc_ribbon_4: zinc-ribbon domain | 94.35 | |
| PF14803 | 34 | Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C. | 94.33 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 94.31 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 94.18 | |
| COG1645 | 131 | Uncharacterized Zn-finger containing protein [Gene | 94.15 | |
| PHA00626 | 59 | hypothetical protein | 94.13 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 93.76 | |
| PF08274 | 30 | PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01 | 93.65 | |
| TIGR01206 | 54 | lysW lysine biosynthesis protein LysW. This very s | 93.59 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 93.58 | |
| PF08271 | 43 | TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013 | 93.53 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 93.48 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 93.35 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 93.29 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 93.24 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 93.22 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.2 | |
| PRK10220 | 111 | hypothetical protein; Provisional | 93.19 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 93.17 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 93.15 | |
| PRK00464 | 154 | nrdR transcriptional regulator NrdR; Validated | 92.98 | |
| PRK13699 | 227 | putative methylase; Provisional | 92.91 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 92.82 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 92.78 | |
| PF11781 | 36 | RRN7: RNA polymerase I-specific transcription init | 92.74 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 92.43 | |
| TIGR02098 | 38 | MJ0042_CXXC MJ0042 family finger-like domain. This | 92.37 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 92.17 | |
| TIGR00686 | 109 | phnA alkylphosphonate utilization operon protein P | 92.04 | |
| PF08792 | 33 | A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: I | 92.03 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 91.89 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 91.88 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 91.87 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 91.7 | |
| COG3809 | 88 | Uncharacterized protein conserved in bacteria [Fun | 91.54 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 91.49 | |
| COG4306 | 160 | Uncharacterized protein conserved in bacteria [Fun | 91.35 | |
| KOG1088 | 124 | consensus Uncharacterized conserved protein [Funct | 91.31 | |
| PF09862 | 113 | DUF2089: Protein of unknown function (DUF2089); In | 91.3 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 91.29 | |
| PF13240 | 23 | zinc_ribbon_2: zinc-ribbon domain | 91.25 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 91.19 | |
| PF09297 | 32 | zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do | 91.15 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 91.12 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 91.11 | |
| COG1656 | 165 | Uncharacterized conserved protein [Function unknow | 91.09 | |
| PF09538 | 108 | FYDLN_acid: Protein of unknown function (FYDLN_aci | 91.05 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 91.04 | |
| PF14446 | 54 | Prok-RING_1: Prokaryotic RING finger family 1 | 90.82 | |
| PF03119 | 28 | DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc f | 90.76 | |
| PF14205 | 55 | Cys_rich_KTR: Cysteine-rich KTR | 90.51 | |
| PRK00432 | 50 | 30S ribosomal protein S27ae; Validated | 90.19 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 90.18 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 90.08 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 89.97 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 89.76 | |
| PF06677 | 41 | Auto_anti-p27: Sjogren's syndrome/scleroderma auto | 89.75 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 89.59 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 89.57 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 89.54 | |
| smart00659 | 44 | RPOLCX RNA polymerase subunit CX. present in RNA p | 89.53 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 89.39 | |
| PF01780 | 90 | Ribosomal_L37ae: Ribosomal L37ae protein family; I | 89.13 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 88.96 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 88.76 | |
| PF03604 | 32 | DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa | 88.72 | |
| PF13248 | 26 | zf-ribbon_3: zinc-ribbon domain | 88.62 | |
| smart00661 | 52 | RPOL9 RNA polymerase subunit 9. | 88.47 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 88.31 | |
| PF14353 | 128 | CpXC: CpXC protein | 88.29 | |
| PF01096 | 39 | TFIIS_C: Transcription factor S-II (TFIIS); InterP | 88.28 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 88.27 | |
| PF04606 | 47 | Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: I | 88.11 | |
| TIGR03655 | 53 | anti_R_Lar restriction alleviation protein, Lar fa | 88.1 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 88.06 | |
| TIGR02300 | 129 | FYDLN_acid conserved hypothetical protein TIGR0230 | 88.04 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 88.03 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 87.93 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 87.93 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 87.85 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 87.72 | |
| PF07191 | 70 | zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 | 87.69 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 87.64 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 87.55 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 87.51 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 87.47 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 87.29 | |
| PF13453 | 41 | zf-TFIIB: Transcription factor zinc-finger | 87.16 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 87.12 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 86.94 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 86.8 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 86.62 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 86.53 | |
| PTZ00255 | 90 | 60S ribosomal protein L37a; Provisional | 86.38 | |
| KOG3507 | 62 | consensus DNA-directed RNA polymerase, subunit RPB | 86.33 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 86.3 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 86.1 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 86.06 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 86.0 | |
| PF14740 | 289 | DUF4471: Domain of unknown function (DUF4471) | 85.93 | |
| TIGR00280 | 91 | L37a ribosomal protein L37a. This model finds euka | 85.84 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 85.81 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 85.76 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 85.68 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 85.58 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 85.49 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 85.43 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 85.41 | |
| smart00440 | 40 | ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo | 85.4 | |
| PF01927 | 147 | Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T | 85.37 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 85.13 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 85.09 | |
| COG1326 | 201 | Uncharacterized archaeal Zn-finger protein [Genera | 84.95 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 84.87 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 84.87 | |
| PRK03976 | 90 | rpl37ae 50S ribosomal protein L37Ae; Reviewed | 84.86 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 84.74 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 84.69 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 84.59 | |
| PF02150 | 35 | RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; I | 84.53 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 84.25 | |
| PF14354 | 61 | Lar_restr_allev: Restriction alleviation protein L | 84.23 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 84.03 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 83.97 | |
| COG1327 | 156 | Predicted transcriptional regulator, consists of a | 83.75 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 83.68 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 83.65 | |
| COG3877 | 122 | Uncharacterized protein conserved in bacteria [Fun | 83.39 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 83.26 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 83.07 | |
| PF03811 | 36 | Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR0 | 83.05 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 82.94 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 82.88 | |
| COG2888 | 61 | Predicted Zn-ribbon RNA-binding protein with a fun | 82.75 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 82.74 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 82.72 | |
| COG1996 | 49 | RPC10 DNA-directed RNA polymerase, subunit RPC10 ( | 82.68 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 82.52 | |
| cd03420 | 69 | SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like | 82.46 | |
| smart00778 | 37 | Prim_Zn_Ribbon Zinc-binding domain of primase-heli | 82.45 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 82.08 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 82.08 | |
| TIGR00244 | 147 | transcriptional regulator NrdR. Members of this al | 82.03 | |
| smart00834 | 41 | CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C | 81.95 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 81.85 | |
| PF07754 | 24 | DUF1610: Domain of unknown function (DUF1610); Int | 81.56 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 81.52 | |
| PF11253 | 127 | DUF3052: Protein of unknown function (DUF3052); In | 81.46 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 81.45 | |
| PRK12495 | 226 | hypothetical protein; Provisional | 81.41 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 81.39 | |
| COG1571 | 421 | Predicted DNA-binding protein containing a Zn-ribb | 81.37 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 81.26 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 81.24 | |
| PF10083 | 158 | DUF2321: Uncharacterized protein conserved in bact | 81.19 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 81.05 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 81.01 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 80.9 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 80.89 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 80.89 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 80.86 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 80.81 | |
| PF07282 | 69 | OrfB_Zn_ribbon: Putative transposase DNA-binding d | 80.81 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 80.8 | |
| PRK00299 | 81 | sulfur transfer protein SirA; Reviewed | 80.8 | |
| TIGR01053 | 31 | LSD1 zinc finger domain, LSD1 subclass. This model | 80.62 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 80.59 | |
| PF01206 | 70 | TusA: Sulfurtransferase TusA; InterPro: IPR001455 | 80.57 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 80.53 | |
| COG1779 | 201 | C4-type Zn-finger protein [General function predic | 80.51 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 80.51 | |
| smart00531 | 147 | TFIIE Transcription initiation factor IIE. | 80.33 | |
| TIGR00373 | 158 | conserved hypothetical protein TIGR00373. This fam | 80.18 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 80.15 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 80.1 |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=205.59 Aligned_cols=188 Identities=24% Similarity=0.331 Sum_probs=154.8
Q ss_pred CchHHHHHHhhHHhhhhcCCCCCcchhhhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh
Q 020307 128 SPFVSFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 207 (328)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~ 207 (328)
|+.+|+..++.|++.+... +...+|.+|||+|||||.++..+++..+..+|+|+|+|+.|++.|+++...
T Consensus 28 n~~~S~g~~~~Wr~~~i~~----------~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~ 97 (238)
T COG2226 28 NDLMSFGLHRLWRRALISL----------LGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKK 97 (238)
T ss_pred cccccCcchHHHHHHHHHh----------hCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhc
Confidence 6788999999999998854 445589999999999999999999997688999999999999999999987
Q ss_pred cCcCCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCC-c-chhhHHHH
Q 020307 208 DNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS-T-SLTGRVLR 285 (328)
Q Consensus 208 ~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~-~~~~~~~~ 285 (328)
.+ ..++.|+.+|++++||++++||+|++.++|++++|+.++|+|+.|+|||||++++.+...+... . ......+.
T Consensus 98 ~~---~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~ 174 (238)
T COG2226 98 KG---VQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYF 174 (238)
T ss_pred cC---ccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHH
Confidence 66 3449999999999999999999999999999999999999999999999999999998875221 1 11111111
Q ss_pred H-------------------hhhccCCCCCHHHHHHHHHHCCCeEEE--EEEeCcEEEEEEeCC
Q 020307 286 E-------------------RILQNYNYLTEEEIEDLCTSCGLTNYT--SKVQQSFIMFAAQKP 328 (328)
Q Consensus 286 ~-------------------~~~~~~~~~~~~~l~~ll~~~Gf~~v~--~~~~~~~~~~~a~k~ 328 (328)
. .......+.+.+++..+++++||+.+. ....+...++.+.|+
T Consensus 175 ~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K~ 238 (238)
T COG2226 175 KYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYKP 238 (238)
T ss_pred HhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEecC
Confidence 1 111344578899999999999999776 344566688888875
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-29 Score=214.70 Aligned_cols=187 Identities=27% Similarity=0.448 Sum_probs=94.3
Q ss_pred CchHHHHHHhhHHhhhhcCCCCCcchhhhccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHH
Q 020307 128 SPFVSFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIK 206 (328)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~ 206 (328)
|..+++..++.|++..... +...++.+|||+|||+|.++..+++. ++..+|+|+|+|++|++.|++++.
T Consensus 24 n~~ls~g~~~~wr~~~~~~----------~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~ 93 (233)
T PF01209_consen 24 NDLLSFGQDRRWRRKLIKL----------LGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLK 93 (233)
T ss_dssp -------------SHHHHH----------HT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHhc----------cCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHH
Confidence 5678999999999977642 55677889999999999999999886 556799999999999999999998
Q ss_pred hcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCC-----------
Q 020307 207 QDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTS----------- 275 (328)
Q Consensus 207 ~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~----------- 275 (328)
..+ ..++.++++|++++|+++++||+|++.+++++++|+.+.|+|+.|+|||||++++.++..+..
T Consensus 94 ~~~---~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~ 170 (233)
T PF01209_consen 94 REG---LQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYF 170 (233)
T ss_dssp HTT-----SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH--
T ss_pred hhC---CCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeee
Confidence 765 459999999999999999999999999999999999999999999999999999999887622
Q ss_pred --CcchhhHHHHHh-------hhccCCCCCHHHHHHHHHHCCCeEEEE--EEeCcEEEEEEeC
Q 020307 276 --STSLTGRVLRER-------ILQNYNYLTEEEIEDLCTSCGLTNYTS--KVQQSFIMFAAQK 327 (328)
Q Consensus 276 --~~~~~~~~~~~~-------~~~~~~~~~~~~l~~ll~~~Gf~~v~~--~~~~~~~~~~a~k 327 (328)
..|+++..+... ......+.+.+++.++++++||+.++. ...+...++++.|
T Consensus 171 ~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 171 KYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ---------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 111111111111 113445777899999999999997763 3355557777765
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=190.98 Aligned_cols=188 Identities=22% Similarity=0.308 Sum_probs=139.3
Q ss_pred hHHHHHHhhHHhhhhcCCCCCcchhhhccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhc
Q 020307 130 FVSFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQD 208 (328)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~ 208 (328)
..+...+..|++.... .+...++.+|||+|||+|.++..+++. ++..+|+|+|+|++|++.|+++....
T Consensus 52 ~~s~g~~~~~r~~~~~----------~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~ 121 (261)
T PLN02233 52 LLSLGQHRIWKRMAVS----------WSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELK 121 (261)
T ss_pred hhcCChhHHHHHHHHH----------HhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhh
Confidence 3444556677765543 244567889999999999999998886 45569999999999999998775421
Q ss_pred CcCCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCC-cchhhHHHHH-
Q 020307 209 NTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS-TSLTGRVLRE- 286 (328)
Q Consensus 209 ~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~- 286 (328)
......++.++++|++++|+++++||+|++.++++|++|+..+++++.|+|||||++++.++...... .+...+.+..
T Consensus 122 ~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~ 201 (261)
T PLN02233 122 AKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDN 201 (261)
T ss_pred hhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhh
Confidence 00014579999999999999999999999999999999999999999999999999999998764321 1111111110
Q ss_pred -----------------hhhccCCCCCHHHHHHHHHHCCCeEEEEEEe--CcEEEEEEeC
Q 020307 287 -----------------RILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ--QSFIMFAAQK 327 (328)
Q Consensus 287 -----------------~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~--~~~~~~~a~k 327 (328)
.......+++++++.++++++||+.++.... +...++++++
T Consensus 202 ~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~~ 261 (261)
T PLN02233 202 VVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVATR 261 (261)
T ss_pred hhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEeC
Confidence 0012245789999999999999998875443 3336666653
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-24 Score=179.75 Aligned_cols=176 Identities=20% Similarity=0.293 Sum_probs=146.6
Q ss_pred CchHHHHHHhhHHhhhhcCCCCCcchhhhccccCCCeEEEEcCCcCHHHHHHHHhCCC------ceEEEEeCCHHHHHHH
Q 020307 128 SPFVSFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY------SGVVALDFSENMLRQC 201 (328)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~------~~v~g~D~s~~~~~~a 201 (328)
|+.++...++.|++.+... +.+.++.++||++||||..+..+.+.-.. .+|+++|+|+.|+..+
T Consensus 77 ND~mSlGiHRlWKd~~v~~----------L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vg 146 (296)
T KOG1540|consen 77 NDAMSLGIHRLWKDMFVSK----------LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVG 146 (296)
T ss_pred HHHhhcchhHHHHHHhhhc----------cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHH
Confidence 6789999999999998865 77788899999999999999988887544 6899999999999999
Q ss_pred HHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCC-CCc---
Q 020307 202 YDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT-SST--- 277 (328)
Q Consensus 202 ~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~-~~~--- 277 (328)
+++..+.++....++.|+++|++++||++++||+.++.+.|..++|+.+.|+|++|+|||||++.+.+++.-. ...
T Consensus 147 kqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~f 226 (296)
T KOG1540|consen 147 KQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWF 226 (296)
T ss_pred HHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHH
Confidence 9998776653344599999999999999999999999999999999999999999999999999999987652 111
Q ss_pred ---------chhhHHHHHhh-------hccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 278 ---------SLTGRVLRERI-------LQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 278 ---------~~~~~~~~~~~-------~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
+.+++.+.... .....+.+.+++..+.+++||..+.
T Consensus 227 y~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 227 YDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 22222222211 1445578899999999999998876
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-24 Score=191.73 Aligned_cols=170 Identities=23% Similarity=0.438 Sum_probs=124.1
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCccccCccceeeeecccCCC-----CccCCcchhhhccCCchHHHH
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLK-----DYTEVKPASTELFRSPFVSFL 134 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~~~~-----~y~~~~~~~~~~~~~~~~~~~ 134 (328)
.|+||+|++++.... ..++|.++|+++..++||+++++..... +..++...++.
T Consensus 2 ~~~CP~C~~~l~~~~-----------~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~d~~~~~~ar~~---------- 60 (272)
T PRK11088 2 SYQCPLCHQPLTLEE-----------NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPGDNKEMMQARRA---------- 60 (272)
T ss_pred cccCCCCCcchhcCC-----------CEEEcCCCCCCccccCceEEeccccccCCCCCCcCHHHHHHHHH----------
Confidence 478999999995532 5899999888889999999999742221 22222222222
Q ss_pred HHhhHHhhhhcCCCCCcchh---hhcc---ccCCCeEEEEcCCcCHHHHHHHHhCCC---ceEEEEeCCHHHHHHHHHHH
Q 020307 135 YERGWRQNFNRSGFPGPDEE---EYFK---SAQGGLLVDVSCGSGLFSRKFAKSGTY---SGVVALDFSENMLRQCYDFI 205 (328)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~---~~l~---~~~~~~vLDiGcG~G~~~~~l~~~~~~---~~v~g~D~s~~~~~~a~~~~ 205 (328)
+...+++.+... ..+. ..+..+|||+|||+|.++..+++..+. .+++|+|+|+.+++.|+++
T Consensus 61 --------fl~~g~y~~l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~- 131 (272)
T PRK11088 61 --------FLDAGHYQPLRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR- 131 (272)
T ss_pred --------HHHCCChHHHHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-
Confidence 222232222222 1111 124578999999999999999887542 3789999999999999875
Q ss_pred HhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 206 KQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 206 ~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
.+++.+..+|+.++|+++++||+|++... | ..++++.|+|||||++++.++...
T Consensus 132 -------~~~~~~~~~d~~~lp~~~~sfD~I~~~~~------~-~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 132 -------YPQVTFCVASSHRLPFADQSLDAIIRIYA------P-CKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred -------CCCCeEEEeecccCCCcCCceeEEEEecC------C-CCHHHHHhhccCCCEEEEEeCCCc
Confidence 56788999999999999999999998654 2 236899999999999999887643
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-22 Score=172.01 Aligned_cols=183 Identities=25% Similarity=0.378 Sum_probs=140.0
Q ss_pred HHHHHhhHHhhhhcCCCCCcchhhhccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCc
Q 020307 132 SFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNT 210 (328)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~ 210 (328)
+......|++.... .+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.+++++...+
T Consensus 26 ~~~~~~~~~~~~l~----------~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~- 94 (231)
T TIGR02752 26 SFQRHKKWRKDTMK----------RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG- 94 (231)
T ss_pred cCCchHHHHHHHHH----------hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-
Confidence 33445566655553 255667889999999999999999987 456799999999999999999887654
Q ss_pred CCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCC-------------c
Q 020307 211 ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS-------------T 277 (328)
Q Consensus 211 ~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-------------~ 277 (328)
..++.++.+|+..+++++++||+|++..+++|++++..+++++.++|||||++++.+....... .
T Consensus 95 --~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (231)
T TIGR02752 95 --LHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIM 172 (231)
T ss_pred --CCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChh
Confidence 4679999999998888888999999999999999999999999999999999998876543210 0
Q ss_pred chhhHHH-------HHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE--eCcEEEEEEeC
Q 020307 278 SLTGRVL-------RERILQNYNYLTEEEIEDLCTSCGLTNYTSKV--QQSFIMFAAQK 327 (328)
Q Consensus 278 ~~~~~~~-------~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~--~~~~~~~~a~k 327 (328)
+.....+ .........+++.++++++++++||++++... .+...+++++|
T Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 173 PLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 1100000 00112344678999999999999999876543 35557788776
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=182.97 Aligned_cols=151 Identities=19% Similarity=0.259 Sum_probs=120.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||||||+|.++..+++.+. +|+|+|+++++++.|+++....+. ..++.++++|++++++.+++||+|++.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~~~--~~~i~~~~~dae~l~~~~~~FD~Vi~~ 205 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMDPV--TSTIEYLCTTAEKLADEGRKFDAVLSL 205 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCc--ccceeEEecCHHHhhhccCCCCEEEEh
Confidence 3567999999999999999998754 999999999999999987654322 347999999999988878899999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCC--cchhh-HHHHHhhh--c--cCCCCCHHHHHHHHHHCCCeEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS--TSLTG-RVLRERIL--Q--NYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--~~~~~-~~~~~~~~--~--~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
+||||++|+..+++++.++|||||.+++.+++..... ..... ..+....+ . ...+++++++.++++++||+++
T Consensus 206 ~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~ 285 (322)
T PLN02396 206 EVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVK 285 (322)
T ss_pred hHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999999999999998764110 00001 11111111 1 2358899999999999999988
Q ss_pred EE
Q 020307 313 TS 314 (328)
Q Consensus 313 ~~ 314 (328)
+.
T Consensus 286 ~~ 287 (322)
T PLN02396 286 EM 287 (322)
T ss_pred EE
Confidence 75
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=171.76 Aligned_cols=147 Identities=20% Similarity=0.296 Sum_probs=121.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||||||.|.++..+++.|. +|+|+|+++.+++.|+.+..+.+ ..+.+.+..++++....++||+|+|.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~g----v~i~y~~~~~edl~~~~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALESG----VNIDYRQATVEDLASAGGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhcc----ccccchhhhHHHHHhcCCCccEEEEh
Confidence 3688999999999999999999986 99999999999999999887764 35778888888776666899999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhh-----HHHHHhhh----ccCCCCCHHHHHHHHHHCCCe
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG-----RVLRERIL----QNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
.||||++||..+++.+.+.+||||.+++++.++.. ..+.. +.+....+ ....++.++++..++..+|++
T Consensus 132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~--ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~ 209 (243)
T COG2227 132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRTL--KAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLK 209 (243)
T ss_pred hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCH--HHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCce
Confidence 99999999999999999999999999999999762 22211 11222222 334578899999999999998
Q ss_pred EEEE
Q 020307 311 NYTS 314 (328)
Q Consensus 311 ~v~~ 314 (328)
+...
T Consensus 210 ~~~~ 213 (243)
T COG2227 210 IIDR 213 (243)
T ss_pred EEee
Confidence 7764
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-21 Score=177.41 Aligned_cols=153 Identities=20% Similarity=0.250 Sum_probs=123.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.++++....++ ..++.++.+|+.++|+++++||+|++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~--~~~v~~~~~D~~~~~~~~~~FD~V~s~ 193 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGL--SDKVSFQVADALNQPFEDGQFDLVWSM 193 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEcCcccCCCCCCCccEEEEC
Confidence 467899999999999999999875 45999999999999999998877653 467999999999999999999999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCC------CcchhhHHHHHhh--hccCCCCCHHHHHHHHHHCCCeE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTS------STSLTGRVLRERI--LQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
.+++|++|+..+++++.++|||||++++.++..... ..+.....+.... .....+.+.+++.++++++||++
T Consensus 194 ~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~ 273 (340)
T PLN02244 194 ESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQD 273 (340)
T ss_pred CchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCe
Confidence 999999999999999999999999999988754211 1111111111111 12234568999999999999998
Q ss_pred EEEE
Q 020307 312 YTSK 315 (328)
Q Consensus 312 v~~~ 315 (328)
++..
T Consensus 274 v~~~ 277 (340)
T PLN02244 274 IKTE 277 (340)
T ss_pred eEee
Confidence 8754
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=166.10 Aligned_cols=153 Identities=14% Similarity=0.201 Sum_probs=122.9
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
.+...++.+|||||||+|..+..+++.. ..+|+|+|+|+.+++.|+++... ..++.+..+|+...|+++++||+
T Consensus 47 ~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~~~~~~~~~~FD~ 120 (263)
T PTZ00098 47 DIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDILKKDFPENTFDM 120 (263)
T ss_pred hCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCcccCCCCCCCeEE
Confidence 3556788899999999999999888763 45999999999999999987654 35799999999988888899999
Q ss_pred EEeccccccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHh-hhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 236 VHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER-ILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 236 i~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
|++..+++|++ ++..+++++.++|||||++++.++..... ..+ ...+... ......+.+.+++.++++++||+++
T Consensus 121 V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 198 (263)
T PTZ00098 121 IYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKI-ENW-DEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNV 198 (263)
T ss_pred EEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccc-cCc-HHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCee
Confidence 99999999997 78899999999999999999998765421 112 1112111 1123567799999999999999988
Q ss_pred EEEE
Q 020307 313 TSKV 316 (328)
Q Consensus 313 ~~~~ 316 (328)
+...
T Consensus 199 ~~~d 202 (263)
T PTZ00098 199 VAKD 202 (263)
T ss_pred eEEe
Confidence 8543
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=161.36 Aligned_cols=139 Identities=27% Similarity=0.418 Sum_probs=110.7
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|||+|||+|.++..+++.+. +++|+|+++.+++. . .......+....+.++++||+|++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~fD~i~~ 84 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK--R-----------NVVFDNFDAQDPPFPDGSFDLIIC 84 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH--T-----------TSEEEEEECHTHHCHSSSEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh--h-----------hhhhhhhhhhhhhccccchhhHhh
Confidence 45688999999999999999988876 99999999999887 1 233444444455566889999999
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH-hh-hccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-RI-LQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
+.+|+|++|+..+|+++.++|||||++++.+++........ ...+.. .. ..|..+++.++++.+++++||++++
T Consensus 85 ~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 85 NDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRS-FLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp ESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHH-HHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhH-HHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999999999864211111 111111 11 1678899999999999999999887
|
... |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=162.64 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=123.3
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
...++.+|||+|||+|..+..+++. ++..+|+|+|+++.+++.|+++....+ ..++.++.+|++.+++++++||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g---~~~v~~~~~d~~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG---YTNVEFRLGEIEALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC---CCCEEEEEcchhhCCCCCCceeEE
Confidence 4557889999999999988777665 555689999999999999999887765 458899999999999888899999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
++..+++|++++..+++++.++|||||++++.+..........+..............++.+++.++++++||..++...
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence 99999999999999999999999999999998865443222221111111111223457889999999999998876533
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=165.35 Aligned_cols=144 Identities=22% Similarity=0.311 Sum_probs=117.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|.++..+++..+..+++++|+|+++++.|+++.. ..++.++.+|++++++++++||+|++..
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~------~~~i~~i~gD~e~lp~~~~sFDvVIs~~ 186 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIIEGDAEDLPFPTDYADRYVSAG 186 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh------ccCCeEEeccHHhCCCCCCceeEEEEcC
Confidence 5679999999999999988887555689999999999999998753 3467899999999998889999999999
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
+++|++++...++++.++|||||++++..+.... .+..+.+.. ....+.+.+++.++++++||+.++...
T Consensus 187 ~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~---~~~~r~~~~---~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 187 SIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPT---FWLSRFFAD---VWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred hhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcc---hhHHHHhhh---hhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 9999999999999999999999999887654321 111111111 122356899999999999999887644
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-20 Score=164.56 Aligned_cols=157 Identities=16% Similarity=0.211 Sum_probs=122.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCccceEEe
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~i~~ 238 (328)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+++++.|+++....++ ..++.++++|+.+++ +.+++||+|++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~g~--~~~v~~~~~d~~~l~~~~~~~fD~V~~ 118 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAKGV--SDNMQFIHCAAQDIAQHLETPVDLILF 118 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC--ccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence 3467999999999999999999875 999999999999999999887654 467899999987764 55789999999
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcc-hhh---HHHHHhh-------hccCCCCCHHHHHHHHHHC
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTS-LTG---RVLRERI-------LQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~~---~~~~~~~-------~~~~~~~~~~~l~~ll~~~ 307 (328)
..+++|+++|..+++++.++|||||++++..++....... .+. ....... ......++++++.++++++
T Consensus 119 ~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~a 198 (255)
T PRK11036 119 HAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEA 198 (255)
T ss_pred hhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHC
Confidence 9999999999999999999999999999988775421100 000 0000000 0123468899999999999
Q ss_pred CCeEEEEEEeCcE
Q 020307 308 GLTNYTSKVQQSF 320 (328)
Q Consensus 308 Gf~~v~~~~~~~~ 320 (328)
||+++.......|
T Consensus 199 Gf~~~~~~gi~~~ 211 (255)
T PRK11036 199 GWQIMGKTGVRVF 211 (255)
T ss_pred CCeEeeeeeEEEE
Confidence 9999875443344
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-20 Score=160.14 Aligned_cols=175 Identities=21% Similarity=0.222 Sum_probs=122.1
Q ss_pred hHHHHHHhhHHhhhhcCCCCCcchhhhcc-ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc
Q 020307 130 FVSFLYERGWRQNFNRSGFPGPDEEEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD 208 (328)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~ 208 (328)
.+++..+..|++..... +.. ..++.+|||+|||+|.++..+++.. ..+|+|+|+|++|++.|+++
T Consensus 28 ~~s~g~~~~wr~~~~~~---------l~~~~~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~---- 93 (226)
T PRK05785 28 FISFNQDVRWRAELVKT---------ILKYCGRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA---- 93 (226)
T ss_pred hccCCCcHHHHHHHHHH---------HHHhcCCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc----
Confidence 34444556677655432 111 1346799999999999999999885 34999999999999999863
Q ss_pred CcCCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC-CCCcc---------
Q 020307 209 NTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY-TSSTS--------- 278 (328)
Q Consensus 209 ~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~-~~~~~--------- 278 (328)
..++++|++.+|+++++||+|++..+++|++|+.++++++.|+|||.. .+.+...+ .....
T Consensus 94 -------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~--~ile~~~p~~~~~~~~~~~y~~~ 164 (226)
T PRK05785 94 -------DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV--GFIAMGKPDNVIKRKYLSFYLRY 164 (226)
T ss_pred -------cceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce--EEEEeCCCCcHHHHHHHHHHHHH
Confidence 135789999999999999999999999999999999999999999942 22232221 11111
Q ss_pred ---hhhHHHHH-------hhhccCCCCCHHHHHHHHHHC-CCeEEEEEEeCcEEEEEEeC
Q 020307 279 ---LTGRVLRE-------RILQNYNYLTEEEIEDLCTSC-GLTNYTSKVQQSFIMFAAQK 327 (328)
Q Consensus 279 ---~~~~~~~~-------~~~~~~~~~~~~~l~~ll~~~-Gf~~v~~~~~~~~~~~~a~k 327 (328)
+++..+.. .......+.+.+++.++++++ ++...+....+...+++++|
T Consensus 165 ~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 165 IMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYADIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHhCceEEEEccccEEEEEEEee
Confidence 11111110 111334577889999999995 34333334456668888877
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.6e-20 Score=166.29 Aligned_cols=156 Identities=19% Similarity=0.226 Sum_probs=117.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.++ ..|+|+|+|+.++..++......+. ..++.++.+|++++|+ +++||+|
T Consensus 118 l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~~--~~~i~~~~~d~e~lp~-~~~FD~V 193 (322)
T PRK15068 118 LSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLGN--DQRAHLLPLGIEQLPA-LKAFDTV 193 (322)
T ss_pred hCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcCC--CCCeEEEeCCHHHCCC-cCCcCEE
Confidence 4445678999999999999999999875 3599999999998765443222110 3479999999999988 7889999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcc-hhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTS-LTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
++..+++|+.+|..+|++++++|||||.+++.+......... .....-...........+.+++..+++++||+.++..
T Consensus 194 ~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~ 273 (322)
T PRK15068 194 FSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIV 273 (322)
T ss_pred EECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEE
Confidence 999999999999999999999999999999987544322111 1011111112223345689999999999999988754
Q ss_pred E
Q 020307 316 V 316 (328)
Q Consensus 316 ~ 316 (328)
.
T Consensus 274 ~ 274 (322)
T PRK15068 274 D 274 (322)
T ss_pred e
Confidence 3
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-19 Score=157.09 Aligned_cols=170 Identities=24% Similarity=0.347 Sum_probs=132.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|.++..++..++ ..+++++|+++.+++.+++++...+. ..++.++.+|+..+++..++||+
T Consensus 47 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~D~ 124 (239)
T PRK00216 47 LGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL--SGNVEFVQGDAEALPFPDNSFDA 124 (239)
T ss_pred hCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc--ccCeEEEecccccCCCCCCCccE
Confidence 3344678999999999999999998875 57999999999999999998765432 45789999999888877789999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCc-chhhHHH--------HH-----------hhhccCCCC
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVL--------RE-----------RILQNYNYL 295 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~--------~~-----------~~~~~~~~~ 295 (328)
|++..+++|+.++..+++++.++|+|||++++.+........ ......+ .. .......++
T Consensus 125 I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (239)
T PRK00216 125 VTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFP 204 (239)
T ss_pred EEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999998765432210 0000000 00 001113467
Q ss_pred CHHHHHHHHHHCCCeEEEEEE--eCcEEEEEEeCC
Q 020307 296 TEEEIEDLCTSCGLTNYTSKV--QQSFIMFAAQKP 328 (328)
Q Consensus 296 ~~~~l~~ll~~~Gf~~v~~~~--~~~~~~~~a~k~ 328 (328)
+.+++.++++++||+.+.... .+.+.+++|+||
T Consensus 205 ~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 205 DQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred CHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence 899999999999999887644 366789999987
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=160.88 Aligned_cols=146 Identities=18% Similarity=0.170 Sum_probs=113.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++ .++.++.+|++.++ ++++||+|
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~----------~~~~~~~~d~~~~~-~~~~fD~v 93 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE----------RGVDARTGDVRDWK-PKPDTDVV 93 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh----------cCCcEEEcChhhCC-CCCCceEE
Confidence 44557789999999999999999998777799999999999999875 25789999998775 56799999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCC-CCcchhhH-----HHHHhhh-----ccCCCCCHHHHHHHHH
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT-SSTSLTGR-----VLRERIL-----QNYNYLTEEEIEDLCT 305 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~-~~~~~~~~-----~~~~~~~-----~~~~~~~~~~l~~ll~ 305 (328)
+++.++||++++..+++++.++|||||++++..+.... ........ .|..... ....+.+.+++.++|+
T Consensus 94 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (255)
T PRK14103 94 VSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLT 173 (255)
T ss_pred EEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999998654321 11111010 0111110 1234578999999999
Q ss_pred HCCCeEEE
Q 020307 306 SCGLTNYT 313 (328)
Q Consensus 306 ~~Gf~~v~ 313 (328)
++||++..
T Consensus 174 ~aGf~v~~ 181 (255)
T PRK14103 174 DAGCKVDA 181 (255)
T ss_pred hCCCeEEE
Confidence 99997544
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=163.11 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=116.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++++|||||||+|.++..++..++ ..|+|+|+|+.++.+++....... ...++.+...+++++|.. .+||+|
T Consensus 117 l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~--~~~~v~~~~~~ie~lp~~-~~FD~V 192 (314)
T TIGR00452 117 LSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLD--NDKRAILEPLGIEQLHEL-YAFDTV 192 (314)
T ss_pred cCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhc--cCCCeEEEECCHHHCCCC-CCcCEE
Confidence 3445688999999999999999988875 369999999999876543221111 045788888999888754 489999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchh-hHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT-GRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
++.++++|+++|..+|++++++|||||.+++.+........... ..............++..++..+++++||+.++..
T Consensus 193 ~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 193 FSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred EEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEE
Confidence 99999999999999999999999999999998765432221110 01111122233456799999999999999999854
Q ss_pred E
Q 020307 316 V 316 (328)
Q Consensus 316 ~ 316 (328)
.
T Consensus 273 ~ 273 (314)
T TIGR00452 273 D 273 (314)
T ss_pred e
Confidence 3
|
Known examples to date are restricted to the proteobacteria. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-20 Score=151.72 Aligned_cols=143 Identities=20% Similarity=0.391 Sum_probs=111.7
Q ss_pred CCCeEEEEcCCcCHHHHHHH-HhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCccceEE
Q 020307 161 QGGLLVDVSCGSGLFSRKFA-KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVH 237 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~i~ 237 (328)
++.+|||+|||+|.++..++ +.++..+++|+|+|+.+++.|+++++..+ ..++.|+++|+.+++ ++ +.||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~---~~ni~~~~~d~~~l~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG---LDNIEFIQGDIEDLPQELE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT---STTEEEEESBTTCGCGCSS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc---ccccceEEeehhccccccC-CCeeEEE
Confidence 56799999999999999999 55677899999999999999999988776 458999999999877 55 7999999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHH--Hhhh-ccC-CCCCHHHHHHHHHHCC
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR--ERIL-QNY-NYLTEEEIEDLCTSCG 308 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~--~~~~-~~~-~~~~~~~l~~ll~~~G 308 (328)
+..+++|+.++..+++++.++|++||++++.++.........+.+... .... .+. .. +.+++..+++++|
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ag 152 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDELPEQLEELMNLYSEVWSMIYIGN-DKEEWKYILEEAG 152 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHHHHHHCC----CCCGHHHHHHHTT
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHHHHHHHHHhhhhhccc-CHHHHHHHHHhcC
Confidence 999999999999999999999999999999998722111111111111 1111 111 12 7888999999987
|
... |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.3e-20 Score=137.44 Aligned_cols=95 Identities=34% Similarity=0.579 Sum_probs=84.2
Q ss_pred EEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccccC
Q 020307 166 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW 245 (328)
Q Consensus 166 LDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~ 245 (328)
||+|||+|.++..+++. +..+++|+|+++++++.++++... .++.+..+|+..+|+++++||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHhCccccccccccccccceeec
Confidence 89999999999999999 455999999999999999998753 35669999999999999999999999999999
Q ss_pred CChHHHHHHHHhcccCCcEEEE
Q 020307 246 PSPSNAVAEISRILRSGGVFVG 267 (328)
Q Consensus 246 ~d~~~~l~~~~r~LkpgG~l~i 267 (328)
+++..+++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-19 Score=169.30 Aligned_cols=150 Identities=15% Similarity=0.226 Sum_probs=121.6
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|..+..+++.. +.+|+|+|+|+.+++.|+++.... ..++.+..+|+..+++++++||+|
T Consensus 262 ~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~----~~~v~~~~~d~~~~~~~~~~fD~I 336 (475)
T PLN02336 262 LDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR----KCSVEFEVADCTKKTYPDNSFDVI 336 (475)
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC----CCceEEEEcCcccCCCCCCCEEEE
Confidence 344567899999999999999898874 559999999999999998876532 457899999999888888899999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCc-chhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
++..+++|++++..+++++.++|||||++++.++....... +.....+. ......++.+++.++++++||+++..
T Consensus 337 ~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 337 YSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIK---QRGYDLHDVQAYGQMLKDAGFDDVIA 412 (475)
T ss_pred EECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHH---hcCCCCCCHHHHHHHHHHCCCeeeee
Confidence 99999999999999999999999999999999876542211 11111111 12345788999999999999998864
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-19 Score=153.53 Aligned_cols=144 Identities=18% Similarity=0.191 Sum_probs=118.2
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecccc
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 242 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl 242 (328)
++|||||||+|.++..+++.++..+++|+|+|+++++.+++++...++ ..++.++..|+...|++ ++||+|++..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl--~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL--QGRIRIFYRDSAKDPFP-DTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC--CcceEEEecccccCCCC-CCCCEeehHHHH
Confidence 379999999999999999987667999999999999999999887665 56889999999766654 589999999999
Q ss_pred ccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE
Q 020307 243 HCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 243 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
+|++++..+++++.++|||||++++.++.... ..+. . .........+.+++.++++++||++++...
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~-~-----~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADFIANL-LSAI-E-----HEETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEccccc-Cccc-c-----ccccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 99999999999999999999999998875321 0000 0 001223367899999999999999987543
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=148.59 Aligned_cols=143 Identities=20% Similarity=0.214 Sum_probs=112.0
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccc
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 234 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD 234 (328)
+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....+ ..++.+...|+..++++ ++||
T Consensus 24 ~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~~~~-~~fD 97 (197)
T PRK11207 24 EAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAEN---LDNLHTAVVDLNNLTFD-GEYD 97 (197)
T ss_pred HhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcC---CCcceEEecChhhCCcC-CCcC
Confidence 345555678999999999999999999875 99999999999999999887765 34688999999877764 5799
Q ss_pred eEEeccccccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 235 AVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 235 ~i~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
+|++..+++|++ +...+++++.++|||||++++.+....... +. .......++++++.+.++ ||+++
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~-~~--------~~~~~~~~~~~el~~~~~--~~~~~ 166 (197)
T PRK11207 98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY-PC--------TVGFPFAFKEGELRRYYE--GWEMV 166 (197)
T ss_pred EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCC-CC--------CCCCCCccCHHHHHHHhC--CCeEE
Confidence 999999999886 456899999999999999766543322110 10 001235578999999997 89887
Q ss_pred EE
Q 020307 313 TS 314 (328)
Q Consensus 313 ~~ 314 (328)
..
T Consensus 167 ~~ 168 (197)
T PRK11207 167 KY 168 (197)
T ss_pred Ee
Confidence 74
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.4e-19 Score=155.91 Aligned_cols=144 Identities=24% Similarity=0.316 Sum_probs=116.2
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++. ....++++|++.+|+++++||+|
T Consensus 38 l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 38 LPQRKFTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKD--------AADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred cCccCCCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhC--------CCCCEEEcCcccCcCCCCcEEEE
Confidence 3334567999999999999999988764 9999999999999998862 34568899999999988999999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHh--hhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER--ILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
+++.++++++|+..+++++.++|||||.++++++.... .+.+.+.+... .+....+++.+++..++...|++..
T Consensus 108 ~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~--~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 183 (251)
T PRK10258 108 WSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGS--LPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQHH 183 (251)
T ss_pred EECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCc--hHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCceee
Confidence 99999999999999999999999999999999876532 22222222221 1234568899999999999998643
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=150.24 Aligned_cols=154 Identities=29% Similarity=0.364 Sum_probs=121.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.++++.... ..++.+..+|+..+++++++||+
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~~~~D~ 90 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL----GPNVEFVRGDADGLPFPDGSFDA 90 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC----CCceEEEecccccCCCCCCCceE
Confidence 455678899999999999999999875 5679999999999999998873321 46799999999888888899999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCC-----CcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCe
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTS-----STSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
|++..+++|++++..+++++.++|||||.+++.++..... ......+............++..++.++++++||+
T Consensus 91 v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 170 (241)
T PRK08317 91 VRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLT 170 (241)
T ss_pred EEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999988643211 11121222222222334556678899999999998
Q ss_pred EEEE
Q 020307 311 NYTS 314 (328)
Q Consensus 311 ~v~~ 314 (328)
.+..
T Consensus 171 ~~~~ 174 (241)
T PRK08317 171 DIEV 174 (241)
T ss_pred ceeE
Confidence 7764
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-19 Score=156.27 Aligned_cols=151 Identities=14% Similarity=0.187 Sum_probs=117.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
.++.+|||+|||+|.++..+++.. ++.+++|+|+|+.|++.|++++...+. ..++.++++|+..++++ .+|+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~--~~d~v~ 127 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS--EIPVEILCNDIRHVEIK--NASMVI 127 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEEECChhhCCCC--CCCEEe
Confidence 356799999999999999998863 567999999999999999998876432 45789999999988764 589999
Q ss_pred eccccccCCC--hHHHHHHHHhcccCCcEEEEEEeccCCC--CcchhhHHHH-----------------HhhhccCCCCC
Q 020307 238 AGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTS--STSLTGRVLR-----------------ERILQNYNYLT 296 (328)
Q Consensus 238 ~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~--~~~~~~~~~~-----------------~~~~~~~~~~~ 296 (328)
+..+++|+++ +..+++++.++|||||.+++.++..... ..+.+...+. .....+...++
T Consensus 128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s 207 (239)
T TIGR00740 128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDS 207 (239)
T ss_pred eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCC
Confidence 9999999964 4789999999999999999998754311 1111111110 01113456789
Q ss_pred HHHHHHHHHHCCCeEEEE
Q 020307 297 EEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 297 ~~~l~~ll~~~Gf~~v~~ 314 (328)
.+++..+++++||..++.
T Consensus 208 ~~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 208 IETHKARLKNVGFSHVEL 225 (239)
T ss_pred HHHHHHHHHHcCCchHHH
Confidence 999999999999986653
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-18 Score=148.20 Aligned_cols=166 Identities=22% Similarity=0.306 Sum_probs=126.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++.++. .+++++|+++.+++.++++... ..++.+..+|+.+.++++++||+
T Consensus 35 ~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~D~ 109 (223)
T TIGR01934 35 IGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-----PLNIEFIQADAEALPFEDNSFDA 109 (223)
T ss_pred hccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-----CCCceEEecchhcCCCCCCcEEE
Confidence 33446789999999999999999988764 6899999999999999887651 45789999999988887789999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCc-chhhHHHHH--------h-----------hhccCCCC
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVLRE--------R-----------ILQNYNYL 295 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~--------~-----------~~~~~~~~ 295 (328)
|++..+++|++++..+++++.+.|+|||++++.+........ ....+.+.. . ......++
T Consensus 110 i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (223)
T TIGR01934 110 VTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFP 189 (223)
T ss_pred EEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCC
Confidence 999999999999999999999999999999998865432110 000000000 0 01123467
Q ss_pred CHHHHHHHHHHCCCeEEEEEE--eCcEEEEEEeC
Q 020307 296 TEEEIEDLCTSCGLTNYTSKV--QQSFIMFAAQK 327 (328)
Q Consensus 296 ~~~~l~~ll~~~Gf~~v~~~~--~~~~~~~~a~k 327 (328)
+.+++..+++++||+.+.... .+...+++++|
T Consensus 190 ~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 190 SQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred CHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 899999999999998766433 23335677764
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=152.92 Aligned_cols=151 Identities=14% Similarity=0.202 Sum_probs=116.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHh--CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
.++.+|||+|||+|..+..+++. .++.+++|+|+|+.|++.|++++...+. ..++.++++|+..+|++ .+|+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~--~~~v~~~~~d~~~~~~~--~~D~vv 130 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA--PTPVDVIEGDIRDIAIE--NASMVV 130 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEEeCChhhCCCC--CCCEEe
Confidence 36789999999999999888873 4677999999999999999999877553 45799999999888764 599999
Q ss_pred eccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCC--CCcchhhHHHHH-----------------hhhccCCCCC
Q 020307 238 AGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT--SSTSLTGRVLRE-----------------RILQNYNYLT 296 (328)
Q Consensus 238 ~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~--~~~~~~~~~~~~-----------------~~~~~~~~~~ 296 (328)
++.+++|+++. ..+++++.++|||||.+++.+..... ...++....+.. .........+
T Consensus 131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~ 210 (247)
T PRK15451 131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDS 210 (247)
T ss_pred hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCC
Confidence 99999999754 57899999999999999998855331 112211111110 0112334578
Q ss_pred HHHHHHHHHHCCCeEEEE
Q 020307 297 EEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 297 ~~~l~~ll~~~Gf~~v~~ 314 (328)
+++..++|+++||+.+..
T Consensus 211 ~~~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 211 VETHKARLHKAGFEHSEL 228 (247)
T ss_pred HHHHHHHHHHcCchhHHH
Confidence 999999999999987663
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-19 Score=152.44 Aligned_cols=144 Identities=26% Similarity=0.373 Sum_probs=113.2
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCC----CeEEEEecCCCCCCCCCccceEE
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS----NLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~----~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
|.+|||+|||+|.++..|++.|. +|+|+|+++.+++.|+......-. ... ++.+.+.|.+.+ .+.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~dP~-~~~~~~y~l~~~~~~~E~~---~~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMDPV-LEGAIAYRLEYEDTDVEGL---TGKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcCch-hccccceeeehhhcchhhc---ccccceee
Confidence 57899999999999999999987 999999999999999998443211 112 366777777765 34599999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcch-----hhHHHHHhhh----ccCCCCCHHHHHHHHHHCC
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL-----TGRVLRERIL----QNYNYLTEEEIEDLCTSCG 308 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-----~~~~~~~~~~----~~~~~~~~~~l~~ll~~~G 308 (328)
|..|+||+.||..+++.+.++|||||.+++++.++. ...| ..+......| ....+.+++++..+++..|
T Consensus 164 csevleHV~dp~~~l~~l~~~lkP~G~lfittinrt--~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~ 241 (282)
T KOG1270|consen 164 CSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT--ILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANG 241 (282)
T ss_pred eHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh--HHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcC
Confidence 999999999999999999999999999999998875 1222 1222222222 2235889999999999999
Q ss_pred CeEEE
Q 020307 309 LTNYT 313 (328)
Q Consensus 309 f~~v~ 313 (328)
+++..
T Consensus 242 ~~v~~ 246 (282)
T KOG1270|consen 242 AQVND 246 (282)
T ss_pred cchhh
Confidence 98665
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=134.41 Aligned_cols=106 Identities=26% Similarity=0.414 Sum_probs=89.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC-CCCCCCCCccceEEec
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~i~~~ 239 (328)
|+.+|||+|||+|.++..+++..+..+++|+|+|+.+++.+++++...+. ..++.++++|+ ..... .+.||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~~~~-~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL--SDRITFVQGDAEFDPDF-LEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT--TTTEEEEESCCHGGTTT-SSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEEECccccCccc-CCCCCEEEEC
Confidence 57899999999999999999965677999999999999999999955443 68999999999 33333 4569999999
Q ss_pred c-ccccC---CChHHHHHHHHhcccCCcEEEEEE
Q 020307 240 A-ALHCW---PSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 240 ~-vl~h~---~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
. +++++ .+...+++++.+.|+|||++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9 55544 345789999999999999999976
|
... |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=146.15 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=126.8
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
.+...+|.+|||||||.|.++..+++.. +.+|+|+++|+++.+.+++++...|+ ..++++...|...+. +.||-
T Consensus 67 kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl--~~~v~v~l~d~rd~~---e~fDr 140 (283)
T COG2230 67 KLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGL--EDNVEVRLQDYRDFE---EPFDR 140 (283)
T ss_pred hcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCC--CcccEEEeccccccc---cccce
Confidence 3678899999999999999999999996 67999999999999999999999886 568999999987764 45999
Q ss_pred EEeccccccCCC--hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 236 VHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 236 i~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
|++..++||+.. -..+++.+.++|+|||++++.+.............++.....+.-...+.+++.+..+++||.+..
T Consensus 141 IvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~ 220 (283)
T COG2230 141 IVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLD 220 (283)
T ss_pred eeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEeh
Confidence 999999999976 789999999999999999998877654222111233333333445566789999999999999887
Q ss_pred EEE
Q 020307 314 SKV 316 (328)
Q Consensus 314 ~~~ 316 (328)
...
T Consensus 221 ~~~ 223 (283)
T COG2230 221 VES 223 (283)
T ss_pred Hhh
Confidence 543
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=148.24 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=110.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...+|.+|||||||.|.++..+++.. +.+|+|+.+|++..+.+++++...++ ..++.+...|..+++. +||.|
T Consensus 58 ~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl--~~~v~v~~~D~~~~~~---~fD~I 131 (273)
T PF02353_consen 58 LGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGL--EDRVEVRLQDYRDLPG---KFDRI 131 (273)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTS--SSTEEEEES-GGG------S-SEE
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEeeccccCC---CCCEE
Confidence 567799999999999999999999994 45999999999999999999998886 6789999999987653 89999
Q ss_pred EeccccccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCcch----hhHHHHHhhhccCCCCCHHHHHHHHHHCCCe
Q 020307 237 HAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL----TGRVLRERILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 237 ~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
++..++||+. +...+++++.++|||||++++............ ...++.....+.....+.+++...+++.||+
T Consensus 132 vSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~ 211 (273)
T PF02353_consen 132 VSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLE 211 (273)
T ss_dssp EEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-E
T ss_pred EEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEE
Confidence 9999999995 457999999999999999998776654211110 0122322222334566789999999999999
Q ss_pred EEEEEE
Q 020307 311 NYTSKV 316 (328)
Q Consensus 311 ~v~~~~ 316 (328)
+.....
T Consensus 212 v~~~~~ 217 (273)
T PF02353_consen 212 VEDVEN 217 (273)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 887543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.1e-18 Score=149.27 Aligned_cols=155 Identities=17% Similarity=0.232 Sum_probs=115.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+....|++|||||||+|+++..++.+++ ..|+|+|++.-...+.+-.-.-.+. ...+......++++|. .+.||+|
T Consensus 111 l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~--~~~~~~lplgvE~Lp~-~~~FDtV 186 (315)
T PF08003_consen 111 LPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQ--DPPVFELPLGVEDLPN-LGAFDTV 186 (315)
T ss_pred hCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCC--CccEEEcCcchhhccc-cCCcCEE
Confidence 4455789999999999999999999985 4699999998876664322111110 2233444456788886 7899999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcc-hhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTS-LTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
+|.+||.|..+|...|+++...|+|||.+++.+......... +.-..-+...+..+...|...+..+++++||+.++..
T Consensus 187 F~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v 266 (315)
T PF08003_consen 187 FSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCV 266 (315)
T ss_pred EEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEe
Confidence 999999999999999999999999999999988765432221 1111112233345566799999999999999988853
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-17 Score=145.40 Aligned_cols=140 Identities=25% Similarity=0.397 Sum_probs=115.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|.++..+++.++..+++|+|+++.+++.++++. .+++.++.+|+...++++++||+|++.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~vi~~~ 106 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL-------SENVQFICGDAEKLPLEDSSFDLIVSNL 106 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc-------CCCCeEEecchhhCCCCCCceeEEEEhh
Confidence 357899999999999999999988778999999999999988764 2368899999999988889999999999
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
+++|+.++..+++++.++|||||.+++.++.... ...+...+. .....+++.+++.++++.+ |..+.
T Consensus 107 ~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~l~~~-f~~~~ 173 (240)
T TIGR02072 107 ALQWCDDLSQALSELARVLKPGGLLAFSTFGPGT--LHELRQSFG---QHGLRYLSLDELKALLKNS-FELLT 173 (240)
T ss_pred hhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccC--HHHHHHHHH---HhccCCCCHHHHHHHHHHh-cCCcE
Confidence 9999999999999999999999999998876432 111111111 1345678999999999998 87655
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-17 Score=146.26 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=112.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.++++ ..++.++.+|+..++ ++++||+|
T Consensus 27 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~--------~~~~~~~~~d~~~~~-~~~~fD~v 97 (258)
T PRK01683 27 VPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR--------LPDCQFVEADIASWQ-PPQALDLI 97 (258)
T ss_pred CCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh--------CCCCeEEECchhccC-CCCCccEE
Confidence 444567899999999999999999987777999999999999999886 457889999997764 45689999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHH------HHHhhh----ccCCCCCHHHHHHHHHH
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV------LRERIL----QNYNYLTEEEIEDLCTS 306 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~------~~~~~~----~~~~~~~~~~l~~ll~~ 306 (328)
+++.+++|++|+..+++++.++|||||.+++..+............. |..... ....+.+..++.+++.+
T Consensus 98 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~ 177 (258)
T PRK01683 98 FANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALAP 177 (258)
T ss_pred EEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHHh
Confidence 99999999999999999999999999999997654221111000110 111111 12345678899999999
Q ss_pred CCCeE
Q 020307 307 CGLTN 311 (328)
Q Consensus 307 ~Gf~~ 311 (328)
+|+.+
T Consensus 178 ~g~~v 182 (258)
T PRK01683 178 AACRV 182 (258)
T ss_pred CCCce
Confidence 99864
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=144.20 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=112.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHh----CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
.++.+|||+|||+|.++..+++. +++.+++|+|+|+++++.|+++.. ..++.+...+...++..+++||+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~------~~~~~~~~~~~~~l~~~~~~fD~ 132 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR------RPGVTFRQAVSDELVAEGERFDV 132 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc------cCCCeEEEEecccccccCCCccE
Confidence 46679999999999998888753 556699999999999999988643 23567777777777777789999
Q ss_pred EEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchh---hHHHH------H-hhhccCCCCCHHHHHHH
Q 020307 236 VHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLT---GRVLR------E-RILQNYNYLTEEEIEDL 303 (328)
Q Consensus 236 i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~---~~~~~------~-~~~~~~~~~~~~~l~~l 303 (328)
|+++.++||++++ ..+++++.++++ |.+++.+........... ...+. . ....+..+|+++++.++
T Consensus 133 V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~l 210 (232)
T PRK06202 133 VTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAAL 210 (232)
T ss_pred EEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHH
Confidence 9999999999986 479999999998 667776665541100000 00000 0 11244579999999999
Q ss_pred HHHCCCeEEEEEEeCcEEEE
Q 020307 304 CTSCGLTNYTSKVQQSFIMF 323 (328)
Q Consensus 304 l~~~Gf~~v~~~~~~~~~~~ 323 (328)
+++ ||++.. .....+.++
T Consensus 211 l~~-Gf~~~~-~~~~~~~~~ 228 (232)
T PRK06202 211 APQ-GWRVER-QWPFRYLLV 228 (232)
T ss_pred hhC-CCeEEe-ccceeeEEE
Confidence 999 999777 333344333
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.2e-17 Score=147.27 Aligned_cols=152 Identities=14% Similarity=0.111 Sum_probs=118.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++++|..+++++|. +.+++.+++++...++ ..++.++.+|+.+.+++ .+|+|
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl--~~rv~~~~~d~~~~~~~--~~D~v 219 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV--ADRMRGIAVDIYKESYP--EADAV 219 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc--cceEEEEecCccCCCCC--CCCEE
Confidence 4455678999999999999999999998889999997 7899999999887765 56899999999766654 36999
Q ss_pred EeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHh------hhccCCCCCHHHHHHHHHHCC
Q 020307 237 HAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER------ILQNYNYLTEEEIEDLCTSCG 308 (328)
Q Consensus 237 ~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~ll~~~G 308 (328)
++.+++|++.+. ..+|+++++.|||||++++.+........+... .+... ......+.+.+++.++|+++|
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aG 298 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFD-YLSHYILGAGMPFSVLGFKEQARYKEILESLG 298 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhh-HHHHHHHHcccccccccCCCHHHHHHHHHHcC
Confidence 999999998765 478999999999999999998755433333211 11111 011223455899999999999
Q ss_pred CeEEEE
Q 020307 309 LTNYTS 314 (328)
Q Consensus 309 f~~v~~ 314 (328)
|+.++.
T Consensus 299 f~~v~~ 304 (306)
T TIGR02716 299 YKDVTM 304 (306)
T ss_pred CCeeEe
Confidence 998863
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=135.17 Aligned_cols=152 Identities=22% Similarity=0.278 Sum_probs=116.9
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeE-EEEecCCCCC-CCCCccce
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA-LVRADVCRLP-FASGFVDA 235 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~-~~~~d~~~lp-~~~~~fD~ 235 (328)
.......|||||||+|..-..+-.. |..+|+++|+++.|-+.+.+.+.+.. ..++. |+.++.+++| ++++++|+
T Consensus 73 gk~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k---~~~~~~fvva~ge~l~~l~d~s~Dt 148 (252)
T KOG4300|consen 73 GKSGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKK---PLQVERFVVADGENLPQLADGSYDT 148 (252)
T ss_pred cccCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhcc---CcceEEEEeechhcCcccccCCeee
Confidence 3333457899999999987766533 45699999999999999999988764 56777 9999999998 88999999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhc--c----CCCCCHHHHHHHHHHCCC
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQ--N----YNYLTEEEIEDLCTSCGL 309 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~l~~ll~~~Gf 309 (328)
|++..+|..+.||.+.|+++.|+|||||++++.++... ...++.+.+...... | -..++. +..+.|+++-|
T Consensus 149 VV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~--~y~~~n~i~q~v~ep~~~~~~dGC~ltr-d~~e~Leda~f 225 (252)
T KOG4300|consen 149 VVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAG--EYGFWNRILQQVAEPLWHLESDGCVLTR-DTGELLEDAEF 225 (252)
T ss_pred EEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccc--cchHHHHHHHHHhchhhheeccceEEeh-hHHHHhhhccc
Confidence 99999999999999999999999999999999998754 122223333332222 1 123444 45577899999
Q ss_pred eEEEEEE
Q 020307 310 TNYTSKV 316 (328)
Q Consensus 310 ~~v~~~~ 316 (328)
...+.+.
T Consensus 226 ~~~~~kr 232 (252)
T KOG4300|consen 226 SIDSCKR 232 (252)
T ss_pred ccchhhc
Confidence 8776433
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-17 Score=142.53 Aligned_cols=145 Identities=20% Similarity=0.269 Sum_probs=110.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+. +++|+|+|+++++.|++++...+. ..++.+..+|+..++ ++||+|++.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~~~~---~~fD~ii~~ 126 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGRDV--AGNVEFEVNDLLSLC---GEFDIVVCM 126 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CCceEEEECChhhCC---CCcCEEEEh
Confidence 4678999999999999999998754 999999999999999999876542 247999999998875 689999999
Q ss_pred cccccCCC--hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhh-----hccCCCCCHHHHHHHHHHCCCeEE
Q 020307 240 AALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI-----LQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 240 ~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
.+++|++. +..+++++.+++++++++.+..... .... ...+.... ..+..+++.+++.++++++||+++
T Consensus 127 ~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~ 202 (219)
T TIGR02021 127 DVLIHYPASDMAKALGHLASLTKERVIFTFAPKTA---WLAF-LKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIV 202 (219)
T ss_pred hHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCch---HHHH-HHHHHhhCcCcccccceEEecHHHHHHHHHHcCceee
Confidence 99999864 4678999999998765555432111 1111 11111111 134567899999999999999988
Q ss_pred EEE
Q 020307 313 TSK 315 (328)
Q Consensus 313 ~~~ 315 (328)
...
T Consensus 203 ~~~ 205 (219)
T TIGR02021 203 REG 205 (219)
T ss_pred eee
Confidence 753
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.1e-17 Score=144.72 Aligned_cols=137 Identities=16% Similarity=0.159 Sum_probs=108.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++...+ .++.+...|+...++ +++||+|++.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~~----l~v~~~~~D~~~~~~-~~~fD~I~~~ 191 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKEN----LNIRTGLYDINSASI-QEEYDFILST 191 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC----CceEEEEechhcccc-cCCccEEEEc
Confidence 3456999999999999999999875 99999999999999999887754 278888889877665 6789999999
Q ss_pred cccccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 240 AALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 240 ~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
.+++|++ +...+++++.++|+|||++++........ .+ ........++++++++.++. |++++.
T Consensus 192 ~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~-~~--------~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 192 VVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTED-YP--------CPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccc-CC--------CCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 9999986 44688999999999999977765433211 00 01123456899999999975 887764
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-17 Score=135.48 Aligned_cols=141 Identities=19% Similarity=0.290 Sum_probs=112.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CC-CCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-FASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-~~~~~fD~i~ 237 (328)
.++.+|||+|||.|.++..|.+.- +.+..|+|++++.+..+.++ .+.++++|++. ++ |++++||.|+
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~f~d~sFD~VI 80 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLADFPDQSFDYVI 80 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhhCCCCCccEEe
Confidence 468999999999999999999863 56899999999999888753 67899999954 44 8899999999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHH-HHh------------hhccCCCCCHHHHHHHH
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVL-RER------------ILQNYNYLTEEEIEDLC 304 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~~~l~~ll 304 (328)
++.+|+++.+|..+|+|+.|+ |...+++.||....-..+ ..+ .++ ...+.+++|..+++++.
T Consensus 81 lsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~--~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc 155 (193)
T PF07021_consen 81 LSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRL--QLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLC 155 (193)
T ss_pred hHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHH--HHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHH
Confidence 999999999999999999776 557788887753111111 111 111 12677899999999999
Q ss_pred HHCCCeEEEEEE
Q 020307 305 TSCGLTNYTSKV 316 (328)
Q Consensus 305 ~~~Gf~~v~~~~ 316 (328)
++.|+++++...
T Consensus 156 ~~~~i~I~~~~~ 167 (193)
T PF07021_consen 156 RELGIRIEERVF 167 (193)
T ss_pred HHCCCEEEEEEE
Confidence 999999998644
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=135.30 Aligned_cols=140 Identities=15% Similarity=0.152 Sum_probs=107.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++++. +|+|+|+|+.+++.++++....++ ++.+...|+...+++ ++||+|
T Consensus 26 ~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~~~----~v~~~~~d~~~~~~~-~~fD~I 98 (195)
T TIGR00477 26 VKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKARENL----PLRTDAYDINAAALN-EDYDFI 98 (195)
T ss_pred hccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHhCC----CceeEeccchhcccc-CCCCEE
Confidence 4444567999999999999999999865 999999999999999988776542 477788888766654 579999
Q ss_pred EeccccccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 237 HAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 237 ~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
++..+++|++ +...+++++.++|||||++++.+...... .+. .+.....++++++.++++ +|+++..
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~-~~~--------~~~~~~~~~~~el~~~f~--~~~~~~~ 167 (195)
T TIGR00477 99 FSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTAD-YPC--------HMPFSFTFKEDELRQYYA--DWELLKY 167 (195)
T ss_pred EEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCC-CCC--------CCCcCccCCHHHHHHHhC--CCeEEEe
Confidence 9999999985 34689999999999999977765432211 000 012234689999999996 5887764
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-16 Score=130.73 Aligned_cols=124 Identities=21% Similarity=0.173 Sum_probs=104.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|..+..++...+..+|+|+|+++.+++.|+++.+..+ ..++.++.+|+.+++. +++||+|++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~---l~~i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG---LKNVTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC---CCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence 4789999999999999999987777899999999999999999998876 3459999999988876 77999999865
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
+.++..+++++.++|||||++++..... ...++.++.+..|+.+.+..
T Consensus 121 ----~~~~~~~l~~~~~~LkpGG~lv~~~~~~-----------------------~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 121 ----VASLSDLVELCLPLLKPGGRFLALKGRD-----------------------PEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred ----ccCHHHHHHHHHHhcCCCeEEEEEeCCC-----------------------hHHHHHHHHHhcCceEeeeE
Confidence 4578899999999999999999876321 23467888888899866643
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=139.09 Aligned_cols=150 Identities=21% Similarity=0.302 Sum_probs=115.8
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCccceEE
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVH 237 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~i~ 237 (328)
..++.+|||+|||+|.++..+.+.+. +++++|+++.+++.+++++...+ ..+.+...|+...+ ...++||+|+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~fD~Ii 119 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALESG----LKIDYRQTTAEELAAEHPGQFDVVT 119 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHcC----CceEEEecCHHHhhhhcCCCccEEE
Confidence 44678999999999999999988764 89999999999999998876543 35778888877654 3457899999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcch--hhH-HHHHh----hhccCCCCCHHHHHHHHHHCCCe
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL--TGR-VLRER----ILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~--~~~-~~~~~----~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
+..+++|++++..+++.+.++|+|||.+++..+......... ... ..... ...+..+++.+++.++++++||+
T Consensus 120 ~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 199 (233)
T PRK05134 120 CMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLE 199 (233)
T ss_pred EhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCe
Confidence 999999999999999999999999999999876543111000 000 01111 11234678999999999999999
Q ss_pred EEEE
Q 020307 311 NYTS 314 (328)
Q Consensus 311 ~v~~ 314 (328)
++..
T Consensus 200 ~v~~ 203 (233)
T PRK05134 200 VQDI 203 (233)
T ss_pred Eeee
Confidence 8875
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=137.93 Aligned_cols=148 Identities=23% Similarity=0.298 Sum_probs=116.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC-CCccceEEec
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~i~~~ 239 (328)
.+.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+ ..++.+...|+.+.+.. .++||+|++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~D~i~~~ 119 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDP---LLKIEYRCTSVEDLAEKGAKSFDVVTCM 119 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence 467999999999999999988765 79999999999999999877643 22688888998776644 3789999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHH-----HHHh----hhccCCCCCHHHHHHHHHHCCCe
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV-----LRER----ILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
++++|+.++..+++++.++|+|||.+++.+++... ..+.... .... ......+++.+++.++++++||+
T Consensus 120 ~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~ 197 (224)
T TIGR01983 120 EVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTP--KSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLR 197 (224)
T ss_pred hHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCc--hHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCe
Confidence 99999999999999999999999999988765431 1111111 1011 11233577899999999999999
Q ss_pred EEEEE
Q 020307 311 NYTSK 315 (328)
Q Consensus 311 ~v~~~ 315 (328)
+++..
T Consensus 198 i~~~~ 202 (224)
T TIGR01983 198 VKDVK 202 (224)
T ss_pred eeeee
Confidence 98754
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.8e-18 Score=128.38 Aligned_cols=97 Identities=25% Similarity=0.379 Sum_probs=66.5
Q ss_pred EEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCccceEEeccccc
Q 020307 166 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAGAALH 243 (328)
Q Consensus 166 LDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~i~~~~vl~ 243 (328)
||||||+|.++..+.+..+..+++|+|+|+.+++.+++++.... ..+......+..+.. ...++||+|++..++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 79999999999999999778899999999999998888887743 233444444433322 1125999999999999
Q ss_pred cCCChHHHHHHHHhcccCCcEE
Q 020307 244 CWPSPSNAVAEISRILRSGGVF 265 (328)
Q Consensus 244 h~~d~~~~l~~~~r~LkpgG~l 265 (328)
|++++..+++.+.++|||||+|
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=129.60 Aligned_cols=127 Identities=23% Similarity=0.269 Sum_probs=96.6
Q ss_pred EEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 020307 189 VALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT 268 (328)
Q Consensus 189 ~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~ 268 (328)
+|+|+|++|++.|+++....+.....++.++++|+.++|+++++||+|++..+++|++|+..+|+++.|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 48999999999998776532210134799999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCcc-hhh-----------HHHHH-------hhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 269 TFLRYTSSTS-LTG-----------RVLRE-------RILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 269 ~~~~~~~~~~-~~~-----------~~~~~-------~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
++........ ... ..+.. .......+.+++++.++|+++||+.++..
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~ 146 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHY 146 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE
Confidence 8875422111 000 00000 00122457899999999999999988743
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-15 Score=127.55 Aligned_cols=127 Identities=19% Similarity=0.191 Sum_probs=102.0
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.++..+++++|+++.+++.+++++...+ ..++.++.+|+.. ++ .++||+|
T Consensus 27 l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~---~~~i~~~~~d~~~-~~-~~~~D~v 101 (187)
T PRK08287 27 LELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG---CGNIDIIPGEAPI-EL-PGKADAI 101 (187)
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC---CCCeEEEecCchh-hc-CcCCCEE
Confidence 45557889999999999999999998877899999999999999999887655 3478899888742 33 3579999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
++....++ ...+++.+.+.|+|||++++..... -+.+++.+++++.||+.++
T Consensus 102 ~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~~~----------------------~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 102 FIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFILL----------------------ENLHSALAHLEKCGVSELD 153 (187)
T ss_pred EECCCccC---HHHHHHHHHHhcCCCeEEEEEEecH----------------------hhHHHHHHHHHHCCCCcce
Confidence 99876543 5678999999999999998865321 1345778899999997655
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.3e-17 Score=121.80 Aligned_cols=95 Identities=32% Similarity=0.547 Sum_probs=79.9
Q ss_pred EEEEcCCcCHHHHHHHHhC---CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec-c
Q 020307 165 LVDVSCGSGLFSRKFAKSG---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG-A 240 (328)
Q Consensus 165 vLDiGcG~G~~~~~l~~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~-~ 240 (328)
|||+|||+|..+..+.+.. +..+++|+|+|+++++.++++.... ..+++++++|+.++++.+++||+|++. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~----~~~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED----GPKVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT----TTTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc----CCceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 7999999999999999885 3469999999999999999998764 348999999999999888899999995 5
Q ss_pred ccccCCCh--HHHHHHHHhcccCCc
Q 020307 241 ALHCWPSP--SNAVAEISRILRSGG 263 (328)
Q Consensus 241 vl~h~~d~--~~~l~~~~r~LkpgG 263 (328)
+++|+.+. ..+++++.++|||||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 59998754 588999999999998
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-15 Score=129.22 Aligned_cols=140 Identities=17% Similarity=0.242 Sum_probs=103.8
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-C-CCCCCccceEEe
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-PFASGFVDAVHA 238 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-p~~~~~fD~i~~ 238 (328)
++.+|||+|||+|.++..+++.. ..+++|+|+|+++++.+++ .++.++.+|+.+ + ++++++||+|++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~----------~~~~~~~~d~~~~l~~~~~~sfD~Vi~ 81 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA----------RGVNVIQGDLDEGLEAFPDKSFDYVIL 81 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH----------cCCeEEEEEhhhcccccCCCCcCEEEE
Confidence 56799999999999999887764 4478999999999988864 256788899865 4 367789999999
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH-------------hhhccCCCCCHHHHHHHHH
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-------------RILQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~ll~ 305 (328)
.++++|++|+..+++++.|+++ .+++..++.... ......+.. ....+.++++.+++.++++
T Consensus 82 ~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~ 156 (194)
T TIGR02081 82 SQTLQATRNPEEILDEMLRVGR---HAIVSFPNFGYW--RVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCG 156 (194)
T ss_pred hhHhHcCcCHHHHHHHHHHhCC---eEEEEcCChhHH--HHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHH
Confidence 9999999999999999988765 445554432110 000000000 0113456899999999999
Q ss_pred HCCCeEEEEEE
Q 020307 306 SCGLTNYTSKV 316 (328)
Q Consensus 306 ~~Gf~~v~~~~ 316 (328)
++||++++...
T Consensus 157 ~~Gf~v~~~~~ 167 (194)
T TIGR02081 157 ELNLRILDRAA 167 (194)
T ss_pred HCCCEEEEEEE
Confidence 99999988544
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=127.29 Aligned_cols=101 Identities=15% Similarity=0.204 Sum_probs=86.7
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|.++..++..++..+|+|+|+|+.+++.++++++..+ ..++.++++|+.+++ .+++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~---~~~i~~i~~d~~~~~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG---LNNVEIVNGRAEDFQ-HEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC---CCCeEEEecchhhcc-ccCCccEEEehh
Confidence 4789999999999999999888777789999999999999998887765 457999999998874 367899999876
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+.+....++.+.++|+|||++++..
T Consensus 118 ----~~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 118 ----LASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ----hhCHHHHHHHHHHhcCCCCEEEEEc
Confidence 3456778899999999999999864
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.9e-15 Score=127.63 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=105.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC----CCCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~ 232 (328)
+...++.+|||+|||+|.++..+++..+..+|+|+|+++.|++.+.+++.. ..++.++.+|+... ++. ++
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-----~~nv~~i~~D~~~~~~~~~l~-~~ 141 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-----RKNIIPILADARKPERYAHVV-EK 141 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-----cCCcEEEECCCCCcchhhhcc-cc
Confidence 556688999999999999999999985456899999999999988776654 45788999998642 222 46
Q ss_pred cceEEeccccccCCChH---HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCC
Q 020307 233 VDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL 309 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf 309 (328)
||+|++. +++|. .+++++.++|||||+++++.+...-.... .+...+ ++..++++++||
T Consensus 142 ~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~-----------~~~~~~--~~~~~~l~~aGF 203 (226)
T PRK04266 142 VDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK-----------DPKEIF--KEEIRKLEEGGF 203 (226)
T ss_pred CCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcC-----------CHHHHH--HHHHHHHHHcCC
Confidence 9999853 34443 45899999999999999965432100000 000111 344599999999
Q ss_pred eEEEEEEeCcE----EEEEEeC
Q 020307 310 TNYTSKVQQSF----IMFAAQK 327 (328)
Q Consensus 310 ~~v~~~~~~~~----~~~~a~k 327 (328)
++++.....++ +++++++
T Consensus 204 ~~i~~~~l~p~~~~h~~~v~~~ 225 (226)
T PRK04266 204 EILEVVDLEPYHKDHAAVVARK 225 (226)
T ss_pred eEEEEEcCCCCcCCeEEEEEEc
Confidence 99987665544 6777665
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.5e-16 Score=134.40 Aligned_cols=146 Identities=18% Similarity=0.213 Sum_probs=105.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++...+. ..++.+..+|+. ..+++||+|++.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~---~~~~~fD~v~~~ 134 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGL--AGNITFEVGDLE---SLLGRFDTVVCL 134 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC--ccCcEEEEcCch---hccCCcCEEEEc
Confidence 4678999999999999999998876 799999999999999998876542 257899999853 336789999999
Q ss_pred cccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHh-----hhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 240 AALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER-----ILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 240 ~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
.+++|++++ ..+++++.+.++++++ +...+.. . .... ...+... ...+...++.+++.++++++||++.
T Consensus 135 ~~l~~~~~~~~~~~l~~l~~~~~~~~~-i~~~~~~-~-~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 210 (230)
T PRK07580 135 DVLIHYPQEDAARMLAHLASLTRGSLI-FTFAPYT-P-LLAL-LHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVV 210 (230)
T ss_pred chhhcCCHHHHHHHHHHHHhhcCCeEE-EEECCcc-H-HHHH-HHHhccccCCccCCCCccccCHHHHHHHHHHCCCceE
Confidence 999998765 4678888887654443 3322211 0 1111 1111111 1133457789999999999999988
Q ss_pred EEEE
Q 020307 313 TSKV 316 (328)
Q Consensus 313 ~~~~ 316 (328)
+...
T Consensus 211 ~~~~ 214 (230)
T PRK07580 211 RTER 214 (230)
T ss_pred eeee
Confidence 8543
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.9e-15 Score=123.01 Aligned_cols=134 Identities=16% Similarity=0.205 Sum_probs=107.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.++ +++|+|+|+.+++.+++++...+ .++.++.+|+.+.+ .++||+|
T Consensus 15 l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~--~~~fD~V 86 (179)
T TIGR00537 15 LRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNN----VGLDVVMTDLFKGV--RGKFDVI 86 (179)
T ss_pred HHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC----CceEEEEccccccc--CCcccEE
Confidence 3344567999999999999999999886 99999999999999999887643 36888999986654 4589999
Q ss_pred EeccccccCCCh---------------------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCC
Q 020307 237 HAGAALHCWPSP---------------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYL 295 (328)
Q Consensus 237 ~~~~vl~h~~d~---------------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (328)
+++..+++.++. ..+++++.++|||||.+++..+...
T Consensus 87 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~---------------------- 144 (179)
T TIGR00537 87 LFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN---------------------- 144 (179)
T ss_pred EECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------------------
Confidence 999887766542 4579999999999999999774321
Q ss_pred CHHHHHHHHHHCCCeEEEEEEeCcE
Q 020307 296 TEEEIEDLCTSCGLTNYTSKVQQSF 320 (328)
Q Consensus 296 ~~~~l~~ll~~~Gf~~v~~~~~~~~ 320 (328)
...++.+.+++.||+.......+.+
T Consensus 145 ~~~~~~~~l~~~gf~~~~~~~~~~~ 169 (179)
T TIGR00537 145 GEPDTFDKLDERGFRYEIVAERGLF 169 (179)
T ss_pred ChHHHHHHHHhCCCeEEEEEEeecC
Confidence 2568889999999988776554443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-15 Score=134.95 Aligned_cols=147 Identities=19% Similarity=0.195 Sum_probs=102.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcC--CCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~--~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.++++....... ...++.|...|+..+ +++||+|++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 577999999999999999999865 9999999999999999987653110 024678888888654 578999999
Q ss_pred ccccccCCChH--HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhc-----cCCCCCHHHHHHHHHHCCCeE
Q 020307 239 GAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQ-----NYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 239 ~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
..+++|+++.. .+++.+.+ +.+||.++...+. ...... .+.+....+. ...++++++++++++++||++
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~--~~~~~~-l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v 294 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPK--TLYYDI-LKRIGELFPGPSKATRAYLHAEADVERALKKAGWKV 294 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCc--chHHHH-HHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEE
Confidence 99999998753 45666664 4565554433221 111111 1122221111 123458999999999999998
Q ss_pred EEEEE
Q 020307 312 YTSKV 316 (328)
Q Consensus 312 v~~~~ 316 (328)
.....
T Consensus 295 ~~~~~ 299 (315)
T PLN02585 295 ARREM 299 (315)
T ss_pred EEEEE
Confidence 87543
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=130.51 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=90.7
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC-CCCC--CCCCccceEE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLP--FASGFVDAVH 237 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp--~~~~~fD~i~ 237 (328)
++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.+++++...+ ..++.++++|+ ..++ +++++||+|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~l~~~~~~~~~D~V~ 116 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG---LTNLRLLCGDAVEVLLDMFPDGSLDRIY 116 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC---CCCEEEEecCHHHHHHHHcCccccceEE
Confidence 5679999999999999999988777799999999999999999887754 46799999999 7766 6778999999
Q ss_pred eccccccCC--------ChHHHHHHHHhcccCCcEEEEEEec
Q 020307 238 AGAALHCWP--------SPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 238 ~~~vl~h~~--------d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+.....+.. ....+++++.++|||||++++.+..
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 876543221 1367899999999999999998743
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.1e-16 Score=147.97 Aligned_cols=143 Identities=21% Similarity=0.292 Sum_probs=111.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCC--CCCCCCCccc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RLPFASGFVD 234 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~--~lp~~~~~fD 234 (328)
+...++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.+++.... .+++.++++|+. .+++++++||
T Consensus 33 l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~-----~~~i~~~~~d~~~~~~~~~~~~fD 105 (475)
T PLN02336 33 LPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGH-----YKNVKFMCADVTSPDLNISDGSVD 105 (475)
T ss_pred cCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhcc-----CCceEEEEecccccccCCCCCCEE
Confidence 4444677999999999999999999865 999999999999987654221 457899999985 4677788999
Q ss_pred eEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 235 AVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 235 ~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
+|++..+++|+++. ..+++++.++|||||++++.+...... .... .......+.+...+.+++.++||...
T Consensus 106 ~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 106 LIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQS-----GDSK--RKNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred EEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC-----Cccc--ccCCCCeecChHHHHHHHHHheeccC
Confidence 99999999999874 689999999999999999987543211 0000 11123344567899999999999766
Q ss_pred E
Q 020307 313 T 313 (328)
Q Consensus 313 ~ 313 (328)
.
T Consensus 179 ~ 179 (475)
T PLN02336 179 D 179 (475)
T ss_pred C
Confidence 4
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.2e-15 Score=131.84 Aligned_cols=145 Identities=12% Similarity=0.112 Sum_probs=107.2
Q ss_pred CCCeEEEEcCCcCHHH--HHHHHhCCCceEEEEeCCHHHHHHHHHHHHh-cCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 161 QGGLLVDVSCGSGLFS--RKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-DNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~--~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
++.+|+|||||.|.++ ..++..+++.+++|+|+++++++.|++.+.. .++ ..++.|..+|+.+.+-..+.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL--~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL--SKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc--cCCcEEEECchhhcccccCCcCEEE
Confidence 6789999999988443 3344567888999999999999999999854 444 5689999999987643357899999
Q ss_pred eccccccC--CChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 238 AGAALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 238 ~~~vl~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
+. +++++ +++.++++.+.+.|+|||++++-.... .+.+ .+...++++++ ||++..+.
T Consensus 201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G--------~r~~------LYp~v~~~~~~------gf~~~~~~ 259 (296)
T PLN03075 201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHG--------ARAF------LYPVVDPCDLR------GFEVLSVF 259 (296)
T ss_pred Ee-cccccccccHHHHHHHHHHhcCCCcEEEEecccc--------hHhh------cCCCCChhhCC------CeEEEEEE
Confidence 99 99998 688999999999999999999976321 1100 12223444443 99988764
Q ss_pred EeC-cE--EEEEEeCC
Q 020307 316 VQQ-SF--IMFAAQKP 328 (328)
Q Consensus 316 ~~~-~~--~~~~a~k~ 328 (328)
... .. .+++++|+
T Consensus 260 ~P~~~v~Nsvi~~r~~ 275 (296)
T PLN03075 260 HPTDEVINSVIIARKP 275 (296)
T ss_pred CCCCCceeeEEEEEee
Confidence 432 22 66666663
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.8e-16 Score=127.37 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=115.1
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...+..+|.|+|||+|..+..|+++.|...++|+|.|++|++.|+++ .++..|..+|+..+. ++...|++
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--------lp~~~f~~aDl~~w~-p~~~~dll 96 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--------LPDATFEEADLRTWK-PEQPTDLL 96 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh--------CCCCceecccHhhcC-CCCccchh
Confidence 455677899999999999999999999999999999999999999887 789999999998874 56789999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCC-CCcchhhHHH-----HHhhh----ccCCCCCHHHHHHHHHH
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT-SSTSLTGRVL-----RERIL----QNYNYLTEEEIEDLCTS 306 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~-~~~~~~~~~~-----~~~~~----~~~~~~~~~~l~~ll~~ 306 (328)
+++.||++++|-..+|..+...|.|||+|.+..|.... +.+..+.+.. ..... ......++...-++|..
T Consensus 97 faNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa~ 176 (257)
T COG4106 97 FANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLAP 176 (257)
T ss_pred hhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhCc
Confidence 99999999999999999999999999999998886532 2222211111 11111 23445667777777777
Q ss_pred CCCe
Q 020307 307 CGLT 310 (328)
Q Consensus 307 ~Gf~ 310 (328)
.+-+
T Consensus 177 ~~~r 180 (257)
T COG4106 177 LACR 180 (257)
T ss_pred ccce
Confidence 6554
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-15 Score=139.55 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=108.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.. +.+|+|+|+|+++++.|+++.. ..++.+...|...+ +++||.|
T Consensus 163 l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~------~l~v~~~~~D~~~l---~~~fD~I 232 (383)
T PRK11705 163 LQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA------GLPVEIRLQDYRDL---NGQFDRI 232 (383)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc------cCeEEEEECchhhc---CCCCCEE
Confidence 445678899999999999999999874 4599999999999999998864 22578888888665 4689999
Q ss_pred EeccccccCCC--hHHHHHHHHhcccCCcEEEEEEeccCCC---CcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 237 HAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTS---STSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 237 ~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
++..+++|+++ +..+++++.++|||||++++.+...... ...++.+ .........+.+++...++ .||++
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~----yifp~g~lps~~~i~~~~~-~~~~v 307 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINK----YIFPNGCLPSVRQIAQASE-GLFVM 307 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCcee----eecCCCcCCCHHHHHHHHH-CCcEE
Confidence 99999999964 4689999999999999999987654321 1112111 1111223557788888766 58987
Q ss_pred EEEE
Q 020307 312 YTSK 315 (328)
Q Consensus 312 v~~~ 315 (328)
....
T Consensus 308 ~d~~ 311 (383)
T PRK11705 308 EDWH 311 (383)
T ss_pred EEEe
Confidence 7643
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.5e-15 Score=123.00 Aligned_cols=139 Identities=16% Similarity=0.196 Sum_probs=101.9
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.++||+|||.|+.+..|+++|. +|+++|+|+..++.+++.+...+ -.+.....|+....++ +.||+|
T Consensus 26 ~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~~----l~i~~~~~Dl~~~~~~-~~yD~I 98 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEEG----LDIRTRVADLNDFDFP-EEYDFI 98 (192)
T ss_dssp CTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT-----TEEEEE-BGCCBS-T-TTEEEE
T ss_pred HhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhcC----ceeEEEEecchhcccc-CCcCEE
Confidence 3344678999999999999999999998 99999999999999988877764 3599999999887764 689999
Q ss_pred EeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 237 HAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 237 ~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
++..|++|++.+ ..+++.+...++|||++++.++..... .+. .......+.+.+|...+. |+++++
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d-~p~--------~~~~~f~~~~~EL~~~y~--dW~il~ 166 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPD-YPC--------PSPFPFLLKPGELREYYA--DWEILK 166 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SS-S----------SS--S--B-TTHHHHHTT--TSEEEE
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCC-CCC--------CCCCCcccCHHHHHHHhC--CCeEEE
Confidence 999999998644 468999999999999999877643221 111 012234567788988887 687776
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.3e-15 Score=129.35 Aligned_cols=133 Identities=20% Similarity=0.314 Sum_probs=103.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++...++ ...+.+..+ +.+||+|+++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~--~~~~~~~~~--------~~~fD~Vvan 186 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGV--ELNVYLPQG--------DLKADVIVAN 186 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCC--CceEEEccC--------CCCcCEEEEc
Confidence 3678999999999999998888765 3699999999999999999877542 122332222 2279999987
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeCc
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS 319 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~ 319 (328)
...+. ...+++++.++|||||+++++.... ...+++.+.+++.||++++....+.
T Consensus 187 i~~~~---~~~l~~~~~~~LkpgG~lilsgi~~----------------------~~~~~v~~~l~~~Gf~~~~~~~~~~ 241 (250)
T PRK00517 187 ILANP---LLELAPDLARLLKPGGRLILSGILE----------------------EQADEVLEAYEEAGFTLDEVLERGE 241 (250)
T ss_pred CcHHH---HHHHHHHHHHhcCCCcEEEEEECcH----------------------hhHHHHHHHHHHCCCEEEEEEEeCC
Confidence 54322 3577899999999999999976432 1346788999999999999999999
Q ss_pred EEEEEEeCC
Q 020307 320 FIMFAAQKP 328 (328)
Q Consensus 320 ~~~~~a~k~ 328 (328)
|..++++|+
T Consensus 242 W~~~~~~~~ 250 (250)
T PRK00517 242 WVALVGKKK 250 (250)
T ss_pred EEEEEEEeC
Confidence 999998875
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-15 Score=127.68 Aligned_cols=103 Identities=12% Similarity=0.234 Sum_probs=86.8
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++..+..+++|+|+|+++++.|+++ .+++.+..+|+.. |+++++||+|++.
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~--------~~~~~~~~~d~~~-~~~~~sfD~V~~~ 112 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY--------LPNINIIQGSLFD-PFKDNFFDLVLTK 112 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh--------CCCCcEEEeeccC-CCCCCCEEEEEEC
Confidence 456789999999999999999885567999999999999999875 3467788999887 8889999999999
Q ss_pred cccccCC--ChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 240 AALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 240 ~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
.+++|++ +...+++++.|++ ++++++.+...+
T Consensus 113 ~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 113 GVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred ChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 9999995 2357888888887 568888776543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.7e-15 Score=125.31 Aligned_cols=139 Identities=22% Similarity=0.193 Sum_probs=103.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC---------cCCCCCeEEEEecCCCCCCC-
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVRADVCRLPFA- 229 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~---------~~~~~~i~~~~~d~~~lp~~- 229 (328)
.++.+|||+|||.|..+..|+++|. +|+|+|+|+.+++.+.+...... .....+++++++|+.+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 4678999999999999999999987 99999999999998644221100 00034789999999887642
Q ss_pred CCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHC
Q 020307 230 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 307 (328)
.+.||.|+-..+++|++.. ...++.+.++|||||++++.++...... . ......++.+++.+++..
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~--~---------~gpp~~~~~~eL~~~f~~- 178 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSE--M---------AGPPFSVSPAEVEALYGG- 178 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCC--C---------CCcCCCCCHHHHHHHhcC-
Confidence 4679999999999999644 3689999999999999888776542110 0 122356899999999974
Q ss_pred CCeEE
Q 020307 308 GLTNY 312 (328)
Q Consensus 308 Gf~~v 312 (328)
+|++.
T Consensus 179 ~~~i~ 183 (213)
T TIGR03840 179 HYEIE 183 (213)
T ss_pred CceEE
Confidence 34433
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-15 Score=145.31 Aligned_cols=109 Identities=18% Similarity=0.289 Sum_probs=94.4
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCccce
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDA 235 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~ 235 (328)
...++.+|||+|||+|.++..+++..++.+++|+|+|+.|++.|+++.... ..++.++++|+.++| +++++||+
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~----g~~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE----GRSWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----CCCeEEEEcchHhCccccCCCCEEE
Confidence 344678999999999999999998888889999999999999999876543 346788999998887 77899999
Q ss_pred EEeccccccCC-------------ChHHHHHHHHhcccCCcEEEEEEe
Q 020307 236 VHAGAALHCWP-------------SPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 236 i~~~~vl~h~~-------------d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
|+++.++||+. ++..+|+++.++|||||++++.+.
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 99999998762 457899999999999999999875
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-15 Score=122.91 Aligned_cols=150 Identities=15% Similarity=0.211 Sum_probs=106.1
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+....-.++||+|||.|.++..|+.+.. +++++|+|+..++.|+++... .+++.+.+.|+... .++++||+|
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~-----~~~V~~~~~dvp~~-~P~~~FDLI 110 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAG-----LPHVEWIQADVPEF-WPEGRFDLI 110 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS-EEEE
T ss_pred cCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCC-----CCCeEEEECcCCCC-CCCCCeeEE
Confidence 3444567899999999999999999975 999999999999999999876 67999999999765 368899999
Q ss_pred EeccccccCCCh---HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 237 HAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 237 ~~~~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
+++.+++++.+. ..+++.+...|+|||.+++.+.... . .. .--+.+..+.+.++|.+. |..++
T Consensus 111 V~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~---------~-c~---~wgh~~ga~tv~~~~~~~-~~~~~ 176 (201)
T PF05401_consen 111 VLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA---------N-CR---RWGHAAGAETVLEMLQEH-LTEVE 176 (201)
T ss_dssp EEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH---------H-HH---HTT-S--HHHHHHHHHHH-SEEEE
T ss_pred EEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC---------c-cc---ccCcccchHHHHHHHHHH-hhhee
Confidence 999999999764 4688999999999999999885311 1 11 112456899999999988 54444
Q ss_pred EEE------eCcEEEEEEeCC
Q 020307 314 SKV------QQSFIMFAAQKP 328 (328)
Q Consensus 314 ~~~------~~~~~~~~a~k~ 328 (328)
... ...+++..++||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~ 197 (201)
T PF05401_consen 177 RVECRGGSPNEDCLLARFRNP 197 (201)
T ss_dssp EEEEE-SSTTSEEEEEEEE--
T ss_pred EEEEcCCCCCCceEeeeecCC
Confidence 322 223466666665
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-14 Score=120.96 Aligned_cols=127 Identities=17% Similarity=0.254 Sum_probs=99.1
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-CCCCCccc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVD 234 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD 234 (328)
+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.+++++...++ ..++.++.+|+.+. +...+.||
T Consensus 36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~--~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV--LNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCCeEEEEechhhhHhhcCCCCC
Confidence 45567889999999999999988875 4556899999999999999999887653 35788999998653 32346899
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCe
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
.|++.. ...++..+++++.++|||||++++..... -+..++...++++||.
T Consensus 114 ~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~----------------------~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 114 RIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAILL----------------------ETVNNALSALENIGFN 164 (198)
T ss_pred EEEECC---CcccHHHHHHHHHHHcCCCcEEEEEeecH----------------------HHHHHHHHHHHHcCCC
Confidence 999854 23567889999999999999998755321 1235677778888884
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.5e-15 Score=118.28 Aligned_cols=132 Identities=20% Similarity=0.350 Sum_probs=109.0
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccc
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 243 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~ 243 (328)
+|||+|||+|.++..|++.+.....+|+|.|+.+++.|+..++..+. ...|.|.+.|+....+..++||+|+--..+.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~--~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF--SNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC--CcceeEEEeeccCCcccccceeEEeecCcee
Confidence 99999999999999999998666799999999999999988887763 3349999999988778888999999776665
Q ss_pred cCC---C-----hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 244 CWP---S-----PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 244 h~~---d-----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
.+. | +...+..+.+.|+|||+++|..-+ ||.+++.+.++..||+.....
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN-----------------------~T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN-----------------------FTKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecC-----------------------ccHHHHHHHHhcCCeEEEEee
Confidence 442 1 235688899999999999997743 688999999999999988754
Q ss_pred EeCcE
Q 020307 316 VQQSF 320 (328)
Q Consensus 316 ~~~~~ 320 (328)
....|
T Consensus 205 p~ptF 209 (227)
T KOG1271|consen 205 PTPTF 209 (227)
T ss_pred ccceE
Confidence 43333
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=113.62 Aligned_cols=107 Identities=24% Similarity=0.244 Sum_probs=88.2
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++..+..+|+++|+|+.+++.+++++...+ ..++.++.+|+.. ++...++||+
T Consensus 15 ~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~ 91 (124)
T TIGR02469 15 LRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG---VSNIVIVEGDAPEALEDSLPEPDR 91 (124)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC---CCceEEEeccccccChhhcCCCCE
Confidence 33445679999999999999999998766799999999999999999887765 4578888888764 3333468999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
|++....++ ...+++++.+.|||||++++..
T Consensus 92 v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 92 VFIGGSGGL---LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EEECCcchh---HHHHHHHHHHHcCCCCEEEEEe
Confidence 999776543 3588999999999999999875
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.1e-15 Score=124.18 Aligned_cols=109 Identities=18% Similarity=0.253 Sum_probs=89.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCCCccceEE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVH 237 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~i~ 237 (328)
...+|||||||+|.++..+++..|..+++|+|+++.+++.|++++...+ ..++.++.+|+..++ ++++++|.|+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~---l~ni~~i~~d~~~~~~~~~~~~~~d~v~ 92 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG---LKNLHVLCGDANELLDKFFPDGSLSKVF 92 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC---CCCEEEEccCHHHHHHhhCCCCceeEEE
Confidence 3569999999999999999999888899999999999999999888766 458999999997643 4566899999
Q ss_pred eccccccCCCh--------HHHHHHHHhcccCCcEEEEEEecc
Q 020307 238 AGAALHCWPSP--------SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 238 ~~~vl~h~~d~--------~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
++....+.... ..+++++.++|||||.+++.+...
T Consensus 93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred EECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 86543322211 468999999999999999988543
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.6e-15 Score=129.99 Aligned_cols=109 Identities=14% Similarity=0.198 Sum_probs=85.9
Q ss_pred CCCeEEEEcCCcCH----HHHHHHHhCC-----CceEEEEeCCHHHHHHHHHHHHh----cCcC----------------
Q 020307 161 QGGLLVDVSCGSGL----FSRKFAKSGT-----YSGVVALDFSENMLRQCYDFIKQ----DNTI---------------- 211 (328)
Q Consensus 161 ~~~~vLDiGcG~G~----~~~~l~~~~~-----~~~v~g~D~s~~~~~~a~~~~~~----~~~~---------------- 211 (328)
++.+|||+|||+|. ++..+++.++ ..+++|+|+|+.+++.|++..-. .+++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999997 4445555432 46899999999999999975310 0000
Q ss_pred ----CCCCeEEEEecCCCCCCCCCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEE
Q 020307 212 ----LTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 212 ----~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~ 269 (328)
...++.|.++|+.+.+++.++||+|+|.++++|++++ .++++++.++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0237899999999887778899999999999999755 479999999999999999855
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.2e-14 Score=120.37 Aligned_cols=140 Identities=21% Similarity=0.191 Sum_probs=102.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC---------cCCCCCeEEEEecCCCCCCC-
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVRADVCRLPFA- 229 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~---------~~~~~~i~~~~~d~~~lp~~- 229 (328)
.++.+|||+|||.|..+..|+++|. +|+|+|+|+.+++.+.+...... .....++.+.++|+.+++..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 4568999999999999999999987 99999999999998743211100 00135789999999887533
Q ss_pred CCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHC
Q 020307 230 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 307 (328)
.+.||.|+-..+++|++.. ..+++.+.++|||||++++.+....... . ......++.+++.+++..
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~--~---------~gPp~~~~~~el~~~~~~- 181 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE--L---------AGPPFSVSDEEVEALYAG- 181 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc--C---------CCCCCCCCHHHHHHHhcC-
Confidence 3589999999999999644 4789999999999997666554432110 0 122347899999999964
Q ss_pred CCeEEE
Q 020307 308 GLTNYT 313 (328)
Q Consensus 308 Gf~~v~ 313 (328)
+|++..
T Consensus 182 ~~~i~~ 187 (218)
T PRK13255 182 CFEIEL 187 (218)
T ss_pred CceEEE
Confidence 254443
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-13 Score=121.12 Aligned_cols=149 Identities=18% Similarity=0.207 Sum_probs=101.6
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC---CCCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p~~~~~ 232 (328)
+...++.+|||+|||+|.++..+++. ++...|+++|+++.+.+...+.... ..++.++.+|+... .....+
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----r~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----RPNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCCEEEECCccChhhhhcccCC
Confidence 45678899999999999999999988 4456899999998766554444332 46888999998542 223458
Q ss_pred cceEEeccccccCCCh-HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 233 VDAVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~-~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
||+|++... .+|. ..++.++.++|||||.+++......-...+ .....|. +++ +.|+++||++
T Consensus 203 vDvV~~Dva---~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~-----------~pe~~f~-~ev-~~L~~~GF~~ 266 (293)
T PTZ00146 203 VDVIFADVA---QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTA-----------KPEVVFA-SEV-QKLKKEGLKP 266 (293)
T ss_pred CCEEEEeCC---CcchHHHHHHHHHHhccCCCEEEEEEeccccccCC-----------CHHHHHH-HHH-HHHHHcCCce
Confidence 999998774 2444 456678999999999999953221100000 0011122 344 7899999999
Q ss_pred EEEEEeCcE----EEEEEe
Q 020307 312 YTSKVQQSF----IMFAAQ 326 (328)
Q Consensus 312 v~~~~~~~~----~~~~a~ 326 (328)
++.....+| .+++++
T Consensus 267 ~e~v~L~Py~~~h~~v~~~ 285 (293)
T PTZ00146 267 KEQLTLEPFERDHAVVIGV 285 (293)
T ss_pred EEEEecCCccCCcEEEEEE
Confidence 987776655 445544
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-14 Score=122.03 Aligned_cols=105 Identities=20% Similarity=0.191 Sum_probs=86.6
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|..+..+++.. +..+|+++|+++++++.|++++...+. ..++.++.+|+.+.....++||+
T Consensus 68 l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~--~~~v~~~~~d~~~~~~~~~~fD~ 145 (205)
T PRK13944 68 IEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY--WGVVEVYHGDGKRGLEKHAPFDA 145 (205)
T ss_pred cCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCcEEEEECCcccCCccCCCccE
Confidence 445677899999999999999888763 245899999999999999999887653 34689999999765445679999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
|++..+++|++ +++.++|+|||++++..
T Consensus 146 Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 146 IIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 99999988775 46889999999998855
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6e-15 Score=123.09 Aligned_cols=152 Identities=18% Similarity=0.183 Sum_probs=112.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C-CCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-FASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~~~~~fD~i~ 237 (328)
.+-.++||+|||||.....|...-. +.+|+|+|++|++.|.++- .--.+.++++..+ + ..+..||+|+
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg--------~YD~L~~Aea~~Fl~~~~~er~DLi~ 193 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKG--------LYDTLYVAEAVLFLEDLTQERFDLIV 193 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhcc--------chHHHHHHHHHHHhhhccCCcccchh
Confidence 3457999999999999999988866 8999999999999998751 1223344444321 1 3567899999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEe
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ 317 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~ 317 (328)
...|+.++.+.+.++..+...|+|||.+.++.-...... .+... +....-.++.-++.+++..||+++.....
T Consensus 194 AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~-~f~l~------ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 194 AADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDG-GFVLG------PSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred hhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCC-Ceecc------hhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 999999999999999999999999999999876544221 12111 12233456788999999999999885321
Q ss_pred ---------CcEEEEEEeCC
Q 020307 318 ---------QSFIMFAAQKP 328 (328)
Q Consensus 318 ---------~~~~~~~a~k~ 328 (328)
-+-.+++++|+
T Consensus 267 tiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 267 TIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred cchhhcCCCCCCceEEEecC
Confidence 11267777764
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-13 Score=115.41 Aligned_cols=129 Identities=20% Similarity=0.277 Sum_probs=99.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.+++++...+.. ..++.++.+|+.+ ++.+++||+|+++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~-~~~~~~~d~vi~n 97 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLNNIR-NNGVEVIRSDLFE-PFRGDKFDVILFN 97 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHcCCC-CcceEEEeccccc-cccccCceEEEEC
Confidence 467799999999999999999885 49999999999999999988765531 1128888898865 3445689999987
Q ss_pred cccccCC---------------------ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHH
Q 020307 240 AALHCWP---------------------SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEE 298 (328)
Q Consensus 240 ~vl~h~~---------------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (328)
..+.+.. ....+++++.++|||||.+++..+. ....+
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~----------------------~~~~~ 155 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS----------------------LTGED 155 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc----------------------cCCHH
Confidence 5543211 1345799999999999999886632 12446
Q ss_pred HHHHHHHHCCCeEEEE
Q 020307 299 EIEDLCTSCGLTNYTS 314 (328)
Q Consensus 299 ~l~~ll~~~Gf~~v~~ 314 (328)
++.++++++||++...
T Consensus 156 ~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 156 EVLEYLEKLGFEAEVV 171 (188)
T ss_pred HHHHHHHHCCCeeeee
Confidence 7899999999987664
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.3e-14 Score=129.36 Aligned_cols=107 Identities=22% Similarity=0.304 Sum_probs=91.9
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC--CCCCCccce
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDA 235 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~ 235 (328)
....+..+||||||+|.++..+++..|...++|+|+++.+++.+.+++...+ ..++.++.+|+..+ .++++++|.
T Consensus 119 ~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g---L~NV~~i~~DA~~ll~~~~~~s~D~ 195 (390)
T PRK14121 119 SKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN---LKNLLIINYDARLLLELLPSNSVEK 195 (390)
T ss_pred cCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHhhhhCCCCceeE
Confidence 3445679999999999999999999988899999999999999999988776 56899999998654 467899999
Q ss_pred EEeccccccCCCh-----------HHHHHHHHhcccCCcEEEEEEecc
Q 020307 236 VHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 236 i~~~~vl~h~~d~-----------~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
|++. +++| ..+++++.|+|+|||.+.+.+-..
T Consensus 196 I~ln-----FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 196 IFVH-----FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred EEEe-----CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 9975 4555 578999999999999999988543
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.7e-14 Score=120.05 Aligned_cols=104 Identities=18% Similarity=0.209 Sum_probs=86.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||||||+|+++..+++. ++..+|+++|+++++++.+++++...+ ..++.++.+|........++||+
T Consensus 72 l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g---~~~v~~~~gd~~~~~~~~~~fD~ 148 (212)
T PRK13942 72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG---YDNVEVIVGDGTLGYEENAPYDR 148 (212)
T ss_pred cCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCcccCCCcCCCcCE
Confidence 45567899999999999999988877 344699999999999999999998765 45799999998766556789999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
|++...+++++ +.+.+.|||||++++..
T Consensus 149 I~~~~~~~~~~------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 149 IYVTAAGPDIP------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEECCCcccch------HHHHHhhCCCcEEEEEE
Confidence 99988776553 45677899999988854
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=121.38 Aligned_cols=138 Identities=18% Similarity=0.333 Sum_probs=108.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|-++...++.|. .+++|+|+++..++.+++++..++. ...+.....+....+ ..++||+|+++=
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v--~~~~~~~~~~~~~~~-~~~~~DvIVANI 237 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGV--ELLVQAKGFLLLEVP-ENGPFDVIVANI 237 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCC--chhhhcccccchhhc-ccCcccEEEehh
Confidence 788999999999999999999985 4699999999999999999988764 211223333333222 246999999865
Q ss_pred ccccCCCh-HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeCc
Q 020307 241 ALHCWPSP-SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS 319 (328)
Q Consensus 241 vl~h~~d~-~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~ 319 (328)
. .++ ..+...+.+.|||||+++++-.... -.+.+.+.+++.||++++......
T Consensus 238 L----A~vl~~La~~~~~~lkpgg~lIlSGIl~~----------------------q~~~V~~a~~~~gf~v~~~~~~~e 291 (300)
T COG2264 238 L----AEVLVELAPDIKRLLKPGGRLILSGILED----------------------QAESVAEAYEQAGFEVVEVLEREE 291 (300)
T ss_pred h----HHHHHHHHHHHHHHcCCCceEEEEeehHh----------------------HHHHHHHHHHhCCCeEeEEEecCC
Confidence 2 234 4778899999999999999774321 135788999999999999999999
Q ss_pred EEEEEEeCC
Q 020307 320 FIMFAAQKP 328 (328)
Q Consensus 320 ~~~~~a~k~ 328 (328)
|..+.++|.
T Consensus 292 W~~i~~kr~ 300 (300)
T COG2264 292 WVAIVGKRK 300 (300)
T ss_pred EEEEEEEcC
Confidence 999999874
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-13 Score=116.48 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=111.1
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|||+|||+|.++..+++.+ ..+++++|+|+.+++.+++++...+ .++.++.+|+... +++++||+|++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~----~~~~~~~~d~~~~-~~~~~fD~Vi~ 107 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAG----VDVDVRRGDWARA-VEFRPFDVVVS 107 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhC----CeeEEEECchhhh-ccCCCeeEEEE
Confidence 3467899999999999999998874 3589999999999999999887653 3578888998653 45678999999
Q ss_pred ccccccCCC---------------------hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhh------hcc
Q 020307 239 GAALHCWPS---------------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI------LQN 291 (328)
Q Consensus 239 ~~vl~h~~d---------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~------~~~ 291 (328)
+--...-.. ...+++++.++|||||++++....... .... ...+.... ..+
T Consensus 108 npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~-~~~~-~~~l~~~g~~~~~~~~~ 185 (223)
T PRK14967 108 NPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSG-VERT-LTRLSEAGLDAEVVASQ 185 (223)
T ss_pred CCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccC-HHHH-HHHHHHCCCCeEEEEee
Confidence 742211110 245788899999999999987644321 1111 22222210 123
Q ss_pred CCCCCHHH--HHHHHHHCCCeEEEEEEeCcEEEEEEeCC
Q 020307 292 YNYLTEEE--IEDLCTSCGLTNYTSKVQQSFIMFAAQKP 328 (328)
Q Consensus 292 ~~~~~~~~--l~~ll~~~Gf~~v~~~~~~~~~~~~a~k~ 328 (328)
...|.... ...++++.||.... ......+++.|+||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 223 (223)
T PRK14967 186 WIPFGPVLRARAAWLERRGLLPPG-QREEELVVIRADKP 223 (223)
T ss_pred ccCccHHHHHHHHHHHHcCCCCCC-CceEEEEEEEeecC
Confidence 33344433 45788999998664 55566788899997
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=107.35 Aligned_cols=129 Identities=20% Similarity=0.233 Sum_probs=107.7
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCCCCCccc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVD 234 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD 234 (328)
.|.+.++.+++|||||+|..+..++..+|..+|+++|-++++++..+++....+ .+|+.++.+++.+ ++ ...++|
T Consensus 29 ~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg---~~n~~vv~g~Ap~~L~-~~~~~d 104 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG---VDNLEVVEGDAPEALP-DLPSPD 104 (187)
T ss_pred hhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC---CCcEEEEeccchHhhc-CCCCCC
Confidence 467789999999999999999999988999999999999999999999999887 7899999999954 33 222799
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCC-eEEE
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL-TNYT 313 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf-~~v~ 313 (328)
.|+.... .+...+|+.+...|||||++++...... +.....+.+++.|+ +++.
T Consensus 105 aiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE----------------------~~~~a~~~~~~~g~~ei~~ 158 (187)
T COG2242 105 AIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLE----------------------TLAKALEALEQLGGREIVQ 158 (187)
T ss_pred EEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHH----------------------HHHHHHHHHHHcCCceEEE
Confidence 9999887 3467889999999999999999664321 33456788899999 6555
Q ss_pred E
Q 020307 314 S 314 (328)
Q Consensus 314 ~ 314 (328)
.
T Consensus 159 v 159 (187)
T COG2242 159 V 159 (187)
T ss_pred E
Confidence 4
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-13 Score=115.32 Aligned_cols=157 Identities=18% Similarity=0.319 Sum_probs=104.4
Q ss_pred chHHHHHHhhHHhhhhcCCCCCcchh-hhcccc-CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q 020307 129 PFVSFLYERGWRQNFNRSGFPGPDEE-EYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK 206 (328)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~ 206 (328)
+.+-..|+.+++++...+....-... +++... +...|-|+|||.+.++..+... .+|.-.|+-.
T Consensus 38 P~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~---~~V~SfDLva----------- 103 (219)
T PF05148_consen 38 PELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK---HKVHSFDLVA----------- 103 (219)
T ss_dssp HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS------------
T ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC---ceEEEeeccC-----------
Confidence 44445789999988887654433333 556544 4579999999999998765532 2799999843
Q ss_pred hcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH
Q 020307 207 QDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE 286 (328)
Q Consensus 207 ~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 286 (328)
.+-.+..+|+.++|++++++|+++++..|.- .|...+++|+.|+|||||.|.|.+....
T Consensus 104 -------~n~~Vtacdia~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SR------------- 162 (219)
T PF05148_consen 104 -------PNPRVTACDIANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSR------------- 162 (219)
T ss_dssp -------SSTTEEES-TTS-S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG-------------
T ss_pred -------CCCCEEEecCccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEeccc-------------
Confidence 2334678999999999999999999887764 4788999999999999999999996432
Q ss_pred hhhccCCCCCHHHHHHHHHHCCCeEEEEEEe-CcEEEEEEeC
Q 020307 287 RILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ-QSFIMFAAQK 327 (328)
Q Consensus 287 ~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~-~~~~~~~a~k 327 (328)
+-+.+.+.+.++..||+....... .-|+++.++|
T Consensus 163 -------f~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 163 -------FENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp --------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred -------CcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 236778999999999998886544 4467777765
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.3e-13 Score=123.90 Aligned_cols=112 Identities=14% Similarity=0.141 Sum_probs=87.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+....+.+|||+|||+|.++..+++.+|..+|+++|+|+.+++.++++++..+.....++.++..|.... ++.++||+|
T Consensus 224 lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlI 302 (378)
T PRK15001 224 LPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAV 302 (378)
T ss_pred CCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEE
Confidence 3333456999999999999999999988889999999999999999998765421123678888887442 235689999
Q ss_pred EeccccccC---CC--hHHHHHHHHhcccCCcEEEEEE
Q 020307 237 HAGAALHCW---PS--PSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 237 ~~~~vl~h~---~d--~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+++--+|.. .+ ..++++++.++|+|||.++++.
T Consensus 303 lsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 303 LCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 997555432 22 2478999999999999999986
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-13 Score=121.88 Aligned_cols=136 Identities=21% Similarity=0.328 Sum_probs=104.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|-++...++.|. .+|+|+|+++.+++.|++++..+++ ..++.+. ..... ..++||+|+++
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~--~~~~~v~--~~~~~--~~~~~dlvvAN 232 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGV--EDRIEVS--LSEDL--VEGKFDLVVAN 232 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT---TTCEEES--CTSCT--CCS-EEEEEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCC--CeeEEEE--Eeccc--ccccCCEEEEC
Confidence 4678999999999999999999985 4799999999999999999998875 4444432 22222 35899999987
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeCc
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS 319 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~ 319 (328)
-..+- ...+...+.++|+|||+++++-.... ..+++.+.+++ ||++++....+.
T Consensus 233 I~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~~----------------------~~~~v~~a~~~-g~~~~~~~~~~~ 286 (295)
T PF06325_consen 233 ILADV---LLELAPDIASLLKPGGYLILSGILEE----------------------QEDEVIEAYKQ-GFELVEEREEGE 286 (295)
T ss_dssp S-HHH---HHHHHHHCHHHEEEEEEEEEEEEEGG----------------------GHHHHHHHHHT-TEEEEEEEEETT
T ss_pred CCHHH---HHHHHHHHHHhhCCCCEEEEccccHH----------------------HHHHHHHHHHC-CCEEEEEEEECC
Confidence 54321 24667788999999999999875432 24577888877 999999999999
Q ss_pred EEEEEEeCC
Q 020307 320 FIMFAAQKP 328 (328)
Q Consensus 320 ~~~~~a~k~ 328 (328)
|..+.++|.
T Consensus 287 W~~l~~~Kk 295 (295)
T PF06325_consen 287 WVALVFKKK 295 (295)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEEeC
Confidence 999999874
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.2e-13 Score=118.96 Aligned_cols=132 Identities=18% Similarity=0.173 Sum_probs=101.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|++++...++ ..++.++.+|+.+ ++++++||+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~--~~~i~~~~~D~~~-~~~~~~fD~Iv~NP 197 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL--EDRVTLIQSDLFA-ALPGRKYDLIVSNP 197 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchhh-ccCCCCccEEEECC
Confidence 45689999999999999999988778999999999999999999987664 3579999999854 23456899999861
Q ss_pred ------ccccC-----CCh--------------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCC
Q 020307 241 ------ALHCW-----PSP--------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYL 295 (328)
Q Consensus 241 ------vl~h~-----~d~--------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (328)
.+.++ .+| ..+++++.++|+|||++++... .
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g------------------------~ 253 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG------------------------N 253 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC------------------------c
Confidence 11111 122 4568889999999999988652 1
Q ss_pred CHHHHHHHHHHCCCeEEEEEEeCc
Q 020307 296 TEEEIEDLCTSCGLTNYTSKVQQS 319 (328)
Q Consensus 296 ~~~~l~~ll~~~Gf~~v~~~~~~~ 319 (328)
+.+.+++++..+||........+.
T Consensus 254 ~~~~v~~~~~~~~~~~~~~~~~~~ 277 (284)
T TIGR03533 254 SMEALEEAYPDVPFTWLEFENGGD 277 (284)
T ss_pred CHHHHHHHHHhCCCceeeecCCCc
Confidence 335788889999998776444433
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-13 Score=124.92 Aligned_cols=129 Identities=21% Similarity=0.257 Sum_probs=102.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
....++.+|||+|||+|.++..++..+. +++|+|+++.+++.++.+++..+ ..++.+..+|+.++|+.+++||+|
T Consensus 178 ~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~g---~~~i~~~~~D~~~l~~~~~~~D~I 252 (329)
T TIGR01177 178 ARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHYG---IEDFFVKRGDATKLPLSSESVDAI 252 (329)
T ss_pred hCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHhC---CCCCeEEecchhcCCcccCCCCEE
Confidence 3456788999999999999988877654 99999999999999999998876 345889999999999888899999
Q ss_pred Eecccc------c-c-CCC-hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHC
Q 020307 237 HAGAAL------H-C-WPS-PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 237 ~~~~vl------~-h-~~d-~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 307 (328)
+++--. . + ..+ ...+++++.++|||||++++..+.. .++.++++++
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~-------------------------~~~~~~~~~~ 307 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR-------------------------IDLESLAEDA 307 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC-------------------------CCHHHHHhhc
Confidence 996211 1 1 101 3688999999999999999877542 2566789999
Q ss_pred CCeEEEEEE
Q 020307 308 GLTNYTSKV 316 (328)
Q Consensus 308 Gf~~v~~~~ 316 (328)
|| ++....
T Consensus 308 g~-i~~~~~ 315 (329)
T TIGR01177 308 FR-VVKRFE 315 (329)
T ss_pred Cc-chheee
Confidence 99 666433
|
This family is found exclusively in the Archaea. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-13 Score=122.47 Aligned_cols=130 Identities=18% Similarity=0.259 Sum_probs=99.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++...++ ..++.+...+... ..+++||+|+++
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~--~~~~~~~~~~~~~--~~~~~fDlVvan 232 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQV--SDRLQVKLIYLEQ--PIEGKADVIVAN 232 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCC--CcceEEEeccccc--ccCCCceEEEEe
Confidence 357899999999999998888875 35899999999999999999887654 3456666665432 336789999997
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeCc
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS 319 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~ 319 (328)
...++ ...++.++.++|||||+++++..... ..+++.+.+++. |++++....+.
T Consensus 233 ~~~~~---l~~ll~~~~~~LkpgG~li~sgi~~~----------------------~~~~v~~~~~~~-f~~~~~~~~~~ 286 (288)
T TIGR00406 233 ILAEV---IKELYPQFSRLVKPGGWLILSGILET----------------------QAQSVCDAYEQG-FTVVEIRQREE 286 (288)
T ss_pred cCHHH---HHHHHHHHHHHcCCCcEEEEEeCcHh----------------------HHHHHHHHHHcc-CceeeEeccCC
Confidence 65432 35789999999999999999774321 235777888777 98888666554
Q ss_pred E
Q 020307 320 F 320 (328)
Q Consensus 320 ~ 320 (328)
|
T Consensus 287 W 287 (288)
T TIGR00406 287 W 287 (288)
T ss_pred C
Confidence 4
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-13 Score=117.89 Aligned_cols=104 Identities=15% Similarity=0.118 Sum_probs=86.2
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++... ..+|+++|+++++++.|++++...+ ..++.++.+|........++||+
T Consensus 73 l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g---~~~v~~~~~d~~~~~~~~~~fD~ 149 (215)
T TIGR00080 73 LELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG---LDNVIVIVGDGTQGWEPLAPYDR 149 (215)
T ss_pred hCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCeEEEECCcccCCcccCCCCE
Confidence 4556789999999999999999998853 4569999999999999999998866 46799999998765444568999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
|++.....++ .+.+.+.|||||++++..
T Consensus 150 Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 150 IYVTAAGPKI------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred EEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence 9988776554 356788999999998865
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.51 E-value=5e-13 Score=118.05 Aligned_cols=128 Identities=20% Similarity=0.305 Sum_probs=100.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
.+.+|||+|||+|.++..+++..+..+++|+|+++.+++.+++++...+ ..++.++.+|+.+ ++++++||+|+++-
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~~~~~~d~~~-~~~~~~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG---LDNVTFLQSDWFE-PLPGGKFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCeEEEEECchhc-cCcCCceeEEEECC
Confidence 3468999999999999999998777799999999999999999988765 3479999999866 45578999999853
Q ss_pred cc------ccCC------C--------------hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCC
Q 020307 241 AL------HCWP------S--------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNY 294 (328)
Q Consensus 241 vl------~h~~------d--------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (328)
-. +++. + ...+++++.++|+|||++++... +
T Consensus 163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~-----------------------~ 219 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG-----------------------Y 219 (251)
T ss_pred CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC-----------------------c
Confidence 21 1111 0 13568899999999999988541 1
Q ss_pred CCHHHHHHHHHHCCCeEEEEE
Q 020307 295 LTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 295 ~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
...+++.++++++||+.++..
T Consensus 220 ~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 220 DQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred cHHHHHHHHHHhCCCCceEEE
Confidence 234678999999999877643
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.7e-14 Score=118.89 Aligned_cols=147 Identities=20% Similarity=0.260 Sum_probs=110.3
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC----CCCCCCccceE
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGFVDAV 236 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~fD~i 236 (328)
.+||+||||.|....-+.+-.++ ..++++|.|+.+++..++..... ..++...+.|+.. -|...+++|+|
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----e~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----ESRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----hhhhcccceeccchhccCCCCcCccceE
Confidence 38999999999999988887665 78999999999999988765432 3345555566633 34668999999
Q ss_pred EeccccccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCcc-h-----hhHH-HHHhhhccCCCCCHHHHHHHHHHC
Q 020307 237 HAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTS-L-----TGRV-LRERILQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 237 ~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~-----~~~~-~~~~~~~~~~~~~~~~l~~ll~~~ 307 (328)
++.+||--++ ....+++++.++|||||.+++.++..+....- + +... +.........+|+.+++..++.++
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhc
Confidence 9999998874 23588999999999999999999887632111 1 0111 011122445799999999999999
Q ss_pred CCeEEE
Q 020307 308 GLTNYT 313 (328)
Q Consensus 308 Gf~~v~ 313 (328)
||..++
T Consensus 229 gf~~~~ 234 (264)
T KOG2361|consen 229 GFEEVQ 234 (264)
T ss_pred ccchhc
Confidence 998765
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.5e-13 Score=115.62 Aligned_cols=99 Identities=21% Similarity=0.216 Sum_probs=79.9
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------CC
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA 229 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~ 229 (328)
..++.+|||+|||+|.++..+++.. +...|+|+|+++ + . . .+++.++++|+.+.+ +.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----~------~---~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----D------P---IVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----c------C---CCCcEEEecCCCChHHHHHHHHHhC
Confidence 3567899999999999999998874 446899999988 1 1 1 457899999998753 56
Q ss_pred CCccceEEeccccccCCCh-----------HHHHHHHHhcccCCcEEEEEEec
Q 020307 230 SGFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~-----------~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+++||+|++..+.++..++ ..+|+++.++|||||.+++..+.
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 7899999998776665543 35799999999999999997754
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-12 Score=119.41 Aligned_cols=105 Identities=19% Similarity=0.245 Sum_probs=86.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
...++|||+|||+|.++..+++.++..+++++|+|+.+++.++++++..++ ...++..|.... .+++||+|+++
T Consensus 195 ~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l----~~~~~~~D~~~~--~~~~fDlIvsN 268 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL----EGEVFASNVFSD--IKGRFDMIISN 268 (342)
T ss_pred cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCEEEEcccccc--cCCCccEEEEC
Confidence 345689999999999999999998878999999999999999998887642 356777777542 25789999999
Q ss_pred cccccCC-----ChHHHHHHHHhcccCCcEEEEEEe
Q 020307 240 AALHCWP-----SPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 240 ~vl~h~~-----d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
-.+|+.. ....+++++.+.|||||.++++..
T Consensus 269 PPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 269 PPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 8877632 246889999999999999998774
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=106.73 Aligned_cols=107 Identities=21% Similarity=0.336 Sum_probs=88.1
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCccceEEec
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAG 239 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~i~~~ 239 (328)
|.+|||+|||+|.++..+++.+ ..+++|+|+++..++.++.++...+. ..++.++++|+.+.. +++++||+|+++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGL--DDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTT--TTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccC--CceEEEEECchhhchhhccCceeEEEEEC
Confidence 4689999999999999999998 56999999999999999999988664 568999999997765 678999999997
Q ss_pred cccccCC--------ChHHHHHHHHhcccCCcEEEEEEec
Q 020307 240 AALHCWP--------SPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 240 ~vl~h~~--------d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
--..... .-..+++++.++|||||.+++..++
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 5544221 1247899999999999999998763
|
... |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=117.58 Aligned_cols=127 Identities=18% Similarity=0.169 Sum_probs=97.6
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc--
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA-- 240 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~-- 240 (328)
.+|||+|||+|.++..++...+..+++++|+|+.+++.|++++...++ ..++.++.+|+.+. +++++||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l--~~~i~~~~~D~~~~-l~~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL--EDRVTLIESDLFAA-LPGRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CCcEEEEECchhhh-CCCCCccEEEECCCC
Confidence 689999999999999999988778999999999999999999987663 35799999998542 2356899999861
Q ss_pred ----c-------cccCCC------------hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCH
Q 020307 241 ----A-------LHCWPS------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTE 297 (328)
Q Consensus 241 ----v-------l~h~~d------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (328)
. +.|-|. ...+++++.+.|+|||++++.... +.
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~------------------------~~ 267 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN------------------------SR 267 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc------------------------CH
Confidence 1 122221 136789999999999999985521 23
Q ss_pred HHHHHHHHHCCCeEEEEEE
Q 020307 298 EEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 298 ~~l~~ll~~~Gf~~v~~~~ 316 (328)
+.+.+++...||.......
T Consensus 268 ~~~~~~~~~~~~~~~~~~~ 286 (307)
T PRK11805 268 VHLEEAYPDVPFTWLEFEN 286 (307)
T ss_pred HHHHHHHhhCCCEEEEecC
Confidence 4577788888887766433
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.9e-13 Score=110.64 Aligned_cols=110 Identities=23% Similarity=0.404 Sum_probs=88.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...+..+|||+|||+|.++..+++.++..+|+++|+++.+++.+++++...++ .++.++..|..+. .++++||+|
T Consensus 27 l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~---~~v~~~~~d~~~~-~~~~~fD~I 102 (170)
T PF05175_consen 27 LPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL---ENVEVVQSDLFEA-LPDGKFDLI 102 (170)
T ss_dssp HHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC---TTEEEEESSTTTT-CCTTCEEEE
T ss_pred HhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc---ccccccccccccc-ccccceeEE
Confidence 333467899999999999999999999877799999999999999999998763 3499999998653 337899999
Q ss_pred EeccccccCCC-----hHHHHHHHHhcccCCcEEEEEEe
Q 020307 237 HAGAALHCWPS-----PSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 237 ~~~~vl~h~~d-----~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+++--++.-.+ ...++++..+.|||||.+++...
T Consensus 103 v~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 103 VSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp EE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 99865544333 35789999999999999987664
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.5e-13 Score=120.84 Aligned_cols=108 Identities=18% Similarity=0.228 Sum_probs=82.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCCCCC----cc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASG----FV 233 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~----~f 233 (328)
.++.+|||+|||+|..+..|++..+ ..+|+|+|+|++|++.+++++..... ..++.++++|+.+ +++... ..
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p--~~~v~~i~gD~~~~~~~~~~~~~~~~ 139 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP--QLEVHGICADFTQPLALPPEPAAGRR 139 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC--CceEEEEEEcccchhhhhcccccCCe
Confidence 3567999999999999999998864 45899999999999999998765321 3456778999865 343332 23
Q ss_pred ceEEeccccccCCC--hHHHHHHHHhcccCCcEEEEEE
Q 020307 234 DAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 234 D~i~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.++++...+.|++. ...+|++++++|+|||.+++..
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 34555567888763 3478999999999999998644
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-13 Score=113.50 Aligned_cols=101 Identities=28% Similarity=0.413 Sum_probs=83.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC-CCCCCCCCccceEEec
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~i~~~ 239 (328)
...-|||||||+|..+..|.+.|. ..+|+|+|+.|++.|.++- -.-+++.+|+ +.+||+.++||.+++.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~e--------~egdlil~DMG~GlpfrpGtFDg~ISI 119 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVERE--------LEGDLILCDMGEGLPFRPGTFDGVISI 119 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHhh--------hhcCeeeeecCCCCCCCCCccceEEEe
Confidence 467899999999999999999886 8999999999999998742 1245777887 7799999999999998
Q ss_pred cccccCC-------ChH----HHHHHHHhcccCCcEEEEEEec
Q 020307 240 AALHCWP-------SPS----NAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 240 ~vl~h~~-------d~~----~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
..+.++- +|. .++..++.+|++|++.++..+-
T Consensus 120 SAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 120 SAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred eeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 7775552 332 5788899999999999987643
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.2e-13 Score=111.81 Aligned_cols=149 Identities=15% Similarity=0.166 Sum_probs=105.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
...+.||.|+|-|+.+..+.... ..+|..+|+.+..++.|++.+.... ..-..+++..++++....++||+|++-|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~---~~v~~~~~~gLQ~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDN---PRVGEFYCVGLQDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGG---CCEEEEEES-GGG----TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccC---CCcceEEecCHhhccCCCCcEeEEEehH
Confidence 45799999999999998775443 3499999999999999998766522 3456788888887754567999999999
Q ss_pred ccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeC
Q 020307 241 ALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQ 318 (328)
Q Consensus 241 vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~ 318 (328)
++.|++|. ..+|+.+...|+|+|++++-+.........+ .........+.+.++++++++|+++++...+.
T Consensus 131 ~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~-------D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~ 203 (218)
T PF05891_consen 131 CLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEF-------DEEDSSVTRSDEHFRELFKQAGLRLVKEEKQK 203 (218)
T ss_dssp -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEE-------ETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-T
T ss_pred hhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCccc-------CCccCeeecCHHHHHHHHHHcCCEEEEecccc
Confidence 99999876 4899999999999999999887765322111 11133445678899999999999999988877
Q ss_pred cE
Q 020307 319 SF 320 (328)
Q Consensus 319 ~~ 320 (328)
.|
T Consensus 204 ~f 205 (218)
T PF05891_consen 204 GF 205 (218)
T ss_dssp T-
T ss_pred CC
Confidence 76
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-12 Score=115.25 Aligned_cols=126 Identities=14% Similarity=0.223 Sum_probs=97.4
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec---
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG--- 239 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~--- 239 (328)
.+|||+|||+|.++..++...+..+++|+|+|+.+++.|++++...++ ..++.++.+|+.+ +++..+||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~--~~~v~~~~~d~~~-~~~~~~fDlIvsNPPy 192 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL--EHRVEFIQSNLFE-PLAGQKIDIIVSNPPY 192 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchhc-cCcCCCccEEEECCCC
Confidence 689999999999999999988778999999999999999999887653 3459999999865 3444589999986
Q ss_pred ----------cccccCC------------ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCH
Q 020307 240 ----------AALHCWP------------SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTE 297 (328)
Q Consensus 240 ----------~vl~h~~------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (328)
.++.|-| ....+++++.+.|+|||++++..... ..
T Consensus 193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~-----------------------q~ 249 (284)
T TIGR00536 193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW-----------------------QQ 249 (284)
T ss_pred CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-----------------------HH
Confidence 2333333 23467889999999999998866321 23
Q ss_pred HHHHHHHH-HCCCeEEEE
Q 020307 298 EEIEDLCT-SCGLTNYTS 314 (328)
Q Consensus 298 ~~l~~ll~-~~Gf~~v~~ 314 (328)
+.+.+++. ..||..++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 250 KSLKELLRIKFTWYDVEN 267 (284)
T ss_pred HHHHHHHHhcCCCceeEE
Confidence 46677777 468876654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-12 Score=110.28 Aligned_cols=108 Identities=15% Similarity=0.172 Sum_probs=85.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++..+..+++++|+|+.+++.+++++...+ ..++.++.+|+.. ++.....+|.
T Consensus 36 l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~---~~~v~~~~~d~~~~~~~~~~~~d~ 112 (196)
T PRK07402 36 LRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG---VKNVEVIEGSAPECLAQLAPAPDR 112 (196)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCCeEEEECchHHHHhhCCCCCCE
Confidence 45567889999999999999999887666799999999999999999987765 4578999998854 2222234677
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++... ..+...+++++.++|+|||++++..++
T Consensus 113 v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 113 VCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred EEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 65532 235578999999999999999998754
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.2e-12 Score=111.94 Aligned_cols=126 Identities=13% Similarity=0.126 Sum_probs=97.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
...+|||+|||+|.++..++.+.+..+++|+|+++.+++.++++ .+++.++++|+..+. .+.+||+|+++-
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n--------~~~v~~v~~D~~e~~-~~~kFDlIIsNP 134 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL--------LPEAEWITSDVFEFE-SNEKFDVVISNP 134 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh--------CcCCEEEECchhhhc-ccCCCcEEEEcC
Confidence 45699999999999998888775456999999999999999875 447889999998765 356899999988
Q ss_pred ccccCCCh--------------------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHH
Q 020307 241 ALHCWPSP--------------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEI 300 (328)
Q Consensus 241 vl~h~~d~--------------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 300 (328)
-+.|.+.. ..+++....+|+|+|.+++.-...+ +. ..-++.+++
T Consensus 135 PF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~----------~y------~~sl~~~~y 198 (279)
T PHA03411 135 PFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP----------YY------DGTMKSNKY 198 (279)
T ss_pred CccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc----------cc------cccCCHHHH
Confidence 77775321 3566778889999997776632211 11 234678999
Q ss_pred HHHHHHCCCeE
Q 020307 301 EDLCTSCGLTN 311 (328)
Q Consensus 301 ~~ll~~~Gf~~ 311 (328)
+.+++++||..
T Consensus 199 ~~~l~~~g~~~ 209 (279)
T PHA03411 199 LKWSKQTGLVT 209 (279)
T ss_pred HHHHHhcCcEe
Confidence 99999999964
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-12 Score=109.07 Aligned_cols=162 Identities=20% Similarity=0.292 Sum_probs=120.3
Q ss_pred hhccCC-chHHHHHHhhHHhhhhcCCCCCcchh-hhcccc-CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHH
Q 020307 123 TELFRS-PFVSFLYERGWRQNFNRSGFPGPDEE-EYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLR 199 (328)
Q Consensus 123 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~ 199 (328)
.++|.. +..-..|+.+++.+...+........ ..+... ....|-|+|||.+.++. ... -.|+.+|+-
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~--~kV~SfDL~----- 208 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SER--HKVHSFDLV----- 208 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh---ccc--cceeeeeee-----
Confidence 344443 33445788999988887765444333 444443 45689999999987765 222 279999973
Q ss_pred HHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcch
Q 020307 200 QCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL 279 (328)
Q Consensus 200 ~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~ 279 (328)
..+-+++.+|+.++|+++++.|+++++.+|.- .|...+++|+.|+||+||.++|.+..
T Consensus 209 -------------a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~-------- 266 (325)
T KOG3045|consen 209 -------------AVNERVIACDMRNVPLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVK-------- 266 (325)
T ss_pred -------------cCCCceeeccccCCcCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehh--------
Confidence 34556788999999999999999998877653 58889999999999999999998843
Q ss_pred hhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEe-CcEEEEEEeCC
Q 020307 280 TGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ-QSFIMFAAQKP 328 (328)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~-~~~~~~~a~k~ 328 (328)
.++-+...+.+.+...||++...... .-|++|.++|+
T Consensus 267 ------------SRf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~ 304 (325)
T KOG3045|consen 267 ------------SRFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKKT 304 (325)
T ss_pred ------------hhcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEecC
Confidence 23445677999999999998886554 44677877763
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-12 Score=111.64 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=84.9
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++... +++++|+++++++.++++++..+ ..++.+..+|..+.....++||+|
T Consensus 74 l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~fD~I 148 (212)
T PRK00312 74 LELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLG---LHNVSVRHGDGWKGWPAYAPFDRI 148 (212)
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCC---CCceEEEECCcccCCCcCCCcCEE
Confidence 5566788999999999999988888754 89999999999999999988765 456999999985532234789999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
++...++++ .+.+.+.|+|||++++...
T Consensus 149 ~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 149 LVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 998877665 3567889999999998765
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-12 Score=113.18 Aligned_cols=134 Identities=22% Similarity=0.277 Sum_probs=101.5
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..+..+|||||+|+|.++..+++..|+.+++.+|. +..++.+++ ..++.++.+|+. -+++. +|+|++
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f-~~~P~--~D~~~l 164 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFF-DPLPV--ADVYLL 164 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------TTTEEEEES-TT-TCCSS--ESEEEE
T ss_pred ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------ccccccccccHH-hhhcc--ccceee
Confidence 34557999999999999999999999999999998 888888887 569999999997 55555 999999
Q ss_pred ccccccCCChH--HHHHHHHhcccCC--cEEEEEEeccCCCCcchhhH---HHHH---hhhccCCCCCHHHHHHHHH
Q 020307 239 GAALHCWPSPS--NAVAEISRILRSG--GVFVGTTFLRYTSSTSLTGR---VLRE---RILQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 239 ~~vl~h~~d~~--~~l~~~~r~Lkpg--G~l~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~l~~ll~ 305 (328)
.++||+++|.. .+|+++++.|+|| |+|+|.++..+......... .+.. .....-.-+|.++|+++|+
T Consensus 165 ~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 165 RHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEALLK 241 (241)
T ss_dssp ESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHHHHH
T ss_pred ehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHHHhC
Confidence 99999998774 7899999999999 99999998765333222111 1122 1112266778899988874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.4e-12 Score=108.97 Aligned_cols=135 Identities=13% Similarity=0.189 Sum_probs=107.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCccc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVD 234 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD 234 (328)
......++|||+|||+|..+..++++.+..+++|||+++.+.+.|++.++.+++ ..++.++++|+.++. ....+||
T Consensus 40 ~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l--~~ri~v~~~Di~~~~~~~~~~~fD 117 (248)
T COG4123 40 APVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL--EERIQVIEADIKEFLKALVFASFD 117 (248)
T ss_pred cccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc--hhceeEehhhHHHhhhcccccccC
Confidence 444557899999999999999999997678999999999999999999988765 789999999997764 3345799
Q ss_pred eEEeccccc----------------cC--CChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCC
Q 020307 235 AVHAGAALH----------------CW--PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLT 296 (328)
Q Consensus 235 ~i~~~~vl~----------------h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (328)
+|+|+=-.. |. .+.+..++...++|||||.+.++-+.. .
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e-----------------------r 174 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE-----------------------R 174 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-----------------------H
Confidence 999973211 11 123578899999999999999976421 2
Q ss_pred HHHHHHHHHHCCCeEEEEEE
Q 020307 297 EEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 297 ~~~l~~ll~~~Gf~~v~~~~ 316 (328)
..++.+++++.+|+..+...
T Consensus 175 l~ei~~~l~~~~~~~k~i~~ 194 (248)
T COG4123 175 LAEIIELLKSYNLEPKRIQF 194 (248)
T ss_pred HHHHHHHHHhcCCCceEEEE
Confidence 34788999999998877533
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.2e-12 Score=106.99 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=103.4
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc------C---cCCCCCeEEEEecCCCCCCC
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD------N---TILTSNLALVRADVCRLPFA 229 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~------~---~~~~~~i~~~~~d~~~lp~~ 229 (328)
..++.+||+.|||.|..+..|+++|. +|+|+|+|+..++.+.+..... + .....+++++++|+.+++..
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 34568999999999999999999988 8999999999999986632100 0 00135799999999988632
Q ss_pred ---CCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHH
Q 020307 230 ---SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLC 304 (328)
Q Consensus 230 ---~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 304 (328)
.+.||+|+-...+.+++.. .+..+.+.++|+|||.+++.+...... ........+.+++++++
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~------------~~GPPf~v~~~e~~~lf 186 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKK------------SQTPPYSVTQAELIKNF 186 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCC------------CCCCCCcCCHHHHHHhc
Confidence 3689999999999999644 478999999999999999888643210 00222335677888877
Q ss_pred HHC-CCeEEE
Q 020307 305 TSC-GLTNYT 313 (328)
Q Consensus 305 ~~~-Gf~~v~ 313 (328)
... .++.+.
T Consensus 187 ~~~~~i~~l~ 196 (226)
T PRK13256 187 SAKIKFELID 196 (226)
T ss_pred cCCceEEEee
Confidence 542 444433
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-11 Score=114.04 Aligned_cols=128 Identities=14% Similarity=0.140 Sum_probs=96.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-CCCccceEEec
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~i~~~ 239 (328)
++.+|||+|||+|.++..++...+..+++|+|+|+.+++.|++++...+ .++.++++|+.+..+ ..++||+|+++
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g----~rV~fi~gDl~e~~l~~~~~FDLIVSN 326 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG----ARVEFAHGSWFDTDMPSEGKWDIIVSN 326 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEcchhccccccCCCccEEEEC
Confidence 4569999999999999999988777799999999999999999987653 379999999865432 24579999995
Q ss_pred ccc-----ccCC------Ch--------------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCC
Q 020307 240 AAL-----HCWP------SP--------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNY 294 (328)
Q Consensus 240 ~vl-----~h~~------d~--------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (328)
--. .+.. +| ..+++.+.+.|+|||.+++....
T Consensus 327 PPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~----------------------- 383 (423)
T PRK14966 327 PPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF----------------------- 383 (423)
T ss_pred CCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-----------------------
Confidence 311 0000 11 25667777899999998774421
Q ss_pred CCHHHHHHHHHHCCCeEEEEE
Q 020307 295 LTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 295 ~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
-..+.+.+++++.||..++..
T Consensus 384 ~Q~e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 384 DQGAAVRGVLAENGFSGVETL 404 (423)
T ss_pred cHHHHHHHHHHHCCCcEEEEE
Confidence 124578899999999876643
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-11 Score=108.90 Aligned_cols=129 Identities=19% Similarity=0.244 Sum_probs=97.7
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|||+|||+|.++..++...+..+++|+|+|+.+++.+++++.. .. ..++.++.+|+... +..++||+|++
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~-~~--~~~i~~~~~d~~~~-~~~~~fD~Iv~ 181 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH-GL--GARVEFLQGDWFEP-LPGGRFDLIVS 181 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-CC--CCcEEEEEccccCc-CCCCceeEEEE
Confidence 3456799999999999999999998778999999999999999998872 11 46899999998542 33578999998
Q ss_pred cccc------c--------cCC------------ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccC
Q 020307 239 GAAL------H--------CWP------------SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNY 292 (328)
Q Consensus 239 ~~vl------~--------h~~------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (328)
+--. + |-+ ....+++++.++|+|||++++....
T Consensus 182 npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~--------------------- 240 (275)
T PRK09328 182 NPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY--------------------- 240 (275)
T ss_pred CCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---------------------
Confidence 5211 1 111 1245788888999999999984411
Q ss_pred CCCCHHHHHHHHHHCCCeEEEE
Q 020307 293 NYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 293 ~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
...+++++++++.||..++.
T Consensus 241 --~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 241 --DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred --hHHHHHHHHHHhCCCceeEE
Confidence 12346889999999986664
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.6e-12 Score=107.96 Aligned_cols=110 Identities=22% Similarity=0.286 Sum_probs=96.2
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCcc
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 233 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f 233 (328)
..+...++.+|||.|.|+|.++..|+.. ++..+|+.+|+.++..+.|+++++..++ ..++.+..+|+.+.-+.+ .|
T Consensus 88 ~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l--~d~v~~~~~Dv~~~~~~~-~v 164 (256)
T COG2519 88 ARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL--GDRVTLKLGDVREGIDEE-DV 164 (256)
T ss_pred HHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc--ccceEEEecccccccccc-cc
Confidence 4467789999999999999999999974 7778999999999999999999999875 455999999997765544 89
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
|+|+.. +++|..++..+.+.|||||.+++..|+.
T Consensus 165 Dav~LD-----mp~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 165 DAVFLD-----LPDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred CEEEEc-----CCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 999963 5899999999999999999999988764
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.1e-12 Score=105.47 Aligned_cols=105 Identities=18% Similarity=0.174 Sum_probs=89.4
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccc
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 234 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD 234 (328)
+.+...++.+|||||||+|+.+..+++... +|+.+|..+...+.|+++++..+ ..|+.++++|-..=--+.++||
T Consensus 66 ~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg---~~nV~v~~gDG~~G~~~~aPyD 140 (209)
T COG2518 66 QLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLG---YENVTVRHGDGSKGWPEEAPYD 140 (209)
T ss_pred HHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcC---CCceEEEECCcccCCCCCCCcC
Confidence 457788999999999999999999999875 99999999999999999999987 5679999999854322458999
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.|+.......+|++ +.+.||+||++++-.-
T Consensus 141 ~I~Vtaaa~~vP~~------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 141 RIIVTAAAPEVPEA------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEEEeeccCCCCHH------HHHhcccCCEEEEEEc
Confidence 99999988776443 5668999999999664
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-12 Score=110.04 Aligned_cols=106 Identities=18% Similarity=0.205 Sum_probs=82.5
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 234 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD 234 (328)
.+...++.+|||||||+|+++..++.. ++...|+++|+++..++.|++++...+ ..++.++.+|...-.-..++||
T Consensus 67 ~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~---~~nv~~~~gdg~~g~~~~apfD 143 (209)
T PF01135_consen 67 ALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG---IDNVEVVVGDGSEGWPEEAPFD 143 (209)
T ss_dssp HTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT---THSEEEEES-GGGTTGGG-SEE
T ss_pred HHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc---cCceeEEEcchhhccccCCCcC
Confidence 466788999999999999999999987 555579999999999999999999876 5699999999854333467899
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.|++......+| ..+.+.||+||++++-.-
T Consensus 144 ~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 144 RIIVTAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred EEEEeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 999998877553 336678999999998553
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.37 E-value=8e-12 Score=107.54 Aligned_cols=145 Identities=16% Similarity=0.183 Sum_probs=100.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
...++||||.|.|..+..++..+. +|++.|.|+.|....+++ ++.++ |..++.-.+.+||+|.|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k----------g~~vl--~~~~w~~~~~~fDvIscLN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK----------GFTVL--DIDDWQQTDFKFDVISCLN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC----------CCeEE--ehhhhhccCCceEEEeehh
Confidence 456899999999999999999876 899999999997665542 33333 3323333356899999999
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhh-HHHHHhhhccCCCCC----HHHHHHHHHHCCCeEEEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG-RVLRERILQNYNYLT----EEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~l~~ll~~~Gf~~v~~~ 315 (328)
+|..-.+|..+|+++++.|+|+|++++....+..+....-. +...+...-....-+ .+.+.+.++.+||++++ .
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~-~ 238 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVER-W 238 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEE-E
Confidence 99999999999999999999999999877655433332211 000000000000111 23455889999999887 5
Q ss_pred EeCcE
Q 020307 316 VQQSF 320 (328)
Q Consensus 316 ~~~~~ 320 (328)
..-+|
T Consensus 239 tr~PY 243 (265)
T PF05219_consen 239 TRLPY 243 (265)
T ss_pred eccCc
Confidence 54444
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-12 Score=108.32 Aligned_cols=121 Identities=21% Similarity=0.194 Sum_probs=83.4
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecccc
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 242 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl 242 (328)
..++|+|||+|..++.++.... +|+|+|+|+.|++.|++....... .....+...+...|--.++++|+|++...+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~--~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYC--HTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccc--cCCccccccccccccCCCcceeeehhhhhH
Confidence 3899999999988888998866 999999999999999885332111 112222222333332338899999999998
Q ss_pred ccCCChHHHHHHHHhcccCCc-EEEEEEeccCCCCcchhhHHHHHhh
Q 020307 243 HCWPSPSNAVAEISRILRSGG-VFVGTTFLRYTSSTSLTGRVLRERI 288 (328)
Q Consensus 243 ~h~~d~~~~l~~~~r~LkpgG-~l~i~~~~~~~~~~~~~~~~~~~~~ 288 (328)
|++ |.+++.+++.|+||++| .+.+-..+.+....+-....+....
T Consensus 111 HWF-dle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~ 156 (261)
T KOG3010|consen 111 HWF-DLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLY 156 (261)
T ss_pred Hhh-chHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHh
Confidence 876 77788999999998866 6666555533333333344444433
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.2e-12 Score=93.60 Aligned_cols=101 Identities=26% Similarity=0.381 Sum_probs=84.7
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-CCCccceEEecccc
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHAGAAL 242 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~i~~~~vl 242 (328)
+|+|+|||.|.++..+.+ ....+++++|+++..++.+++...... ..++.++..|+.+... ..++||+|++..++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALL---ADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhccc---ccceEEEEcChhhhccccCCceEEEEEccce
Confidence 589999999999999988 345699999999999998885433322 5678999999877653 46789999999999
Q ss_pred cc-CCChHHHHHHHHhcccCCcEEEEE
Q 020307 243 HC-WPSPSNAVAEISRILRSGGVFVGT 268 (328)
Q Consensus 243 ~h-~~d~~~~l~~~~r~LkpgG~l~i~ 268 (328)
++ ..++..+++.+.+.|+|||.+++.
T Consensus 77 ~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 98 777889999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=117.25 Aligned_cols=129 Identities=18% Similarity=0.216 Sum_probs=97.2
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC--CCCcc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--ASGFV 233 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--~~~~f 233 (328)
.+...++.+|||+|||+|..+..+++..+..+++++|+++.+++.++++++..++ ...+.+..+|....+. ..++|
T Consensus 233 ~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~--~~~v~~~~~d~~~~~~~~~~~~f 310 (426)
T TIGR00563 233 WLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL--TIKAETKDGDGRGPSQWAENEQF 310 (426)
T ss_pred HhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEecccccccccccccccc
Confidence 4566788999999999999999999875567999999999999999999988764 2234446677665443 46789
Q ss_pred ceEEec------cccccCCC----------------hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH
Q 020307 234 DAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE 286 (328)
Q Consensus 234 D~i~~~------~vl~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 286 (328)
|.|++. +++.+.++ ...+|+++.++|||||++++++.......+......+..
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~ 385 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ 385 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence 999953 55666655 257899999999999999999976654444443333333
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=107.87 Aligned_cols=165 Identities=13% Similarity=0.184 Sum_probs=125.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCCCccc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVD 234 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD 234 (328)
...-+||||.||.|..........+. .++.-.|.|+..++..++.+++.++ ..-+.|.++|+.+.. --+...+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL--~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL--EDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC--ccceEEEecCCCCHhHhhccCCCCC
Confidence 35679999999999998888887664 6899999999999999999999885 444599999986532 1234579
Q ss_pred eEEeccccccCCChH---HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH---hhhccCCCCCHHHHHHHHHHCC
Q 020307 235 AVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE---RILQNYNYLTEEEIEDLCTSCG 308 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~ll~~~G 308 (328)
+++.+.++|.++|-. ..|+.+.+.+.|||+++.+.-. .++...++.+.+.. ..+..+..-+..++.++++.+|
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQP-wHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aG 290 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQP-WHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAG 290 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCC-CCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcC
Confidence 999999999999854 5799999999999999886611 11222223333322 1234566889999999999999
Q ss_pred CeEEEE--EEeCcEEEEEEeC
Q 020307 309 LTNYTS--KVQQSFIMFAAQK 327 (328)
Q Consensus 309 f~~v~~--~~~~~~~~~~a~k 327 (328)
|+.+.. ...+.|.+-+|+|
T Consensus 291 F~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 291 FEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred CchhhheeccCCceEEEeecC
Confidence 987664 4456678888775
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-11 Score=104.10 Aligned_cols=143 Identities=20% Similarity=0.264 Sum_probs=100.8
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh-cCc--------CCCCCeEEEEecCCCCCCC
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-DNT--------ILTSNLALVRADVCRLPFA 229 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-~~~--------~~~~~i~~~~~d~~~lp~~ 229 (328)
..++.+||+.|||.|.-+..|+++|. +|+|+|+|+..++.+.+.... ... ....++.++++|+.+++..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 45677999999999999999999987 999999999999998543221 000 0134689999999887643
Q ss_pred C-CccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHH
Q 020307 230 S-GFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS 306 (328)
Q Consensus 230 ~-~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 306 (328)
. ++||+|+-...+.-++.. .+..+.+.++|+|||.+++.+....... ........+++++++++.
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~-----------~~GPPf~v~~~ev~~l~~- 180 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGE-----------MEGPPFSVTEEEVRELFG- 180 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSC-----------SSSSS----HHHHHHHHT-
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcC-----------CCCcCCCCCHHHHHHHhc-
Confidence 3 579999998888877532 5889999999999999555554322110 012334568899999999
Q ss_pred CCCeEEEEE
Q 020307 307 CGLTNYTSK 315 (328)
Q Consensus 307 ~Gf~~v~~~ 315 (328)
.+|++....
T Consensus 181 ~~f~i~~l~ 189 (218)
T PF05724_consen 181 PGFEIEELE 189 (218)
T ss_dssp TTEEEEEEE
T ss_pred CCcEEEEEe
Confidence 888876643
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.2e-11 Score=113.13 Aligned_cols=113 Identities=17% Similarity=0.254 Sum_probs=89.1
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCcc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFV 233 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~f 233 (328)
.+...++.+|||+|||+|..+..+++..+..+|+++|+++.+++.++++++..++ ++.++++|+.+++ +..++|
T Consensus 239 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~----~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 239 LLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL----KATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred HcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEcCcccchhhcccCCC
Confidence 4556688999999999999999999987557999999999999999999987653 4688999997754 345789
Q ss_pred ceEEecc------ccccCC------Ch----------HHHHHHHHhcccCCcEEEEEEecc
Q 020307 234 DAVHAGA------ALHCWP------SP----------SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 234 D~i~~~~------vl~h~~------d~----------~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
|.|++.- ++.+-+ .+ ..+|+.+.++|||||++++++...
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9999432 222211 12 268999999999999999988544
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-11 Score=116.76 Aligned_cols=128 Identities=13% Similarity=0.141 Sum_probs=97.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|.++..++...+..+++++|+|+.+++.|++++...++ ..++.++.+|+.. +++.++||+|+++-
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l--~~~v~~~~~D~~~-~~~~~~fDlIvsNP 214 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV--TDRIQIIHSNWFE-NIEKQKFDFIVSNP 214 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC--ccceeeeecchhh-hCcCCCccEEEECC
Confidence 34689999999999999999887778999999999999999999887654 4578999999754 23456899999842
Q ss_pred --------------ccccCCC------------hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCC
Q 020307 241 --------------ALHCWPS------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNY 294 (328)
Q Consensus 241 --------------vl~h~~d------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (328)
++.|-|. ...+++++.++|+|||.+++... +
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig-----------------------~ 271 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG-----------------------F 271 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC-----------------------C
Confidence 2222211 12467788899999999987541 1
Q ss_pred CCHHHHHHHHHHCCCeEEEE
Q 020307 295 LTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 295 ~~~~~l~~ll~~~Gf~~v~~ 314 (328)
-..+.+.+++++.||..++.
T Consensus 272 ~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 272 KQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred chHHHHHHHHHhcCCCceEE
Confidence 13457888899999986654
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-11 Score=116.17 Aligned_cols=114 Identities=18% Similarity=0.283 Sum_probs=93.2
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----CCC
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FAS 230 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~ 230 (328)
.+...++.+|||+|||+|..+..+++.. ...+++++|+++.+++.+++++...+ ..++.++.+|+..++ +..
T Consensus 247 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g---~~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 247 LLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG---LKSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred HhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC---CCeEEEEeCChhhccccccccc
Confidence 3556678999999999999999998873 34589999999999999999998876 457999999998765 445
Q ss_pred CccceEEec------cccccCCC----------------hHHHHHHHHhcccCCcEEEEEEecc
Q 020307 231 GFVDAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 231 ~~fD~i~~~------~vl~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
++||.|++. +++.+-++ ...+|.++.++|||||+++.++...
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 789999973 45655554 2477999999999999999988554
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.4e-12 Score=113.27 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=83.9
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++... ...|+++|+++++++.|++++...+ ..++.++.+|+...+...++||+
T Consensus 76 L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g---~~nV~~i~gD~~~~~~~~~~fD~ 152 (322)
T PRK13943 76 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG---IENVIFVCGDGYYGVPEFAPYDV 152 (322)
T ss_pred cCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCChhhcccccCCccE
Confidence 4455778999999999999999998753 2469999999999999999988766 45789999998765545578999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
|++...++++ ...+.+.|+|||++++..
T Consensus 153 Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 153 IFVTVGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EEECCchHHh------HHHHHHhcCCCCEEEEEe
Confidence 9998776654 234678999999988854
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-11 Score=105.72 Aligned_cols=130 Identities=20% Similarity=0.336 Sum_probs=102.4
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC---CC
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SG 231 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~ 231 (328)
.+...||.+|||.|.|+|.++..|++. +|.++|+.+|+.++..+.|+++++..++ ..++.+...|+.+..|. +.
T Consensus 35 ~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl--~~~v~~~~~Dv~~~g~~~~~~~ 112 (247)
T PF08704_consen 35 RLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL--DDNVTVHHRDVCEEGFDEELES 112 (247)
T ss_dssp HTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC--CTTEEEEES-GGCG--STT-TT
T ss_pred HcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC--CCCceeEecceecccccccccC
Confidence 467789999999999999999999975 7888999999999999999999999886 67899999999654442 36
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcc-cCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCe
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRIL-RSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~L-kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
.+|.|++. +|+|..++..+.++| ||||++.+..|+.. +. ....+.|++.||.
T Consensus 113 ~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie---------Qv-------------~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 113 DFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPCIE---------QV-------------QKTVEALREHGFT 165 (247)
T ss_dssp SEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESSHH---------HH-------------HHHHHHHHHTTEE
T ss_pred cccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCCHH---------HH-------------HHHHHHHHHCCCe
Confidence 79999863 589999999999999 99999999887632 11 2455778889998
Q ss_pred EEEE
Q 020307 311 NYTS 314 (328)
Q Consensus 311 ~v~~ 314 (328)
.++.
T Consensus 166 ~i~~ 169 (247)
T PF08704_consen 166 DIET 169 (247)
T ss_dssp EEEE
T ss_pred eeEE
Confidence 7764
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=104.34 Aligned_cols=101 Identities=22% Similarity=0.432 Sum_probs=83.5
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CC--CCCCccceEEec
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP--FASGFVDAVHAG 239 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp--~~~~~fD~i~~~ 239 (328)
..+||||||.|.++..++...|+..++|+|+....+..+.+++...+ ..|+.++++|+.. ++ ++++++|.|...
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~---l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG---LKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT---TSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc---ccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 38999999999999999999999999999999999999999998876 7899999999876 32 457899999875
Q ss_pred cccccCCCh-------------HHHHHHHHhcccCCcEEEEEEec
Q 020307 240 AALHCWPSP-------------SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 240 ~vl~h~~d~-------------~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+ ||| ..+|+.+.++|+|||.+.+.|-.
T Consensus 96 F-----PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 96 F-----PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp S----------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred C-----CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 4 666 37899999999999999998844
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.9e-11 Score=100.54 Aligned_cols=149 Identities=19% Similarity=0.237 Sum_probs=111.3
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCe-EEEEecCCCC--CC------CCCccc
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVCRL--PF------ASGFVD 234 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i-~~~~~d~~~l--p~------~~~~fD 234 (328)
+|||||||||....++++..|..+..-.|+++......+..+...++ +|+ .-+..|+... |. ..++||
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~---~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGL---PNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCC---cccCCCeEeecCCCCCccccccccCCCCcc
Confidence 69999999999999999999988999999999887666666665443 221 1233455443 22 246899
Q ss_pred eEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCc-----chhhHHHHHhhhccCCCCCHHHHHHHHHHC
Q 020307 235 AVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSST-----SLTGRVLRERILQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 235 ~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 307 (328)
+|++.+++|..+-. ..+++.+.++|++||.|++..|....... ..+...++... ..+...+.+++.++.+++
T Consensus 105 ~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rd-p~~GiRD~e~v~~lA~~~ 183 (204)
T PF06080_consen 105 AIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRD-PEWGIRDIEDVEALAAAH 183 (204)
T ss_pred eeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCC-CCcCccCHHHHHHHHHHC
Confidence 99999999988744 58899999999999999999987763221 12233344333 457788999999999999
Q ss_pred CCeEEEEEE
Q 020307 308 GLTNYTSKV 316 (328)
Q Consensus 308 Gf~~v~~~~ 316 (328)
||+.++...
T Consensus 184 GL~l~~~~~ 192 (204)
T PF06080_consen 184 GLELEEDID 192 (204)
T ss_pred CCccCcccc
Confidence 998777543
|
The function of this family is unknown. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-10 Score=102.78 Aligned_cols=141 Identities=16% Similarity=0.228 Sum_probs=102.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+....+.+|||+|||.|.++..+++..|..+++-+|+|...++.+++++..++ ..+..+...|... +..+ +||+|
T Consensus 154 l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~---~~~~~v~~s~~~~-~v~~-kfd~I 228 (300)
T COG2813 154 LPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG---VENTEVWASNLYE-PVEG-KFDLI 228 (300)
T ss_pred CCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC---CCccEEEEecccc-cccc-cccEE
Confidence 34445569999999999999999999999999999999999999999998875 3343556666543 2333 99999
Q ss_pred EeccccccCCCh-----HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 237 HAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 237 ~~~~vl~h~~d~-----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
+++=-+|-=.+. .+++++..+.|++||.|.++-.... .....|++.-=.+
T Consensus 229 isNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l-------------------------~y~~~L~~~Fg~v 283 (300)
T COG2813 229 ISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHL-------------------------PYEKKLKELFGNV 283 (300)
T ss_pred EeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCC-------------------------ChHHHHHHhcCCE
Confidence 998666533222 3789999999999999999774111 1222333331134
Q ss_pred EEEEEeCcEEEEEEeC
Q 020307 312 YTSKVQQSFIMFAAQK 327 (328)
Q Consensus 312 v~~~~~~~~~~~~a~k 327 (328)
........|.++.++|
T Consensus 284 ~~la~~~gf~Vl~a~k 299 (300)
T COG2813 284 EVLAKNGGFKVLRAKK 299 (300)
T ss_pred EEEEeCCCEEEEEEec
Confidence 4446677888888876
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-11 Score=114.46 Aligned_cols=126 Identities=16% Similarity=0.208 Sum_probs=95.6
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCcc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFV 233 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~f 233 (328)
.+...++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++++..+ ..++.+..+|...++ +.+++|
T Consensus 232 ~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g---~~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 232 LMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK---LSSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCeEEEEECchhhhhhhhhccC
Confidence 3556788899999999999999888863 45699999999999999999998876 346899999998765 446789
Q ss_pred ceEEec------cccccCCC----------------hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHH
Q 020307 234 DAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVL 284 (328)
Q Consensus 234 D~i~~~------~vl~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~ 284 (328)
|.|++. +++.+-++ ..++|.++.+.|||||+++.++.......+......+
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~f 381 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRF 381 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHH
Confidence 999963 22322221 1456899999999999999999765544443333333
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.9e-11 Score=106.13 Aligned_cols=127 Identities=18% Similarity=0.142 Sum_probs=94.9
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|..+..+++.. ....|+++|+++.+++.++++++..+ ..++.++..|...++...+.||.
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g---~~~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG---VLNVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC---CCcEEEecCCHHHhhhhccCCCE
Confidence 556678999999999999999988763 23589999999999999999998876 45789999998776655567999
Q ss_pred EEec------cccccCCCh----------------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH
Q 020307 236 VHAG------AALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE 286 (328)
Q Consensus 236 i~~~------~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 286 (328)
|++. .++.+-++. ..+|+.+.+.|||||+++.++.......+....+.+..
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~ 216 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLE 216 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHH
Confidence 9963 233222211 35899999999999999998866544333333333333
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=102.34 Aligned_cols=130 Identities=20% Similarity=0.225 Sum_probs=94.5
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-CC-CCCccceEEec
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF-ASGFVDAVHAG 239 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~-~~~~fD~i~~~ 239 (328)
+.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|++++... ++.++.+|+.+. +. ..++||+|+++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~------~~~~~~~D~~~~l~~~~~~~fDlVv~N 160 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA------GGTVHEGDLYDALPTALRGRVDILAAN 160 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCEEEEeechhhcchhcCCCEeEEEEC
Confidence 45899999999999999998876678999999999999999998753 247888998642 21 13579999986
Q ss_pred cc------cc--------cCC--------C----hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCC
Q 020307 240 AA------LH--------CWP--------S----PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYN 293 (328)
Q Consensus 240 ~v------l~--------h~~--------d----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (328)
-- +. |-+ | ...+++.+.++|||||++++.....
T Consensus 161 PPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~--------------------- 219 (251)
T TIGR03704 161 APYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER--------------------- 219 (251)
T ss_pred CCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc---------------------
Confidence 31 11 110 1 1366778889999999999866321
Q ss_pred CCCHHHHHHHHHHCCCeEEEEEEeCcE
Q 020307 294 YLTEEEIEDLCTSCGLTNYTSKVQQSF 320 (328)
Q Consensus 294 ~~~~~~l~~ll~~~Gf~~v~~~~~~~~ 320 (328)
..+++..++++.||.........-+
T Consensus 220 --~~~~v~~~l~~~g~~~~~~~~~~~~ 244 (251)
T TIGR03704 220 --QAPLAVEAFARAGLIARVASSEELY 244 (251)
T ss_pred --hHHHHHHHHHHCCCCceeeEccccc
Confidence 2347888999999976554443334
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.3e-11 Score=106.19 Aligned_cols=110 Identities=10% Similarity=0.134 Sum_probs=85.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-CCCCCccceEEe
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~i~~ 238 (328)
.++.+|||||||+|.++..+++..|..+++++|+++++++.|++.+...+. .+++.++.+|+.+. .-..++||+|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~--~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN--GERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC--CCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 356799999999999999999988888999999999999999998764321 46899999997542 222468999997
Q ss_pred cccc-ccCC---ChHHHHHHHHhcccCCcEEEEEEec
Q 020307 239 GAAL-HCWP---SPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 239 ~~vl-~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
...- ...+ ....+++++.+.|+|||++++....
T Consensus 143 D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 143 DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 5311 1111 1268899999999999999996543
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-10 Score=111.77 Aligned_cols=120 Identities=16% Similarity=0.177 Sum_probs=92.0
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 234 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD 234 (328)
.+...++.+|||+|||+|..+..+++.. ...+|+++|+|+.+++.++++++..+ ..++.++.+|+..++ ++++||
T Consensus 245 ~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g---~~~v~~~~~Da~~~~-~~~~fD 320 (445)
T PRK14904 245 LLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG---ITIIETIEGDARSFS-PEEQPD 320 (445)
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC---CCeEEEEeCcccccc-cCCCCC
Confidence 3556678899999999999998888753 24589999999999999999998876 347899999998765 456899
Q ss_pred eEEec------cccccCC------C----------hHHHHHHHHhcccCCcEEEEEEeccCCCCcch
Q 020307 235 AVHAG------AALHCWP------S----------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSL 279 (328)
Q Consensus 235 ~i~~~------~vl~h~~------d----------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~ 279 (328)
+|++. .++.+-+ + ...+|.++.+.|||||+++.++....+..+..
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~ 387 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENEL 387 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHH
Confidence 99963 2222111 1 13589999999999999999997654433333
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.5e-11 Score=100.06 Aligned_cols=98 Identities=21% Similarity=0.256 Sum_probs=74.7
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------CC
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA 229 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~ 229 (328)
..++.+|||+|||+|.++..+++.. +..+++++|+|+.+ . ..++.++++|+.+.+ ++
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~---------~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P---------IENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c---------CCCceEEEeeCCChhHHHHHHHHhC
Confidence 4578899999999999999888875 44579999999854 1 446788889986643 34
Q ss_pred CCccceEEecccc--------ccCC---ChHHHHHHHHhcccCCcEEEEEEe
Q 020307 230 SGFVDAVHAGAAL--------HCWP---SPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ~~~fD~i~~~~vl--------~h~~---d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.++||+|++.... +|.. +...+++.+.++|+|||++++..+
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 6689999986432 2211 125789999999999999999764
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.7e-10 Score=100.28 Aligned_cols=135 Identities=21% Similarity=0.275 Sum_probs=99.6
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc--c
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA--A 241 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~--v 241 (328)
+|||+|||+|..+..++...+..+|+|+|+|+.+++.|++++...++ .++.++.+|+..- . .++||+|+++= +
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l---~~~~~~~~dlf~~-~-~~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL---VRVLVVQSDLFEP-L-RGKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC---ccEEEEeeecccc-c-CCceeEEEeCCCCC
Confidence 79999999999999999999888999999999999999999998763 5667777776442 2 34899999971 1
Q ss_pred ---cccC------CCh--------------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHH
Q 020307 242 ---LHCW------PSP--------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEE 298 (328)
Q Consensus 242 ---l~h~------~d~--------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (328)
..+. .+| ..++.++.+.|+|||.+++..-. -..+
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~-----------------------~q~~ 244 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL-----------------------TQGE 244 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC-----------------------CcHH
Confidence 1111 122 35788899999999988886521 2356
Q ss_pred HHHHHHHHCC-CeEEEEEE--eCcEEEEEEe
Q 020307 299 EIEDLCTSCG-LTNYTSKV--QQSFIMFAAQ 326 (328)
Q Consensus 299 ~l~~ll~~~G-f~~v~~~~--~~~~~~~~a~ 326 (328)
.+.+++.+.| |..+.... .+...++.++
T Consensus 245 ~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~ 275 (280)
T COG2890 245 AVKALFEDTGFFEIVETLKDLFGRDRVVLAK 275 (280)
T ss_pred HHHHHHHhcCCceEEEEEecCCCceEEEEEE
Confidence 8999999999 66555333 2333444444
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.1e-10 Score=103.23 Aligned_cols=150 Identities=17% Similarity=0.160 Sum_probs=101.3
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH--HHh--cCcCCCCCeEEEEecCCC-CCCCCCcc
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF--IKQ--DNTILTSNLALVRADVCR-LPFASGFV 233 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~--~~~--~~~~~~~~i~~~~~d~~~-lp~~~~~f 233 (328)
.....+||++|||+|..++.+.+..+..+++++|+++++++.|++. +.. .+....+++.++.+|..+ +....++|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3456799999999999999999876567999999999999999962 111 011125799999999865 33345689
Q ss_pred ceEEeccccccCCC------hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHC
Q 020307 234 DAVHAGAALHCWPS------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 234 D~i~~~~vl~h~~d------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 307 (328)
|+|++... ..... -..+++.+.+.|+|||++++..... +.... ....+.+.++++
T Consensus 228 DVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp------~~~~~------------~~~~i~~tL~~a 288 (374)
T PRK01581 228 DVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP------ADAPL------------VYWSIGNTIEHA 288 (374)
T ss_pred cEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh------hhhHH------------HHHHHHHHHHHh
Confidence 99998732 11100 1468899999999999988864211 10000 012367889999
Q ss_pred CCeEEEEEEe-----CcEEEEEEeC
Q 020307 308 GLTNYTSKVQ-----QSFIMFAAQK 327 (328)
Q Consensus 308 Gf~~v~~~~~-----~~~~~~~a~k 327 (328)
||.+...... +.|...+|.|
T Consensus 289 f~~v~~y~t~vPsyg~~WgF~~as~ 313 (374)
T PRK01581 289 GLTVKSYHTIVPSFGTDWGFHIAAN 313 (374)
T ss_pred CCceEEEEEecCCCCCceEEEEEeC
Confidence 9977764332 2255555543
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-10 Score=110.10 Aligned_cols=113 Identities=21% Similarity=0.263 Sum_probs=88.7
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGF 232 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~ 232 (328)
.+...++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++++..+ ..++.++.+|+..++ ++ ++
T Consensus 245 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g---~~~v~~~~~D~~~~~~~~~-~~ 320 (444)
T PRK14902 245 ALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG---LTNIETKALDARKVHEKFA-EK 320 (444)
T ss_pred HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCCcccccchhc-cc
Confidence 3555678899999999999999998863 45699999999999999999998876 346999999997653 33 68
Q ss_pred cceEEecc------ccccCCCh----------------HHHHHHHHhcccCCcEEEEEEecc
Q 020307 233 VDAVHAGA------ALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 233 fD~i~~~~------vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
||+|++.- ++.+-++. ..+|+++.++|||||+++.++...
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 99999742 23322211 357999999999999999877543
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-10 Score=100.70 Aligned_cols=102 Identities=21% Similarity=0.304 Sum_probs=88.1
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCCCccceEEe
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVHA 238 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~i~~ 238 (328)
...+||||||.|.++..+|+..|+..++|+|+....+..|.+++...+ ..|+.+++.|+..+- +++++.|-|..
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~---l~Nlri~~~DA~~~l~~~~~~~sl~~I~i 125 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG---LKNLRLLCGDAVEVLDYLIPDGSLDKIYI 125 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC---CCcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence 358999999999999999999999999999999999999999999886 349999999985531 35569999997
Q ss_pred ccccccCCCh-------------HHHHHHHHhcccCCcEEEEEEec
Q 020307 239 GAALHCWPSP-------------SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 239 ~~vl~h~~d~-------------~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++ ||| ..+|+.+.++|||||.+.+.|-.
T Consensus 126 ~F-----PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 126 NF-----PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred EC-----CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 54 666 36899999999999999998844
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.1e-11 Score=106.95 Aligned_cols=112 Identities=26% Similarity=0.311 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC-------cCCCCCeEEEEecCCCCC----CC
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-------TILTSNLALVRADVCRLP----FA 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-------~~~~~~i~~~~~d~~~lp----~~ 229 (328)
++.+|||+|||.|.-+..+.... -..++|+|++...++.|+++..... ........++.+|..... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 67899999999988777777764 3589999999999999999983210 000235567888765321 22
Q ss_pred --CCccceEEeccccccCCCh----HHHHHHHHhcccCCcEEEEEEeccC
Q 020307 230 --SGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 230 --~~~fD~i~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
...||+|.|.+.||+.=.. ..+|+.+.+.|+|||+++.++|+..
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 3599999999999998433 3689999999999999999999764
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=2e-10 Score=96.45 Aligned_cols=129 Identities=19% Similarity=0.288 Sum_probs=102.2
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC---CCCccceEEec
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVDAVHAG 239 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD~i~~~ 239 (328)
-++|||||=+..+...-.. ..+|+.||+++. .-.+.+.|+.+.|. +++.||+|.++
T Consensus 53 lrlLEVGals~~N~~s~~~---~fdvt~IDLns~------------------~~~I~qqDFm~rplp~~~~e~FdvIs~S 111 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG---WFDVTRIDLNSQ------------------HPGILQQDFMERPLPKNESEKFDVISLS 111 (219)
T ss_pred ceEEeecccCCCCcccccC---ceeeEEeecCCC------------------CCCceeeccccCCCCCCcccceeEEEEE
Confidence 6999999976554433222 337999999752 33467789888775 46789999999
Q ss_pred cccccCCChH---HHHHHHHhcccCCcE-----EEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 240 AALHCWPSPS---NAVAEISRILRSGGV-----FVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 240 ~vl~h~~d~~---~~l~~~~r~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
.||+++|+|. ..++.+.+.|+|+|. |+++.|..- ..+.++++.+.|+++++..||..
T Consensus 112 LVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C---------------v~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 112 LVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC---------------VTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH---------------hhcccccCHHHHHHHHHhCCcEE
Confidence 9999999995 789999999999999 999887531 15678999999999999999999
Q ss_pred EEEEEeCcEEEEEEeC
Q 020307 312 YTSKVQQSFIMFAAQK 327 (328)
Q Consensus 312 v~~~~~~~~~~~~a~k 327 (328)
++.+.......+..+|
T Consensus 177 ~~~~~~~Kl~y~l~r~ 192 (219)
T PF11968_consen 177 VKYKKSKKLAYWLFRK 192 (219)
T ss_pred EEEEecCeEEEEEEee
Confidence 9987777776666554
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=104.42 Aligned_cols=110 Identities=15% Similarity=0.241 Sum_probs=84.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC--cCCCCCeEEEEecCCCC-CCCCCccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN--TILTSNLALVRADVCRL-PFASGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~~~~~i~~~~~d~~~l-p~~~~~fD~i 236 (328)
.++.+||+||||+|..++.+.+.....+|+++|+++.+++.|++.+...+ ....+++.++.+|+... ...+++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45679999999999999999887445689999999999999999886421 11157899999998542 2346789999
Q ss_pred EeccccccCCC----hHHHHHHHHhcccCCcEEEEEE
Q 020307 237 HAGAALHCWPS----PSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 237 ~~~~vl~h~~d----~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
++...-.+.+. ...+++.+.+.|+|||++++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 98643222221 1567899999999999998754
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.6e-10 Score=100.54 Aligned_cols=154 Identities=15% Similarity=0.153 Sum_probs=111.9
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccc
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 241 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~v 241 (328)
-...+|+|.|.|..+..+...+| .+-|++++...+-.++..+. +.+..+.+|...- .| +-|+|++-|+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~-~P--~~daI~mkWi 245 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQD-TP--KGDAIWMKWI 245 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-------CCcceeccccccc-CC--CcCeEEEEee
Confidence 36899999999999999999888 89999999988887777532 4578888887543 33 3469999999
Q ss_pred cccCCCh--HHHHHHHHhcccCCcEEEEEEeccCC--CC------cchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 242 LHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT--SS------TSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 242 l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
||||+|- .++|+++...|+|||.+++.+...+. .. ..+..+.+.......-...+.++++.++.++||.+
T Consensus 246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~ 325 (342)
T KOG3178|consen 246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPV 325 (342)
T ss_pred cccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCce
Confidence 9999877 48999999999999999999875442 11 11112222222223344568899999999999988
Q ss_pred EEEEE-eCcEEEEEEeC
Q 020307 312 YTSKV-QQSFIMFAAQK 327 (328)
Q Consensus 312 v~~~~-~~~~~~~~a~k 327 (328)
....- ...+.++.++|
T Consensus 326 ~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 326 CMVALTAYSYSVIEFHK 342 (342)
T ss_pred eEEEeccCccchheeCC
Confidence 87432 33344444443
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.3e-10 Score=92.78 Aligned_cols=103 Identities=10% Similarity=0.151 Sum_probs=78.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++.. ..++.++.+|+.++++++.+||.|
T Consensus 9 ~~~~~~~~vLEiG~G~G~lt~~l~~~~~--~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 9 ANLRPGDTVLEIGPGKGALTEELLERAA--RVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred cCCCCcCEEEEECCCccHHHHHHHhcCC--eEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCccccCCCEE
Confidence 4455678999999999999999999854 999999999999999988754 458999999999988777779999
Q ss_pred EeccccccCCChHHHHHHHHhc--ccCCcEEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRI--LRSGGVFVGTT 269 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~--LkpgG~l~i~~ 269 (328)
+++-- .|+. ...+..+.+. +.++|.+++..
T Consensus 82 i~n~P-y~~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 82 VGNLP-YNIS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred EECCC-cccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 87643 3332 3344444432 34677776644
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.2e-10 Score=110.08 Aligned_cols=133 Identities=17% Similarity=0.144 Sum_probs=94.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH--HHhcC--cCCCCCeEEEEecCCCC-CCCCCccc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF--IKQDN--TILTSNLALVRADVCRL-PFASGFVD 234 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~--~~~~~--~~~~~~i~~~~~d~~~l-p~~~~~fD 234 (328)
+++++|||+|||+|..++.+.+.....+++++|+++++++.++++ +...+ ....++++++.+|..+. ...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 456799999999999999998864336999999999999999983 32211 11146899999998652 22346899
Q ss_pred eEEeccccccCCCh-----HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCC
Q 020307 235 AVHAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL 309 (328)
Q Consensus 235 ~i~~~~vl~h~~d~-----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf 309 (328)
+|++...-...+.+ ..+++.+.+.|||||++++...... . .. -...++.+.+++.||
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~---~---~~------------~~~~~i~~~l~~~gf 437 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPY---F---AP------------KAFWSIEATLEAAGL 437 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcc---c---ch------------HHHHHHHHHHHHcCC
Confidence 99997543322222 3578999999999999988653211 0 00 011367888889999
Q ss_pred e
Q 020307 310 T 310 (328)
Q Consensus 310 ~ 310 (328)
.
T Consensus 438 ~ 438 (521)
T PRK03612 438 A 438 (521)
T ss_pred E
Confidence 3
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.5e-11 Score=100.04 Aligned_cols=147 Identities=21% Similarity=0.294 Sum_probs=112.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
....++|||||-|...+.+...+ -.+++-+|.|-.|++.+++.-.. .-.+....+|-+.++|.++++|+|+++.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp-----~i~~~~~v~DEE~Ldf~ens~DLiisSl 145 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDP-----SIETSYFVGDEEFLDFKENSVDLIISSL 145 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCC-----ceEEEEEecchhcccccccchhhhhhhh
Confidence 35689999999999999999987 55899999999999999874211 2345667789999999999999999999
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchh-----hHHHHH-hhhccCCCCC-HHHHHHHHHHCCCeEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT-----GRVLRE-RILQNYNYLT-EEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~-~~~l~~ll~~~Gf~~v~ 313 (328)
.+|++.|....+..+...|||+|.++.+....+. ...+. .+.-+. ....|...|+ ..++..+|.++||....
T Consensus 146 slHW~NdLPg~m~~ck~~lKPDg~FiasmlggdT-LyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~t 224 (325)
T KOG2940|consen 146 SLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDT-LYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLT 224 (325)
T ss_pred hhhhhccCchHHHHHHHhcCCCccchhHHhcccc-HHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccce
Confidence 9999999999999999999999999887655431 11110 000011 2225555554 57899999999998776
Q ss_pred E
Q 020307 314 S 314 (328)
Q Consensus 314 ~ 314 (328)
.
T Consensus 225 v 225 (325)
T KOG2940|consen 225 V 225 (325)
T ss_pred e
Confidence 4
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-09 Score=98.01 Aligned_cols=110 Identities=15% Similarity=0.198 Sum_probs=82.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC-cCCCCCeEEEEecCCC-CCCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCR-LPFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~-lp~~~~~fD~i~ 237 (328)
..+.+||+||||+|.++..+.+..+..+++++|+++++++.+++.+...+ ....+++.++.+|..+ +....++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 34569999999999999999887655689999999999999999875422 1114678888888643 222256899999
Q ss_pred eccccccCCC----hHHHHHHHHhcccCCcEEEEEE
Q 020307 238 AGAALHCWPS----PSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 238 ~~~vl~h~~d----~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+...-..-+. ...+++.+.+.|+|||++++..
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 8654222111 2577899999999999999863
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-09 Score=102.38 Aligned_cols=132 Identities=17% Similarity=0.282 Sum_probs=94.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC----CCCCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~ 232 (328)
+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++...+ ..++.++.+|+.+ .++.+++
T Consensus 293 l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~~---~~~v~~~~~d~~~~l~~~~~~~~~ 367 (443)
T PRK13168 293 LDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRNG---LDNVTFYHANLEEDFTDQPWALGG 367 (443)
T ss_pred hcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcC---CCceEEEEeChHHhhhhhhhhcCC
Confidence 4445678999999999999999998864 99999999999999999988765 4579999999854 2344568
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
||+|++.---. .....++.+.+ ++|+++++++..... + ..|+. .|.+.||++.
T Consensus 368 fD~Vi~dPPr~---g~~~~~~~l~~-~~~~~ivyvSCnp~t----------l------------aRDl~-~L~~~gY~l~ 420 (443)
T PRK13168 368 FDKVLLDPPRA---GAAEVMQALAK-LGPKRIVYVSCNPAT----------L------------ARDAG-VLVEAGYRLK 420 (443)
T ss_pred CCEEEECcCCc---ChHHHHHHHHh-cCCCeEEEEEeChHH----------h------------hccHH-HHhhCCcEEE
Confidence 99998742110 11345555555 689998888762110 0 12443 3456899988
Q ss_pred EEEEeCcE
Q 020307 313 TSKVQQSF 320 (328)
Q Consensus 313 ~~~~~~~~ 320 (328)
+....+-|
T Consensus 421 ~i~~~DmF 428 (443)
T PRK13168 421 RAGMLDMF 428 (443)
T ss_pred EEEEeccC
Confidence 87655544
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=4e-10 Score=98.38 Aligned_cols=109 Identities=13% Similarity=0.168 Sum_probs=86.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C-----CC
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-----FA 229 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-----~~ 229 (328)
....++++|||+|||+|..+..++.. .+..+++++|+++++++.|+++++..++ ..++.++.+|+.+. + .+
T Consensus 64 ~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl--~~~i~~~~gda~~~L~~l~~~~~ 141 (234)
T PLN02781 64 VKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV--DHKINFIQSDALSALDQLLNNDP 141 (234)
T ss_pred HHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEccHHHHHHHHHhCCC
Confidence 34557889999999999988888775 3467999999999999999999998876 56899999998553 2 12
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.++||+|+...-= +....++..+.++|+|||++++...
T Consensus 142 ~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 142 KPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 4689999975421 2335788999999999999887553
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-09 Score=111.05 Aligned_cols=132 Identities=14% Similarity=0.117 Sum_probs=96.7
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcC-------------CCCCeEEEEecCCCCCC
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-------------LTSNLALVRADVCRLPF 228 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-------------~~~~i~~~~~d~~~lp~ 228 (328)
+.+|||+|||+|..+..+++..+..+++|+|+|+.+++.|++++..+++. ...++.++++|+.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999887779999999999999999998764320 02479999999865321
Q ss_pred C-CCccceEEecc--------------ccccCC------------------Ch------HHHHHHHHhcccCCcEEEEEE
Q 020307 229 A-SGFVDAVHAGA--------------ALHCWP------------------SP------SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 229 ~-~~~fD~i~~~~--------------vl~h~~------------------d~------~~~l~~~~r~LkpgG~l~i~~ 269 (328)
. ...||+|+++= |.+|-| +. .+++.++.++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 23699999871 111111 01 467788888999999988755
Q ss_pred eccCCCCcchhhHHHHHhhhccCCCCCHHHHH-HHHHHCCCeEEEEEE
Q 020307 270 FLRYTSSTSLTGRVLRERILQNYNYLTEEEIE-DLCTSCGLTNYTSKV 316 (328)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ll~~~Gf~~v~~~~ 316 (328)
-.. ..+.+. +++++.||+.++.+.
T Consensus 279 G~~-----------------------q~~~v~~~l~~~~gf~~~~~~~ 303 (1082)
T PLN02672 279 GGR-----------------------PGQAVCERLFERRGFRITKLWQ 303 (1082)
T ss_pred Ccc-----------------------HHHHHHHHHHHHCCCCeeEEee
Confidence 211 124677 689999998877543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=110.06 Aligned_cols=130 Identities=18% Similarity=0.172 Sum_probs=95.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCccceEEe
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~i~~ 238 (328)
.++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.|++++..+++. ..++.++++|+.+.- -..++||+|++
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~ng~~-~~~v~~i~~D~~~~l~~~~~~fDlIil 614 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALNGLS-GRQHRLIQADCLAWLKEAREQFDLIFI 614 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCC-ccceEEEEccHHHHHHHcCCCcCEEEE
Confidence 3578999999999999999998753 36999999999999999999887641 147999999975421 11468999998
Q ss_pred cc-----------ccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHC
Q 020307 239 GA-----------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 239 ~~-----------vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 307 (328)
.- +.....+...+++.+.++|+|||.+++..... .++.+ .+.+.++
T Consensus 615 DPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~---------------------~~~~~--~~~~~~~ 671 (702)
T PRK11783 615 DPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR---------------------GFKMD--EEGLAKL 671 (702)
T ss_pred CCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc---------------------cCChh--HHHHHhC
Confidence 52 11112233567888899999999998865321 11111 6777888
Q ss_pred CCeEEEE
Q 020307 308 GLTNYTS 314 (328)
Q Consensus 308 Gf~~v~~ 314 (328)
|+.+...
T Consensus 672 g~~~~~i 678 (702)
T PRK11783 672 GLKAEEI 678 (702)
T ss_pred CCeEEEE
Confidence 9876654
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.3e-10 Score=99.50 Aligned_cols=113 Identities=25% Similarity=0.355 Sum_probs=88.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC-c--CCCCCeEEEEecCCC------CCCCC
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-T--ILTSNLALVRADVCR------LPFAS 230 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~--~~~~~i~~~~~d~~~------lp~~~ 230 (328)
.++..++|+|||.|.-+...-+.+ -..++|+||++-.+++|+++..... . ...-.+.|+.+|-.. +++++
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 467889999999998887777765 3489999999999999999886532 1 001246788888643 34556
Q ss_pred CccceEEeccccccCC----ChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 231 GFVDAVHAGAALHCWP----SPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~----d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
.+||+|-|-+++|+-- ....+|+.+.+.|||||+++.+.|+.+
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 6699999999988763 234789999999999999999999875
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-09 Score=97.26 Aligned_cols=110 Identities=16% Similarity=0.208 Sum_probs=83.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCc-CCCCCeEEEEecCCCC-C-CCCCccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-P-FASGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~~~~~i~~~~~d~~~l-p-~~~~~fD~i 236 (328)
.++++||+||||.|..++.+++.....+++.+|+++.+++.+++.+...+. ...+++.++.+|.... . .++++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 457899999999999999999874446899999999999999998764211 1257899999997432 1 225689999
Q ss_pred EeccccccCCC----hHHHHHHHHhcccCCcEEEEEE
Q 020307 237 HAGAALHCWPS----PSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 237 ~~~~vl~h~~d----~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
++...-.+.+. ...+++.+.+.|+|||+++...
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 98654322221 1367999999999999997754
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.6e-10 Score=93.11 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=106.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC--CCCCCccc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVD 234 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD 234 (328)
.+...+.+|||...|-|+++....++|. ..|+.+|.+++.++.|.-+-=..++. ..++.++.+|+.++ .|++.+||
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~-~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELF-EIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCcccc-ccccEEecccHHHHHhcCCccccc
Confidence 4556799999999999999999999973 48999999999999886542222221 34689999998654 37799999
Q ss_pred eEEeccc-cccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 235 AVHAGAA-LHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 235 ~i~~~~v-l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
+|+..-- +.+-. -...+.+|++|+|||||+++-.+-+..... +. .--+..+.+.|+++||++
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry--------rG-------~d~~~gVa~RLr~vGF~~ 272 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY--------RG-------LDLPKGVAERLRRVGFEV 272 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc--------cc-------CChhHHHHHHHHhcCcee
Confidence 9984210 00000 115788999999999999998875543111 11 012457788999999998
Q ss_pred EEEEEeCcEEEEEEeCC
Q 020307 312 YTSKVQQSFIMFAAQKP 328 (328)
Q Consensus 312 v~~~~~~~~~~~~a~k~ 328 (328)
++... ....+.|+||
T Consensus 273 v~~~~--~~~gv~A~k~ 287 (287)
T COG2521 273 VKKVR--EALGVVAVKP 287 (287)
T ss_pred eeeeh--hccceEEecC
Confidence 87332 2344566665
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=102.40 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=80.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--C--CCCccce
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F--ASGFVDA 235 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~--~~~~fD~ 235 (328)
.++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.|++++..+++. ..++.++.+|+.+.- + ..++||+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~Ngl~-~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLD-LSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 357899999999999988766544 458999999999999999999887641 147899999986531 1 2468999
Q ss_pred EEeccccccC---------CChHHHHHHHHhcccCCcEEEEEEe
Q 020307 236 VHAGAALHCW---------PSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 236 i~~~~vl~h~---------~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
|++.---.-- .+-..+++.+.++|+|||.++..+.
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9986321000 1123445567899999999998664
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-09 Score=90.98 Aligned_cols=147 Identities=18% Similarity=0.199 Sum_probs=95.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC----c--------------------------
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN----T-------------------------- 210 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~----~-------------------------- 210 (328)
.+..+|||||.+|.++..+++.+....++|+||++..++.|++.++.-- .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4578999999999999999999766789999999999999998765210 0
Q ss_pred ---------CCCCCeEEEEecCCCCCCCCCccceEEeccccccC----CC--hHHHHHHHHhcccCCcEEEEEEeccCCC
Q 020307 211 ---------ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW----PS--PSNAVAEISRILRSGGVFVGTTFLRYTS 275 (328)
Q Consensus 211 ---------~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~----~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~ 275 (328)
....|..+...|+. .+....||+|+|..+--++ .| ...+++.+.++|.|||+|++.. ..
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP-Qp--- 211 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP-QP--- 211 (288)
T ss_pred cccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC-Cc---
Confidence 00111222222232 2345679999987653222 23 3589999999999999998844 21
Q ss_pred Ccchh--hHHHHHh-hhccCCCCCHHHHHHHHHHC--CCeEEE
Q 020307 276 STSLT--GRVLRER-ILQNYNYLTEEEIEDLCTSC--GLTNYT 313 (328)
Q Consensus 276 ~~~~~--~~~~~~~-~~~~~~~~~~~~l~~ll~~~--Gf~~v~ 313 (328)
+..+. .+..... ......++.++.+..++.+. ||+.++
T Consensus 212 WksY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 212 WKSYKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred hHHHHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence 22220 1111111 11223467789999998877 666554
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.1e-09 Score=90.80 Aligned_cols=148 Identities=20% Similarity=0.166 Sum_probs=109.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh----cC--------------------------
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ----DN-------------------------- 209 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~----~~-------------------------- 209 (328)
....+||--|||.|+++..++..|. .+.|.|.|--|+-...-.+.. ..
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 3457999999999999999999987 999999999887654432210 00
Q ss_pred -------cCCCCCeEEEEecCCCCCCCC---CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcch
Q 020307 210 -------TILTSNLALVRADVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL 279 (328)
Q Consensus 210 -------~~~~~~i~~~~~d~~~lp~~~---~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~ 279 (328)
+....++....||+.++...+ ++||+|+..+-|.--++....++.|.++|||||+++=..|..+.....
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~- 211 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM- 211 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC-
Confidence 011346778888887765444 799999999888877788899999999999999888766655422110
Q ss_pred hhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE
Q 020307 280 TGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
. ......--++.+++..+++..||++++...
T Consensus 212 -----~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 212 -----S-IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred -----C-CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0 011223568999999999999999887544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.5e-09 Score=93.98 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=101.5
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe-cCCCCCCCCCccc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVD 234 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD 234 (328)
+....+|..|||-=||||.++..+.-.|. +++|.|++..|++-|+.+++..+ .....+... |+.++|+++.++|
T Consensus 192 La~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y~---i~~~~~~~~~Da~~lpl~~~~vd 266 (347)
T COG1041 192 LARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYYG---IEDYPVLKVLDATNLPLRDNSVD 266 (347)
T ss_pred HhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhhC---cCceeEEEecccccCCCCCCccc
Confidence 34556889999999999999999998876 99999999999999999998865 345656665 9999999988999
Q ss_pred eEEeccccc-----cCCC----hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHH
Q 020307 235 AVHAGAALH-----CWPS----PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 235 ~i~~~~vl~-----h~~d----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 305 (328)
.|++.---- .... -..+|+.+.++||+||++++..+. .....++
T Consensus 267 aIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~---------------------------~~~~~~~ 319 (347)
T COG1041 267 AIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR---------------------------DPRHELE 319 (347)
T ss_pred eEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC---------------------------cchhhHh
Confidence 999842110 0011 147899999999999999997752 2235578
Q ss_pred HCCCeEEEEEE
Q 020307 306 SCGLTNYTSKV 316 (328)
Q Consensus 306 ~~Gf~~v~~~~ 316 (328)
..||+++....
T Consensus 320 ~~~f~v~~~~~ 330 (347)
T COG1041 320 ELGFKVLGRFT 330 (347)
T ss_pred hcCceEEEEEE
Confidence 89998887644
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-09 Score=89.87 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=69.9
Q ss_pred CCCeEEEEcCCcCH----HHHHHHHh-----CCCceEEEEeCCHHHHHHHHHHH-------------------HhcC-c-
Q 020307 161 QGGLLVDVSCGSGL----FSRKFAKS-----GTYSGVVALDFSENMLRQCYDFI-------------------KQDN-T- 210 (328)
Q Consensus 161 ~~~~vLDiGcG~G~----~~~~l~~~-----~~~~~v~g~D~s~~~~~~a~~~~-------------------~~~~-~- 210 (328)
+.-+|+.+||++|. ++..+.+. ....+++|+|+|+.+++.|++-. ...+ .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45699999999997 33333341 12468999999999999998311 0000 0
Q ss_pred ----CCCCCeEEEEecCCCCCCCCCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEE
Q 020307 211 ----ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 211 ----~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.....+.|...|+.+.+...+.||+|+|.+||-++... .++++.+.+.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 01247899999998744456789999999999999766 588999999999999999954
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.8e-09 Score=94.09 Aligned_cols=102 Identities=12% Similarity=0.147 Sum_probs=75.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-CCCccceEEe
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~i~~ 238 (328)
.++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++++..+ ..++.++++|+.++.. ..+.||+|++
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~~---l~~v~~~~~D~~~~~~~~~~~~D~Vv~ 246 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAELG---LTNVQFQALDSTQFATAQGEVPDLVLV 246 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHcC---CCceEEEEcCHHHHHHhcCCCCeEEEE
Confidence 3568999999999999999999764 99999999999999999998766 4579999999976532 2357999997
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.-- .- .....+.++...++|+++++++.
T Consensus 247 dPP--r~-G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 247 NPP--RR-GIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred CCC--CC-CccHHHHHHHHHcCCCeEEEEEC
Confidence 621 00 01122333344467887777765
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.2e-09 Score=90.42 Aligned_cols=95 Identities=16% Similarity=0.232 Sum_probs=72.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhC---CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSG---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
.+.+|||+|||+|.++..+++.. +..+++++|+++.+++.|+++ ..++.++.+|+...++ +++||+|+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n--------~~~~~~~~~D~~~~~~-~~~FDlII 119 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI--------VPEATWINADALTTEF-DTLFDMAI 119 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh--------ccCCEEEEcchhcccc-cCCccEEE
Confidence 36799999999999999988752 245899999999999999975 4468899999977654 56899999
Q ss_pred eccccccC--CC----------hHHHHHHHHhcccCCcE
Q 020307 238 AGAALHCW--PS----------PSNAVAEISRILRSGGV 264 (328)
Q Consensus 238 ~~~vl~h~--~d----------~~~~l~~~~r~LkpgG~ 264 (328)
++==..-. .+ ...+++.+.+++++|+.
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 97322111 11 24578888886677664
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.5e-09 Score=90.22 Aligned_cols=112 Identities=14% Similarity=0.167 Sum_probs=90.0
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE-ecCCC-CC-CCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCR-LP-FASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~~-lp-~~~~~ 232 (328)
+...+.++|||||.+.|+.+..++...+ +.+++.+|++++..+.|++++++.++ ..++..+. +|..+ +. ...++
T Consensus 55 ~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~--~~~i~~~~~gdal~~l~~~~~~~ 132 (219)
T COG4122 55 ARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV--DDRIELLLGGDALDVLSRLLDGS 132 (219)
T ss_pred HHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC--cceEEEEecCcHHHHHHhccCCC
Confidence 3455788999999999999999999876 78999999999999999999999986 56688888 47633 22 34689
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
||+|+....= .+-..++..+.++|+|||++++-.....
T Consensus 133 fDliFIDadK---~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 133 FDLVFIDADK---ADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred ccEEEEeCCh---hhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 9999964421 1336789999999999999998665544
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.4e-09 Score=102.48 Aligned_cols=103 Identities=14% Similarity=0.188 Sum_probs=87.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~i~ 237 (328)
..+..+||||||.|.++..++...|+..++|+|++...+..+.++....+ ..|+.++..|+..+. ++++++|.|+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~---l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN---ITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC---CCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 34678999999999999999999999999999999999999988887766 568888888874332 6688899999
Q ss_pred eccccccCCCh-------------HHHHHHHHhcccCCcEEEEEEe
Q 020307 238 AGAALHCWPSP-------------SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 238 ~~~vl~h~~d~-------------~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.++ ||| ..+|+.+.++|||||.+.+.|-
T Consensus 423 i~F-----PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 423 ILF-----PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred EEC-----CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 754 565 3689999999999999999883
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.8e-09 Score=93.60 Aligned_cols=108 Identities=13% Similarity=0.178 Sum_probs=79.8
Q ss_pred CCeEEEEcCCcCH----HHHHHHHhC----CCceEEEEeCCHHHHHHHHHHH------------------Hhc-----C-
Q 020307 162 GGLLVDVSCGSGL----FSRKFAKSG----TYSGVVALDFSENMLRQCYDFI------------------KQD-----N- 209 (328)
Q Consensus 162 ~~~vLDiGcG~G~----~~~~l~~~~----~~~~v~g~D~s~~~~~~a~~~~------------------~~~-----~- 209 (328)
.-+|+..||++|. ++..+.+.. ...+++|+|+|+.+++.|++-. ... +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3699999999997 333333432 1357999999999999998541 000 0
Q ss_pred --c--CCCCCeEEEEecCCCCCCC-CCccceEEeccccccCCC--hHHHHHHHHhcccCCcEEEEEE
Q 020307 210 --T--ILTSNLALVRADVCRLPFA-SGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 210 --~--~~~~~i~~~~~d~~~lp~~-~~~fD~i~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+ .....+.|...|+...+++ .+.||+|+|.+|+.|+.. ..++++.+.+.|+|||+|++-.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 0 0124678889998775433 578999999999999965 4689999999999999988744
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.6e-09 Score=91.64 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=87.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CC-C----C
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-F----A 229 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-~----~ 229 (328)
+...+.++|||||+++|+.+..++... +...++.+|.+++..+.|++.++..|+ ..++.++.+|+.+ ++ + .
T Consensus 114 ~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl--~~~I~li~GdA~e~L~~l~~~~~ 191 (278)
T PLN02476 114 VQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV--SHKVNVKHGLAAESLKSMIQNGE 191 (278)
T ss_pred HHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHhccc
Confidence 345578899999999999999998753 356899999999999999999999886 5689999999844 22 1 1
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
.++||+|+...-= .+-..++..+.++|+|||++++-...
T Consensus 192 ~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 192 GSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred CCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 3689999975531 13357789999999999998885543
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.3e-09 Score=85.57 Aligned_cols=114 Identities=20% Similarity=0.183 Sum_probs=76.2
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-C--C-CCCCccc
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L--P-FASGFVD 234 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-l--p-~~~~~fD 234 (328)
..++.+|||+|||+|..+..++......+|+..|.++ .++..+.+++.++.....++.+...|..+ . . ....+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 3467899999999999999999984456999999999 99999998877541114567777776643 1 1 2346899
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
+|+...+++.-.....+++.+.++|+|+|.+++....+.
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R~ 160 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRRR 160 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S-
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEec
Confidence 999999998776778899999999999999777776553
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.9e-09 Score=89.26 Aligned_cols=109 Identities=14% Similarity=0.210 Sum_probs=86.4
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CC-----CCC
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-----FAS 230 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-----~~~ 230 (328)
...+.++|||||+++|+.+..+++..+ +++++.+|++++..+.|++.++..++ ..+++++.+|+.+ ++ ...
T Consensus 42 ~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~--~~~I~~~~gda~~~l~~l~~~~~~ 119 (205)
T PF01596_consen 42 RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL--DDRIEVIEGDALEVLPELANDGEE 119 (205)
T ss_dssp HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG--GGGEEEEES-HHHHHHHHHHTTTT
T ss_pred HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC--CCcEEEEEeccHhhHHHHHhccCC
Confidence 345678999999999999999998754 57999999999999999999998876 5789999999854 22 113
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++||+|+...-= .+-...+..+.++|+|||.+++-...
T Consensus 120 ~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 120 GQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp TSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred CceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEcccc
Confidence 589999976531 13457788999999999999986543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-08 Score=96.02 Aligned_cols=105 Identities=16% Similarity=0.289 Sum_probs=79.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC----CCCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~ 232 (328)
+...++.+|||+|||+|.++..+++... +|+|+|+++.+++.|++++...+ ..++.++.+|+.+. ++.+++
T Consensus 288 l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~---~~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 288 LELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNG---IANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred hccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhC---CCceEEEeCCHHHHHHHHHhcCCC
Confidence 3445678999999999999999998865 89999999999999999988766 46899999998642 233567
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
||+|++.-- ...-...+++.+.+ ++|++.++++.
T Consensus 363 ~D~vi~dPP--r~G~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 363 PDVLLLDPP--RKGCAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred CCEEEECcC--CCCCCHHHHHHHHh-cCCCEEEEEcC
Confidence 999996432 01112455666554 88988877754
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-09 Score=102.23 Aligned_cols=126 Identities=25% Similarity=0.362 Sum_probs=84.5
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEE---eCCHHHHHHHHHHHHhcCcCCCCCeEEEEec--CCCCCCCCCccceEE
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVAL---DFSENMLRQCYDFIKQDNTILTSNLALVRAD--VCRLPFASGFVDAVH 237 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~---D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d--~~~lp~~~~~fD~i~ 237 (328)
..+||+|||+|.|+..|.+++- .+..+ |..+..++.|.++ .+..+.+- ...+||++++||+|.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V--~t~s~a~~d~~~~qvqfaleR----------Gvpa~~~~~~s~rLPfp~~~fDmvH 186 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNV--TTMSFAPNDEHEAQVQFALER----------GVPAMIGVLGSQRLPFPSNAFDMVH 186 (506)
T ss_pred EEEEeccceeehhHHHHhhCCc--eEEEcccccCCchhhhhhhhc----------CcchhhhhhccccccCCccchhhhh
Confidence 4789999999999999999852 22222 3444555555543 23333333 468999999999999
Q ss_pred eccccccCC-ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 238 AGAALHCWP-SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 238 ~~~vl~h~~-d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
|..++-.+. +-..+|-++.|+|+|||+++.+.+-.+... .+.... ....+.++.+..-++.+.
T Consensus 187 csrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~----~~~~~~---------~~~~~~~l~~~lCW~~va 250 (506)
T PF03141_consen 187 CSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRT----DEDLEE---------EWNAMEDLAKSLCWKKVA 250 (506)
T ss_pred cccccccchhcccceeehhhhhhccCceEEecCCcccccc----hHHHHH---------HHHHHHHHHHHHHHHHhe
Confidence 999986664 335789999999999999999886543100 000000 124567777777777665
|
; GO: 0008168 methyltransferase activity |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-08 Score=85.65 Aligned_cols=106 Identities=11% Similarity=0.092 Sum_probs=77.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCCCCCccceEEec
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~i~~~ 239 (328)
++.+|||+|||+|.++..++.++ ..+|+++|.++.+++.++++++..+ ..++.++.+|+.+ ++....+||+|++.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~---~~~v~~~~~D~~~~l~~~~~~fDlV~~D 128 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLK---AGNARVVNTNALSFLAQPGTPHNVVFVD 128 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhC---CCcEEEEEchHHHHHhhcCCCceEEEEC
Confidence 56799999999999998765554 3589999999999999999988766 3479999999854 22224579999986
Q ss_pred cccccCCChHHHHHHHHh--cccCCcEEEEEEec
Q 020307 240 AALHCWPSPSNAVAEISR--ILRSGGVFVGTTFL 271 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r--~LkpgG~l~i~~~~ 271 (328)
=-.. -.-...+++.+.. +|+|++++++....
T Consensus 129 PPy~-~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 129 PPFR-KGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCCC-CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 4321 1112345555554 37899988887643
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.6e-09 Score=90.80 Aligned_cols=100 Identities=25% Similarity=0.408 Sum_probs=81.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
..+..++|+|||.|..+. ..|..-++|.|++...+..+++ ........+|+.++|+++.+||.+++.
T Consensus 44 ~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~---------~~~~~~~~ad~l~~p~~~~s~d~~lsi 110 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKR---------SGGDNVCRADALKLPFREESFDAALSI 110 (293)
T ss_pred CCcceeeecccCCcccCc----CCCcceeeecchhhhhcccccc---------CCCceeehhhhhcCCCCCCccccchhh
Confidence 357789999999996553 2255679999999998888775 222267889999999999999999999
Q ss_pred cccccCCCh---HHHHHHHHhcccCCcEEEEEEecc
Q 020307 240 AALHCWPSP---SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 240 ~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
.|+||+..- ..+++++.|+|+|||...+..+..
T Consensus 111 avihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 111 AVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 999999754 478999999999999977766543
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.6e-09 Score=94.76 Aligned_cols=111 Identities=27% Similarity=0.367 Sum_probs=96.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++..++|+|||.|.....++... ...++|+|.++..+..+.......++ ...-.++.+|+.+.|++++.||.+-+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~~l--~~k~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKAYL--DNKCNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred cccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHHHh--hhhcceehhhhhcCCCCccccCcEEEE
Confidence 466689999999999999988875 46899999999999888877766554 344555889999999999999999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
.+.+|.+++..+++|+.|++||||++++.+....
T Consensus 186 d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 186 EVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred eecccCCcHHHHHHHHhcccCCCceEEeHHHHHh
Confidence 9999999999999999999999999999877654
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.2e-08 Score=90.99 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=76.8
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-CCCccceEEe
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~i~~ 238 (328)
.++.+|||++||+|.++..++..+. +|+|+|+++.+++.|+++++..+ ..++.++.+|+.+... ..++||+|++
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~--~v~~vE~~~~av~~a~~N~~~~~---~~~~~~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDT--QLTGIEIESEAIACAQQSAQMLG---LDNLSFAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCC--eEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence 3567999999999999999997764 89999999999999999988766 3489999999865321 1246999987
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.=--. .-...+++.+. .++|++.++++.
T Consensus 307 DPPr~--G~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 307 NPPRR--GIGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCCCC--CCcHHHHHHHH-hcCCCeEEEEEe
Confidence 52211 11134555554 479999888876
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.9e-08 Score=89.25 Aligned_cols=76 Identities=14% Similarity=0.274 Sum_probs=64.2
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.+. +++|+|+++.+++.+++++.. ..++.++.+|+.+++++ .||.|
T Consensus 25 ~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~~~~~--~~d~V 95 (258)
T PRK14896 25 AEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALKVDLP--EFNKV 95 (258)
T ss_pred cCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhcc-----CCCEEEEEeccccCCch--hceEE
Confidence 4455788999999999999999999864 899999999999999987754 35899999999887764 48998
Q ss_pred Eeccc
Q 020307 237 HAGAA 241 (328)
Q Consensus 237 ~~~~v 241 (328)
+++--
T Consensus 96 v~NlP 100 (258)
T PRK14896 96 VSNLP 100 (258)
T ss_pred EEcCC
Confidence 88644
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.2e-08 Score=83.71 Aligned_cols=108 Identities=22% Similarity=0.325 Sum_probs=78.5
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCce---------EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSG---------VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 229 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~---------v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 229 (328)
..++..|||--||+|.++.+.+..+.+.. ++|.|+++.+++.++++++..+. ...+.+...|+.++++.
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~--~~~i~~~~~D~~~l~~~ 103 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV--EDYIDFIQWDARELPLP 103 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---CGGEEEEE--GGGGGGT
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc--CCceEEEecchhhcccc
Confidence 45678999999999999998887765545 88999999999999999998775 56789999999999977
Q ss_pred CCccceEEeccccccC-CCh-------HHHHHHHHhcccCCcEEEEEE
Q 020307 230 SGFVDAVHAGAALHCW-PSP-------SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~-~d~-------~~~l~~~~r~LkpgG~l~i~~ 269 (328)
++++|+|+++--.-.- .+. ..+++++.++|++ ..+++.+
T Consensus 104 ~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 104 DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 8899999986332111 111 3568899999999 4344433
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.4e-08 Score=84.61 Aligned_cols=108 Identities=13% Similarity=0.134 Sum_probs=80.8
Q ss_pred CCeEEEEcCCcCH----HHHHHHHhCC-----CceEEEEeCCHHHHHHHHHHHHh-----cCc-----------------
Q 020307 162 GGLLVDVSCGSGL----FSRKFAKSGT-----YSGVVALDFSENMLRQCYDFIKQ-----DNT----------------- 210 (328)
Q Consensus 162 ~~~vLDiGcG~G~----~~~~l~~~~~-----~~~v~g~D~s~~~~~~a~~~~~~-----~~~----------------- 210 (328)
.-+|+-+||++|. ++..+.+.++ ..+++|.|+|..+++.|+.-.=. .++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5699999999996 4444445442 57899999999999999731100 111
Q ss_pred ----CCCCCeEEEEecCCCCCCCCCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEE
Q 020307 211 ----ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 211 ----~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.....|.|...|+...++..+.||+|+|.+||-++..+ .++++.++..|+|||+|++-.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 01235778888886655346779999999999999766 488999999999999999954
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-08 Score=90.26 Aligned_cols=103 Identities=18% Similarity=0.279 Sum_probs=82.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
-+++.|||+|||+|-++...++.| ..+|+++|.|. +++.|++.+..+++ ...++++.+.++++.+|..++|+|++-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~-ia~~a~~iv~~N~~--~~ii~vi~gkvEdi~LP~eKVDiIvSE 134 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASS-IADFARKIVKDNGL--EDVITVIKGKVEDIELPVEKVDIIVSE 134 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechH-HHHHHHHHHHhcCc--cceEEEeecceEEEecCccceeEEeeh
Confidence 468899999999999999999998 56899999876 45899998888775 556899999998876667899999986
Q ss_pred cccccC---CChHHHHHHHHhcccCCcEEE
Q 020307 240 AALHCW---PSPSNAVAEISRILRSGGVFV 266 (328)
Q Consensus 240 ~vl~h~---~d~~~~l~~~~r~LkpgG~l~ 266 (328)
|.=..+ .-...+|-.=-+.|+|||.++
T Consensus 135 WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 135 WMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 653222 123456666678999999875
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.9e-08 Score=90.91 Aligned_cols=102 Identities=15% Similarity=0.264 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhC----CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSG----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~----~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
++..|||||||+|-++...++.+ ...+|+++|-++.+....++++...+. ..+|+++.+|++++..++ ++|+|
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w--~~~V~vi~~d~r~v~lpe-kvDII 262 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW--GDKVTVIHGDMREVELPE-KVDII 262 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT--TTTEEEEES-TTTSCHSS--EEEE
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC--CCeEEEEeCcccCCCCCC-ceeEE
Confidence 35789999999999987776653 345899999999988887777666654 678999999999987654 89999
Q ss_pred EeccccccCC---ChHHHHHHHHhcccCCcEEE
Q 020307 237 HAGAALHCWP---SPSNAVAEISRILRSGGVFV 266 (328)
Q Consensus 237 ~~~~vl~h~~---d~~~~l~~~~r~LkpgG~l~ 266 (328)
++-.. ..+. --...|....|.|||||+++
T Consensus 263 VSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 263 VSELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 97432 1221 12356889999999999874
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-07 Score=85.83 Aligned_cols=80 Identities=13% Similarity=0.087 Sum_probs=61.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEE-ecCCCCC----CCCCccc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVR-ADVCRLP----FASGFVD 234 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~-~d~~~lp----~~~~~fD 234 (328)
++.++||||||+|.....++...+..+++|+|+++.+++.|++++... ++ ..++.+.. .|...+. .+.+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l--~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL--NGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC--cCcEEEEEccchhhhhhcccccCCceE
Confidence 567999999999988888877766779999999999999999999886 54 45677754 3332221 2366899
Q ss_pred eEEecccc
Q 020307 235 AVHAGAAL 242 (328)
Q Consensus 235 ~i~~~~vl 242 (328)
+|+|+==+
T Consensus 192 livcNPPf 199 (321)
T PRK11727 192 ATLCNPPF 199 (321)
T ss_pred EEEeCCCC
Confidence 99998543
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.8e-08 Score=80.78 Aligned_cols=119 Identities=19% Similarity=0.196 Sum_probs=85.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
..+.+|+|+|||||.++...+-.|+ .+|+|+|+++++++.++++..+. ..++.|+++|+... .+.+|.++++
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l----~g~v~f~~~dv~~~---~~~~dtvimN 115 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEEL----LGDVEFVVADVSDF---RGKFDTVIMN 115 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhh----CCceEEEEcchhhc---CCccceEEEC
Confidence 4677999999999999999998884 48999999999999999998872 66899999999886 4678988876
Q ss_pred cc----cccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 240 AA----LHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 240 ~v----l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
=- ..| .|. .+|....+.- ..+.+-.+ .-+.+-+++..+.+|+++...
T Consensus 116 PPFG~~~rh-aDr-~Fl~~Ale~s----~vVYsiH~----------------------a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 116 PPFGSQRRH-ADR-PFLLKALEIS----DVVYSIHK----------------------AGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred CCCcccccc-CCH-HHHHHHHHhh----heEEEeec----------------------cccHHHHHHHHHhcCCeEEEE
Confidence 22 233 333 3333333322 11111111 125677888899999876654
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-08 Score=89.22 Aligned_cols=75 Identities=13% Similarity=0.222 Sum_probs=61.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.++ +|+|+|+++.+++.+++++. ..++.++.+|+.++++++-.+|.|
T Consensus 38 l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~------~~~v~~i~~D~~~~~~~~~~~~~v 109 (272)
T PRK00274 38 AGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA------EDNLTIIEGDALKVDLSELQPLKV 109 (272)
T ss_pred cCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc------cCceEEEEChhhcCCHHHcCcceE
Confidence 4455778999999999999999999976 99999999999999988653 358999999998887653224777
Q ss_pred Eec
Q 020307 237 HAG 239 (328)
Q Consensus 237 ~~~ 239 (328)
+++
T Consensus 110 v~N 112 (272)
T PRK00274 110 VAN 112 (272)
T ss_pred EEe
Confidence 765
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.5e-08 Score=86.30 Aligned_cols=108 Identities=13% Similarity=0.133 Sum_probs=85.9
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CC-C-----
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-F----- 228 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-~----- 228 (328)
+...+.++|||||+++|+.+..++.. .++.+++.+|.+++..+.|++.++..|+ ..++.++.+|+.+ ++ +
T Consensus 75 ~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~--~~~I~~~~G~a~e~L~~l~~~~~ 152 (247)
T PLN02589 75 LKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV--AHKIDFREGPALPVLDQMIEDGK 152 (247)
T ss_pred HHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCceEEEeccHHHHHHHHHhccc
Confidence 34456789999999999999999876 3467999999999999999999999886 6899999999844 22 1
Q ss_pred CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 229 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
..++||+|+...-= .+....+..+.++|+|||++++-.
T Consensus 153 ~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 153 YHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred cCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcC
Confidence 13689999976531 123467888899999999988744
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1e-07 Score=82.31 Aligned_cols=109 Identities=15% Similarity=0.176 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCC-----CCCCCCCccce
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-----RLPFASGFVDA 235 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~-----~lp~~~~~fD~ 235 (328)
++..|||+|||+|..+..+....+..+++++|.|+.++..|.++.....+ ..++.++..+++ ..+..++++|+
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l--~g~i~v~~~~me~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL--SGRIEVIHNIMESDASDEHPLLEGKIDL 225 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh--cCceEEEecccccccccccccccCceeE
Confidence 45589999999999999999988888999999999999999999888765 556666644332 23455789999
Q ss_pred EEecccc-cc-----C-------CC-------------hHHHHHHHHhcccCCcEEEEEEec
Q 020307 236 VHAGAAL-HC-----W-------PS-------------PSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 236 i~~~~vl-~h-----~-------~d-------------~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++++--. .+ + .+ ...++.-+.|.|+|||.+.+....
T Consensus 226 lvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 226 LVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred EecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 9987211 00 0 00 123567788999999999987753
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-07 Score=83.38 Aligned_cols=106 Identities=11% Similarity=0.156 Sum_probs=85.0
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcC-CCCCeEEEEecCCCC-CCCCCccceEEec
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-LTSNLALVRADVCRL-PFASGFVDAVHAG 239 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~~~i~~~~~d~~~l-p~~~~~fD~i~~~ 239 (328)
.++||-||.|.|..++.+.+..+..+++.+|++++.++.+++.+...... ..+++.++..|..+. .-...+||+|++.
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 36999999999999999999987789999999999999999998764311 147899999997543 2123489999986
Q ss_pred cccccCCCh------HHHHHHHHhcccCCcEEEEEE
Q 020307 240 AALHCWPSP------SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 240 ~vl~h~~d~------~~~l~~~~r~LkpgG~l~i~~ 269 (328)
..=. . .| ..+++.+.+.|+++|+++...
T Consensus 157 ~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 157 STDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 5411 1 22 688999999999999999974
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=5e-08 Score=87.83 Aligned_cols=77 Identities=16% Similarity=0.303 Sum_probs=64.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.+. +++++|+++.+++.+++++...+. ..++.++.+|+.+.++ ..||.|
T Consensus 32 ~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~--~~~v~ii~~Dal~~~~--~~~d~V 105 (294)
T PTZ00338 32 AAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPL--ASKLEVIEGDALKTEF--PYFDVC 105 (294)
T ss_pred cCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCC--CCcEEEEECCHhhhcc--cccCEE
Confidence 4455778999999999999999999865 899999999999999998876432 4689999999987664 368988
Q ss_pred Eec
Q 020307 237 HAG 239 (328)
Q Consensus 237 ~~~ 239 (328)
+++
T Consensus 106 vaN 108 (294)
T PTZ00338 106 VAN 108 (294)
T ss_pred Eec
Confidence 875
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-07 Score=83.56 Aligned_cols=74 Identities=12% Similarity=0.263 Sum_probs=61.1
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccc--
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD-- 234 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD-- 234 (328)
+...++.+|||+|||+|.++..+++.++ .++++|+++.+++.++.++.. ..++.++.+|+..++++ .+|
T Consensus 25 ~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~~~~~--~~d~~ 95 (253)
T TIGR00755 25 ANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALKVDLP--DFPKQ 95 (253)
T ss_pred cCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhcCChh--HcCCc
Confidence 4455678999999999999999999986 799999999999999887643 45899999999888764 466
Q ss_pred -eEEec
Q 020307 235 -AVHAG 239 (328)
Q Consensus 235 -~i~~~ 239 (328)
+|+++
T Consensus 96 ~~vvsN 101 (253)
T TIGR00755 96 LKVVSN 101 (253)
T ss_pred ceEEEc
Confidence 55543
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.9e-06 Score=70.23 Aligned_cols=130 Identities=18% Similarity=0.262 Sum_probs=95.6
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+.......+||||||+|..+..|++. +++..+.++|+++.+++..++-+..+ ..++..++.|+..- +..++.|+
T Consensus 39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n----~~~~~~V~tdl~~~-l~~~~VDv 113 (209)
T KOG3191|consen 39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN----RVHIDVVRTDLLSG-LRNESVDV 113 (209)
T ss_pred HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc----CCccceeehhHHhh-hccCCccE
Confidence 33344678999999999999999886 67778999999999999887776654 45688899998542 34589999
Q ss_pred EEecccc-----ccCC------------C----hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCC
Q 020307 236 VHAGAAL-----HCWP------------S----PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNY 294 (328)
Q Consensus 236 i~~~~vl-----~h~~------------d----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (328)
++.+--. +.+. + ..+++..+-.+|.|.|++++.....+
T Consensus 114 LvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N--------------------- 172 (209)
T KOG3191|consen 114 LVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN--------------------- 172 (209)
T ss_pred EEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc---------------------
Confidence 9987321 1110 0 13567777788899999999774332
Q ss_pred CCHHHHHHHHHHCCCeEEE
Q 020307 295 LTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 295 ~~~~~l~~ll~~~Gf~~v~ 313 (328)
.++++-++++.-||....
T Consensus 173 -~p~ei~k~l~~~g~~~~~ 190 (209)
T KOG3191|consen 173 -KPKEILKILEKKGYGVRI 190 (209)
T ss_pred -CHHHHHHHHhhcccceeE
Confidence 356777899999996544
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7e-08 Score=80.19 Aligned_cols=106 Identities=25% Similarity=0.306 Sum_probs=83.5
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHh--CCCceEEEEeCCHHHHHHHHHHHHhcCc-------CCCCCeEEEEecCCCCCCC
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNT-------ILTSNLALVRADVCRLPFA 229 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~g~D~s~~~~~~a~~~~~~~~~-------~~~~~i~~~~~d~~~lp~~ 229 (328)
..|+.+.||+|.|+|+++..++.. .++..++|+|.-++.++.+++++...-. ....++.++.+|-...-.+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 568999999999999999888854 2333569999999999999998875321 1245788999998776667
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
..+||.|.+... ..+..+++...|+|||++++..-
T Consensus 160 ~a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 160 QAPYDAIHVGAA------ASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred cCCcceEEEccC------ccccHHHHHHhhccCCeEEEeec
Confidence 889999998753 34556788889999999998653
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-07 Score=86.68 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=81.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC-cCCCCCeEEEEecCCCC-CCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL-PFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~l-p~~~~~fD~i~ 237 (328)
...++||.||+|.|..++.+.+..+..+++.+|+++++++.|++.+...+ ....+++.++.+|.... ....++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 34679999999999999999887655689999999999999999875321 11157899999998542 33457899999
Q ss_pred eccccccCC-C------hHHHHH-HHHhcccCCcEEEEEE
Q 020307 238 AGAALHCWP-S------PSNAVA-EISRILRSGGVFVGTT 269 (328)
Q Consensus 238 ~~~vl~h~~-d------~~~~l~-~~~r~LkpgG~l~i~~ 269 (328)
+... .... . ...+++ .+.+.|+|||++++..
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 8632 1110 1 135677 8999999999987753
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-06 Score=75.91 Aligned_cols=130 Identities=19% Similarity=0.324 Sum_probs=103.1
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC--CCCc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--ASGF 232 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--~~~~ 232 (328)
.+...||.+|+|-|.|+|.++.++++. +|..+++-+|+.+...+.|++.++++++ ..++++..-|+....| .+..
T Consensus 100 ~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi--~~~vt~~hrDVc~~GF~~ks~~ 177 (314)
T KOG2915|consen 100 MLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI--GDNVTVTHRDVCGSGFLIKSLK 177 (314)
T ss_pred HhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC--CcceEEEEeecccCCccccccc
Confidence 477789999999999999999999987 6778999999999999999999999986 8899999999977554 3577
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCc-EEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGG-VFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG-~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
+|+|++ -+|.|..++-.+...||.+| ++....|. .+... .--++|+.+||..
T Consensus 178 aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~csFSPC---------IEQvq-------------rtce~l~~~gf~~ 230 (314)
T KOG2915|consen 178 ADAVFL-----DLPAPWEAIPHAAKILKDEGGRLCSFSPC---------IEQVQ-------------RTCEALRSLGFIE 230 (314)
T ss_pred cceEEE-----cCCChhhhhhhhHHHhhhcCceEEeccHH---------HHHHH-------------HHHHHHHhCCCce
Confidence 888886 45889889999999999877 55444332 11111 2336678889876
Q ss_pred EEE
Q 020307 312 YTS 314 (328)
Q Consensus 312 v~~ 314 (328)
++.
T Consensus 231 i~~ 233 (314)
T KOG2915|consen 231 IET 233 (314)
T ss_pred EEE
Confidence 654
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.2e-07 Score=72.91 Aligned_cols=109 Identities=17% Similarity=0.340 Sum_probs=90.4
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA 229 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~ 229 (328)
.+....+..|||+|.|+|-++..+.+++ ....++.+|.|++.+....+. .+.+.++.+|+.++. +.
T Consensus 43 ~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~--------~p~~~ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 43 VIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL--------YPGVNIINGDAFDLRTTLGEHK 114 (194)
T ss_pred ccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh--------CCCccccccchhhHHHHHhhcC
Confidence 3455678899999999999999999885 456799999999999998886 567779999987764 45
Q ss_pred CCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEecc
Q 020307 230 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
...||.|++.--+-.++-. .++|+++...|.+||.++..++..
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 6789999998777766533 478999999999999999988763
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2e-07 Score=86.99 Aligned_cols=101 Identities=17% Similarity=0.208 Sum_probs=81.6
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccc
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 241 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~v 241 (328)
+.+|||++||+|.++..++.......|+++|+++.+++.++++++.++ ..++.+..+|+..+....+.||+|++.-
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~---~~~~~v~~~Da~~~l~~~~~fD~V~lDP- 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG---LENEKVFNKDANALLHEERKFDVVDIDP- 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCceEEEhhhHHHHHhhcCCCCEEEECC-
Confidence 468999999999999999876544589999999999999999998766 4467789999865422145799999843
Q ss_pred cccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 242 LHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 242 l~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
...+..++..+.+.+++||+++++.
T Consensus 134 ---~Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 ---FGSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred ---CCCcHHHHHHHHHHhcCCCEEEEEe
Confidence 2456788888888899999999983
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.4e-08 Score=85.72 Aligned_cols=159 Identities=18% Similarity=0.214 Sum_probs=96.5
Q ss_pred cCCCeEEEEcCCcCHHHHH-HHHhCCCceEEEEeCCHHHHHHHHHHHHhcCc-------------CC------------C
Q 020307 160 AQGGLLVDVSCGSGLFSRK-FAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-------------IL------------T 213 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~-l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-------------~~------------~ 213 (328)
.++.++||||||.--+-.. +.+.. .+++..|.++..++..++-++..+. .. .
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f--~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWF--EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTE--EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhh--cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 3577999999998543222 22223 3899999999998877655543211 00 0
Q ss_pred CCe-EEEEecCCCCC-CCC-----CccceEEeccccccCC-ChH---HHHHHHHhcccCCcEEEEEEeccCCCCcchhhH
Q 020307 214 SNL-ALVRADVCRLP-FAS-----GFVDAVHAGAALHCWP-SPS---NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR 282 (328)
Q Consensus 214 ~~i-~~~~~d~~~lp-~~~-----~~fD~i~~~~vl~h~~-d~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~ 282 (328)
..| .++.+|..+.+ +.. .+||+|++.++|+... |.. .+++++.++|||||.|++.......... .+
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~--vG- 209 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYM--VG- 209 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEE--ET-
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEE--EC-
Confidence 112 36678886543 332 2599999999998874 553 7899999999999999998865432110 00
Q ss_pred HHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE------eCcEEEEEEeC
Q 020307 283 VLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV------QQSFIMFAAQK 327 (328)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~------~~~~~~~~a~k 327 (328)
...-+....+++.+++.|+++||.+.+... .....+++|||
T Consensus 210 ----~~~F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 210 ----GHKFPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp ----TEEEE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred ----CEecccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 111234467899999999999998887542 12236667765
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.62 E-value=3e-07 Score=76.91 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=82.5
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccc
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 243 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~ 243 (328)
+++|||+|.|.=+.-++-..|+.+++.+|.+..-+...+......+ ..|+.++.+.+++ +....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~---L~nv~v~~~R~E~-~~~~~~fd~v~aRAv-- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG---LSNVEVINGRAEE-PEYRESFDVVTARAV-- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH-TTTTT-EEEEEEESS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC---CCCEEEEEeeecc-cccCCCccEEEeehh--
Confidence 8999999999999888888888899999999998888888877776 5689999999988 445789999999886
Q ss_pred cCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 244 CWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 244 h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.....++.-+...+++||+++..-
T Consensus 125 --~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 --APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 456788899999999999998865
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.9e-07 Score=71.01 Aligned_cols=96 Identities=13% Similarity=0.176 Sum_probs=69.8
Q ss_pred cCCCeEEEEcCCcCH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC-CCccceEE
Q 020307 160 AQGGLLVDVSCGSGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~i~ 237 (328)
.++.+|||||||+|. ++..|++.|. +|+++|+++..++.++++ .+.++.+|+.+..+. -+.+|+|.
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~----------~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKL----------GLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHh----------CCeEEECcCCCCCHHHHhcCCEEE
Confidence 356789999999996 8888998876 999999999999888763 568899999876533 35689998
Q ss_pred eccccccCCChHHHHHHHHhcccC-CcEEEEEEeccC
Q 020307 238 AGAALHCWPSPSNAVAEISRILRS-GGVFVGTTFLRY 273 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~Lkp-gG~l~i~~~~~~ 273 (328)
+..- |..+..-+.++-+. |.-+++......
T Consensus 83 sirp------p~el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 83 SIRP------PRDLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred EeCC------CHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 7553 44444445555443 455666665443
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.2e-07 Score=76.13 Aligned_cols=106 Identities=16% Similarity=0.137 Sum_probs=76.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C-C-CCC-ccceE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-F-ASG-FVDAV 236 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~-~~~-~fD~i 236 (328)
.+.++||++||+|.++..++.++. ..|+++|.++.+++.++++++..+. ..++.++.+|+... . + ... .||+|
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~--~~~~~~~~~D~~~~l~~~~~~~~~~dvv 125 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKS--GEQAEVVRNSALRALKFLAKKPTFDNVI 125 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCC--cccEEEEehhHHHHHHHhhccCCCceEE
Confidence 578999999999999999999974 4799999999999999999887653 34688999998432 2 1 122 47887
Q ss_pred EeccccccCCChHHHHHHHH--hcccCCcEEEEEEe
Q 020307 237 HAGAALHCWPSPSNAVAEIS--RILRSGGVFVGTTF 270 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~--r~LkpgG~l~i~~~ 270 (328)
+..=-.. -......+..+. .+|+++|.+++...
T Consensus 126 ~~DPPy~-~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 126 YLDPPFF-NGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred EECcCCC-CCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 7643221 112234455443 36888888777654
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-06 Score=81.37 Aligned_cols=124 Identities=15% Similarity=0.164 Sum_probs=84.1
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C-CC-----------
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-FA----------- 229 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~~----------- 229 (328)
.+|||++||+|.++..+++... +|+|+|+++.+++.+++++...+ ..++.++.+|+.+. + +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~---~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~ 282 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANG---IDNVQIIRMSAEEFTQAMNGVREFNRLKGI 282 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhC---CCcEEEEECCHHHHHHHHhhcccccccccc
Confidence 5799999999999999988765 89999999999999999988766 45899999998652 1 10
Q ss_pred ---CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHH
Q 020307 230 ---SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS 306 (328)
Q Consensus 230 ---~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 306 (328)
...||+|++.=- .-.-...+++.+. +|+++++++..-. . -..++..+. +
T Consensus 283 ~~~~~~~D~v~lDPP--R~G~~~~~l~~l~---~~~~ivyvSC~p~----------t------------larDl~~L~-~ 334 (362)
T PRK05031 283 DLKSYNFSTIFVDPP--RAGLDDETLKLVQ---AYERILYISCNPE----------T------------LCENLETLS-Q 334 (362)
T ss_pred cccCCCCCEEEECCC--CCCCcHHHHHHHH---ccCCEEEEEeCHH----------H------------HHHHHHHHc-C
Confidence 125899997321 0000134444444 3778877766210 0 023566554 3
Q ss_pred CCCeEEEEEEeCcE
Q 020307 307 CGLTNYTSKVQQSF 320 (328)
Q Consensus 307 ~Gf~~v~~~~~~~~ 320 (328)
||++.+....+-|
T Consensus 335 -gY~l~~v~~~DmF 347 (362)
T PRK05031 335 -THKVERFALFDQF 347 (362)
T ss_pred -CcEEEEEEEcccC
Confidence 8988876554444
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2e-08 Score=83.05 Aligned_cols=136 Identities=18% Similarity=0.152 Sum_probs=91.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
.+.++||+|.|.|..+..++.... +|++.|.|..|....+++ ..++--. .+-.+ .+-+||+|.|.+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk--------~ynVl~~-~ew~~---t~~k~dli~clN 177 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK--------NYNVLTE-IEWLQ---TDVKLDLILCLN 177 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc--------CCceeee-hhhhh---cCceeehHHHHH
Confidence 347999999999999999988765 899999999998877653 2222111 11111 234699999999
Q ss_pred ccccCCChHHHHHHHHhcccC-CcEEEEEEeccCCCCcch-----hhHH--HHHhhhccCCCCC--HHHHHHHHHHCCCe
Q 020307 241 ALHCWPSPSNAVAEISRILRS-GGVFVGTTFLRYTSSTSL-----TGRV--LRERILQNYNYLT--EEEIEDLCTSCGLT 310 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~Lkp-gG~l~i~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~--~~~l~~ll~~~Gf~ 310 (328)
+|..--+|-++|+.+..+|+| +|++++.-..+....... ..++ +.... -+.|. ...+.++++.+||.
T Consensus 178 lLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~---Gr~~ee~v~~~~e~lr~~g~~ 254 (288)
T KOG3987|consen 178 LLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENN---GRSFEEEVARFMELLRNCGYR 254 (288)
T ss_pred HHHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhc---CccHHHHHHHHHHHHHhcCch
Confidence 999889999999999999999 898877554433211110 0111 11111 01111 23578899999997
Q ss_pred EEE
Q 020307 311 NYT 313 (328)
Q Consensus 311 ~v~ 313 (328)
+..
T Consensus 255 vea 257 (288)
T KOG3987|consen 255 VEA 257 (288)
T ss_pred hhh
Confidence 654
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-06 Score=80.29 Aligned_cols=97 Identities=15% Similarity=0.198 Sum_probs=70.0
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC----------C--
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA----------S-- 230 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~----------~-- 230 (328)
.+|||++||+|.++..+++... +|+|+|+++.+++.|++++...+ ..++.++.+|+.++--. .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 273 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANN---IDNVQIIRMSAEEFTQAMNGVREFRRLKGI 273 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcC---CCcEEEEEcCHHHHHHHHhhcccccccccc
Confidence 4799999999999999998864 89999999999999999998776 45799999998653110 1
Q ss_pred ----CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 231 ----GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 231 ----~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
..||+|++.=- .-.-...+++.+. +|+++++++.
T Consensus 274 ~~~~~~~d~v~lDPP--R~G~~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 274 DLKSYNCSTIFVDPP--RAGLDPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred ccccCCCCEEEECCC--CCCCcHHHHHHHH---cCCcEEEEEc
Confidence 13798886211 0000124445444 4788888866
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.1e-07 Score=77.78 Aligned_cols=100 Identities=21% Similarity=0.328 Sum_probs=75.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+-||-|.|+..+++.+....|+++|+++..++.++++++.+++ ...+..+.+|...+.. .+.+|-|++.
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv--~~~i~~~~~D~~~~~~-~~~~drvim~ 176 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV--ENRIEVINGDAREFLP-EGKFDRVIMN 176 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT---TTTEEEEES-GGG----TT-EEEEEE-
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC--CCeEEEEcCCHHHhcC-ccccCEEEEC
Confidence 468899999999999999999965566899999999999999999998876 5678999999987754 7889999875
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFV 266 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~ 266 (328)
.- +.-..+|..+.+++|+||++-
T Consensus 177 lp----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 177 LP----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred Ch----HHHHHHHHHHHHHhcCCcEEE
Confidence 42 233467899999999998763
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.4e-07 Score=78.47 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=79.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC-cCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+..+..++||-||.|.|..++.+.+.-. +|+-+|+++++++.+++.+.... ....+++.++.. +.+ ...++||+
T Consensus 68 ~~h~~pk~VLIiGGGDGg~~REvLkh~~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDV 142 (262)
T PRK00536 68 CTKKELKEVLIVDGFDLELAHQLFKYDT--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDL 142 (262)
T ss_pred hhCCCCCeEEEEcCCchHHHHHHHCcCC--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCE
Confidence 3445678999999999999999999843 99999999999999999665411 112677887762 221 12368999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
|+.... .+..+.+.+.+.|+|||+++...
T Consensus 143 IIvDs~-----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 143 IICLQE-----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EEEcCC-----CChHHHHHHHHhcCCCcEEEECC
Confidence 998743 45677899999999999999865
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-06 Score=69.62 Aligned_cols=103 Identities=29% Similarity=0.451 Sum_probs=76.3
Q ss_pred EEEEcCCcCHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHhcCcCCCCC-eEEEEecCCC--CCCCC-CccceEEec
Q 020307 165 LVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSN-LALVRADVCR--LPFAS-GFVDAVHAG 239 (328)
Q Consensus 165 vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~-i~~~~~d~~~--lp~~~-~~fD~i~~~ 239 (328)
++|+|||+|... .+...... ..++|+|+++.++..++..... . ... +.+...|... +++.. ..||++ ..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A---GLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c---CCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 999999999976 34443322 3789999999999885554322 1 112 6788888776 77776 489999 55
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
....|..++...+.++.+.++|+|.+++......
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 126 LLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 5554444488999999999999999999887654
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.53 E-value=1e-06 Score=77.12 Aligned_cols=144 Identities=21% Similarity=0.198 Sum_probs=87.1
Q ss_pred CCCeEEEEcCCcC--HHHHHHHH-hCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCC--eEEEEecCCCCC--CC----
Q 020307 161 QGGLLVDVSCGSG--LFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN--LALVRADVCRLP--FA---- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G--~~~~~l~~-~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~--i~~~~~d~~~lp--~~---- 229 (328)
.-...||||||-= .+..+.++ ..|..+|+-+|.++-.+..++..+.. .++ ..++.+|+.+.. +.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~-----~~~g~t~~v~aD~r~p~~iL~~p~~ 142 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD-----NPRGRTAYVQADLRDPEAILAHPEV 142 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT------TTSEEEEEE--TT-HHHHHCSHHH
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC-----CCCccEEEEeCCCCCHHHHhcCHHH
Confidence 3468999999942 24444444 47888999999999999999988876 445 889999987632 11
Q ss_pred CCccc-----eEEeccccccCCC---hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhH---HHHHhhhccCCCCCHH
Q 020307 230 SGFVD-----AVHAGAALHCWPS---PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR---VLRERILQNYNYLTEE 298 (328)
Q Consensus 230 ~~~fD-----~i~~~~vl~h~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 298 (328)
.+-+| .+++..+|||++| |..+++.+...|.||.+|+++...... .+...+ .+...........|.+
T Consensus 143 ~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~--~p~~~~~~~~~~~~~~~~~~~Rs~~ 220 (267)
T PF04672_consen 143 RGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDG--APERAEALEAVYAQAGSPGRPRSRE 220 (267)
T ss_dssp HCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TT--SHHHHHHHHHHHHHCCS----B-HH
T ss_pred HhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCC--CHHHHHHHHHHHHcCCCCceecCHH
Confidence 12233 6778899999964 789999999999999999999987642 222112 2222334566778899
Q ss_pred HHHHHHHHCCCeEEE
Q 020307 299 EIEDLCTSCGLTNYT 313 (328)
Q Consensus 299 ~l~~ll~~~Gf~~v~ 313 (328)
++.++|. ||+.++
T Consensus 221 ei~~~f~--g~elve 233 (267)
T PF04672_consen 221 EIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHCCT--TSEE-T
T ss_pred HHHHHcC--CCccCC
Confidence 9999988 888765
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-06 Score=83.56 Aligned_cols=113 Identities=18% Similarity=0.172 Sum_probs=87.5
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCccce
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDA 235 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~ 235 (328)
...++.+|||+++|.|.=+.+++... ....+++.|+++..++..+++++..| ..++.+...|...++ ...+.||.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G---~~nv~v~~~D~~~~~~~~~~~fD~ 186 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG---VSNVALTHFDGRVFGAALPETFDA 186 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCchhhhhhhchhhcCe
Confidence 45688999999999999888888863 34589999999999999999999877 567888888887653 22457999
Q ss_pred EEe----c--cccccCCCh----------------HHHHHHHHhcccCCcEEEEEEeccC
Q 020307 236 VHA----G--AALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 236 i~~----~--~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
|++ + +++..-++. ..+|..+.+.|||||+|+.+|-...
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 994 3 223322211 3678999999999999999886544
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.6e-07 Score=77.00 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=78.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeE-EEEecCCCCC-----CCCCcc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA-LVRADVCRLP-----FASGFV 233 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~-~~~~d~~~lp-----~~~~~f 233 (328)
.++.++||+|||+|.++..+++.+ ..+|+|+|++++++....+ . .+++. +...++..+. ..-..+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~---~-----~~~v~~~~~~ni~~~~~~~~~~d~~~~ 144 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLR---Q-----DERVKVLERTNIRYVTPADIFPDFATF 144 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHh---c-----CCCeeEeecCCcccCCHhHcCCCceee
Confidence 367799999999999999999985 3589999999988765222 1 33332 3333443222 122356
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE-eccCCCCcchhhHHHHHh---h-hccCCCCCHHHHHHHHHHCC
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT-FLRYTSSTSLTGRVLRER---I-LQNYNYLTEEEIEDLCTSCG 308 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~-~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~ll~~~G 308 (328)
|+++.+.. ..+..+.+.|+| |.+++.. |... . ++..... . ....+..-.+++...+.+.|
T Consensus 145 DvsfiS~~--------~~l~~i~~~l~~-~~~~~L~KPqFE-----~-~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~ 209 (228)
T TIGR00478 145 DVSFISLI--------SILPELDLLLNP-NDLTLLFKPQFE-----A-GREKKNKKGVVRDKEAIALALHKVIDKGESPD 209 (228)
T ss_pred eEEEeehH--------hHHHHHHHHhCc-CeEEEEcChHhh-----h-cHhhcCcCCeecCHHHHHHHHHHHHHHHHcCC
Confidence 76665543 248889999999 7665543 2211 0 1100000 0 01112223456777888899
Q ss_pred CeEEEE
Q 020307 309 LTNYTS 314 (328)
Q Consensus 309 f~~v~~ 314 (328)
|++...
T Consensus 210 ~~~~~~ 215 (228)
T TIGR00478 210 FQEKKI 215 (228)
T ss_pred CeEeeE
Confidence 987764
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.8e-07 Score=78.94 Aligned_cols=105 Identities=18% Similarity=0.258 Sum_probs=79.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
-.++.|||+|||+|.++...+..| -.+|+++|.| +|.+.|++.++.+++ ..+|.++.+-++++.++ ++.|+|++-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS-~MAqyA~~Lv~~N~~--~~rItVI~GKiEdieLP-Ek~DviISE 250 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEAS-EMAQYARKLVASNNL--ADRITVIPGKIEDIELP-EKVDVIISE 250 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC-cceEEEEehh-HHHHHHHHHHhcCCc--cceEEEccCccccccCc-hhccEEEec
Confidence 357899999999999999999987 4589999975 589999999888776 78999999999988775 479999974
Q ss_pred cccccCCCh--HHHHHHHHhcccCCcEEEEEE
Q 020307 240 AALHCWPSP--SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 240 ~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~ 269 (328)
-.=.-+-+. ....-..++.|||.|..+=+.
T Consensus 251 PMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 251 PMGYMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred cchhhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 221111111 122334569999999876443
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.4e-06 Score=70.61 Aligned_cols=120 Identities=14% Similarity=0.105 Sum_probs=86.6
Q ss_pred EEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC-CCCCCCCCc-cceEEecccc
Q 020307 165 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGF-VDAVHAGAAL 242 (328)
Q Consensus 165 vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~-fD~i~~~~vl 242 (328)
|.||||-.|++...|.+.+.-..++++|+++..++.|++.+...++ ..++.+..+|- ..++ .+. .|.|+..++=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l--~~~i~~rlgdGL~~l~--~~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL--EDRIEVRLGDGLEVLK--PGEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG----GGG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--cccEEEEECCcccccC--CCCCCCEEEEecCC
Confidence 6899999999999999998777899999999999999999999886 67899999994 4443 333 7888876652
Q ss_pred ccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 243 HCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 243 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
-. -...+|.+....++....|++.... ....++++|.+.||.+++.
T Consensus 77 G~--lI~~ILe~~~~~~~~~~~lILqP~~------------------------~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 77 GE--LIIEILEAGPEKLSSAKRLILQPNT------------------------HAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp HH--HHHHHHHHTGGGGTT--EEEEEESS-------------------------HHHHHHHHHHTTEEEEEE
T ss_pred HH--HHHHHHHhhHHHhccCCeEEEeCCC------------------------ChHHHHHHHHHCCCEEEEe
Confidence 11 1245666666667666667765532 3468999999999998875
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.8e-08 Score=76.28 Aligned_cols=59 Identities=25% Similarity=0.205 Sum_probs=49.1
Q ss_pred CeEEEEecCCCCCCCCCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccC
Q 020307 215 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 215 ~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
.+++++-.....+|.+++.|+|.+.+|+||+.-. ..++++.+|.|||||+|-+..|...
T Consensus 30 ~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 30 EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 4555554456678999999999999999999744 4789999999999999999998764
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.1e-07 Score=78.09 Aligned_cols=112 Identities=12% Similarity=0.138 Sum_probs=82.1
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCc-CCCCCeEEEEecCCCC-CCCCC-ccce
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-PFASG-FVDA 235 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~~~~~i~~~~~d~~~l-p~~~~-~fD~ 235 (328)
.++.++||-||.|.|..++.+.+..+..+++.+|+++.+++.|++.+..... ...+++.++.+|.... .-..+ +||+
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 3467899999999999999999886567999999999999999998764211 1257999999997442 11233 8999
Q ss_pred EEeccccccCCCh----HHHHHHHHhcccCCcEEEEEEe
Q 020307 236 VHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 236 i~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
|+....-...+.+ ..+++.+.+.|+|||++++...
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 9975432222222 5789999999999999999773
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.3e-07 Score=71.72 Aligned_cols=77 Identities=21% Similarity=0.382 Sum_probs=64.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
-.|+.++|+|||.|-+.....-.. ...|+|+|+++++++.+.+++.+. ..+++++++|+..+.+..+.||.++.+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~-~e~vlGfDIdpeALEIf~rNaeEf----EvqidlLqcdildle~~~g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPK-NESVLGFDIDPEALEIFTRNAEEF----EVQIDLLQCDILDLELKGGIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCC-CceEEeeecCHHHHHHHhhchHHh----hhhhheeeeeccchhccCCeEeeEEec
Confidence 468899999999999885555443 457999999999999999998876 347799999999888888999999986
Q ss_pred cc
Q 020307 240 AA 241 (328)
Q Consensus 240 ~v 241 (328)
--
T Consensus 122 pp 123 (185)
T KOG3420|consen 122 PP 123 (185)
T ss_pred CC
Confidence 44
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-06 Score=79.80 Aligned_cols=111 Identities=19% Similarity=0.199 Sum_probs=86.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC----CCCCCccce
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVDA 235 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD~ 235 (328)
..|++|||+=|=||.++.+++..|. .+|++||.|...++.|+++++.+++. ..++.|+++|+.+. .-...+||+
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~~-~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGLD-GDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCCC-ccceeeehhhHHHHHHHHHhcCCcccE
Confidence 3589999999999999999998763 48999999999999999999988752 45689999998543 123458999
Q ss_pred EEecc---------ccccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 236 VHAGA---------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 236 i~~~~---------vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
|++.= ...-..+-..++..+.++|+|||.+++++...
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99731 00111123467889999999999999988543
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.37 E-value=5e-06 Score=75.50 Aligned_cols=107 Identities=15% Similarity=0.112 Sum_probs=76.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHh----CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEE--EEecCCC----CCC-
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL--VRADVCR----LPF- 228 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~--~~~d~~~----lp~- 228 (328)
.++..|+|+|||+|.=+..|.+. +....++++|+|.++++.+.+++.... .+.+.+ +++|+.+ ++-
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~---~p~l~v~~l~gdy~~~l~~l~~~ 151 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN---FSHVRCAGLLGTYDDGLAWLKRP 151 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc---CCCeEEEEEEecHHHHHhhcccc
Confidence 35668999999999865554443 334579999999999999999988322 455555 7888754 221
Q ss_pred -CCCccceEEec-cccccCCChH--HHHHHHHh-cccCCcEEEEEE
Q 020307 229 -ASGFVDAVHAG-AALHCWPSPS--NAVAEISR-ILRSGGVFVGTT 269 (328)
Q Consensus 229 -~~~~fD~i~~~-~vl~h~~d~~--~~l~~~~r-~LkpgG~l~i~~ 269 (328)
......+++.. .+|.+++..+ .+|+++.+ .|+|||.+++..
T Consensus 152 ~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 152 ENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 12335666655 4788886554 78999999 999999887744
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.6e-06 Score=76.17 Aligned_cols=107 Identities=20% Similarity=0.118 Sum_probs=70.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC-CCCCCCCCccceEEe
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDAVHA 238 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~i~~ 238 (328)
...+|||+|+|.|..+..+.+..+ ..+++.+|.|+.+++.++..+..... .....+..... ...++. ..|+|++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~--~~DLvi~ 108 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN--NRNAEWRRVLYRDFLPFP--PDDLVIA 108 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc--cccchhhhhhhcccccCC--CCcEEEE
Confidence 456999999999998877776533 34799999999999999987664321 11111111111 112222 3399999
Q ss_pred ccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccC
Q 020307 239 GAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 239 ~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
.++|..+++. ..+++.+.+.+.+ .|+++++...
T Consensus 109 s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 109 SYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred ehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 9999999872 2445555554544 8999998654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.9e-05 Score=65.07 Aligned_cols=147 Identities=17% Similarity=0.242 Sum_probs=95.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~ 232 (328)
+...++.+||-+|.++|....++++. ++.+.|+++|+|+...+..-...+. .+|+--+..|+.... .--+.
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-----R~NIiPIl~DAr~P~~Y~~lv~~ 143 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-----RPNIIPILEDARHPEKYRMLVEM 143 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-----STTEEEEES-TTSGGGGTTTS--
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-----CCceeeeeccCCChHHhhccccc
Confidence 45678999999999999999999987 6678999999999766555544444 679999999996532 11247
Q ss_pred cceEEeccccccCCCh-HHHHHHHHhcccCCcEEEEEEeccC--CCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCC
Q 020307 233 VDAVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTTFLRY--TSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL 309 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~-~~~l~~~~r~LkpgG~l~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf 309 (328)
+|+|++.-. -++. .-++.++...||+||.++++--... ....+ ...+ .+-.+.|++.||
T Consensus 144 VDvI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p--~~vf-------------~~e~~~L~~~~~ 205 (229)
T PF01269_consen 144 VDVIFQDVA---QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADP--EEVF-------------AEEVKKLKEEGF 205 (229)
T ss_dssp EEEEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSH--HHHH-------------HHHHHHHHCTTC
T ss_pred ccEEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCH--HHHH-------------HHHHHHHHHcCC
Confidence 899987543 1233 3457777789999999998764321 10011 0111 123456788999
Q ss_pred eEEEEEEeCcE----EEEEEe
Q 020307 310 TNYTSKVQQSF----IMFAAQ 326 (328)
Q Consensus 310 ~~v~~~~~~~~----~~~~a~ 326 (328)
++.+...-.+| .+++++
T Consensus 206 ~~~e~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 206 KPLEQITLEPYERDHAMVVGR 226 (229)
T ss_dssp EEEEEEE-TTTSTTEEEEEEE
T ss_pred ChheEeccCCCCCCcEEEEEE
Confidence 99998776666 555554
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-06 Score=74.98 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=64.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCC-ccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG-FVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~-~fD~ 235 (328)
....++..|||||+|.|.++..|.+.+. .|+++|+++.+++..+++... ..++.++.+|+...++++- .++.
T Consensus 26 a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk~d~~~l~~~~~ 98 (259)
T COG0030 26 ANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALKFDFPSLAQPYK 98 (259)
T ss_pred cCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhcCcchhhcCCCE
Confidence 4455688999999999999999999987 899999999999999998763 5789999999988887643 5677
Q ss_pred EEec
Q 020307 236 VHAG 239 (328)
Q Consensus 236 i~~~ 239 (328)
|+++
T Consensus 99 vVaN 102 (259)
T COG0030 99 VVAN 102 (259)
T ss_pred EEEc
Confidence 7765
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.5e-06 Score=75.21 Aligned_cols=110 Identities=18% Similarity=0.225 Sum_probs=78.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C--CCCCccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P--FASGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p--~~~~~fD~i 236 (328)
.++++|||+=|=+|.++..++..| -.+|+.+|.|..+++.+++++..+++. ..++.++..|+.+. . -..++||+|
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~-~~~~~~~~~Dvf~~l~~~~~~~~fD~I 199 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLD-LDRHRFIQGDVFKFLKRLKKGGRFDLI 199 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-C-CTCEEEEES-HHHHHHHHHHTT-EEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ccceEEEecCHHHHHHHHhcCCCCCEE
Confidence 357899999999999999888766 347999999999999999999987752 36789999998542 1 135689999
Q ss_pred Eecc---c---cccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 237 HAGA---A---LHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 237 ~~~~---v---l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++.= . ..-..+-..+++.+.++|+|||.+++++..
T Consensus 200 IlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 200 ILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp EE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 9841 0 000012346788899999999998877643
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.1e-06 Score=77.20 Aligned_cols=101 Identities=19% Similarity=0.323 Sum_probs=81.4
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC---CC
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SG 231 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~ 231 (328)
+++...++.++||+=||.|.|+..+++... +|+|+|+++++++.|+++++.++ ..|+.|..++++++... ..
T Consensus 287 ~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~---i~N~~f~~~~ae~~~~~~~~~~ 361 (432)
T COG2265 287 EWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANG---IDNVEFIAGDAEEFTPAWWEGY 361 (432)
T ss_pred HHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcC---CCcEEEEeCCHHHHhhhccccC
Confidence 455666788999999999999999998765 99999999999999999999887 56799999999876533 24
Q ss_pred ccceEEeccccccCCCh------HHHHHHHHhcccCCcEEEEEE
Q 020307 232 FVDAVHAGAALHCWPSP------SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~------~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.+|.|+. || ..+++.+.+ ++|..+++++.
T Consensus 362 ~~d~Vvv--------DPPR~G~~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 362 KPDVVVV--------DPPRAGADREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred CCCEEEE--------CCCCCCCCHHHHHHHHh-cCCCcEEEEeC
Confidence 7899996 44 245555554 67777888866
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.6e-06 Score=70.17 Aligned_cols=108 Identities=18% Similarity=0.203 Sum_probs=86.3
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CC-----C
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-----F 228 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-----~ 228 (328)
+++....++.||||.=+|+.+...+...| +++|+++|++++..+.+....+.++. ...++++++++.+ ++ .
T Consensus 68 li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv--~~KI~~i~g~a~esLd~l~~~~ 145 (237)
T KOG1663|consen 68 LIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV--DHKITFIEGPALESLDELLADG 145 (237)
T ss_pred HHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc--cceeeeeecchhhhHHHHHhcC
Confidence 34556788999999999988877777643 57999999999999999988888886 7889999998743 22 3
Q ss_pred CCCccceEEeccccccCCC-hHHHHHHHHhcccCCcEEEEEE
Q 020307 229 ASGFVDAVHAGAALHCWPS-PSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~~d-~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
..++||+++. .|..+ -...+.++.+++|+||++++-.
T Consensus 146 ~~~tfDfaFv----DadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 146 ESGTFDFAFV----DADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred CCCceeEEEE----ccchHHHHHHHHHHHhhcccccEEEEec
Confidence 4689999995 44432 2477899999999999999855
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.1e-06 Score=77.02 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=70.2
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCC-
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASG- 231 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~- 231 (328)
.+...++..+||.+||.|..+..+++..+ ..+|+|+|.++.+++.+++++.. ..++.++.+|+.++. .+++
T Consensus 14 ~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 14 ALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred hhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHHHHHHHcCC
Confidence 35556788999999999999999999864 57999999999999999988654 247999999997654 1222
Q ss_pred -ccceEEecccc--ccCCChHH
Q 020307 232 -FVDAVHAGAAL--HCWPSPSN 250 (328)
Q Consensus 232 -~fD~i~~~~vl--~h~~d~~~ 250 (328)
++|.|++...+ +++.++.+
T Consensus 89 ~~vDgIl~DLGvSs~Qld~~~R 110 (296)
T PRK00050 89 GKVDGILLDLGVSSPQLDDAER 110 (296)
T ss_pred CccCEEEECCCccccccCCCcC
Confidence 79999986543 44555543
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-05 Score=72.09 Aligned_cols=128 Identities=20% Similarity=0.280 Sum_probs=101.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.+|.+|||.=+|.|.|+..+++.+.. .|+++|+++.+++..+++++.+++ ...+..+++|....+...+.+|-|++.
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v--~~~v~~i~gD~rev~~~~~~aDrIim~ 263 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKV--EGRVEPILGDAREVAPELGVADRIIMG 263 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCc--cceeeEEeccHHHhhhccccCCEEEeC
Confidence 35899999999999999999999853 399999999999999999998775 455899999998877555889999986
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCe
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
.. .+...++..+.+.+++||++...+....... .......+.......|.+
T Consensus 264 ~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~----------------~~~~~~~i~~~~~~~~~~ 314 (341)
T COG2520 264 LP----KSAHEFLPLALELLKDGGIIHYYEFVPEDDI----------------EERPEKRIKSAARKGGYK 314 (341)
T ss_pred CC----CcchhhHHHHHHHhhcCcEEEEEeccchhhc----------------ccchHHHHHHHHhhccCc
Confidence 53 4556789999999999999988776554211 112345677777777753
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.4e-05 Score=65.82 Aligned_cols=148 Identities=16% Similarity=0.169 Sum_probs=94.9
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHH----HH--HHHHhcCcCCCCCeEEEEecCCCCC
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQ----CY--DFIKQDNTILTSNLALVRADVCRLP 227 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~----a~--~~~~~~~~~~~~~i~~~~~d~~~lp 227 (328)
.+...+++.+|+|+=.|.|+|++.++.. ++...|+++-+.+...-. .+ ....+.. ..|...+-.++..++
T Consensus 42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~---~aN~e~~~~~~~A~~ 118 (238)
T COG4798 42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV---YANVEVIGKPLVALG 118 (238)
T ss_pred EEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh---hhhhhhhCCcccccC
Confidence 3456788999999999999999999987 666678887665431111 11 1111111 334455555555554
Q ss_pred CCCCccceEEeccccc-------cCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHH
Q 020307 228 FASGFVDAVHAGAALH-------CWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEI 300 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~-------h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 300 (328)
+.+..|++.....-| |-....++.+++++.|||||++++.++......... .....++.+...+
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~--------dt~~~~ri~~a~V 189 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS--------DTITLHRIDPAVV 189 (238)
T ss_pred -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh--------hhhhhcccChHHH
Confidence 344566666432211 112235889999999999999999997654321111 1134567889999
Q ss_pred HHHHHHCCCeEEEE
Q 020307 301 EDLCTSCGLTNYTS 314 (328)
Q Consensus 301 ~~ll~~~Gf~~v~~ 314 (328)
++..+.+||+...+
T Consensus 190 ~a~veaaGFkl~ae 203 (238)
T COG4798 190 IAEVEAAGFKLEAE 203 (238)
T ss_pred HHHHHhhcceeeee
Confidence 99999999987653
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.9e-06 Score=70.24 Aligned_cols=72 Identities=22% Similarity=0.300 Sum_probs=55.1
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCc-cceEEec
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGF-VDAVHAG 239 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~-fD~i~~~ 239 (328)
.|+|+.||.|..+..+++.+. +|+++|+++..++.|+.++...|. ..++.++++|+.++. +.... +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv--~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGV--ADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 699999999999999999977 999999999999999999998775 678999999986542 22222 8999975
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.6e-05 Score=71.38 Aligned_cols=127 Identities=20% Similarity=0.213 Sum_probs=94.9
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CC
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FA 229 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~ 229 (328)
..+...++.+|||+.++.|.=+.+++....+ ..|+++|+++.-++..+.+++..| ..++..+..|...++ ..
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG---~~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG---VRNVIVVNKDARRLAELLPG 226 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC---CCceEEEecccccccccccc
Confidence 3477889999999999999988888887543 457999999999999999999987 556788888876554 22
Q ss_pred CCccceEEec------cccccCCCh----------------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHH
Q 020307 230 SGFVDAVHAG------AALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVL 284 (328)
Q Consensus 230 ~~~fD~i~~~------~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~ 284 (328)
.++||.|++. +++.--|+. ..+|..+.++|||||+|+.+|-+.....+......+
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~ 303 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERF 303 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHH
Confidence 2359999963 444322321 368999999999999999999766544444333333
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-05 Score=73.64 Aligned_cols=116 Identities=12% Similarity=0.113 Sum_probs=77.7
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHh-------CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKS-------GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 227 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-------~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 227 (328)
.++...++.+|+|..||+|.++..+.+. ....+++|+|+++.++..|+-++.-.+.. .....+..+|....+
T Consensus 40 ~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~-~~~~~i~~~d~l~~~ 118 (311)
T PF02384_consen 40 KLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID-NSNINIIQGDSLEND 118 (311)
T ss_dssp HHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH-CBGCEEEES-TTTSH
T ss_pred hhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc-ccccccccccccccc
Confidence 4455567779999999999999888763 24568999999999999998776544421 233467888875544
Q ss_pred CC--CCccceEEecccc--c-c-----CCC-------------hHHHHHHHHhcccCCcEEEEEEec
Q 020307 228 FA--SGFVDAVHAGAAL--H-C-----WPS-------------PSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 228 ~~--~~~fD~i~~~~vl--~-h-----~~d-------------~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
.. ...||+|+++--+ . + ..+ ...++..+.+.|++||++.+..|.
T Consensus 119 ~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 119 KFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp SCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred ccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 32 4789999986221 1 0 001 025789999999999999888875
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.3e-05 Score=71.04 Aligned_cols=106 Identities=14% Similarity=0.164 Sum_probs=67.1
Q ss_pred CCeEEEEcCCcCHH-HHHHHHh-CCCceEEEEeCCHHHHHHHHHHHH-hcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 162 GGLLVDVSCGSGLF-SRKFAKS-GTYSGVVALDFSENMLRQCYDFIK-QDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 162 ~~~vLDiGcG~G~~-~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~-~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
+.+|+=||||.=-+ +..+++. +++..++++|++++.++.+++... ..++ ..++.|+.+|....+..-..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L--~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL--SKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH---SSEEEEES-GGGG-GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc--cCCeEEEecchhccccccccCCEEEE
Confidence 35999999997544 4445543 556689999999999999998777 3344 67899999999777654568999997
Q ss_pred ccccccC-CChHHHHHHHHhcccCCcEEEEEE
Q 020307 239 GAALHCW-PSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 239 ~~vl~h~-~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.....-- .+..++|..+.+.++||..+++-.
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 7654422 256799999999999999999875
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.9e-06 Score=70.80 Aligned_cols=77 Identities=16% Similarity=0.286 Sum_probs=64.6
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
...+++..|||+|.|||.++..+.+.+. +|+++|+++.|+....++...-.. .....++.+|+...+++ .||.+
T Consensus 54 a~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp~--~~kLqV~~gD~lK~d~P--~fd~c 127 (315)
T KOG0820|consen 54 ADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTPK--SGKLQVLHGDFLKTDLP--RFDGC 127 (315)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCCc--cceeeEEecccccCCCc--cccee
Confidence 3456788999999999999999999987 999999999999999988765321 35789999999877644 78999
Q ss_pred Eec
Q 020307 237 HAG 239 (328)
Q Consensus 237 ~~~ 239 (328)
+++
T Consensus 128 VsN 130 (315)
T KOG0820|consen 128 VSN 130 (315)
T ss_pred ecc
Confidence 884
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.9e-06 Score=69.72 Aligned_cols=109 Identities=12% Similarity=0.194 Sum_probs=78.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CC---CCCCccce
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP---FASGFVDA 235 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp---~~~~~fD~ 235 (328)
..+.++||+=||+|.++.....+|. .+|+.+|.++..++..+++++..+. ..++.++..|... ++ ....+||+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~--~~~~~v~~~d~~~~l~~~~~~~~~fDi 117 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGL--EDKIRVIKGDAFKFLLKLAKKGEKFDI 117 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEESSHHHHHHHHHHCTS-EEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCC--CcceeeeccCHHHHHHhhcccCCCceE
Confidence 3688999999999999999999983 5899999999999999999988664 3468888888532 22 24678999
Q ss_pred EEeccccccCCC-hHHHHHHHH--hcccCCcEEEEEEecc
Q 020307 236 VHAGAALHCWPS-PSNAVAEIS--RILRSGGVFVGTTFLR 272 (328)
Q Consensus 236 i~~~~vl~h~~d-~~~~l~~~~--r~LkpgG~l~i~~~~~ 272 (328)
|++.=-... .. ...++..+. .+|+++|.+++.....
T Consensus 118 IflDPPY~~-~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 118 IFLDPPYAK-GLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEE--STTS-CHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred EEECCCccc-chHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 998532211 12 255677776 7899999999987554
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.7e-06 Score=71.25 Aligned_cols=97 Identities=21% Similarity=0.294 Sum_probs=64.0
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------CC--
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA-- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~-- 229 (328)
++.++||+||++|.|+..+.+++ +...|+|+|+.+.. . ..++.++++|+.+.. +.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------~-----~~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------P-----LQNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------S------TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------c-----ccceeeeecccchhhHHHhhhhhcccc
Confidence 56899999999999999999987 45699999998750 0 345666666653311 11
Q ss_pred CCccceEEeccccccCCCh-----------HHHHHHHHhcccCCcEEEEEEec
Q 020307 230 SGFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~-----------~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
.+.+|+|++..+.....++ ...+.-+...|+|||.+++..+.
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 2689999998854333322 23455666789999999998755
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.5e-05 Score=67.96 Aligned_cols=126 Identities=17% Similarity=0.092 Sum_probs=96.5
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCc-cceEEecc
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF-VDAVHAGA 240 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~-fD~i~~~~ 240 (328)
+.+++|||+|.|.=+.-++-..|+.+++-+|....-+...+....+-+ ..|+.++.+.++++.- +.. ||+|++..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~---L~nv~i~~~RaE~~~~-~~~~~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG---LENVEIVHGRAEEFGQ-EKKQYDVVTSRA 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC---CCCeEEehhhHhhccc-ccccCcEEEeeh
Confidence 579999999999999888877788899999999998888888877776 6789999999988763 223 99999987
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
+ .+...++.-...++|+||.++..-... ..+ -..+.+......|+.+.+..
T Consensus 144 v----a~L~~l~e~~~pllk~~g~~~~~k~~~-----------~~~---------e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 144 V----ASLNVLLELCLPLLKVGGGFLAYKGLA-----------GKD---------ELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred c----cchHHHHHHHHHhcccCCcchhhhHHh-----------hhh---------hHHHHHHHHHhhcCcEEEEE
Confidence 6 345666777788999999876533111 111 12466778888888877753
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.5e-06 Score=70.56 Aligned_cols=112 Identities=15% Similarity=0.193 Sum_probs=67.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh-------cCcCCCCCeEEEEecCCCCCCC
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DNTILTSNLALVRADVCRLPFA 229 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-------~~~~~~~~i~~~~~d~~~lp~~ 229 (328)
++..++...+|+|||.|......+......+.+|+|+.+...+.|...... .+. ...++.+..+|+.+.++.
T Consensus 38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~-~~~~v~l~~gdfl~~~~~ 116 (205)
T PF08123_consen 38 LNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK-RPGKVELIHGDFLDPDFV 116 (205)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB----EEEEECS-TTTHHHH
T ss_pred hCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc-ccccceeeccCccccHhH
Confidence 455678899999999999988777665445699999999988887654321 221 145678888998764421
Q ss_pred C---CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 230 S---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ~---~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
. ...|+|++++... -++....|.++..-||+|.+++.+.+
T Consensus 117 ~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~~~ 159 (205)
T PF08123_consen 117 KDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIISTKP 159 (205)
T ss_dssp HHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS-
T ss_pred hhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 1 3469999987643 12334667888888999988776443
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.8e-05 Score=66.67 Aligned_cols=100 Identities=24% Similarity=0.283 Sum_probs=73.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------CCC
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FAS 230 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~~ 230 (328)
.++.+|+|+|+..|.++..+++. ++...|+|+|+.+--. .+++.++++|+...+ +..
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~--------------~~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP--------------IPGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc--------------CCCceEEeeeccCccHHHHHHHHcCC
Confidence 46889999999999999999887 4444699999976321 568999999997644 334
Q ss_pred CccceEEecccc--------ccCCCh---HHHHHHHHhcccCCcEEEEEEeccC
Q 020307 231 GFVDAVHAGAAL--------HCWPSP---SNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 231 ~~fD~i~~~~vl--------~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
..+|+|++...= +|.... ..++.-+..+|+|||.+++-.+...
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 557999975432 222111 2456777789999999999886543
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.3e-05 Score=67.44 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=99.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH--Hh--cCcCCCCCeEEEEecCCCCC-CCCCccce
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI--KQ--DNTILTSNLALVRADVCRLP-FASGFVDA 235 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--~~--~~~~~~~~i~~~~~d~~~lp-~~~~~fD~ 235 (328)
...++|-+|.|.|..++++.+.-...+++-+|.+|.|++.+++.. .. .+....++++++..|+.++- -..+.||+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 456899999999999999998744679999999999999998443 22 12223678999999986542 23458999
Q ss_pred EEeccccccCCCh----------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHH
Q 020307 236 VHAGAALHCWPSP----------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 236 i~~~~vl~h~~d~----------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 305 (328)
|+.. ++|| ..+..-+.|.|+++|.+++..-..+..-. .| ..+..-++
T Consensus 369 vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~---------------vf---w~i~aTik 425 (508)
T COG4262 369 VIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPR---------------VF---WRIDATIK 425 (508)
T ss_pred EEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCc---------------ee---eeehhHHH
Confidence 9864 3555 36778899999999999997644331100 11 13456788
Q ss_pred HCCCeEEEEE----EeCcEEEEEEe
Q 020307 306 SCGLTNYTSK----VQQSFIMFAAQ 326 (328)
Q Consensus 306 ~~Gf~~v~~~----~~~~~~~~~a~ 326 (328)
++||.+.-.+ +.+.|-++++.
T Consensus 426 ~AG~~~~Pyhv~VPTFGeWGf~l~~ 450 (508)
T COG4262 426 SAGYRVWPYHVHVPTFGEWGFILAA 450 (508)
T ss_pred hCcceeeeeEEecCcccccceeecc
Confidence 8998765532 24555444444
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=3e-05 Score=78.31 Aligned_cols=110 Identities=16% Similarity=0.120 Sum_probs=79.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhC------------------------------------------CCceEEEEeCCHHHH
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSG------------------------------------------TYSGVVALDFSENML 198 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~------------------------------------------~~~~v~g~D~s~~~~ 198 (328)
++..++|..||+|.++...+... ....++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 46799999999999998876531 012689999999999
Q ss_pred HHHHHHHHhcCcCCCCCeEEEEecCCCCCCC--CCccceEEecccc-ccCCC---hHHHHHHHHhcc---cCCcEEEEEE
Q 020307 199 RQCYDFIKQDNTILTSNLALVRADVCRLPFA--SGFVDAVHAGAAL-HCWPS---PSNAVAEISRIL---RSGGVFVGTT 269 (328)
Q Consensus 199 ~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~--~~~fD~i~~~~vl-~h~~d---~~~~l~~~~r~L---kpgG~l~i~~ 269 (328)
+.|+.++...++ ...+.+.++|+.+++.+ .++||+|+++-=. +.+.+ ...+.+++.+.+ .+|+.+++.+
T Consensus 270 ~~A~~N~~~~g~--~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 270 QAARKNARRAGV--AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHHHHcCC--CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 999999998875 55789999999887643 3579999997321 12222 223334444444 4899888877
Q ss_pred ecc
Q 020307 270 FLR 272 (328)
Q Consensus 270 ~~~ 272 (328)
...
T Consensus 348 ~~~ 350 (702)
T PRK11783 348 SSP 350 (702)
T ss_pred CCH
Confidence 644
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.1e-05 Score=67.68 Aligned_cols=147 Identities=18% Similarity=0.153 Sum_probs=98.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH---HhcC--------------------c-------
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI---KQDN--------------------T------- 210 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~--------------------~------- 210 (328)
...+||--|||.|+++..|+..|+ .+-|=|+|--|+-.-.=.+ +..+ +
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 456899999999999999999988 7777787766653322111 0000 0
Q ss_pred -------CCCCCeEEEEecCCCCC---CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchh
Q 020307 211 -------ILTSNLALVRADVCRLP---FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT 280 (328)
Q Consensus 211 -------~~~~~i~~~~~d~~~lp---~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~ 280 (328)
.+........||+.+.- -..++||+|+..+-|.--.+....+..+..+|||||+++=..|..+......
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~- 306 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTH- 306 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCC-
Confidence 00122233445654321 1234799999888887777888999999999999999988777654221111
Q ss_pred hHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 281 GRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
...+...--++.+++..+.+..||++++..
T Consensus 307 -----g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 307 -----GVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred -----CCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 001133456889999999999999988854
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.8e-05 Score=72.36 Aligned_cols=101 Identities=13% Similarity=0.184 Sum_probs=81.8
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCccceEEec
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAG 239 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~i~~~ 239 (328)
+.+|||+-||+|..+..++...+ -.+|+++|+++..++.++++++..+ ..++.+++.|+..+- .....||+|...
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~---~~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS---VENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 35899999999999999998732 2489999999999999999998765 346889999986542 123579999975
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
- +..|..++..+.+.+++||.++++-
T Consensus 122 P----fGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 122 P----FGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C----CCCcHHHHHHHHHhcccCCEEEEEe
Confidence 4 2466789999999999999999974
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.9e-05 Score=69.44 Aligned_cols=88 Identities=23% Similarity=0.277 Sum_probs=69.1
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.++||+||++|.++..+.+++. +|++||..+ +...... .+++.....|......+.+.+|.++|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~-l~~~L~~---------~~~V~h~~~d~fr~~p~~~~vDwvVc 276 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGP-MAQSLMD---------TGQVEHLRADGFKFRPPRKNVDWLVC 276 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechh-cCHhhhC---------CCCEEEEeccCcccCCCCCCCCEEEE
Confidence 35789999999999999999999976 999999654 2222221 67899999887654323678999999
Q ss_pred ccccccCCChHHHHHHHHhcccCC
Q 020307 239 GAALHCWPSPSNAVAEISRILRSG 262 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~Lkpg 262 (328)
..+ ..|.++++-+.+.|..|
T Consensus 277 Dmv----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 277 DMV----EKPARVAELMAQWLVNG 296 (357)
T ss_pred ecc----cCHHHHHHHHHHHHhcC
Confidence 765 46899999999999776
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.5e-05 Score=69.43 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=82.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCC--------------------------------c-------eEEEEeCCHHHHHH
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------S-------GVVALDFSENMLRQ 200 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------~-------~v~g~D~s~~~~~~ 200 (328)
.++..++|-=||+|.++...+..+++ . .++|+|+++.+++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 45578999999999999998877641 1 27799999999999
Q ss_pred HHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecccc-ccCCCh---H----HHHHHHHhcccCCcEEEEEEe
Q 020307 201 CYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL-HCWPSP---S----NAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 201 a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl-~h~~d~---~----~~l~~~~r~LkpgG~l~i~~~ 270 (328)
|+.++...|+ ...|.|.++|+..++-+-+.+|+|+++--- +-+.+. . .+.+.+.+.++..+++++++.
T Consensus 270 Ak~NA~~AGv--~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 270 AKANARAAGV--GDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHhcCC--CceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 9999999987 788999999999887443789999997221 222222 1 344566667777777777663
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.6e-05 Score=64.72 Aligned_cols=108 Identities=19% Similarity=0.343 Sum_probs=76.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCc----CCCCCeEEEEecCCC-CCCCCCccce
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT----ILTSNLALVRADVCR-LPFASGFVDA 235 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~----~~~~~i~~~~~d~~~-lp~~~~~fD~ 235 (328)
+.-.+.|||||.|.++..|+..+|+.-++|+||-....++.++++..... ....++.+...+... +| +-|..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp---n~f~k 136 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP---NFFEK 136 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc---chhhh
Confidence 34579999999999999999999999999999999999999988865321 013455565555432 23 22222
Q ss_pred EEeccccccCCChH-------------HHHHHHHhcccCCcEEEEEEec
Q 020307 236 VHAGAALHCWPSPS-------------NAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 236 i~~~~vl~h~~d~~-------------~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
-.++-.+..++||. ..+.+..-+|++||.++..+-.
T Consensus 137 gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 137 GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 22333334456662 4688889999999999987743
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00078 Score=56.16 Aligned_cols=147 Identities=16% Similarity=0.184 Sum_probs=100.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCCCcc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFV 233 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~f 233 (328)
+...++.+||=+|..+|....+.++.-+...++++|+|+...+..-...+. .+|+--+.+|+.... .--+..
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-----R~Ni~PIL~DA~~P~~Y~~~Ve~V 146 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-----RPNIIPILEDARKPEKYRHLVEKV 146 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-----CCCceeeecccCCcHHhhhhcccc
Confidence 456789999999999999999999986577899999999988777666655 678888889986532 112458
Q ss_pred ceEEeccccccCCChH---HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCe
Q 020307 234 DAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
|+|+.. +..|. -+..++...||+||.++++--.+.-....--...+ .+-.+-|+..||+
T Consensus 147 Dviy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf-------------~~ev~kL~~~~f~ 208 (231)
T COG1889 147 DVIYQD-----VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVF-------------KDEVEKLEEGGFE 208 (231)
T ss_pred cEEEEe-----cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHH-------------HHHHHHHHhcCce
Confidence 888753 33443 45678889999999777755332100000000111 1233567888999
Q ss_pred EEEEEEeCcE----EEEEEe
Q 020307 311 NYTSKVQQSF----IMFAAQ 326 (328)
Q Consensus 311 ~v~~~~~~~~----~~~~a~ 326 (328)
+.+...-.+| .+++++
T Consensus 209 i~e~~~LePye~DH~~i~~~ 228 (231)
T COG1889 209 ILEVVDLEPYEKDHALIVAK 228 (231)
T ss_pred eeEEeccCCcccceEEEEEe
Confidence 9998776666 555554
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.2e-05 Score=74.24 Aligned_cols=76 Identities=12% Similarity=0.207 Sum_probs=54.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCC--------CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-----C
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P 227 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p 227 (328)
...+|||.+||+|.++..+++..+ ..+++|+|+++..+..++.++...+ ...+.+...|.... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~---~~~~~i~~~d~l~~~~~~~~ 107 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA---LLEINVINFNSLSYVLLNIE 107 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC---CCCceeeecccccccccccc
Confidence 356999999999999988877542 2578999999999999998876643 22345555553221 1
Q ss_pred CCCCccceEEec
Q 020307 228 FASGFVDAVHAG 239 (328)
Q Consensus 228 ~~~~~fD~i~~~ 239 (328)
-..+.||+|+.+
T Consensus 108 ~~~~~fD~IIgN 119 (524)
T TIGR02987 108 SYLDLFDIVITN 119 (524)
T ss_pred cccCcccEEEeC
Confidence 112579999986
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.8e-05 Score=59.51 Aligned_cols=106 Identities=20% Similarity=0.226 Sum_probs=73.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHH-----hCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAK-----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 234 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD 234 (328)
.+...|+|+|||.|+++..|+. . ++.+|+|+|.++..++.+.++.+..+.....+..+..++....+ .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 4677999999999999999998 4 57799999999999999998887654211345666666654432 145667
Q ss_pred eEEeccccccCCCh-HHHHHHHHhcccCCcEEEEEEeccC
Q 020307 235 AVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 235 ~i~~~~vl~h~~d~-~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
+++..+.-- +. ..+|+...+ ++-.+++..|.-+
T Consensus 102 ~~vgLHaCG---~Ls~~~l~~~~~---~~~~~l~~vpCCy 135 (141)
T PF13679_consen 102 ILVGLHACG---DLSDRALRLFIR---PNARFLVLVPCCY 135 (141)
T ss_pred EEEEeeccc---chHHHHHHHHHH---cCCCEEEEcCCcc
Confidence 777654433 33 244555444 6666676666543
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.2e-05 Score=69.86 Aligned_cols=102 Identities=23% Similarity=0.403 Sum_probs=87.0
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccc
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 243 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~ 243 (328)
++|-+|||.-.+...+-+.| ...++-+|+|+-.++....+-... .+-..+...|+..+.|++++||+|+.-+.++
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~----~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKE----RPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccC----CcceEEEEecchhccCCCcceeEEEecCccc
Confidence 89999999999999999887 458999999999988877664321 5678899999999999999999999999998
Q ss_pred cCCCh----------HHHHHHHHhcccCCcEEEEEEe
Q 020307 244 CWPSP----------SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 244 h~~d~----------~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
++-.+ ...+.++.|+|++||+++..+.
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 88422 2457899999999999888776
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.1e-05 Score=64.49 Aligned_cols=113 Identities=18% Similarity=0.109 Sum_probs=77.1
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC--CCCCCCccceEE
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFASGFVDAVH 237 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~--lp~~~~~fD~i~ 237 (328)
.+.+||++|.|. |..+..++...+...|...|-++..++-.++....+-.........+..+... .......||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 467999999995 55666666677788999999999999888776543211001122222222211 112356899999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
+...+..-..-..+.+.|.++|+|.|..++..|.+.
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg 144 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG 144 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccceeEecCccc
Confidence 998875444456788999999999999888777654
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=9.3e-05 Score=66.47 Aligned_cols=113 Identities=19% Similarity=0.251 Sum_probs=88.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCcc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFV 233 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~f 233 (328)
+...++.+|||+.++.|.=+..++.... ...+++.|++..-+...+.++...| ..++.....|..... .....|
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g---~~~v~~~~~D~~~~~~~~~~~~f 157 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG---VFNVIVINADARKLDPKKPESKF 157 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----SSEEEEESHHHHHHHHHHTTTE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC---CceEEEEeecccccccccccccc
Confidence 5667889999999999998888888743 5799999999999999999998877 667888878876541 223469
Q ss_pred ceEEec------cccccCCCh----------------HHHHHHHHhcc----cCCcEEEEEEecc
Q 020307 234 DAVHAG------AALHCWPSP----------------SNAVAEISRIL----RSGGVFVGTTFLR 272 (328)
Q Consensus 234 D~i~~~------~vl~h~~d~----------------~~~l~~~~r~L----kpgG~l~i~~~~~ 272 (328)
|.|+.. +++..-++. .++|+.+.+.+ ||||+++.+|-..
T Consensus 158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 999963 334443432 36799999999 9999999999543
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.1e-05 Score=67.00 Aligned_cols=95 Identities=14% Similarity=0.279 Sum_probs=69.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCC---Ccc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS---GFV 233 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~---~~f 233 (328)
+...++..|||||+|.|.++..|.+.+. +++++|+++.+.+..++++.. .+++.++.+|+..+.... ...
T Consensus 26 ~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~-----~~~~~vi~~D~l~~~~~~~~~~~~ 98 (262)
T PF00398_consen 26 LDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFAS-----NPNVEVINGDFLKWDLYDLLKNQP 98 (262)
T ss_dssp HTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTT-----CSSEEEEES-TTTSCGGGHCSSSE
T ss_pred cCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhh-----cccceeeecchhccccHHhhcCCc
Confidence 4455788999999999999999999984 999999999999999987763 679999999998876543 234
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccC
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRS 261 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~Lkp 261 (328)
..|+.+- -+ .-...++..+...-+.
T Consensus 99 ~~vv~Nl--Py-~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 99 LLVVGNL--PY-NISSPILRKLLELYRF 123 (262)
T ss_dssp EEEEEEE--TG-TGHHHHHHHHHHHGGG
T ss_pred eEEEEEe--cc-cchHHHHHHHhhcccc
Confidence 4555432 22 1123556666653344
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.6e-05 Score=60.12 Aligned_cols=59 Identities=25% Similarity=0.318 Sum_probs=50.4
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 225 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 225 (328)
++||+|||.|.++..+++.++..+++++|+++.+.+.++++++..+ ..++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~---~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN---LPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC---CCcEEEEEeeeeC
Confidence 4899999999999999999887789999999999999999988755 3467887777643
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00021 Score=59.33 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=80.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-CCCC--CccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFAS--GFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~--~~fD~i 236 (328)
-.+.++||+=+|+|.++.....+|. ..++.+|.+...+...+++++..+. ..+..++..|+... +-.. +.||+|
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~--~~~~~~~~~da~~~L~~~~~~~~FDlV 118 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGL--EGEARVLRNDALRALKQLGTREPFDLV 118 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCC--ccceEEEeecHHHHHHhcCCCCcccEE
Confidence 4789999999999999999999973 5899999999999999999887654 56788888888632 1112 259999
Q ss_pred Eeccccc-cCCChHHHHHH--HHhcccCCcEEEEEEec
Q 020307 237 HAGAALH-CWPSPSNAVAE--ISRILRSGGVFVGTTFL 271 (328)
Q Consensus 237 ~~~~vl~-h~~d~~~~l~~--~~r~LkpgG~l~i~~~~ 271 (328)
+..=-.+ -+.++...+.. -...|+|+|.+++....
T Consensus 119 flDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 119 FLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred EeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 9854333 11122333333 45779999999997743
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00082 Score=56.90 Aligned_cols=126 Identities=12% Similarity=0.079 Sum_probs=94.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
.+.++.||||-.+++..+|.+.++...+++.|+++..++.|.+++...++ .++++...+|-...=-.++.+|+|+..+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l--~~~i~vr~~dgl~~l~~~d~~d~ivIAG 93 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL--SERIDVRLGDGLAVLELEDEIDVIVIAG 93 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC--cceEEEeccCCccccCccCCcCEEEEeC
Confidence 35569999999999999999999988999999999999999999998886 7888888888733212345799998765
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
+=-- -...+|.+-.+.|+.=-++++... -...+++++|...+|+++.+
T Consensus 94 MGG~--lI~~ILee~~~~l~~~~rlILQPn------------------------~~~~~LR~~L~~~~~~I~~E 141 (226)
T COG2384 94 MGGT--LIREILEEGKEKLKGVERLILQPN------------------------IHTYELREWLSANSYEIKAE 141 (226)
T ss_pred CcHH--HHHHHHHHhhhhhcCcceEEECCC------------------------CCHHHHHHHHHhCCceeeee
Confidence 4110 124566666666664435555331 13468999999999988775
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.5e-05 Score=62.98 Aligned_cols=105 Identities=13% Similarity=0.234 Sum_probs=82.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC--CCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~i~ 237 (328)
.++++||.||-|-|.....+.++-| .+=+.+|..++.++..++..-. ...++..+.+--++. .++++.||.|.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~----ek~nViil~g~WeDvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWR----EKENVIILEGRWEDVLNTLPDKHFDGIY 174 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhcccc----cccceEEEecchHhhhccccccCcceeE
Confidence 5789999999999988888887755 3567899999998877764322 256787777765432 25688999999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
-..--+|..|...+.+.+.|+|||+|++-...
T Consensus 175 yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 175 YDTYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred eechhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 77666888888899999999999999886644
|
|
| >PRK11827 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=8.7e-06 Score=54.12 Aligned_cols=44 Identities=16% Similarity=0.369 Sum_probs=36.8
Q ss_pred cCcccccCCCchhhccCCCCccccccccCceeeCCCCccccCccceeeeeccc
Q 020307 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110 (328)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 110 (328)
.+.+.||.|++++...... +.+.|..|+..|++++|++.++...
T Consensus 6 LeILaCP~ckg~L~~~~~~---------~~Lic~~~~laYPI~dgIPVlL~de 49 (60)
T PRK11827 6 LEIIACPVCNGKLWYNQEK---------QELICKLDNLAFPLRDGIPVLLETE 49 (60)
T ss_pred HhheECCCCCCcCeEcCCC---------CeEECCccCeeccccCCccccCHHH
Confidence 3689999999999764432 5799999999999999999988763
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.8e-05 Score=70.53 Aligned_cols=65 Identities=25% Similarity=0.488 Sum_probs=50.2
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 225 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 225 (328)
+++...++ .|||+=||.|.++..+++... +|+|+|+++++++.|++++..++ ..++.|+.++.++
T Consensus 191 ~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~---i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 191 EWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNG---IDNVEFIRGDAED 255 (352)
T ss_dssp HHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE--SHH
T ss_pred HHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcC---CCcceEEEeeccc
Confidence 33454444 899999999999999999876 99999999999999999999877 6789999887654
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=8.7e-05 Score=61.43 Aligned_cols=103 Identities=19% Similarity=0.209 Sum_probs=77.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
.+++|||+|.|+|..+...++.| -..|+..|+.+......+-+.+.+ ...+.+...|..- .+..||+|+...
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~an----gv~i~~~~~d~~g---~~~~~Dl~LagD 150 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAAN----GVSILFTHADLIG---SPPAFDLLLAGD 150 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhc----cceeEEeeccccC---CCcceeEEEeec
Confidence 58899999999999999999887 457999999988888777776664 4577777777754 467899999999
Q ss_pred ccccCCChHHHHHHHHhcccC-CcEEEEEEecc
Q 020307 241 ALHCWPSPSNAVAEISRILRS-GGVFVGTTFLR 272 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~Lkp-gG~l~i~~~~~ 272 (328)
++..-+.-.+++. ..+.|+. |-.+++-+|.+
T Consensus 151 lfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 151 LFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred eecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 9876555567777 5555554 44555555543
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.4e-05 Score=61.65 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=77.6
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccc
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 241 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~v 241 (328)
.+.+.|+|.|+|-++...+.... +|++++.++...+.|.+++...+ ..++.++.+|+....| ...|+|+|-..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g---~~n~evv~gDA~~y~f--e~ADvvicEml 105 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPG---DVNWEVVVGDARDYDF--ENADVVICEML 105 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCC---CcceEEEecccccccc--cccceeHHHHh
Confidence 46899999999999988888755 99999999999999999876555 6799999999998887 35799997432
Q ss_pred --cccCCChHHHHHHHHhcccCCcEEEE
Q 020307 242 --LHCWPSPSNAVAEISRILRSGGVFVG 267 (328)
Q Consensus 242 --l~h~~d~~~~l~~~~r~LkpgG~l~i 267 (328)
.--......+++.+...||-++.++=
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 11112234677888888888887754
|
|
| >COG2835 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=1.5e-05 Score=52.43 Aligned_cols=44 Identities=23% Similarity=0.575 Sum_probs=37.8
Q ss_pred cCcccccCCCchhhccCCCCccccccccCceeeCCCCccccCccceeeeeccc
Q 020307 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110 (328)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 110 (328)
+++++||.|+++|...... +.+.|+.|+..|++.+|++.++...
T Consensus 6 LeiLaCP~~kg~L~~~~~~---------~~L~c~~~~~aYpI~dGIPvlL~~e 49 (60)
T COG2835 6 LEILACPVCKGPLVYDEEK---------QELICPRCKLAYPIRDGIPVLLPDE 49 (60)
T ss_pred heeeeccCcCCcceEeccC---------CEEEecccCceeecccCccccCchh
Confidence 4789999999998765543 5899999999999999999998763
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00085 Score=57.51 Aligned_cols=137 Identities=18% Similarity=0.206 Sum_probs=90.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEE-EecCCCCC---CCCCccce
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV-RADVCRLP---FASGFVDA 235 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~-~~d~~~lp---~~~~~fD~ 235 (328)
.++..+||+|+.||.|+..+.++|. ..|+++|..-..+..--+. .+++..+ ..++..+. +. +..|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~--------d~rV~~~E~tN~r~l~~~~~~-~~~d~ 147 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRN--------DPRVIVLERTNVRYLTPEDFT-EKPDL 147 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhc--------CCcEEEEecCChhhCCHHHcc-cCCCe
Confidence 4688999999999999999999973 5899999988766543321 5555444 34555442 32 36789
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhh----hccCCCCCHHHHHHHHHHCCCeE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI----LQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
+++.-++. ....+|..+..+++|++-++...-- .... ++...... ....+.--...+.++++..||.+
T Consensus 148 ~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~LvKP----QFEa-gr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~ 219 (245)
T COG1189 148 IVIDVSFI---SLKLILPALLLLLKDGGDLVLLVKP----QFEA-GREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQV 219 (245)
T ss_pred EEEEeehh---hHHHHHHHHHHhcCCCceEEEEecc----hhhh-hhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEE
Confidence 99876654 4578899999999999987775521 1111 11111100 01122223467888999999998
Q ss_pred EEE
Q 020307 312 YTS 314 (328)
Q Consensus 312 v~~ 314 (328)
...
T Consensus 220 ~gl 222 (245)
T COG1189 220 KGL 222 (245)
T ss_pred eee
Confidence 875
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.58 E-value=1.6e-05 Score=60.30 Aligned_cols=100 Identities=17% Similarity=0.243 Sum_probs=42.5
Q ss_pred EEEcCCcCHHHHHHHHhCCC---ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C-CCCCccceEEecc
Q 020307 166 VDVSCGSGLFSRKFAKSGTY---SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-FASGFVDAVHAGA 240 (328)
Q Consensus 166 LDiGcG~G~~~~~l~~~~~~---~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~~~~~fD~i~~~~ 240 (328)
||+|+..|..+..+++.... .+++++|..+. .+..++.++..++ ..++.++.++..+. + +..+++|+|+...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~--~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL--SDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------GGG---BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC--CCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 68999999988887765322 26999999985 2233333333332 55799999998542 2 3357899999866
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
. |-.+.....++.+.+.|+|||++++-+
T Consensus 78 ~-H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 D-HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C-CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2 111234567888999999999988743
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=6.6e-05 Score=63.15 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=71.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC----CCCCCccceE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVDAV 236 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD~i 236 (328)
....|+|.-||.|..+...+..++ .|+++|+++.-+..|+.+++-.|. ..++.|++||+.++ .+....+|+|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI--~~rItFI~GD~ld~~~~lq~~K~~~~~v 169 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGV--PDRITFICGDFLDLASKLKADKIKYDCV 169 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecC--CceeEEEechHHHHHHHHhhhhheeeee
Confidence 456899999999999999999988 999999999999999999998887 56999999998654 2334445666
Q ss_pred EeccccccCCChHHHHHHHHhcccCCc
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGG 263 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG 263 (328)
+.+---..-.-...-+-.+...++|.|
T Consensus 170 f~sppwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 170 FLSPPWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred ecCCCCCCcchhhhhhhhhhhhcchhH
Confidence 654321111111233444555555553
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00049 Score=62.00 Aligned_cols=89 Identities=10% Similarity=0.168 Sum_probs=70.0
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CCC
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FAS 230 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~ 230 (328)
.+...+++.++|.-+|.|..+..+.+..+..+|+|+|.++.+++.+++++... ..++.++.+++.++. ...
T Consensus 15 ~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~----~~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 15 GLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF----EGRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred hcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc----CCcEEEEeCCHHHHHHHHHhcCC
Confidence 45566788999999999999999998865579999999999999999988653 458999999987653 123
Q ss_pred CccceEEecccc--ccCCCh
Q 020307 231 GFVDAVHAGAAL--HCWPSP 248 (328)
Q Consensus 231 ~~fD~i~~~~vl--~h~~d~ 248 (328)
.++|.|++...+ +++.++
T Consensus 91 ~~vDgIl~DLGvSS~Qld~~ 110 (305)
T TIGR00006 91 TKIDGILVDLGVSSPQLDDP 110 (305)
T ss_pred CcccEEEEeccCCHhhcCCC
Confidence 579999986553 444444
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00081 Score=55.31 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=68.5
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe-cCCCC--------CC
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRL--------PF 228 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~l--------p~ 228 (328)
..|+.+|||+||..|.++.-..++ +|.+-|.|+|+-.- .. ...+.++++ |+.+. .+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p------~~Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EP------PEGATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cC------CCCcccccccccCCHHHHHHHHHhC
Confidence 357899999999999999988887 58889999998321 11 445666666 65442 13
Q ss_pred CCCccceEEeccccccC----CChH-------HHHHHHHhcccCCcEEEEEEeccC
Q 020307 229 ASGFVDAVHAGAALHCW----PSPS-------NAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~----~d~~-------~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
++...|+|++...=.-. .|.. .+|.-....++|+|.+++-.+...
T Consensus 133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 56789999986431111 1111 344555567789999999887643
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00063 Score=53.89 Aligned_cols=82 Identities=20% Similarity=0.314 Sum_probs=58.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCccceEEeccccccCC--------Ch---HHHHH
Q 020307 187 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAGAALHCWP--------SP---SNAVA 253 (328)
Q Consensus 187 ~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~i~~~~vl~h~~--------d~---~~~l~ 253 (328)
+|+|+|+-+++++..++++.+.+. ..++.++..+=+++. .+++++|+++.+.. ++| .+ ..+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~--~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL--EDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT---GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC--CCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHH
Confidence 589999999999999999999875 457999987765554 23358999998754 332 23 36788
Q ss_pred HHHhcccCCcEEEEEEecc
Q 020307 254 EISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 254 ~~~r~LkpgG~l~i~~~~~ 272 (328)
.+.++|+|||++.++.+..
T Consensus 77 ~al~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHHHEEEEEEEEEEE--S
T ss_pred HHHHhhccCCEEEEEEeCC
Confidence 9999999999999988654
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00071 Score=63.97 Aligned_cols=131 Identities=19% Similarity=0.228 Sum_probs=85.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCH----HHHHHHHHHHHhcCcCCCCCeEEEEecC-CCCCCCCCccc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE----NMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVD 234 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~----~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD 234 (328)
..-..|+|...|.|.|+.+|.+.. |..+..-+ +.+....+ .|+ .=+..|. +.++.=..+||
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~~~~ntL~vIyd----RGL------IG~yhDWCE~fsTYPRTYD 429 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPVSGPNTLPVIYD----RGL------IGVYHDWCEAFSTYPRTYD 429 (506)
T ss_pred cceeeeeeecccccHHHHHhccCC----ceEEEecccCCCCcchhhhh----ccc------chhccchhhccCCCCcchh
Confidence 344689999999999999998752 44444332 22222222 111 1111232 33443457999
Q ss_pred eEEeccccccCCC---hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 235 AVHAGAALHCWPS---PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 235 ~i~~~~vl~h~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
+|.+.+++.+..+ ...+|-|+.|+|+|||.+++-+... ...+++.++++..++.
T Consensus 430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~-----------------------vl~~v~~i~~~lrW~~ 486 (506)
T PF03141_consen 430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD-----------------------VLEKVKKIAKSLRWEV 486 (506)
T ss_pred heehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH-----------------------HHHHHHHHHHhCcceE
Confidence 9999999877753 4688999999999999999966211 1347788888888876
Q ss_pred EEEEEeC----cEEEEEEeC
Q 020307 312 YTSKVQQ----SFIMFAAQK 327 (328)
Q Consensus 312 v~~~~~~----~~~~~~a~k 327 (328)
....... .--+++++|
T Consensus 487 ~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 487 RIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred EEEecCCCCCCCceEEEEEC
Confidence 6544433 346666665
|
; GO: 0008168 methyltransferase activity |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0005 Score=59.57 Aligned_cols=145 Identities=14% Similarity=0.095 Sum_probs=87.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.+..+|+|||||.=-++.-+....+...|+|+|++..+++.....+... ..+..+...|+..-+ +....|+.++.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l----~~~~~~~v~Dl~~~~-~~~~~DlaLll 178 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL----GVPHDARVRDLLSDP-PKEPADLALLL 178 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT----T-CEEEEEE-TTTSH-TTSEESEEEEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh----CCCcceeEeeeeccC-CCCCcchhhHH
Confidence 3478999999999888887777777789999999999999999887765 457778888886553 35679999998
Q ss_pred cccccCCChH-HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeC
Q 020307 240 AALHCWPSPS-NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQ 318 (328)
Q Consensus 240 ~vl~h~~d~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~ 318 (328)
-+++.+.... ...-++...++- =.++++.|.+. .... .+.+.. .-...+.+++..-|+.+-+ ...+
T Consensus 179 K~lp~le~q~~g~g~~ll~~~~~-~~~vVSfPtrS--L~gR-~~gm~~--------~y~~~fe~~~~~~~~~~~~-~~~~ 245 (251)
T PF07091_consen 179 KTLPCLERQRRGAGLELLDALRS-PHVVVSFPTRS--LGGR-NKGMEQ--------TYSAWFEALAAERGWIVDR-LTFG 245 (251)
T ss_dssp T-HHHHHHHSTTHHHHHHHHSCE-SEEEEEEES----------TTHHH--------CHHHHHHHHCCTTCEEEEE-EEET
T ss_pred HHHHHHHHHhcchHHHHHHHhCC-CeEEEeccccc--cccC-cccccc--------CHHHHHHHhcccCCceeee-eecc
Confidence 8887764332 111222222321 25666666542 1100 000111 1235778888888888444 5554
Q ss_pred cEEE
Q 020307 319 SFIM 322 (328)
Q Consensus 319 ~~~~ 322 (328)
+-++
T Consensus 246 ~Elv 249 (251)
T PF07091_consen 246 NELV 249 (251)
T ss_dssp TEEE
T ss_pred ccee
Confidence 4444
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.002 Score=59.49 Aligned_cols=124 Identities=17% Similarity=0.157 Sum_probs=88.4
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCC
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FAS 230 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~ 230 (328)
..+.+.++.+|||..+..|.=+.+++.. .....+++.|.+.+.++..+.++...| ..+......|..++| ++.
T Consensus 235 ~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG---v~ntiv~n~D~~ef~~~~~~~ 311 (460)
T KOG1122|consen 235 MALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG---VTNTIVSNYDGREFPEKEFPG 311 (460)
T ss_pred eecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC---CCceEEEccCcccccccccCc
Confidence 3456788999999999998765555543 223489999999999999999998887 567777777876665 444
Q ss_pred CccceEEec----c--ccccCCC----------------hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhH
Q 020307 231 GFVDAVHAG----A--ALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR 282 (328)
Q Consensus 231 ~~fD~i~~~----~--vl~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~ 282 (328)
+||-|+.. . ++.--+. ..++|-.+..++++||+|+.+|-......+.+...
T Consensus 312 -~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~ 384 (460)
T KOG1122|consen 312 -SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVD 384 (460)
T ss_pred -ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHH
Confidence 89999853 3 3211000 13677888899999999999997665444444333
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00067 Score=54.45 Aligned_cols=101 Identities=14% Similarity=0.195 Sum_probs=63.3
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHH-HHHHHHhcCcCCCCCeEEEEecCC-CCCCCCCccceEEec
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQ-CYDFIKQDNTILTSNLALVRADVC-RLPFASGFVDAVHAG 239 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~-a~~~~~~~~~~~~~~i~~~~~d~~-~lp~~~~~fD~i~~~ 239 (328)
+++.+-+|+..=..=......| ..+++.+|.++--++. .++++ ..+...|+. +..--.++||.+.+.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~G-A~~iltveyn~L~i~~~~~dr~----------ssi~p~df~~~~~~y~~~fD~~as~ 70 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHG-AAKILTVEYNKLEIQEEFRDRL----------SSILPVDFAKNWQKYAGSFDFAASF 70 (177)
T ss_pred CceEEEEecCCchhhHHHHHcC-CceEEEEeecccccCccccccc----------ccccHHHHHHHHHHhhccchhhhee
Confidence 5678888887654444444444 4568888876422211 11110 112222321 111124689999999
Q ss_pred cccccCC-----Ch------HHHHHHHHhcccCCcEEEEEEeccC
Q 020307 240 AALHCWP-----SP------SNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 240 ~vl~h~~-----d~------~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
+++||+. || .+.+.++.++|||||.+++..|...
T Consensus 71 ~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 71 SSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred chhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 9999983 44 3678899999999999999998765
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00023 Score=67.19 Aligned_cols=65 Identities=17% Similarity=0.304 Sum_probs=56.6
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 225 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 225 (328)
++....+..+||+-||||.++..+++... .|+|++++++.++.|++++..+| ..|..|+++-+++
T Consensus 378 ~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~Ng---isNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 378 WAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQING---ISNATFIVGQAED 442 (534)
T ss_pred HhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcC---ccceeeeecchhh
Confidence 34556678999999999999999999765 99999999999999999998877 6799999995554
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00073 Score=57.10 Aligned_cols=107 Identities=10% Similarity=0.127 Sum_probs=56.9
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHh----CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----C--
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----F-- 228 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~-- 228 (328)
..++..|+|+|.-.|..+..++.. +...+|+|+|++...... +.++.+.. .+++++++||..+.. .
T Consensus 30 ~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~--~~rI~~i~Gds~d~~~~~~v~~ 105 (206)
T PF04989_consen 30 ELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPM--SPRITFIQGDSIDPEIVDQVRE 105 (206)
T ss_dssp HH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG------TTEEEEES-SSSTHHHHTSGS
T ss_pred HhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccc--cCceEEEECCCCCHHHHHHHHH
Confidence 345679999999999877766542 466799999996543321 11221111 479999999986542 1
Q ss_pred --CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 229 --ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 229 --~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
......+|+. .+-|...+..+.|+....++++|+++++.+.
T Consensus 106 ~~~~~~~vlVil-Ds~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 106 LASPPHPVLVIL-DSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp S----SSEEEEE-SS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred hhccCCceEEEE-CCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 1122334443 3333335567889999999999999999664
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00025 Score=49.14 Aligned_cols=46 Identities=24% Similarity=0.517 Sum_probs=30.4
Q ss_pred ccCcccccCCCchhhcc---C----------------CCCccccccccCceeeCCCCccccCccc
Q 020307 57 EGDLFSCPICYEPLIRK---G----------------PTGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (328)
Q Consensus 57 ~~~~l~CP~C~~~l~~~---~----------------~~~~~~~~~~~~~~~C~~C~~~~~~~~g 102 (328)
..++++||.|+++|... . ....-...+..+.+.|++|++.|++++|
T Consensus 4 llniL~Cp~ck~pL~~~~l~~~~~~~~~~lp~~~~~~~~~l~~~~i~eg~L~Cp~c~r~YPI~dG 68 (68)
T PF03966_consen 4 LLNILACPVCKGPLDWEALVETAQLGLSELPKELPEDYHVLLEVEIVEGELICPECGREYPIRDG 68 (68)
T ss_dssp GCGTBB-TTTSSBEHHHHHHHHHHCCCCHCHHCHHCHCEHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred HHhhhcCCCCCCcchHHHHHHHHHhCcccCCCCCccchhhhhcccccCCEEEcCCCCCEEeCCCC
Confidence 35789999999988100 0 0000012556789999999999999876
|
The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.015 Score=54.14 Aligned_cols=152 Identities=13% Similarity=0.138 Sum_probs=87.2
Q ss_pred CCeEEEEcCCcCHHHHHHHH--------h-------CCCceEEEEeCCHHHHHHHHHHHHhcC---------cC-CCCC-
Q 020307 162 GGLLVDVSCGSGLFSRKFAK--------S-------GTYSGVVALDFSENMLRQCYDFIKQDN---------TI-LTSN- 215 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~--------~-------~~~~~v~g~D~s~~~~~~a~~~~~~~~---------~~-~~~~- 215 (328)
..+|+|+|||+|.++..+.. + .|..+|+.-|.-.+-....-+.+.... +. ...+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 56899999999977654432 1 134577777764332222222211100 00 0001
Q ss_pred --eEEEEecCCCCCCCCCccceEEeccccccCCC-h-------------------------------------HHHHHHH
Q 020307 216 --LALVRADVCRLPFASGFVDAVHAGAALHCWPS-P-------------------------------------SNAVAEI 255 (328)
Q Consensus 216 --i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d-~-------------------------------------~~~l~~~ 255 (328)
+.-+.+.+..--|+.++.+++++++.+|++.. | ..+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222444333378999999999999988853 1 1244555
Q ss_pred HhcccCCcEEEEEEeccCCCC---c-----ch---hhHHHHH-------------hhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 256 SRILRSGGVFVGTTFLRYTSS---T-----SL---TGRVLRE-------------RILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 256 ~r~LkpgG~l~i~~~~~~~~~---~-----~~---~~~~~~~-------------~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
.+-|.|||+++++...+.+.. . .| +...+.. ...-...+.+.+|+++++++.|--.
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~ 303 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA 303 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence 667899999999987764211 0 01 1111111 1114456788999999999998755
Q ss_pred EE
Q 020307 312 YT 313 (328)
Q Consensus 312 v~ 313 (328)
++
T Consensus 304 I~ 305 (386)
T PLN02668 304 ID 305 (386)
T ss_pred ee
Confidence 54
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0063 Score=55.56 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=68.0
Q ss_pred ccccCCCeEEEEcCC-cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec-CCCCCCCCCccc
Q 020307 157 FKSAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-VCRLPFASGFVD 234 (328)
Q Consensus 157 l~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-~~~lp~~~~~fD 234 (328)
....|+.+|+-+|+| .|..+.++++.- ..+|+++|.+++-.+.|++. ..-.++... .....--.+.||
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~l---------GAd~~i~~~~~~~~~~~~~~~d 231 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKL---------GADHVINSSDSDALEAVKEIAD 231 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHh---------CCcEEEEcCCchhhHHhHhhCc
Confidence 345689999999988 256788888853 25999999999999999874 222333322 211111122499
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+|+..-. ...+....+.||+||.+++.-..
T Consensus 232 ~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 232 AIIDTVG-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 9987553 44578888999999999987755
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0034 Score=56.29 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=46.8
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEEecCC-----CCCCCCCccce
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVC-----RLPFASGFVDA 235 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~~-----~lp~~~~~fD~ 235 (328)
..++||||+|....--.|.....+.+++|.|+++..++.|++++... ++ ..+|.++...-. .+-...+.||+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L--~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL--ESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T---TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc--ccceEEEEcCCccccchhhhcccceeeE
Confidence 45899999998754333332212459999999999999999999887 65 677888765321 12223468999
Q ss_pred EEecccccc
Q 020307 236 VHAGAALHC 244 (328)
Q Consensus 236 i~~~~vl~h 244 (328)
.+|+--++.
T Consensus 181 tmCNPPFy~ 189 (299)
T PF05971_consen 181 TMCNPPFYS 189 (299)
T ss_dssp EEE-----S
T ss_pred EecCCcccc
Confidence 999765543
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.022 Score=52.50 Aligned_cols=152 Identities=20% Similarity=0.162 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHh----------------CCCceEEEEeCCHHHHHHHHHHHHhc----CcCCCCCeEEEE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKS----------------GTYSGVVALDFSENMLRQCYDFIKQD----NTILTSNLALVR 220 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~----------------~~~~~v~g~D~s~~~~~~a~~~~~~~----~~~~~~~i~~~~ 220 (328)
..-+|+|+||.+|..+..+... -|..+|+--|.-.+--...-+.+... .-....-+.-+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 4468999999999987766431 12347888886333222221111110 000011233345
Q ss_pred ecCCCCCCCCCccceEEeccccccCCC-h--------------------------------------HHHHHHHHhcccC
Q 020307 221 ADVCRLPFASGFVDAVHAGAALHCWPS-P--------------------------------------SNAVAEISRILRS 261 (328)
Q Consensus 221 ~d~~~lp~~~~~fD~i~~~~vl~h~~d-~--------------------------------------~~~l~~~~r~Lkp 261 (328)
+.+..--+++++.|+++++..||++.. | ..+|+.=.+-|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 666554478999999999999988842 1 1245555667899
Q ss_pred CcEEEEEEeccCCC--Cc-------chhhHHHHHh-------------hhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 262 GGVFVGTTFLRYTS--ST-------SLTGRVLRER-------------ILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 262 gG~l~i~~~~~~~~--~~-------~~~~~~~~~~-------------~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
||+++++.+.+... .. ..+...+... ..-...+.+.+++++.+++.|--.+
T Consensus 176 GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I 248 (334)
T PF03492_consen 176 GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEI 248 (334)
T ss_dssp EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEE
T ss_pred CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEE
Confidence 99999999877641 10 1122222221 1134557889999999988875333
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.076 Score=45.99 Aligned_cols=133 Identities=15% Similarity=0.085 Sum_probs=72.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCC-CCCccceEEe
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF-ASGFVDAVHA 238 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~-~~~~fD~i~~ 238 (328)
.|++||-+|=.. ..+..++..+...+++.+|+++..++..++..++.++ ++..+..|+.+ +|- -.++||+++.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl----~i~~~~~DlR~~LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL----PIEAVHYDLRDPLPEELRGKFDVFFT 118 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTTSS-BSEEEE
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC----ceEEEEecccccCCHHHhcCCCEEEe
Confidence 578999999544 3445555555667999999999999999999888763 49999999954 442 2478999997
Q ss_pred ccccccCCChHHHHHHHHhcccCCc-EEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEe
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGG-VFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ 317 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG-~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~ 317 (328)
.=. +-..-..-++......||..| ..++.-....+.... ..++++.+.+.||.+......
T Consensus 119 DPP-yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~------------------~~~~Q~~l~~~gl~i~dii~~ 179 (243)
T PF01861_consen 119 DPP-YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDK------------------WLEVQRFLLEMGLVITDIIPD 179 (243)
T ss_dssp ----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHH------------------HHHHHHHHHTS--EEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHH------------------HHHHHHHHHHCCcCHHHHHhh
Confidence 311 000011356788888888766 443322211100000 126788888999987765443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0069 Score=53.01 Aligned_cols=98 Identities=17% Similarity=0.211 Sum_probs=69.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC---CCccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~i 236 (328)
..|+.|+-+| -.-..+.+++-.+-..++..+|+++..+....+.+++.| ..++..+..|+.+ |++ .+.||++
T Consensus 151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g---~~~ie~~~~Dlr~-plpe~~~~kFDvf 225 (354)
T COG1568 151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG---YNNIEAFVFDLRN-PLPEDLKRKFDVF 225 (354)
T ss_pred cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC---ccchhheeehhcc-cChHHHHhhCCee
Confidence 3577899999 445566666665555689999999999999998888876 5678888889865 333 3679998
Q ss_pred EeccccccCCChHHHH-------HHHHhcccCC---cEEEEEEe
Q 020307 237 HAGAALHCWPSPSNAV-------AEISRILRSG---GVFVGTTF 270 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l-------~~~~r~Lkpg---G~l~i~~~ 270 (328)
+. ||...+ ..=...||.- |++.++.-
T Consensus 226 iT--------DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~r 261 (354)
T COG1568 226 IT--------DPPETIKALKLFLGRGIATLKGEGCAGYFGITRR 261 (354)
T ss_pred ec--------CchhhHHHHHHHHhccHHHhcCCCccceEeeeec
Confidence 74 564333 3333456654 67777653
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0041 Score=56.07 Aligned_cols=83 Identities=17% Similarity=0.294 Sum_probs=60.1
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C-
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F- 228 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~- 228 (328)
+.+...+++.++|.--|.|..+..+.+..++.+++|+|.++++++.+++++... ..++.++.+++.++. .
T Consensus 14 ~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~----~~r~~~~~~~F~~l~~~l~~~~ 89 (310)
T PF01795_consen 14 EALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF----DDRFIFIHGNFSNLDEYLKELN 89 (310)
T ss_dssp HHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC----CTTEEEEES-GGGHHHHHHHTT
T ss_pred HhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc----cceEEEEeccHHHHHHHHHHcc
Confidence 446677888999999999999999999877789999999999999999887653 468999999987764 2
Q ss_pred CCCccceEEeccc
Q 020307 229 ASGFVDAVHAGAA 241 (328)
Q Consensus 229 ~~~~fD~i~~~~v 241 (328)
....+|.|++.-.
T Consensus 90 ~~~~~dgiL~DLG 102 (310)
T PF01795_consen 90 GINKVDGILFDLG 102 (310)
T ss_dssp TTS-EEEEEEE-S
T ss_pred CCCccCEEEEccc
Confidence 3357888887533
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0052 Score=55.51 Aligned_cols=109 Identities=17% Similarity=0.081 Sum_probs=73.0
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC----CCCCCCCCccce
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV----CRLPFASGFVDA 235 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~----~~lp~~~~~fD~ 235 (328)
..++|||+|.|.|.-+.++....|.. +++.++.|+..-+.......... .....+...|+ ..+| ....|++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~---t~~td~r~s~vt~dRl~lp-~ad~ytl 188 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS---TEKTDWRASDVTEDRLSLP-AADLYTL 188 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc---cccCCCCCCccchhccCCC-ccceeeh
Confidence 45689999999999888888776643 47888888877766665543322 12222222232 2333 2346777
Q ss_pred EEeccccccCCChH---HHHHHHHhcccCCcEEEEEEeccC
Q 020307 236 VHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 236 i~~~~vl~h~~d~~---~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
|+..+-|-|..++. ..++.+..++.|||.|+++++..+
T Consensus 189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 189 AIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 77766665554432 478999999999999999997654
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.03 Score=48.93 Aligned_cols=111 Identities=16% Similarity=0.049 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCc--C-CCCCeEEEEecCCC---CCCCCCc-c
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT--I-LTSNLALVRADVCR---LPFASGF-V 233 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~--~-~~~~i~~~~~d~~~---lp~~~~~-f 233 (328)
...+||++|+|+|.-+..++... ..+|.-.|+..- ++....+....+. . ....+.....+-.+ ..+.... +
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 46689999999996666666543 458888886443 3333322211110 0 01133333322222 1122334 9
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
|+|+...++.+-..+..++..+...|..++.+++..+.+.
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999999998999999999999999998888776654
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.034 Score=53.95 Aligned_cols=101 Identities=22% Similarity=0.222 Sum_probs=70.0
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-----------C
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-----------L 226 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-----------l 226 (328)
..++.+|+-+|+|. |..+...++.. +.+|+++|.+++.++.+++. ...++..|..+ +
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl----------GA~~v~i~~~e~~~~~~gya~~~ 230 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM----------GAEFLELDFEEEGGSGDGYAKVM 230 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEEeccccccccccchhhhc
Confidence 45789999999998 77777777663 34899999999999888763 22222221111 0
Q ss_pred C----------CCC--CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 227 P----------FAS--GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 227 p----------~~~--~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
. +.+ +.+|+|+.......-+.|..+.++..+.+||||+++....
T Consensus 231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred chhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 011 3589999877655445565556999999999999887654
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.1 Score=46.25 Aligned_cols=151 Identities=9% Similarity=-0.045 Sum_probs=91.8
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-C-------CCCCCcc
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-------PFASGFV 233 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-------p~~~~~f 233 (328)
...|+.+|||-=.-...+.. .++.+++=+|. ++.++.-++.+.+.+.....+..++..|+.. + .+..+.-
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CcEEEEeCCccccHHHhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 34799999997655544432 22345555554 4455555555654332225678889999851 1 1222345
Q ss_pred ceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCc-chhhHHHHH-----hhhccCCCCCHHHHHHHHH
Q 020307 234 DAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVLRE-----RILQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 234 D~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~l~~ll~ 305 (328)
-++++-.++.+++.. ..+|+.+.+...||+.+++.....-.... ....+.... ........++.+++.++|+
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 239 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLA 239 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHH
Confidence 577788888888754 47889998888899888876544311100 000111111 1123445678999999999
Q ss_pred HCCCeEEEE
Q 020307 306 SCGLTNYTS 314 (328)
Q Consensus 306 ~~Gf~~v~~ 314 (328)
.+||+..+.
T Consensus 240 ~~Gw~~~~~ 248 (260)
T TIGR00027 240 ERGWRASEH 248 (260)
T ss_pred HCCCeeecC
Confidence 999998763
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.33 Score=42.16 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=71.9
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHH----hCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCC----CCCCCC
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC----RLPFAS 230 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~----~lp~~~ 230 (328)
...+..++|+|+|+..=++.|.+ .+.-.+++.+|+|...++...+.+..... .-.+.-+++|.+ .+| ..
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~--~l~v~~l~~~~~~~La~~~-~~ 152 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP--GLEVNALCGDYELALAELP-RG 152 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC--CCeEeehhhhHHHHHhccc-CC
Confidence 34577999999999876665554 34447899999999999886666554322 334555667763 233 22
Q ss_pred CccceEEeccccccCC-Ch-HHHHHHHHhcccCCcEEEEEEe
Q 020307 231 GFVDAVHAGAALHCWP-SP-SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~-d~-~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
++==.++....|..+. ++ ..+|..+...|+||-++++-+-
T Consensus 153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred CeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 2222333445566553 33 4789999999999998877554
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.07 Score=48.85 Aligned_cols=115 Identities=20% Similarity=0.166 Sum_probs=82.9
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCC----ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC---
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTY----SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--- 228 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~----~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--- 228 (328)
+|...++.+|||+....|.=+..+.+.... ..|++=|.+..-+...+..+.... .+++.+...|+...|-
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~---~~~~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP---SPNLLVTNHDASLFPNIYL 226 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC---Ccceeeecccceecccccc
Confidence 467789999999999999988888776432 279999999998888888775433 5566666666654441
Q ss_pred ------CCCccceEEec------cccccCCCh-----------------HHHHHHHHhcccCCcEEEEEEeccC
Q 020307 229 ------ASGFVDAVHAG------AALHCWPSP-----------------SNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 229 ------~~~~fD~i~~~------~vl~h~~d~-----------------~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
....||-|++. .++.+-++. ..+|+.-.++||+||.++.+|-...
T Consensus 227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 23458888863 333333321 2578888999999999999996544
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.012 Score=52.08 Aligned_cols=108 Identities=13% Similarity=0.175 Sum_probs=82.1
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCc-CCCCCeEEEEecCCCC--CCCCCccc
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL--PFASGFVD 234 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~~~~~i~~~~~d~~~l--p~~~~~fD 234 (328)
.....+++|-||.|.|.+.+..+++-.-.++.-+|++...++..++.+...-. ...+++.+..||-..+ ....++||
T Consensus 118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 34567899999999999999998884445789999999999999888764211 1267899999985332 13478999
Q ss_pred eEEeccccccCCCh---------HHHHHHHHhcccCCcEEEEEEe
Q 020307 235 AVHAGAALHCWPSP---------SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 235 ~i~~~~vl~h~~d~---------~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+|+... .|| ..++..+.+.||+||+++...-
T Consensus 198 Vii~ds-----sdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 198 VIITDS-----SDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEEEec-----CCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 999643 243 3577889999999999988763
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.025 Score=49.30 Aligned_cols=86 Identities=16% Similarity=0.047 Sum_probs=62.9
Q ss_pred ccccCCC--eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc------CcCCCCCeEEEEecCCCC-C
Q 020307 157 FKSAQGG--LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD------NTILTSNLALVRADVCRL-P 227 (328)
Q Consensus 157 l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~------~~~~~~~i~~~~~d~~~l-p 227 (328)
....++. +|||.-+|.|..+..++..|. +|+++|-++......++.+... +..-..++.++.+|.... .
T Consensus 82 vglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~ 159 (250)
T PRK10742 82 VGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT 159 (250)
T ss_pred hCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHh
Confidence 4445555 899999999999999999976 7999999999999888887763 100014688888887442 2
Q ss_pred CCCCccceEEecccccc
Q 020307 228 FASGFVDAVHAGAALHC 244 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h 244 (328)
-...+||+|++.=.+.|
T Consensus 160 ~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 160 DITPRPQVVYLDPMFPH 176 (250)
T ss_pred hCCCCCcEEEECCCCCC
Confidence 12347999998655544
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.021 Score=45.32 Aligned_cols=107 Identities=16% Similarity=0.207 Sum_probs=74.9
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
++...+.++.+|+|+|.|+.....++.+ -...+|+|+++-.+.+++-..-.++. .....|..-|+-+..+.+ |..
T Consensus 67 ll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~--~k~trf~RkdlwK~dl~d--y~~ 141 (199)
T KOG4058|consen 67 LLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGC--AKSTRFRRKDLWKVDLRD--YRN 141 (199)
T ss_pred HccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhc--ccchhhhhhhhhhccccc--cce
Confidence 4455566799999999999999999987 23789999999999988877666654 677888888887776554 444
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
++.+.+=.-++|.+ .++..-+..|..++..-+
T Consensus 142 vviFgaes~m~dLe---~KL~~E~p~nt~vvacRF 173 (199)
T KOG4058|consen 142 VVIFGAESVMPDLE---DKLRTELPANTRVVACRF 173 (199)
T ss_pred EEEeehHHHHhhhH---HHHHhhCcCCCeEEEEec
Confidence 44444422223332 344445667777776554
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.078 Score=49.22 Aligned_cols=98 Identities=24% Similarity=0.217 Sum_probs=68.4
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC------CCCCC-Cc
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR------LPFAS-GF 232 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~------lp~~~-~~ 232 (328)
++.+|+-+|||. |.++..+++...-.+++.+|.+++-++.|++.... ........+ ..... ..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---------~~~~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---------DVVVNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---------eEeecCccccHHHHHHHHhCCCC
Confidence 344999999998 88888888876567999999999999999884321 111111110 01112 26
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
+|+++-.-. -...+..+.+.++|||.+++.-....
T Consensus 239 ~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 239 ADVVIEAVG------SPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred CCEEEECCC------CHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 899985443 23468999999999999888776544
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.073 Score=47.92 Aligned_cols=103 Identities=18% Similarity=0.156 Sum_probs=70.6
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC--CCC------CC
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL------PF 228 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~l------p~ 228 (328)
..+++.+||-+|+|. |..+...++...-.+|+.+|+++..++.|++ +.. ..+....... ..+ -.
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga------~~~~~~~~~~~~~~~~~~v~~~~ 238 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA------TVTDPSSHKSSPQELAELVEKAL 238 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC------eEEeeccccccHHHHHHHHHhhc
Confidence 456789999999997 7777777777546699999999999999998 321 1111111100 010 02
Q ss_pred CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 229 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
....+|+.+....+ +..++.....+|.||.+++..+...
T Consensus 239 g~~~~d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 239 GKKQPDVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred cccCCCeEEEccCc------hHHHHHHHHHhccCCEEEEeccCCC
Confidence 23458888865543 4457778889999999888887665
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.074 Score=49.98 Aligned_cols=104 Identities=18% Similarity=0.224 Sum_probs=68.7
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-----C-CC-C
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-----L-PF-A 229 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-----l-p~-~ 229 (328)
...++.+||.+|+|. |..+..+++.....+++++|.+++..+.+++.. ...++...-.+ + .+ .
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---------~~~vi~~~~~~~~~~~l~~~~~ 251 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---------GAETINFEEVDDVVEALRELTG 251 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---------CcEEEcCCcchHHHHHHHHHcC
Confidence 345678999999988 888888888753336999999999988887631 11222111110 0 11 2
Q ss_pred CCccceEEeccc-----------cccC----CChHHHHHHHHhcccCCcEEEEEEe
Q 020307 230 SGFVDAVHAGAA-----------LHCW----PSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ~~~fD~i~~~~v-----------l~h~----~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
...+|+|+-.-. +.|. +++...+.++.+.|+++|+++....
T Consensus 252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 236898886421 1222 4566788999999999999988753
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.035 Score=49.52 Aligned_cols=82 Identities=18% Similarity=0.299 Sum_probs=66.0
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F 228 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~ 228 (328)
+.|...+++..+|.--|.|..+..+.+.++ ..+++|+|.++.+++.|++++... ..++.++...+.++. .
T Consensus 17 ~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~----~~r~~~v~~~F~~l~~~l~~~ 92 (314)
T COG0275 17 ELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF----DGRVTLVHGNFANLAEALKEL 92 (314)
T ss_pred HhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc----CCcEEEEeCcHHHHHHHHHhc
Confidence 346777889999999999999999998865 346999999999999999998775 468999998876653 2
Q ss_pred CCCccceEEecc
Q 020307 229 ASGFVDAVHAGA 240 (328)
Q Consensus 229 ~~~~fD~i~~~~ 240 (328)
..+.+|.|++.-
T Consensus 93 ~i~~vDGiL~DL 104 (314)
T COG0275 93 GIGKVDGILLDL 104 (314)
T ss_pred CCCceeEEEEec
Confidence 235788888653
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.011 Score=44.32 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCC
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS 194 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s 194 (328)
+....+|+|||+|.+...|...|. .-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY--PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC--Cccccccc
Confidence 455799999999999999999987 88999973
|
; GO: 0008168 methyltransferase activity |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.031 Score=46.36 Aligned_cols=109 Identities=12% Similarity=0.092 Sum_probs=77.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHH----hCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----- 227 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----- 227 (328)
+-..++..|+|+|.-.|..+...+. .|...+|+++|++-..+..+... .+++.|+.++-....
T Consensus 65 lw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--------~p~i~f~egss~dpai~eqi 136 (237)
T COG3510 65 LWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--------VPDILFIEGSSTDPAIAEQI 136 (237)
T ss_pred HHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--------CCCeEEEeCCCCCHHHHHHH
Confidence 3344567999999999876655554 36556999999987765544432 578999999876643
Q ss_pred --CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 228 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 228 --~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
.+++.--+.++-..-||.....+.|+.+.++|.-|-++++.+.+.+
T Consensus 137 ~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~ 184 (237)
T COG3510 137 RRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVN 184 (237)
T ss_pred HHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEeccccc
Confidence 2233334555556666665667788889999999999999887654
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.14 Score=51.77 Aligned_cols=108 Identities=12% Similarity=0.057 Sum_probs=67.5
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHH-HHHHHhcCcCCCCCeEEEEecC---CCCCCCCCccceEEe
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC-YDFIKQDNTILTSNLALVRADV---CRLPFASGFVDAVHA 238 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a-~~~~~~~~~~~~~~i~~~~~d~---~~lp~~~~~fD~i~~ 238 (328)
..+.-.|.|+=.....|.+.+|+.+++-+|-+...-+.+ +..+.... ....+++.+.- ....|++=+-=.|+.
T Consensus 484 ~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~---~ge~dILiGTQmiaKG~~fp~vtLVgvl~ 560 (730)
T COG1198 484 EHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFA---NGEADILIGTQMIAKGHDFPNVTLVGVLD 560 (730)
T ss_pred CeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHh---CCCCCeeecchhhhcCCCcccceEEEEEe
Confidence 368888889989999999999999999999877664332 22233222 33455555542 233455444445556
Q ss_pred ccccccCCChH---HHHHHHHhcc----c--CCcEEEEEEeccC
Q 020307 239 GAALHCWPSPS---NAVAEISRIL----R--SGGVFVGTTFLRY 273 (328)
Q Consensus 239 ~~vl~h~~d~~---~~l~~~~r~L----k--pgG~l~i~~~~~~ 273 (328)
.+..-+.+|.. ++++.+..+. + .-|.+++.+.+..
T Consensus 561 aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 561 ADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred chhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 66677777763 4444444333 1 4467888887765
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.058 Score=54.55 Aligned_cols=127 Identities=16% Similarity=0.105 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCcCHHHHHHHHh-------CC-----CceEEEEeCCH---HHHHHHH-----------HHHHh-----cC
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKS-------GT-----YSGVVALDFSE---NMLRQCY-----------DFIKQ-----DN 209 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~-------~~-----~~~v~g~D~s~---~~~~~a~-----------~~~~~-----~~ 209 (328)
+.-+|+|+|=|+|.+.....+. .+ ..+++++|..+ +.+..+. +.... .+
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 3468999999999865544432 12 35789999643 3332222 11111 01
Q ss_pred c------CCCCCeEEEEecCCC-CCCCCCccceEEeccccccCCCh----HHHHHHHHhcccCCcEEEEEEeccCCCCcc
Q 020307 210 T------ILTSNLALVRADVCR-LPFASGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLRYTSSTS 278 (328)
Q Consensus 210 ~------~~~~~i~~~~~d~~~-lp~~~~~fD~i~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~ 278 (328)
. ...-.+++..+|+.+ ++--...+|+++....- =-.+| ..+++.+.++++|||.+.-.+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~Fs-P~~np~~W~~~~~~~l~~~~~~~~~~~t~t--------- 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFA-PAKNPDMWSPNLFNALARLARPGATLATFT--------- 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCC-CccChhhccHHHHHHHHHHhCCCCEEEEee---------
Confidence 0 001244566778743 22123569999976421 11234 589999999999999988644
Q ss_pred hhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 279 LTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
....+++-|.++||++.+.
T Consensus 207 -----------------~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 207 -----------------SAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred -----------------hHHHHHHHHHHcCCeeeec
Confidence 2346788899999987653
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.17 Score=41.61 Aligned_cols=125 Identities=18% Similarity=0.132 Sum_probs=78.0
Q ss_pred EcCCcCHHHHHHHHhCC-CceEEE--EeCCHHHHHHHH---HHHHhcCcCCCCCe-EEEEecCCCCC----CCCCccceE
Q 020307 168 VSCGSGLFSRKFAKSGT-YSGVVA--LDFSENMLRQCY---DFIKQDNTILTSNL-ALVRADVCRLP----FASGFVDAV 236 (328)
Q Consensus 168 iGcG~G~~~~~l~~~~~-~~~v~g--~D~s~~~~~~a~---~~~~~~~~~~~~~i-~~~~~d~~~lp----~~~~~fD~i 236 (328)
||=|.=.|+..|++... ..++++ .|..++..+... .++.... ..++ .....|+..+. ...+.||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~---~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR---ELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh---hcCCccccCCCCCcccccccccCCcCCEE
Confidence 56666667788888744 445544 444433333222 2222211 1222 23445776654 356889999
Q ss_pred EeccccccCC-----C----------hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHH
Q 020307 237 HAGAALHCWP-----S----------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIE 301 (328)
Q Consensus 237 ~~~~vl~h~~-----d----------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 301 (328)
+.++ -|+. . ...+++.+..+|+++|.+.|+-....+ |+...+.
T Consensus 80 iFNF--PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p--------------------y~~W~i~ 137 (166)
T PF10354_consen 80 IFNF--PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP--------------------YDSWNIE 137 (166)
T ss_pred EEeC--CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC--------------------CccccHH
Confidence 9875 4544 1 136789999999999999998754321 4666888
Q ss_pred HHHHHCCCeEEEEEEe
Q 020307 302 DLCTSCGLTNYTSKVQ 317 (328)
Q Consensus 302 ~ll~~~Gf~~v~~~~~ 317 (328)
++.+++||..++....
T Consensus 138 ~lA~~~gl~l~~~~~F 153 (166)
T PF10354_consen 138 ELAAEAGLVLVRKVPF 153 (166)
T ss_pred HHHHhcCCEEEEEecC
Confidence 9999999998886543
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.051 Score=46.77 Aligned_cols=105 Identities=21% Similarity=0.288 Sum_probs=72.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~ 232 (328)
+..+++.+||-+|.++|....+..+. +|..-|+++|.|+..=+......+. .+|+.-+..|+.... ..-+-
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-----RtNiiPIiEDArhP~KYRmlVgm 226 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-----RTNIIPIIEDARHPAKYRMLVGM 226 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-----cCCceeeeccCCCchheeeeeee
Confidence 56778999999999999999888886 7888899999987644333322222 567777888885522 11235
Q ss_pred cceEEeccccccCCChH---HHHHHHHhcccCCcEEEEEEec
Q 020307 233 VDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~---~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+|+|++. ++.|. .+.-+..-.||+||.++++--.
T Consensus 227 VDvIFaD-----vaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 227 VDVIFAD-----VAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred EEEEecc-----CCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 6777653 33343 2334566789999999887643
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.18 Score=46.47 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=58.9
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
..++.+||-+|+|. |.++..++++ ....+++++|.+++-++.+++ + . .. ....+ +. .+..+|+|
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~-------~-~~-~~~~~---~~-~~~g~d~v 226 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A-------D-ET-YLIDD---IP-EDLAVDHA 226 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c-------C-ce-eehhh---hh-hccCCcEE
Confidence 34688999999876 6666666654 323589999999888777754 1 1 11 11111 11 11247888
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+-.-. . +.-...+....+.|++||++++.-.
T Consensus 227 iD~~G--~-~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 227 FECVG--G-RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred EECCC--C-CccHHHHHHHHHhCcCCcEEEEEee
Confidence 74221 0 0023468889999999999987654
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.044 Score=51.24 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=75.0
Q ss_pred CCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCC-CeEEEEecCCCCC-CCCCccceEE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NLALVRADVCRLP-FASGFVDAVH 237 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~-~i~~~~~d~~~lp-~~~~~fD~i~ 237 (328)
.+.+|||.=+|+|-=+..++.. ....+|+.-|+|++.++..+++++.+++ .. .+.+...|+..+= .....||+|=
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~--~~~~~~v~~~DAn~ll~~~~~~fD~ID 126 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL--EDERIEVSNMDANVLLYSRQERFDVID 126 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT---SGCCEEEEES-HHHHHCHSTT-EEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc--cCceEEEehhhHHHHhhhccccCCEEE
Confidence 3458999999999866666655 3345899999999999999999988775 33 5788888875532 2467899998
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
. .=+..|..+|..+.+.+|.||.|.++.-.
T Consensus 127 l----DPfGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 127 L----DPFGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp E------SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred e----CCCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 4 44567899999999999999999997643
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.009 Score=45.01 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=41.9
Q ss_pred ccceEEeccccccC----CCh--HHHHHHHHhcccCCcEEEEEEeccC--CCCcchhhHHHHHhhhccCCCCCHHHHHHH
Q 020307 232 FVDAVHAGAALHCW----PSP--SNAVAEISRILRSGGVFVGTTFLRY--TSSTSLTGRVLRERILQNYNYLTEEEIEDL 303 (328)
Q Consensus 232 ~fD~i~~~~vl~h~----~d~--~~~l~~~~r~LkpgG~l~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 303 (328)
.||+|+|..|.-++ .|. ..+++.+.+.|+|||++++..-... ..... ..+...... .... +.++++...
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~-~~~~~~~n~-~~i~-lrP~~F~~~ 77 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKR-LSEEIRENY-KSIK-LRPDQFEDY 77 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTT-S-HHHHHHH-HH-----GGGHHHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhh-hhHHHHhHH-hceE-EChHHHHHH
Confidence 48999999886433 122 4789999999999999998552111 00000 112222211 1122 566778888
Q ss_pred HHH--CCCeEEEE
Q 020307 304 CTS--CGLTNYTS 314 (328)
Q Consensus 304 l~~--~Gf~~v~~ 314 (328)
|.. .||..++.
T Consensus 78 L~~~evGF~~~e~ 90 (110)
T PF06859_consen 78 LLEPEVGFSSVEE 90 (110)
T ss_dssp HTSTTT---EEEE
T ss_pred HHhcccceEEEEE
Confidence 877 69987764
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF13719 zinc_ribbon_5: zinc-ribbon domain | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.0061 Score=36.62 Aligned_cols=35 Identities=20% Similarity=0.533 Sum_probs=23.5
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCcccc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (328)
...||.|+..+...+.. ++ .....++|++|++.|.
T Consensus 2 ~i~CP~C~~~f~v~~~~---l~-~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDK---LP-AGGRKVRCPKCGHVFR 36 (37)
T ss_pred EEECCCCCceEEcCHHH---cc-cCCcEEECCCCCcEee
Confidence 46799999977554321 11 1225899999999874
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.28 Score=47.63 Aligned_cols=142 Identities=18% Similarity=0.108 Sum_probs=90.4
Q ss_pred chHHHHHHhhHHhhhhc-----CCCCCcchh-----hhccccCCCeEEEEcCCcCHHHHHHHHhCC----CceEEEEeCC
Q 020307 129 PFVSFLYERGWRQNFNR-----SGFPGPDEE-----EYFKSAQGGLLVDVSCGSGLFSRKFAKSGT----YSGVVALDFS 194 (328)
Q Consensus 129 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~g~D~s 194 (328)
+.+...|+...++.... ..++.|... +.+.+.+..+|.|..||+|.++....+... ...++|.|++
T Consensus 144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~ 223 (489)
T COG0286 144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIN 223 (489)
T ss_pred cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCC
Confidence 34445555544443322 224444443 455555677999999999998777765421 2579999999
Q ss_pred HHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-C----CCCccceEEecccc---ccCC--------------------
Q 020307 195 ENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F----ASGFVDAVHAGAAL---HCWP-------------------- 246 (328)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~----~~~~fD~i~~~~vl---~h~~-------------------- 246 (328)
+.....|+-+.--++.. ..+....+|-..-| . ..+.||+|+++--+ .+..
T Consensus 224 ~~t~~l~~mN~~lhgi~--~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (489)
T COG0286 224 DTTYRLAKMNLILHGIE--GDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTK 301 (489)
T ss_pred HHHHHHHHHHHHHhCCC--ccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCC
Confidence 99999999988777642 14455555543333 2 33679988875221 1110
Q ss_pred -Ch-HHHHHHHHhcccCCcEEEEEEecc
Q 020307 247 -SP-SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 247 -d~-~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
.. ..+++.+...|+|||+..++.+..
T Consensus 302 ~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 302 NSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred CchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 01 468999999999999877776553
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.19 Score=38.96 Aligned_cols=46 Identities=17% Similarity=0.107 Sum_probs=40.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 207 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~ 207 (328)
.+++|+|||.+-|..+..++-+|. ..|+++++++...+..++.++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhh
Confidence 688999999999999999988874 5799999999999999887664
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.12 Score=47.43 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=79.3
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC-CCccceEEecc
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGA 240 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~i~~~~ 240 (328)
..+|||.=+|+|.=+..++...+...++.-|+|+..++..++++..+. ..+...+..|+..+-.. ...||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~---~~~~~v~n~DAN~lm~~~~~~fd~ID--- 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS---GEDAEVINKDANALLHELHRAFDVID--- 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC---cccceeecchHHHHHHhcCCCccEEe---
Confidence 679999999999887777777665589999999999999999988753 34555555676443221 36788876
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
|.=+..|..++..+.+.++.||++-++--.
T Consensus 127 -iDPFGSPaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 127 -IDPFGSPAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred -cCCCCCCchHHHHHHHHhhcCCEEEEEecc
Confidence 344567889999999999999999886543
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.1 Score=48.06 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=60.9
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
.++.+||-.|+|. |.++..+++.....+++++|.+++.++.+++. .. ..-+.....++.++....+.+|+|+-
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga-----~~vi~~~~~~~~~~~~~~g~~D~vid 241 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GA-----DKLVNPQNDDLDHYKAEKGYFDVSFE 241 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CC-----cEEecCCcccHHHHhccCCCCCEEEE
Confidence 3578999999875 66777777764223689999999988888762 10 00000001112111111235888764
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
. ...+ ..+....+.|++||++++...
T Consensus 242 ~-----~G~~-~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 242 V-----SGHP-SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred C-----CCCH-HHHHHHHHHhhcCCEEEEEcc
Confidence 3 3333 357888899999999988764
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.11 Score=50.49 Aligned_cols=97 Identities=20% Similarity=0.203 Sum_probs=66.3
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-------------
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR------------- 225 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~------------- 225 (328)
.++.++|-+|+|. |..+..+++.. +..|+++|.+++.++.++.. ...++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l----------Ga~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM----------GAEFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEeccccccccccccceeecC
Confidence 4578999999997 66666555552 33899999999987777652 12222222211
Q ss_pred ----------CCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEE
Q 020307 226 ----------LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVG 267 (328)
Q Consensus 226 ----------lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i 267 (328)
++-.-..+|+|+..-.+.--+.|.-+.+++.+.+|||++++=
T Consensus 231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 111124699998877676666776778999999999998763
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK00420 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.016 Score=43.92 Aligned_cols=30 Identities=30% Similarity=0.552 Sum_probs=23.1
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCccccCc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 100 (328)
-.||.|+.++..... +...|+.||..+...
T Consensus 24 ~~CP~Cg~pLf~lk~----------g~~~Cp~Cg~~~~v~ 53 (112)
T PRK00420 24 KHCPVCGLPLFELKD----------GEVVCPVHGKVYIVK 53 (112)
T ss_pred CCCCCCCCcceecCC----------CceECCCCCCeeeec
Confidence 469999999976332 689999999876443
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.034 Score=43.38 Aligned_cols=88 Identities=18% Similarity=0.175 Sum_probs=56.3
Q ss_pred CCeEEEEecCCC-CCCCCCccceEEeccccccCCCh----HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhh
Q 020307 214 SNLALVRADVCR-LPFASGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI 288 (328)
Q Consensus 214 ~~i~~~~~d~~~-lp~~~~~fD~i~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 288 (328)
..+.+..+|+.+ ++--+..||+|+.... ---.+| ..+++++.++++|||.+...+.
T Consensus 31 v~L~L~~gDa~~~l~~l~~~~Da~ylDgF-sP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~------------------ 91 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQLDARFDAWYLDGF-SPAKNPELWSEELFKKLARLSKPGGTLATYSS------------------ 91 (124)
T ss_dssp EEEEEEES-HHHHHHHB-T-EEEEEE-SS--TTTSGGGSSHHHHHHHHHHEEEEEEEEES--------------------
T ss_pred EEEEEEEcHHHHHHHhCcccCCEEEecCC-CCcCCcccCCHHHHHHHHHHhCCCcEEEEeec------------------
Confidence 356677778743 3322368999997642 222345 5899999999999998776331
Q ss_pred hccCCCCCHHHHHHHHHHCCCeEEEEEEe-CcEEEEEEeCC
Q 020307 289 LQNYNYLTEEEIEDLCTSCGLTNYTSKVQ-QSFIMFAAQKP 328 (328)
Q Consensus 289 ~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~-~~~~~~~a~k~ 328 (328)
...+++.|.++||.+.+.... +.--++.|.||
T Consensus 92 --------a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 92 --------AGAVRRALQQAGFEVEKVPGFGRKREMLRAVKP 124 (124)
T ss_dssp --------BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC-
T ss_pred --------hHHHHHHHHHcCCEEEEcCCCCCcchheEEEcC
Confidence 236889999999998875443 34577777775
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.05 Score=46.45 Aligned_cols=97 Identities=22% Similarity=0.288 Sum_probs=68.9
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCC---------ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTY---------SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----- 227 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~---------~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----- 227 (328)
-.+++|+....|.|+..|.++... ..++++|+-+-. ..+.+.-+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------------PI~GV~qlq~DIT~~stae~I 107 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------------PIEGVIQLQGDITSASTAEAI 107 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------------ccCceEEeecccCCHhHHHHH
Confidence 468999999999999999876321 128999984411 1568888999997743
Q ss_pred ---CCCCccceEEeccc-----cccCCCh------HHHHHHHHhcccCCcEEEEEEecc
Q 020307 228 ---FASGFVDAVHAGAA-----LHCWPSP------SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 228 ---~~~~~fD~i~~~~v-----l~h~~d~------~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
|.....|+|+|.+. +|.+..- ...|.-...+|||||.|+.--+..
T Consensus 108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg 166 (294)
T KOG1099|consen 108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG 166 (294)
T ss_pred HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc
Confidence 55668999999765 3333221 245677778999999998765543
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.095 Score=45.41 Aligned_cols=80 Identities=21% Similarity=0.166 Sum_probs=47.5
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH---hcCc---CCCCCeEEEEecCCC-CCCCCCccce
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK---QDNT---ILTSNLALVRADVCR-LPFASGFVDA 235 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~~---~~~~~i~~~~~d~~~-lp~~~~~fD~ 235 (328)
.+|||.-+|-|.-+..++..|. +|+++|-|+-+....++-+. ...- ....++.++.+|..+ ++.++.+||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 4899999999999998888775 99999999987666554332 2110 001378999999855 4555789999
Q ss_pred EEecccccc
Q 020307 236 VHAGAALHC 244 (328)
Q Consensus 236 i~~~~vl~h 244 (328)
|.+.=.+.|
T Consensus 155 VY~DPMFp~ 163 (234)
T PF04445_consen 155 VYFDPMFPE 163 (234)
T ss_dssp EEE--S---
T ss_pred EEECCCCCC
Confidence 998766655
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.36 Score=43.78 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=56.1
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
++.++|-+|+|. |.++..+++......++++|.+++.++.+... . ++ |.... ....+|+|+-.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---------~---~i--~~~~~--~~~g~Dvvid~ 207 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---------E---VL--DPEKD--PRRDYRAIYDA 207 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---------c---cc--Chhhc--cCCCCCEEEEC
Confidence 466889889876 77878787764223477889888766655431 0 01 11110 13458888743
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
- ..+ ..+..+.+.|+++|++++.-.
T Consensus 208 ~-----G~~-~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 208 S-----GDP-SLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred C-----CCH-HHHHHHHHhhhcCcEEEEEee
Confidence 3 233 357888999999999987654
|
|
| >PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.018 Score=31.53 Aligned_cols=24 Identities=25% Similarity=0.647 Sum_probs=18.8
Q ss_pred cccCCCchhhccCCCCccccccccCceeeCCCCcccc
Q 020307 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (328)
.||.|+..... ..-.|+.||+.|.
T Consensus 2 ~CP~C~~~V~~-------------~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 2 TCPECGAEVPE-------------SAKFCPHCGYDFE 25 (26)
T ss_pred cCCCCcCCchh-------------hcCcCCCCCCCCc
Confidence 59999987744 4678999998774
|
Several members are annotated as putative helicases. |
| >PRK09678 DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.025 Score=39.34 Aligned_cols=50 Identities=18% Similarity=0.422 Sum_probs=34.8
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeC--CCCccccCccceeeeeccc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCR--KCDKTYSSKDNYLDLTVIS 110 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~g~~~~~~~~ 110 (328)
++.||.|++..........+.. ....+..|. .||+.|...+.+...+...
T Consensus 1 mm~CP~Cg~~a~irtSr~~s~~-~~~~Y~qC~N~eCg~tF~t~es~s~tis~p 52 (72)
T PRK09678 1 MFHCPLCQHAAHARTSRYITDT-TKERYHQCQNVNCSATFITYESVQRYIVKP 52 (72)
T ss_pred CccCCCCCCccEEEEChhcChh-hheeeeecCCCCCCCEEEEEEEEEEEEcCC
Confidence 4689999997644333222222 555688998 9999998888877776653
|
|
| >COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.022 Score=40.61 Aligned_cols=30 Identities=27% Similarity=0.732 Sum_probs=22.9
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
+...||.|+.+-..... .++|.|..|+..|
T Consensus 34 ~~~~Cp~C~~~~VkR~a---------~GIW~C~kCg~~f 63 (89)
T COG1997 34 AKHVCPFCGRTTVKRIA---------TGIWKCRKCGAKF 63 (89)
T ss_pred cCCcCCCCCCcceeeec---------cCeEEcCCCCCee
Confidence 56789999998433332 3799999999877
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.081 Score=46.69 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=35.5
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCC--------CceEEEEeCCHHHHHHHHHHHHh
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIKQ 207 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~g~D~s~~~~~~a~~~~~~ 207 (328)
.-+|+|+|.|+|.++..+.+... ..+++-+|+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 36999999999999988876421 35899999999998888887765
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.15 Score=39.61 Aligned_cols=119 Identities=19% Similarity=0.181 Sum_probs=70.6
Q ss_pred CcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-----C-CCCCccceEEecccccc
Q 020307 171 GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P-FASGFVDAVHAGAALHC 244 (328)
Q Consensus 171 G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p-~~~~~fD~i~~~~vl~h 244 (328)
|.|.++..+++... .+++++|.++.-++.+++. .-..++..+-.++ . .....+|+|+-.-
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~---------Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~---- 66 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL---------GADHVIDYSDDDFVEQIRELTGGRGVDVVIDCV---- 66 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT---------TESEEEETTTSSHHHHHHHHTTTSSEEEEEESS----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh---------cccccccccccccccccccccccccceEEEEec----
Confidence 34777888888753 7999999999998888763 1112222211111 1 2234799988543
Q ss_pred CCChHHHHHHHHhcccCCcEEEEEEeccCCCCcch-hhHHHHHh-hhccCCCCCHHHHHHHHHH
Q 020307 245 WPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL-TGRVLRER-ILQNYNYLTEEEIEDLCTS 306 (328)
Q Consensus 245 ~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~l~~ll~~ 306 (328)
.. ...++....+|+|+|++++...... ...++ ....+... ........+.+++++.++.
T Consensus 67 -g~-~~~~~~~~~~l~~~G~~v~vg~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~ 127 (130)
T PF00107_consen 67 -GS-GDTLQEAIKLLRPGGRIVVVGVYGG-DPISFNLMNLMFKEITIRGSWGGSPEDFQEALQL 127 (130)
T ss_dssp -SS-HHHHHHHHHHEEEEEEEEEESSTST-SEEEEEHHHHHHTTEEEEEESSGGHHHHHHHHHH
T ss_pred -Cc-HHHHHHHHHHhccCCEEEEEEccCC-CCCCCCHHHHHhCCcEEEEEccCCHHHHHHHHHH
Confidence 22 4578999999999999999886651 12222 12222221 1133344456777776653
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=94.53 E-value=1 Score=44.02 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=56.3
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHH----HHHHHHHHHhcCcCCCCCeEEEEe-cCCC--CCCCCCccce
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENM----LRQCYDFIKQDNTILTSNLALVRA-DVCR--LPFASGFVDA 235 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~----~~~a~~~~~~~~~~~~~~i~~~~~-d~~~--lp~~~~~fD~ 235 (328)
..+--.|.|+=.....+.+.+|+..+.-+|-+... .+..-+.+.. ..+.++.+ ++.. +.++ .+++
T Consensus 262 ~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~------g~~~ILVgT~~i~kG~d~~--~v~l 333 (505)
T TIGR00595 262 EDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFAN------GKADILIGTQMIAKGHHFP--NVTL 333 (505)
T ss_pred CeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhc------CCCCEEEeCcccccCCCCC--cccE
Confidence 45677888888888899998888888888865322 2223333332 23344443 2211 2222 3445
Q ss_pred EE--eccccccCCCh---HHHHHHHH----hcc--cCCcEEEEEEeccCC
Q 020307 236 VH--AGAALHCWPSP---SNAVAEIS----RIL--RSGGVFVGTTFLRYT 274 (328)
Q Consensus 236 i~--~~~vl~h~~d~---~~~l~~~~----r~L--kpgG~l~i~~~~~~~ 274 (328)
|+ ..+..-+.+|- +..++.+. |.- ..+|.+++.+.....
T Consensus 334 V~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 334 VGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred EEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 53 33333344543 33333333 332 356889988876653
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.4 Score=46.01 Aligned_cols=106 Identities=9% Similarity=0.193 Sum_probs=76.8
Q ss_pred CCeEEEEcCCcCHHHHHHHHh----CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 162 GGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
...|+-+|.|-|-+.....+. ....+++++|-+++++...+.+ .... +..+++++..|+..++.+..+.|+++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~--W~~~Vtii~~DMR~w~ap~eq~DI~V 444 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFEC--WDNRVTIISSDMRKWNAPREQADIIV 444 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhh--hcCeeEEEeccccccCCchhhccchH
Confidence 457899999999876555432 2345789999999988776652 1111 36789999999999885557899988
Q ss_pred eccccccCCCh---HHHHHHHHhcccCCcEEEEEEec
Q 020307 238 AGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 238 ~~~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+ ..|.-+.|- ...|..+.+.|||+|+.+=..+.
T Consensus 445 S-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYt 480 (649)
T KOG0822|consen 445 S-ELLGSFGDNELSPECLDGAQKFLKPDGISIPSSYT 480 (649)
T ss_pred H-HhhccccCccCCHHHHHHHHhhcCCCceEccchhh
Confidence 5 334445443 36799999999999887655544
|
|
| >PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.029 Score=35.48 Aligned_cols=30 Identities=17% Similarity=0.438 Sum_probs=22.6
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
..+.||.||..+...... ..++|+.||...
T Consensus 2 ~~y~C~~CG~~~~~~~~~---------~~~~Cp~CG~~~ 31 (46)
T PRK00398 2 AEYKCARCGREVELDEYG---------TGVRCPYCGYRI 31 (46)
T ss_pred CEEECCCCCCEEEECCCC---------CceECCCCCCeE
Confidence 457899999988664432 378999998765
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.68 Score=40.40 Aligned_cols=96 Identities=23% Similarity=0.289 Sum_probs=60.4
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-----CCCCCcc
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASGFV 233 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~~f 233 (328)
.++.+||..|+|. |..+..+++.. +.++++++.+++..+.+++.- ...++...-... ....+.+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELG---------ADHVIDYKEEDLEEELRLTGGGGA 202 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhC---------CceeccCCcCCHHHHHHHhcCCCC
Confidence 5678999999986 66666666653 358999999988777765421 001111100000 0123568
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
|+++.... .+ ..+..+.+.|+++|.++.....
T Consensus 203 d~vi~~~~-----~~-~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 203 DVVIDAVG-----GP-ETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CEEEECCC-----CH-HHHHHHHHhcccCCEEEEEccC
Confidence 99885432 21 4577788999999998876644
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF13717 zinc_ribbon_4: zinc-ribbon domain | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.019 Score=34.20 Aligned_cols=34 Identities=18% Similarity=0.537 Sum_probs=22.5
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
.+.||.|+..+...+.. .+ -....++|++|++.|
T Consensus 2 ~i~Cp~C~~~y~i~d~~---ip-~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEK---IP-PKGRKVRCSKCGHVF 35 (36)
T ss_pred EEECCCCCCEEeCCHHH---CC-CCCcEEECCCCCCEe
Confidence 46799999977553321 11 111479999999876
|
|
| >PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.023 Score=33.31 Aligned_cols=30 Identities=37% Similarity=0.699 Sum_probs=15.6
Q ss_pred ccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 63 CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
||.||+++....+.+. ....+.|+.||...
T Consensus 3 C~~CG~~l~~~ip~gd-----~r~R~vC~~Cg~Ih 32 (34)
T PF14803_consen 3 CPQCGGPLERRIPEGD-----DRERLVCPACGFIH 32 (34)
T ss_dssp -TTT--B-EEE--TT------SS-EEEETTTTEEE
T ss_pred cccccChhhhhcCCCC-----CccceECCCCCCEE
Confidence 9999999876544321 12478999998653
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.98 Score=45.86 Aligned_cols=103 Identities=14% Similarity=0.101 Sum_probs=56.9
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHH----HHHHHHHHHHhcCcCCCCCeEEEEe-cCC--CCCCCCCccce
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSEN----MLRQCYDFIKQDNTILTSNLALVRA-DVC--RLPFASGFVDA 235 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~----~~~~a~~~~~~~~~~~~~~i~~~~~-d~~--~lp~~~~~fD~ 235 (328)
..+-..|-|+=.....+.+.+|+..+.-+|-+.. ..+..-+.+.. ..+.++.+ ++. .+.++ .+++
T Consensus 430 ~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~------g~~~ILVgT~~iakG~d~p--~v~l 501 (679)
T PRK05580 430 TDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFAR------GEADILIGTQMLAKGHDFP--NVTL 501 (679)
T ss_pred CeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhc------CCCCEEEEChhhccCCCCC--CcCE
Confidence 4577778888888888888888778888875432 23333333332 23344443 221 12222 3455
Q ss_pred EE--eccccccCCCh---HHHHHHHHhcc------cCCcEEEEEEeccC
Q 020307 236 VH--AGAALHCWPSP---SNAVAEISRIL------RSGGVFVGTTFLRY 273 (328)
Q Consensus 236 i~--~~~vl~h~~d~---~~~l~~~~r~L------kpgG~l~i~~~~~~ 273 (328)
|+ ..+..-+.+|. +.+++.+..+. ..+|.+++.+.+..
T Consensus 502 V~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 502 VGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred EEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 53 33334444543 34444443332 45789999887664
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.055 Score=47.81 Aligned_cols=106 Identities=16% Similarity=0.207 Sum_probs=63.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHH-------HHHH--hcCcCCCCCeEEEEecCCCCCC-CC
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY-------DFIK--QDNTILTSNLALVRADVCRLPF-AS 230 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~-------~~~~--~~~~~~~~~i~~~~~d~~~lp~-~~ 230 (328)
.+++|||+|||.|.-...+...+ ...+...|.+...++.-. ..+. .... ..-..+...++.+.-+ ..
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~--~~~~~i~~s~l~dg~~~~t 192 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKEN--HKVDEILNSLLSDGVFNHT 192 (282)
T ss_pred cCceeEecCCcccccchhhhhhc-cceeeeEecchhheeeecccceecchhhhhhhhhc--ccceeccccccccchhhhc
Confidence 57899999999998887777776 247888888877763211 0000 0000 0111111110001110 11
Q ss_pred C--ccceEEeccccccCCChHHH-HHHHHhcccCCcEEEEEE
Q 020307 231 G--FVDAVHAGAALHCWPSPSNA-VAEISRILRSGGVFVGTT 269 (328)
Q Consensus 231 ~--~fD~i~~~~vl~h~~d~~~~-l~~~~r~LkpgG~l~i~~ 269 (328)
+ .||+|.++..+.-....... +.....+++++|++++.-
T Consensus 193 ~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 193 ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence 2 78999998888776665555 667777889999887744
|
|
| >COG1645 Uncharacterized Zn-finger containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.025 Score=43.94 Aligned_cols=28 Identities=32% Similarity=0.574 Sum_probs=22.3
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
-...||.||.+|+..+ |.++|+.|++..
T Consensus 27 L~~hCp~Cg~PLF~Kd-----------G~v~CPvC~~~~ 54 (131)
T COG1645 27 LAKHCPKCGTPLFRKD-----------GEVFCPVCGYRE 54 (131)
T ss_pred HHhhCcccCCcceeeC-----------CeEECCCCCceE
Confidence 3456999999998844 699999998643
|
|
| >PHA00626 hypothetical protein | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.034 Score=35.99 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=20.8
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCcccc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (328)
+.||.|++.....-.. -.-.++.+.|+.||..|.
T Consensus 1 m~CP~CGS~~Ivrcg~----cr~~snrYkCkdCGY~ft 34 (59)
T PHA00626 1 MSCPKCGSGNIAKEKT----MRGWSDDYVCCDCGYNDS 34 (59)
T ss_pred CCCCCCCCceeeeece----ecccCcceEcCCCCCeec
Confidence 3699999953222100 001236899999998873
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.9 Score=40.44 Aligned_cols=113 Identities=16% Similarity=0.126 Sum_probs=65.0
Q ss_pred cccCCCeEEEEcCCcCH----HHHHHHHh---CCCceEEEEeC----CHHHHHHHHHHHHhcCcCCCCCeEEEEe---cC
Q 020307 158 KSAQGGLLVDVSCGSGL----FSRKFAKS---GTYSGVVALDF----SENMLRQCYDFIKQDNTILTSNLALVRA---DV 223 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~----~~~~l~~~---~~~~~v~g~D~----s~~~~~~a~~~~~~~~~~~~~~i~~~~~---d~ 223 (328)
...+.-.|+|+|.|.|. +...|+.+ -|..+++|++. +...++.+.+++....-...-...|... +.
T Consensus 107 ~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~ 186 (374)
T PF03514_consen 107 EGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESL 186 (374)
T ss_pred ccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCch
Confidence 33455689999999996 45555554 25678999999 8888888877765421000123333332 22
Q ss_pred CCCC-----CCCCccceEEeccccccCCC-------hHHHHHHHHhcccCCcEEEEEEec
Q 020307 224 CRLP-----FASGFVDAVHAGAALHCWPS-------PSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 224 ~~lp-----~~~~~fD~i~~~~vl~h~~d-------~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+.+. ..++..=+|-+...|||+.+ |...+-...+.|+|.-++ +++..
T Consensus 187 e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv-~~E~e 245 (374)
T PF03514_consen 187 EDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVV-LVEQE 245 (374)
T ss_pred hhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEE-EEeec
Confidence 3321 22333334445666788862 333444555678998444 44443
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.038 Score=31.33 Aligned_cols=26 Identities=19% Similarity=0.649 Sum_probs=14.5
Q ss_pred cccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
.||.|++.....+. ..+.|+.|++.+
T Consensus 4 ~Cp~C~se~~y~D~----------~~~vCp~C~~ew 29 (30)
T PF08274_consen 4 KCPLCGSEYTYEDG----------ELLVCPECGHEW 29 (30)
T ss_dssp --TTT-----EE-S----------SSEEETTTTEEE
T ss_pred CCCCCCCcceeccC----------CEEeCCcccccC
Confidence 59999998877554 489999998754
|
The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A. |
| >TIGR01206 lysW lysine biosynthesis protein LysW | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.085 Score=34.45 Aligned_cols=31 Identities=23% Similarity=0.581 Sum_probs=22.9
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
.+.||.|++.+...+.. . ...+.|+.||..+
T Consensus 2 ~~~CP~CG~~iev~~~~------~-GeiV~Cp~CGael 32 (54)
T TIGR01206 2 QFECPDCGAEIELENPE------L-GELVICDECGAEL 32 (54)
T ss_pred ccCCCCCCCEEecCCCc------c-CCEEeCCCCCCEE
Confidence 46799999988664321 1 2478999999988
|
This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.12 Score=49.19 Aligned_cols=121 Identities=18% Similarity=0.135 Sum_probs=83.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-------CCCCCCcc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-------LPFASGFV 233 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-------lp~~~~~f 233 (328)
.+..+|-+|-|.|.+...+....+..+++++++++.+++.|.+.+.-.. ..+..+...|-.. ..-.+..|
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---~~r~~V~i~dGl~~~~~~~k~~~~~~~~ 371 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---SDRNKVHIADGLDFLQRTAKSQQEDICP 371 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---hhhhhhhHhhchHHHHHHhhccccccCC
Confidence 4568899999999999999999888899999999999999998764321 1122333333211 11135678
Q ss_pred ceEEec----cccccCCCh------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHH
Q 020307 234 DAVHAG----AALHCWPSP------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR 285 (328)
Q Consensus 234 D~i~~~----~vl~h~~d~------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 285 (328)
|++... . .+-+..| ..+|..+...|.|.|.+++....+++...+-+...+.
T Consensus 372 dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~ 432 (482)
T KOG2352|consen 372 DVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLA 432 (482)
T ss_pred cEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhh
Confidence 988852 2 3333333 3678999999999999999887777655554443333
|
|
| >PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.04 Score=34.26 Aligned_cols=29 Identities=28% Similarity=0.592 Sum_probs=19.5
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
+.||.|++.....+. ..+.+.|+.||..-
T Consensus 1 m~Cp~Cg~~~~~~D~--------~~g~~vC~~CG~Vl 29 (43)
T PF08271_consen 1 MKCPNCGSKEIVFDP--------ERGELVCPNCGLVL 29 (43)
T ss_dssp ESBTTTSSSEEEEET--------TTTEEEETTT-BBE
T ss_pred CCCcCCcCCceEEcC--------CCCeEECCCCCCEe
Confidence 479999997633222 23788999998654
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.27 Score=44.03 Aligned_cols=125 Identities=18% Similarity=0.160 Sum_probs=76.9
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC--CCccceEEeccc
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA--SGFVDAVHAGAA 241 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~--~~~fD~i~~~~v 241 (328)
+++|+-||.|.+...+...| ...+.++|+++..++..+.++. .. ++.+|+.++... ...+|+++...-
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~--------~~-~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFP--------NK-LIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCC--------CC-CccCccccCchhhcCCCCCEEEeCCC
Confidence 68999999999999998887 3468999999999988877642 22 566777766432 357999997643
Q ss_pred cccC---------CChH-HHHHHHHh---cccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCC
Q 020307 242 LHCW---------PSPS-NAVAEISR---ILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG 308 (328)
Q Consensus 242 l~h~---------~d~~-~~l~~~~r---~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~G 308 (328)
...+ .|+. .++.++.+ .++|. +++.+.... + .. .......+.+.+.|++.|
T Consensus 72 Cq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g-----~-~~--------~~~~~~~~~i~~~l~~~G 135 (275)
T cd00315 72 CQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKG-----L-LT--------HDNGNTLKVILNTLEELG 135 (275)
T ss_pred ChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcc-----h-hc--------cCchHHHHHHHHHHHhCC
Confidence 2211 2333 23333333 34554 444443221 0 00 001123457888889999
Q ss_pred CeEEEE
Q 020307 309 LTNYTS 314 (328)
Q Consensus 309 f~~v~~ 314 (328)
|.+...
T Consensus 136 Y~~~~~ 141 (275)
T cd00315 136 YNVYWK 141 (275)
T ss_pred cEEEEE
Confidence 976554
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.95 Score=41.50 Aligned_cols=92 Identities=16% Similarity=0.102 Sum_probs=59.3
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
..++.+||-.|+|. |.++..+++.. +.++++++.+++-.+.+++. | .. .++ +.... ..+.+|+++
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~----G----a~-~vi--~~~~~--~~~~~d~~i 228 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALAL----G----AA-SAG--GAYDT--PPEPLDAAI 228 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHh----C----Cc-eec--ccccc--CcccceEEE
Confidence 45688999999764 55666666663 44899999999888777663 1 11 111 11111 123578765
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.... .+ ..+....+.|++||++++.-.
T Consensus 229 ~~~~-----~~-~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 229 LFAP-----AG-GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ECCC-----cH-HHHHHHHHhhCCCcEEEEEec
Confidence 4332 22 368889999999999988664
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=1 Score=45.44 Aligned_cols=96 Identities=18% Similarity=0.074 Sum_probs=59.3
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc-
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA- 240 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~- 240 (328)
+..+.-.|-|+-.....|.+.+|+..|.-+|-+. .++ .+ .....++.+.-...|...+.+.+|...+
T Consensus 430 s~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~-~l~----~~-------~~~~~IlVGTqgaepm~~g~~~lV~ilda 497 (665)
T PRK14873 430 SDRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQ-VVD----TV-------DAGPALVVATPGAEPRVEGGYGAALLLDA 497 (665)
T ss_pred CCcceeeeccHHHHHHHHHHHCCCCCEEEEChHH-HHH----hh-------ccCCCEEEECCCCcccccCCceEEEEEcc
Confidence 3457888999999999999999988999888542 222 12 1245667776433333345677776443
Q ss_pred -ccccCCCh---HHHHHHHHhcc------cCCcEEEEEE
Q 020307 241 -ALHCWPSP---SNAVAEISRIL------RSGGVFVGTT 269 (328)
Q Consensus 241 -vl~h~~d~---~~~l~~~~r~L------kpgG~l~i~~ 269 (328)
.+-+.+|- +.+++.+..+. +++|.+++.+
T Consensus 498 D~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~ 536 (665)
T PRK14873 498 WALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA 536 (665)
T ss_pred hhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence 23344544 45555444443 3468888775
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.21 Score=46.72 Aligned_cols=100 Identities=12% Similarity=0.180 Sum_probs=65.4
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC-CCccceEEeccc
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGAA 241 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~i~~~~v 241 (328)
..|||||.|||.++....+.+. ..|+++|.-..|.+.|++.....+. .++|.++.-.-.++..- ....|+++.-..
T Consensus 68 v~vLdigtGTGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kng~--SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKNGM--SDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcCCC--ccceeeeccccceeeecCcchhhhhhHhhh
Confidence 3689999999999999998874 4699999999999999999888775 77888776554443211 223566554322
Q ss_pred c-ccCCC-hHHHHHHHHhc-ccCCcEE
Q 020307 242 L-HCWPS-PSNAVAEISRI-LRSGGVF 265 (328)
Q Consensus 242 l-~h~~d-~~~~l~~~~r~-LkpgG~l 265 (328)
. |-+.. ....++++.+. +++|...
T Consensus 145 dtEligeGalps~qhAh~~L~~~nc~~ 171 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDMLLVDNCKT 171 (636)
T ss_pred hhhhhccccchhHHHHHHHhcccCCee
Confidence 1 11111 22345555544 4555443
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.34 Score=43.53 Aligned_cols=101 Identities=20% Similarity=0.203 Sum_probs=73.7
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
++.+|.-||.|. |.....++-- -+.+|+-+|+|.+.+++....+ ..++........++.-.-...|+++..
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~f-------~~rv~~~~st~~~iee~v~~aDlvIga 238 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDLF-------GGRVHTLYSTPSNIEEAVKKADLVIGA 238 (371)
T ss_pred CCccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHhh-------CceeEEEEcCHHHHHHHhhhccEEEEE
Confidence 456788899886 6666666543 3569999999999888877754 335666666554443333578999977
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
-.+---..|.-..+++.+.+|||++++=.-
T Consensus 239 VLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 239 VLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 666666788888999999999999886433
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.24 Score=42.96 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=29.1
Q ss_pred HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 249 SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 249 ~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
...++++.|+|||||.+++..... ....+..+++++||.+..
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~~~~-----------------------~~~~~~~al~~~GF~l~~ 93 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFYGWN-----------------------RVDRFMAAWKNAGFSVVG 93 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEeccc-----------------------cHHHHHHHHHHCCCEEee
Confidence 467899999999999887633110 012455677888997654
|
|
| >PRK10220 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.069 Score=39.78 Aligned_cols=33 Identities=18% Similarity=0.571 Sum_probs=26.2
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccccCcc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~ 101 (328)
.+-.||.|++.....+. ..+.|+.|+|.+...+
T Consensus 2 ~lP~CP~C~seytY~d~----------~~~vCpeC~hEW~~~~ 34 (111)
T PRK10220 2 SLPHCPKCNSEYTYEDN----------GMYICPECAHEWNDAE 34 (111)
T ss_pred CCCcCCCCCCcceEcCC----------CeEECCcccCcCCccc
Confidence 44579999999877665 4899999999886543
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.25 Score=44.49 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=42.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 207 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~ 207 (328)
.+|..|||-=+|+|..+.+..+.+- +++|+|++++.++.|++++..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence 5789999999999999999888876 999999999999999999754
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.93 Score=41.22 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=61.5
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC------CCCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFASG 231 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l------p~~~~ 231 (328)
..++.+||..|+|. |..+..+++.. +.++++++.++...+.+++. . +..+..+-... ....+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~--------g--~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKEL--------G--ADEVLNSLDDSPKDKKAAGLGG 231 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh--------C--CCEEEcCCCcCHHHHHHHhcCC
Confidence 45677888888764 77777777764 34799999999888877542 1 11111111110 12345
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.+|+|+.... ....++++.+.|+++|.++....
T Consensus 232 ~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 232 GFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CceEEEECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 6898875321 23468889999999999987643
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK00464 nrdR transcriptional regulator NrdR; Validated | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.054 Score=43.76 Aligned_cols=40 Identities=25% Similarity=0.529 Sum_probs=24.0
Q ss_pred ccccCCCchhhcc-CCCCccccccccCceeeCCCCccccCc
Q 020307 61 FSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (328)
Q Consensus 61 l~CP~C~~~l~~~-~~~~~~~~~~~~~~~~C~~C~~~~~~~ 100 (328)
+.||.|+++.... .....+.+.......+|++||..|..-
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~ 41 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTF 41 (154)
T ss_pred CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEe
Confidence 4699999976322 222222232333348999999988543
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.32 Score=42.21 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=41.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 207 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~ 207 (328)
.++..|||.=||+|..+....+.+- +++|+|+++...+.+.+++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHH
Confidence 4788999999999999999888876 999999999999999998865
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.23 Score=42.50 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=35.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 203 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~ 203 (328)
.++..|||.=||+|..+.+..+.+- +.+|+|+++...+.|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence 5789999999999999999999876 89999999999998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=92.78 E-value=1.9 Score=39.40 Aligned_cols=97 Identities=14% Similarity=0.081 Sum_probs=58.6
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCC---CC-C-CCC
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC---RL-P-FAS 230 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~---~l-p-~~~ 230 (328)
...++.+||-+|+|. |.++..+++.. +.+ ++++|.+++..+.+++. ... .++...-. .+ . ...
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~--------ga~-~~i~~~~~~~~~~~~~~~~ 229 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKAL--------GAD-FVINSGQDDVQEIRELTSG 229 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh--------CCC-EEEcCCcchHHHHHHHhCC
Confidence 345688999998864 56666666663 346 99999999888777542 111 11111000 01 0 112
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
..+|+|+-.. .. ...+....+.|+++|++++...
T Consensus 230 ~~~d~vid~~-----g~-~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 230 AGADVAIECS-----GN-TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CCCCEEEECC-----CC-HHHHHHHHHHhhcCCEEEEEcC
Confidence 3689887432 22 2346777889999999987654
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[] | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.056 Score=32.17 Aligned_cols=27 Identities=19% Similarity=0.554 Sum_probs=20.6
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCcc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 96 (328)
.+.|+.|++.+....+ +.+.|..||+.
T Consensus 8 ~~~C~~C~~~~~~~~d----------G~~yC~~cG~~ 34 (36)
T PF11781_consen 8 NEPCPVCGSRWFYSDD----------GFYYCDRCGHQ 34 (36)
T ss_pred CCcCCCCCCeEeEccC----------CEEEhhhCceE
Confidence 3569999998544333 79999999975
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.43 E-value=2.7 Score=37.46 Aligned_cols=95 Identities=22% Similarity=0.111 Sum_probs=58.3
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC----CCCCCCCCcc
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV----CRLPFASGFV 233 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~----~~lp~~~~~f 233 (328)
.++.+||-+|+|. |.++..+++.. +.+ ++++|.+++..+.+++. + ....+...+. ..+ .....+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~~----G----a~~~i~~~~~~~~~~~~-~~~~g~ 188 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALSF----G----ATALAEPEVLAERQGGL-QNGRGV 188 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHc----C----CcEecCchhhHHHHHHH-hCCCCC
Confidence 3678999999875 66667777664 334 89999998888777652 1 1111100010 001 012358
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
|+|+-. ...+ ..++...+.|+++|++++...
T Consensus 189 d~vid~-----~G~~-~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 189 DVALEF-----SGAT-AAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CEEEEC-----CCCh-HHHHHHHHHhcCCCEEEEecc
Confidence 888743 2223 457888999999999987664
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.049 Score=32.79 Aligned_cols=35 Identities=23% Similarity=0.562 Sum_probs=21.8
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCcccc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (328)
.+.||.|++.+...... ++ .....++|++|++.+.
T Consensus 2 ~~~CP~C~~~~~v~~~~---~~-~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 2 RIQCPNCKTSFRVVDSQ---LG-ANGGKVRCGKCGHVWY 36 (38)
T ss_pred EEECCCCCCEEEeCHHH---cC-CCCCEEECCCCCCEEE
Confidence 36799999976543211 00 0113689999998763
|
This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.84 Score=42.23 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=58.0
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeC---CHHHHHHHHHHHHhcCcCCCCCeEEEE---ecCCCCCCCCCc
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDF---SENMLRQCYDFIKQDNTILTSNLALVR---ADVCRLPFASGF 232 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~---s~~~~~~a~~~~~~~~~~~~~~i~~~~---~d~~~lp~~~~~ 232 (328)
.++.+||-+|+|. |.++..+++.. +.++++++. ++.-.+.+++. + ...+. .+..+. ...+.
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~----G------a~~v~~~~~~~~~~-~~~~~ 238 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEEL----G------ATYVNSSKTPVAEV-KLVGE 238 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHc----C------CEEecCCccchhhh-hhcCC
Confidence 4678999999876 67777777764 348999986 56666666542 1 11211 111110 01245
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+|+|+-.- ..+ ..+.+..+.|++||.+++...
T Consensus 239 ~d~vid~~-----g~~-~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 239 FDLIIEAT-----GVP-PLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CCEEEECc-----CCH-HHHHHHHHHccCCcEEEEEec
Confidence 88877543 223 367888999999999887654
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >TIGR00686 phnA alkylphosphonate utilization operon protein PhnA | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.1 Score=38.82 Aligned_cols=31 Identities=16% Similarity=0.487 Sum_probs=24.9
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCccccCcc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~ 101 (328)
-.||.|++.....+. ..+.|+.|+|.+...+
T Consensus 3 p~CP~C~seytY~dg----------~~~iCpeC~~EW~~~~ 33 (109)
T TIGR00686 3 PPCPKCNSEYTYHDG----------TQLICPSCLYEWNENE 33 (109)
T ss_pred CcCCcCCCcceEecC----------CeeECccccccccccc
Confidence 469999999877665 4899999999885543
|
The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997). |
| >PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [] | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.11 Score=30.23 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=23.5
Q ss_pred CcccccCCCchhhc-cCCCCccccccccCceeeCCCCcccc
Q 020307 59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 59 ~~l~CP~C~~~l~~-~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (328)
.+..|+.|++.... ... +.+.|..|+..++
T Consensus 2 ~~~~C~~C~~~~i~~~~~----------~~~~C~~Cg~~~~ 32 (33)
T PF08792_consen 2 NLKKCSKCGGNGIVNKED----------DYEVCIFCGSSFP 32 (33)
T ss_pred CceEcCCCCCCeEEEecC----------CeEEcccCCcEee
Confidence 45679999998876 333 5899999998774
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.69 Score=41.71 Aligned_cols=111 Identities=12% Similarity=0.068 Sum_probs=72.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhC--------------------CCceEEEEeCCHH--HHHHHHHHHHhc----------
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSG--------------------TYSGVVALDFSEN--MLRQCYDFIKQD---------- 208 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~--------------------~~~~v~g~D~s~~--~~~~a~~~~~~~---------- 208 (328)
+..+||-||.|-|.=...++... +..+++.+|+.+= .+......+...
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 34699999999987554444332 1248999998653 333333322221
Q ss_pred --Cc--CCCCCeEEEEecCCCCCCCC-------CccceEEeccccccC-----CChHHHHHHHHhcccCCcEEEEEEec
Q 020307 209 --NT--ILTSNLALVRADVCRLPFAS-------GFVDAVHAGAALHCW-----PSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 209 --~~--~~~~~i~~~~~d~~~lp~~~-------~~fD~i~~~~vl~h~-----~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
.. ...-++.|.+.|+..+..++ ...|+|+..+.++.+ +...++|..+...++||..|+|++.-
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 00 11346789999987765322 257899988877433 44568999999999999999998843
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.5 Score=40.69 Aligned_cols=95 Identities=17% Similarity=0.167 Sum_probs=53.9
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE-ecCCCCCCCCCccceEE
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLPFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~~lp~~~~~fD~i~ 237 (328)
.++.+||-.|+|. |.++..+++.. +.++++++.+.+....+.+.+ + . ..++. .+...+....+.+|+|+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~---G----a-~~vi~~~~~~~~~~~~~~~D~vi 252 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRL---G----A-DSFLVSTDPEKMKAAIGTMDYII 252 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhC---C----C-cEEEcCCCHHHHHhhcCCCCEEE
Confidence 4678888899875 67777777763 347888887765433222211 1 1 11111 01001100012477776
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
- .+..+ ..+.+..+.|++||+++...
T Consensus 253 d-----~~g~~-~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 253 D-----TVSAV-HALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred E-----CCCCH-HHHHHHHHHhcCCcEEEEeC
Confidence 3 23333 35788899999999988764
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.87 E-value=1.2 Score=44.49 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=65.4
Q ss_pred CeEEEEcCCcCHHHHHHHHh----CCCceEEEEeCCHHHHHHHHHHHHhcCcC------CCCCeEEEEecCCCCCCCC--
Q 020307 163 GLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTI------LTSNLALVRADVCRLPFAS-- 230 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~------~~~~i~~~~~d~~~lp~~~-- 230 (328)
..|+-+|+|-|-+.....+. +-..+++++|-++..+.....+......+ ....+.++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 36899999999876555443 44568999999966544444443221111 1345899999998764321
Q ss_pred ---------CccceEEeccccccCCCh---HHHHHHHHhcccC----CcE
Q 020307 231 ---------GFVDAVHAGAALHCWPSP---SNAVAEISRILRS----GGV 264 (328)
Q Consensus 231 ---------~~fD~i~~~~vl~h~~d~---~~~l~~~~r~Lkp----gG~ 264 (328)
+++|+|++ ..|--+.|- .+.|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 36999986 334444443 2568888888886 776
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.36 Score=41.04 Aligned_cols=111 Identities=21% Similarity=0.211 Sum_probs=62.9
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHHHHh---cCc-----------------------
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGT--YSGVVALDFSENMLRQCYDFIKQ---DNT----------------------- 210 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~v~g~D~s~~~~~~a~~~~~~---~~~----------------------- 210 (328)
...+.++.|-.||+|+++--+.-... -..|+|.|+++++++.|++++.- .|+
T Consensus 49 ~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl 128 (246)
T PF11599_consen 49 GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEAL 128 (246)
T ss_dssp S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 34567999999999998776654421 23799999999999999976531 000
Q ss_pred -------------CCCCCeEEEEecCCCCC-----CCCCccceEEecccc---ccCCC-----h-HHHHHHHHhcccCCc
Q 020307 211 -------------ILTSNLALVRADVCRLP-----FASGFVDAVHAGAAL---HCWPS-----P-SNAVAEISRILRSGG 263 (328)
Q Consensus 211 -------------~~~~~i~~~~~d~~~lp-----~~~~~fD~i~~~~vl---~h~~d-----~-~~~l~~~~r~LkpgG 263 (328)
.......+.+.|+.+.. -.....|+|+..--- -+|.. | ..+|..+..+|..++
T Consensus 129 ~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 129 ESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 12344667788876621 112336999875332 23322 2 378999999996666
Q ss_pred EEEEEE
Q 020307 264 VFVGTT 269 (328)
Q Consensus 264 ~l~i~~ 269 (328)
++.+++
T Consensus 209 VV~v~~ 214 (246)
T PF11599_consen 209 VVAVSD 214 (246)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 666633
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG3809 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.093 Score=36.48 Aligned_cols=37 Identities=22% Similarity=0.548 Sum_probs=25.9
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCccccCccce
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNY 103 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~ 103 (328)
++.||+|+-.+......++ ..-.|++|+-++..+...
T Consensus 1 ~llCP~C~v~l~~~~rs~v-------EiD~CPrCrGVWLDrGEL 37 (88)
T COG3809 1 MLLCPICGVELVMSVRSGV-------EIDYCPRCRGVWLDRGEL 37 (88)
T ss_pred CcccCcCCceeeeeeecCc-------eeeeCCccccEeecchhH
Confidence 3569999998866544322 356899999988766444
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.49 E-value=2 Score=39.73 Aligned_cols=97 Identities=16% Similarity=0.130 Sum_probs=59.5
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-----C-CCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P-FASG 231 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p-~~~~ 231 (328)
..++.+||-.|+|. |..+..+++.....+|+++|.++...+.+++. ... .++...-.+. . ....
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~--------Ga~-~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF--------GAT-HTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc--------CCc-eEEcCCCcCHHHHHHHHhCCC
Confidence 45688999999865 66777777764222599999999888887652 111 1111110110 0 1123
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.+|+|+- ....+ ..++...+.+++||++++...
T Consensus 245 g~d~vid-----~~g~~-~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 245 GADVVID-----AVGRP-ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCEEEE-----CCCCH-HHHHHHHHHhccCCEEEEECC
Confidence 5888774 33333 357778899999999987653
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >COG4306 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.066 Score=40.78 Aligned_cols=45 Identities=22% Similarity=0.496 Sum_probs=29.3
Q ss_pred cCcccccCCCchhhcc--CCCCccccccccCceeeCCCCccccCccc
Q 020307 58 GDLFSCPICYEPLIRK--GPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (328)
Q Consensus 58 ~~~l~CP~C~~~l~~~--~~~~~~~~~~~~~~~~C~~C~~~~~~~~g 102 (328)
..+..||+|..+..-. ......++.-|...-.|.+||..||..+.
T Consensus 37 ati~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwter 83 (160)
T COG4306 37 ATITQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWTER 83 (160)
T ss_pred HHHhcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcHHH
Confidence 3577899998765221 11122344446667889999999987643
|
|
| >KOG1088 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.1 Score=39.35 Aligned_cols=27 Identities=7% Similarity=0.327 Sum_probs=23.6
Q ss_pred cccCceeeCCCCccccCccceeeeecc
Q 020307 83 IYRSGFKCRKCDKTYSSKDNYLDLTVI 109 (328)
Q Consensus 83 ~~~~~~~C~~C~~~~~~~~g~~~~~~~ 109 (328)
+..|.+.|+.||+.|++.+|+++.+-.
T Consensus 94 v~EG~l~CpetG~vfpI~~GIPNMLL~ 120 (124)
T KOG1088|consen 94 VIEGELVCPETGRVFPISDGIPNMLLS 120 (124)
T ss_pred hccceEecCCCCcEeecccCCcccccC
Confidence 456899999999999999999998754
|
|
| >PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.092 Score=39.91 Aligned_cols=22 Identities=32% Similarity=0.921 Sum_probs=18.6
Q ss_pred ccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 63 CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
||+|++++.. ..+.|++|+...
T Consensus 1 CPvCg~~l~v-------------t~l~C~~C~t~i 22 (113)
T PF09862_consen 1 CPVCGGELVV-------------TRLKCPSCGTEI 22 (113)
T ss_pred CCCCCCceEE-------------EEEEcCCCCCEE
Confidence 9999999966 589999997654
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.6 Score=42.90 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=38.1
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHh----CC----CceEEEEeCCHHHHHHHHHHHHh
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKS----GT----YSGVVALDFSENMLRQCYDFIKQ 207 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~----~~----~~~v~g~D~s~~~~~~a~~~~~~ 207 (328)
.+....++|+|.|.|.++..+.+. .| ..++.-+|+|++..+.=++.++.
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 344568999999999988777654 22 56899999999988877776664
|
|
| >PF13240 zinc_ribbon_2: zinc-ribbon domain | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.092 Score=27.84 Aligned_cols=22 Identities=23% Similarity=0.588 Sum_probs=16.3
Q ss_pred cccCCCchhhccCCCCccccccccCceeeCCCCcc
Q 020307 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (328)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 96 (328)
.||.||..+.. +.-.|++||+.
T Consensus 1 ~Cp~CG~~~~~-------------~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIED-------------DAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCC-------------cCcchhhhCCc
Confidence 39999988743 35669999864
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=91.19 E-value=1.8 Score=40.31 Aligned_cols=96 Identities=27% Similarity=0.235 Sum_probs=59.1
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-----CCCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASG 231 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~ 231 (328)
..++.+||-.|+|. |.++..+++.. +. +|+++|.+++..+.+++. ... .++..+-.++ ....+
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~~--------Ga~-~~i~~~~~~~~~~i~~~~~~ 258 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALAREL--------GAT-ATVNAGDPNAVEQVRELTGG 258 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHHc--------CCc-eEeCCCchhHHHHHHHHhCC
Confidence 45678898899875 66777777764 33 699999999988887652 111 1111110110 01123
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.+|+|+-.- ..+ ..+....+.|+++|+++....
T Consensus 259 g~d~vid~~-----G~~-~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 259 GVDYAFEMA-----GSV-PALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCCEEEECC-----CCh-HHHHHHHHHHhcCCEEEEEcc
Confidence 588887432 222 457788899999999887653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.14 Score=29.53 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=15.4
Q ss_pred cccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
-||.||++....... ....|+.|++.+
T Consensus 5 fC~~CG~~t~~~~~g---------~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 5 FCGRCGAPTKPAPGG---------WARRCPSCGHEH 31 (32)
T ss_dssp B-TTT--BEEE-SSS---------S-EEESSSS-EE
T ss_pred ccCcCCccccCCCCc---------CEeECCCCcCEe
Confidence 399999987665432 478999998753
|
; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A. |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.12 E-value=1 Score=39.55 Aligned_cols=88 Identities=23% Similarity=0.281 Sum_probs=65.3
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++...+|+|...|.++..|.+++- .|+++|..+ |.+..-. ...++....|-.+..-.....|-.+|
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m--~V~aVDng~-ma~sL~d---------tg~v~h~r~DGfk~~P~r~~idWmVC 276 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNM--RVYAVDNGP-MAQSLMD---------TGQVTHLREDGFKFRPTRSNIDWMVC 276 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcce--EEEEeccch-hhhhhhc---------ccceeeeeccCcccccCCCCCceEEe
Confidence 45788999999999999999999876 999999754 3322222 66788888887665434567898888
Q ss_pred ccccccCCChHHHHHHHHhcccCC
Q 020307 239 GAALHCWPSPSNAVAEISRILRSG 262 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~Lkpg 262 (328)
..| ..|.++-..+...|..|
T Consensus 277 DmV----EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 277 DMV----EKPARVAALIAKWLVNG 296 (358)
T ss_pred ehh----cCcHHHHHHHHHHHHcc
Confidence 664 67887777777777654
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.11 E-value=1 Score=42.66 Aligned_cols=110 Identities=23% Similarity=0.149 Sum_probs=68.6
Q ss_pred CCCeEEEEcCCcCHHHHHH--HHhCCCceEEEEeCCHHHHHHHHHHHHh--cCc-CCCCCeEEEEecCCCCCCC-CCccc
Q 020307 161 QGGLLVDVSCGSGLFSRKF--AKSGTYSGVVALDFSENMLRQCYDFIKQ--DNT-ILTSNLALVRADVCRLPFA-SGFVD 234 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l--~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~-~~~~~i~~~~~d~~~lp~~-~~~fD 234 (328)
....+.|+|.|.|.-...+ ........+..||.|..|.....+.... +.. ....++.+.. ..+|.. ...||
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r---~~~pi~~~~~yD 276 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHR---QRLPIDIKNGYD 276 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhc---ccCCCCccccee
Confidence 3457888888876533333 3333344799999999999988877654 110 0001111111 123433 34599
Q ss_pred eEEeccccccCCChH---HHHHHH-HhcccCCcEEEEEEeccC
Q 020307 235 AVHAGAALHCWPSPS---NAVAEI-SRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~---~~l~~~-~r~LkpgG~l~i~~~~~~ 273 (328)
+|++.+.++++.++. ...+++ .+..++|+.+++.+....
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 999999999998775 233333 456688999999887544
|
|
| >COG1656 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.094 Score=42.39 Aligned_cols=41 Identities=24% Similarity=0.532 Sum_probs=25.1
Q ss_pred ccCcccccCCCchhhccCCCCcc------ccccccCceeeCCCCccc
Q 020307 57 EGDLFSCPICYEPLIRKGPTGLT------LGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~------~~~~~~~~~~C~~C~~~~ 97 (328)
+.+.-+||.|++++.......+. .-..+...++|++||..|
T Consensus 94 ~~e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiY 140 (165)
T COG1656 94 FPEFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIY 140 (165)
T ss_pred ccccccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCcccc
Confidence 34577899999987553322100 011133467899999877
|
|
| >PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.14 Score=38.76 Aligned_cols=31 Identities=19% Similarity=0.536 Sum_probs=23.4
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCccccCc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 100 (328)
.-.||.||..+.-.+. ....|+.||..|+..
T Consensus 9 KR~Cp~CG~kFYDLnk----------~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 9 KRTCPSCGAKFYDLNK----------DPIVCPKCGTEFPPE 39 (108)
T ss_pred cccCCCCcchhccCCC----------CCccCCCCCCccCcc
Confidence 3469999998854332 478899999999655
|
The function of members of this family is unknown. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=91.04 E-value=1 Score=42.70 Aligned_cols=90 Identities=10% Similarity=0.024 Sum_probs=57.7
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
.++.+|+-+|+|. |.....+++.. +.+|+.+|.++...+.|+.. ..... +..+. . ...|+|+.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~----------G~~~~--~~~e~-v--~~aDVVI~ 263 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME----------GYEVM--TMEEA-V--KEGDIFVT 263 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc----------CCEEc--cHHHH-H--cCCCEEEE
Confidence 3688999999997 66655555542 34899999999877777642 12221 11111 1 24798885
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.- ..+..+-.+..+.+|+||+++....
T Consensus 264 at-----G~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 264 TT-----GNKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CC-----CCHHHHHHHHHhcCCCCcEEEEeCC
Confidence 42 3344333445899999999987663
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF14446 Prok-RING_1: Prokaryotic RING finger family 1 | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.15 Score=33.18 Aligned_cols=26 Identities=23% Similarity=0.686 Sum_probs=21.0
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
-.|+.|+.++...+ ..+.|+.|+..|
T Consensus 6 ~~C~~Cg~~~~~~d-----------DiVvCp~Cgapy 31 (54)
T PF14446_consen 6 CKCPVCGKKFKDGD-----------DIVVCPECGAPY 31 (54)
T ss_pred ccChhhCCcccCCC-----------CEEECCCCCCcc
Confidence 46999999986544 489999998876
|
|
| >PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=90.76 E-value=0.15 Score=28.51 Aligned_cols=22 Identities=27% Similarity=0.841 Sum_probs=11.7
Q ss_pred cccCCCchhhccCCCCccccccccCceeeCC
Q 020307 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRK 92 (328)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~ 92 (328)
.||.|++++....+. -.++|.+
T Consensus 1 ~CP~C~s~l~~~~~e---------v~~~C~N 22 (28)
T PF03119_consen 1 TCPVCGSKLVREEGE---------VDIRCPN 22 (28)
T ss_dssp B-TTT--BEEE-CCT---------TCEEE--
T ss_pred CcCCCCCEeEcCCCC---------EeEECCC
Confidence 499999999865543 4778875
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A. |
| >PF14205 Cys_rich_KTR: Cysteine-rich KTR | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.15 Score=32.88 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=20.0
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
-+.||+|+..-......+..+ ..=.++|++|.+..
T Consensus 4 Wi~CP~CgnKTR~kir~DT~L---kNfPlyCpKCK~Et 38 (55)
T PF14205_consen 4 WILCPICGNKTRLKIREDTVL---KNFPLYCPKCKQET 38 (55)
T ss_pred EEECCCCCCccceeeecCcee---ccccccCCCCCceE
Confidence 357999997532222111111 22378999997765
|
|
| >PRK00432 30S ribosomal protein S27ae; Validated | Back alignment and domain information |
|---|
Probab=90.19 E-value=0.21 Score=32.14 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=20.4
Q ss_pred cCcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
...-.||.|++.+..... +.+.|..||..+
T Consensus 18 ~~~~fCP~Cg~~~m~~~~----------~r~~C~~Cgyt~ 47 (50)
T PRK00432 18 RKNKFCPRCGSGFMAEHL----------DRWHCGKCGYTE 47 (50)
T ss_pred EccCcCcCCCcchheccC----------CcEECCCcCCEE
Confidence 344469999986333221 589999998654
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.34 Score=46.14 Aligned_cols=106 Identities=22% Similarity=0.280 Sum_probs=77.8
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC----CCCCCccc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVD 234 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD 234 (328)
.++-+|||.=|++|.-+...++..+ -.++++-|.+++.++..+++.+..+. ...+.....|+..+ +-....||
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v--~~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV--EDIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc--hhhcccccchHHHHHHhccccccccc
Confidence 4567999999999987777776643 34799999999999998888776432 23344455565332 22356799
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+|-. .=+..+..+|..+.+.++.||.|.++.-.
T Consensus 186 vIDL----DPyGs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 186 VIDL----DPYGSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred eEec----CCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence 9874 33456789999999999999999987643
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.27 Score=44.70 Aligned_cols=80 Identities=21% Similarity=0.213 Sum_probs=61.8
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHH-------HHHHHhcCcCCCCCeEEEEecCCCCCCC
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC-------YDFIKQDNTILTSNLALVRADVCRLPFA 229 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a-------~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 229 (328)
....+|+.|+|-=-|||.++...+..|. -|+|.||+-.+++.. +.++++.+.. ..-+.++.+|+.+.|+.
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vragrg~~~si~aNFkQYg~~-~~fldvl~~D~sn~~~r 280 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRAGRGEDESIKANFKQYGSS-SQFLDVLTADFSNPPLR 280 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcc--eeeccccchheeecccCCCcchhHhHHHhCCc-chhhheeeecccCcchh
Confidence 3456899999999999999999888876 999999999988732 4556655421 33467888999887754
Q ss_pred -CCccceEEec
Q 020307 230 -SGFVDAVHAG 239 (328)
Q Consensus 230 -~~~fD~i~~~ 239 (328)
...||.|+|.
T Consensus 281 sn~~fDaIvcD 291 (421)
T KOG2671|consen 281 SNLKFDAIVCD 291 (421)
T ss_pred hcceeeEEEeC
Confidence 4679999983
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=89.97 E-value=3.2 Score=38.85 Aligned_cols=98 Identities=15% Similarity=0.173 Sum_probs=59.7
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec-----CCC-C-CCC
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-----VCR-L-PFA 229 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-----~~~-l-p~~ 229 (328)
...++.+||-+|+|. |..+..+++.....+|+++|.+++.++.+++. ... .++... +.+ + ...
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~--------Ga~-~~i~~~~~~~~~~~~v~~~~ 265 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM--------GIT-DFINPKDSDKPVHERIREMT 265 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc--------CCc-EEEecccccchHHHHHHHHh
Confidence 345788999999875 66777777764222699999999988888652 111 122111 100 0 011
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCC-cEEEEEEe
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 270 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~ 270 (328)
.+.+|+|+-. ...+ ..+....+.+++| |++++...
T Consensus 266 ~~g~dvvid~-----~G~~-~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 266 GGGVDYSFEC-----AGNV-EVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CCCCCEEEEC-----CCCh-HHHHHHHHhhhcCCCEEEEEcc
Confidence 2258888743 3333 4577778889886 98877553
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=89.76 E-value=3 Score=38.00 Aligned_cols=94 Identities=20% Similarity=0.295 Sum_probs=58.2
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec---CCCCCCCCCccceE
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD---VCRLPFASGFVDAV 236 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d---~~~lp~~~~~fD~i 236 (328)
++.+||..|+|. |..+..+++......+++++.++...+.+++. + . . .++..+ +..+....+.+|++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g---~-~-~vi~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----G---A-D-ETVNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----C---C-C-EEEcCCchhhhhhhccCCCccEE
Confidence 678899888875 66777777764222689999988877765542 1 1 1 111111 11121122358998
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+.... ....++.+.+.|+++|+++...
T Consensus 236 ld~~g------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 236 FEASG------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EECCC------CHHHHHHHHHHHhcCCEEEEEe
Confidence 85432 1235788899999999988764
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) | Back alignment and domain information |
|---|
Probab=89.75 E-value=0.21 Score=30.61 Aligned_cols=24 Identities=33% Similarity=0.771 Sum_probs=18.5
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCC
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCD 94 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~ 94 (328)
-.||.|+.++..... +...|..|+
T Consensus 18 ~~Cp~C~~PL~~~k~----------g~~~Cv~C~ 41 (41)
T PF06677_consen 18 EHCPDCGTPLMRDKD----------GKIYCVSCG 41 (41)
T ss_pred CccCCCCCeeEEecC----------CCEECCCCC
Confidence 459999999987332 578899984
|
It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis []. |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.59 E-value=7 Score=33.46 Aligned_cols=104 Identities=20% Similarity=0.198 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C----
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 228 (328)
++++||-.|++.|. +...+++.+. +|++++.+++..+...+.... ..++.++.+|+.+.. +
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNENKLKRMKKTLSK-----YGNIHYVVGDVSSTESARNVIEKAA 76 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh-----cCCeEEEECCCCCHHHHHHHHHHHH
Confidence 35789999976432 3344445555 999999988776655444332 236788888886532 0
Q ss_pred -CCCccceEEeccccccCC-----------------ChHHHHHHHHhcccCCcEEEEEEec
Q 020307 229 -ASGFVDAVHAGAALHCWP-----------------SPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 229 -~~~~fD~i~~~~vl~h~~-----------------d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
.-+.+|.++......... -+...++.+.+.++++|.+++....
T Consensus 77 ~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~ 137 (238)
T PRK05786 77 KVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM 137 (238)
T ss_pred HHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 013468777655321110 1123456666777788877776643
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.57 E-value=0.73 Score=39.67 Aligned_cols=83 Identities=13% Similarity=0.095 Sum_probs=50.8
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEEe-cCC----CCCCCCCcc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRA-DVC----RLPFASGFV 233 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~-d~~----~lp~~~~~f 233 (328)
.++.++||||.|.--.--.+--+-++.+.+|.|+++..++.|+..+..+ ++ ...+.+..- |-. .+--.++.|
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l--~~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGL--ERAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcch--hhheeEEeccCcccccccccccccee
Confidence 3566899998875432222222212349999999999999999888764 22 223444332 111 111236789
Q ss_pred ceEEecccccc
Q 020307 234 DAVHAGAALHC 244 (328)
Q Consensus 234 D~i~~~~vl~h 244 (328)
|+++|+--+|.
T Consensus 155 d~tlCNPPFh~ 165 (292)
T COG3129 155 DATLCNPPFHD 165 (292)
T ss_pred eeEecCCCcch
Confidence 99999876653
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=89.54 E-value=5 Score=36.33 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=93.7
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---------CCCC
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------FASG 231 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------~~~~ 231 (328)
...|+-+|||-- ++...-..+ ..+|+-+|. |+.++.=++.+++.+........++..|+.+-. |...
T Consensus 93 ~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 568999999853 333332223 356777775 666666666677655332347899999997422 2344
Q ss_pred ccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcch----hhHHHHH----hhhccCCCCCHHHHH
Q 020307 232 FVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSL----TGRVLRE----RILQNYNYLTEEEIE 301 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~l~ 301 (328)
.-=++++-+++.+++.. .++|..|.....||-.++............. ....... .....+......++.
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~ 249 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIE 249 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHH
Confidence 55678888888988754 4789999999999888887764221111110 0000100 011333455689999
Q ss_pred HHHHHCCCeEEEE
Q 020307 302 DLCTSCGLTNYTS 314 (328)
Q Consensus 302 ~ll~~~Gf~~v~~ 314 (328)
.++.+.||.....
T Consensus 250 ~~l~~~g~~~~~~ 262 (297)
T COG3315 250 TWLAERGWRSTLN 262 (297)
T ss_pred HHHHhcCEEEEec
Confidence 9999999987764
|
|
| >smart00659 RPOLCX RNA polymerase subunit CX | Back alignment and domain information |
|---|
Probab=89.53 E-value=0.23 Score=30.98 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=21.9
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCcccc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (328)
.+.|..||..+..... +.++|+.||+.-.
T Consensus 2 ~Y~C~~Cg~~~~~~~~----------~~irC~~CG~rIl 30 (44)
T smart00659 2 IYICGECGRENEIKSK----------DVVRCRECGYRIL 30 (44)
T ss_pred EEECCCCCCEeecCCC----------CceECCCCCceEE
Confidence 3679999997765422 5899999998753
|
present in RNA polymerase I, II and III |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.39 E-value=2.9 Score=39.16 Aligned_cols=95 Identities=17% Similarity=0.147 Sum_probs=54.1
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHH-HHHHHHHHHhcCcCCCCCeEEEE-ecCCCCCCCCCccceE
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENM-LRQCYDFIKQDNTILTSNLALVR-ADVCRLPFASGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~-~~~a~~~~~~~~~~~~~~i~~~~-~d~~~lp~~~~~fD~i 236 (328)
.++.+||-.|+|. |.++..+++.. +.++++++.+++. .+.+++ .+ . . .++. .+...+.-..+.+|+|
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~----lG---a-~-~~i~~~~~~~v~~~~~~~D~v 246 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDR----LG---A-D-SFLVTTDSQKMKEAVGTMDFI 246 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHh----CC---C-c-EEEcCcCHHHHHHhhCCCcEE
Confidence 3678899899875 66777777764 3479999887553 334432 11 1 1 1111 0100000001247877
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+-. ...+ ..+....+.+++||.++....
T Consensus 247 id~-----~G~~-~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 247 IDT-----VSAE-HALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred EEC-----CCcH-HHHHHHHHhhcCCCEEEEEcc
Confidence 743 2223 357788899999999987653
|
|
| >PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=89.13 E-value=0.14 Score=37.06 Aligned_cols=30 Identities=27% Similarity=0.848 Sum_probs=21.6
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
..+.||.|+..-..... .++|.|..|+..+
T Consensus 34 ~ky~Cp~Cgk~~vkR~a---------~GIW~C~~C~~~~ 63 (90)
T PF01780_consen 34 AKYTCPFCGKTSVKRVA---------TGIWKCKKCGKKF 63 (90)
T ss_dssp S-BEESSSSSSEEEEEE---------TTEEEETTTTEEE
T ss_pred CCCcCCCCCCceeEEee---------eEEeecCCCCCEE
Confidence 45789999986544332 2799999998665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D .... |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.96 E-value=0.22 Score=44.35 Aligned_cols=95 Identities=20% Similarity=0.286 Sum_probs=68.2
Q ss_pred CCCeEEEEcCCcCHHHH-HHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 161 QGGLLVDVSCGSGLFSR-KFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~-~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.+..|+|+=.|-|+|+. .+...+ -..|+++|.++..++..++.++.++. ..+..++.+|-.. +-++...|-|...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~V--~~r~~i~~gd~R~-~~~~~~AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANNV--MDRCRITEGDNRN-PKPRLRADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcch--HHHHHhhhccccc-cCccccchheeec
Confidence 45789999999999998 777776 35899999999999999988876543 3444555566543 3346677777753
Q ss_pred cccccCCChHHHHHHHHhcccCCc
Q 020307 240 AALHCWPSPSNAVAEISRILRSGG 263 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG 263 (328)
-+|.-++---.+..+|||.|
T Consensus 270 ----LlPSse~~W~~A~k~Lk~eg 289 (351)
T KOG1227|consen 270 ----LLPSSEQGWPTAIKALKPEG 289 (351)
T ss_pred ----cccccccchHHHHHHhhhcC
Confidence 34555555566777888744
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.76 E-value=0.92 Score=41.88 Aligned_cols=43 Identities=23% Similarity=0.236 Sum_probs=35.7
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 203 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~ 203 (328)
.+-..++|+|.|.|++++.+.-.+ +..|.+||-|....+.|++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 455789999999999999888764 6699999999877777654
|
|
| >PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates | Back alignment and domain information |
|---|
Probab=88.72 E-value=0.3 Score=28.17 Aligned_cols=28 Identities=18% Similarity=0.453 Sum_probs=18.8
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCcccc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (328)
+.|..|+........ ..++|+.||+...
T Consensus 1 Y~C~~Cg~~~~~~~~----------~~irC~~CG~RIl 28 (32)
T PF03604_consen 1 YICGECGAEVELKPG----------DPIRCPECGHRIL 28 (32)
T ss_dssp EBESSSSSSE-BSTS----------STSSBSSSS-SEE
T ss_pred CCCCcCCCeeEcCCC----------CcEECCcCCCeEE
Confidence 358899987765432 4789999988753
|
Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L .... |
| >PF13248 zf-ribbon_3: zinc-ribbon domain | Back alignment and domain information |
|---|
Probab=88.62 E-value=0.19 Score=27.44 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=16.7
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCcc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 96 (328)
..||.|+..+.. +.-.|++||..
T Consensus 3 ~~Cp~Cg~~~~~-------------~~~fC~~CG~~ 25 (26)
T PF13248_consen 3 MFCPNCGAEIDP-------------DAKFCPNCGAK 25 (26)
T ss_pred CCCcccCCcCCc-------------ccccChhhCCC
Confidence 469999985422 46789999864
|
|
| >smart00661 RPOL9 RNA polymerase subunit 9 | Back alignment and domain information |
|---|
Probab=88.47 E-value=0.44 Score=30.67 Aligned_cols=34 Identities=32% Similarity=0.606 Sum_probs=22.3
Q ss_pred cccCCCchhhccCCCCccccccccCceeeCCCCccccCccc
Q 020307 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (328)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g 102 (328)
-||.||+-+....... ...+.|+.|+..+.....
T Consensus 2 FCp~Cg~~l~~~~~~~-------~~~~vC~~Cg~~~~~~~~ 35 (52)
T smart00661 2 FCPKCGNMLIPKEGKE-------KRRFVCRKCGYEEPIEQK 35 (52)
T ss_pred CCCCCCCccccccCCC-------CCEEECCcCCCeEECCCc
Confidence 3999998665543210 137889999987755443
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=88.31 E-value=1.1 Score=42.07 Aligned_cols=101 Identities=17% Similarity=0.148 Sum_probs=54.9
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
++.+|+-+|+|. |..+...+... +.+|+.+|.+++.++.+...+. ..+.....+...+.-.-..+|+|+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g-------~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFG-------GRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcC-------ceeEeccCCHHHHHHHHccCCEEEEc
Confidence 456799999985 55555555442 3489999999877665544321 11111111111111011358999965
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
-.+.--+.|.-+-++..+.+|||++++-..
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 322111223323466667789998776544
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PF14353 CpXC: CpXC protein | Back alignment and domain information |
|---|
Probab=88.29 E-value=0.28 Score=38.42 Aligned_cols=40 Identities=20% Similarity=0.436 Sum_probs=22.9
Q ss_pred ccccCCCchhhccCCCCcc-------ccccc---cCceeeCCCCccccCc
Q 020307 61 FSCPICYEPLIRKGPTGLT-------LGAIY---RSGFKCRKCDKTYSSK 100 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~-------~~~~~---~~~~~C~~C~~~~~~~ 100 (328)
+.||.|+..+.......++ ...+- ...+.|++||+.+...
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLE 51 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecC
Confidence 5799999965332221111 11111 1367899999988543
|
|
| >PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=88.28 E-value=0.19 Score=30.45 Aligned_cols=37 Identities=14% Similarity=0.263 Sum_probs=17.5
Q ss_pred ccccCCCchhhcc-CCCCccccccccCceeeCCCCccc
Q 020307 61 FSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 61 l~CP~C~~~l~~~-~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
+.||.|++.-... .....+.++-..-.+.|.+|++.+
T Consensus 1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~w 38 (39)
T PF01096_consen 1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRW 38 (39)
T ss_dssp S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence 3699999842110 000001122234578899999875
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I .... |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.27 E-value=5.4 Score=36.63 Aligned_cols=96 Identities=13% Similarity=0.108 Sum_probs=57.3
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC---C--CCCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---L--PFASG 231 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~---l--p~~~~ 231 (328)
..++.+||-.|+|. |.++..+++.. +.+ +++++.+++..+.+++. + . -.++..+-.. + -....
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~----G----a-~~~i~~~~~~~~~~~~~~~~~ 227 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAKSL----G----A-MQTFNSREMSAPQIQSVLREL 227 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHc----C----C-ceEecCcccCHHHHHHHhcCC
Confidence 34678999999865 66666677764 334 78999999888776542 1 1 1111111000 0 01123
Q ss_pred ccc-eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 232 FVD-AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 232 ~fD-~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.+| +|+ +.... ...+.+..+.|++||++++...
T Consensus 228 ~~d~~v~-----d~~G~-~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 228 RFDQLIL-----ETAGV-PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CCCeEEE-----ECCCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 566 444 23333 3467888899999999988754
|
|
| >PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr | Back alignment and domain information |
|---|
Probab=88.11 E-value=0.25 Score=31.34 Aligned_cols=41 Identities=17% Similarity=0.368 Sum_probs=24.9
Q ss_pred cccCCCchhhccCCCCccccccccCceeeCC--CCccccCccce
Q 020307 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRK--CDKTYSSKDNY 103 (328)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~--C~~~~~~~~g~ 103 (328)
.||.||+.......... -+.+...+..|.+ ||+.|.....+
T Consensus 1 ~CP~Cg~~a~ir~S~~~-s~~~~~~Y~qC~N~~Cg~tfv~~~~~ 43 (47)
T PF04606_consen 1 RCPHCGSKARIRTSRQL-SPLTRELYCQCTNPECGHTFVANLEF 43 (47)
T ss_pred CcCCCCCeeEEEEchhh-CcceEEEEEEECCCcCCCEEEEEEEE
Confidence 49999996544322111 2233345788988 99998655443
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent |
| >TIGR03655 anti_R_Lar restriction alleviation protein, Lar family | Back alignment and domain information |
|---|
Probab=88.10 E-value=0.37 Score=31.40 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=20.8
Q ss_pred ccccCCCchhh-ccCCCCccccccccCceeeCCCCccccC
Q 020307 61 FSCPICYEPLI-RKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (328)
Q Consensus 61 l~CP~C~~~l~-~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 99 (328)
..||.||+.-. ..... ...-..+.+.|.+|+...+.
T Consensus 2 kPCPfCGg~~~~~~~~~---~~~~~~~~~~C~~Cga~~~~ 38 (53)
T TIGR03655 2 KPCPFCGGADVYLRRGF---DPLDLSHYFECSTCGASGPV 38 (53)
T ss_pred CCCCCCCCcceeeEecc---CCCCCEEEEECCCCCCCccc
Confidence 56999999644 21100 11112345689999887654
|
Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes. |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=88.06 E-value=1.2 Score=39.51 Aligned_cols=75 Identities=16% Similarity=0.236 Sum_probs=41.8
Q ss_pred HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHH
Q 020307 175 FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAE 254 (328)
Q Consensus 175 ~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~ 254 (328)
+++.|.+.++..+|+|+|.++..++.|.+. .-+.-...+.+.+ ..+|+|+..--+.. ...++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~---------g~~~~~~~~~~~~----~~~DlvvlavP~~~---~~~~l~~ 64 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALEL---------GIIDEASTDIEAV----EDADLVVLAVPVSA---IEDVLEE 64 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT---------TSSSEEESHHHHG----GCCSEEEE-S-HHH---HHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC---------CCeeeccCCHhHh----cCCCEEEEcCCHHH---HHHHHHH
Confidence 457788888888999999999998888652 1222222221111 24688887543222 2344555
Q ss_pred HHhcccCCcEE
Q 020307 255 ISRILRSGGVF 265 (328)
Q Consensus 255 ~~r~LkpgG~l 265 (328)
+...+++|+.+
T Consensus 65 ~~~~~~~~~iv 75 (258)
T PF02153_consen 65 IAPYLKPGAIV 75 (258)
T ss_dssp HHCGS-TTSEE
T ss_pred hhhhcCCCcEE
Confidence 55555555444
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300 | Back alignment and domain information |
|---|
Probab=88.04 E-value=0.31 Score=37.56 Aligned_cols=31 Identities=6% Similarity=0.023 Sum_probs=23.1
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCccccCc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 100 (328)
.-.||.||..+.-.+. ....|+.||..|+..
T Consensus 9 Kr~Cp~cg~kFYDLnk----------~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFYDLNR----------RPAVSPYTGEQFPPE 39 (129)
T ss_pred cccCCCcCccccccCC----------CCccCCCcCCccCcc
Confidence 3469999998854432 478999999988543
|
Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=88.03 E-value=1.2 Score=39.08 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=59.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHH---h-C-CCceEEEEeCCH--------------------------HHHHHHHHHHHhc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAK---S-G-TYSGVVALDFSE--------------------------NMLRQCYDFIKQD 208 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~---~-~-~~~~v~g~D~s~--------------------------~~~~~a~~~~~~~ 208 (328)
.-.+.|+|+||-.|..+..++. . + +..++++.|.-+ ...+..++++...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 3356899999999986654432 2 1 345688888311 1344444555444
Q ss_pred CcCCCCCeEEEEecCCC-CC-CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 209 NTILTSNLALVRADVCR-LP-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 209 ~~~~~~~i~~~~~d~~~-lp-~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++. ..++.++.|.+.+ +| .+...+-++....=+. ......|..++..|.|||++++-+++
T Consensus 153 gl~-~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY--esT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 153 GLL-DDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY--ESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp TTS-STTEEEEES-HHHHCCC-TT--EEEEEE---SH--HHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred CCC-cccEEEECCcchhhhccCCCccEEEEEEeccch--HHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 431 4689999999843 44 1223333333221111 12357899999999999999996654
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.93 E-value=5.9 Score=36.55 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=59.5
Q ss_pred ccCCCeEEEEcC-C-cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe----cCCC-C-CCCC
Q 020307 159 SAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA----DVCR-L-PFAS 230 (328)
Q Consensus 159 ~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~----d~~~-l-p~~~ 230 (328)
..++.+||-.|+ | .|.++..+++.. +.++++++.+++..+.+++.+. .. .++.. ++.+ + ....
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lG-------a~-~vi~~~~~~~~~~~i~~~~~ 226 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLG-------FD-EAFNYKEEPDLDAALKRYFP 226 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcC-------CC-EEEECCCcccHHHHHHHHCC
Confidence 457889999997 3 577888888774 4589999999887776653221 11 11111 1100 0 0112
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+.+|+|+-.- . ...+....+.|++||++++.-
T Consensus 227 ~gvD~v~d~v-----G--~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 227 EGIDIYFDNV-----G--GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CCcEEEEECC-----C--HHHHHHHHHHhccCCEEEEEC
Confidence 3588887432 2 246788899999999988754
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=87.93 E-value=5.6 Score=37.50 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=59.6
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe---cCCC-CC--CCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA---DVCR-LP--FASG 231 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~---d~~~-lp--~~~~ 231 (328)
..++.+||-.|+|. |.++..+++...-..++.+|.+++.++.+++. ... .+... ++.. +. ....
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~--------Ga~-~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF--------GCE-TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc--------CCe-EEecCCcccHHHHHHHHcCCC
Confidence 34677888888875 66666677663222466778888888777762 111 11111 1100 00 1123
Q ss_pred ccceEEecccccc--------CCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 232 FVDAVHAGAALHC--------WPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 232 ~fD~i~~~~vl~h--------~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.+|+|+-.-.-.. -.++...+++..+.+++||++++.-.
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 5888874332110 01223578999999999999988664
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=87.85 E-value=7.7 Score=35.68 Aligned_cols=97 Identities=23% Similarity=0.332 Sum_probs=57.9
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC--CCC----C-C-C
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL----P-F-A 229 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~l----p-~-~ 229 (328)
..++.+||-.|+|. |..+..+++.. +.+++++|.+++.++.+++. .....+...+. .++ . + .
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~--------Ga~~~i~~~~~~~~~~~~~~~~~t~ 234 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGF--------GADLTLNPKDKSAREVKKLIKAFAK 234 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh--------CCceEecCccccHHHHHHHHHhhcc
Confidence 35688999999966 66777777764 34899999999988877652 11111110000 000 0 0 1
Q ss_pred CCccc----eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 230 SGFVD----AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ~~~fD----~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
...+| +|+ +....+ ..++...+.|++||++++...
T Consensus 235 ~~g~d~~~d~v~-----d~~g~~-~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 235 ARGLRSTGWKIF-----ECSGSK-PGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred cCCCCCCcCEEE-----ECCCCh-HHHHHHHHHHhcCCeEEEECc
Confidence 12344 333 333333 356778889999999988654
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=87.72 E-value=6.2 Score=35.74 Aligned_cols=95 Identities=19% Similarity=0.152 Sum_probs=58.0
Q ss_pred ccCCCeEEEEcCC-cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCccceE
Q 020307 159 SAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAV 236 (328)
Q Consensus 159 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~i 236 (328)
..++.+||-.|+| .|..+..+++.. +.++++++.+++..+.+++. ... .++...-.... ...+.+|++
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~--------g~~-~~~~~~~~~~~~~~~~~~d~v 229 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKL--------GAD-EVVDSGAELDEQAAAGGADVI 229 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHh--------CCc-EEeccCCcchHHhccCCCCEE
Confidence 4567889999987 466666666663 34899999999887777442 111 11111100000 012358888
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+.... . ...+.++.+.|+++|.++...
T Consensus 230 i~~~~-----~-~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 230 LVTVV-----S-GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EECCC-----c-HHHHHHHHHhcccCCEEEEEC
Confidence 75321 1 235788899999999988765
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length | Back alignment and domain information |
|---|
Probab=87.69 E-value=0.29 Score=33.68 Aligned_cols=26 Identities=35% Similarity=0.945 Sum_probs=15.4
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
+.||.|++++...+ +.++|..|+..|
T Consensus 2 ~~CP~C~~~L~~~~-----------~~~~C~~C~~~~ 27 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-----------GHYHCEACQKDY 27 (70)
T ss_dssp -B-SSS-SBEEEET-----------TEEEETTT--EE
T ss_pred CcCCCCCCccEEeC-----------CEEECccccccc
Confidence 46999999886654 477788887655
|
Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A. |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=87.64 E-value=6.7 Score=35.58 Aligned_cols=95 Identities=11% Similarity=-0.014 Sum_probs=58.9
Q ss_pred cccCCCeEEEEcC--CcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec----CCC-C-CCC
Q 020307 158 KSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD----VCR-L-PFA 229 (328)
Q Consensus 158 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d----~~~-l-p~~ 229 (328)
...++.+||=.|. |.|.++..+++.. +.++++++.+++..+.+++. + .. .++..+ ... . ...
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~l----G----a~-~vi~~~~~~~~~~~~~~~~ 204 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKL----G----FD-VAFNYKTVKSLEETLKKAS 204 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----C----CC-EEEeccccccHHHHHHHhC
Confidence 3457889998884 3577888888774 44899999998877777542 1 11 111111 110 0 011
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.+.+|+|+-. +.. ..+....+.|+++|+++...
T Consensus 205 ~~gvdvv~d~-----~G~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 205 PDGYDCYFDN-----VGG--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CCCeEEEEEC-----CCH--HHHHHHHHHhCcCcEEEEec
Confidence 2358888742 222 34688899999999998754
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=87.55 E-value=6 Score=35.84 Aligned_cols=123 Identities=17% Similarity=0.154 Sum_probs=75.2
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCCCccceEEecc
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVHAGA 240 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~i~~~~ 240 (328)
+++|+=||-|.+..-+...| ...+.++|+++...+.-+.++ + ....+|+.++. ++. .+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~--------~--~~~~~Di~~~~~~~l~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANF--------P--EVICGDITEIDPSDLPK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHH--------T--EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhcc--------c--ccccccccccccccccc-cceEEEecc
Confidence 68999999999999999998 346899999999888877763 2 67888987765 333 599998753
Q ss_pred ccc---------cCCChHH-H---HHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHC
Q 020307 241 ALH---------CWPSPSN-A---VAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 241 vl~---------h~~d~~~-~---l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 307 (328)
-.. .+.|+.. + +-++.+.++|.- ++.+.... .... ...-..+.+.+.|++.
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~--~~~ENV~~--l~~~------------~~~~~~~~i~~~l~~l 133 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKY--FLLENVPG--LLSS------------KNGEVFKEILEELEEL 133 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SE--EEEEEEGG--GGTG------------GGHHHHHHHHHHHHHT
T ss_pred CCceEeccccccccccccchhhHHHHHHHhhccceE--EEecccce--eecc------------cccccccccccccccc
Confidence 222 2233321 2 333444567743 33343221 0000 0001235788889999
Q ss_pred CCeEEEE
Q 020307 308 GLTNYTS 314 (328)
Q Consensus 308 Gf~~v~~ 314 (328)
|+.+...
T Consensus 134 GY~v~~~ 140 (335)
T PF00145_consen 134 GYNVQWR 140 (335)
T ss_dssp TEEEEEE
T ss_pred ceeehhc
Confidence 9976654
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.51 E-value=12 Score=32.97 Aligned_cols=77 Identities=21% Similarity=0.340 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C----
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 228 (328)
.++++|-.|++.|- ++..|++.|. +|+.++.+++.++...+.+.... ..++.++.+|+.+.. +
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES---NVDVSYIVADLTKREDLERTVKELK 81 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc---CCceEEEEecCCCHHHHHHHHHHHH
Confidence 46788988877653 5566666665 89999999887776666554321 346788888986642 1
Q ss_pred CCCccceEEecccc
Q 020307 229 ASGFVDAVHAGAAL 242 (328)
Q Consensus 229 ~~~~fD~i~~~~vl 242 (328)
.-+.+|+++.+...
T Consensus 82 ~~g~iD~lv~nag~ 95 (263)
T PRK08339 82 NIGEPDIFFFSTGG 95 (263)
T ss_pred hhCCCcEEEECCCC
Confidence 11468988876554
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=87.47 E-value=6.8 Score=35.96 Aligned_cols=96 Identities=16% Similarity=0.211 Sum_probs=58.5
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-----C-CCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P-FASG 231 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p-~~~~ 231 (328)
..++.+||-.|+|. |..+..+++......++++|.+++..+.+++. .. ..++..+-..+ . ....
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~--------g~-~~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY--------GA-TDIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc--------CC-ceEecCCCCCHHHHHHHHhCCC
Confidence 45678898888764 66667777764223599999998877776652 11 11111110110 0 1234
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.+|+|+.... . ...+.++.+.|+++|+++...
T Consensus 235 ~~d~vld~~g-----~-~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 235 GVDAVIIAGG-----G-QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCcEEEECCC-----C-HHHHHHHHHHhhcCCEEEEec
Confidence 5888874322 2 245788999999999988654
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=87.29 E-value=11 Score=28.41 Aligned_cols=86 Identities=16% Similarity=0.102 Sum_probs=53.1
Q ss_pred CCcCHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----CCCCccceEEeccccc
Q 020307 170 CGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAVHAGAALH 243 (328)
Q Consensus 170 cG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~i~~~~vl~ 243 (328)
||.|.++..+++.. ...+|+.+|.+++.++.++.. .+.++.+|..+.. ..-...|.|++..-
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----------GVEVIYGDATDPEVLERAGIEKADAVVILTD-- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----------TSEEEES-TTSHHHHHHTTGGCESEEEEESS--
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----------ccccccccchhhhHHhhcCccccCEEEEccC--
Confidence 45556666655431 123899999999998888752 4779999987643 12246777776432
Q ss_pred cCCChH--HHHHHHHhcccCCcEEEEEEe
Q 020307 244 CWPSPS--NAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 244 h~~d~~--~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+.. ..+....+.+-|...++....
T Consensus 72 ---~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 72 ---DDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp ---SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred ---CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 333 234455566777778777663
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF13453 zf-TFIIB: Transcription factor zinc-finger | Back alignment and domain information |
|---|
Probab=87.16 E-value=0.19 Score=30.85 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=21.3
Q ss_pred cccCCCchhhccCCCCccccccccCceeeCCCCccccCcc
Q 020307 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (328)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~ 101 (328)
.||.|+..+..... +. .....|++|+-.+....
T Consensus 1 ~CP~C~~~l~~~~~-----~~--~~id~C~~C~G~W~d~~ 33 (41)
T PF13453_consen 1 KCPRCGTELEPVRL-----GD--VEIDVCPSCGGIWFDAG 33 (41)
T ss_pred CcCCCCcccceEEE-----CC--EEEEECCCCCeEEccHH
Confidence 49999997644322 11 24678999987765443
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.12 E-value=3.1 Score=37.31 Aligned_cols=90 Identities=16% Similarity=0.197 Sum_probs=57.2
Q ss_pred CeEEEEcCCc--CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe-cCCCCCCCCCccceEEec
Q 020307 163 GLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 163 ~~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD~i~~~ 239 (328)
.+|+=+|.|- |.+.+.+.+.++...++|.|.+...++.+... ++..... +.... .....|+|+..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----------gv~d~~~~~~~~~--~~~~aD~Viva 71 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----------GVIDELTVAGLAE--AAAEADLVIVA 71 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----------Ccccccccchhhh--hcccCCEEEEe
Confidence 4788888885 56788888888877789999998888777642 2222211 11011 23457999875
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVG 267 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i 267 (328)
--+. ....+++++...||+|..+.=
T Consensus 72 vPi~---~~~~~l~~l~~~l~~g~iv~D 96 (279)
T COG0287 72 VPIE---ATEEVLKELAPHLKKGAIVTD 96 (279)
T ss_pred ccHH---HHHHHHHHhcccCCCCCEEEe
Confidence 4322 235667777777777765543
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.94 E-value=7.2 Score=36.10 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=54.5
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
.++.+||-.|+|. |.++..+++.. +.++++++.+++..+.+.+.+ + . ...+...+...+.-....+|+|+-
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~---G---a-~~~i~~~~~~~~~~~~~~~D~vid 250 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHL---G---A-DDYLVSSDAAEMQEAADSLDYIID 250 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhc---C---C-cEEecCCChHHHHHhcCCCcEEEE
Confidence 4677888888764 66667777764 347888888776555544322 1 1 111111110011000124777763
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
. +.. ...+....+.|+++|+++....
T Consensus 251 ~-----~g~-~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 251 T-----VPV-FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred C-----CCc-hHHHHHHHHHhccCCEEEEECC
Confidence 2 222 2357788899999999887653
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=86.80 E-value=4.6 Score=37.81 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=57.1
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe-----cCCC-CC-CCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-----DVCR-LP-FAS 230 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-----d~~~-lp-~~~ 230 (328)
..++.+||-.|+|. |.++..+++......++++|.+++..+.+++. + .. .++.. +... +. ...
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----G----a~-~~i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----G----VT-DFINPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C----Cc-EEEcccccchHHHHHHHHHhC
Confidence 45688999999865 66666677664223588999998887777542 1 11 11111 1100 00 112
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCC-cEEEEEE
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTT 269 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~ 269 (328)
+.+|+|+-. ...+ ..+....+.+++| |++++.-
T Consensus 262 ~g~d~vid~-----~G~~-~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 262 GGADYSFEC-----VGDT-GIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCCEEEEC-----CCCh-HHHHHHHHhhccCCCEEEEEC
Confidence 257877743 2233 3467788889998 9987654
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.62 E-value=7 Score=35.85 Aligned_cols=100 Identities=19% Similarity=0.243 Sum_probs=64.5
Q ss_pred ccccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec----CCC--CCCC
Q 020307 157 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD----VCR--LPFA 229 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d----~~~--lp~~ 229 (328)
.+..++.+|.-+|||. |.....-++...-.+++++|+++.-++.|++. .-.+++... +.+ ....
T Consensus 181 a~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f---------GAT~~vn~~~~~~vv~~i~~~T 251 (366)
T COG1062 181 AKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF---------GATHFVNPKEVDDVVEAIVELT 251 (366)
T ss_pred ccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc---------CCceeecchhhhhHHHHHHHhc
Confidence 4567899999999986 66666656554355899999999999999873 333333321 100 0112
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++-.|.+ ++...+.. .++.....+.++|..++.-..
T Consensus 252 ~gG~d~~-----~e~~G~~~-~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 252 DGGADYA-----FECVGNVE-VMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred CCCCCEE-----EEccCCHH-HHHHHHHHHhcCCeEEEEecC
Confidence 3345555 34444555 678888888889988776543
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.53 E-value=7.5 Score=34.05 Aligned_cols=73 Identities=15% Similarity=0.164 Sum_probs=46.2
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC---
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 229 (328)
.++++|-.|++.|- ++..|++.|. +|+.+|.+++.++...+.+ ..++.++.+|+.+.. +.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASL-------GERARFIATDITDDAAIERAVATVV 75 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCeeEEEEecCCCHHHHHHHHHHHH
Confidence 45688988865542 4455556665 8999999876555444322 235778888986542 11
Q ss_pred --CCccceEEecccc
Q 020307 230 --SGFVDAVHAGAAL 242 (328)
Q Consensus 230 --~~~fD~i~~~~vl 242 (328)
-+..|+++.+...
T Consensus 76 ~~~g~id~lv~~ag~ 90 (261)
T PRK08265 76 ARFGRVDILVNLACT 90 (261)
T ss_pred HHhCCCCEEEECCCC
Confidence 1467988876543
|
|
| >PTZ00255 60S ribosomal protein L37a; Provisional | Back alignment and domain information |
|---|
Probab=86.38 E-value=0.35 Score=35.09 Aligned_cols=30 Identities=23% Similarity=0.712 Sum_probs=22.1
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
..+.||.|+..-..... .++|.|..|+..+
T Consensus 35 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~ 64 (90)
T PTZ00255 35 AKYFCPFCGKHAVKRQA---------VGIWRCKGCKKTV 64 (90)
T ss_pred CCccCCCCCCCceeeee---------eEEEEcCCCCCEE
Confidence 56789999875443332 2799999998776
|
|
| >KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7 | Back alignment and domain information |
|---|
Probab=86.33 E-value=0.6 Score=30.60 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=25.7
Q ss_pred CcccCcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
......+.|-.|++....... ..++|..||+..
T Consensus 15 r~~~miYiCgdC~~en~lk~~----------D~irCReCG~RI 47 (62)
T KOG3507|consen 15 RTATMIYICGDCGQENTLKRG----------DVIRCRECGYRI 47 (62)
T ss_pred CcccEEEEeccccccccccCC----------CcEehhhcchHH
Confidence 335578999999998766543 589999998865
|
0 [Transcription] |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=86.30 E-value=1.9 Score=38.11 Aligned_cols=65 Identities=23% Similarity=0.318 Sum_probs=43.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhC-----CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 227 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 227 (328)
.+...++|+|||.|.++..++... +...++.||-...-.+. ..++..... .+.+.-+..|+.++.
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~-D~~~~~~~~--~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKA-DNKIRKDES--EPKFERLRIDIKDLD 86 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccc-hhhhhccCC--CCceEEEEEEeeccc
Confidence 356699999999999999999876 45689999986544332 333332210 135666677776654
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=86.10 E-value=6.9 Score=34.40 Aligned_cols=95 Identities=19% Similarity=0.185 Sum_probs=58.1
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
...++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++.- . ...+ ....-.. .....+|+
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g-~-----~~~~--~~~~~~~--~~~~~~d~ 162 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALG-P-----ADPV--AADTADE--IGGRGADV 162 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcC-C-----Cccc--cccchhh--hcCCCCCE
Confidence 345678888888865 66666666663 336 999999988877666531 0 0011 1000000 12346898
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
|+.... ....+.+..+.|+++|.++...
T Consensus 163 vl~~~~------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 163 VIEASG------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEccC------ChHHHHHHHHHhcCCcEEEEEe
Confidence 885321 1335788899999999988654
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=86.06 E-value=1.2 Score=41.72 Aligned_cols=62 Identities=10% Similarity=0.105 Sum_probs=51.2
Q ss_pred CCCeEEEEecCCCCC--CCCCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCC
Q 020307 213 TSNLALVRADVCRLP--FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT 274 (328)
Q Consensus 213 ~~~i~~~~~d~~~lp--~~~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~ 274 (328)
..++.++.+++.+.- .+++++|.++.....+++++. ...++++.+.++|||+++.-.....+
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 578999999986532 357899999999999999754 47899999999999999998866543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=86.00 E-value=7.5 Score=35.22 Aligned_cols=96 Identities=15% Similarity=0.115 Sum_probs=58.9
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC----CCCCCc
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGF 232 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~ 232 (328)
..++.+||.+|+|. |..+..+++.. +.+ ++.++.+++..+.+++. ... .++..+-... ....+.
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~--------g~~-~~~~~~~~~~~~~~~~~~~~ 226 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKL--------GAT-ETVDPSREDPEAQKEDNPYG 226 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHh--------CCe-EEecCCCCCHHHHHHhcCCC
Confidence 45678999998653 56666666664 335 88999998887776442 111 1221111110 012356
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+|+++.... ....+.++.+.|+++|+++....
T Consensus 227 vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 227 FDVVIEATG------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CcEEEECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence 899985421 13567888999999999887653
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PF14740 DUF4471: Domain of unknown function (DUF4471) | Back alignment and domain information |
|---|
Probab=85.93 E-value=1.8 Score=38.82 Aligned_cols=67 Identities=19% Similarity=0.304 Sum_probs=44.6
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCC
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL 309 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf 309 (328)
.+.||+|+.....-|+-.|. +.++++|+|+|++.+... ...+-.+.... -.+.+.++++++||
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKf---mvdLrKEq~~~---------F~~kv~eLA~~aG~ 282 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKF---MVDLRKEQLQE---------FVKKVKELAKAAGF 282 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchh---heeCCHHHHHH---------HHHHHHHHHHHCCC
Confidence 46799999887766665554 777899999999987421 11111111111 13578999999999
Q ss_pred eEEE
Q 020307 310 TNYT 313 (328)
Q Consensus 310 ~~v~ 313 (328)
+...
T Consensus 283 ~p~~ 286 (289)
T PF14740_consen 283 KPVT 286 (289)
T ss_pred cccc
Confidence 8764
|
|
| >TIGR00280 L37a ribosomal protein L37a | Back alignment and domain information |
|---|
Probab=85.84 E-value=0.34 Score=35.16 Aligned_cols=30 Identities=27% Similarity=0.881 Sum_probs=21.9
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
..+.||.|+..-..... .++|.|..|+..+
T Consensus 34 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~ 63 (91)
T TIGR00280 34 AKYVCPFCGKKTVKRGS---------TGIWTCRKCGAKF 63 (91)
T ss_pred cCccCCCCCCCceEEEe---------eEEEEcCCCCCEE
Confidence 56789999875433332 2799999998776
|
This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a. |
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.81 E-value=15 Score=33.34 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=52.3
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 227 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------- 227 (328)
.++++|-.|++.|- .+..|++.+. +|+.++.+.+..+.+.+.+..... ..++.++.+|+.+..
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~--~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVP--DAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCC--CCceEEEEecCCCHHHHHHHHHHHH
Confidence 46788988877653 4555666665 899999888777666665543211 246788899986642
Q ss_pred CCCCccceEEecccc
Q 020307 228 FASGFVDAVHAGAAL 242 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl 242 (328)
-..+..|+++.+..+
T Consensus 89 ~~~~~iD~li~nAG~ 103 (313)
T PRK05854 89 AEGRPIHLLINNAGV 103 (313)
T ss_pred HhCCCccEEEECCcc
Confidence 112568999987654
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.76 E-value=11 Score=34.55 Aligned_cols=76 Identities=25% Similarity=0.253 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-C--------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F-------- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~-------- 228 (328)
++++||-.|++.|. ++..|++.+. +|+.++.+++.++...+.+... ..++.++.+|+.+.. .
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~----g~~~~~v~~Dv~d~~~v~~~~~~~~ 80 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAA----GGEALAVVADVADAEAVQAAADRAE 80 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHc----CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 45688888865542 3445556665 8999999988777666655543 346778888986532 0
Q ss_pred -CCCccceEEecccc
Q 020307 229 -ASGFVDAVHAGAAL 242 (328)
Q Consensus 229 -~~~~fD~i~~~~vl 242 (328)
.-+.+|+++.+...
T Consensus 81 ~~~g~iD~lInnAg~ 95 (334)
T PRK07109 81 EELGPIDTWVNNAMV 95 (334)
T ss_pred HHCCCCCEEEECCCc
Confidence 12468999876554
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.68 E-value=15 Score=31.61 Aligned_cols=103 Identities=17% Similarity=0.103 Sum_probs=57.2
Q ss_pred CCCeEEEEcCCcC--H-HHHHHHHhCCCceEEEEeCCH-HHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC--
Q 020307 161 QGGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSE-NMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~g~D~s~-~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 229 (328)
+++++|-.|+..| . +...|++.+. +|++++.+. ...+...+.+... ..++.++.+|+.+.. +.
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~ 78 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAA----GGRASAVGADLTDEESVAALMDTA 78 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHH
Confidence 4568998986443 2 3344445554 888887653 2333333333322 335778888886532 00
Q ss_pred ---CCccceEEeccccccCC-------------ChHHHHHHHHhcccCCcEEEEEE
Q 020307 230 ---SGFVDAVHAGAALHCWP-------------SPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 230 ---~~~fD~i~~~~vl~h~~-------------d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
-+.+|+++.+....... -+..+++.+.+.++.+|.+++..
T Consensus 79 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 79 REEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred HHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 13578887654332110 12356777777777677766554
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=85.58 E-value=12 Score=34.47 Aligned_cols=123 Identities=18% Similarity=0.168 Sum_probs=81.3
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC---CCccceEEe
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAVHA 238 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~i~~ 238 (328)
..+++|+=||-|.+..-+...+ ..-+.++|+++..++.-+.+. +...+...|+..+... ...+|+++.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~--------~~~~~~~~di~~~~~~~~~~~~~Dvlig 73 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANF--------PHGDIILGDIKELDGEALRKSDVDVLIG 73 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhC--------CCCceeechHhhcChhhccccCCCEEEe
Confidence 3589999999999999998887 446899999999888777653 3355666777554321 117899997
Q ss_pred ccccccC---------CChH----HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHH
Q 020307 239 GAALHCW---------PSPS----NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 239 ~~vl~h~---------~d~~----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 305 (328)
..-...+ .|+. -.+.++...++| .+++.+.... + . .+ ..-+.+.+.+.|+
T Consensus 74 GpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~g-----l-~--------~~-~~~~~~~i~~~L~ 136 (328)
T COG0270 74 GPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKG-----L-L--------SS-KGQTFDEIKKELE 136 (328)
T ss_pred CCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCch-----H-H--------hc-CchHHHHHHHHHH
Confidence 5433332 3443 234566666778 5555553221 1 1 11 3346788999999
Q ss_pred HCCCe
Q 020307 306 SCGLT 310 (328)
Q Consensus 306 ~~Gf~ 310 (328)
+.||.
T Consensus 137 ~~GY~ 141 (328)
T COG0270 137 ELGYG 141 (328)
T ss_pred HcCCc
Confidence 99997
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.49 E-value=18 Score=33.18 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=58.1
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEE--EecCC-CC-C-CCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALV--RADVC-RL-P-FASG 231 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~--~~d~~-~l-p-~~~~ 231 (328)
..++.+||-.|+|. |..+..+++.. +. .+++++.+++..+.+++. + ....+. ..++. .+ . ...+
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~~----g----a~~~i~~~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELAEEL----G----ATIVLDPTEVDVVAEVRKLTGGG 240 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh----C----CCEEECCCccCHHHHHHHHhCCC
Confidence 34678888888653 55666666664 34 789999988887777542 1 111110 01110 00 0 1123
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
.+|+|+-... . ...++.+.+.|+++|+++.....
T Consensus 241 ~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~~ 274 (351)
T cd08233 241 GVDVSFDCAG-----V-QATLDTAIDALRPRGTAVNVAIW 274 (351)
T ss_pred CCCEEEECCC-----C-HHHHHHHHHhccCCCEEEEEccC
Confidence 4888885332 1 23578889999999998876543
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=85.43 E-value=0.89 Score=37.90 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=57.5
Q ss_pred eEEEEcCCc-C-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh-------cCcC-------CCCCeEEEEecCCCCC
Q 020307 164 LLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DNTI-------LTSNLALVRADVCRLP 227 (328)
Q Consensus 164 ~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-------~~~~-------~~~~i~~~~~d~~~lp 227 (328)
+|--||+|+ | .++..++..|. +|+.+|.+++.++.+++++.. .+.. ...++. ...|++.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH-
Confidence 366788876 4 24555566665 999999999999998877654 1100 011233 23344332
Q ss_pred CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 228 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
. ..|+|+-.- .|.++-...+++++.+.++|+..|...+...
T Consensus 77 --~-~adlViEai-~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 77 --V-DADLVIEAI-PEDLELKQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp --C-TESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred --h-hhheehhhc-cccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 1 456665322 2222223578999999999999888877543
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.41 E-value=0.64 Score=41.81 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=36.7
Q ss_pred CeEEEEecCCCC--CCCCCccceEEec--ccc--c------cC------CChHHHHHHHHhcccCCcEEEEEE
Q 020307 215 NLALVRADVCRL--PFASGFVDAVHAG--AAL--H------CW------PSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 215 ~i~~~~~d~~~l--p~~~~~fD~i~~~--~vl--~------h~------~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+..++++|..+. .+++++||+|++. +-+ . .+ .-....+.++.++|||||.+++..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 446777887553 3557789999984 111 0 00 001468899999999999999854
|
|
| >smart00440 ZnF_C2C2 C2C2 Zinc finger | Back alignment and domain information |
|---|
Probab=85.40 E-value=0.46 Score=28.95 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=19.5
Q ss_pred cccCCCchhhcc-CCCCccccccccCceeeCCCCccc
Q 020307 62 SCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 62 ~CP~C~~~l~~~-~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
.||.|+..-... ....-+.++-+.-.+.|.+|++.+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w 38 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRW 38 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEe
Confidence 699998842110 000001122233578999999876
|
Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases. |
| >PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function | Back alignment and domain information |
|---|
Probab=85.37 E-value=0.47 Score=38.19 Aligned_cols=40 Identities=25% Similarity=0.510 Sum_probs=24.7
Q ss_pred CcccccCCCchhhccCCCCc------cccccccCceeeCCCCcccc
Q 020307 59 DLFSCPICYEPLIRKGPTGL------TLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~------~~~~~~~~~~~C~~C~~~~~ 98 (328)
..-+|+.|++.+.......+ .....+...++|+.||..|-
T Consensus 90 ~~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiyW 135 (147)
T PF01927_consen 90 IFSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIYW 135 (147)
T ss_pred CCCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEec
Confidence 35789999997754332211 01111334789999998873
|
The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges. |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.13 E-value=12 Score=34.21 Aligned_cols=95 Identities=19% Similarity=0.225 Sum_probs=58.9
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec----------CCC
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD----------VCR 225 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d----------~~~ 225 (328)
...++.+||-.|+|. |..+..+++.. +.+ ++.++.+++..+.+++. + .. .++..+ +..
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~~----g---~~--~vi~~~~~~~~~~~~~~~~ 228 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKEL----G---AT--HTVNVRTEDTPESAEKIAE 228 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHc----C---Cc--EEeccccccchhHHHHHHH
Confidence 345678888888765 66777777764 335 89998888777666542 1 11 111111 111
Q ss_pred CCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 226 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 226 lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
. .....+|+|+-... ....+.+..+.|+++|+++...
T Consensus 229 ~-~~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 229 L-LGGKGPDVVIECTG------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred H-hCCCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1 22345899985432 1235788899999999988754
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.09 E-value=12 Score=32.67 Aligned_cols=77 Identities=12% Similarity=0.139 Sum_probs=51.1
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC---------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--------- 228 (328)
++.++|-.|++.|- ++..++++|. +|++++.+++.++...+.+.. ..++.++.+|+.+..-
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~d~~~~~~~~~~~~ 76 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY-----PGRHRWVVADLTSEAGREAVLARAR 76 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc-----CCceEEEEccCCCHHHHHHHHHHHH
Confidence 35688888876542 4555666665 899999998877666554421 4478888889866420
Q ss_pred CCCccceEEecccccc
Q 020307 229 ASGFVDAVHAGAALHC 244 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h 244 (328)
..+..|+++......+
T Consensus 77 ~~~~id~lv~~ag~~~ 92 (263)
T PRK09072 77 EMGGINVLINNAGVNH 92 (263)
T ss_pred hcCCCCEEEECCCCCC
Confidence 0246799998765543
|
|
| >COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.95 E-value=0.55 Score=38.94 Aligned_cols=37 Identities=14% Similarity=0.306 Sum_probs=21.6
Q ss_pred CcccccCCCchhh-ccCCCCccccccccCceeeCCCCccccC
Q 020307 59 DLFSCPICYEPLI-RKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (328)
Q Consensus 59 ~~l~CP~C~~~l~-~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 99 (328)
-.+.||.|++.-. ...-. ....+-.++|.+||+.++.
T Consensus 5 iy~~Cp~Cg~eev~hEVik----~~g~~~lvrC~eCG~V~~~ 42 (201)
T COG1326 5 IYIECPSCGSEEVSHEVIK----ERGREPLVRCEECGTVHPA 42 (201)
T ss_pred EEEECCCCCcchhhHHHHH----hcCCceEEEccCCCcEeec
Confidence 3578999994211 10000 0011248999999999954
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=84.87 E-value=10 Score=34.20 Aligned_cols=94 Identities=13% Similarity=0.065 Sum_probs=58.5
Q ss_pred ccCCCeEEEEcC--CcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-----CCCCC
Q 020307 159 SAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASG 231 (328)
Q Consensus 159 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~ 231 (328)
..++.+||-.|. |.|.++..+++.. +.++++++.+++..+.+++. + .. .++...-..+ ....+
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~----G----a~-~vi~~~~~~~~~~v~~~~~~ 210 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKEL----G----FD-AVFNYKTVSLEEALKEAAPD 210 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----C----CC-EEEeCCCccHHHHHHHHCCC
Confidence 456789988884 3477777777764 45899999988877777652 1 11 1111111110 01124
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.+|+|+-.- . ...+.+..+.|+++|+++...
T Consensus 211 gvd~vld~~-----g--~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 211 GIDCYFDNV-----G--GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred CcEEEEECC-----C--HHHHHHHHHhhccCCEEEEEc
Confidence 588887432 2 245788999999999988653
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.87 E-value=10 Score=38.62 Aligned_cols=103 Identities=22% Similarity=0.227 Sum_probs=63.5
Q ss_pred CCCeEEEEcCCcC--H-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC---
Q 020307 161 QGGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 229 (328)
++++||-.|++.| . +...+++.|. +|+.+|.++..++.+.+.+.. ..++.++.+|+.+.. +.
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~-----~~~v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGG-----PDRALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhc-----cCcEEEEEecCCCHHHHHHHHHHHH
Confidence 4678998886443 2 3444555565 899999998877666554432 236778888886532 11
Q ss_pred --CCccceEEeccccccCCC-------------------hHHHHHHHHhcccC---CcEEEEEEe
Q 020307 230 --SGFVDAVHAGAALHCWPS-------------------PSNAVAEISRILRS---GGVFVGTTF 270 (328)
Q Consensus 230 --~~~fD~i~~~~vl~h~~d-------------------~~~~l~~~~r~Lkp---gG~l~i~~~ 270 (328)
.+.+|+|+.+..+-.... +..+++.+.+.+++ +|.+++...
T Consensus 494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 494 LAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 246899987765432211 23456666777766 677766553
|
|
| >PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed | Back alignment and domain information |
|---|
Probab=84.86 E-value=0.38 Score=34.86 Aligned_cols=30 Identities=27% Similarity=0.800 Sum_probs=21.9
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
..+.||.|+..-..... .++|.|..|+..+
T Consensus 35 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~ 64 (90)
T PRK03976 35 AKHVCPVCGRPKVKRVG---------TGIWECRKCGAKF 64 (90)
T ss_pred cCccCCCCCCCceEEEE---------EEEEEcCCCCCEE
Confidence 46789999875444332 2799999998776
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=84.74 E-value=3.6 Score=38.33 Aligned_cols=115 Identities=10% Similarity=0.050 Sum_probs=78.2
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH-------hcCcCCCCCeEEEEecCCCCCC-
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK-------QDNTILTSNLALVRADVCRLPF- 228 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-------~~~~~~~~~i~~~~~d~~~lp~- 228 (328)
+...++....|+|.|.|.....++..+....-+|+++.....+.+..+.. ..|- ....+..+.+++....+
T Consensus 188 l~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk-~~~~~~~i~gsf~~~~~v 266 (419)
T KOG3924|consen 188 LKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK-KPNKIETIHGSFLDPKRV 266 (419)
T ss_pred hccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC-CcCceeecccccCCHHHH
Confidence 66778899999999999999998887655567888887665555543321 1221 03356677777754321
Q ss_pred --CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 229 --ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 229 --~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
-....++|+++++..- ++...-+.++..-+++|-+++-..+...
T Consensus 267 ~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 267 TEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred HHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEeccccccc
Confidence 2345788888877542 2223346688999999999998887654
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.69 E-value=8.2 Score=33.22 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=47.5
Q ss_pred CCCeEEEEcCCcCHHHHHH----HHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC--
Q 020307 161 QGGLLVDVSCGSGLFSRKF----AKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l----~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 229 (328)
+++++|=.|++ |..+..+ .+.+. ++++++.+++.++...+.+... ..++.++.+|+.+.. +.
T Consensus 6 ~~~~vlItGa~-g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 6 AGKRALVTGAA-RGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAA----GGRAHAIAADLADPASVQRFFDAA 78 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHH
Confidence 46788877754 4444444 44555 8999998887666655554432 346888899986532 11
Q ss_pred ---CCccceEEecccc
Q 020307 230 ---SGFVDAVHAGAAL 242 (328)
Q Consensus 230 ---~~~fD~i~~~~vl 242 (328)
-+.+|+|+.....
T Consensus 79 ~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 79 AAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1468998876543
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=84.59 E-value=12 Score=35.10 Aligned_cols=95 Identities=19% Similarity=0.269 Sum_probs=54.6
Q ss_pred CeEEEEcCCc-CH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC----------C----
Q 020307 163 GLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----------L---- 226 (328)
Q Consensus 163 ~~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----------l---- 226 (328)
.+|--+|=|. |. ++..++++|. +|+|+|+++..++.... ....+..-+... +
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~----------G~~~i~e~~~~~~v~~~v~~g~lraTt 77 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNR----------GESYIEEPDLDEVVKEAVESGKLRATT 77 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhC----------CcceeecCcHHHHHHHHHhcCCceEec
Confidence 6888888876 54 4556667766 99999999988876542 122222222211 0
Q ss_pred -CCCCCccceEEec--ccc--ccCCCh---HHHHHHHHhcccCCcEEEEEE
Q 020307 227 -PFASGFVDAVHAG--AAL--HCWPSP---SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 227 -p~~~~~fD~i~~~--~vl--~h~~d~---~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+..-...|+++.. --+ ++-+|. ....+.+.++||+|-.+++..
T Consensus 78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlES 128 (436)
T COG0677 78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILES 128 (436)
T ss_pred ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEec
Confidence 0001134555432 111 233343 467889999999977666644
|
|
| >PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2 | Back alignment and domain information |
|---|
Probab=84.53 E-value=0.47 Score=28.00 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=18.7
Q ss_pred cccCCCchhhccCCCCccccccccCceeeCCCCccccCc
Q 020307 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (328)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 100 (328)
-||.|+.-|....+.. ....|++|+..+++.
T Consensus 3 FCp~C~nlL~p~~~~~--------~~~~C~~C~Y~~~~~ 33 (35)
T PF02150_consen 3 FCPECGNLLYPKEDKE--------KRVACRTCGYEEPIS 33 (35)
T ss_dssp BETTTTSBEEEEEETT--------TTEEESSSS-EEE-S
T ss_pred eCCCCCccceEcCCCc--------cCcCCCCCCCccCCC
Confidence 4999998765443221 122899998777543
|
7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I .... |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=84.25 E-value=11 Score=34.40 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=59.3
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC----CCCCCCCCc
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV----CRLPFASGF 232 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~----~~lp~~~~~ 232 (328)
...++.+||..|+|. |..+..+++.. +.+++++..+++..+.+++.- . ..-+.....++ ..+ .....
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~g-~-----~~v~~~~~~~~~~~l~~~-~~~~~ 227 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARELG-A-----DDTINVGDEDVAARLREL-TDGEG 227 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHhC-C-----CEEecCcccCHHHHHHHH-hCCCC
Confidence 345678999998764 66777777763 458999988888777765421 0 00011111111 011 12345
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+|+++.... ....+.++.+.|+++|.++...
T Consensus 228 vd~vld~~g------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 228 ADVVIDATG------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCEEEECCC------CHHHHHHHHHHHhcCCEEEEEc
Confidence 899986421 1345788899999999988654
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PF14354 Lar_restr_allev: Restriction alleviation protein Lar | Back alignment and domain information |
|---|
Probab=84.23 E-value=0.77 Score=30.70 Aligned_cols=35 Identities=23% Similarity=0.550 Sum_probs=19.5
Q ss_pred CcccccCCCchhhccCCC-CccccccccCceeeCCCCc
Q 020307 59 DLFSCPICYEPLIRKGPT-GLTLGAIYRSGFKCRKCDK 95 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~-~~~~~~~~~~~~~C~~C~~ 95 (328)
++..||.||++-...... ....+.. -.+.|..||.
T Consensus 2 ~LkPCPFCG~~~~~~~~~~~~~~~~~--~~V~C~~Cga 37 (61)
T PF14354_consen 2 ELKPCPFCGSADVLIRQDEGFDYGMY--YYVECTDCGA 37 (61)
T ss_pred CCcCCCCCCCcceEeecccCCCCCCE--EEEEcCCCCC
Confidence 467799998754432221 0000000 3578999987
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=84.03 E-value=11 Score=34.40 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=57.1
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC------CCCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFASG 231 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l------p~~~~ 231 (328)
..++.+||..|+|. |..+..+++......+++++.++...+.+++. . ...++...-..+ -...+
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~--------g-~~~vi~~~~~~~~~~i~~~~~~~ 235 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA--------G-ATDIINPKNGDIVEQILELTGGR 235 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh--------C-CcEEEcCCcchHHHHHHHHcCCC
Confidence 34678888877653 66667777764223788888887776666542 1 111111110000 01235
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.+|+++.... ....+.+..+.|+++|+++...
T Consensus 236 ~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 236 GVDCVIEAVG------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CCcEEEEccC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 6898885321 1246888899999999988654
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.97 E-value=12 Score=33.53 Aligned_cols=104 Identities=17% Similarity=0.213 Sum_probs=59.9
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHH-HHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC--
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSEN-MLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~-~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 229 (328)
+++++|-.|++.|. ++..+++.+. +|+.++.+.. ..+...+.+... ..++.++.+|+.+.. +.
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~i 118 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE----GVKCLLIPGDVSDEAFCKDAVEET 118 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc----CCeEEEEEccCCCHHHHHHHHHHH
Confidence 46789999976542 4455555665 8888877642 233333333322 346778889986532 11
Q ss_pred ---CCccceEEeccccccC----CC----------------hHHHHHHHHhcccCCcEEEEEEe
Q 020307 230 ---SGFVDAVHAGAALHCW----PS----------------PSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ---~~~fD~i~~~~vl~h~----~d----------------~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
-+.+|+|+.+....+. .+ +..+++.+.+.++++|.++....
T Consensus 119 ~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 119 VRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred HHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 1367988866543221 11 12345666677777787766553
|
|
| >COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription] | Back alignment and domain information |
|---|
Probab=83.75 E-value=0.58 Score=37.19 Aligned_cols=44 Identities=16% Similarity=0.372 Sum_probs=27.8
Q ss_pred ccccCCCchhhccCCCC-ccccccccCceeeCCCCccccCcccee
Q 020307 61 FSCPICYEPLIRKGPTG-LTLGAIYRSGFKCRKCDKTYSSKDNYL 104 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~-~~~~~~~~~~~~C~~C~~~~~~~~g~~ 104 (328)
+.||.|++.-....+.- ...+......-.|.+||..|..-+-..
T Consensus 1 M~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~RFTTfE~~E 45 (156)
T COG1327 1 MKCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGERFTTFERAE 45 (156)
T ss_pred CCCCCCCCCCCeeeecccccccchhhhhhcccccccccchhheee
Confidence 46999999754433221 223334445678999999996655443
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=83.68 E-value=2.4 Score=39.78 Aligned_cols=50 Identities=8% Similarity=0.010 Sum_probs=38.2
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK 206 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~ 206 (328)
+.|...++.+||-|.+|....+..|.. +| .+|++||+|+......+-+..
T Consensus 29 ~aL~i~~~d~vl~ItSaG~N~L~yL~~-~P-~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 29 EALNIGPDDRVLTITSAGCNALDYLLA-GP-KRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHhCCCCCCeEEEEccCCchHHHHHhc-CC-ceEEEEeCCHHHHHHHHHHHH
Confidence 557888999999999886666655544 43 499999999998887765543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=83.65 E-value=14 Score=33.97 Aligned_cols=93 Identities=27% Similarity=0.314 Sum_probs=55.9
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---------CC
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------FA 229 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------~~ 229 (328)
++.+||-.|+|. |..+..+++.. +. ++++++.+++..+.+++. + .. .++..+-...+ ..
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~~----g---~~--~vi~~~~~~~~~~~~~i~~~~~ 246 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAREF----G---AD--ATIDIDELPDPQRRAIVRDITG 246 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHc----C---CC--eEEcCcccccHHHHHHHHHHhC
Confidence 677888888764 55666677764 44 799999888776665431 1 11 11111100000 11
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
...+|+|+-... . ...+.+..+.|+++|+++...
T Consensus 247 ~~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 247 GRGADVVIEASG-----H-PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCCCcEEEECCC-----C-hHHHHHHHHHhccCCEEEEEc
Confidence 245898884321 1 345778889999999998764
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >COG3877 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.39 E-value=0.58 Score=34.64 Aligned_cols=26 Identities=35% Similarity=0.843 Sum_probs=20.4
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
-+..||.|+..+.. ..++|++|+..-
T Consensus 5 ~~~~cPvcg~~~iV-------------TeL~c~~~etTV 30 (122)
T COG3877 5 VINRCPVCGRKLIV-------------TELKCSNCETTV 30 (122)
T ss_pred CCCCCCccccccee-------------EEEecCCCCceE
Confidence 35679999998865 579999997643
|
|
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=83.26 E-value=16 Score=32.98 Aligned_cols=92 Identities=18% Similarity=0.096 Sum_probs=56.3
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+..++.+||-.|+|. |..+..+++.. +.+++.++.+++..+.+++. . +.... +.... ....+|++
T Consensus 164 ~~~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~~~--------g--~~~~~-~~~~~--~~~~vD~v 229 (329)
T cd08298 164 GLKPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELAREL--------G--ADWAG-DSDDL--PPEPLDAA 229 (329)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHHHh--------C--CcEEe-ccCcc--CCCcccEE
Confidence 345677888888764 44555555553 45899999888777666431 1 11111 11111 23458887
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+.... . ...+.++.+.|+++|+++...
T Consensus 230 i~~~~-----~-~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 230 IIFAP-----V-GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EEcCC-----c-HHHHHHHHHHhhcCCEEEEEc
Confidence 74321 1 246889999999999998754
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.07 E-value=14 Score=34.32 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=58.7
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec----CCC-C-CCCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD----VCR-L-PFASG 231 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d----~~~-l-p~~~~ 231 (328)
..++.+||-.|+|. |.++..+++.....+|+++|.+++..+.+++. .....+...+ +.. + ....+
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~--------Ga~~~i~~~~~~~~~~~~v~~~~~~ 254 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL--------GATDCVNPNDYDKPIQEVIVEITDG 254 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh--------CCCeEEcccccchhHHHHHHHHhCC
Confidence 45688999999875 66777777764223799999999988887652 1111111010 000 0 01122
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcccCC-cEEEEEEe
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 270 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~ 270 (328)
.+|+|+-. ...+ ..+.+..+.++++ |++++...
T Consensus 255 g~d~vid~-----~G~~-~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 255 GVDYSFEC-----IGNV-NVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCCEEEEC-----CCCH-HHHHHHHHHhhcCCCeEEEEec
Confidence 57877643 3333 3577788899886 98877654
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases | Back alignment and domain information |
|---|
Probab=83.05 E-value=1.1 Score=26.68 Aligned_cols=31 Identities=19% Similarity=0.605 Sum_probs=18.9
Q ss_pred cccccCCCchh-hccCCCCccccccccCceeeCCCC
Q 020307 60 LFSCPICYEPL-IRKGPTGLTLGAIYRSGFKCRKCD 94 (328)
Q Consensus 60 ~l~CP~C~~~l-~~~~~~~~~~~~~~~~~~~C~~C~ 94 (328)
...||.|++.. ....+.+ .-..+.++|..|+
T Consensus 5 ~v~CP~C~s~~~v~k~G~~----~~G~qryrC~~C~ 36 (36)
T PF03811_consen 5 DVHCPRCQSTEGVKKNGKS----PSGHQRYRCKDCR 36 (36)
T ss_pred eeeCCCCCCCCcceeCCCC----CCCCEeEecCcCC
Confidence 35799999976 3322221 1223678999884
|
Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=82.94 E-value=14 Score=33.20 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=57.2
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
...++.+||-.|+|. |..+..+++.. +.++++++.+++..+.+++. + . ... .+.... .....+|++
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~~----g---~-~~~---~~~~~~-~~~~~~d~v 218 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARRL----G---V-ETV---LPDEAE-SEGGGFDVV 218 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHc----C---C-cEE---eCcccc-ccCCCCCEE
Confidence 345678898888653 44555555553 34799999998888877752 1 1 111 111111 234568988
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+-.. .. ...+..+.+.|+++|.++...
T Consensus 219 id~~-----g~-~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 219 VEAT-----GS-PSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred EECC-----CC-hHHHHHHHHHhhcCCEEEEEc
Confidence 8542 11 345778888999999998743
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=82.88 E-value=8.8 Score=34.96 Aligned_cols=125 Identities=10% Similarity=0.121 Sum_probs=63.9
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe-cCCCCCCCCCccceEE
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD~i~ 237 (328)
.++.+|+-+|+|. |.............+++.+|.+++..+...+.+ . . ..... +..+. -...|+|+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-------g-~-~~~~~~~~~~~---l~~aDvVi 243 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-------G-G-NAVPLDELLEL---LNEADVVI 243 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-------C-C-eEEeHHHHHHH---HhcCCEEE
Confidence 4688999999976 544333333211347999999987553333321 1 1 22221 22111 13579999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHH
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS 306 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 306 (328)
..-.-.+. ...+..+.+..+.++.+++ +...+....+.... ......++.++|+.+.++
T Consensus 244 ~at~~~~~---~~~~~~~~~~~~~~~~~vi-DlavPrdi~~~v~~------l~~v~l~~vDdl~~~~~~ 302 (311)
T cd05213 244 SATGAPHY---AKIVERAMKKRSGKPRLIV-DLAVPRDIEPEVGE------LEGVRLYTIDDLEEVVEE 302 (311)
T ss_pred ECCCCCch---HHHHHHHHhhCCCCCeEEE-EeCCCCCCchhhcc------CCCcEEEEHHHhHHHHHH
Confidence 87654432 3334444333332445444 44433223322111 134567888888887764
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.75 E-value=0.59 Score=30.81 Aligned_cols=33 Identities=27% Similarity=0.526 Sum_probs=18.1
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 95 (328)
..|.||.||...+..-..- .-....++|++||.
T Consensus 26 v~F~CPnCGe~~I~Rc~~C----Rk~g~~Y~Cp~CGF 58 (61)
T COG2888 26 VKFPCPNCGEVEIYRCAKC----RKLGNPYRCPKCGF 58 (61)
T ss_pred eEeeCCCCCceeeehhhhH----HHcCCceECCCcCc
Confidence 4678999986443211100 00114788888874
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.74 E-value=13 Score=32.26 Aligned_cols=73 Identities=23% Similarity=0.185 Sum_probs=47.4
Q ss_pred CeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC-----
Q 020307 163 GLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA----- 229 (328)
Q Consensus 163 ~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 229 (328)
+++|-.|++.|- ++..+++.+. +|+.++.+++.++...+.+. ..++.++.+|+.+.. +.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~~~~~~~ 73 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELG------AGNAWTGALDVTDRAAWDAALADFAAA 73 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhc------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 367888866432 4455556665 89999998877666554332 236888899986632 11
Q ss_pred -CCccceEEeccccc
Q 020307 230 -SGFVDAVHAGAALH 243 (328)
Q Consensus 230 -~~~fD~i~~~~vl~ 243 (328)
.+.+|+|+.+....
T Consensus 74 ~~~~id~vi~~ag~~ 88 (260)
T PRK08267 74 TGGRLDVLFNNAGIL 88 (260)
T ss_pred cCCCCCEEEECCCCC
Confidence 35689999776543
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.72 E-value=11 Score=36.93 Aligned_cols=83 Identities=19% Similarity=0.161 Sum_probs=62.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHH----HhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CCC
Q 020307 160 AQGGLLVDVSCGSGLFSRKFA----KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FAS 230 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~----~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~ 230 (328)
-.+++||--|.| |.++..+- +.+ ..+++-+|.++..+......+...-. ..++.++.+|..+.. +.+
T Consensus 248 ~~gK~vLVTGag-GSiGsel~~qil~~~-p~~i~l~~~~E~~~~~i~~el~~~~~--~~~~~~~igdVrD~~~~~~~~~~ 323 (588)
T COG1086 248 LTGKTVLVTGGG-GSIGSELCRQILKFN-PKEIILFSRDEYKLYLIDMELREKFP--ELKLRFYIGDVRDRDRVERAMEG 323 (588)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHhcC-CCEEEEecCchHHHHHHHHHHHhhCC--CcceEEEecccccHHHHHHHHhc
Confidence 467888888854 66555554 444 35899999999998888887765321 467889999987643 456
Q ss_pred CccceEEeccccccCC
Q 020307 231 GFVDAVHAGAALHCWP 246 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~ 246 (328)
-+.|+|+....+-|+|
T Consensus 324 ~kvd~VfHAAA~KHVP 339 (588)
T COG1086 324 HKVDIVFHAAALKHVP 339 (588)
T ss_pred CCCceEEEhhhhccCc
Confidence 6799999999999997
|
|
| >COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription] | Back alignment and domain information |
|---|
Probab=82.68 E-value=0.67 Score=29.49 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=22.8
Q ss_pred cCcccccCCCchhhccCCCCccccccccCceeeCCCCcccc
Q 020307 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (328)
+..+.|-.|+..+..... ...++|+.||+.-.
T Consensus 4 ~~~Y~C~~Cg~~~~~~~~---------~~~irCp~Cg~rIl 35 (49)
T COG1996 4 MMEYKCARCGREVELDQE---------TRGIRCPYCGSRIL 35 (49)
T ss_pred eEEEEhhhcCCeeehhhc---------cCceeCCCCCcEEE
Confidence 456889999998742211 15899999988763
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=82.52 E-value=15 Score=34.07 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=58.4
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec----CCC-C-CCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD----VCR-L-PFAS 230 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d----~~~-l-p~~~ 230 (328)
..++.+||-.|+|. |.++..+++.. +. .++++|.+++.++.+++. .....+...+ +.. + ....
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~~l--------Ga~~~i~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKKF--------GATDCVNPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHc--------CCCEEEcccccchHHHHHHHHHhC
Confidence 45688999998764 66667777764 34 699999999988877542 1111111111 100 0 0112
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCC-cEEEEEEe
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 270 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~ 270 (328)
+.+|+|+-. +..+ ..+....+.|+++ |+++....
T Consensus 255 ~g~d~vid~-----~g~~-~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 255 GGVDYTFEC-----IGNV-KVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CCCcEEEEC-----CCCh-HHHHHHHHhhccCCCeEEEEcc
Confidence 358888743 2222 4577888899987 98887653
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox | Back alignment and domain information |
|---|
Probab=82.46 E-value=13 Score=25.40 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=41.2
Q ss_pred CChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeCcEEEEEE
Q 020307 246 PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAA 325 (328)
Q Consensus 246 ~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~~~~~~a 325 (328)
|-|.-.+++..+-|++|+.+.+..-+. -+..++..+++..|++.+.....+..+.+.-
T Consensus 10 P~Pvl~~kkal~~l~~G~~l~V~~d~~----------------------~a~~di~~~~~~~G~~~~~~~~~~~~~~~~I 67 (69)
T cd03420 10 PGPILKLKKEIDKLQDGEQLEVKASDP----------------------GFARDAQAWCKSTGNTLISLETEKGKVKAVI 67 (69)
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEECCc----------------------cHHHHHHHHHHHcCCEEEEEEecCCEEEEEE
Confidence 445556788888899999877766332 2457899999999999987555444444433
Q ss_pred e
Q 020307 326 Q 326 (328)
Q Consensus 326 ~ 326 (328)
+
T Consensus 68 ~ 68 (69)
T cd03420 68 E 68 (69)
T ss_pred E
Confidence 3
|
SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3. |
| >smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase | Back alignment and domain information |
|---|
Probab=82.45 E-value=1.3 Score=26.49 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=18.0
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 95 (328)
-.||.|++.-...- . ..-..+.+.|.+|+.
T Consensus 4 ~pCP~CGG~DrFr~-~----d~~g~G~~~C~~Cg~ 33 (37)
T smart00778 4 GPCPNCGGSDRFRF-D----DKDGRGTWFCSVCGA 33 (37)
T ss_pred cCCCCCCCcccccc-c----cCCCCcCEEeCCCCC
Confidence 35999998432211 0 011237899999964
|
This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities. |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=82.08 E-value=7 Score=40.02 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCc-C-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh-------cCc-C------CCCCeEEEEecCC
Q 020307 161 QGGLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DNT-I------LTSNLALVRADVC 224 (328)
Q Consensus 161 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-------~~~-~------~~~~i~~~~~d~~ 224 (328)
+-.+|--||+|+ | .++..++..|. +|+.+|.+++.++.+++++.. .+. . ...++... .|..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 388 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYA 388 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHH
Confidence 345799999997 3 35555666665 999999999999888766542 110 0 00122211 1221
Q ss_pred CCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 225 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 225 ~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
. -...|+|+-. +.|.+.-...+++++.++++|+.+|...+..
T Consensus 389 ~----~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasnTS~ 430 (714)
T TIGR02437 389 G----FDNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAILASNTST 430 (714)
T ss_pred H----hcCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 1 1346777743 4455444568999999999999888776644
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.08 E-value=20 Score=30.81 Aligned_cols=75 Identities=27% Similarity=0.287 Sum_probs=48.1
Q ss_pred CCCeEEEEcCCcC--H-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-C--------
Q 020307 161 QGGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F-------- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~-------- 228 (328)
+++++|-.|+..| . ++..|++++. +|++++.++...+.....+.. ..++.++.+|+.+.. +
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEEAAERVAAEILA-----GGRAIAVAADVSDEADVEAAVAAAL 76 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-----CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 3568888886543 2 4455555665 899999998776665554432 235778888886532 0
Q ss_pred -CCCccceEEecccc
Q 020307 229 -ASGFVDAVHAGAAL 242 (328)
Q Consensus 229 -~~~~fD~i~~~~vl 242 (328)
..+.+|+|+.....
T Consensus 77 ~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 77 ERFGSVDILVNNAGT 91 (251)
T ss_pred HHhCCCCEEEECCCC
Confidence 11357999887654
|
|
| >TIGR00244 transcriptional regulator NrdR | Back alignment and domain information |
|---|
Probab=82.03 E-value=0.83 Score=36.32 Aligned_cols=43 Identities=19% Similarity=0.447 Sum_probs=27.0
Q ss_pred ccccCCCchhhccCCCC-ccccccccCceeeCCCCccccCccce
Q 020307 61 FSCPICYEPLIRKGPTG-LTLGAIYRSGFKCRKCDKTYSSKDNY 103 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~-~~~~~~~~~~~~C~~C~~~~~~~~g~ 103 (328)
+.||.|+..-....+.- ...+......-.|.+|+..|...+-+
T Consensus 1 M~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~RFTTyErv 44 (147)
T TIGR00244 1 MHCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHERFTTFERA 44 (147)
T ss_pred CCCCCCCCCCCEeeeccccCCCCeeeecccCCccCCccceeeec
Confidence 46999999654433221 12333344567899999999665544
|
Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes. |
| >smart00834 CxxC_CXXC_SSSS Putative regulatory protein | Back alignment and domain information |
|---|
Probab=81.95 E-value=0.7 Score=28.01 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=19.8
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~ 95 (328)
.++|+.|+..+....... ......|+.||.
T Consensus 5 ~y~C~~Cg~~fe~~~~~~------~~~~~~CP~Cg~ 34 (41)
T smart00834 5 EYRCEDCGHTFEVLQKIS------DDPLATCPECGG 34 (41)
T ss_pred EEEcCCCCCEEEEEEecC------CCCCCCCCCCCC
Confidence 478999999664432110 025788999987
|
CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence. |
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.85 E-value=16 Score=32.01 Aligned_cols=74 Identities=28% Similarity=0.345 Sum_probs=45.7
Q ss_pred CCCeEEEEcCCcC--H-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C----
Q 020307 161 QGGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 228 (328)
+++++|-.|.+.| . +...++..+. +|+.++.+++.++...+.+... ..++.++..|+.+.. +
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQA----GPEGLGVSADVRDYAAVEAAFAQIA 81 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh----CCceEEEECCCCCHHHHHHHHHHHH
Confidence 4678888885433 1 3444555554 8999999887766554444432 235677888886532 1
Q ss_pred -CCCccceEEecc
Q 020307 229 -ASGFVDAVHAGA 240 (328)
Q Consensus 229 -~~~~fD~i~~~~ 240 (328)
..+.+|+++.+.
T Consensus 82 ~~~~~iD~vi~~a 94 (264)
T PRK07576 82 DEFGPIDVLVSGA 94 (264)
T ss_pred HHcCCCCEEEECC
Confidence 013579998654
|
|
| >PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species | Back alignment and domain information |
|---|
Probab=81.56 E-value=1.2 Score=23.87 Aligned_cols=9 Identities=33% Similarity=0.992 Sum_probs=6.1
Q ss_pred CceeeCCCC
Q 020307 86 SGFKCRKCD 94 (328)
Q Consensus 86 ~~~~C~~C~ 94 (328)
..+.|++||
T Consensus 15 v~f~CPnCG 23 (24)
T PF07754_consen 15 VPFPCPNCG 23 (24)
T ss_pred ceEeCCCCC
Confidence 366777776
|
It is likely to bind zinc via its four well-conserved cysteine residues. |
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.52 E-value=13 Score=34.33 Aligned_cols=97 Identities=20% Similarity=0.240 Sum_probs=57.6
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe-cC-C----CC-CCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DV-C----RL-PFAS 230 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~-~----~l-p~~~ 230 (328)
..++.+||-+|+|. |..+..+++.....+|+++|.+++..+.+++. + . . .++.. +. . .+ ....
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----g---a-~-~~i~~~~~~~~~~~~~~~~~~ 252 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----G---A-T-DFINPKDSDKPVSEVIREMTG 252 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C---C-C-cEeccccccchHHHHHHHHhC
Confidence 45688999998764 66666677764223699999998888777542 1 1 1 11111 00 0 00 0112
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCC-cEEEEEEe
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 270 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~ 270 (328)
+.+|+|+-. ... ...+.+..+.|+++ |++++...
T Consensus 253 ~g~d~vid~-----~g~-~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 253 GGVDYSFEC-----TGN-ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCCCEEEEC-----CCC-hHHHHHHHHhcccCCCEEEEEcC
Confidence 358888743 222 24577888899885 98887654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria | Back alignment and domain information |
|---|
Probab=81.46 E-value=20 Score=27.89 Aligned_cols=70 Identities=17% Similarity=0.051 Sum_probs=53.9
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCC
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL 309 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf 309 (328)
+.-.|+|++.+-=+- .+....|-.+.+.|..+|.+.+.+|-.. ...+.++.++.+....+|+
T Consensus 43 ddvvD~vllWwR~~D-gDL~D~LvDa~~~L~d~G~IWvltPK~g-----------------r~g~V~~~~I~eaA~taGL 104 (127)
T PF11253_consen 43 DDVVDVVLLWWRDDD-GDLVDALVDARTNLADDGVIWVLTPKAG-----------------RPGHVEPSDIREAAPTAGL 104 (127)
T ss_pred cccccEEEEEEECCc-chHHHHHHHHHhhhcCCCEEEEEccCCC-----------------CCCCCCHHHHHHHHhhcCC
Confidence 456899988765332 2566778889999999999999997643 2356788999999999999
Q ss_pred eEEEEEEe
Q 020307 310 TNYTSKVQ 317 (328)
Q Consensus 310 ~~v~~~~~ 317 (328)
...+...-
T Consensus 105 ~~t~~~~v 112 (127)
T PF11253_consen 105 VQTKSCAV 112 (127)
T ss_pred eeeeeecc
Confidence 87775443
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.45 E-value=16 Score=31.69 Aligned_cols=76 Identities=17% Similarity=0.140 Sum_probs=49.7
Q ss_pred cCCCeEEEEcCCcCHHHHH----HHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-C------
Q 020307 160 AQGGLLVDVSCGSGLFSRK----FAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F------ 228 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~----l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~------ 228 (328)
.+++++|-.|+ +|..+.. |++.+. +|+.++-+...++...+.+... ..++.++.+|+.+.. +
T Consensus 10 ~~~k~ilItGa-~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~----~~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 10 LSGKTALVTGG-SRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEAL----GIDALWIAADVADEADIERLAEE 82 (259)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc----CCeEEEEEccCCCHHHHHHHHHH
Confidence 35678999985 4444444 444455 8999999887776666555432 346778899987632 1
Q ss_pred ---CCCccceEEecccc
Q 020307 229 ---ASGFVDAVHAGAAL 242 (328)
Q Consensus 229 ---~~~~fD~i~~~~vl 242 (328)
..+.+|+|+.....
T Consensus 83 ~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 83 TLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 01468999877553
|
|
| >PRK12495 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.41 E-value=0.9 Score=38.53 Aligned_cols=31 Identities=19% Similarity=0.462 Sum_probs=24.2
Q ss_pred ccCcccccCCCchhhccCCCCccccccccCceeeCCCCcccc
Q 020307 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (328)
.+..+.|+.||.++... .+..+|+.|+..+-
T Consensus 39 tmsa~hC~~CG~PIpa~-----------pG~~~Cp~CQ~~~~ 69 (226)
T PRK12495 39 TMTNAHCDECGDPIFRH-----------DGQEFCPTCQQPVT 69 (226)
T ss_pred ccchhhcccccCcccCC-----------CCeeECCCCCCccc
Confidence 44567799999999742 27899999998764
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=81.39 E-value=5 Score=36.16 Aligned_cols=73 Identities=22% Similarity=0.262 Sum_probs=41.9
Q ss_pred CcCHHHHHHHHh----CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEE----EEecCCCCC-----CCCCccceEE
Q 020307 171 GSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL----VRADVCRLP-----FASGFVDAVH 237 (328)
Q Consensus 171 G~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~----~~~d~~~lp-----~~~~~fD~i~ 237 (328)
|+|.++..|.++ +| .+++.+|.++..+...+..+..... ..++.+ +.+|+.+.. +.....|+|+
T Consensus 6 a~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~--~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVf 82 (293)
T PF02719_consen 6 AGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFP--DPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVF 82 (293)
T ss_dssp TTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC----TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEE
T ss_pred cccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhccc--ccCcccccCceeecccCHHHHHHHHhhcCCCEEE
Confidence 567777666654 43 5799999999999988888753211 234544 477875532 5566899999
Q ss_pred eccccccCC
Q 020307 238 AGAALHCWP 246 (328)
Q Consensus 238 ~~~vl~h~~ 246 (328)
....+-|++
T Consensus 83 HaAA~KhVp 91 (293)
T PF02719_consen 83 HAAALKHVP 91 (293)
T ss_dssp E------HH
T ss_pred EChhcCCCC
Confidence 999999885
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.37 E-value=0.89 Score=42.66 Aligned_cols=32 Identities=28% Similarity=0.631 Sum_probs=24.0
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCccccCcc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~ 101 (328)
.-.||.||......+. +.++|++|+..++...
T Consensus 350 ~p~Cp~Cg~~m~S~G~----------~g~rC~kCg~~~~~~~ 381 (421)
T COG1571 350 NPVCPRCGGRMKSAGR----------NGFRCKKCGTRARETL 381 (421)
T ss_pred CCCCCccCCchhhcCC----------CCcccccccccCCccc
Confidence 3469999998865443 3899999998886543
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.26 E-value=4 Score=36.71 Aligned_cols=101 Identities=14% Similarity=0.179 Sum_probs=59.1
Q ss_pred CeEEEEcCCc--CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh-------cCcC-------CCCCeEEEEecCCCC
Q 020307 163 GLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DNTI-------LTSNLALVRADVCRL 226 (328)
Q Consensus 163 ~~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-------~~~~-------~~~~i~~~~~d~~~l 226 (328)
.+|--||+|+ +.++..++..|. +|+.+|.+++.++.+++++.. .+.. ...++. ...|.+.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGDF 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHHh
Confidence 4788899986 345666677666 999999999999987766432 1100 001111 12233211
Q ss_pred CCCCCccceEEeccccccCCChHHHHHHHHhcc-cCCcEEEEEEec
Q 020307 227 PFASGFVDAVHAGAALHCWPSPSNAVAEISRIL-RSGGVFVGTTFL 271 (328)
Q Consensus 227 p~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~L-kpgG~l~i~~~~ 271 (328)
...|+|+-. +.|...-...++.++.+.+ +|+.++...+..
T Consensus 83 ----~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 83 ----ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred ----CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 245766643 2222222346788888888 788777665543
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=81.24 E-value=7.1 Score=38.28 Aligned_cols=130 Identities=8% Similarity=0.131 Sum_probs=63.2
Q ss_pred CCCeEEEEcCCc-CH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 161 QGGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
.+.+|+-||+|. |. .+..|...+ ..+++.++.+.+..+.....+. .......++.++.-.-...|+|++
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~~G-~~~V~V~nRs~era~~La~~~~--------g~~i~~~~~~dl~~al~~aDVVIs 335 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVSKG-CTKMVVVNRSEERVAALREEFP--------DVEIIYKPLDEMLACAAEADVVFT 335 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhC--------CCceEeecHhhHHHHHhcCCEEEE
Confidence 468999999975 33 333444444 2479999999877665554321 111222222222211246899997
Q ss_pred ccccccCCChHHHHHHHHhcccC-CcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHH
Q 020307 239 GAALHCWPSPSNAVAEISRILRS-GGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~Lkp-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 305 (328)
.-.-.+.--....++.+...-+. +..+++.+...+....+-+.+. .....|+.++|+.+.+
T Consensus 336 AT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v~~l------~~v~lydiDdL~~i~~ 397 (519)
T PLN00203 336 STSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACVSEL------ESARVYNVDDLKEVVA 397 (519)
T ss_pred ccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccccccC------CCCeEEEeccHHHHHH
Confidence 64332211112334444322111 2336666766554333321110 2344555566555544
|
|
| >PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454 | Back alignment and domain information |
|---|
Probab=81.19 E-value=0.73 Score=36.84 Aligned_cols=50 Identities=28% Similarity=0.544 Sum_probs=30.5
Q ss_pred CcccccCCCchhhcc--CCCCccccccccCceeeCCCCccccCccceeeeec
Q 020307 59 DLFSCPICYEPLIRK--GPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTV 108 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~--~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~ 108 (328)
.+-.||.|+.+..-. .+....++.-+....+|.+||..||..+..++...
T Consensus 38 tI~~Cp~C~~~IrG~y~v~gv~~~g~~~~~PsYC~~CGkpyPWt~~~L~aa~ 89 (158)
T PF10083_consen 38 TITSCPNCSTPIRGDYHVEGVFGLGGHYEAPSYCHNCGKPYPWTENALEAAN 89 (158)
T ss_pred HHHHCcCCCCCCCCceecCCeeeeCCCCCCChhHHhCCCCCchHHHHHHHHH
Confidence 345699998865321 11122233334456789999999998776655433
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.05 E-value=25 Score=29.87 Aligned_cols=75 Identities=17% Similarity=0.104 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCcCHHHHHH----HHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC--
Q 020307 161 QGGLLVDVSCGSGLFSRKF----AKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l----~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 229 (328)
.+.+||-+|. +|.++..+ ++.+. +|++++.++...+...+.+.. ..++.++.+|+.+.. +.
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 76 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNN-----KGNVLGLAADVRDEADVQRAVDAI 76 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhc-----cCcEEEEEccCCCHHHHHHHHHHH
Confidence 3568898885 45544444 44454 899999888766655554432 246788888886532 11
Q ss_pred ---CCccceEEeccccc
Q 020307 230 ---SGFVDAVHAGAALH 243 (328)
Q Consensus 230 ---~~~fD~i~~~~vl~ 243 (328)
-+.+|+|+......
T Consensus 77 ~~~~~~~d~vi~~ag~~ 93 (237)
T PRK07326 77 VAAFGGLDVLIANAGVG 93 (237)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 13689888765443
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.01 E-value=16 Score=31.80 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=45.5
Q ss_pred CeEEEEcCCcCHHHHH----HHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C-----
Q 020307 163 GLLVDVSCGSGLFSRK----FAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F----- 228 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~----l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~----- 228 (328)
.+||-.|+. |..+.. +++.+. +|++++.++...+...+.+... ..++.++.+|+.+.. +
T Consensus 2 ~~vlVtGas-g~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 74 (263)
T PRK06181 2 KVVIITGAS-EGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADH----GGEALVVPTDVSDAEACERLIEAAVA 74 (263)
T ss_pred CEEEEecCC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 467877754 444443 445554 8999999887666555544432 346778888886632 0
Q ss_pred CCCccceEEecccc
Q 020307 229 ASGFVDAVHAGAAL 242 (328)
Q Consensus 229 ~~~~fD~i~~~~vl 242 (328)
.-+..|+|+.+...
T Consensus 75 ~~~~id~vi~~ag~ 88 (263)
T PRK06181 75 RFGGIDILVNNAGI 88 (263)
T ss_pred HcCCCCEEEECCCc
Confidence 01358999877554
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.90 E-value=14 Score=34.25 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=57.8
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC--CCC-----CCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL-----PFAS 230 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~l-----p~~~ 230 (328)
..++.+||-.|+|. |.++..+++.....+++++|.+++..+.+++. ... .++..+- ..+ ....
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~--------Ga~-~~i~~~~~~~~~~~~v~~~~~ 255 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF--------GVT-EFVNPKDHDKPVQEVIAEMTG 255 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc--------CCc-eEEcccccchhHHHHHHHHhC
Confidence 45788999998764 56666677764223799999999888877652 111 1111100 000 0112
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCC-cEEEEEEe
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 270 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~ 270 (328)
+.+|+++-. +.. ...+....+.+++| |++++...
T Consensus 256 ~~~d~vid~-----~G~-~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 256 GGVDYSFEC-----TGN-IDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred CCCCEEEEC-----CCC-hHHHHHHHHHhhcCCCEEEEECc
Confidence 357877642 222 33567778889996 98887654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=80.89 E-value=7.5 Score=39.83 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=63.0
Q ss_pred CeEEEEcCCc-CH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh-------cCcC-------CCCCeEEEEecCCCC
Q 020307 163 GLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DNTI-------LTSNLALVRADVCRL 226 (328)
Q Consensus 163 ~~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-------~~~~-------~~~~i~~~~~d~~~l 226 (328)
.+|.-||+|+ |. ++..++..|. +|+.+|++++.++.+.+++.. .+.. ...++.+. .|+..+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh
Confidence 5799999998 33 5555666665 999999999999887766532 1100 01122221 222221
Q ss_pred CCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 227 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 227 p~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
...|+|+-. +.|.+.-...+++++.++++|+.+|...+..
T Consensus 391 ----~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasNTSs 430 (715)
T PRK11730 391 ----ERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILASNTST 430 (715)
T ss_pred ----cCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 346766643 3344434468999999999999887766644
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=80.89 E-value=3.8 Score=32.27 Aligned_cols=123 Identities=9% Similarity=0.062 Sum_probs=64.9
Q ss_pred ccCCCeEEEEcCCc-CH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 159 SAQGGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
..++.++|=+|+|. |. ....|...+. .+++.+.-+.+-.+...+.+. ...+.+.. +.+++-....+|+|
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~------~~~~~~~~--~~~~~~~~~~~Div 79 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFG------GVNIEAIP--LEDLEEALQEADIV 79 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHT------GCSEEEEE--GGGHCHHHHTESEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcC------ccccceee--HHHHHHHHhhCCeE
Confidence 34688999999875 22 4455555553 359999998876665555442 23444443 33333123479999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEE-EEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHH
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVF-VGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIED 302 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 302 (328)
+..-...+..-....+...... + ++.+...+....+.+.+ ......++.+++++
T Consensus 80 I~aT~~~~~~i~~~~~~~~~~~------~~~v~Dla~Pr~i~~~v~~------~~~v~~~~~d~l~~ 134 (135)
T PF01488_consen 80 INATPSGMPIITEEMLKKASKK------LRLVIDLAVPRDIDPEVAE------LPGVRLYDLDDLKE 134 (135)
T ss_dssp EE-SSTTSTSSTHHHHTTTCHH------CSEEEES-SS-SB-TTCGG------STTECCEEHHHHHH
T ss_pred EEecCCCCcccCHHHHHHHHhh------hhceeccccCCCCChhhcc------cCCeEEEEhhhccc
Confidence 9877665543223322222211 3 55555433333322111 14456777777765
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.86 E-value=27 Score=29.88 Aligned_cols=73 Identities=25% Similarity=0.271 Sum_probs=44.4
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC---------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--------- 228 (328)
+++++|-.|++.|. ++..+++.+. +|++++.+++.++...+.+ ..++.++.+|+.+..-
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAEL-------GESALVIRADAGDVAAQKALAQALA 75 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHh-------CCceEEEEecCCCHHHHHHHHHHHH
Confidence 35678888865432 4444555565 8999998876555444332 2356777888755320
Q ss_pred -CCCccceEEecccc
Q 020307 229 -ASGFVDAVHAGAAL 242 (328)
Q Consensus 229 -~~~~fD~i~~~~vl 242 (328)
..+.+|+++.+...
T Consensus 76 ~~~~~id~vi~~ag~ 90 (249)
T PRK06500 76 EAFGRLDAVFINAGV 90 (249)
T ss_pred HHhCCCCEEEECCCC
Confidence 11468998876544
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.81 E-value=7.5 Score=35.21 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=51.4
Q ss_pred CeEEEEcCCc-C-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 163 GLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 163 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
.+|.=||+|. | .++..+.+.+...+|+++|.+++..+.+++. + .. .....+..+. -...|+|+..-
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g----~~-~~~~~~~~~~---~~~aDvViiav 74 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----G----LG-DRVTTSAAEA---VKGADLVILCV 74 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----C----CC-ceecCCHHHH---hcCCCEEEECC
Confidence 5789999886 3 3555566555334899999999877766541 1 11 1111122111 13468887654
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVG 267 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i 267 (328)
-... ...+++++...+++|..++.
T Consensus 75 p~~~---~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 75 PVGA---SGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred CHHH---HHHHHHHHHhhCCCCCEEEe
Confidence 3221 23456677777788775543
|
|
| >PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins | Back alignment and domain information |
|---|
Probab=80.81 E-value=1.1 Score=30.85 Aligned_cols=28 Identities=21% Similarity=0.501 Sum_probs=19.8
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
-.||.||....... ....+.|+.||...
T Consensus 29 q~C~~CG~~~~~~~---------~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 29 QTCPRCGHRNKKRR---------SGRVFTCPNCGFEM 56 (69)
T ss_pred cCccCccccccccc---------ccceEEcCCCCCEE
Confidence 34999998765511 12589999998764
|
More information about these proteins can be found at Protein of the Month: Transposase []. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=80.80 E-value=7 Score=34.93 Aligned_cols=84 Identities=12% Similarity=0.055 Sum_probs=49.8
Q ss_pred eEEEEcCCc--CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccc
Q 020307 164 LLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 241 (328)
Q Consensus 164 ~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~v 241 (328)
+|.=||+|. |.++..|.+.+. +|+++|.+++.++.+.+. ..+.....+.+. -...|+|+..--
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~---------g~~~~~~~~~~~----~~~aDlVilavp 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIER---------GLVDEASTDLSL----LKDCDLVILALP 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHC---------CCcccccCCHhH----hcCCCEEEEcCC
Confidence 466788875 456666777665 899999999888776542 111111111111 235688886543
Q ss_pred cccCCChHHHHHHHHhcccCCcEE
Q 020307 242 LHCWPSPSNAVAEISRILRSGGVF 265 (328)
Q Consensus 242 l~h~~d~~~~l~~~~r~LkpgG~l 265 (328)
... ...+++++...++++.++
T Consensus 67 ~~~---~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 IGL---LLPPSEQLIPALPPEAIV 87 (279)
T ss_pred HHH---HHHHHHHHHHhCCCCcEE
Confidence 221 135677777778776544
|
|
| >PRK00299 sulfur transfer protein SirA; Reviewed | Back alignment and domain information |
|---|
Probab=80.80 E-value=18 Score=25.74 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=41.1
Q ss_pred CChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeCcEEEEE
Q 020307 246 PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFA 324 (328)
Q Consensus 246 ~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~~~~~~ 324 (328)
|-|.-.+++..+-+++|+.+.+..-+. -+.+++..+.+..|.+++.....+..+.+.
T Consensus 20 P~Pll~~kk~l~~l~~G~~l~V~~dd~----------------------~~~~di~~~~~~~G~~~~~~~~~~g~~~~~ 76 (81)
T PRK00299 20 PEPVMMVRKTVRNMQPGETLLIIADDP----------------------ATTRDIPSFCRFMDHELLAQETEQLPYRYL 76 (81)
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEeCCc----------------------cHHHHHHHHHHHcCCEEEEEEecCCEEEEE
Confidence 556667888888999999887765322 245789999999999998755544443333
|
|
| >TIGR01053 LSD1 zinc finger domain, LSD1 subclass | Back alignment and domain information |
|---|
Probab=80.62 E-value=1.3 Score=25.31 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=21.2
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCcc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 96 (328)
+.|.-|+..|....+. ..++|..|+..
T Consensus 2 ~~C~~C~t~L~yP~gA---------~~vrCs~C~~v 28 (31)
T TIGR01053 2 VVCGGCRTLLMYPRGA---------SSVRCALCQTV 28 (31)
T ss_pred cCcCCCCcEeecCCCC---------CeEECCCCCeE
Confidence 5799999988776544 68999999754
|
This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC |
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.59 E-value=13 Score=33.23 Aligned_cols=76 Identities=24% Similarity=0.318 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C----
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 228 (328)
+++++|-.|++.|- .+..+++.|. +|+.++.+++.++...+.+.. ...+..+.+|+.+.. +
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~ 80 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGG-----DDRVLTVVADVTDLAAMQAAAEEAV 80 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC-----CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 46789988876542 4455555565 899999998877665554421 234555668876532 0
Q ss_pred -CCCccceEEeccccc
Q 020307 229 -ASGFVDAVHAGAALH 243 (328)
Q Consensus 229 -~~~~fD~i~~~~vl~ 243 (328)
.-+.+|+++.+..+.
T Consensus 81 ~~~g~id~vI~nAG~~ 96 (296)
T PRK05872 81 ERFGGIDVVVANAGIA 96 (296)
T ss_pred HHcCCCCEEEECCCcC
Confidence 115689999877653
|
|
| >PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase | Back alignment and domain information |
|---|
Probab=80.57 E-value=6.8 Score=26.75 Aligned_cols=59 Identities=15% Similarity=0.103 Sum_probs=40.2
Q ss_pred CChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeCcEEEEEE
Q 020307 246 PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAA 325 (328)
Q Consensus 246 ~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~~~~~~a 325 (328)
|.|.-.++...+-|++|..+.+..-+. -+..++..+++..|++++.....+..+.+.-
T Consensus 11 P~Pll~~~~~l~~l~~G~~l~v~~d~~----------------------~~~~di~~~~~~~g~~~~~~~~~~~~~~i~I 68 (70)
T PF01206_consen 11 PMPLLKAKKALKELPPGEVLEVLVDDP----------------------AAVEDIPRWCEENGYEVVEVEEEGGEYRILI 68 (70)
T ss_dssp THHHHHHHHHHHTSGTT-EEEEEESST----------------------THHHHHHHHHHHHTEEEEEEEESSSSEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCEEEEEECCc----------------------cHHHHHHHHHHHCCCEEEEEEEeCCEEEEEE
Confidence 445556777788889998887766332 2457899999999999888655555444443
Q ss_pred e
Q 020307 326 Q 326 (328)
Q Consensus 326 ~ 326 (328)
+
T Consensus 69 ~ 69 (70)
T PF01206_consen 69 R 69 (70)
T ss_dssp E
T ss_pred E
Confidence 3
|
This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A. |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=80.53 E-value=8.1 Score=36.61 Aligned_cols=89 Identities=10% Similarity=0.014 Sum_probs=54.0
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..+++|+-+|+|. |......++.. +.+|+++|.++.....+.. . ...+. ++++. . ...|+|+.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~---------~-G~~v~--~leea-l--~~aDVVIt 256 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAM---------D-GFRVM--TMEEA-A--KIGDIFIT 256 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHh---------c-CCEeC--CHHHH-H--hcCCEEEE
Confidence 3688999999997 66555555542 4589999998865444432 1 12221 22221 1 24688876
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.- ..+..+=.+....+|+|++++...
T Consensus 257 aT-----G~~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 257 AT-----GNKDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred CC-----CCHHHHHHHHHhcCCCCcEEEEEC
Confidence 32 233332345888999999888765
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >COG1779 C4-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.51 E-value=0.83 Score=38.11 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=26.0
Q ss_pred ccCcccccCCCchhhccCCC--CccccccccCceeeCCCCccc
Q 020307 57 EGDLFSCPICYEPLIRKGPT--GLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~--~~~~~~~~~~~~~C~~C~~~~ 97 (328)
....+.||+|++.+...... .--++.+......|.+||-++
T Consensus 11 ~~~~~~CPvCg~~l~~~~~~~~IPyFG~V~i~t~~C~~CgYR~ 53 (201)
T COG1779 11 FETRIDCPVCGGTLKAHMYLYDIPYFGEVLISTGVCERCGYRS 53 (201)
T ss_pred eeeeecCCcccceeeEEEeeecCCccceEEEEEEEccccCCcc
Confidence 34567899999965332110 012455566788999998665
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=80.51 E-value=23 Score=33.53 Aligned_cols=102 Identities=20% Similarity=0.245 Sum_probs=58.5
Q ss_pred ccCCCeEEEEc-CC-cCHHHHHHHHhC-C-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCC---CCC----
Q 020307 159 SAQGGLLVDVS-CG-SGLFSRKFAKSG-T-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC---RLP---- 227 (328)
Q Consensus 159 ~~~~~~vLDiG-cG-~G~~~~~l~~~~-~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~---~lp---- 227 (328)
..++.+||-+| +| .|.++..+++.. . ..+++++|.+++.++.+++....... .........+.. .+.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~--~~Ga~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA--SRGIELLYVNPATIDDLHATLM 250 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc--ccCceEEEECCCccccHHHHHH
Confidence 45678999887 45 477777777762 1 23699999999999888774211000 001111111111 110
Q ss_pred --CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 020307 228 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT 268 (328)
Q Consensus 228 --~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~ 268 (328)
.....+|+|+... .. ...+....+.++++|.+++.
T Consensus 251 ~~t~g~g~D~vid~~-----g~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 251 ELTGGQGFDDVFVFV-----PV-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHhCCCCCCEEEEcC-----CC-HHHHHHHHHHhccCCeEEEE
Confidence 1123588887532 12 34578888999988876553
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >smart00531 TFIIE Transcription initiation factor IIE | Back alignment and domain information |
|---|
Probab=80.33 E-value=0.68 Score=37.25 Aligned_cols=38 Identities=18% Similarity=0.503 Sum_probs=23.6
Q ss_pred ccCcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
....+.||.|+..+...... .... ..+.+.|+.||..-
T Consensus 96 ~~~~Y~Cp~C~~~y~~~ea~--~~~d-~~~~f~Cp~Cg~~l 133 (147)
T smart00531 96 NNAYYKCPNCQSKYTFLEAN--QLLD-MDGTFTCPRCGEEL 133 (147)
T ss_pred CCcEEECcCCCCEeeHHHHH--HhcC-CCCcEECCCCCCEE
Confidence 34679999999866442211 1111 23569999998653
|
|
| >TIGR00373 conserved hypothetical protein TIGR00373 | Back alignment and domain information |
|---|
Probab=80.18 E-value=0.68 Score=37.75 Aligned_cols=32 Identities=19% Similarity=0.464 Sum_probs=23.1
Q ss_pred ccCcccccCCCchhhccCCCCccccccccCceeeCCCCcc
Q 020307 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (328)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 96 (328)
....+.||.|+..+.... .....+.|+.||..
T Consensus 106 ~~~~Y~Cp~c~~r~tf~e--------A~~~~F~Cp~Cg~~ 137 (158)
T TIGR00373 106 NNMFFICPNMCVRFTFNE--------AMELNFTCPRCGAM 137 (158)
T ss_pred CCCeEECCCCCcEeeHHH--------HHHcCCcCCCCCCE
Confidence 447789999998765432 23357999999865
|
This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain. |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=80.15 E-value=7.4 Score=37.11 Aligned_cols=88 Identities=11% Similarity=0.119 Sum_probs=53.8
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.+.+|+-+|+|. |......++.. +.+|+.+|.++.....+.. . ...+ .++.+. -...|+|+..
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~~---------~-G~~v--~~l~ea---l~~aDVVI~a 274 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQAAM---------D-GFRV--MTMEEA---AELGDIFVTA 274 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHHh---------c-CCEe--cCHHHH---HhCCCEEEEC
Confidence 688999999986 54444444432 4499999999865544432 1 1221 122221 1257998864
Q ss_pred cccccCCChHHHH-HHHHhcccCCcEEEEEEe
Q 020307 240 AALHCWPSPSNAV-AEISRILRSGGVFVGTTF 270 (328)
Q Consensus 240 ~vl~h~~d~~~~l-~~~~r~LkpgG~l~i~~~ 270 (328)
- ..+. .+ .+....+|+|++++....
T Consensus 275 T-----G~~~-vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 275 T-----GNKD-VITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred C-----CCHH-HHHHHHHhcCCCCCEEEEcCC
Confidence 3 2333 44 478889999998877653
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=80.10 E-value=23 Score=32.23 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=57.4
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec------CCCCCCCC
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD------VCRLPFAS 230 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d------~~~lp~~~ 230 (328)
..++.+||-.|+|. |..+..+++.. +.+ +++++.++...+.+++. + . ..++..+ +... ...
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~~----g---~--~~~~~~~~~~~~~~~~~-~~~ 225 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVAREL----G---A--DDTINPKEEDVEKVREL-TEG 225 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHc----C---C--CEEecCccccHHHHHHH-hCC
Confidence 45677899998765 66666777664 345 99999888776665431 1 1 1111111 1111 122
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
..+|+|+..- .....+..+.+.|+++|+++...
T Consensus 226 ~~~d~vld~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 226 RGADLVIEAA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCCEEEECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 3489888542 12346788899999999988765
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 328 | ||||
| 3dlc_A | 219 | Crystal Structure Of A Putative S-Adenosyl-L-Methio | 7e-08 | ||
| 1vl5_A | 260 | Crystal Structure Of A Putative Methyltransferase ( | 2e-05 | ||
| 3ccf_A | 279 | Crystal Structure Of Putative Methyltransferase (Yp | 3e-05 | ||
| 3l8d_A | 242 | Crystal Structure Of Methyltransferase From Bacillu | 6e-05 |
| >pdb|3DLC|A Chain A, Crystal Structure Of A Putative S-Adenosyl-L-Methionine-Dependent Methyltransferase (Mmp1179) From Methanococcus Maripaludis At 1.15 A Resolution Length = 219 | Back alignment and structure |
|
| >pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331) From Bacillus Halodurans C-125 At 1.95 A Resolution Length = 260 | Back alignment and structure |
|
| >pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase (Yp_321342.1) From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution Length = 279 | Back alignment and structure |
|
| >pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus Thuringiensis Length = 242 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 99.9 bits (249), Expect = 3e-25
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 10/160 (6%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
G +D+ G G S AK +S + ALDFS++M I N L + +V+
Sbjct: 43 TAGTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHMNEIALKNIADAN--LNDRIQIVQ 99
Query: 221 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG-VFVGTTFLRYTSSTSL 279
DV +P + D + + ++ W + A EI RIL+SGG ++G F S+
Sbjct: 100 GDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSI 159
Query: 280 TGRVLR------ERILQNYNYLTEEEIEDLCTSCGLTNYT 313
+ ++R E +N + E +++ G+++Y
Sbjct: 160 SAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYE 199
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 5e-24
Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 17/158 (10%)
Query: 141 QNFNRSGFPGPDEEEYFKSA----QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSEN 196
+ ++++ P + +G ++ D+ G+G +S A G + V A++ S
Sbjct: 10 KQYSQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLF--VYAVEPSIV 67
Query: 197 MLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEIS 256
M +Q + L VD V + A+H + + E+
Sbjct: 68 MRQQAVVH---------PQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQ 118
Query: 257 RILRSGGVFVGTTFLRYTSSTSLTG--RVLRERILQNY 292
RI+R G + + T +R L L E L+
Sbjct: 119 RIIRDGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFL 156
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 96.9 bits (241), Expect = 7e-24
Identities = 35/178 (19%), Positives = 69/178 (38%), Gaps = 9/178 (5%)
Query: 134 LYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF 193
+ + ++ ++ + ++DV CG G + K +++G V +D
Sbjct: 26 FWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYK--AVGVDI 83
Query: 194 SENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVA 253
SE M+++ K+ +L+ ++ D+ LPF + +A+ A +L P A+
Sbjct: 84 SEVMIQKG----KERG--EGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALN 137
Query: 254 EISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311
EI R+L+S G + L + + N + E E L G
Sbjct: 138 EIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDV-VCNTMMPWEFEQLVKEQGFKV 194
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 95.7 bits (238), Expect = 1e-23
Identities = 33/207 (15%), Positives = 73/207 (35%), Gaps = 28/207 (13%)
Query: 145 RSGFPGPDEEEYFKSAQ----GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQ 200
++ P + K ++D G L Y ++ S+ L++
Sbjct: 3 KTIIRQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYK-TYGIEISDLQLKK 61
Query: 201 CYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRI 258
+F +++N L + + D+ +LPF + V++ + A+ EI R+
Sbjct: 62 AENFSRENN----FKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRV 117
Query: 259 LRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNY-------NYLTEEEIEDLCTSCGL-- 309
L+ GG+ + ++ LQ +Y++ EE + +
Sbjct: 118 LKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLF 177
Query: 310 --------TNYTSKVQQSFIMFAAQKP 328
N K++Q ++ + A+K
Sbjct: 178 KEDRVVERINDGLKIKQGYVDYIAEKF 204
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 8e-23
Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 17/151 (11%)
Query: 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 221
G V++ G+G F+ + ++ SE M + + +++
Sbjct: 48 EGRGVEIGVGTGRFAVPLKI------KIGVEPSERMAEIA-----RKR-----GVFVLKG 91
Query: 222 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTS-STSLT 280
LP D + P A+ E RIL+ GG + R +
Sbjct: 92 TAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYE 151
Query: 281 GRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311
+ +N + + EE+ DL G
Sbjct: 152 KNKEKSVFYKNARFFSTEELMDLMRKAGFEE 182
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 93.5 bits (232), Expect = 2e-22
Identities = 30/189 (15%), Positives = 56/189 (29%), Gaps = 23/189 (12%)
Query: 129 PFVSFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGV 188
+ + + G + +++ G+G + G
Sbjct: 17 AHPPEVAGQIATAMASAVHPKGE----------EPVFLELGVGTGRIALPLIARGYR--Y 64
Query: 189 VALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP 248
+ALD ML +Q + + +V+AD +P V V H P
Sbjct: 65 IALDADAAMLEVF----RQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDW 120
Query: 249 SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-------RILQNYNYLTEEEIE 301
+AE R+L+ GG + S R + + + +E+E
Sbjct: 121 PKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVE 180
Query: 302 DLCTSCGLT 310
+ GL
Sbjct: 181 EALRRLGLK 189
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 5e-22
Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 11/158 (6%)
Query: 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 221
G +++ CG G + AK+ + + ++D S L + + +++ N+ ++A
Sbjct: 38 GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI---KNVKFLQA 94
Query: 222 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG 281
++ LPF D + L SP A+ + ++L+ GG + G
Sbjct: 95 NIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEG 154
Query: 282 RVLRERILQNYNY--------LTEEEIEDLCTSCGLTN 311
+ E L +I L G
Sbjct: 155 KKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEK 192
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 3e-21
Identities = 35/174 (20%), Positives = 55/174 (31%), Gaps = 25/174 (14%)
Query: 132 SFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVAL 191
Y + + P G L++V G+G + R+ V +
Sbjct: 18 LGAYVIAEEERALKGLLP-----------PGESLLEVGAGTGYWLRRLPYPQ----KVGV 62
Query: 192 DFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNA 251
+ SE ML VRA LPF D V L
Sbjct: 63 EPSEAMLAVGRR--------RAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERV 114
Query: 252 VAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERIL--QNYNYLTEEEIEDL 303
+ E R+LR GG V + +L R+ + +L +L E+++ L
Sbjct: 115 LLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKAL 168
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 6e-21
Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 7/152 (4%)
Query: 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 221
++DV+ G G + FA VVA D +E++L+ FI+ + + V+
Sbjct: 38 NEEVLDVATGGGHVANAFAPFVKK--VVAFDLTEDILKVARAFIEGNGH---QQVEYVQG 92
Query: 222 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST--SL 279
D ++PF V A H +P+P++ V+E R+L+ GG + +
Sbjct: 93 DAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVF 152
Query: 280 TGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311
V +ER ++ + + + G
Sbjct: 153 YNYVEKERDYSHHRAWKKSDWLKMLEEAGFEL 184
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 8e-20
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 10/155 (6%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
G +VD+ CG G F R + G S V+ LD SE ML + + + + R
Sbjct: 43 GGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARA----RAAGP--DTGITYER 95
Query: 221 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT 280
AD+ +L D ++ ALH + + + L GG FV +T + +
Sbjct: 96 ADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARP 155
Query: 281 GRVLRERILQNY---NYLTEEEIEDLCTSCGLTNY 312
G + + + YL E + + G+ +
Sbjct: 156 GWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKH 190
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 85.7 bits (212), Expect = 1e-19
Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 11/156 (7%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
++D+ CG G A+ G V+ +D SE ML + K+ T + + +
Sbjct: 44 NQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTEA----KRKTT--SPVVCYEQ 96
Query: 221 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT 280
+ + + V + ALH S + ++ L+S G F+ + ++
Sbjct: 97 KAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQ 156
Query: 281 GRVLRERILQNY----NYLTEEEIEDLCTSCGLTNY 312
E + + Y E + Y
Sbjct: 157 DWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKY 192
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 1e-19
Identities = 23/177 (12%), Positives = 54/177 (30%), Gaps = 22/177 (12%)
Query: 139 WRQNFNRSGFPGPDEE---EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE 195
+ E + + G+++DV G+G ++ A G + L+ +
Sbjct: 16 AEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQ--IEGLEPAT 73
Query: 196 NMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL-HCWPS-PSNAVA 253
++ +Q + ++ + L + + A +L H P +A+
Sbjct: 74 RLVELA----RQTHP----SVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALV 125
Query: 254 EISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 310
+ + GG + +F S + V E+ + G
Sbjct: 126 ALRMAVEDGGGLL-MSFFSGPSLEPMYHPVAT------AYRWPLPELAQALETAGFQ 175
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 1e-19
Identities = 31/208 (14%), Positives = 67/208 (32%), Gaps = 24/208 (11%)
Query: 135 YERGWRQNFNRSGFPGPDEEEYFKSAQ---GGLLVDVSCGSGLFSRKFAKSGTYSGVVAL 191
Y+ + + E+ + G +++ G+G + K +G V +
Sbjct: 16 YDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRT--VYGI 73
Query: 192 DFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--S 249
+ S M K+ L ++ D + D + + A H +
Sbjct: 74 EPSREMRMIA----KEK---LPKEFSITEGDFLSFEVPTSI-DTIVSTYAFHHLTDDEKN 125
Query: 250 NAVAEISRILRSGGVFV--------GTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIE 301
A+A+ S++L GG V + + + G LQ Y ++
Sbjct: 126 VAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQ 185
Query: 302 DLCTSCGLT-NYTSKVQQSFIMFAAQKP 328
+ + G +T ++M A ++
Sbjct: 186 TIFENNGFHVTFTRLNHFVWVMEATKQL 213
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 2e-19
Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 7/151 (4%)
Query: 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 221
++D+ G+G + F+ + +D ++ M+ F ++ N+ +
Sbjct: 22 EHRVLDIGAGAGHTALAFSPYVQE--CIGVDATKEMVEVASSFAQEKGV---ENVRFQQG 76
Query: 222 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS--TSL 279
LPF D + A H + AV E++R+L+ G F+
Sbjct: 77 TAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEF 136
Query: 280 TGRVLRERILQNYNYLTEEEIEDLCTSCGLT 310
+ R R + + E + + ++ L
Sbjct: 137 VNHLNRLRDPSHVRESSLSEWQAMFSANQLA 167
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 2e-19
Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 13/106 (12%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
+ G++VD CG+G + + + + + +D + L++ + V
Sbjct: 17 KKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKE-----------VKEKFDSVI 63
Query: 221 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 266
VD + + H + ++E+ RIL+ G +
Sbjct: 64 TLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVI 109
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 85.0 bits (210), Expect = 3e-19
Identities = 46/255 (18%), Positives = 90/255 (35%), Gaps = 39/255 (15%)
Query: 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKP 120
FSCP+C++PL R+ + + C + + +K+ Y++L + +
Sbjct: 3 FSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDS 51
Query: 121 ASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFA 180
A R F+ + + R D+ + ++D+ CG G ++ FA
Sbjct: 52 AEMMQARRAFLDAGHYQPLRDAIVAQLRERLDD-------KATAVLDIGCGEGYYTHAFA 104
Query: 181 KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240
+ LD S+ ++ + A RLPF+ +DA+
Sbjct: 105 DALPEITTFGLDVSKVAIKAA--------AKRYPQVTFCVASSHRLPFSDTSMDAI---- 152
Query: 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV-----LRERILQNYNYL 295
+P E++R+++ GG + T L G + L +
Sbjct: 153 --IRIYAPCK-AEELARVVKPGGWVITATPGPRHLM-ELKGLIYNEVHLHAPHAEQLEGF 208
Query: 296 TEEEIEDLCTSCGLT 310
T ++ +LC L
Sbjct: 209 TLQQSAELCYPMRLR 223
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 6e-19
Identities = 37/198 (18%), Positives = 61/198 (30%), Gaps = 28/198 (14%)
Query: 134 LYERGWRQNFNRSGFPGPDEEEYFKSAQ---------------GGLLVDVSCGSGLFSRK 178
+ R W +N + + + A G ++DV CG G + +
Sbjct: 19 PFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVR 78
Query: 179 FAKSGTYSG--VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236
A V + S + Q L + + AD LPF DAV
Sbjct: 79 LAT---ARDVRVTGISISRPQVNQANARATAAG--LANRVTFSYADAMDLPFEDASFDAV 133
Query: 237 HA-GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNY--- 292
A + H P A+ E++R+LR GG F+ + + +
Sbjct: 134 WALESLHH-MPDRGRALREMARVLRPGGTVAIADFVL-LAPVEGAKKEAVDAFRAGGGVL 191
Query: 293 NYLTEEEIEDLCTSCGLT 310
+ +E E L
Sbjct: 192 SLGGIDEYESDVRQAELV 209
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 1e-18
Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Query: 144 NRSGFPGPDEE-EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQC 201
+R P++ + F +G ++DV G+G + +K G V A+D E M+
Sbjct: 19 SRLELFDPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYA 78
Query: 202 YDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRS 261
++ + + N+ +++++ ++P VD + H P + E+ R+ +
Sbjct: 79 WEKVNKLGL---KNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKP 135
Query: 262 GGVFV 266
Sbjct: 136 FAYLA 140
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 3e-18
Identities = 33/179 (18%), Positives = 60/179 (33%), Gaps = 32/179 (17%)
Query: 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 221
G ++++ CG+G + +G + V A D S + + + +
Sbjct: 44 GAKILELGCGAGYQAEAMLAAG-FD-VDATDGSPELAAEASRRLGRPV---------RTM 92
Query: 222 DVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSL 279
+L + DAV A A L P ++ + I R L+ GG+F +
Sbjct: 93 LFHQLDAIDAY-DAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDK 151
Query: 280 TGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS----------KVQQSFIMFAAQKP 328
R YNY +EE + G + + F+ + +KP
Sbjct: 152 LARY--------YNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQELAQFLHVSVRKP 202
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 5e-18
Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 13/165 (7%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
+ G ++D++CG G FS G + VV +D SE+M+R+ ++ K SN+ +
Sbjct: 38 KRGKVLDLACGVGGFSFLLEDYG-FE-VVGVDISEDMIRKAREYAKSRE----SNVEFIV 91
Query: 221 ADVCRLPFASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSSTS 278
D +L F D V ++ + + E+ R+L+ G F+
Sbjct: 92 GDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPR 151
Query: 279 LTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMF 323
L+E ++ Y + I D + + S+ + F
Sbjct: 152 -----LKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRF 191
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 7e-18
Identities = 26/160 (16%), Positives = 48/160 (30%), Gaps = 19/160 (11%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
Q ++D+ CG G R A G V +D ++ + + +
Sbjct: 52 QPERVLDLGCGEGWLLRALADRG--IEAVGVDGDRTLVDAA----RAAGAGEVHLASYAQ 105
Query: 221 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT----------F 270
++P + D + A AL ++ + +L GG V T +
Sbjct: 106 LAEAKVPVGKDY-DLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDY 163
Query: 271 LRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 310
S G + + Y + T + GL
Sbjct: 164 QDGWREESFAGFAGDWQPMPWY-FRTLASWLNALDMAGLR 202
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 80.0 bits (197), Expect = 8e-18
Identities = 30/179 (16%), Positives = 56/179 (31%), Gaps = 23/179 (12%)
Query: 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 219
G +++++ G+G ++R + V ALD S M+ + N+
Sbjct: 45 NIRGDVLELASGTGYWTRHLSGLADR--VTALDGSAEMIAEA-------GRHGLDNVEFR 95
Query: 220 RADVCRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFL----RY 273
+ D+ + DAV L P + + GGV R
Sbjct: 96 QQDLFDWTPDRQW-DAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRL 154
Query: 274 TSSTSLTGRVLRERILQN-------YNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAA 325
V R LQ+ + + E+ + T+ G + +V F+
Sbjct: 155 EQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVDEVHPGFLYATC 213
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 9e-18
Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 19/153 (12%)
Query: 166 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 225
+D+ CG+G + K A+SG V+ D + M+ + +Q+ +L AD
Sbjct: 62 LDLGCGTGQLTEKIAQSGAE--VLGTDNAATMIEKA----RQN----YPHLHFDVADARN 111
Query: 226 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT--GRV 283
DAV + A LH P A+A I + L+SGG FV + L
Sbjct: 112 FRVDKPL-DAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNA 170
Query: 284 LRERILQN------YNYLTEEEIEDLCTSCGLT 310
L + N + + + E ++ G
Sbjct: 171 LETLGIHNPQALNPWYFPSIGEYVNILEKQGFD 203
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 1e-17
Identities = 26/218 (11%), Positives = 67/218 (30%), Gaps = 37/218 (16%)
Query: 132 SFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVAL 191
++ + + + + ++D+ G+GL S + + +
Sbjct: 25 IPCFDDFYGVSVSIASVDTE----------NPDILDLGAGTGLLSAFLMEKYPEATFTLV 74
Query: 192 DFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--S 249
D SE ML + + + + + AD + F + D V + ++H
Sbjct: 75 DMSEKMLEIAKNRFRGN-----LKVKYIEADYSKYDFEEKY-DMVVSALSIHHLEDEDKK 128
Query: 250 NAVAEISRILRSGGVFVGTTFLRYTSS------TSLTGRVLR------ERILQNYNY--- 294
IL+ G+F+ + ++ ++ + + E I Y
Sbjct: 129 ELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKL 188
Query: 295 ---LTEEEIEDLCTSCGLTNYTSKVQQ-SFIMFAAQKP 328
+ + + G + + + F + +K
Sbjct: 189 DKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKT 226
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 2e-17
Identities = 26/151 (17%), Positives = 51/151 (33%), Gaps = 8/151 (5%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
+ L+ D+ CG+G + A T V LDF + +Q L + + +
Sbjct: 46 EKSLIADIGCGTGGQTMVLAGHVTGQ-VTGLDFLSGFIDIFNRNARQSG--LQNRVTGIV 102
Query: 221 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT 280
+ LPF + +D + + A++ + E + L+ GG + +T
Sbjct: 103 GSMDDLPFRNEELDLIWSEGAIYNIGFE-RGLNEWRKYLKKGGYLAVSECSWFTDERP-- 159
Query: 281 GRVLRERILQNY-NYLTEEEIEDLCTSCGLT 310
+ + + Y T G
Sbjct: 160 -AEINDFWMDAYPEIDTIPNQVAKIHKAGYL 189
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 80.0 bits (197), Expect = 2e-17
Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 6/114 (5%)
Query: 154 EEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTIL 212
+K + +VD CG G +D E +L + + +
Sbjct: 15 NTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--- 71
Query: 213 TSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 266
+ + D + + D A L +P + ++ ++ GG +
Sbjct: 72 -YDSEFLEGDATEIELNDKY-DIAICHAFLLHMTTPETMLQKMIHSVKKGGKII 123
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 4e-17
Identities = 33/199 (16%), Positives = 65/199 (32%), Gaps = 20/199 (10%)
Query: 119 KPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGL-----LVDVSCGSG 173
S F F+ ++ RQ G P+ S L + D+ CG+G
Sbjct: 4 NNTSIHDFDFSFICNYFKLLKRQ-----GPGSPEATRKAVSFINELTDDAKIADIGCGTG 58
Query: 174 LFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 232
+ A G + +D + + + + N + + + LPF +
Sbjct: 59 GQTLFLAD--YVKGQITGIDLFPDFIEIFNENAVKAN--CADRVKGITGSMDNLPFQNEE 114
Query: 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNY 292
+D + + A++ + E S+ L+ GG + +TS + + + Y
Sbjct: 115 LDLIWSEGAIYN-IGFERGMNEWSKYLKKGGFIAVSEASWFTSERP---AEIEDFWMDAY 170
Query: 293 NYL-TEEEIEDLCTSCGLT 310
+ D G T
Sbjct: 171 PEISVIPTCIDKMERAGYT 189
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 4e-17
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 221
++D+ G+G +S + G VV +D S+ ML + ++ +V A
Sbjct: 55 PCRVLDLGGGTGKWSLFLQERGFE--VVLVDPSKEMLEVAREKGVKN---------VVEA 103
Query: 222 DVCRLPFASGFVDAVHA-GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT 274
LPF SG +AV A G L + A +EI R+L G+ + T YT
Sbjct: 104 KAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYT 157
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 4e-16
Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 16/146 (10%)
Query: 126 FRSPFVSFLYERGWRQNFNRSGFPGPDEEEYFKSA--QGGLLVDVSCGSGLFSRKFAKSG 183
+P S Y + WR +G E + +G ++D CG G +K G
Sbjct: 10 DNNPAHSENYAQRWRN-LAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQG 68
Query: 184 TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 243
+ V+ D ++ KQD V D+ + D + + +
Sbjct: 69 -HD-VLGTDLDPILIDYA----KQDF----PEARWVVGDLSVDQISETDFDLIVSAGNVM 118
Query: 244 CWPSPSN---AVAEISRILRSGGVFV 266
+ + A+A I R L + G V
Sbjct: 119 GFLAEDGREPALANIHRALGADGRAV 144
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 1e-15
Identities = 31/201 (15%), Positives = 67/201 (33%), Gaps = 30/201 (14%)
Query: 134 LYERGW-RQNFNRSGFPGPDEEEYFKSAQ-------------------GGLLVDVSCGSG 173
Y W ++ + + P +++ + A +D+ G G
Sbjct: 35 FYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYG 94
Query: 174 LFSRKFAKSGTYSG--VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 231
+R + G + L+ + ++ ++ Q L N+ + +P
Sbjct: 95 GAARFLVR---KFGVSIDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFLEIPCEDN 149
Query: 232 FVDAVHA-GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQ 290
D + + A LH P E +R+L+ GV T ++ + + + +RI
Sbjct: 150 SYDFIWSQDAFLHS-PDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKL 208
Query: 291 NYNYLTEEEIEDLCTSCGLTN 311
++ + L CGL
Sbjct: 209 -HDMGSLGLYRSLAKECGLVT 228
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 2e-15
Identities = 30/187 (16%), Positives = 63/187 (33%), Gaps = 21/187 (11%)
Query: 134 LYERGWRQNFNRSGFPGPDEEEYFKSAQGGL-----LVDVSCGSGLFSRKFAKSGTYSG- 187
+YE + +N+ SG G + + + L ++D+ G G + G
Sbjct: 26 VYEFIFGENYISSG--GLEATKKI-LSDIELNENSKVLDIGSGLGGGCMYINE---KYGA 79
Query: 188 -VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA-GAALHC- 244
+D N++ + + + D+ F D +++ A L
Sbjct: 80 HTHGIDICSNIVNMA-----NERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALS 134
Query: 245 WPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLC 304
+ + + + L+ G + T + T + + Y +T EE D+
Sbjct: 135 LENKNKLFQKCYKWLKPTGTLLITDYCA-TEKENWDDEFKEYVKQRKYTLITVEEYADIL 193
Query: 305 TSCGLTN 311
T+C N
Sbjct: 194 TACNFKN 200
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 3e-15
Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 9/117 (7%)
Query: 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSN 215
+ + LLVDV CG G + + A+ ++ D S M++ + N
Sbjct: 32 YHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTY-KN 90
Query: 216 LALVRADVCRLPFAS------GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 266
++ + F +D + A H W LR G
Sbjct: 91 VSFKISSSDDFKFLGADSVDKQKIDMITAVECAH-WFDFEKFQRSAYANLRKDGTIA 146
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 1e-14
Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 7/115 (6%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLAL 218
+ ++D+ CGSG S + A G V +D + +R + N
Sbjct: 30 EDDEILDIGCGSGKISLELASKG--YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEF 87
Query: 219 VRADVCRLPFASGFVDAVHAGAALHCWPSPSN---AVAEISRILRSGGVFVGTTF 270
+ L F D A L P P + E+ R+L+ G F
Sbjct: 88 KVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 5e-14
Identities = 22/155 (14%), Positives = 44/155 (28%), Gaps = 19/155 (12%)
Query: 166 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 225
D+ CG G + + + +D ++ML + N +AD+
Sbjct: 38 YDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKA----AD----RLPNTNFGKADLAT 89
Query: 226 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF----------LRYTS 275
A D ++A A P ++++ L SGGV + T+
Sbjct: 90 WKPAQKA-DLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETA 148
Query: 276 STSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 310
L+ + + +
Sbjct: 149 DGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSSR 183
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 1e-13
Identities = 20/130 (15%), Positives = 35/130 (26%), Gaps = 24/130 (18%)
Query: 145 RSGFPGPDEEEYFKSAQGGLLV------DVSCGSGLFSRKFAKSGTYSGVVALDFSENML 198
GPD E F LL + CG G + +F A DFS +L
Sbjct: 26 ARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQAAR--WAAYDFSPELL 83
Query: 199 RQCYDFIKQDNTILTSNLALVRADV-CRLPFA-SGFVDAVHAGAALHCWPSPSNAVAEIS 256
+ + + + LP + P++ + +
Sbjct: 84 KLARA--------NAPHADVYEWNGKGELPAGLGAPFGLIV------SRRGPTSVILRLP 129
Query: 257 RILRSGGVFV 266
+ F+
Sbjct: 130 ELAAPDAHFL 139
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 68.2 bits (166), Expect = 4e-13
Identities = 29/189 (15%), Positives = 55/189 (29%), Gaps = 25/189 (13%)
Query: 162 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
G ++ V CG S +V +D+ L L + L R
Sbjct: 119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA--LAGQITLHR 176
Query: 221 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVA---EISRILRSGGVFVGTTFLRYTSST 277
D +L G+ D + + P + + L+ GG V + + +
Sbjct: 177 QDAWKLDTREGY-DLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALS 235
Query: 278 S--------------LTGRVLRERILQNY--NYLTEEEIEDLCTSCGLTN--YTSKVQQS 319
+++ R++Q T + G T+ + +
Sbjct: 236 PDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRARL 295
Query: 320 FIMFAAQKP 328
F A+KP
Sbjct: 296 FPTVIARKP 304
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 68.6 bits (167), Expect = 4e-13
Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 12/164 (7%)
Query: 162 GGLLVDVSCGSGLFSRKFAK-SGTYSGVVALDFSENML-----RQCYDFIKQDNTILTSN 215
G ++D+ CG+G +K G + V+ +D +N L Y K + SN
Sbjct: 84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSN 143
Query: 216 LALVRADV------CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269
+ ++ + VD V + + + EI R+LR GG +
Sbjct: 144 VRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSD 203
Query: 270 FLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313
+ + L E+ L G +
Sbjct: 204 VYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVR 247
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 1e-12
Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 21/121 (17%)
Query: 167 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 226
+ CG+ S + G + V ++D+S ++ L DV +L
Sbjct: 48 VLGCGNSALSYELFLGG-FPNVTSVDYSSVVVAAMQACYAHVP-----QLRWETMDVRKL 101
Query: 227 PFASGFVDAVHAGAALHC---------------WPSPSNAVAEISRILRSGGVFVGTTFL 271
F S D V L + ++E+SR+L GG F+ T
Sbjct: 102 DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161
Query: 272 R 272
Sbjct: 162 A 162
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 1e-12
Identities = 30/206 (14%), Positives = 64/206 (31%), Gaps = 28/206 (13%)
Query: 139 WRQNFNRSGFPGPDE-----EEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF 193
W + F++S + E G ++ ++ G G + A G Y V A+D
Sbjct: 2 WDERFSQSEYVYGTEPNDFLVSVANQIPQGKILCLAEGEGRNACFLASLG-YE-VTAVDQ 59
Query: 194 SENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVA 253
S L + ++ + V++++ + + + +
Sbjct: 60 SSVGLAKAKQLAQEKG----VKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYP 115
Query: 254 EISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313
++ + L+ GGVF+ F + TG +L E ++ S
Sbjct: 116 KVYQGLKPGGVFILEGFAPEQLQYN-TGGPKDLDLL-----PKLETLQSELPSLNWLIAN 169
Query: 314 SKV-----------QQSFIMFAAQKP 328
+ + + I QK
Sbjct: 170 NLERNLDEGAYHQGKAALIQLLGQKL 195
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-12
Identities = 27/159 (16%), Positives = 51/159 (32%), Gaps = 12/159 (7%)
Query: 149 PGPDEEEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK 206
P P+ + G + D+ CG+G + A V +D SE ML +
Sbjct: 19 PYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLADHYE---VTGVDLSEEMLEIAQEKAM 75
Query: 207 QDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSN---AVAEISRILRSGG 263
+ N ++ D+ L +L+ + ++ +R+L GG
Sbjct: 76 ETN----RHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGG 131
Query: 264 VFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIED 302
+ Y T G+ Q+ + E+
Sbjct: 132 KLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEE 170
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 4e-12
Identities = 30/172 (17%), Positives = 52/172 (30%), Gaps = 18/172 (10%)
Query: 135 YERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS 194
E + + + E K + G +D+ CG+G S A +G Y V A D +
Sbjct: 7 DENYFTDKYE-LTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG-YD-VDAWDKN 63
Query: 195 ENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAV 252
+ +N NL D+ L F + D + + L + +
Sbjct: 64 AMSIANVERIKSIEN---LDNLHTRVVDLNNLTFDRQY-DFILSTVVLMFLEAKTIPGLI 119
Query: 253 AEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLC 304
A + R + GG + + G E E+
Sbjct: 120 ANMQRCTKPGGYNLIVAAMDTADYPCTVGF---------PFAFKEGELRRYY 162
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 4e-12
Identities = 21/173 (12%), Positives = 51/173 (29%), Gaps = 21/173 (12%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
+D G G +++ + V +D +E+ L Q ++ ++
Sbjct: 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGK---RVRNYFC 134
Query: 221 ADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTS 278
+ D + + + + LR G+ V + +
Sbjct: 135 CGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIV------IKDNMA 188
Query: 279 LTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSF-------IMFA 324
G +L + + + + + S GL+ + Q++ FA
Sbjct: 189 QEGVILDDV--DSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYSFA 239
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 7e-12
Identities = 16/179 (8%), Positives = 38/179 (21%), Gaps = 22/179 (12%)
Query: 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 214
+D G G ++ Y+ L+ ++ML + +
Sbjct: 87 ASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM-----P 140
Query: 215 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 272
+ A + D + + L G
Sbjct: 141 VGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS 200
Query: 273 YTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSF-------IMFA 324
+ + ++ + L G+ Q+ + M+A
Sbjct: 201 TGDRFLV-------DKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEWPTDLFPLKMYA 252
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 6e-11
Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 26/150 (17%)
Query: 135 YERGWRQNFNRSGFPGPDEEEYFKSAQ-----------GGLLVDVSCGSGLFSRKFAKSG 183
+E+ W + S D L+D +CG+G ++ ++
Sbjct: 19 WEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFF 78
Query: 184 TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA-----VHA 238
V+ LD S++ L ++NT +N++ D A+ ++
Sbjct: 79 --PRVIGLDVSKSALEIA----AKENT--AANISYRLLDGLVPEQAAQIHSEIGDANIYM 130
Query: 239 GAALHCWPSP--SNAVAEISRILRSGGVFV 266
H P + +L G
Sbjct: 131 RTGFHHIPVEKRELLGQSLRILLGKQGAMY 160
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 8e-11
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 214
+ + ++D++CG+G+ + + A+ G Y VV LD E MLR K+ N
Sbjct: 35 KEDAKREVRRVLDLACGTGIPTLELAERG-YE-VVGLDLHEEMLRVARRKAKERN----L 88
Query: 215 NLALVRADVCRLPFASGFVDAVHA-GAALHCWPSPSN--AVAEISRILRSGGVFV 266
+ ++ DV + F + F DAV + + + ++++ L+ GGVF+
Sbjct: 89 KIEFLQGDVLEIAFKNEF-DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 9e-11
Identities = 27/188 (14%), Positives = 60/188 (31%), Gaps = 29/188 (15%)
Query: 134 LYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF 193
LYE +N P+ ++ K + ++D+ C SG ++GT V ++
Sbjct: 9 LYEEKSGHYYNA---VNPNLLKHIKK-EWKEVLDIGCSSGALGAAIKENGTR--VSGIEA 62
Query: 194 SENML---RQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSN 250
++ D + + + +P+ D V G L P
Sbjct: 63 FPEAAEQAKEKLDHVVLGDI-----------ETMDMPYEEEQFDCVIFGDVLEHLFDPWA 111
Query: 251 AVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNY--------NYLTEEEIED 302
+ ++ ++ GV + + + + L + Y + T E+
Sbjct: 112 VIEKVKPYIKQNGVILASI-PNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLR 170
Query: 303 LCTSCGLT 310
+ G +
Sbjct: 171 MFLKAGYS 178
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 2e-10
Identities = 28/202 (13%), Positives = 56/202 (27%), Gaps = 44/202 (21%)
Query: 151 PDEEEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD 208
+ E+ G +++++ G G + F G + V AL+ S ++L + +
Sbjct: 70 SEAREFATRTGPVSGPVLELAAGMGRLTFPFLDLG-WE-VTALELSTSVLAAFRKRLAEA 127
Query: 209 NTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS---NAVAEISRILRSGGVF 265
+ LV+ D+ F V + + A + L GG F
Sbjct: 128 PADVRDRCTLVQGDMSAFALDKRF-GTVVISSGSINELDEADRRGLYASVREHLEPGGKF 186
Query: 266 VGTTFLRY-------TSSTSLTGRVLRERILQNYN------------------------- 293
+ + + L GR R +L +
Sbjct: 187 LLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPADETTDPFVVCT 246
Query: 294 ----YLTEEEIEDLCTSCGLTN 311
L +++ G
Sbjct: 247 HRRRLLAPDQVVRELVRSGFDV 268
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 2e-10
Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 11/110 (10%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
+D++CG+G + + A+D S+ ML + + + L
Sbjct: 37 VFDDYLDLACGTGNLTENLCPKF-KN-TWAVDLSQEMLSEAENKFRSQG----LKPRLAC 90
Query: 221 ADVCRLPFASGFVDAVH-AGAALHCWPSPS---NAVAEISRILRSGGVFV 266
D+ L F D + + + +S L+ GGVF+
Sbjct: 91 QDISNLNINRKF-DLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI 139
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 6e-10
Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 4/118 (3%)
Query: 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN--TIL 212
KS ++D+ CG G K ++ + +D S ++L + D +K D +
Sbjct: 23 AVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQ 82
Query: 213 TSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGT 268
++L ++ + DA + + R V V T
Sbjct: 83 RKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST 140
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 2e-09
Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 14/128 (10%)
Query: 167 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 226
++ C +G F+ K A + +D + + T S+++ D+ +
Sbjct: 57 EIGCAAGAFTEKLAPHCKR--LTVIDVMPRAIGRA-----CQRTKRWSHISWAATDILQF 109
Query: 227 PFASGFVDAVHAGAALHCWPSPS---NAVAEISRILRSGG-VFVGTTFLRYTSSTSLTGR 282
A F D + L+ + A+ + ++L GG + G+ R +
Sbjct: 110 STAELF-DLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS--ARDATCRRWGHV 166
Query: 283 VLRERILQ 290
E ++
Sbjct: 167 AGAETVIT 174
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 3e-09
Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 15/110 (13%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
+ L+DV+CG+G+ R A S + V L+ S +ML ++ N + L
Sbjct: 50 KAASLLDVACGTGMHLRHLADSF-GT-VEGLELSADMLAIA----RRRN----PDAVLHH 99
Query: 221 ADVCRLPFASGFVDAVH-AGAALHCWPSPS---NAVAEISRILRSGGVFV 266
D+ F AV +++ + A+ + + GV V
Sbjct: 100 GDMRDFSLGRRF-SAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVV 148
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 4e-09
Identities = 26/155 (16%), Positives = 51/155 (32%), Gaps = 27/155 (17%)
Query: 115 YTEVKPASTELFRSPFVSF-LYERGWRQNFNRSGFPGPDE--EEYFKSAQGGLLVDVSCG 171
Y+ A+ LF+ +F LY RG++ + D + + ++ D CG
Sbjct: 18 YSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCG 77
Query: 172 SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 231
+ C+D D + D+ ++P
Sbjct: 78 DCRLASSIRNPVH----------------CFDLASLDPRV-------TVCDMAQVPLEDE 114
Query: 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 266
VD +L + + + E +R+L+ GG+
Sbjct: 115 SVDVAVFCLSLM-GTNIRDFLEEANRVLKPGGLLK 148
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 4e-09
Identities = 18/169 (10%), Positives = 47/169 (27%), Gaps = 16/169 (9%)
Query: 167 DVSCGSGLFSRKFAK------SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
+ G+G + G ++ S + + + + + + + A +
Sbjct: 58 SIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHK 117
Query: 221 ADV------CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT 274
D +H L+ + +L + + +
Sbjct: 118 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV-SGS 176
Query: 275 SSTSLTGRVLRERILQN--YNYLTEEEIEDLCTSCGLTNYTSKVQQSFI 321
S + R Q+ Y+T +++ + + GL Y S +
Sbjct: 177 SGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLK-YECYDLLSTM 224
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 4e-09
Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 4/118 (3%)
Query: 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTIL 212
K + ++D+ CG G + K + + +D S L + + +
Sbjct: 23 AALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQ 82
Query: 213 TSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGT 268
L L++ + DA + + + V V T
Sbjct: 83 WERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT 140
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 4e-09
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 15/110 (13%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
+ L+DV+CG+G F K L+ SE+ML ++ + L +
Sbjct: 40 EASSLLDVACGTGTHLEHFTKEF-GD-TAGLELSEDMLTHA----RKRL----PDATLHQ 89
Query: 221 ADVCRLPFASGFVDAVH-AGAALHCWPSPS---NAVAEISRILRSGGVFV 266
D+ F AV +++ + AVA + L GGV V
Sbjct: 90 GDMRDFRLGRKF-SAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVV 138
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 6e-09
Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 16/156 (10%)
Query: 124 ELFRSPFVSFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSG 183
+ + + +++ +R+ + ++DV+CG+G+ S + G
Sbjct: 20 DQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEG 79
Query: 184 TYSGVVALDFSENML---RQCYDFIKQDNTILTSNLALVRADVC--RLPFASGFVDAV-H 237
+S V ++D S+ ML + +++ + +P GF DAV
Sbjct: 80 -FS-VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGF-DAVIC 136
Query: 238 AGAALHCWPSPSN-------AVAEISRILRSGGVFV 266
G + P A+ I+ ++R GG+ V
Sbjct: 137 LGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 1e-08
Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 8/108 (7%)
Query: 167 DVSCGSGLFSRKFAKSGTYSG-VVALDFSEN------MLRQCYDFIKQDNTILTSNLALV 219
++ CG G S A SG V +D + L Q ++ + +
Sbjct: 49 EIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFN 108
Query: 220 RADVCRL-PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 266
L P A D V +L + S + +
Sbjct: 109 TNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVD 156
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 8e-08
Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 13/116 (11%)
Query: 162 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
G +VD +CG+G + A +G V D + + + N L + L++
Sbjct: 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN--LIDRVTLIK 80
Query: 221 ADVCR-LPFASGFVDAVHAGAALHCWP---------SPSNAVAEISRILRSGGVFV 266
+ V AV + A+++ +L +GG+
Sbjct: 81 DGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIIT 136
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 2e-07
Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 11/146 (7%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
+G ++D+ CG G K+ ++G +D +E + +
Sbjct: 64 RGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQD 122
Query: 221 ADVCRLPFASGFVDAVHAGAALHCWPSPS----NAVAEISRILRSGGVFVGTTFLRYTSS 276
+ + F D + + + H S S A I+R LR GG F+ T R
Sbjct: 123 SYGRHMDLGKEF-DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDV-- 179
Query: 277 TSLTGRVLRERILQNYNYLTEEEIED 302
++ + N Y E E +
Sbjct: 180 ---ILERYKQGRMSNDFYKIELEKME 202
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 4e-07
Identities = 26/199 (13%), Positives = 61/199 (30%), Gaps = 13/199 (6%)
Query: 135 YERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS 194
+ + + D + K ++D+ CG G S + G V + D +
Sbjct: 94 KKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLG--YDVTSWDHN 151
Query: 195 ENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNA--V 252
EN + + +++N N++ D+ + D + + +
Sbjct: 152 ENSIAFLNETKEKENL----NISTALYDINAANIQENY-DFIVSTVVFMFLNRERVPSII 206
Query: 253 AEISRILRSGGVFVGTTFLRY--TSSTSLTGRVLRERILQNY--NYLTEEEIEDLCTSCG 308
+ GG + + E L+ Y ++ E E++
Sbjct: 207 KNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKDWEFLEYNENMGELHK 266
Query: 309 LTNYTSKVQQSFIMFAAQK 327
++++ F A+K
Sbjct: 267 TDENGNRIKMKFATMLARK 285
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 6e-07
Identities = 18/132 (13%), Positives = 45/132 (34%), Gaps = 15/132 (11%)
Query: 153 EEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL 212
+ + + ++ + G+G K+ + +VA D + + + + + N+ +
Sbjct: 40 SKTFLDDSNKRKVLAIDFGNGADLEKYFYGEI-ALLVATDPDADAIARGNERYNKLNSGI 98
Query: 213 TSNLALVRADVC-----------RLPFASGFVDAVHAGAALH-CWPSP--SNAVAEISRI 258
+ R F G + + A+H + + + +S +
Sbjct: 99 KTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSEL 158
Query: 259 LRSGGVFVGTTF 270
SGG + TT
Sbjct: 159 TASGGKVLITTM 170
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-06
Identities = 22/156 (14%), Positives = 51/156 (32%), Gaps = 23/156 (14%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC---YDFIKQDNTILTSNLA 217
++D+ CG G F + G + +D +E+M++ C ++ +K D L
Sbjct: 41 GCRRVLDIGCGRGEFLELCKEEGIE--SIGVDINEDMIKFCEGKFNVVKSD---AIEYLK 95
Query: 218 LVRADVCRLPFASGFVDAVHAGAAL-HCW-PSPSNAVAEISRILRSGGVFVGTTFLRYTS 275
++D V + H ++ ++ V + +
Sbjct: 96 ---------SLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIES----PN 142
Query: 276 STSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311
TSL + + + E ++ + G +
Sbjct: 143 PTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRD 178
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 1e-06
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 8/123 (6%)
Query: 154 EEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF-IKQDNTIL 212
E + +D+ G G K A + + + +D + L IK+ +
Sbjct: 18 TEIIGQF-DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGG 76
Query: 213 TSNLALVRADVCRLPFA-SGFVDAVHA----GAALHCWPSPSNAV-AEISRILRSGGVFV 266
SN+ V A LPF D++ G L P+ + + ++ + + F
Sbjct: 77 LSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFE 136
Query: 267 GTT 269
T
Sbjct: 137 FVT 139
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 2e-06
Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 6/120 (5%)
Query: 155 EYFKSAQGGLLVDVSCGSGLFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILT 213
++ + + LVD CGSG + ++ +D S L + +
Sbjct: 715 KHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEA 774
Query: 214 SNLA---LVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGT 268
N+ L + VD + ++ + + V T
Sbjct: 775 CNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVST 834
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 5e-06
Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 9/144 (6%)
Query: 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVV-ALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
G ++ + SG + + G + ++F+ ++R ++ N+ +
Sbjct: 78 GDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD-----RRNIFPIL 132
Query: 221 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRI-LRSGGVFVGTTFLRYTSSTSL 279
D V+ V A P + V +R LR GG + R T+
Sbjct: 133 GDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTE 192
Query: 280 TGRVLRE--RILQNYNYLTEEEIE 301
V + + L + ++ +
Sbjct: 193 PSEVYKREIKTLMDGGLEIKDVVH 216
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 8e-06
Identities = 21/152 (13%), Positives = 51/152 (33%), Gaps = 12/152 (7%)
Query: 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 214
+ + ++ + +G A V A++++ ++R+ D +
Sbjct: 68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-----E 122
Query: 215 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNA---VAEISRILRSGGVFVGTTFL 271
N+ + D + + V+ V P+ A + L+ GG +
Sbjct: 123 NIIPILGDANKPQEYANIVEKVD--VIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKA 180
Query: 272 RYTSSTSLTGRVLRE--RILQNYNYLTEEEIE 301
R T + +E IL+ + +E++
Sbjct: 181 RSIDVTKDPKEIFKEQKEILEAGGFKIVDEVD 212
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 8e-06
Identities = 19/195 (9%), Positives = 47/195 (24%), Gaps = 31/195 (15%)
Query: 127 RSPFVSFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYS 186
+F ++ + + G L+++ G F+ + + +
Sbjct: 18 HKYAYNFDFDVMHPFMVRA----------FTPFFRPGNLLELGSFKGDFTSRLQEHF--N 65
Query: 187 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWP 246
+ ++ SE + L + + + + D + L
Sbjct: 66 DITCVEASEEAISHA-------QGRLKDGITYIHSRFEDAQLPRRY-DNIVLTHVLEHID 117
Query: 247 SPSNAVAEI-SRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYN----------YL 295
P + I L GG S + ++
Sbjct: 118 DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTY 177
Query: 296 TEEEIEDLCTSCGLT 310
+ +E + GL
Sbjct: 178 ALDTLERDASRAGLQ 192
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 2e-05
Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 13/128 (10%)
Query: 151 PDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT 210
E E +S +++DV G G K A+ VVALD ++ + +
Sbjct: 17 DAEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPA 76
Query: 211 ILT-SNLALVRADVCRLPFASGFVDAVHAGAALHCWP--------SPSNAVAEISRILRS 261
NL + A RLP SG V +H L W S + ++ + R
Sbjct: 77 KGGLPNLLYLWATAERLPPLSG-VGELHV---LMPWGSLLRGVLGSSPEMLRGMAAVCRP 132
Query: 262 GGVFVGTT 269
G F+
Sbjct: 133 GASFLVAL 140
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 4e-05
Identities = 51/322 (15%), Positives = 91/322 (28%), Gaps = 105/322 (32%)
Query: 24 NSP-RLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGA 82
S + +LR T+ + + + + L + PI E + P+ +T
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ---RQPSMMT--R 110
Query: 83 IYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQN 142
+Y R D+ Y+ + V S L+ Y +++ A EL + V +
Sbjct: 111 MYIE---QR--DRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNV-LID------- 156
Query: 143 FNRSGFPGPDEEEYF-KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS------- 194
G G K+ + C S K + L+
Sbjct: 157 ----GVLG------SGKTW----VALDVCLSYKVQCKMD-----FKIFWLNLKNCNSPET 197
Query: 195 --ENMLRQCYDFIKQ--------DNTILTSNLA-----------------LVRADVCRLP 227
E + + Y N L + LV +V
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 228 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVLRE 286
+ F L C +IL + TT R+ T L+
Sbjct: 258 AWNAF--------NLSC------------KIL------L-TT--RFKQVTDFLSAATTTH 288
Query: 287 RILQNYNY-LTEEEIEDLCTSC 307
L +++ LT +E++ L
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKY 310
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 8e-05
Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 4/102 (3%)
Query: 165 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 224
++D+ GSG +A+ + +D S Q ++ ++ + + D
Sbjct: 40 ILDLGSGSGEMLCTWARDHGIT-GTGIDMSSLFTAQAKRRAEELG--VSERVHFIHNDAA 96
Query: 225 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 266
D A + A +++ L+ GG+ +
Sbjct: 97 GYVANEKC-DVAACVGATWIAGGFAGAEELLAQSLKPGGIML 137
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 9e-05
Identities = 22/115 (19%), Positives = 33/115 (28%), Gaps = 15/115 (13%)
Query: 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 221
++VD + G+G + A V A D E L + + N L+
Sbjct: 23 ESIVVDATMGNGNDTAFLAGLSKK--VYAFDVQEQALGKTSQRLSDLG---IENTELILD 77
Query: 222 DVCRLP-------FASGFVDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFV 266
L A+ F A P A+ +I L GG
Sbjct: 78 GHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLA 132
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 1e-04
Identities = 27/157 (17%), Positives = 45/157 (28%), Gaps = 26/157 (16%)
Query: 133 FLYERGWRQNFNRSGFPGPDEEEYFKSAQ-------------GGLLVDVSCGSGLFSRKF 179
G ++ E +SAQ LVD CG G
Sbjct: 77 DRAALGDPEHSEYEKKV-IAELHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMA 135
Query: 180 AKSGTYSG--VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237
+ G V + S ++ + ++ ++ PF G V A
Sbjct: 136 HR---RFGSRVEGVTLSAAQADFGNRRARELR--IDDHVRSRVCNMLDTPFDKGAVTASW 190
Query: 238 A-GAALHC-WPSPSNAVAEISRILRSGGVFVGTTFLR 272
+ ++ +E SR L+ GG +V T
Sbjct: 191 NNESTMYVDLHD---LFSEHSRFLKVGGRYVTITGCW 224
|
| >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244 | Back alignment and structure |
|---|
Score = 40.3 bits (93), Expect = 4e-04
Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 8/146 (5%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGV--VALDFSENMLRQCYDFIKQDNTILTSNLAL 218
+ D+ C G + ++ V + +D S+ M+ +C I + S + +
Sbjct: 58 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH----SEIPV 113
Query: 219 VRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSS 276
V L P + +I L GV V + R+ +
Sbjct: 114 EILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDT 173
Query: 277 TSLTGRVLRERILQNYNYLTEEEIED 302
+ + N +E E+
Sbjct: 174 KINHLLIDLHHQFKRANGYSELEVSQ 199
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 328 | |||
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.92 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.91 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.91 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.91 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.9 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.9 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.89 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.89 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.89 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.89 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.88 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.88 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.88 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.88 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.88 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.88 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.88 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.87 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.87 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.87 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.87 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.87 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.87 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.87 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.87 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.87 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.86 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.86 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.86 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.86 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.86 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.86 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.86 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.86 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.86 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.85 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.85 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.85 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.85 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.85 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.85 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.85 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.85 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.85 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.85 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.85 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.84 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.84 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.84 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.84 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.84 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.84 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.84 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.84 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.83 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.83 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.83 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.83 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.83 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.82 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.82 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.82 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.82 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.82 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.82 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.82 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.81 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.81 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.81 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.81 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.81 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.8 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.8 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.8 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.8 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.8 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.79 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.79 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.79 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.79 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.79 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.79 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.79 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.78 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.78 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.78 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.77 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.77 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.77 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.77 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.77 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.76 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.75 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.75 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.74 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.74 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.74 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.74 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.73 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.73 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.73 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.73 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.73 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.73 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.73 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.72 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.72 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.72 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.71 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.71 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.71 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.71 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.71 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.7 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.7 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.7 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.69 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.69 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.69 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.68 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.68 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.68 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.68 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.67 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.67 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.67 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.67 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.66 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.66 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.65 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.65 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.65 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.64 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.64 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.64 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.64 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.63 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.63 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.63 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.62 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.62 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.62 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.61 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.61 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.61 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.6 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.6 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.6 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.59 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.59 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.59 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.59 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.58 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.58 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.58 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.58 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.58 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.57 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.57 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.57 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.57 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.56 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.56 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.56 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.56 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.56 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.56 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.56 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.55 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.55 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.55 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.54 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.54 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.54 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.54 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.53 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.53 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.53 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.53 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.53 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.52 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.52 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.51 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.51 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.5 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.5 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.49 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.49 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.49 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.49 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.48 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.48 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.47 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.47 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.47 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.47 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.47 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.47 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.46 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.46 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.45 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.45 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.45 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.45 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.45 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.45 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.44 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.44 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.44 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.42 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.42 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.42 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.41 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.4 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.39 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.38 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.38 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.38 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.38 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.37 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.37 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.37 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.37 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.37 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.37 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.36 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.36 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.34 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.34 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.34 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.34 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.33 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.32 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.32 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.32 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.3 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.3 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.28 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.27 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.26 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.25 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.24 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.22 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.22 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.2 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.2 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.19 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.16 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.13 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.13 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.1 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.1 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.08 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.07 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.05 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.02 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.02 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.01 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 99.0 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.98 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.94 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.94 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.94 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.9 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.88 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.86 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.86 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.82 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.79 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.78 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.77 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.73 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.69 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.67 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.66 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.66 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.66 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.63 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.61 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.59 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.58 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.58 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.57 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.51 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.43 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.4 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.35 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.23 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.19 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.15 | |
| 2jny_A | 67 | Uncharacterized BCR; structure, CGR1, NESG, struct | 98.15 | |
| 2jr6_A | 68 | UPF0434 protein NMA0874; solution, structural geno | 98.12 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.11 | |
| 2js4_A | 70 | UPF0434 protein BB2007; NESG, northeast structural | 98.11 | |
| 2hf1_A | 68 | Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A | 98.09 | |
| 2pk7_A | 69 | Uncharacterized protein; NESG, PLR1, putative tetr | 98.09 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.08 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.98 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.88 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.87 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.82 | |
| 2kpi_A | 56 | Uncharacterized protein SCO3027; zinc finger, PSI- | 97.81 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.72 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.7 | |
| 2k5r_A | 97 | Uncharacterized protein XF2673; solution structure | 97.66 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.61 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.43 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.4 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.28 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.16 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.96 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.77 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.35 | |
| 1pft_A | 50 | TFIIB, PFTFIIBN; N-terminal domain, transcription | 96.2 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.16 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.1 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 96.02 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.01 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.91 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 95.91 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.67 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.67 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.42 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.4 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.2 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 95.17 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.16 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.13 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.12 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.11 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 95.1 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.06 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 95.05 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.0 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 94.94 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.93 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 94.92 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.91 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.87 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 94.83 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.7 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 94.6 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.37 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.32 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 94.31 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 94.17 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.17 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 94.15 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 94.12 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.07 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 94.05 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 94.04 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.02 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 94.01 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 93.94 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 93.91 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.86 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 93.81 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 93.81 | |
| 3q87_A | 125 | Putative uncharacterized protein ECU08_1170; SAM-m | 93.79 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 93.65 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 93.57 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 93.5 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 93.46 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 93.4 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 93.3 | |
| 1vq8_Z | 83 | 50S ribosomal protein L37AE; ribosome 50S, protein | 93.28 | |
| 3j20_Y | 50 | 30S ribosomal protein S27AE; archaea, archaeal, KI | 93.15 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 93.12 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.04 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 93.03 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 93.01 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 92.95 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 92.88 | |
| 2k5c_A | 95 | Uncharacterized protein PF0385; structural genomic | 92.86 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 92.86 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 92.83 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 92.8 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 92.63 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 92.54 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 92.43 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 92.3 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 92.28 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 92.25 | |
| 1dl6_A | 58 | Transcription factor II B (TFIIB); zinc ribbon, ge | 92.21 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 92.13 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 92.04 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 91.96 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 91.9 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 91.85 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 91.82 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 91.61 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 91.57 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 91.44 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 91.43 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 91.39 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 91.33 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 91.22 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 91.17 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.98 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 90.84 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 90.83 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 90.71 | |
| 2akl_A | 138 | PHNA-like protein PA0128; two domains, Zn binding | 90.67 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 90.51 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 90.45 | |
| 3jyw_9 | 72 | 60S ribosomal protein L43; eukaryotic ribosome, RA | 90.28 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 90.27 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 90.17 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 90.13 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 90.07 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 89.73 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 89.65 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 89.64 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 89.61 | |
| 2k4x_A | 55 | 30S ribosomal protein S27AE; metal-binding, ribonu | 89.5 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 89.39 | |
| 1qyp_A | 57 | RNA polymerase II; transcription, RPB9, Zn ribbon, | 89.31 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 89.17 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 89.03 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 88.96 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 88.89 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 88.84 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 88.82 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 88.82 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 88.78 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 88.6 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 88.58 | |
| 1twf_L | 70 | ABC10-alpha, DNA-directed RNA polymerases I, II, a | 88.45 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 88.44 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 88.37 | |
| 3j21_i | 83 | 50S ribosomal protein L37AE; archaea, archaeal, KI | 88.02 | |
| 2j6a_A | 141 | Protein TRM112; translation termination, methyltra | 87.95 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 87.81 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 87.81 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 87.79 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 87.79 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 87.6 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 87.58 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 87.49 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 87.48 | |
| 3j21_g | 51 | 50S ribosomal protein L40E; archaea, archaeal, KIN | 87.46 | |
| 3h0g_L | 63 | DNA-directed RNA polymerases I, II, and III subuni | 87.29 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 87.24 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 87.22 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 87.17 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 87.13 | |
| 3iz5_m | 92 | 60S ribosomal protein L43 (L37AE); eukaryotic ribo | 87.11 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 87.01 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 86.85 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 86.8 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 86.77 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 86.63 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 86.54 | |
| 2jne_A | 101 | Hypothetical protein YFGJ; zinc fingers, two zinc, | 86.44 | |
| 3cc2_Z | 116 | 50S ribosomal protein L37AE, 50S ribosomal protein | 86.4 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 86.21 | |
| 1gh9_A | 71 | 8.3 kDa protein (gene MTH1184); beta+alpha complex | 86.17 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 86.1 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 85.96 | |
| 3izc_m | 92 | 60S ribosomal protein RPL43 (L37AE); eukaryotic ri | 85.94 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 85.9 | |
| 1tfi_A | 50 | Transcriptional elongation factor SII; transcripti | 85.71 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 85.45 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 85.44 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 85.36 | |
| 4a17_Y | 103 | RPL37A, 60S ribosomal protein L32; eukaryotic ribo | 85.35 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 85.31 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 85.29 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 85.23 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 85.01 | |
| 1ffk_W | 73 | Ribosomal protein L37AE; ribosome assembly, RNA-RN | 84.85 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 84.66 | |
| 2jrp_A | 81 | Putative cytoplasmic protein; two-zinc binding pro | 84.46 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 84.26 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 84.17 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 83.99 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 83.91 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 83.88 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 83.2 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 82.86 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 82.78 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 82.32 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 82.26 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 82.06 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 82.02 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 81.91 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 81.9 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 81.87 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 81.75 | |
| 3po3_S | 178 | Transcription elongation factor S-II; RNA polymera | 81.68 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 81.55 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 81.41 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 81.14 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 81.09 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 80.99 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 80.97 | |
| 1jdq_A | 98 | TM006 protein, hypothetical protein TM0983; struct | 80.76 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 80.43 | |
| 2km1_A | 136 | Protein DRE2; yeast, antiapoptotic, protein bindin | 80.37 |
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-25 Score=210.20 Aligned_cols=160 Identities=12% Similarity=0.187 Sum_probs=120.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|+++ +.. .....+...+...+|+++++||+|
T Consensus 103 ~~~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~gvD~s~~~~~~a~~~----~~~-~~~~~~~~~~~~~l~~~~~~fD~I 175 (416)
T 4e2x_A 103 ELTGPDPFIVEIGCNDGIMLRTIQEAGV--RHLGFEPSSGVAAKAREK----GIR-VRTDFFEKATADDVRRTEGPANVI 175 (416)
T ss_dssp TTCSSSCEEEEETCTTTTTHHHHHHTTC--EEEEECCCHHHHHHHHTT----TCC-EECSCCSHHHHHHHHHHHCCEEEE
T ss_pred hCCCCCCEEEEecCCCCHHHHHHHHcCC--cEEEECCCHHHHHHHHHc----CCC-cceeeechhhHhhcccCCCCEEEE
Confidence 4445788999999999999999999876 999999999999999874 100 001112234455566778899999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
++.++++|++|+..+|+++.++|||||++++.+++...... ...+......|..+++.+++.++++++||++++...
T Consensus 176 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~ 252 (416)
T 4e2x_A 176 YAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVA---KTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQR 252 (416)
T ss_dssp EEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHH---HTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred EECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhh---hcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEE
Confidence 99999999999999999999999999999998876421000 000111224788899999999999999999988655
Q ss_pred ----eCcEEEEEEe
Q 020307 317 ----QQSFIMFAAQ 326 (328)
Q Consensus 317 ----~~~~~~~~a~ 326 (328)
.+.+.++.++
T Consensus 253 ~~~~~g~l~~~~~~ 266 (416)
T 4e2x_A 253 LPVHGGEVRYTLAR 266 (416)
T ss_dssp ECGGGSEEEEEEEE
T ss_pred ccCCCCEEEEEEEe
Confidence 3444555444
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=183.59 Aligned_cols=166 Identities=14% Similarity=0.180 Sum_probs=130.9
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
..++.+|||+|||+|.++..+++.. ++.+|+|+|+|+.|++.|++++...+. ..++.++++|+.++|++ .||+|
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~--~~~v~~~~~D~~~~~~~--~~d~v 143 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA--PTPVDVIEGDIRDIAIE--NASMV 143 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC--SSCEEEEESCTTTCCCC--SEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc--CceEEEeeccccccccc--ccccc
Confidence 3578899999999999999999874 456899999999999999999887654 56899999999998864 69999
Q ss_pred EeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCC--cchhhHHHHH-----------------hhhccCCCC
Q 020307 237 HAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSS--TSLTGRVLRE-----------------RILQNYNYL 295 (328)
Q Consensus 237 ~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~--~~~~~~~~~~-----------------~~~~~~~~~ 295 (328)
++..+++|++++ ..+|++++++|||||++++.+....... .......+.. ........+
T Consensus 144 ~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~ 223 (261)
T 4gek_A 144 VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTD 223 (261)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCB
T ss_pred eeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCC
Confidence 999999999866 4689999999999999999987654211 0111111100 001234567
Q ss_pred CHHHHHHHHHHCCCeEEEEEE-eCcEEEEEEeCC
Q 020307 296 TEEEIEDLCTSCGLTNYTSKV-QQSFIMFAAQKP 328 (328)
Q Consensus 296 ~~~~l~~ll~~~Gf~~v~~~~-~~~~~~~~a~k~ 328 (328)
+.+++.++|+++||+.++.+. ...|..++|+|+
T Consensus 224 s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K~ 257 (261)
T 4gek_A 224 SVETHKARLHKAGFEHSELWFQCFNFGSLVALKA 257 (261)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEEETTEEEEEEECC
T ss_pred CHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEEc
Confidence 899999999999999888643 567888999986
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=177.54 Aligned_cols=159 Identities=15% Similarity=0.202 Sum_probs=135.8
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++.+ +..+++|+|+|+.+++.+++++...+ ..++.++.+|+..+++++++||+
T Consensus 33 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~fD~ 109 (219)
T 3dh0_A 33 FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG---LKNVEVLKSEENKIPLPDNTVDF 109 (219)
T ss_dssp HTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT---CTTEEEEECBTTBCSSCSSCEEE
T ss_pred hCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEecccccCCCCCCCeeE
Confidence 445678899999999999999999985 56699999999999999999988765 45899999999999988899999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
|++..+++|++++..+++++.++|||||++++.++....... ...+...++.+++.++++++||++++..
T Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 179 (219)
T 3dh0_A 110 IFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDK----------GPPPEEVYSEWEVGLILEDAGIRVGRVV 179 (219)
T ss_dssp EEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSS----------SCCGGGSCCHHHHHHHHHHTTCEEEEEE
T ss_pred EEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccccccc----------CCchhcccCHHHHHHHHHHCCCEEEEEE
Confidence 999999999999999999999999999999999977653211 1134567899999999999999988865
Q ss_pred E-eCcEEEEEEeCC
Q 020307 316 V-QQSFIMFAAQKP 328 (328)
Q Consensus 316 ~-~~~~~~~~a~k~ 328 (328)
. ...++.++++|+
T Consensus 180 ~~~~~~~~~~~~k~ 193 (219)
T 3dh0_A 180 EVGKYCFGVYAMIV 193 (219)
T ss_dssp EETTTEEEEEEECC
T ss_pred eeCCceEEEEEEec
Confidence 4 456677777774
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=180.07 Aligned_cols=164 Identities=22% Similarity=0.313 Sum_probs=131.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++ +|||+|||+|.++..+++. +..+++|+|+|+.+++.+++++...+. ..++.++.+|+.++++++++||+|++.
T Consensus 43 ~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~D~v~~~ 118 (219)
T 3dlc_A 43 TAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANL--NDRIQIVQGDVHNIPIEDNYADLIVSR 118 (219)
T ss_dssp CEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECBTTBCSSCTTCEEEEEEE
T ss_pred CCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccc--cCceEEEEcCHHHCCCCcccccEEEEC
Confidence 344 9999999999999999998 556999999999999999999887664 468999999999999989999999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHH-------HhhhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR-------ERILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
.+++|++++..+++++.++|||||++++.++.............+. .....+...++.+++.++++++||+++
T Consensus 119 ~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v 198 (219)
T 3dlc_A 119 GSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSY 198 (219)
T ss_dssp SCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSE
T ss_pred chHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeE
Confidence 9999999999999999999999999999886544211111111111 111245667788999999999999998
Q ss_pred EEEEeCcEEEEEEeC
Q 020307 313 TSKVQQSFIMFAAQK 327 (328)
Q Consensus 313 ~~~~~~~~~~~~a~k 327 (328)
+.........++.+|
T Consensus 199 ~~~~~~~~~~~~~~k 213 (219)
T 3dlc_A 199 EIILGDEGFWIIISK 213 (219)
T ss_dssp EEEEETTEEEEEEBC
T ss_pred EEEecCCceEEEEec
Confidence 876655554445554
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=179.48 Aligned_cols=153 Identities=20% Similarity=0.288 Sum_probs=127.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.++ +|+|+|+|+.+++.|++++...+ .+++.++.+|+..+|+++++||+|
T Consensus 33 l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~---~~~v~~~~~d~~~l~~~~~~fD~V 107 (260)
T 1vl5_A 33 AALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNG---HQQVEYVQGDAEQMPFTDERFHIV 107 (260)
T ss_dssp HTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCC-CCCSCTTCEEEE
T ss_pred hCCCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcC---CCceEEEEecHHhCCCCCCCEEEE
Confidence 4455788999999999999999999876 99999999999999999987765 458999999999999989999999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH----hhhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE----RILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
++..+++|++|+..+|+++.++|||||++++.++..... +.....+.. ..+.+..+++.+++.++|+++||+++
T Consensus 108 ~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 185 (260)
T 1vl5_A 108 TCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN--DAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELE 185 (260)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSS--HHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEE
T ss_pred EEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCC--HHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEE
Confidence 999999999999999999999999999999988765322 221111111 22356788999999999999999987
Q ss_pred EEEE
Q 020307 313 TSKV 316 (328)
Q Consensus 313 ~~~~ 316 (328)
....
T Consensus 186 ~~~~ 189 (260)
T 1vl5_A 186 ELHC 189 (260)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7443
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-22 Score=175.65 Aligned_cols=153 Identities=16% Similarity=0.245 Sum_probs=129.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.+++++...+ ..++.++.+|++.+|+++++||+|
T Consensus 17 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~fD~v 91 (239)
T 1xxl_A 17 AECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKG---VENVRFQQGTAESLPFPDDSFDII 91 (239)
T ss_dssp HTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHT---CCSEEEEECBTTBCCSCTTCEEEE
T ss_pred hCcCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcC---CCCeEEEecccccCCCCCCcEEEE
Confidence 5567889999999999999999999876 99999999999999999987765 468999999999999988999999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH----hhhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE----RILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
++..+++|++++..+++++.++|||||++++.++..... +.....+.. ..+.|...++.+++.++++++||+++
T Consensus 92 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~ 169 (239)
T 1xxl_A 92 TCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPED--PVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQ 169 (239)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSS--HHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEE
T ss_pred EECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCC--hhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEE
Confidence 999999999999999999999999999999988765422 221211111 23466788999999999999999987
Q ss_pred EEEE
Q 020307 313 TSKV 316 (328)
Q Consensus 313 ~~~~ 316 (328)
+...
T Consensus 170 ~~~~ 173 (239)
T 1xxl_A 170 DIQK 173 (239)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7543
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=173.56 Aligned_cols=162 Identities=16% Similarity=0.220 Sum_probs=128.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.+++++. .++.++.+|+.+++++ ++||+|
T Consensus 41 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~d~~~~~~~-~~fD~v 110 (220)
T 3hnr_A 41 VVNKSFGNVLEFGVGTGNLTNKLLLAGR--TVYGIEPSREMRMIAKEKLP-------KEFSITEGDFLSFEVP-TSIDTI 110 (220)
T ss_dssp HHHTCCSEEEEECCTTSHHHHHHHHTTC--EEEEECSCHHHHHHHHHHSC-------TTCCEESCCSSSCCCC-SCCSEE
T ss_pred hhccCCCeEEEeCCCCCHHHHHHHhCCC--eEEEEeCCHHHHHHHHHhCC-------CceEEEeCChhhcCCC-CCeEEE
Confidence 3445788999999999999999999865 99999999999999998742 3788999999999887 899999
Q ss_pred EeccccccCCChHH--HHHHHHhcccCCcEEEEEEeccCCCCcc-hhhHHHHH-------hhhccCCCCCHHHHHHHHHH
Q 020307 237 HAGAALHCWPSPSN--AVAEISRILRSGGVFVGTTFLRYTSSTS-LTGRVLRE-------RILQNYNYLTEEEIEDLCTS 306 (328)
Q Consensus 237 ~~~~vl~h~~d~~~--~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~l~~ll~~ 306 (328)
++..+++|++++.. +|+++.++|||||++++.++........ .....+.. .......+++.+++.+++++
T Consensus 111 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 190 (220)
T 3hnr_A 111 VSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFEN 190 (220)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHH
T ss_pred EECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHH
Confidence 99999999999977 9999999999999999998765421111 00111111 11133456799999999999
Q ss_pred CCCeEEEEEEeCcEEEEEEeCC
Q 020307 307 CGLTNYTSKVQQSFIMFAAQKP 328 (328)
Q Consensus 307 ~Gf~~v~~~~~~~~~~~~a~k~ 328 (328)
+||+++......-..++.++|+
T Consensus 191 aGf~v~~~~~~~~~w~~~~~~~ 212 (220)
T 3hnr_A 191 NGFHVTFTRLNHFVWVMEATKQ 212 (220)
T ss_dssp TTEEEEEEECSSSEEEEEEEEC
T ss_pred CCCEEEEeeccceEEEEeehhh
Confidence 9999888666666677777664
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.9e-22 Score=175.75 Aligned_cols=157 Identities=21% Similarity=0.260 Sum_probs=130.2
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.+++++...++ ..++.++.+|+.++|+++++||+|
T Consensus 57 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~fD~v 133 (273)
T 3bus_A 57 LDVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGL--ANRVTFSYADAMDLPFEDASFDAV 133 (273)
T ss_dssp SCCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTSCCSCTTCEEEE
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEECccccCCCCCCCccEE
Confidence 445678899999999999999999874 45999999999999999999887664 457999999999999988999999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH--hhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE--RILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
++..+++|++++..+|+++.++|||||++++.++.............+.. ....+..+++.+++.++++++||++++.
T Consensus 134 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 213 (273)
T 3bus_A 134 WALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTST 213 (273)
T ss_dssp EEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred EEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 99999999999999999999999999999999987653332221111111 1224667899999999999999998875
Q ss_pred EE
Q 020307 315 KV 316 (328)
Q Consensus 315 ~~ 316 (328)
..
T Consensus 214 ~~ 215 (273)
T 3bus_A 214 VD 215 (273)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-22 Score=179.10 Aligned_cols=155 Identities=15% Similarity=0.170 Sum_probs=128.2
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
...++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.++++....++ ..++.++.+|+..+|+++++||+|+
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~fD~v~ 155 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGL--ADNITVKYGSFLEIPCEDNSYDFIW 155 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTC--TTTEEEEECCTTSCSSCTTCEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEEcCcccCCCCCCCEeEEE
Confidence 45678899999999999999999873 23999999999999999999877664 4689999999999999899999999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
+..+++|++++..+|+++.++|||||++++.++.............+.... ....+.+.+++.++++++||++++...
T Consensus 156 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGf~~~~~~~ 233 (297)
T 2o57_A 156 SQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRI-KLHDMGSLGLYRSLAKECGLVTLRTFS 233 (297)
T ss_dssp EESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHH-TCSSCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHh-cCCCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 999999999999999999999999999999998765433222222222221 233567999999999999999887543
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.8e-22 Score=171.84 Aligned_cols=164 Identities=15% Similarity=0.243 Sum_probs=131.7
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.+++++.. ..++.++++|+.+++++ ++||+|++
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~~~-~~fD~v~~ 115 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG-----NLKVKYIEADYSKYDFE-EKYDMVVS 115 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS-----CTTEEEEESCTTTCCCC-SCEEEEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc-----CCCEEEEeCchhccCCC-CCceEEEE
Confidence 3467899999999999999999997777999999999999999998765 34899999999998876 89999999
Q ss_pred ccccccCCChH--HHHHHHHhcccCCcEEEEEEeccCCCCc--chhhHHHHH----------------hhhccCCCCCHH
Q 020307 239 GAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSST--SLTGRVLRE----------------RILQNYNYLTEE 298 (328)
Q Consensus 239 ~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~--~~~~~~~~~----------------~~~~~~~~~~~~ 298 (328)
..+++|++++. .+++++.++|||||++++.++....... ......+.. ....+...++.+
T Consensus 116 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (234)
T 3dtn_A 116 ALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMN 195 (234)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHH
T ss_pred eCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHH
Confidence 99999998876 5999999999999999999977642211 010111111 011456778999
Q ss_pred HHHHHHHHCCCeEEEE-EEeCcEEEEEEeCC
Q 020307 299 EIEDLCTSCGLTNYTS-KVQQSFIMFAAQKP 328 (328)
Q Consensus 299 ~l~~ll~~~Gf~~v~~-~~~~~~~~~~a~k~ 328 (328)
++.++|+++||+.++. .....|.++.+.|+
T Consensus 196 ~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~ 226 (234)
T 3dtn_A 196 QQLNWLKEAGFRDVSCIYKYYQFAVMFGRKT 226 (234)
T ss_dssp HHHHHHHHTTCEEEEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHcCCCceeeeeeecceeEEEEEec
Confidence 9999999999999886 44577888888774
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-22 Score=178.12 Aligned_cols=175 Identities=22% Similarity=0.384 Sum_probs=124.4
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCccccCccceeeeecccCCCC-----ccCCcchhhhccCCchHHHHH
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKD-----YTEVKPASTELFRSPFVSFLY 135 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~~~~~-----y~~~~~~~~~~~~~~~~~~~~ 135 (328)
+.||.|++.+.... ..+.|.+|+..+..++||++++....... ..++......++....+....
T Consensus 3 ~~Cp~C~~~~~~~~-----------~~~~C~~~~~~~~~~~Gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (269)
T 1p91_A 3 FSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDSAEMMQARRAFLDAGHYQPLR 71 (269)
T ss_dssp BBCTTTCCBCEEET-----------TEEECTTCCEEEBCTTSCEECSCSSSSCSCCCSSSHHHHHHHHHHHTTTTTHHHH
T ss_pred ccCCCCCccceeCC-----------CEEECCCCCcCCcCCCEEEEeecccccCCCCCCCCHHHHHHHHHHHhCCCcHHHH
Confidence 78999998775532 47999999998899999999876533111 111111111122221111111
Q ss_pred HhhHHhhhhcCCCCCcchhhhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCC
Q 020307 136 ERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN 215 (328)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~ 215 (328)
+.. ...+. ..+ ..++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|+++ ..+
T Consensus 72 ~~~-~~~~~----------~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~--------~~~ 131 (269)
T 1p91_A 72 DAI-VAQLR----------ERL-DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR--------YPQ 131 (269)
T ss_dssp HHH-HHHHH----------HHS-CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH--------CTT
T ss_pred HHH-HHHHH----------Hhc-CCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHh--------CCC
Confidence 100 00000 001 1467899999999999999999985556999999999999999886 457
Q ss_pred eEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 216 LALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 216 i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
+.+..+|+..+|+++++||+|++..+.. .++++.++|||||++++.++...
T Consensus 132 ~~~~~~d~~~~~~~~~~fD~v~~~~~~~-------~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 132 VTFCVASSHRLPFSDTSMDAIIRIYAPC-------KAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp SEEEECCTTSCSBCTTCEEEEEEESCCC-------CHHHHHHHEEEEEEEEEEEECTT
T ss_pred cEEEEcchhhCCCCCCceeEEEEeCChh-------hHHHHHHhcCCCcEEEEEEcCHH
Confidence 8999999999998889999999876632 48999999999999999998754
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-22 Score=173.37 Aligned_cols=146 Identities=13% Similarity=0.117 Sum_probs=119.7
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||||||+|.++..+++.++ +|+|+|+|+.+++.|+++.. .++.++++|+.++ +++++||+|++.
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~-------~~v~~~~~d~~~~-~~~~~fD~v~~~ 110 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLK-------DGITYIHSRFEDA-QLPRRYDNIVLT 110 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSC-------SCEEEEESCGGGC-CCSSCEEEEEEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhh-------CCeEEEEccHHHc-CcCCcccEEEEh
Confidence 4677999999999999999999887 99999999999999998742 2799999999887 467899999999
Q ss_pred cccccCCChHHHHHHHH-hcccCCcEEEEEEeccCCCCcchh--hHH--------HHHhhhccCCCCCHHHHHHHHHHCC
Q 020307 240 AALHCWPSPSNAVAEIS-RILRSGGVFVGTTFLRYTSSTSLT--GRV--------LRERILQNYNYLTEEEIEDLCTSCG 308 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~-r~LkpgG~l~i~~~~~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~l~~ll~~~G 308 (328)
++++|++++..+|+++. ++|||||++++.+++......... ... -......|..+++.+++.++++++|
T Consensus 111 ~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 190 (250)
T 2p7i_A 111 HVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAG 190 (250)
T ss_dssp SCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTT
T ss_pred hHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCC
Confidence 99999999999999999 999999999999987642110000 000 0011336778899999999999999
Q ss_pred CeEEEEE
Q 020307 309 LTNYTSK 315 (328)
Q Consensus 309 f~~v~~~ 315 (328)
|++++..
T Consensus 191 f~~~~~~ 197 (250)
T 2p7i_A 191 LQVTYRS 197 (250)
T ss_dssp CEEEEEE
T ss_pred CeEEEEe
Confidence 9988853
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-22 Score=174.88 Aligned_cols=152 Identities=15% Similarity=0.227 Sum_probs=126.0
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.++++... ..++.++.+|+.++|+++++||+|
T Consensus 51 ~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v 124 (266)
T 3ujc_A 51 IELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSG-----NNKIIFEANDILTKEFPENNFDLI 124 (266)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCS-----CTTEEEEECCTTTCCCCTTCEEEE
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhc-----CCCeEEEECccccCCCCCCcEEEE
Confidence 455678899999999999999999974 34999999999999999987543 268999999999999889999999
Q ss_pred EeccccccC--CChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH-hhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 237 HAGAALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-RILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 237 ~~~~vl~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
++..+++|+ +++..+++++.++|||||++++.++.... ...+ ...+.. ....+..+++.+++.++++++||++++
T Consensus 125 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 202 (266)
T 3ujc_A 125 YSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATE-KENW-DDEFKEYVKQRKYTLITVEEYADILTACNFKNVV 202 (266)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESC-GGGC-CHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred eHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCC-cccc-hHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEE
Confidence 999999999 78899999999999999999999987653 1122 112211 223567789999999999999999887
Q ss_pred EEE
Q 020307 314 SKV 316 (328)
Q Consensus 314 ~~~ 316 (328)
...
T Consensus 203 ~~~ 205 (266)
T 3ujc_A 203 SKD 205 (266)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-21 Score=169.82 Aligned_cols=151 Identities=15% Similarity=0.192 Sum_probs=126.5
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.+++++...++ ..++.++.+|+.++|+++++||+|++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~fD~i~~ 120 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGL--QNRVTGIVGSMDDLPFRNEELDLIWS 120 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTSCCCCTTCEEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCC--CcCcEEEEcChhhCCCCCCCEEEEEE
Confidence 457889999999999999999998 466999999999999999999888764 46799999999999988899999999
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCc-chhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
..+++|+ ++..+++++.++|||||++++.++....... ......+.. ....+.+.+++.++++++||++++...
T Consensus 121 ~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~aGf~~v~~~~ 195 (267)
T 3kkz_A 121 EGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMD---AYPEIDTIPNQVAKIHKAGYLPVATFI 195 (267)
T ss_dssp SSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHH---HCTTCEEHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHH---hCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 9999999 8999999999999999999999976432221 112222222 234678999999999999999988544
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.88 E-value=9.8e-22 Score=172.62 Aligned_cols=152 Identities=13% Similarity=0.121 Sum_probs=125.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.+++++...++ ..++.++.+|+.++++ +++||+|
T Consensus 32 ~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~v~~~~~d~~~~~~-~~~fD~V 107 (256)
T 1nkv_A 32 LRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGV--SERVHFIHNDAAGYVA-NEKCDVA 107 (256)
T ss_dssp TCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCCTTCCC-SSCEEEE
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEECChHhCCc-CCCCCEE
Confidence 445678899999999999999999875 44999999999999999999887654 4589999999999887 7899999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHh--hhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER--ILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
++..+++|++++..+|+++.++|||||++++.++........ ..+... ...+..+++.+++.++++++||++++.
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 184 (256)
T 1nkv_A 108 ACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPAT---EEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEM 184 (256)
T ss_dssp EEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSS---HHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEE
T ss_pred EECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCCh---HHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEE
Confidence 999999999999999999999999999999998764322111 111111 124457889999999999999998774
Q ss_pred E
Q 020307 315 K 315 (328)
Q Consensus 315 ~ 315 (328)
.
T Consensus 185 ~ 185 (256)
T 1nkv_A 185 V 185 (256)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-21 Score=169.25 Aligned_cols=151 Identities=15% Similarity=0.176 Sum_probs=125.7
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
...++.+|||+|||+|.++..+++.++ .+|+|+|+|+.+++.+++++...++ ..++.++++|+..+|+++++||+|+
T Consensus 43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~fD~v~ 119 (257)
T 3f4k_A 43 ELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKANC--ADRVKGITGSMDNLPFQNEELDLIW 119 (257)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTSCSSCTTCEEEEE
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECChhhCCCCCCCEEEEE
Confidence 345678999999999999999999975 3999999999999999999988764 4569999999999998889999999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCc-chhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
+..+++|+ ++..+++++.++|||||++++.++....... ......+.. .....++.+++.++++++||+++...
T Consensus 120 ~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (257)
T 3f4k_A 120 SEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMD---AYPEISVIPTCIDKMERAGYTPTAHF 194 (257)
T ss_dssp EESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHH---HCTTCCBHHHHHHHHHHTTEEEEEEE
T ss_pred ecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHH---hCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 99999999 8999999999999999999999976432221 112222322 23447799999999999999998854
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-21 Score=167.06 Aligned_cols=157 Identities=16% Similarity=0.128 Sum_probs=120.6
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcC--CCCCeEEEEecCCCCCCCCCccc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRLPFASGFVD 234 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~--~~~~i~~~~~d~~~lp~~~~~fD 234 (328)
+...++.+|||+|||+|.++..+++.++..+++|+|+|+.+++.+++++...++. ...++.++.+|+..+++.+++||
T Consensus 25 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 104 (219)
T 3jwg_A 25 LKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYD 104 (219)
T ss_dssp HHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCS
T ss_pred HhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCC
Confidence 4445678999999999999999999887679999999999999999988664420 01289999999988887788999
Q ss_pred eEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHH----HHHHHCC
Q 020307 235 AVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIE----DLCTSCG 308 (328)
Q Consensus 235 ~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~ll~~~G 308 (328)
+|++..+++|++++ ..+++++.++|||||+++...........+. ..........|...++.+++. ++++++|
T Consensus 105 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~G 183 (219)
T 3jwg_A 105 AATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGN-LFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYG 183 (219)
T ss_dssp EEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCC-T-----GGGCCTTSBCHHHHHHHHHHHHHHHT
T ss_pred EEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcc-cCcccccccCceeeecHHHHHHHHHHHHHHCC
Confidence 99999999999977 6899999999999995554443222111111 111122344777789999999 8899999
Q ss_pred CeEEEE
Q 020307 309 LTNYTS 314 (328)
Q Consensus 309 f~~v~~ 314 (328)
|++...
T Consensus 184 f~v~~~ 189 (219)
T 3jwg_A 184 YSVRFL 189 (219)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 987654
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-21 Score=175.05 Aligned_cols=152 Identities=17% Similarity=0.086 Sum_probs=126.4
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++...++ ..++.++.+|+.++|+++++||+|++
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~fD~V~~ 191 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRI--DDHVRSRVCNMLDTPFDKGAVTASWN 191 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTSCCCCTTCEEEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC--CCceEEEECChhcCCCCCCCEeEEEE
Confidence 5678899999999999999999983 34999999999999999999988764 45899999999999988899999999
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcch--hhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL--TGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
..+++|+ ++..+|+++.++|||||++++.++......... ....+... ....+++.+++.++++++||++++...
T Consensus 192 ~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~~l~~aGf~~~~~~~ 268 (312)
T 3vc1_A 192 NESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAH--FECNIHSRREYLRAMADNRLVPHTIVD 268 (312)
T ss_dssp ESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHH--HTCCCCBHHHHHHHHHTTTEEEEEEEE
T ss_pred CCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhh--hcCCCCCHHHHHHHHHHCCCEEEEEEe
Confidence 9999999 699999999999999999999998765432111 12222222 234588999999999999999888544
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=170.59 Aligned_cols=147 Identities=23% Similarity=0.292 Sum_probs=122.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++.. ..++.++.+|+..+++++++||+|++.
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~~fD~v~~~ 123 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRTGY--KAVGVDISEVMIQKGKERGE------GPDLSFIKGDLSSLPFENEQFEAIMAI 123 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHTTTC------BTTEEEEECBTTBCSSCTTCEEEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhcc------cCCceEEEcchhcCCCCCCCccEEEEc
Confidence 4678999999999999999999865 99999999999999987642 468999999999999889999999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
.+++|++++..+++++.++|||||++++.++.............. .....+...++.+++.++++++||++++..
T Consensus 124 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 124 NSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRL-YGKDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp SCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGG-GTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhh-ccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 999999999999999999999999999999765422111101100 012246678999999999999999998854
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.2e-22 Score=175.81 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=123.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCccceEEec
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~i~~~ 239 (328)
++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|++++...++ ..++.++.+|+.+++ +.+++||+|++.
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 143 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH--QVILCDLSAQMIDRAKQAAEAKGV--SDNMQFIHCAAQDVASHLETPVDLILFH 143 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC-CC--GGGEEEEESCGGGTGGGCSSCEEEEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CcceEEEEcCHHHhhhhcCCCceEEEEC
Confidence 367999999999999999999865 999999999999999999887653 368999999999887 778999999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcch-h---hHHHHH-------hhhccCCCCCHHHHHHHHHHCC
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL-T---GRVLRE-------RILQNYNYLTEEEIEDLCTSCG 308 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-~---~~~~~~-------~~~~~~~~~~~~~l~~ll~~~G 308 (328)
.+++|++++..+++++.++|||||++++.+++........ . ...+.. ....+..+++.+++.++++++|
T Consensus 144 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 223 (285)
T 4htf_A 144 AVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAG 223 (285)
T ss_dssp SCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTT
T ss_pred chhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCC
Confidence 9999999999999999999999999999998754211000 0 001111 1124457899999999999999
Q ss_pred CeEEEEEE
Q 020307 309 LTNYTSKV 316 (328)
Q Consensus 309 f~~v~~~~ 316 (328)
|++++...
T Consensus 224 f~v~~~~~ 231 (285)
T 4htf_A 224 WQIMGKTG 231 (285)
T ss_dssp CEEEEEEE
T ss_pred Cceeeeee
Confidence 99988654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=173.50 Aligned_cols=155 Identities=17% Similarity=0.278 Sum_probs=128.6
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|||||||+|.++..+++.++..+++|+|+|+.+++.+++++...+ ..++.++.+|+..+++++++||+|++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~ 111 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG---IKNVKFLQANIFSLPFEDSSFDHIFV 111 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCGGGCCSCTTCEEEEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEcccccCCCCCCCeeEEEE
Confidence 457889999999999999999999877899999999999999999988765 45899999999999988999999999
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCC----CcchhhHHHHH----hhhccCCCCCHHHHHHHHHHCCCe
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTS----STSLTGRVLRE----RILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
..+++|++++..+++++.++|||||++++.++..... ..+.....+.. ....+...++..++..+|+++||+
T Consensus 112 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 191 (276)
T 3mgg_A 112 CFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFE 191 (276)
T ss_dssp ESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCE
T ss_pred echhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999998764321 11111222111 222445667889999999999999
Q ss_pred EEEEEE
Q 020307 311 NYTSKV 316 (328)
Q Consensus 311 ~v~~~~ 316 (328)
+++...
T Consensus 192 ~v~~~~ 197 (276)
T 3mgg_A 192 KIRVEP 197 (276)
T ss_dssp EEEEEE
T ss_pred eEEEee
Confidence 888543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=177.35 Aligned_cols=167 Identities=15% Similarity=0.163 Sum_probs=131.7
Q ss_pred ccCCCeEEEEcCCcCHHHHHHH-HhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFA-KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
..++.+|||||||+|.++..++ ...+..+|+|+|+|+.+++.|++++...+. ..++.++++|+.+++++ ++||+|+
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~-~~fD~v~ 192 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL--AGQITLHRQDAWKLDTR-EGYDLLT 192 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT--GGGEEEEECCGGGCCCC-SCEEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC--CCceEEEECchhcCCcc-CCeEEEE
Confidence 4568899999999999999986 445677999999999999999999887653 34599999999999887 8999999
Q ss_pred eccccccCCChHH---HHHHHHhcccCCcEEEEEEeccCCC---Ccchhh-----------HH-HHHhhhc-cCCCCCHH
Q 020307 238 AGAALHCWPSPSN---AVAEISRILRSGGVFVGTTFLRYTS---STSLTG-----------RV-LRERILQ-NYNYLTEE 298 (328)
Q Consensus 238 ~~~vl~h~~d~~~---~l~~~~r~LkpgG~l~i~~~~~~~~---~~~~~~-----------~~-~~~~~~~-~~~~~~~~ 298 (328)
+..+++|++++.. +++++.++|||||++++.++..... ...|.. .. +...... ...+++.+
T Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 193 SNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp CCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred ECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 9999999999976 7999999999999999988665321 111110 00 1111112 23568999
Q ss_pred HHHHHHHHCCCeEEEEEE--eCcEEEEEEeCC
Q 020307 299 EIEDLCTSCGLTNYTSKV--QQSFIMFAAQKP 328 (328)
Q Consensus 299 ~l~~ll~~~Gf~~v~~~~--~~~~~~~~a~k~ 328 (328)
++.++++++||++++... ...+..++++||
T Consensus 273 ~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 273 QTRAQLEEAGFTDLRFEDDRARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred HHHHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence 999999999999988653 344577888887
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=160.89 Aligned_cols=146 Identities=12% Similarity=0.203 Sum_probs=121.8
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.+. +++|+|+++.+++.++++ .+++.+..+| +++++++||+|
T Consensus 13 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~--------~~~v~~~~~d---~~~~~~~~D~v 79 (170)
T 3i9f_A 13 IFEGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEK--------FDSVITLSDP---KEIPDNSVDFI 79 (170)
T ss_dssp HHSSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHH--------CTTSEEESSG---GGSCTTCEEEE
T ss_pred cCcCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHh--------CCCcEEEeCC---CCCCCCceEEE
Confidence 4456778999999999999999999874 999999999999999987 4578999999 66778899999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
++..+++|++++..+++++.++|||||++++.++....... .+.+...++.++++++++ ||++++...
T Consensus 80 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~--Gf~~~~~~~ 147 (170)
T 3i9f_A 80 LFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGI----------GPPLSIRMDEKDYMGWFS--NFVVEKRFN 147 (170)
T ss_dssp EEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSS----------SSCGGGCCCHHHHHHHTT--TEEEEEEEC
T ss_pred EEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCcccccc----------CchHhhhcCHHHHHHHHh--CcEEEEccC
Confidence 99999999999999999999999999999999987653211 113456689999999999 999998766
Q ss_pred eCc-EEEEEEeC
Q 020307 317 QQS-FIMFAAQK 327 (328)
Q Consensus 317 ~~~-~~~~~a~k 327 (328)
... .+.++++|
T Consensus 148 ~~~~~~~l~~~~ 159 (170)
T 3i9f_A 148 PTPYHFGLVLKR 159 (170)
T ss_dssp SSTTEEEEEEEE
T ss_pred CCCceEEEEEec
Confidence 543 45555543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-21 Score=179.83 Aligned_cols=158 Identities=18% Similarity=0.172 Sum_probs=126.8
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhc-----CcCCCCCeEEEEecCCCC------
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQD-----NTILTSNLALVRADVCRL------ 226 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~-----~~~~~~~i~~~~~d~~~l------ 226 (328)
..++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++... +.....++.++.+|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 4578899999999999999998873 6679999999999999999887543 100136899999999887
Q ss_pred CCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHH
Q 020307 227 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS 306 (328)
Q Consensus 227 p~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 306 (328)
++++++||+|++..+++|++++..+|+++.++|||||++++.++........................++.+++.++|++
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 240 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAE 240 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHH
T ss_pred CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999987765433322111111122244567889999999999
Q ss_pred CCCeEEEEEE
Q 020307 307 CGLTNYTSKV 316 (328)
Q Consensus 307 ~Gf~~v~~~~ 316 (328)
+||++++...
T Consensus 241 aGF~~v~~~~ 250 (383)
T 4fsd_A 241 AGFRDVRLVS 250 (383)
T ss_dssp TTCCCEEEEE
T ss_pred CCCceEEEEe
Confidence 9998776544
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=167.40 Aligned_cols=156 Identities=12% Similarity=0.079 Sum_probs=118.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcC--CCCCeEEEEecCCCCCCCCCccc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRLPFASGFVD 234 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~--~~~~i~~~~~d~~~lp~~~~~fD 234 (328)
+...++.+|||+|||+|.++..+++.++..+++|+|+|+.+++.+++++...++. ...++.++.+|+...+...++||
T Consensus 25 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 104 (217)
T 3jwh_A 25 LKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYD 104 (217)
T ss_dssp HHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCS
T ss_pred HHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcC
Confidence 4445678999999999999999999887679999999999999999998765420 01279999999988877778999
Q ss_pred eEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHH----HHHHHCC
Q 020307 235 AVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIE----DLCTSCG 308 (328)
Q Consensus 235 ~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~ll~~~G 308 (328)
+|++..+++|++++ ..+++++.++|||||+++++.........+. ..........|...++.+++. ++++++|
T Consensus 105 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~G 183 (217)
T 3jwh_A 105 AATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFAN-LPAGKLRHKDHRFEWTRSQFQNWANKITERFA 183 (217)
T ss_dssp EEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC------------CCSCBCHHHHHHHHHHHHHHSS
T ss_pred EEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcc-cccccccccccccccCHHHHHHHHHHHHHHcC
Confidence 99999999999977 7999999999999996666553211000000 000111234677789999999 9999999
Q ss_pred CeEEE
Q 020307 309 LTNYT 313 (328)
Q Consensus 309 f~~v~ 313 (328)
|++..
T Consensus 184 f~v~~ 188 (217)
T 3jwh_A 184 YNVQF 188 (217)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 98765
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=164.91 Aligned_cols=139 Identities=13% Similarity=0.172 Sum_probs=119.6
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccc
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 241 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~v 241 (328)
+.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++ .+++.++.+|+.++++++++||+|++..+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 111 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH--QIEGLEPATRLVELARQT--------HPSVTFHHGTITDLSDSPKRWAGLLAWYS 111 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC--CEEEECCCHHHHHHHHHH--------CTTSEEECCCGGGGGGSCCCEEEEEEESS
T ss_pred CCeEEEecCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHh--------CCCCeEEeCcccccccCCCCeEEEEehhh
Confidence 78999999999999999999865 999999999999999986 55899999999999988899999999999
Q ss_pred cccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEe
Q 020307 242 LHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ 317 (328)
Q Consensus 242 l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~ 317 (328)
++|++ ++..+|+++.++|||||++++.++.... ...+ . ....+..+++.+++.++++++||++++....
T Consensus 112 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~-~~~~-~-----~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 182 (203)
T 3h2b_A 112 LIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPS-LEPM-Y-----HPVATAYRWPLPELAQALETAGFQVTSSHWD 182 (203)
T ss_dssp STTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSS-CEEE-C-----CSSSCEEECCHHHHHHHHHHTTEEEEEEEEC
T ss_pred HhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCc-hhhh-h-----chhhhhccCCHHHHHHHHHHCCCcEEEEEec
Confidence 99997 8899999999999999999999987653 1111 0 0113456789999999999999999986553
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.86 E-value=6e-21 Score=167.43 Aligned_cols=152 Identities=16% Similarity=0.151 Sum_probs=119.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.++ .+|+|+|+|+.+++.++++.. ..++.++.+|+..+++++++||+|
T Consensus 40 ~~~~~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 40 LPDFNQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTT------SPVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp CCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCC------CTTEEEEECCGGGCCCCTTCEEEE
T ss_pred hhccCCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhc------cCCeEEEEcchhhCCCCCCCeEEE
Confidence 4445788999999999999999999864 389999999999999998754 358999999999999888999999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCc---chh------------hHHHHH------h--hhccCC
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST---SLT------------GRVLRE------R--ILQNYN 293 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~---~~~------------~~~~~~------~--~~~~~~ 293 (328)
++..+++|++++..+|+++.++|||||++++.++....... .|. ...+.. . ......
T Consensus 113 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (253)
T 3g5l_A 113 LSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKY 192 (253)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEE
T ss_pred EEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccE
Confidence 99999999999999999999999999999998765320000 000 000000 0 001122
Q ss_pred CCCHHHHHHHHHHCCCeEEEEE
Q 020307 294 YLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 294 ~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
.++.+++.++|+++||++++..
T Consensus 193 ~~t~~~~~~~l~~aGF~~~~~~ 214 (253)
T 3g5l_A 193 HRTVTTYIQTLLKNGFQINSVI 214 (253)
T ss_dssp CCCHHHHHHHHHHTTEEEEEEE
T ss_pred ecCHHHHHHHHHHcCCeeeeee
Confidence 3499999999999999998865
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=171.57 Aligned_cols=150 Identities=9% Similarity=0.032 Sum_probs=121.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.+++++.. ..++.++.+|+..+++++++||+|
T Consensus 89 l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v 162 (254)
T 1xtp_A 89 LPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAG-----MPVGKFILASMETATLPPNTYDLI 162 (254)
T ss_dssp STTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTT-----SSEEEEEESCGGGCCCCSSCEEEE
T ss_pred hcccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhcc-----CCceEEEEccHHHCCCCCCCeEEE
Confidence 344567899999999999999999886 44799999999999999998654 357999999999988888999999
Q ss_pred EeccccccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 237 HAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 237 ~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
++.++++|++ ++..+|+++.++|||||++++.++...... +.. ....+..+++.+++.++++++||++++.
T Consensus 163 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 235 (254)
T 1xtp_A 163 VIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR--FLV-----DKEDSSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC--EEE-----ETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc--cee-----cccCCcccCCHHHHHHHHHHCCCEEEEe
Confidence 9999999995 478999999999999999999987433111 100 0113344679999999999999999987
Q ss_pred EEeCc
Q 020307 315 KVQQS 319 (328)
Q Consensus 315 ~~~~~ 319 (328)
.....
T Consensus 236 ~~~~~ 240 (254)
T 1xtp_A 236 AFQEE 240 (254)
T ss_dssp EECTT
T ss_pred eecCC
Confidence 65443
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.3e-21 Score=163.82 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=124.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcC--CCCCeEEEEecCCCCCCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~--~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++...+.. ...++.++.+|+..+++++++||+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASKGY--SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 4678999999999999999999865 9999999999999999987764421 01268999999999998899999999
Q ss_pred eccccccCCChH---HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhh-------------------hccCCCC
Q 020307 238 AGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI-------------------LQNYNYL 295 (328)
Q Consensus 238 ~~~vl~h~~d~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~ 295 (328)
+..+++|++++. .+++++.++|||||++++.++........+ ...+.... ..+..++
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLY-RKRYLHDFPITKEEGSFLARDPETGETEFIAHHF 185 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHH-HHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECB
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHH-HHHhhhhccchhhhcceEecccccCCcceeeEeC
Confidence 999999999998 899999999999999999998764322211 22211111 1234689
Q ss_pred CHHHHHHHHHHCCCeEEEEEE
Q 020307 296 TEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 296 ~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
+.+++.++++++||++++...
T Consensus 186 ~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 186 TEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp CHHHHHHHHHTTTEEEEEEEE
T ss_pred CHHHHHHHHHHcCCEEEEEEe
Confidence 999999999999999888543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=164.88 Aligned_cols=137 Identities=22% Similarity=0.292 Sum_probs=116.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++. ++.+..+|+..++ .+++||+|++.
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~---------~~~~~~~d~~~~~-~~~~fD~v~~~ 109 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAAGF--DVDATDGSPELAAEASRRL---------GRPVRTMLFHQLD-AIDAYDAVWAH 109 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH---------TSCCEECCGGGCC-CCSCEEEEEEC
T ss_pred CCCCcEEEECCCCCHHHHHHHHcCC--eEEEECCCHHHHHHHHHhc---------CCceEEeeeccCC-CCCcEEEEEec
Confidence 4678999999999999999999865 9999999999999999864 4567889998888 78899999999
Q ss_pred cccccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCC-CeEEEEEE
Q 020307 240 AALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG-LTNYTSKV 316 (328)
Q Consensus 240 ~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~G-f~~v~~~~ 316 (328)
.+++|++ ++..+|+++.++|||||++++..+........ ....+..+++.+++.++++++| |++++...
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~ 181 (211)
T 3e23_A 110 ACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRD--------KLARYYNYPSEEWLRARYAEAGTWASVAVES 181 (211)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEEC--------TTSCEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCccccc--------ccchhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence 9999998 77899999999999999999998765432211 1124567899999999999999 99888643
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=161.32 Aligned_cols=158 Identities=16% Similarity=0.174 Sum_probs=122.0
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.+++ .+ ..++.++.+|+.++ +++++||+|++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~----~~---~~~~~~~~~d~~~~-~~~~~~D~v~~ 113 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLAD--RVTALDGSAEMIAEAGR----HG---LDNVEFRQQDLFDW-TPDRQWDAVFF 113 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHGG----GC---CTTEEEEECCTTSC-CCSSCEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHh----cC---CCCeEEEecccccC-CCCCceeEEEE
Confidence 45677999999999999999999865 99999999999999987 21 46899999999887 67889999999
Q ss_pred ccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcch-hhHHHHHh----h--h----ccCCCCCHHHHHHHHH
Q 020307 239 GAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSL-TGRVLRER----I--L----QNYNYLTEEEIEDLCT 305 (328)
Q Consensus 239 ~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~~----~--~----~~~~~~~~~~l~~ll~ 305 (328)
..+++|++++ ..+|+++.++|||||++++.+++........ ........ . . ....+++.+++.++++
T Consensus 114 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 193 (218)
T 3ou2_A 114 AHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLT 193 (218)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHH
T ss_pred echhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHH
Confidence 9999999997 7899999999999999999998764221111 00000000 0 0 1244789999999999
Q ss_pred HCCCeEEEEEEeCcEEEEEEe
Q 020307 306 SCGLTNYTSKVQQSFIMFAAQ 326 (328)
Q Consensus 306 ~~Gf~~v~~~~~~~~~~~~a~ 326 (328)
++||++.........+..+++
T Consensus 194 ~aGf~v~~~~~~~~~~~~~~~ 214 (218)
T 3ou2_A 194 ALGWSCSVDEVHPGFLYATCR 214 (218)
T ss_dssp HTTEEEEEEEEETTEEEEEEE
T ss_pred HCCCEEEeeeccccceEeecC
Confidence 999997766665555554444
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-20 Score=171.26 Aligned_cols=166 Identities=11% Similarity=0.155 Sum_probs=134.7
Q ss_pred cccC-CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCccce
Q 020307 158 KSAQ-GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDA 235 (328)
Q Consensus 158 ~~~~-~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~ 235 (328)
...+ +.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++++...++ ..++.++.+|+.+.+ +..+.||+
T Consensus 175 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~ 251 (352)
T 3mcz_A 175 GVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDL--GGRVEFFEKNLLDARNFEGGAADV 251 (352)
T ss_dssp GGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC--GGGEEEEECCTTCGGGGTTCCEEE
T ss_pred CCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCC--CCceEEEeCCcccCcccCCCCccE
Confidence 3344 78999999999999999999988889999999 8899999998877653 457999999998765 13456999
Q ss_pred EEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCC-cchhhHHHHH----hhhccCCCCCHHHHHHHHHHCC
Q 020307 236 VHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSS-TSLTGRVLRE----RILQNYNYLTEEEIEDLCTSCG 308 (328)
Q Consensus 236 i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~l~~ll~~~G 308 (328)
|++.+++||++++ ..+|+++.++|||||++++.++..+... .+.. ..+.. ....+...++.++|+++++++|
T Consensus 252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 330 (352)
T 3mcz_A 252 VMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPAL-SADFSLHMMVNTNHGELHPTPWIAGVVRDAG 330 (352)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHH-HHHHHHHHHHHSTTCCCCCHHHHHHHHHHTT
T ss_pred EEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCch-HHHhhHHHHhhCCCCCcCCHHHHHHHHHHCC
Confidence 9999999999877 7899999999999999999997665432 2221 11111 1123456789999999999999
Q ss_pred CeEEEEEEeCcEEEEEEeCC
Q 020307 309 LTNYTSKVQQSFIMFAAQKP 328 (328)
Q Consensus 309 f~~v~~~~~~~~~~~~a~k~ 328 (328)
|++++ ...+.+.+++++||
T Consensus 331 f~~~~-~~~g~~~l~~a~kp 349 (352)
T 3mcz_A 331 LAVGE-RSIGRYTLLIGQRS 349 (352)
T ss_dssp CEEEE-EEETTEEEEEEECC
T ss_pred Cceee-eccCceEEEEEecC
Confidence 99998 56788999999997
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=168.22 Aligned_cols=147 Identities=23% Similarity=0.317 Sum_probs=120.0
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
.+...++.+|||||||+|.++..+++. ..+|+|+|+|+.+++.++++ .+++.++.+|+..+|+ +++||+
T Consensus 52 ~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~-~~~fD~ 120 (279)
T 3ccf_A 52 LLNPQPGEFILDLGCGTGQLTEKIAQS--GAEVLGTDNAATMIEKARQN--------YPHLHFDVADARNFRV-DKPLDA 120 (279)
T ss_dssp HHCCCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHH--------CTTSCEEECCTTTCCC-SSCEEE
T ss_pred HhCCCCCCEEEEecCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHhh--------CCCCEEEECChhhCCc-CCCcCE
Confidence 345567889999999999999999984 45999999999999999886 4578899999999887 579999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHH----Hh------hhccCCCCCHHHHHHHHH
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR----ER------ILQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~l~~ll~ 305 (328)
|++..+++|++|+..+++++.++|||||++++.++.... ...+ ...+. .. ...+..+++.+++.++++
T Consensus 121 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (279)
T 3ccf_A 121 VFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGN-IKYI-LEALYNALETLGIHNPQALNPWYFPSIGEYVNILE 198 (279)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTT-THHH-HHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHH
T ss_pred EEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcc-hHHH-HHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHH
Confidence 999999999999999999999999999999999876532 1111 11111 11 123456789999999999
Q ss_pred HCCCeEEEEE
Q 020307 306 SCGLTNYTSK 315 (328)
Q Consensus 306 ~~Gf~~v~~~ 315 (328)
++||++++..
T Consensus 199 ~aGf~~~~~~ 208 (279)
T 3ccf_A 199 KQGFDVTYAA 208 (279)
T ss_dssp HHTEEEEEEE
T ss_pred HcCCEEEEEE
Confidence 9999988743
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=171.34 Aligned_cols=147 Identities=20% Similarity=0.162 Sum_probs=120.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.+++ ..++.++.+|+.++|+++++||+|
T Consensus 30 ~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~---------~~~~~~~~~d~~~~~~~~~~fD~v 98 (261)
T 3ege_A 30 LNLPKGSVIADIGAGTGGYSVALANQG--LFVYAVEPSIVMRQQAVV---------HPQVEWFTGYAENLALPDKSVDGV 98 (261)
T ss_dssp HCCCTTCEEEEETCTTSHHHHHHHTTT--CEEEEECSCHHHHHSSCC---------CTTEEEECCCTTSCCSCTTCBSEE
T ss_pred hCCCCCCEEEEEcCcccHHHHHHHhCC--CEEEEEeCCHHHHHHHHh---------ccCCEEEECchhhCCCCCCCEeEE
Confidence 445678899999999999999999854 499999999999988765 448999999999999989999999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH-hhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-RILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
++.++++|++++..+++++.++|| ||++++.++........+....+.. ....+..+++.+++. +++++||++++..
T Consensus 99 ~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~ 176 (261)
T 3ege_A 99 ISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAI 176 (261)
T ss_dssp EEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEE
T ss_pred EEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEE
Confidence 999999999999999999999999 9999999887654333332222221 122456778889999 9999999888754
Q ss_pred E
Q 020307 316 V 316 (328)
Q Consensus 316 ~ 316 (328)
.
T Consensus 177 ~ 177 (261)
T 3ege_A 177 P 177 (261)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=168.93 Aligned_cols=155 Identities=14% Similarity=0.161 Sum_probs=124.1
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
...++.+|||||||+|.++..+++..+ ..+|+|+|+|+.+++.+++++... ..++.++++|+.++++ +++||+|
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~v~~~~~d~~~~~~-~~~fD~v 93 (284)
T 3gu3_A 19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL----PYDSEFLEGDATEIEL-NDKYDIA 93 (284)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS----SSEEEEEESCTTTCCC-SSCEEEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc----CCceEEEEcchhhcCc-CCCeeEE
Confidence 445778999999999999999999866 369999999999999999988764 3389999999999887 4699999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEecc-----C----CCC------cchhhHHHHH-hhhccCCCCCHHHH
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR-----Y----TSS------TSLTGRVLRE-RILQNYNYLTEEEI 300 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~-----~----~~~------~~~~~~~~~~-~~~~~~~~~~~~~l 300 (328)
++..+++|++++..+++++.++|||||++++.+++. . ... ...+.+.+.. .......+.+.+++
T Consensus 94 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (284)
T 3gu3_A 94 ICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKI 173 (284)
T ss_dssp EEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTH
T ss_pred EECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHH
Confidence 999999999999999999999999999999999871 1 000 1111222222 11244566778899
Q ss_pred HHHHHHCCCeEEEEEEe
Q 020307 301 EDLCTSCGLTNYTSKVQ 317 (328)
Q Consensus 301 ~~ll~~~Gf~~v~~~~~ 317 (328)
.++++++||+.++....
T Consensus 174 ~~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 174 PIYLSELGVKNIECRVS 190 (284)
T ss_dssp HHHHHHTTCEEEEEEEC
T ss_pred HHHHHHcCCCeEEEEEc
Confidence 99999999998886443
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-20 Score=166.46 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=122.0
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.+++++...++ ..++.++.+|+.++| ++||+|
T Consensus 60 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~---~~fD~v 133 (287)
T 1kpg_A 60 LGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSEN--LRSKRVLLAGWEQFD---EPVDRI 133 (287)
T ss_dssp TTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCC--CSCEEEEESCGGGCC---CCCSEE
T ss_pred cCCCCcCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCC--CCCeEEEECChhhCC---CCeeEE
Confidence 445678899999999999999999543 23999999999999999999887654 468999999998776 789999
Q ss_pred EeccccccC--CChHHHHHHHHhcccCCcEEEEEEeccCCCCc------c------hhhHHHHHhhhccCCCCCHHHHHH
Q 020307 237 HAGAALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRYTSST------S------LTGRVLRERILQNYNYLTEEEIED 302 (328)
Q Consensus 237 ~~~~vl~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~------~~~~~~~~~~~~~~~~~~~~~l~~ 302 (328)
++..+++|+ .++..+++++.++|||||++++.++....... + .....+..........++.+++.+
T Consensus 134 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 213 (287)
T 1kpg_A 134 VSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQE 213 (287)
T ss_dssp EEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHH
T ss_pred EEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHH
Confidence 999999999 67899999999999999999999987642111 0 001111111223345679999999
Q ss_pred HHHHCCCeEEEEEE
Q 020307 303 LCTSCGLTNYTSKV 316 (328)
Q Consensus 303 ll~~~Gf~~v~~~~ 316 (328)
+++++||++++...
T Consensus 214 ~l~~aGf~~~~~~~ 227 (287)
T 1kpg_A 214 CASANGFTVTRVQS 227 (287)
T ss_dssp HHHTTTCEEEEEEE
T ss_pred HHHhCCcEEEEEEe
Confidence 99999999988543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=157.96 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=126.1
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.+++++...+ ..++.++.+|+..+++ +++||+|
T Consensus 28 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~-~~~~D~v 101 (199)
T 2xvm_A 28 VKVVKPGKTLDLGCGNGRNSLYLAANGY--DVDAWDKNAMSIANVERIKSIEN---LDNLHTRVVDLNNLTF-DRQYDFI 101 (199)
T ss_dssp TTTSCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT---CTTEEEEECCGGGCCC-CCCEEEE
T ss_pred hhccCCCeEEEEcCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhCC---CCCcEEEEcchhhCCC-CCCceEE
Confidence 4445678999999999999999999855 99999999999999999887655 4579999999998887 7899999
Q ss_pred EeccccccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 237 HAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 237 ~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
++..+++|++ ++..+++++.++|||||++++.++....... ....+...++.+++++++++ |++++.
T Consensus 102 ~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~--f~~~~~ 170 (199)
T 2xvm_A 102 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP---------CTVGFPFAFKEGELRRYYEG--WERVKY 170 (199)
T ss_dssp EEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC---------CCSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcC---------CCCCCCCccCHHHHHHHhcC--CeEEEe
Confidence 9999999998 7789999999999999998887765432211 01234567899999999987 988774
Q ss_pred EEe---------------CcEEEEEEeCC
Q 020307 315 KVQ---------------QSFIMFAAQKP 328 (328)
Q Consensus 315 ~~~---------------~~~~~~~a~k~ 328 (328)
... ..+..++++||
T Consensus 171 ~~~~~~~~~~~~~g~~~~~~~~~~~arK~ 199 (199)
T 2xvm_A 171 NEDVGELHRTDANGNRIKLRFATMLARKK 199 (199)
T ss_dssp ECCEEEEEEECTTSCEEEEEEEEEEEECC
T ss_pred cccceEEEeecCCCCeeeEEEEEEEEecC
Confidence 321 13567889987
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.85 E-value=7e-21 Score=165.79 Aligned_cols=143 Identities=13% Similarity=0.177 Sum_probs=118.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC--CCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~i~ 237 (328)
.++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++ ++.++.+|+.+. |+++++||+|+
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~-----------~~~~~~~d~~~~~~~~~~~~fD~i~ 106 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEGI--ESIGVDINEDMIKFCEG-----------KFNVVKSDAIEYLKSLPDKYLDGVM 106 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHHTC--CEEEECSCHHHHHHHHT-----------TSEEECSCHHHHHHTSCTTCBSEEE
T ss_pred cCCCeEEEEeCCCCHHHHHHHhCCC--cEEEEECCHHHHHHHHh-----------hcceeeccHHHHhhhcCCCCeeEEE
Confidence 4678999999999999999999866 89999999999999876 277888898765 77889999999
Q ss_pred eccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 238 AGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 238 ~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
+..+++|++++ ..+++++.++|||||++++.+++.... ..+ .. ....+.+..+++.+++.++++++||++++..
T Consensus 107 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~-~~--~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 182 (240)
T 3dli_A 107 ISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL-YSL-IN--FYIDPTHKKPVHPETLKFILEYLGFRDVKIE 182 (240)
T ss_dssp EESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH-HHH-HH--HTTSTTCCSCCCHHHHHHHHHHHTCEEEEEE
T ss_pred ECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh-HHH-HH--HhcCccccccCCHHHHHHHHHHCCCeEEEEE
Confidence 99999999966 899999999999999999999875421 111 11 1123467889999999999999999998866
Q ss_pred EeCc
Q 020307 316 VQQS 319 (328)
Q Consensus 316 ~~~~ 319 (328)
...+
T Consensus 183 ~~~~ 186 (240)
T 3dli_A 183 FFEE 186 (240)
T ss_dssp EECC
T ss_pred Eecc
Confidence 5543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-20 Score=169.81 Aligned_cols=162 Identities=17% Similarity=0.133 Sum_probs=129.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++++...++ ..++.++.+|+. .+++. +||+|++.
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~-~~~p~-~~D~v~~~ 242 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGL--SGRAQVVVGSFF-DPLPA-GAGGYVLS 242 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC--TTTEEEEECCTT-SCCCC-SCSEEEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCc--CcCeEEecCCCC-CCCCC-CCcEEEEe
Confidence 4567999999999999999999988889999999 9999999999887654 578999999996 34444 89999999
Q ss_pred cccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEe
Q 020307 240 AALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ 317 (328)
Q Consensus 240 ~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~ 317 (328)
+++||++++ .++|+++.++|||||++++.++..... .+.....+..........++.++|+++++++||++++....
T Consensus 243 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 321 (332)
T 3i53_A 243 AVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPI 321 (332)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred hhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-CccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEEC
Confidence 999999987 789999999999999999999766543 22111111111124456789999999999999999987665
Q ss_pred CcEEEEEEeC
Q 020307 318 QSFIMFAAQK 327 (328)
Q Consensus 318 ~~~~~~~a~k 327 (328)
..+.++.+++
T Consensus 322 ~~~~vie~r~ 331 (332)
T 3i53_A 322 SYVSIVEMTA 331 (332)
T ss_dssp SSSEEEEEEE
T ss_pred CCcEEEEEee
Confidence 5466777664
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.8e-20 Score=170.17 Aligned_cols=166 Identities=14% Similarity=0.137 Sum_probs=133.9
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++++...++ ..++.++.+|+.+.|+++. |+|
T Consensus 186 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~--D~v 260 (359)
T 1x19_A 186 AKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV--ADRMRGIAVDIYKESYPEA--DAV 260 (359)
T ss_dssp CCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC--TTTEEEEECCTTTSCCCCC--SEE
T ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCC--CCCEEEEeCccccCCCCCC--CEE
Confidence 3445678999999999999999999988889999999 9999999999887653 4569999999988776543 999
Q ss_pred EeccccccCCC--hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhh--h----ccCCCCCHHHHHHHHHHCC
Q 020307 237 HAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI--L----QNYNYLTEEEIEDLCTSCG 308 (328)
Q Consensus 237 ~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~l~~ll~~~G 308 (328)
++.+++||+++ ...+|+++.++|||||++++.++..+....+.....+ ... . ....+++.++|+++++++|
T Consensus 261 ~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~t~~e~~~ll~~aG 339 (359)
T 1x19_A 261 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLS-HYILGAGMPFSVLGFKEQARYKEILESLG 339 (359)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHH-HHGGGGGSSCCCCCCCCGGGHHHHHHHHT
T ss_pred EEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHH-HHHHhcCCCCcccCCCCHHHHHHHHHHCC
Confidence 99999999988 6789999999999999999998766533222222222 111 1 1233489999999999999
Q ss_pred CeEEEEEEeCcEEEEEEeCC
Q 020307 309 LTNYTSKVQQSFIMFAAQKP 328 (328)
Q Consensus 309 f~~v~~~~~~~~~~~~a~k~ 328 (328)
|++++........+++++||
T Consensus 340 f~~v~~~~~~~~~vi~a~kp 359 (359)
T 1x19_A 340 YKDVTMVRKYDHLLVQAVKP 359 (359)
T ss_dssp CEEEEEEEETTEEEEEEECC
T ss_pred CceEEEEecCCceEEEEeCC
Confidence 99988766557788999987
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-20 Score=167.68 Aligned_cols=154 Identities=12% Similarity=0.120 Sum_probs=123.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|++++...++ ..++.++.+|+.++ +++||+|
T Consensus 68 ~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~---~~~fD~v 141 (302)
T 3hem_A 68 LNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDS--PRRKEVRIQGWEEF---DEPVDRI 141 (302)
T ss_dssp TCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCC--SSCEEEEECCGGGC---CCCCSEE
T ss_pred cCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEECCHHHc---CCCccEE
Confidence 4456788999999999999999999832 5999999999999999999988664 45899999999876 6899999
Q ss_pred EeccccccCCCh---------HHHHHHHHhcccCCcEEEEEEeccCCCCcchh------------hHHHHHhhhccCCCC
Q 020307 237 HAGAALHCWPSP---------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLT------------GRVLRERILQNYNYL 295 (328)
Q Consensus 237 ~~~~vl~h~~d~---------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ 295 (328)
++..+++|++|| ..+++++.++|||||++++.++.......... ...+...........
T Consensus 142 ~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 221 (302)
T 3hem_A 142 VSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLP 221 (302)
T ss_dssp EEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCC
T ss_pred EEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCC
Confidence 999999999887 69999999999999999999987642211000 012222222334678
Q ss_pred CHHHHHHHHHHCCCeEEEEEE
Q 020307 296 TEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 296 ~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
+.+++.++++++||++++...
T Consensus 222 s~~~~~~~l~~aGf~~~~~~~ 242 (302)
T 3hem_A 222 RISQVDYYSSNAGWKVERYHR 242 (302)
T ss_dssp CHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHHHHHhCCcEEEEEEe
Confidence 899999999999999888644
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=165.16 Aligned_cols=147 Identities=15% Similarity=0.132 Sum_probs=118.0
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.++++ .+++.++.+|+..++ ++++||+|
T Consensus 29 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~--------~~~~~~~~~d~~~~~-~~~~fD~v 99 (259)
T 2p35_A 29 VPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR--------LPNTNFGKADLATWK-PAQKADLL 99 (259)
T ss_dssp CCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH--------STTSEEEECCTTTCC-CSSCEEEE
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh--------CCCcEEEECChhhcC-ccCCcCEE
Confidence 344567899999999999999999986666999999999999999986 457899999999988 78899999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHh------h----hccCCCCCHHHHHHHHHH
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER------I----LQNYNYLTEEEIEDLCTS 306 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~l~~ll~~ 306 (328)
++..+++|++++..+++++.++|||||++++.++.............+... . ..+..+++.+++.++|++
T Consensus 100 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (259)
T 2p35_A 100 YANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSP 179 (259)
T ss_dssp EEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHHGG
T ss_pred EEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHHHh
Confidence 999999999999999999999999999999999764321111011111110 0 235678999999999999
Q ss_pred CCCeEE
Q 020307 307 CGLTNY 312 (328)
Q Consensus 307 ~Gf~~v 312 (328)
+||++.
T Consensus 180 aGf~v~ 185 (259)
T 2p35_A 180 KSSRVD 185 (259)
T ss_dssp GEEEEE
T ss_pred cCCceE
Confidence 999743
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.85 E-value=9.9e-21 Score=164.79 Aligned_cols=161 Identities=17% Similarity=0.174 Sum_probs=125.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++....+ .++.++++|+..++++ ++||+|++..
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~--~~~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~-~~fD~v~~~~ 109 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQG----LKPRLACQDISNLNIN-RKFDLITCCL 109 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTT----CCCEEECCCGGGCCCS-CCEEEEEECT
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCC--cEEEEECCHHHHHHHHHHHhhcC----CCeEEEecccccCCcc-CCceEEEEcC
Confidence 678999999999999999999865 99999999999999999887643 2789999999988876 8899999998
Q ss_pred -ccccC---CChHHHHHHHHhcccCCcEEEEEEeccCCCCcc---------------hhhHH------------------
Q 020307 241 -ALHCW---PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTS---------------LTGRV------------------ 283 (328)
Q Consensus 241 -vl~h~---~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~---------------~~~~~------------------ 283 (328)
+++|+ .++..+|+++.++|||||++++..++....... .+...
T Consensus 110 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (246)
T 1y8c_A 110 DSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGE 189 (246)
T ss_dssp TGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSS
T ss_pred ccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCC
Confidence 99999 456789999999999999999977654210000 00000
Q ss_pred -HHH-hhhccCCCCCHHHHHHHHHHCCCeEEEEEEe---------CcEEEEEEeCC
Q 020307 284 -LRE-RILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ---------QSFIMFAAQKP 328 (328)
Q Consensus 284 -~~~-~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~---------~~~~~~~a~k~ 328 (328)
+.. ....+.++++.+++.++|+++||++++.... ...++++++||
T Consensus 190 ~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~ 245 (246)
T 1y8c_A 190 FYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG 245 (246)
T ss_dssp SEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred cccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEec
Confidence 000 0012457889999999999999999986543 24578888886
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-20 Score=161.84 Aligned_cols=152 Identities=22% Similarity=0.208 Sum_probs=119.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.+. .+++|+|+|+.+++.++++.. ..++.++.+|+..+++++++||+|
T Consensus 39 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 39 LPEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGP------DTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp SCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSC------SSSEEEEECCGGGCCCCTTCEEEE
T ss_pred ccccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcc------cCCceEEEcChhhccCCCCCceEE
Confidence 4455788999999999999999998853 389999999999999988643 237899999999888888899999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCC--CCc-chh-----------h---------HHHHHhhhccCC
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT--SST-SLT-----------G---------RVLRERILQNYN 293 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~--~~~-~~~-----------~---------~~~~~~~~~~~~ 293 (328)
++..+++|++++..+++++.++|||||++++.+++... ... .|. . ..+.. ...+..
T Consensus 112 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 190 (243)
T 3bkw_A 112 YSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLA-KGVVKH 190 (243)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHH-HSCCEE
T ss_pred EEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeecc-CceEEE
Confidence 99999999999999999999999999999998865320 000 000 0 00000 012334
Q ss_pred CCCHHHHHHHHHHCCCeEEEEEE
Q 020307 294 YLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 294 ~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
+++.+++.++|+++||++++...
T Consensus 191 ~~t~~~~~~~l~~aGF~~~~~~~ 213 (243)
T 3bkw_A 191 HRTVGTTLNALIRSGFAIEHVEE 213 (243)
T ss_dssp ECCHHHHHHHHHHTTCEEEEEEE
T ss_pred eccHHHHHHHHHHcCCEeeeecc
Confidence 47899999999999999988654
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-21 Score=171.44 Aligned_cols=149 Identities=9% Similarity=0.081 Sum_probs=111.0
Q ss_pred cCCCeEEEEcCCcCHHHH----HHHHhCCCceE--EEEeCCHHHHHHHHHHHHhcCcCCCCCeEE--EEecCCCCC----
Q 020307 160 AQGGLLVDVSCGSGLFSR----KFAKSGTYSGV--VALDFSENMLRQCYDFIKQDNTILTSNLAL--VRADVCRLP---- 227 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~----~l~~~~~~~~v--~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~--~~~d~~~lp---- 227 (328)
.++.+|||||||+|.++. .++..++...+ +|+|+|++|++.|++++..... ..++.+ ..++++.++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~ 128 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSN--LENVKFAWHKETSSEYQSRML 128 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSS--CTTEEEEEECSCHHHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccC--CCcceEEEEecchhhhhhhhc
Confidence 456799999999997554 44444555544 9999999999999998865311 345544 445554443
Q ss_pred --CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhh-----hccCCCCCHHHH
Q 020307 228 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI-----LQNYNYLTEEEI 300 (328)
Q Consensus 228 --~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l 300 (328)
+++++||+|++.+++||++|+..+|+++.++|||||++++.+...... + ...+.... ..+..+++.+++
T Consensus 129 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (292)
T 2aot_A 129 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSG---W-DKLWKKYGSRFPQDDLCQYITSDDL 204 (292)
T ss_dssp TTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSH---H-HHHHHHHGGGSCCCTTCCCCCHHHH
T ss_pred cccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCcc---H-HHHHHHHHHhccCCCcccCCCHHHH
Confidence 567899999999999999999999999999999999999987654322 1 22222211 135678999999
Q ss_pred HHHHHHCCCeEEEE
Q 020307 301 EDLCTSCGLTNYTS 314 (328)
Q Consensus 301 ~~ll~~~Gf~~v~~ 314 (328)
.++|+++||+++..
T Consensus 205 ~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 205 TQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHTCCEEEE
T ss_pred HHHHHHCCCceEEE
Confidence 99999999998763
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=161.11 Aligned_cols=148 Identities=20% Similarity=0.329 Sum_probs=122.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|.++..++.. +|+|+|+.+++.++++ ++.++.+|+..+++++++||+|++..
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~~fD~v~~~~ 110 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR----------GVFVLKGTAENLPLKDESFDFALMVT 110 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT----------TCEEEECBTTBCCSCTTCEEEEEEES
T ss_pred CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc----------CCEEEEcccccCCCCCCCeeEEEEcc
Confidence 3789999999999999887653 9999999999999873 67899999999988888999999999
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH-----hhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-----RILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
+++|++++..+|+++.++|||||++++.+++..... ...+.. ....+..+++.+++.++++++||++++..
T Consensus 111 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 186 (219)
T 1vlm_A 111 TICFVDDPERALKEAYRILKKGGYLIVGIVDRESFL----GREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 186 (219)
T ss_dssp CGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHH----HHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred hHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCccHH----HHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEe
Confidence 999999999999999999999999999998754321 111111 11245678999999999999999988864
Q ss_pred Ee---C-----------------cEEEEEEeCC
Q 020307 316 VQ---Q-----------------SFIMFAAQKP 328 (328)
Q Consensus 316 ~~---~-----------------~~~~~~a~k~ 328 (328)
.. . .|+++.|+|.
T Consensus 187 ~~~~~~p~~~~~~~~~~~~~~~~~~~~i~a~K~ 219 (219)
T 1vlm_A 187 QTLFKHPSELSEIEPVKEGYGEGAFVVIRGTKK 219 (219)
T ss_dssp EECCSCGGGCSSCCCCEESSSSSSEEEEEEECC
T ss_pred cccCCCCCccccchhhhcCCCCCeEEEEEecCC
Confidence 42 1 4788888884
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=167.73 Aligned_cols=164 Identities=12% Similarity=0.089 Sum_probs=133.8
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
...+..+|||||||+|.++..+++.+|..+++++|+ +.+++.|++++...++ ..++.++.+|+. .+++. .||+|+
T Consensus 199 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l--~~~v~~~~~d~~-~~~p~-~~D~v~ 273 (369)
T 3gwz_A 199 DFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGL--ADRCEILPGDFF-ETIPD-GADVYL 273 (369)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC--TTTEEEEECCTT-TCCCS-SCSEEE
T ss_pred CCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCc--CCceEEeccCCC-CCCCC-CceEEE
Confidence 345678999999999999999999988889999999 9999999999887664 578999999997 45555 799999
Q ss_pred eccccccCCChH--HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHH--HHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 238 AGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVL--RERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 238 ~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
+.+++||++++. ++|+++.++|||||++++.++.......+. ...+ ..........++.++|+++++++||++++
T Consensus 274 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 352 (369)
T 3gwz_A 274 IKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS-TLFVDLLLLVLVGGAERSESEFAALLEKSGLRVER 352 (369)
T ss_dssp EESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH-HHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEE
T ss_pred hhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc-hhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEE
Confidence 999999999886 799999999999999999998765433332 1111 11112445678999999999999999999
Q ss_pred EEE--eCcEEEEEEeC
Q 020307 314 SKV--QQSFIMFAAQK 327 (328)
Q Consensus 314 ~~~--~~~~~~~~a~k 327 (328)
... ...+.++.++|
T Consensus 353 ~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 353 SLPCGAGPVRIVEIRR 368 (369)
T ss_dssp EEECSSSSEEEEEEEE
T ss_pred EEECCCCCcEEEEEEe
Confidence 766 45678888876
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-21 Score=161.81 Aligned_cols=144 Identities=12% Similarity=0.093 Sum_probs=112.0
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCc---------CCCCCeEEEEecCCCCCC
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT---------ILTSNLALVRADVCRLPF 228 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~---------~~~~~i~~~~~d~~~lp~ 228 (328)
...++.+|||+|||+|..+..|++.+. +|+|+|+|+.|++.|+++...... ....++.++++|+.++++
T Consensus 19 ~~~~~~~vLD~GCG~G~~~~~la~~g~--~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~ 96 (203)
T 1pjz_A 19 NVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA 96 (203)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred ccCCCCEEEEeCCCCcHhHHHHHHCCC--eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCc
Confidence 345678999999999999999999976 999999999999999987642100 003579999999999987
Q ss_pred CC-CccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHH
Q 020307 229 AS-GFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 229 ~~-~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 305 (328)
.+ ++||+|++..+++|++.. ..+++++.++|||||++++.+...... ........++.+++.++++
T Consensus 97 ~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~-----------~~~~~~~~~~~~el~~~~~ 165 (203)
T 1pjz_A 97 RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQA-----------LLEGPPFSVPQTWLHRVMS 165 (203)
T ss_dssp HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSS-----------SSSSCCCCCCHHHHHHTSC
T ss_pred ccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcc-----------ccCCCCCCCCHHHHHHHhc
Confidence 65 799999999999999754 468999999999999966555433211 0112223478999999999
Q ss_pred HCCCeEEEEE
Q 020307 306 SCGLTNYTSK 315 (328)
Q Consensus 306 ~~Gf~~v~~~ 315 (328)
. ||+++...
T Consensus 166 ~-gf~i~~~~ 174 (203)
T 1pjz_A 166 G-NWEVTKVG 174 (203)
T ss_dssp S-SEEEEEEE
T ss_pred C-CcEEEEec
Confidence 9 99877643
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-21 Score=169.67 Aligned_cols=158 Identities=19% Similarity=0.200 Sum_probs=121.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++ ..++.++++|+.++++ +++||+|++.
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~-~~~fD~v~~~ 117 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRR--------NPDAVLHHGDMRDFSL-GRRFSAVTCM 117 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHH--------CTTSEEEECCTTTCCC-SCCEEEEEEC
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhh--------CCCCEEEECChHHCCc-cCCcCEEEEc
Confidence 3568999999999999999999876 999999999999999987 4578999999999887 7899999999
Q ss_pred c-ccccCCC---hHHHHHHHHhcccCCcEEEEEEeccCCCCcch-hh----------------------------HH---
Q 020307 240 A-ALHCWPS---PSNAVAEISRILRSGGVFVGTTFLRYTSSTSL-TG----------------------------RV--- 283 (328)
Q Consensus 240 ~-vl~h~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-~~----------------------------~~--- 283 (328)
. +++|+++ ...+|+++.++|||||++++.++..+....+. .. ..
T Consensus 118 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (263)
T 3pfg_A 118 FSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVA 197 (263)
T ss_dssp TTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEe
Confidence 8 9999974 45789999999999999999754332211000 00 00
Q ss_pred -----HHH-hhhccCCCCCHHHHHHHHHHCCCeEEEEEEe-CcEEEEEEeCC
Q 020307 284 -----LRE-RILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ-QSFIMFAAQKP 328 (328)
Q Consensus 284 -----~~~-~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~-~~~~~~~a~k~ 328 (328)
+.. ....+..+|+.+++.++|+++||++++.... ....+++++||
T Consensus 198 ~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K~ 249 (263)
T 3pfg_A 198 GPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLPG 249 (263)
T ss_dssp ETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEEC
T ss_pred cCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEecC
Confidence 000 0002366899999999999999998885332 22356777775
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-20 Score=157.19 Aligned_cols=133 Identities=26% Similarity=0.318 Sum_probs=110.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|.++..+ + ..+++|+|+|+.+++.++++ ..++.++.+|+.++|+++++||+|++..
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~-~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 103 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---P-YPQKVGVEPSEAMLAVGRRR--------APEATWVRAWGEALPFPGESFDVVLLFT 103 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---C-CSEEEEECCCHHHHHHHHHH--------CTTSEEECCCTTSCCSCSSCEEEEEEES
T ss_pred CCCeEEEECCCCCHhHHhC---C-CCeEEEEeCCHHHHHHHHHh--------CCCcEEEEcccccCCCCCCcEEEEEEcC
Confidence 6789999999999999887 2 22899999999999999986 3578899999999998889999999999
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH---hhhccCCCCCHHHHHHHHHHCC
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE---RILQNYNYLTEEEIEDLCTSCG 308 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~ll~~~G 308 (328)
+++|++++..+++++.++|||||++++.+++..+..... ...... ....|.++++.++++++++ |
T Consensus 104 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 104 TLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAAL-YRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp CTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTSHHHHH-HHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred hhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcCcHHHH-HHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 999999999999999999999999999998765322211 111111 1125778999999999999 7
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-20 Score=162.56 Aligned_cols=156 Identities=13% Similarity=0.187 Sum_probs=123.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHH------HHHHHHHHHHhcCcCCCCCeEEEEec---CCCC
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSEN------MLRQCYDFIKQDNTILTSNLALVRAD---VCRL 226 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~------~~~~a~~~~~~~~~~~~~~i~~~~~d---~~~l 226 (328)
+...++.+|||||||+|.++..+++. ++..+|+|+|+|+. +++.+++++...++ ..++.++.+| ...+
T Consensus 39 ~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~ 116 (275)
T 3bkx_A 39 WQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL--GDRLTVHFNTNLSDDLG 116 (275)
T ss_dssp HTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT--GGGEEEECSCCTTTCCG
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC--CCceEEEECChhhhccC
Confidence 44567889999999999999999998 46579999999997 99999999877553 3689999998 4566
Q ss_pred CCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhH---HHH-----Hh----hhccCCC
Q 020307 227 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR---VLR-----ER----ILQNYNY 294 (328)
Q Consensus 227 p~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~---~~~-----~~----~~~~~~~ 294 (328)
|+++++||+|++..+++|++++..+++.+.++++|||++++.++............ .+. .. ...+..+
T Consensus 117 ~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (275)
T 3bkx_A 117 PIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTL 196 (275)
T ss_dssp GGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCC
T ss_pred CCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcccccccccccc
Confidence 77789999999999999999999977777888888999999998764322111111 111 11 1234468
Q ss_pred CCHHHHHHHHHHCCCeEEEE
Q 020307 295 LTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 295 ~~~~~l~~ll~~~Gf~~v~~ 314 (328)
++.+++.++++++||++++.
T Consensus 197 ~s~~~l~~~l~~aGf~~~~~ 216 (275)
T 3bkx_A 197 ITPDTLAQIAHDNTWTYTAG 216 (275)
T ss_dssp CCHHHHHHHHHHHTCEEEEC
T ss_pred CCHHHHHHHHHHCCCeeEEE
Confidence 99999999999999998874
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-20 Score=160.50 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=116.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++...+. ..++.++++|+.+++ ++++||+|++..
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~-~~~~fD~v~~~~ 140 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPER--FVVGLDISESALAKANETYGSSPK--AEYFSFVKEDVFTWR-PTELFDLIFDYV 140 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTTE--EEEEECSCHHHHHHHHHHHTTSGG--GGGEEEECCCTTTCC-CSSCEEEEEEES
T ss_pred CCCCEEEeCCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHhhccCC--CcceEEEECchhcCC-CCCCeeEEEECh
Confidence 346999999999999999988654 899999999999999998875332 457999999999877 456999999999
Q ss_pred ccccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE
Q 020307 241 ALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 241 vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
+++|++ ++..+++++.++|||||++++.++...... ..+...++.+++.++++++||++++...
T Consensus 141 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 206 (235)
T 3lcc_A 141 FFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHV------------GGPPYKVDVSTFEEVLVPIGFKAVSVEE 206 (235)
T ss_dssp STTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCC------------SCSSCCCCHHHHHHHHGGGTEEEEEEEE
T ss_pred hhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccC------------CCCCccCCHHHHHHHHHHcCCeEEEEEe
Confidence 999998 888999999999999999999886543211 1233458999999999999999988644
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=164.73 Aligned_cols=148 Identities=20% Similarity=0.235 Sum_probs=117.9
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.+++++ ... ..++.++.+|+..+|+++++||+|++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~-~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~ 110 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARGY--RYIALDADAAMLEVFRQKI-AGV---DRKVQVVQADARAIPLPDESVHGVIV 110 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTTC--EEEEEESCHHHHHHHHHHT-TTS---CTTEEEEESCTTSCCSCTTCEEEEEE
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHh-hcc---CCceEEEEcccccCCCCCCCeeEEEE
Confidence 35678999999999999999998864 9999999999999999987 222 56899999999999988899999999
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcc--hhhHHHHH---hhh----ccCCCCCHHHHHHHHHHCCC
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTS--LTGRVLRE---RIL----QNYNYLTEEEIEDLCTSCGL 309 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~--~~~~~~~~---~~~----~~~~~~~~~~l~~ll~~~Gf 309 (328)
..+++|++++..+++++.++|||||++++...... ... .+...+.. ... .+..+++.+++.++++++||
T Consensus 111 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 188 (263)
T 2yqz_A 111 VHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQAE--ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGL 188 (263)
T ss_dssp ESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEEEC--CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred CCchhhcCCHHHHHHHHHHHCCCCcEEEEEecCCC--ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCC
Confidence 99999999999999999999999999998832221 111 01111111 111 13356788999999999999
Q ss_pred eEEEE
Q 020307 310 TNYTS 314 (328)
Q Consensus 310 ~~v~~ 314 (328)
+++..
T Consensus 189 ~~~~~ 193 (263)
T 2yqz_A 189 KPRTR 193 (263)
T ss_dssp CCEEE
T ss_pred CcceE
Confidence 97763
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=164.47 Aligned_cols=145 Identities=12% Similarity=0.143 Sum_probs=119.8
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.+++++...+ ..++.++.+|+..+++++++||+|++..
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 154 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG---KRVRNYFCCGLQDFTPEPDSYDVIWIQW 154 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG---GGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcC---CceEEEEEcChhhcCCCCCCEEEEEEcc
Confidence 57899999999999999998876 4599999999999999999876643 3468999999998888888999999999
Q ss_pred ccccCCChH--HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEe
Q 020307 241 ALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ 317 (328)
Q Consensus 241 vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~ 317 (328)
+++|++++. .+++++.++|||||++++.++.... ..... ...+...++.+++.++++++||++++....
T Consensus 155 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 225 (241)
T 2ex4_A 155 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE--GVILD------DVDSSVCRDLDVVRRIICSAGLSLLAEERQ 225 (241)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS--SEEEE------TTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC--cceec------ccCCcccCCHHHHHHHHHHcCCeEEEeeec
Confidence 999999865 8999999999999999999876543 11100 012223458999999999999999986553
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=157.09 Aligned_cols=160 Identities=18% Similarity=0.241 Sum_probs=122.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|.++..+++. .+++|+|+|+.+++.|+++.... ..++.++.+|+.+++++ ++||+|++..
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~-~~fD~v~~~~ 104 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMET----NRHVDFWVQDMRELELP-EPVDAITILC 104 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCGGGCCCS-SCEEEEEECT
T ss_pred CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhc----CCceEEEEcChhhcCCC-CCcCEEEEeC
Confidence 4689999999999999999887 39999999999999999988764 35789999999888865 7899999986
Q ss_pred -ccccCC---ChHHHHHHHHhcccCCcEEEEEEeccCCC--C---cc---------hh-hH--------------HH---
Q 020307 241 -ALHCWP---SPSNAVAEISRILRSGGVFVGTTFLRYTS--S---TS---------LT-GR--------------VL--- 284 (328)
Q Consensus 241 -vl~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~--~---~~---------~~-~~--------------~~--- 284 (328)
+++|+. ++..+++++.++|||||++++..++.... . .. .. .. .+
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (243)
T 3d2l_A 105 DSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEG 184 (243)
T ss_dssp TGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEEC
T ss_pred CchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEEEc
Confidence 999994 44688999999999999999977643200 0 00 00 00 00
Q ss_pred HH------hhhccCCCCCHHHHHHHHHHCCCeEEEEEEe---------CcEEEEEEeCC
Q 020307 285 RE------RILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ---------QSFIMFAAQKP 328 (328)
Q Consensus 285 ~~------~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~---------~~~~~~~a~k~ 328 (328)
.. ....+.++++.+++.++|+++||++++.... ....+++|+||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K~ 243 (243)
T 3d2l_A 185 EDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEKI 243 (243)
T ss_dssp TTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEEC
T ss_pred CCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEeC
Confidence 00 0012446799999999999999999886542 34578889986
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.83 E-value=9.7e-21 Score=167.38 Aligned_cols=162 Identities=20% Similarity=0.277 Sum_probs=117.7
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcC--C------------------------
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--L------------------------ 212 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~--~------------------------ 212 (328)
..++.+|||||||+|.++..++..+. .+|+|+|+|+.+++.|+++++..... +
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 34678999999999988777766652 37999999999999999876542100 0
Q ss_pred CCCeE-EEEecCCCC-CC---CCCccceEEeccccccC-C---ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHH
Q 020307 213 TSNLA-LVRADVCRL-PF---ASGFVDAVHAGAALHCW-P---SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV 283 (328)
Q Consensus 213 ~~~i~-~~~~d~~~l-p~---~~~~fD~i~~~~vl~h~-~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~ 283 (328)
..++. ++++|+.+. |+ ..++||+|+++.+|||+ + +...+++++.++|||||+|++.+........ .+
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~--~g-- 207 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYM--VG-- 207 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE--ET--
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccce--eC--
Confidence 01233 889999773 43 25789999999999996 3 4468999999999999999999864321110 00
Q ss_pred HHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeC-----------cEEEEEEeCC
Q 020307 284 LRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQ-----------SFIMFAAQKP 328 (328)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~-----------~~~~~~a~k~ 328 (328)
........++.+++.++|+++||++++..... .+++++|+|+
T Consensus 208 ---~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 260 (263)
T 2a14_A 208 ---KREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK 260 (263)
T ss_dssp ---TEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred ---CeEeeccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEec
Confidence 00122346799999999999999988865432 5678888874
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-20 Score=161.21 Aligned_cols=160 Identities=16% Similarity=0.189 Sum_probs=121.1
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC---CCC-CCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFA-SGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p~~-~~~ 232 (328)
+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++ .++.+..+|+..+ ++. +++
T Consensus 48 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 116 (227)
T 3e8s_A 48 ILGRQPERVLDLGCGEGWLLRALADRGI--EAVGVDGDRTLVDAARAA---------GAGEVHLASYAQLAEAKVPVGKD 116 (227)
T ss_dssp HHHTCCSEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHT---------CSSCEEECCHHHHHTTCSCCCCC
T ss_pred hhcCCCCEEEEeCCCCCHHHHHHHHCCC--EEEEEcCCHHHHHHHHHh---------cccccchhhHHhhcccccccCCC
Confidence 4445678999999999999999999865 999999999999999884 4667888887665 444 445
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcc-----hhhHHHHH----hhhccCCCCCHHHHHHH
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTS-----LTGRVLRE----RILQNYNYLTEEEIEDL 303 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-----~~~~~~~~----~~~~~~~~~~~~~l~~l 303 (328)
||+|++..+++ ..++..+++++.++|||||++++.+++....... +....+.. ....+..+++.+++.++
T Consensus 117 fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (227)
T 3e8s_A 117 YDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNA 195 (227)
T ss_dssp EEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHH
T ss_pred ccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHH
Confidence 99999999999 8899999999999999999999999876432211 00000000 01233456799999999
Q ss_pred HHHCCCeEEEEEEe-------CcEEEEEEeCC
Q 020307 304 CTSCGLTNYTSKVQ-------QSFIMFAAQKP 328 (328)
Q Consensus 304 l~~~Gf~~v~~~~~-------~~~~~~~a~k~ 328 (328)
|+++||++++.... ..-.+++++||
T Consensus 196 l~~aGf~~~~~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 196 LDMAGLRLVSLQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp HHHTTEEEEEEECCCCTTCSSCSCEEEEEEEC
T ss_pred HHHcCCeEEEEecCCCCCCCCceeEEEEeecC
Confidence 99999999986441 11366777775
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=164.53 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=121.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.+++++...++ ..++.++.+|+.++| ++||+
T Consensus 86 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~---~~fD~ 158 (318)
T 2fk8_A 86 LDLKPGMTLLDIGCGWGTTMRRAVERFDV--NVIGLTLSKNQHARCEQVLASIDT--NRSRQVLLQGWEDFA---EPVDR 158 (318)
T ss_dssp SCCCTTCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHTSCC--SSCEEEEESCGGGCC---CCCSE
T ss_pred cCCCCcCEEEEEcccchHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CCceEEEECChHHCC---CCcCE
Confidence 44567889999999999999999988 54 999999999999999999887653 457999999998775 68999
Q ss_pred EEeccccccC--CChHHHHHHHHhcccCCcEEEEEEeccCCCCc------ch------hhHHHHHhhhccCCCCCHHHHH
Q 020307 236 VHAGAALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRYTSST------SL------TGRVLRERILQNYNYLTEEEIE 301 (328)
Q Consensus 236 i~~~~vl~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~~------~~~~~~~~~~~~~~~~~~~~l~ 301 (328)
|++..+++|+ +++..+++++.++|||||++++.++....... +. ....+...........+.+++.
T Consensus 159 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 238 (318)
T 2fk8_A 159 IVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMV 238 (318)
T ss_dssp EEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHH
T ss_pred EEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHH
Confidence 9999999999 57889999999999999999999987653111 00 0011111111334567999999
Q ss_pred HHHHHCCCeEEEEE
Q 020307 302 DLCTSCGLTNYTSK 315 (328)
Q Consensus 302 ~ll~~~Gf~~v~~~ 315 (328)
++++++||++++..
T Consensus 239 ~~l~~aGf~~~~~~ 252 (318)
T 2fk8_A 239 EHGEKAGFTVPEPL 252 (318)
T ss_dssp HHHHHTTCBCCCCE
T ss_pred HHHHhCCCEEEEEE
Confidence 99999999987743
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-19 Score=165.56 Aligned_cols=166 Identities=14% Similarity=0.173 Sum_probs=126.2
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.++..+++++|+ +.+++.|++++...++ ..++.++.+|+.+ +++. .||+|
T Consensus 178 ~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~-~~~~-~~D~v 252 (374)
T 1qzz_A 178 YDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL--ADRVTVAEGDFFK-PLPV-TADVV 252 (374)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC--TTTEEEEECCTTS-CCSC-CEEEE
T ss_pred CCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCC--CCceEEEeCCCCC-cCCC-CCCEE
Confidence 3445678999999999999999999988889999999 9999999999887653 4589999999865 3433 49999
Q ss_pred EeccccccCCChH--HHHHHHHhcccCCcEEEEEEe--ccCCCCcchhhHHHHH--hhhccCCCCCHHHHHHHHHHCCCe
Q 020307 237 HAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTF--LRYTSSTSLTGRVLRE--RILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 237 ~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
++.+++||++++. .+|+++.++|||||++++.++ .......+.....+.. ....+...++.+++.++++++||+
T Consensus 253 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 332 (374)
T 1qzz_A 253 LLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLA 332 (374)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEE
T ss_pred EEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCc
Confidence 9999999999885 899999999999999999887 4322111111111111 111235678999999999999999
Q ss_pred EEEEEEeCc-E-----EEEEEeC
Q 020307 311 NYTSKVQQS-F-----IMFAAQK 327 (328)
Q Consensus 311 ~v~~~~~~~-~-----~~~~a~k 327 (328)
+++....+. + .++.++|
T Consensus 333 ~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 333 LASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp EEEEEEECCSSCSSCEEEEEEEE
T ss_pred eEEEEECCCCcccCCcEEEEEEE
Confidence 888655433 3 6677765
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-19 Score=164.26 Aligned_cols=167 Identities=16% Similarity=0.227 Sum_probs=129.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.++..+++++|+ +.+++.+++++...++ ..++.++.+|+.+ +++. .||+|
T Consensus 179 ~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~-~~~~-~~D~v 253 (360)
T 1tw3_A 179 YDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL--SDRVDVVEGDFFE-PLPR-KADAI 253 (360)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC--TTTEEEEECCTTS-CCSS-CEEEE
T ss_pred CCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCC--CCceEEEeCCCCC-CCCC-CccEE
Confidence 3445678999999999999999999988889999999 9999999999887653 4589999999865 3334 49999
Q ss_pred EeccccccCCCh--HHHHHHHHhcccCCcEEEEEEec-cCCCCcchhhHHHHH--hhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 237 HAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFL-RYTSSTSLTGRVLRE--RILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 237 ~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
++.+++||++++ ..+++++.++|||||++++.++. .+....+.....+.. ....+...++.++++++++++||++
T Consensus 254 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 333 (360)
T 1tw3_A 254 ILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVV 333 (360)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEE
T ss_pred EEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeE
Confidence 999999999988 48999999999999999999876 322111111111111 1112456789999999999999998
Q ss_pred EEEEEe-Cc-----EEEEEEeCC
Q 020307 312 YTSKVQ-QS-----FIMFAAQKP 328 (328)
Q Consensus 312 v~~~~~-~~-----~~~~~a~k~ 328 (328)
++.... .. +.++.++|+
T Consensus 334 ~~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 334 EEVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp EEEEEEECSSSSCEEEEEEEEEC
T ss_pred EEEEeCCCCcccCccEEEEEEeC
Confidence 886554 32 677888764
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=164.15 Aligned_cols=165 Identities=14% Similarity=0.181 Sum_probs=130.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++..+..+++++|++ .+++.|++++...++ ..++.++.+|+.+.+++++ ||+|++.
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~-~D~v~~~ 239 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGV--ASRYHTIAGSAFEVDYGND-YDLVLLP 239 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTC--GGGEEEEESCTTTSCCCSC-EEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCC--CcceEEEecccccCCCCCC-CcEEEEc
Confidence 56789999999999999999999877899999999 999999999877653 3479999999988776554 9999999
Q ss_pred cccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCC-CcchhhHHHH---HhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 240 AALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTS-STSLTGRVLR---ERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 240 ~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
++++|++++ ..+|+++.++|||||++++.++..... ..+.....+. .....+...++.+++.++++++||+.++
T Consensus 240 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~ 319 (335)
T 2r3s_A 240 NFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQ 319 (335)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEE
T ss_pred chhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeee
Confidence 999999766 689999999999999999999876532 2222111111 1111356789999999999999999988
Q ss_pred EEEe-CcEEEEEEeCC
Q 020307 314 SKVQ-QSFIMFAAQKP 328 (328)
Q Consensus 314 ~~~~-~~~~~~~a~k~ 328 (328)
.... +.+.++.+++|
T Consensus 320 ~~~~~~~~~~i~~~~~ 335 (335)
T 2r3s_A 320 LHSLPTTQQQVIVAYK 335 (335)
T ss_dssp EECCTTSSSEEEEEEC
T ss_pred EEECCCCceeEEEecC
Confidence 6543 33455666654
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.7e-20 Score=161.95 Aligned_cols=161 Identities=17% Similarity=0.275 Sum_probs=123.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcC--------------C------------C
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--------------L------------T 213 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~--------------~------------~ 213 (328)
.++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.+++++...+.. . .
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4567999999999999999888764 58999999999999999887542100 0 0
Q ss_pred CCe-EEEEecCCCCC-CCC---CccceEEeccccc----cCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHH
Q 020307 214 SNL-ALVRADVCRLP-FAS---GFVDAVHAGAALH----CWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVL 284 (328)
Q Consensus 214 ~~i-~~~~~d~~~lp-~~~---~~fD~i~~~~vl~----h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~ 284 (328)
.++ .++.+|+.+.+ +++ ++||+|++..+++ |++++..+++++.++|||||++++.++....... .
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~-~----- 207 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYM-I----- 207 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE-E-----
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEE-c-----
Confidence 027 89999998754 345 7999999999999 6667789999999999999999998865431100 0
Q ss_pred HHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeC-----------cEEEEEEeCC
Q 020307 285 RERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQ-----------SFIMFAAQKP 328 (328)
Q Consensus 285 ~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~-----------~~~~~~a~k~ 328 (328)
.....+...++.+++.++++++||++++..... .+++++++|+
T Consensus 208 -~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 261 (265)
T 2i62_A 208 -GEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKP 261 (265)
T ss_dssp -TTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECC
T ss_pred -CCccccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEeccc
Confidence 011123457899999999999999998865543 4677888885
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-20 Score=159.54 Aligned_cols=158 Identities=20% Similarity=0.214 Sum_probs=121.8
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe-
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA- 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~- 238 (328)
.++.+|||+|||+|.++..+++.++ +++|+|+|+.+++.++++ ..++.++.+|+..+++ +++||+|++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~-~~~~D~v~~~ 107 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKR--------LPDATLHQGDMRDFRL-GRKFSAVVSM 107 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHH--------CTTCEEEECCTTTCCC-SSCEEEEEEC
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHh--------CCCCEEEECCHHHccc-CCCCcEEEEc
Confidence 4678999999999999999999976 999999999999999986 4578999999998887 678999995
Q ss_pred ccccccCCCh---HHHHHHHHhcccCCcEEEEEEeccCCCCcch---------------------------------hhH
Q 020307 239 GAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLRYTSSTSL---------------------------------TGR 282 (328)
Q Consensus 239 ~~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~---------------------------------~~~ 282 (328)
..+++|++++ ..+|+++.++|||||++++.++.......+. ...
T Consensus 108 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (239)
T 3bxo_A 108 FSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVA 187 (239)
T ss_dssp TTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEe
Confidence 5599999654 6889999999999999999876554221100 000
Q ss_pred HHHH-----hhhccCCCCCHHHHHHHHHHCCCeEEEEEEe-CcEEEEEEeCC
Q 020307 283 VLRE-----RILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ-QSFIMFAAQKP 328 (328)
Q Consensus 283 ~~~~-----~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~-~~~~~~~a~k~ 328 (328)
.-.. ....+..+++.++++++|+++||+++..... ....+++|+||
T Consensus 188 ~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K~ 239 (239)
T 3bxo_A 188 DPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVPA 239 (239)
T ss_dssp ETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEEC
T ss_pred cCCCcceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEecC
Confidence 0000 0012446899999999999999976664332 34578888886
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=161.70 Aligned_cols=114 Identities=22% Similarity=0.249 Sum_probs=98.1
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcC-CCCCeEEEEecCCCCC---CCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-LTSNLALVRADVCRLP---FASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~~~i~~~~~d~~~lp---~~~~~ 232 (328)
+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|+++....+.. ...++.+..+|+..++ +++++
T Consensus 53 l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 130 (293)
T 3thr_A 53 LRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDG 130 (293)
T ss_dssp HHHTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTC
T ss_pred hcccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCC
Confidence 4455778999999999999999999976 9999999999999999876432210 0247889999998887 78899
Q ss_pred cceEEec-cccccCCC-------hHHHHHHHHhcccCCcEEEEEEecc
Q 020307 233 VDAVHAG-AALHCWPS-------PSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 233 fD~i~~~-~vl~h~~d-------~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
||+|++. .+++|+++ +..+++++.++|||||++++.+++.
T Consensus 131 fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (293)
T 3thr_A 131 FDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 178 (293)
T ss_dssp EEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred eEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence 9999998 89999999 8999999999999999999998764
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-19 Score=157.00 Aligned_cols=142 Identities=18% Similarity=0.183 Sum_probs=111.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh----------cCc----CCCCCeEEEEecCCC
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ----------DNT----ILTSNLALVRADVCR 225 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~----------~~~----~~~~~i~~~~~d~~~ 225 (328)
.++.+|||+|||+|..+..|++.|. +|+|+|+|+.+++.|+++... .+. ....++.++++|+.+
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGH--TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 4678999999999999999999976 999999999999999876531 000 003589999999999
Q ss_pred CCCCC-CccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHH
Q 020307 226 LPFAS-GFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIED 302 (328)
Q Consensus 226 lp~~~-~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 302 (328)
+++.+ ++||+|++..+++|++.+ ..+++++.++|||||++++.+....... .......++++++.+
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~-----------~~g~~~~~~~~el~~ 213 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK-----------HAGPPFYVPSAELKR 213 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS-----------CCCSSCCCCHHHHHH
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc-----------CCCCCCCCCHHHHHH
Confidence 98764 899999999999999754 5789999999999999987665432110 011223479999999
Q ss_pred HHHHCCCeEEEEE
Q 020307 303 LCTSCGLTNYTSK 315 (328)
Q Consensus 303 ll~~~Gf~~v~~~ 315 (328)
+++. +|+++...
T Consensus 214 ~l~~-~f~v~~~~ 225 (252)
T 2gb4_A 214 LFGT-KCSMQCLE 225 (252)
T ss_dssp HHTT-TEEEEEEE
T ss_pred HhhC-CeEEEEEe
Confidence 9988 59887654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=163.05 Aligned_cols=164 Identities=15% Similarity=0.204 Sum_probs=121.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec-
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG- 239 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~- 239 (328)
++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|++++...+.....++.++++|+.++++ +++||+|++.
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~ 158 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDLGW--EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISS 158 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTTTC--CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECH
T ss_pred CCCcEEEEeccCCHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECC
Confidence 345999999999999999999865 999999999999999999876431001589999999999887 6899999865
Q ss_pred cccccCCC--hHHHHHHHHhcccCCcEEEEEEeccCCCCcchh----------hHHHHH---------------------
Q 020307 240 AALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT----------GRVLRE--------------------- 286 (328)
Q Consensus 240 ~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~----------~~~~~~--------------------- 286 (328)
.+++|++. ...+|+++.++|||||++++.+++......... +..+..
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (299)
T 3g2m_A 159 GSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPADET 238 (299)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEEEEEEEESCC-
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEEEEEEEeccCC
Confidence 55666652 478999999999999999999987652100000 000000
Q ss_pred -----hhhccCCCCCHHHHHHHHHHCCCeEEEEEEeC-------cEEEEEEeC
Q 020307 287 -----RILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQ-------SFIMFAAQK 327 (328)
Q Consensus 287 -----~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~-------~~~~~~a~k 327 (328)
....+.++|+.+++.++|+++||++++..... ...++.+.+
T Consensus 239 ~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~~ 291 (299)
T 3g2m_A 239 TDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAVM 291 (299)
T ss_dssp -CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEEC
T ss_pred CCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehhh
Confidence 01133457899999999999999999865432 246666654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.5e-20 Score=157.45 Aligned_cols=160 Identities=20% Similarity=0.252 Sum_probs=120.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|.++..+++.++ +++|+|+|+.+++.++++.... ..++.++.+|+.++++++++||+|++..
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 111 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR----ESNVEFIVGDARKLSFEDKTFDYVIFID 111 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCTTSCCSCTTCEEEEEEES
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc----CCCceEEECchhcCCCCCCcEEEEEEcC
Confidence 477999999999999999999987 9999999999999999988764 3689999999999888888999999999
Q ss_pred c--cccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhH-----HH-HHhh-h-------------------ccC
Q 020307 241 A--LHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR-----VL-RERI-L-------------------QNY 292 (328)
Q Consensus 241 v--l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~-----~~-~~~~-~-------------------~~~ 292 (328)
+ ++|.+++..+++++.++|||||++++.+++........... .+ .... + .+.
T Consensus 112 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (227)
T 1ve3_A 112 SIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRF 191 (227)
T ss_dssp CGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEE
T ss_pred chHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeeh
Confidence 9 55556778999999999999999999988643211111000 00 0000 0 011
Q ss_pred CCCCHHHHHHHHHHCCCeEEEEEEeCcE-EEEEEeC
Q 020307 293 NYLTEEEIEDLCTSCGLTNYTSKVQQSF-IMFAAQK 327 (328)
Q Consensus 293 ~~~~~~~l~~ll~~~Gf~~v~~~~~~~~-~~~~a~k 327 (328)
..++. ++.++|+++||+.++....+.+ +++...|
T Consensus 192 ~~w~~-~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 192 NVWGK-TGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp ECCCH-HHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred hhhch-HHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 23334 8899999999999987766644 4444443
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=165.81 Aligned_cols=163 Identities=11% Similarity=0.096 Sum_probs=126.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC--CCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~i~ 237 (328)
.+..+|||||||+|.++..+++.+|..+++++|+ +.+++.|++++...++ ..++.++.+|+... |++ ++||+|+
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~p-~~~D~v~ 253 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSG--SERIHGHGANLLDRDVPFP-TGFDAVW 253 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTT--GGGEEEEECCCCSSSCCCC-CCCSEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCc--ccceEEEEccccccCCCCC-CCcCEEE
Confidence 4568999999999999999999988889999999 9999999999877553 45899999999875 455 7899999
Q ss_pred eccccccCCChH--HHHHHHHhcccCCcEEEEEEeccCCCCcchh-h-HHHHH-----hhhccCCCCCHHHHHHHHHHCC
Q 020307 238 AGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLT-G-RVLRE-----RILQNYNYLTEEEIEDLCTSCG 308 (328)
Q Consensus 238 ~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-~-~~~~~-----~~~~~~~~~~~~~l~~ll~~~G 308 (328)
+.+++||++++. .+|+++.++|||||++++.++.......... . ..... ........++.++++++++++|
T Consensus 254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AG 333 (363)
T 3dp7_A 254 MSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAG 333 (363)
T ss_dssp EESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTT
T ss_pred EechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcC
Confidence 999999998874 7899999999999999999976543222110 0 00011 1123445779999999999999
Q ss_pred CeEEEEEEe--CcEEEEEEe
Q 020307 309 LTNYTSKVQ--QSFIMFAAQ 326 (328)
Q Consensus 309 f~~v~~~~~--~~~~~~~a~ 326 (328)
|++++.... ....++.++
T Consensus 334 f~~v~~~~~~g~~~svi~~~ 353 (363)
T 3dp7_A 334 LEVEEIQDNIGLGHSILQCR 353 (363)
T ss_dssp EEESCCCCCBTTTBEEEEEE
T ss_pred CeEEEEEeCCCCCceEEEEe
Confidence 998886532 224555554
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-19 Score=148.33 Aligned_cols=139 Identities=17% Similarity=0.175 Sum_probs=118.7
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++ ..++.++.+|+..+++++++||+|++.
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~~~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~~~D~i~~~ 114 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQGH--DVLGTDLDPILIDYAKQD--------FPEARWVVGDLSVDQISETDFDLIVSA 114 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--------CTTSEEEECCTTTSCCCCCCEEEEEEC
T ss_pred cCCCeEEEECCCCCHHHHHHHHCCC--cEEEEcCCHHHHHHHHHh--------CCCCcEEEcccccCCCCCCceeEEEEC
Confidence 4678999999999999999999865 999999999999999986 457899999999888888899999998
Q ss_pred -cccccCCC--hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE
Q 020307 240 -AALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 240 -~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
.+++|++. ...+++++.++|||||++++..+... .++.+++.++++++||++++...
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~--------------------~~~~~~~~~~l~~~Gf~~~~~~~ 174 (195)
T 3cgg_A 115 GNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR--------------------GWVFGDFLEVAERVGLELENAFE 174 (195)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS--------------------SCCHHHHHHHHHHHTEEEEEEES
T ss_pred CcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC--------------------CcCHHHHHHHHHHcCCEEeeeec
Confidence 78999854 47899999999999999999875432 26889999999999999887543
Q ss_pred ---------eCcEEEEEEeCC
Q 020307 317 ---------QQSFIMFAAQKP 328 (328)
Q Consensus 317 ---------~~~~~~~~a~k~ 328 (328)
...+++++++|+
T Consensus 175 ~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 175 SWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp STTCCBCCTTCSEEEEEEEEC
T ss_pred ccccCcCCCCCcEEEEEEecC
Confidence 245688888875
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.5e-19 Score=160.88 Aligned_cols=160 Identities=18% Similarity=0.087 Sum_probs=127.3
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecccc
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 242 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl 242 (328)
.+|||+|||+|.++..+++..|..+++++|+ +.+++.+++++...++ ..++.++.+|+.+ +++ ++||+|++.+++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl 243 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLA--GERVSLVGGDMLQ-EVP-SNGDIYLLSRII 243 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHH--TTSEEEEESCTTT-CCC-SSCSEEEEESCG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCC--CCcEEEecCCCCC-CCC-CCCCEEEEchhc
Confidence 8999999999999999999988889999999 9999999998765543 4689999999977 554 579999999999
Q ss_pred ccCCChH--HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH--hhhccCCCCCHHHHHHHHHHCCCeEEEEEEe-
Q 020307 243 HCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE--RILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ- 317 (328)
Q Consensus 243 ~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~- 317 (328)
||++++. .+|+++.++|||||++++.++..+....+.....+.- ........++.++|+++++++||++++....
T Consensus 244 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 323 (334)
T 2ip2_A 244 GDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLP 323 (334)
T ss_dssp GGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEET
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEECC
Confidence 9998876 8999999999999999999876543322221111111 1112345679999999999999999886554
Q ss_pred CcEEEEEEeC
Q 020307 318 QSFIMFAAQK 327 (328)
Q Consensus 318 ~~~~~~~a~k 327 (328)
....++.++|
T Consensus 324 ~~~~~i~~~~ 333 (334)
T 2ip2_A 324 METRMIVAAR 333 (334)
T ss_dssp TTEEEEEEEE
T ss_pred CCCEEEEEEe
Confidence 4567788876
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-19 Score=152.83 Aligned_cols=143 Identities=15% Similarity=0.219 Sum_probs=115.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC--CCCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~--lp~~~~~fD~i~ 237 (328)
.++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.++++ ...++.+|+.. .++++++||+|+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~~~~~~~~~~~~----------~~~~~~~d~~~~~~~~~~~~fD~v~ 98 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG--TRVSGIEAFPEAAEQAKEK----------LDHVVLGDIETMDMPYEEEQFDCVI 98 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT--CEEEEEESSHHHHHHHHTT----------SSEEEESCTTTCCCCSCTTCEEEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHh----------CCcEEEcchhhcCCCCCCCccCEEE
Confidence 467899999999999999999884 5999999999999998863 23688899876 667788999999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHh---------hhccCCCCCHHHHHHHHHHCC
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER---------ILQNYNYLTEEEIEDLCTSCG 308 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~ll~~~G 308 (328)
+..+++|++++..+++++.++|||||++++.+++... .......+... ...|..+++.+++.++++++|
T Consensus 99 ~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 176 (230)
T 3cc8_A 99 FGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSH--ISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAG 176 (230)
T ss_dssp EESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTS--HHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTT
T ss_pred ECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcch--HHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcC
Confidence 9999999999999999999999999999999987532 11111111111 124567899999999999999
Q ss_pred CeEEEEEE
Q 020307 309 LTNYTSKV 316 (328)
Q Consensus 309 f~~v~~~~ 316 (328)
|++++...
T Consensus 177 f~~~~~~~ 184 (230)
T 3cc8_A 177 YSISKVDR 184 (230)
T ss_dssp EEEEEEEE
T ss_pred CeEEEEEe
Confidence 99887544
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.1e-20 Score=160.68 Aligned_cols=101 Identities=28% Similarity=0.319 Sum_probs=91.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
.+.+|||||||+|.++..|++.+. +|+|+|+|+.|++.|++ .+++.++++|++++|+++++||+|++..
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~---------~~~v~~~~~~~e~~~~~~~sfD~v~~~~ 107 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALR---------HPRVTYAVAPAEDTGLPPASVDVAIAAQ 107 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCC---------CTTEEEEECCTTCCCCCSSCEEEEEECS
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhh---------cCCceeehhhhhhhcccCCcccEEEEee
Confidence 456999999999999999999876 99999999999988764 6789999999999999999999999999
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
++||+ ++.++++++.|+|||||+|++..+...
T Consensus 108 ~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 108 AMHWF-DLDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp CCTTC-CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred ehhHh-hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 99776 688999999999999999999887653
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.8e-19 Score=161.37 Aligned_cols=162 Identities=15% Similarity=0.139 Sum_probs=121.4
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
...++.+|||||||+|.++..+++..+..+++++|++ .++. +++....+. ..++.++.+|+. .+++ +||+|+
T Consensus 181 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~--~~~v~~~~~d~~-~~~p--~~D~v~ 252 (348)
T 3lst_A 181 DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDV--AGRWKVVEGDFL-REVP--HADVHV 252 (348)
T ss_dssp CCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGG--TTSEEEEECCTT-TCCC--CCSEEE
T ss_pred CccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCC--CCCeEEEecCCC-CCCC--CCcEEE
Confidence 3456789999999999999999999888899999994 4444 322222222 467999999996 3444 899999
Q ss_pred eccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHH--HhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 238 AGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR--ERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 238 ~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
+.+++||++++ ..+|+++.++|||||++++.++.......+.....+. .........++.++|+++++++||++++
T Consensus 253 ~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 332 (348)
T 3lst_A 253 LKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDR 332 (348)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred EehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEE
Confidence 99999999998 6999999999999999999997665433332111111 1112445578999999999999999998
Q ss_pred EEEeCc-EEEEEEeC
Q 020307 314 SKVQQS-FIMFAAQK 327 (328)
Q Consensus 314 ~~~~~~-~~~~~a~k 327 (328)
...... +.++.++|
T Consensus 333 ~~~~~~~~~vie~~p 347 (348)
T 3lst_A 333 VVGTSSVMSIAVGVP 347 (348)
T ss_dssp EEECSSSCEEEEEEE
T ss_pred EEECCCCcEEEEEEe
Confidence 766433 46666664
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-19 Score=157.91 Aligned_cols=154 Identities=19% Similarity=0.177 Sum_probs=119.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-CCCccceEEe
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~i~~ 238 (328)
.++.+|||+|||+|.++..+++.+ ..+++|+|+|+.+++.|++++...+. ..++.++++|+..+++ .+++||+|++
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~v~~ 139 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKR--RFKVFFRAQDSYGRHMDLGKEFDVISS 139 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCC--SSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCC--CccEEEEECCccccccCCCCCcCEEEE
Confidence 467899999999999999988875 45899999999999999999877543 3578999999998887 5789999999
Q ss_pred cccccc----CCChHHHHHHHHhcccCCcEEEEEEeccCCCCc----------------------ch-hhHHHH-----H
Q 020307 239 GAALHC----WPSPSNAVAEISRILRSGGVFVGTTFLRYTSST----------------------SL-TGRVLR-----E 286 (328)
Q Consensus 239 ~~vl~h----~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~----------------------~~-~~~~~~-----~ 286 (328)
..+++| ..++..+|+++.++|||||++++.+++...... +. .+..+. .
T Consensus 140 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 219 (298)
T 1ri5_A 140 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDS 219 (298)
T ss_dssp ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTS
T ss_pred CchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchh
Confidence 999977 456789999999999999999999987431000 00 000000 0
Q ss_pred hhhccCCCCCHHHHHHHHHHCCCeEEEEEE
Q 020307 287 RILQNYNYLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 287 ~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
....+..+++.++++++++++||++++...
T Consensus 220 ~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~ 249 (298)
T 1ri5_A 220 VNNCIEYFVDFTRMVDGFKRLGLSLVERKG 249 (298)
T ss_dssp CSSEEEECCCHHHHHHHHHTTTEEEEEEEE
T ss_pred hcCCcccccCHHHHHHHHHHcCCEEEEecC
Confidence 001123578999999999999999988644
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=155.38 Aligned_cols=154 Identities=15% Similarity=0.147 Sum_probs=123.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++...+ . ++.++.+|+..+++ +++||+|
T Consensus 116 ~~~~~~~~vLD~GcG~G~~~~~l~~~g~--~v~~vD~s~~~~~~a~~~~~~~~---~-~~~~~~~d~~~~~~-~~~fD~i 188 (286)
T 3m70_A 116 AKIISPCKVLDLGCGQGRNSLYLSLLGY--DVTSWDHNENSIAFLNETKEKEN---L-NISTALYDINAANI-QENYDFI 188 (286)
T ss_dssp HHHSCSCEEEEESCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---C-CEEEEECCGGGCCC-CSCEEEE
T ss_pred hhccCCCcEEEECCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHcC---C-ceEEEEeccccccc-cCCccEE
Confidence 4445788999999999999999999865 99999999999999999988754 2 89999999998876 7899999
Q ss_pred EeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 237 HAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 237 ~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
++..+++|++++ ..+++++.++|||||++++.......... . .......++.+++.++++. |+++..
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~--------~~~~~~~~~~~~l~~~~~~--~~~~~~ 257 (286)
T 3m70_A 189 VSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVP-C--------PLPFSFTFAENELKEYYKD--WEFLEY 257 (286)
T ss_dssp EECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC-C--------SSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred EEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCC-C--------CCCccccCCHHHHHHHhcC--CEEEEE
Confidence 999999999765 48999999999999998887765432111 0 1134567889999999966 877664
Q ss_pred EE---------------eCcEEEEEEeCC
Q 020307 315 KV---------------QQSFIMFAAQKP 328 (328)
Q Consensus 315 ~~---------------~~~~~~~~a~k~ 328 (328)
.. ...+..++|+||
T Consensus 258 ~~~~~~~~~~~~~g~~~~~~~~~l~arK~ 286 (286)
T 3m70_A 258 NENMGELHKTDENGNRIKMKFATMLARKK 286 (286)
T ss_dssp ECCEEEEEEECSSCCEEEEEEEEEEEECC
T ss_pred EccCCeeeeccCCCCEEEEEEEEEEEecC
Confidence 21 113577889987
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-18 Score=157.90 Aligned_cols=164 Identities=14% Similarity=0.176 Sum_probs=128.5
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
...+..+|||||||+|.++..++++.|..+++..|. +.+++.|++++...+ ..++.++.+|+...|.+ .+|+|+
T Consensus 176 ~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~---~~rv~~~~gD~~~~~~~--~~D~~~ 249 (353)
T 4a6d_A 176 DLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE---EEQIDFQEGDFFKDPLP--EADLYI 249 (353)
T ss_dssp CGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-----CCSEEEEESCTTTSCCC--CCSEEE
T ss_pred CcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc---cCceeeecCccccCCCC--CceEEE
Confidence 344567999999999999999999999999999997 889999998876543 67899999999876644 579999
Q ss_pred eccccccCCChH--HHHHHHHhcccCCcEEEEEEeccCCC-CcchhhHHHHH--hhhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 238 AGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTS-STSLTGRVLRE--RILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 238 ~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
+.++||+++|+. ++|+++++.|+|||+++|.+...+.. ..++....+.- .....-...|.++|+++++++||+.+
T Consensus 250 ~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v 329 (353)
T 4a6d_A 250 LARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDF 329 (353)
T ss_dssp EESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEE
T ss_pred eeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceE
Confidence 999999999884 78999999999999999999765432 23332221111 11122345799999999999999999
Q ss_pred EEEEe-CcEEEEEEeC
Q 020307 313 TSKVQ-QSFIMFAAQK 327 (328)
Q Consensus 313 ~~~~~-~~~~~~~a~k 327 (328)
+++.. ..+.+++|+|
T Consensus 330 ~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 330 QFKKTGAIYDAILARK 345 (353)
T ss_dssp EEECCSSSCEEEEEEC
T ss_pred EEEEcCCceEEEEEEe
Confidence 86554 4468889998
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=161.84 Aligned_cols=155 Identities=17% Similarity=0.170 Sum_probs=121.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||||||+|.++..+++.++..+++++|+ +.+++.+++ .+++.++.+|+.+ +++. ||+|++.
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~~--~D~v~~~ 274 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP---------LSGIEHVGGDMFA-SVPQ--GDAMILK 274 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCC--EEEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh---------cCCCEEEeCCccc-CCCC--CCEEEEe
Confidence 4568999999999999999999998889999999 888877664 4579999999977 6554 9999999
Q ss_pred cccccCCChH--HHHHHHHhcccCCcEEEEEEeccCCCCc-chh--hHHHHHh---hhccCCCCCHHHHHHHHHHCCCeE
Q 020307 240 AALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSST-SLT--GRVLRER---ILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 240 ~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~--~~~~~~~---~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
+++||++++. .+|+++.++|||||++++.++..+.... +.. ....... ...+...++.++|+++++++||++
T Consensus 275 ~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 354 (372)
T 1fp1_D 275 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSK 354 (372)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSE
T ss_pred cccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCce
Confidence 9999999998 9999999999999999999876543221 110 0111111 012345679999999999999999
Q ss_pred EEEEE-eCc-EEEEEEeC
Q 020307 312 YTSKV-QQS-FIMFAAQK 327 (328)
Q Consensus 312 v~~~~-~~~-~~~~~a~k 327 (328)
++... ... +.++.++|
T Consensus 355 ~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 355 FQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp EEEEEEETTTEEEEEEEC
T ss_pred EEEEEcCCCCeEEEEEeC
Confidence 88765 444 77777765
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-18 Score=150.62 Aligned_cols=161 Identities=20% Similarity=0.298 Sum_probs=119.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++....+ .++.++++|+.+++++ ++||+|++.
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~-~~fD~v~~~ 112 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKERN----LKIEFLQGDVLEIAFK-NEFDAVTMF 112 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCCEEEESCGGGCCCC-SCEEEEEEC
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhcC----CceEEEECChhhcccC-CCccEEEEc
Confidence 4578999999999999999999865 99999999999999999887653 3799999999888764 689999987
Q ss_pred c-ccccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCC--Cc----------------ch--hhH------------HH
Q 020307 240 A-ALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTS--ST----------------SL--TGR------------VL 284 (328)
Q Consensus 240 ~-vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~--~~----------------~~--~~~------------~~ 284 (328)
. +++|++ ++..+++++.++|||||++++..++.... .. .+ ... ..
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (252)
T 1wzn_A 113 FSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRLVQIL 192 (252)
T ss_dssp SSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC-------CCEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred CCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccchhcccCCCCeeeeccCCCeeEEEEeecccccccceeeheeeeeec
Confidence 4 455554 45689999999999999999877652100 00 00 000 00
Q ss_pred HHh-------hhccCCCCCHHHHHHHHHHCCCeEEEEEEe--------CcEEEEEEeCC
Q 020307 285 RER-------ILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ--------QSFIMFAAQKP 328 (328)
Q Consensus 285 ~~~-------~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~--------~~~~~~~a~k~ 328 (328)
... ...+.++++.++++ +++++||++++.... ..-++++|+|+
T Consensus 193 ~~~g~~~~~~~~~~~~~~~~~e~~-~l~~aGF~~~~~~~~~~~~~~~~~~r~~~va~k~ 250 (252)
T 1wzn_A 193 RPNGEVKAFLVDDELNIYTPREVR-LLAEKYFEKVKIYGNLKRELSPNDMRYWIVGIAK 250 (252)
T ss_dssp CTTSCEEEEEEEEEEECCCHHHHH-HHHTTTSSEEEEEETTBSSCCTTCCEEEEEEECC
T ss_pred ccCCceeEEEEeeeeeeecHHHHH-HHHHhcCceeeeecccccccCCCCceEEEEEEee
Confidence 000 01345789999997 899999999886442 23478888875
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=155.42 Aligned_cols=147 Identities=16% Similarity=0.201 Sum_probs=114.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEEecCCCCCCCC------C
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRLPFAS------G 231 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~~~lp~~~------~ 231 (328)
.++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|++++... +. ..++.++++|+.++++.+ +
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~~ 112 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT--YKNVSFKISSSDDFKFLGADSVDKQ 112 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C--CTTEEEEECCTTCCGGGCTTTTTSS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC--CCceEEEEcCHHhCCccccccccCC
Confidence 468899999999999999999764 6779999999999999999998774 22 568999999999988877 8
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCC-CCcchhhHHHHHhhh---ccCCC---CCHHHHHHHH
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT-SSTSLTGRVLRERIL---QNYNY---LTEEEIEDLC 304 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~-~~~~~~~~~~~~~~~---~~~~~---~~~~~l~~ll 304 (328)
+||+|++..+++|+ ++..+++++.++|||||++++.++.... ...+.....+..... ....+ ...+.+.+++
T Consensus 113 ~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~~~~l 191 (299)
T 3g5t_A 113 KIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPYWEQPGRSRLRNML 191 (299)
T ss_dssp CEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGGTTHHHHHHHCTTTTGGGSCTTHHHHHHTTT
T ss_pred CeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCCccccCcHHHHHHHHHhccCcccccchhhchhhHHHHHhh
Confidence 99999999999999 9999999999999999999995544321 111121222222111 11122 3466789999
Q ss_pred HHCCC
Q 020307 305 TSCGL 309 (328)
Q Consensus 305 ~~~Gf 309 (328)
++.||
T Consensus 192 ~~~gf 196 (299)
T 3g5t_A 192 KDSHL 196 (299)
T ss_dssp TTCCC
T ss_pred hccCC
Confidence 99999
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-19 Score=154.60 Aligned_cols=149 Identities=17% Similarity=0.256 Sum_probs=115.5
Q ss_pred cCCCeEEEEcCCcCHH-HHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 160 AQGGLLVDVSCGSGLF-SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~-~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
.++.+|||+|||+|.+ ...++..+ .+++|+|+|+.+++.+++++... ..++.++.+|+.++++++++||+|++
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~ 95 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAENFSREN----NFKLNISKGDIRKLPFKDESMSFVYS 95 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTT--CEEEEEECCHHHHHHHHHHHHHH----TCCCCEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhc----CCceEEEECchhhCCCCCCceeEEEE
Confidence 4578999999999997 45555544 49999999999999999987764 34788999999999988899999999
Q ss_pred ccccccC--CChHHHHHHHHhcccCCcEEEEEEeccCCCCcch---hhHH----HHHhhhccCCCCCHHHHHHHHHHCCC
Q 020307 239 GAALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL---TGRV----LRERILQNYNYLTEEEIEDLCTSCGL 309 (328)
Q Consensus 239 ~~vl~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~l~~ll~~~Gf 309 (328)
..+++|+ .++..+++++.++|||||++++.++......... .... .....+....+|+.+++.++++.+||
T Consensus 96 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~ 175 (209)
T 2p8j_A 96 YGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKV 175 (209)
T ss_dssp CSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEE
T ss_pred cChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCc
Confidence 9999999 5778999999999999999999998754211100 0000 00011122368899999999999999
Q ss_pred eEEEE
Q 020307 310 TNYTS 314 (328)
Q Consensus 310 ~~v~~ 314 (328)
...+.
T Consensus 176 ~~~~~ 180 (209)
T 2p8j_A 176 LFKED 180 (209)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 76653
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-19 Score=161.41 Aligned_cols=152 Identities=18% Similarity=0.184 Sum_probs=111.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcC-----------------------------
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI----------------------------- 211 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~----------------------------- 211 (328)
++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.|++++...+..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 678999999999999999999976679999999999999999876543210
Q ss_pred --------------------------CCCCeEEEEecCCCCC-----CCCCccceEEeccccccCC------ChHHHHHH
Q 020307 212 --------------------------LTSNLALVRADVCRLP-----FASGFVDAVHAGAALHCWP------SPSNAVAE 254 (328)
Q Consensus 212 --------------------------~~~~i~~~~~d~~~lp-----~~~~~fD~i~~~~vl~h~~------d~~~~l~~ 254 (328)
...++.|+++|+...+ +.+++||+|++..+++|+. ++..++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 0148999999997644 5678999999999998875 67789999
Q ss_pred HHhcccCCcEEEEEEeccCCC-CcchhhHHHHHhhhccCCCCCHHHHHHHHHH--CCCeEEEE
Q 020307 255 ISRILRSGGVFVGTTFLRYTS-STSLTGRVLRERILQNYNYLTEEEIEDLCTS--CGLTNYTS 314 (328)
Q Consensus 255 ~~r~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--~Gf~~v~~ 314 (328)
+.++|||||+|++........ ........+.... +...+.++++.++|.+ +||+.++.
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~--~~~~~~p~~~~~~L~~~~~GF~~~~~ 266 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNY--YRIQLKPEQFSSYLTSPDVGFSSYEL 266 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHH--HHCCCCGGGHHHHHTSTTTCCCEEEE
T ss_pred HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhh--hcEEEcHHHHHHHHHhcCCCceEEEE
Confidence 999999999999975432100 0000111111111 1224558999999999 99987764
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=147.71 Aligned_cols=139 Identities=14% Similarity=0.125 Sum_probs=113.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++ +|||+|||+|.++..+++.+. +++|+|+|+.+++.++++....+ .++.++.+|+..+++++++||+|++.
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~ 101 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGY--EVTAVDQSSVGLAKAKQLAQEKG----VKITTVQSNLADFDIVADAWEGIVSI 101 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHT----CCEEEECCBTTTBSCCTTTCSEEEEE
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhcC----CceEEEEcChhhcCCCcCCccEEEEE
Confidence 345 999999999999999999865 99999999999999999887653 37999999999988888899999995
Q ss_pred cccccC--CChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 240 AALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 240 ~vl~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
. .|+ .++..+++++.++|||||++++.++........ ......+..+++.+++.++++ ||++++..
T Consensus 102 ~--~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~ 169 (202)
T 2kw5_A 102 F--CHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYN------TGGPKDLDLLPKLETLQSELP--SLNWLIAN 169 (202)
T ss_dssp C--CCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGT------SCCSSSGGGCCCHHHHHHHCS--SSCEEEEE
T ss_pred h--hcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCC------CCCCCcceeecCHHHHHHHhc--CceEEEEE
Confidence 4 455 356789999999999999999999876432100 011124467899999999999 99988753
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.2e-18 Score=157.03 Aligned_cols=156 Identities=15% Similarity=0.202 Sum_probs=120.9
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++ ..++.++.+|+.+ |++++ |+|++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~p~~--D~v~~ 267 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA---------FSGVEHLGGDMFD-GVPKG--DAIFI 267 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCCC--SEEEE
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh---------cCCCEEEecCCCC-CCCCC--CEEEE
Confidence 34568999999999999999999998889999999 888877654 5689999999976 66654 99999
Q ss_pred ccccccCCChH--HHHHHHHhcccCCcEEEEEEeccCCCCc-chhhH--HHHH----hhhccCCCCCHHHHHHHHHHCCC
Q 020307 239 GAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSST-SLTGR--VLRE----RILQNYNYLTEEEIEDLCTSCGL 309 (328)
Q Consensus 239 ~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~--~~~~----~~~~~~~~~~~~~l~~ll~~~Gf 309 (328)
.+++||++++. .+|++++++|||||++++.+...+.... +.... .... ........++.++|+++++++||
T Consensus 268 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF 347 (368)
T 3reo_A 268 KWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGF 347 (368)
T ss_dssp ESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTC
T ss_pred echhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCC
Confidence 99999998775 7899999999999999999976543221 11010 0111 11124567899999999999999
Q ss_pred eEEEEEE-eCcEEEEEEeC
Q 020307 310 TNYTSKV-QQSFIMFAAQK 327 (328)
Q Consensus 310 ~~v~~~~-~~~~~~~~a~k 327 (328)
+.++... ...+.++.+.|
T Consensus 348 ~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 348 RGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp CEEEEEEEETTEEEEEEEC
T ss_pred eeeEEEEeCCCcEEEEEEe
Confidence 9988654 45566666665
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-19 Score=158.71 Aligned_cols=147 Identities=19% Similarity=0.217 Sum_probs=106.7
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcC-------------CC--------------
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-------------LT-------------- 213 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-------------~~-------------- 213 (328)
++.+|||||||+|.+...++.. ...+|+|+|+|+.+++.|++++...... ..
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 6789999999999955444433 2349999999999999998865421000 00
Q ss_pred CCeEEEEecCCC-CCC-----CCCccceEEecccccc----CCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHH
Q 020307 214 SNLALVRADVCR-LPF-----ASGFVDAVHAGAALHC----WPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV 283 (328)
Q Consensus 214 ~~i~~~~~d~~~-lp~-----~~~~fD~i~~~~vl~h----~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~ 283 (328)
..+.++.+|+.. +|+ ++++||+|+++.+++| ++++..+|+++.++|||||+|++.......... .
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~-~---- 224 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYL-A---- 224 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEE-E----
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEE-c----
Confidence 015677789877 664 3467999999999999 667889999999999999999998644321100 0
Q ss_pred HHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 284 LRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
.....+..+++.+++.++|+++||++++..
T Consensus 225 --~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 254 (289)
T 2g72_A 225 --GEARLTVVPVSEEEVREALVRSGYKVRDLR 254 (289)
T ss_dssp --TTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred --CCeeeeeccCCHHHHHHHHHHcCCeEEEee
Confidence 011123567899999999999999988754
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.5e-18 Score=155.70 Aligned_cols=156 Identities=18% Similarity=0.164 Sum_probs=121.2
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++ ..++.++.+|+.+ |++++ |+|++
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~-~~p~~--D~v~~ 265 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ---------FPGVTHVGGDMFK-EVPSG--DTILM 265 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCCC--SEEEE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh---------cCCeEEEeCCcCC-CCCCC--CEEEe
Confidence 34568999999999999999999998889999999 888876654 5689999999987 76654 99999
Q ss_pred ccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCc-chhhH--HHHH---h-hhccCCCCCHHHHHHHHHHCCC
Q 020307 239 GAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGR--VLRE---R-ILQNYNYLTEEEIEDLCTSCGL 309 (328)
Q Consensus 239 ~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~--~~~~---~-~~~~~~~~~~~~l~~ll~~~Gf 309 (328)
.+++||++++ ..+|++++++|||||++++.+...+.... ..... .... . .......++.++|+++++++||
T Consensus 266 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF 345 (364)
T 3p9c_A 266 KWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGF 345 (364)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTC
T ss_pred hHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCC
Confidence 9999999876 48899999999999999999877543211 11110 1111 1 1234457899999999999999
Q ss_pred eEEEEEE-eCcEEEEEEeC
Q 020307 310 TNYTSKV-QQSFIMFAAQK 327 (328)
Q Consensus 310 ~~v~~~~-~~~~~~~~a~k 327 (328)
+.++... ...+.++.+.|
T Consensus 346 ~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 346 TGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp CEEEEEEEETTEEEEEEEC
T ss_pred ceEEEEEcCCceEEEEEeC
Confidence 9988654 45566777665
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-18 Score=148.95 Aligned_cols=143 Identities=15% Similarity=0.078 Sum_probs=113.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCC-----Cccc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS-----GFVD 234 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~-----~~fD 234 (328)
.++.+|||+|||+|.++..+++.++ +|+|+|+|+.+++.++++.. ..++.++++|+.+++... ..||
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~~d 126 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT------AANISYRLLDGLVPEQAAQIHSEIGDA 126 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC------CTTEEEEECCTTCHHHHHHHHHHHCSC
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc------ccCceEEECcccccccccccccccCcc
Confidence 5678999999999999999999987 99999999999999998762 458999999998865432 2499
Q ss_pred eEEeccccccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHH----------H--hhhccCCCCCHHHH
Q 020307 235 AVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR----------E--RILQNYNYLTEEEI 300 (328)
Q Consensus 235 ~i~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~----------~--~~~~~~~~~~~~~l 300 (328)
+|++..+++|++ ++..+++++.++|||||++++.++.... ..++..... . ........++.+++
T Consensus 127 ~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (245)
T 3ggd_A 127 NIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGC--IDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDI 204 (245)
T ss_dssp EEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTH--HHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHH
T ss_pred EEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccc--cHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHH
Confidence 999999999998 7889999999999999999999886541 111111000 0 01122346899999
Q ss_pred HHHHHHCCCeEEEE
Q 020307 301 EDLCTSCGLTNYTS 314 (328)
Q Consensus 301 ~~ll~~~Gf~~v~~ 314 (328)
.+++ +||+++..
T Consensus 205 ~~~~--aGf~~~~~ 216 (245)
T 3ggd_A 205 ELYF--PDFEILSQ 216 (245)
T ss_dssp HHHC--TTEEEEEE
T ss_pred HHHh--CCCEEEec
Confidence 9999 99998874
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-17 Score=138.66 Aligned_cols=126 Identities=19% Similarity=0.113 Sum_probs=107.2
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.++..+++|+|+|+.+++.|++++...+ ..++.++.+|+.+.....++||+|
T Consensus 36 l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~D~i 112 (204)
T 3e05_A 36 LRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV---ARNVTLVEAFAPEGLDDLPDPDRV 112 (204)
T ss_dssp TTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHT---CTTEEEEECCTTTTCTTSCCCSEE
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEeCChhhhhhcCCCCCEE
Confidence 45567889999999999999999999877899999999999999999988765 468999999996554344789999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCe
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
++..+++ ++..+++++.++|||||++++.++... +.+++.++++++||.
T Consensus 113 ~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------------~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 113 FIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTLD----------------------TLTKAVEFLEDHGYM 161 (204)
T ss_dssp EESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBHH----------------------HHHHHHHHHHHTTCE
T ss_pred EECCCCc---CHHHHHHHHHHhcCCCeEEEEEecccc----------------------cHHHHHHHHHHCCCc
Confidence 9988775 788999999999999999999875321 346788999999983
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.6e-18 Score=149.59 Aligned_cols=145 Identities=19% Similarity=0.120 Sum_probs=113.4
Q ss_pred CCCeEEEEcCCc---CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----------
Q 020307 161 QGGLLVDVSCGS---GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 227 (328)
Q Consensus 161 ~~~~vLDiGcG~---G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------- 227 (328)
...+|||||||+ |.++..+.+..+..+|+++|+|+.|++.|++++.. ..++.++.+|+.+.+
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-----~~~v~~~~~D~~~~~~~~~~~~~~~ 151 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-----DPNTAVFTADVRDPEYILNHPDVRR 151 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-----CTTEEEEECCTTCHHHHHHSHHHHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-----CCCeEEEEeeCCCchhhhccchhhc
Confidence 457999999999 99888888877778999999999999999998754 468999999997531
Q ss_pred -CCCCccceEEeccccccCCC--hHHHHHHHHhcccCCcEEEEEEeccCCCC-cchhhHHHHHhhhccCCCCCHHHHHHH
Q 020307 228 -FASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSS-TSLTGRVLRERILQNYNYLTEEEIEDL 303 (328)
Q Consensus 228 -~~~~~fD~i~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l 303 (328)
++..+||+|++..+|||+++ +..+|+++.++|||||+|++.+....... .......+.. ......+++.+++.++
T Consensus 152 ~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~ei~~~ 230 (274)
T 2qe6_A 152 MIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLARITRE-NLGEGWARTPEEIERQ 230 (274)
T ss_dssp HCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHHHHHH-HHSCCCCBCHHHHHHT
T ss_pred cCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHHHHHh-cCCCCccCCHHHHHHH
Confidence 22358999999999999987 78999999999999999999998753200 0001111221 1234567899999999
Q ss_pred HHHCCCeEEE
Q 020307 304 CTSCGLTNYT 313 (328)
Q Consensus 304 l~~~Gf~~v~ 313 (328)
| .||++++
T Consensus 231 l--~G~~l~~ 238 (274)
T 2qe6_A 231 F--GDFELVE 238 (274)
T ss_dssp T--TTCEECT
T ss_pred h--CCCeEcc
Confidence 9 5998765
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.2e-18 Score=143.48 Aligned_cols=138 Identities=16% Similarity=0.155 Sum_probs=116.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+ ..+++|+|+|+.+++.|++++...+ ..++.++.+|+.+.+ +++||+|++.
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~--~~~fD~i~~~ 132 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKLG-AKSVLATDISDESMTAAEENAALNG---IYDIALQKTSLLADV--DGKFDLIVAN 132 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTT---CCCCEEEESSTTTTC--CSCEEEEEEE
T ss_pred cCCCEEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcC---CCceEEEeccccccC--CCCceEEEEC
Confidence 467899999999999999998864 4689999999999999999988765 335999999997653 5799999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeCc
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS 319 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~ 319 (328)
.++++ ...+++++.++|||||++++.++... +.+++.++++++||++++....+.
T Consensus 133 ~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~----------------------~~~~~~~~~~~~Gf~~~~~~~~~~ 187 (205)
T 3grz_A 133 ILAEI---LLDLIPQLDSHLNEDGQVIFSGIDYL----------------------QLPKIEQALAENSFQIDLKMRAGR 187 (205)
T ss_dssp SCHHH---HHHHGGGSGGGEEEEEEEEEEEEEGG----------------------GHHHHHHHHHHTTEEEEEEEEETT
T ss_pred CcHHH---HHHHHHHHHHhcCCCCEEEEEecCcc----------------------cHHHHHHHHHHcCCceEEeeccCC
Confidence 88876 47889999999999999999875432 357899999999999999888898
Q ss_pred EEEEEEeCC
Q 020307 320 FIMFAAQKP 328 (328)
Q Consensus 320 ~~~~~a~k~ 328 (328)
|..++.++|
T Consensus 188 w~~~~~~~~ 196 (205)
T 3grz_A 188 WIGLAISRK 196 (205)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEecc
Confidence 877666543
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-17 Score=142.86 Aligned_cols=148 Identities=14% Similarity=0.160 Sum_probs=112.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC----CCCCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~ 232 (328)
+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+++++.. ..++.++.+|+.. +++. ++
T Consensus 70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~v~~~~~d~~~~~~~~~~~-~~ 143 (230)
T 1fbn_A 70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-----RENIIPILGDANKPQEYANIV-EK 143 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-----CTTEEEEECCTTCGGGGTTTS-CC
T ss_pred cCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc-----CCCeEEEECCCCCcccccccC-cc
Confidence 334577899999999999999999985456999999999999999988655 4689999999987 6765 78
Q ss_pred cceEEeccccccCCCh---HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCC
Q 020307 233 VDAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL 309 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf 309 (328)
||+|+ ++++++ ..+++++.++|||||++++..........+... .+..+++. +++++||
T Consensus 144 ~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~------------~~~~~~l~-~l~~~Gf 205 (230)
T 1fbn_A 144 VDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPK------------EIFKEQKE-ILEAGGF 205 (230)
T ss_dssp EEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHH------------HHHHHHHH-HHHHHTE
T ss_pred EEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHH------------HhhHHHHH-HHHHCCC
Confidence 99998 566777 778999999999999999973211111111100 11236787 8999999
Q ss_pred eEEEEEEeCc----EEEEEEeCC
Q 020307 310 TNYTSKVQQS----FIMFAAQKP 328 (328)
Q Consensus 310 ~~v~~~~~~~----~~~~~a~k~ 328 (328)
++++.....+ .++++++|+
T Consensus 206 ~~~~~~~~~~~~~~~~~v~~~k~ 228 (230)
T 1fbn_A 206 KIVDEVDIEPFEKDHVMFVGIWE 228 (230)
T ss_dssp EEEEEEECTTTSTTEEEEEEEEC
T ss_pred EEEEEEccCCCccceEEEEEEeC
Confidence 9888766544 467777653
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=147.80 Aligned_cols=108 Identities=16% Similarity=0.278 Sum_probs=96.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++... ..++.++++|+.+++ ++++||+|
T Consensus 47 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~-~~~~fD~v 118 (216)
T 3ofk_A 47 LSSGAVSNGLEIGCAAGAFTEKLAPHCK--RLTVIDVMPRAIGRACQRTKR-----WSHISWAATDILQFS-TAELFDLI 118 (216)
T ss_dssp TTTSSEEEEEEECCTTSHHHHHHGGGEE--EEEEEESCHHHHHHHHHHTTT-----CSSEEEEECCTTTCC-CSCCEEEE
T ss_pred cccCCCCcEEEEcCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHhccc-----CCCeEEEEcchhhCC-CCCCccEE
Confidence 4445678999999999999999999875 999999999999999998765 458999999999888 67899999
Q ss_pred EeccccccCCCh---HHHHHHHHhcccCCcEEEEEEecc
Q 020307 237 HAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 237 ~~~~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
++..+++|++++ ..+++++.++|||||++++.++..
T Consensus 119 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 119 VVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp EEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred EEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 999999999998 467999999999999999988753
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6e-18 Score=155.68 Aligned_cols=155 Identities=16% Similarity=0.173 Sum_probs=119.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++ ..++.++.+|+.+ +++ .||+|++.
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~p--~~D~v~~~ 253 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG---------SNNLTYVGGDMFT-SIP--NADAVLLK 253 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------BTTEEEEECCTTT-CCC--CCSEEEEE
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc---------CCCcEEEeccccC-CCC--CccEEEee
Confidence 4568999999999999999999988889999999 999887764 3469999999966 554 39999999
Q ss_pred cccccCCChH--HHHHHHHhcccC---CcEEEEEEeccCCCCcc---hhhHHHHHhh--hccCCCCCHHHHHHHHHHCCC
Q 020307 240 AALHCWPSPS--NAVAEISRILRS---GGVFVGTTFLRYTSSTS---LTGRVLRERI--LQNYNYLTEEEIEDLCTSCGL 309 (328)
Q Consensus 240 ~vl~h~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~l~~ll~~~Gf 309 (328)
+++||++++. .+|+++.++||| ||++++.++........ .....+.... ......++.++|+++++++||
T Consensus 254 ~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf 333 (352)
T 1fp2_A 254 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGF 333 (352)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTC
T ss_pred hhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCC
Confidence 9999999988 999999999999 99999998765432211 0011111110 011445789999999999999
Q ss_pred eEEEEEEe-CcEEEEEEeC
Q 020307 310 TNYTSKVQ-QSFIMFAAQK 327 (328)
Q Consensus 310 ~~v~~~~~-~~~~~~~a~k 327 (328)
++++.... +...++.++|
T Consensus 334 ~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 334 QHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp CEEEEEEEETTEEEEEEEC
T ss_pred CeeEEEecCCCcEEEEEeC
Confidence 98886553 4446676654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-18 Score=155.80 Aligned_cols=155 Identities=13% Similarity=0.114 Sum_probs=109.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCC---CCCeEEEEecC------CCC--CCC
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL---TSNLALVRADV------CRL--PFA 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~---~~~i~~~~~d~------~~l--p~~ 229 (328)
++.+|||||||+|..+..++..+ ..+|+|+|+|+.+++.|+++....+... ..++.+.+.|+ .++ +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 57899999999998766666554 3489999999999999999886543100 01367888887 322 245
Q ss_pred CCccceEEeccccccC---CChHHHHHHHHhcccCCcEEEEEEeccCCCCcch------------hhH-----------H
Q 020307 230 SGFVDAVHAGAALHCW---PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL------------TGR-----------V 283 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~---~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~------------~~~-----------~ 283 (328)
+++||+|+|..++||+ .+...+|+++.++|||||++++.+++.......+ ... .
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 206 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR 206 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence 7899999999999876 3557899999999999999999998754110000 000 0
Q ss_pred ---HHHhh---hccCCCCCHHHHHHHHHHCCCeEEEEEE
Q 020307 284 ---LRERI---LQNYNYLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 284 ---~~~~~---~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
+.... .....+.+.+++.++++++||+++....
T Consensus 207 ~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~ 245 (302)
T 2vdw_A 207 IVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVD 245 (302)
T ss_dssp EEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecC
Confidence 00000 0012367789999999999999988644
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-18 Score=146.70 Aligned_cols=148 Identities=20% Similarity=0.214 Sum_probs=107.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH----hcCcCCCCCeEEEEecCCCCCCCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK----QDNTILTSNLALVRADVCRLPFASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~~~~~~~i~~~~~d~~~lp~~~~~ 232 (328)
+...++.+|||+|||+|.++..+++.++..+|+|+|+|+.+++.+.++.. ..+ .+++.++++|+.++|+.+++
T Consensus 23 l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~---~~~v~~~~~d~~~l~~~~~~ 99 (218)
T 3mq2_A 23 LRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGG---LPNLLYLWATAERLPPLSGV 99 (218)
T ss_dssp HHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTC---CTTEEEEECCSTTCCSCCCE
T ss_pred hhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcC---CCceEEEecchhhCCCCCCC
Confidence 44567889999999999999999999877899999999998886443332 222 45899999999999987666
Q ss_pred cceEEe---cccc--ccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCC----HHHHHHH
Q 020307 233 VDAVHA---GAAL--HCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLT----EEEIEDL 303 (328)
Q Consensus 233 fD~i~~---~~vl--~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~l 303 (328)
|.|.. ...+ +|++++..+++++.++|||||++++....... .+... .+ .....++ .+++..+
T Consensus 100 -d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~-~~-----~~~~~~~~~~~~~~l~~~ 170 (218)
T 3mq2_A 100 -GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAW--RPSVP-EV-----GEHPEPTPDSADEWLAPR 170 (218)
T ss_dssp -EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGB--TTBCG-GG-----TTCCCCCHHHHHHHHHHH
T ss_pred -CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccc--ccccc-cc-----ccCCccchHHHHHHHHHH
Confidence 66663 2333 38899999999999999999999996543221 00000 00 1112222 3458889
Q ss_pred HHHCCCeEEEEEE
Q 020307 304 CTSCGLTNYTSKV 316 (328)
Q Consensus 304 l~~~Gf~~v~~~~ 316 (328)
++++||++.+...
T Consensus 171 l~~aGf~i~~~~~ 183 (218)
T 3mq2_A 171 YAEAGWKLADCRY 183 (218)
T ss_dssp HHHTTEEEEEEEE
T ss_pred HHHcCCCceeeec
Confidence 9999999887543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-17 Score=161.58 Aligned_cols=155 Identities=13% Similarity=0.106 Sum_probs=120.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCc---CCCCCeEEEEecCCCCCCCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNT---ILTSNLALVRADVCRLPFASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~---~~~~~i~~~~~d~~~lp~~~~~ 232 (328)
+...++.+|||||||+|.++..+++.+ +..+|+|+|+|+.+++.|++++..... ....++.++++|+.++++.+++
T Consensus 717 L~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~s 796 (950)
T 3htx_A 717 IRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHD 796 (950)
T ss_dssp HHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCS
T ss_pred hcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCC
Confidence 444578899999999999999999987 446999999999999999987653210 0145899999999999998899
Q ss_pred cceEEeccccccCCChH--HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHH-------HH-------HhhhccCCCCC
Q 020307 233 VDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV-------LR-------ERILQNYNYLT 296 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~-------~~-------~~~~~~~~~~~ 296 (328)
||+|++..+++|++++. .+++++.++|||| .+++.+++... ...+... .. -....|...++
T Consensus 797 FDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ey--N~lF~~Lnp~tr~~dPd~~~~~~fRh~DHrFEWT 873 (950)
T 3htx_A 797 VDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEF--NTILQRSTPETQEENNSEPQLPKFRNHDHKFEWT 873 (950)
T ss_dssp CCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGG--HHHHTCC------------CCSSCSCSSCSCCBC
T ss_pred eeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchh--hhhhhhcccccccccccccccccccccCcceeec
Confidence 99999999999999876 5899999999999 99999887631 1110000 00 01235666788
Q ss_pred HHHHHH----HHHHCCCeEEEE
Q 020307 297 EEEIED----LCTSCGLTNYTS 314 (328)
Q Consensus 297 ~~~l~~----ll~~~Gf~~v~~ 314 (328)
.++++. +.++.||.+.-.
T Consensus 874 ReEFr~Wae~LAer~GYsVefv 895 (950)
T 3htx_A 874 REQFNQWASKLGKRHNYSVEFS 895 (950)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHHhcCcEEEEE
Confidence 888887 778889976554
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-18 Score=149.71 Aligned_cols=142 Identities=25% Similarity=0.320 Sum_probs=109.7
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++.. . .++.+|+..+++++++||+|++..
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~--------~-~~~~~d~~~~~~~~~~fD~v~~~~ 122 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGV--------K-NVVEAKAEDLPFPSGAFEAVLALG 122 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTC--------S-CEEECCTTSCCSCTTCEEEEEECS
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCC--eEEEEeCCHHHHHHHHhhcC--------C-CEEECcHHHCCCCCCCEEEEEEcc
Confidence 678999999999999999999865 99999999999999998632 2 288999999998889999999998
Q ss_pred ccccC-CChHHHHHHHHhcccCCcEEEEEEeccCCCCcc------h--hhHHHHHhhhc--------cCCCCCHHHHHHH
Q 020307 241 ALHCW-PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTS------L--TGRVLRERILQ--------NYNYLTEEEIEDL 303 (328)
Q Consensus 241 vl~h~-~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~------~--~~~~~~~~~~~--------~~~~~~~~~l~~l 303 (328)
+++|+ +++..+|+++.++|||||++++.+++....... + ....+...... ...+++.+++.++
T Consensus 123 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 202 (260)
T 2avn_A 123 DVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSL 202 (260)
T ss_dssp SHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGGGSSC
T ss_pred hhhhccccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHHHHHh
Confidence 77776 789999999999999999999999875311100 0 00001110000 1137899999888
Q ss_pred HHHCCCeEEEEEE
Q 020307 304 CTSCGLTNYTSKV 316 (328)
Q Consensus 304 l~~~Gf~~v~~~~ 316 (328)
+||++++...
T Consensus 203 ---aGf~~~~~~~ 212 (260)
T 2avn_A 203 ---EGFETVDIRG 212 (260)
T ss_dssp ---TTEEEEEEEE
T ss_pred ---cCceEEEEEC
Confidence 9999887543
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-17 Score=141.33 Aligned_cols=150 Identities=14% Similarity=0.119 Sum_probs=113.6
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC---CCCCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---LPFASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~---lp~~~~~ 232 (328)
+...||.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.+++++.. ..++..+.+|... .++..++
T Consensus 73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~-----~~ni~~V~~d~~~p~~~~~~~~~ 147 (233)
T 4df3_A 73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD-----RRNIFPILGDARFPEKYRHLVEG 147 (233)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT-----CTTEEEEESCTTCGGGGTTTCCC
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh-----hcCeeEEEEeccCccccccccce
Confidence 56789999999999999999999987 7888999999999999999988765 5689999998854 3456788
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
+|+|++. +.|..++..+++++.+.|||||+++++...... . ...+ ... ..++..+.|+++||+++
T Consensus 148 vDvVf~d--~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~-------d---~~~p-~~~--~~~~ev~~L~~~GF~l~ 212 (233)
T 4df3_A 148 VDGLYAD--VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSI-------D---VTTE-PSE--VYKREIKTLMDGGLEIK 212 (233)
T ss_dssp EEEEEEC--CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHH-------H---HHTC-CCH--HHHHHHHHHHHTTCCEE
T ss_pred EEEEEEe--ccCChhHHHHHHHHHHhccCCCEEEEEEecccC-------C---CCCC-hHH--HHHHHHHHHHHCCCEEE
Confidence 9998863 455567789999999999999999987643210 0 0000 000 01234567899999999
Q ss_pred EEEEeCc----EEEEEEe
Q 020307 313 TSKVQQS----FIMFAAQ 326 (328)
Q Consensus 313 ~~~~~~~----~~~~~a~ 326 (328)
+.....+ .+++.++
T Consensus 213 e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 213 DVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp EEEECTTTSTTEEEEEEC
T ss_pred EEEccCCCCCceEEEEEE
Confidence 8776555 3666654
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=152.35 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=119.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.+..+|||||||+|.++..+++.++..+++++|+ +.+++.+++ ..++.++.+|+.. +++ .||+|++.
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~--~~D~v~~~ 258 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG---------NENLNFVGGDMFK-SIP--SADAVLLK 258 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC---------CSSEEEEECCTTT-CCC--CCSEEEEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc---------CCCcEEEeCccCC-CCC--CceEEEEc
Confidence 3567999999999999999999988889999999 788876653 3569999999977 655 49999999
Q ss_pred cccccCCChH--HHHHHHHhcccC---CcEEEEEEeccCCCCcc----hhhHHHHH---hhhccCCCCCHHHHHHHHHHC
Q 020307 240 AALHCWPSPS--NAVAEISRILRS---GGVFVGTTFLRYTSSTS----LTGRVLRE---RILQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 240 ~vl~h~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~l~~ll~~~ 307 (328)
+++||++|+. .+|+++.++||| ||++++.++........ . ...+.. ........++.++|+++++++
T Consensus 259 ~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~-~~~~~d~~~~~~~~g~~~t~~e~~~ll~~a 337 (358)
T 1zg3_A 259 WVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTE-LQLDYDLVMLTMFLGKERTKQEWEKLIYDA 337 (358)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHH-HHHHHHHHHHHHHSCCCEEHHHHHHHHHHT
T ss_pred ccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhh-HHHhhCHHHhccCCCCCCCHHHHHHHHHHc
Confidence 9999999987 999999999999 99999988765432211 1 111111 111234567999999999999
Q ss_pred CCeEEEEEEeCc-EEEEEEeC
Q 020307 308 GLTNYTSKVQQS-FIMFAAQK 327 (328)
Q Consensus 308 Gf~~v~~~~~~~-~~~~~a~k 327 (328)
||++++...... ..++.++|
T Consensus 338 Gf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 338 GFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp TCCEEEEEEETTTEEEEEEEC
T ss_pred CCCeeEEEecCCCcEEEEEeC
Confidence 999988765444 46666654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-16 Score=134.91 Aligned_cols=127 Identities=17% Similarity=0.177 Sum_probs=104.1
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++++..++ ..++.++.+|+.+.......||+|
T Consensus 51 l~~~~~~~vLDlGcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~~~~~~~~~D~v 126 (204)
T 3njr_A 51 LAPRRGELLWDIGGGSGSVSVEWCLAG--GRAITIEPRADRIENIQKNIDTYGL--SPRMRAVQGTAPAALADLPLPEAV 126 (204)
T ss_dssp HCCCTTCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCTTGGGTTSCCCSEE
T ss_pred cCCCCCCEEEEecCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCC--CCCEEEEeCchhhhcccCCCCCEE
Confidence 455678899999999999999999984 4999999999999999999887763 338999999998733234579999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
++..++ ++. +++++.++|||||++++...... +..++.+++++.|+++...
T Consensus 127 ~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~~----------------------~~~~~~~~l~~~g~~i~~i 177 (204)
T 3njr_A 127 FIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTLE----------------------SETLLTQLHARHGGQLLRI 177 (204)
T ss_dssp EECSCC----CHH-HHHHHHHHSCTTCEEEEEECSHH----------------------HHHHHHHHHHHHCSEEEEE
T ss_pred EECCcc----cHH-HHHHHHHhcCCCcEEEEEecCcc----------------------cHHHHHHHHHhCCCcEEEE
Confidence 987754 566 99999999999999999875421 2457788899999987764
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.8e-17 Score=133.97 Aligned_cols=129 Identities=18% Similarity=0.178 Sum_probs=104.0
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.+++++...+. ..++ ++.+|... ++...++||+
T Consensus 21 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~-~~~~d~~~~~~~~~~~~D~ 97 (178)
T 3hm2_A 21 LAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV--SDRI-AVQQGAPRAFDDVPDNPDV 97 (178)
T ss_dssp HCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTC--TTSE-EEECCTTGGGGGCCSCCSE
T ss_pred hcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCC--CCCE-EEecchHhhhhccCCCCCE
Confidence 445677899999999999999999987677999999999999999999887663 3378 88888743 3433378999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
|++..+++| ..+++++.++|||||++++.+.... +...+.+++++.|++....
T Consensus 98 i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 150 (178)
T 3hm2_A 98 IFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTVE----------------------SEQMLWALRKQFGGTISSF 150 (178)
T ss_dssp EEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSHH----------------------HHHHHHHHHHHHCCEEEEE
T ss_pred EEECCcccH----HHHHHHHHHhcCCCCEEEEEeeccc----------------------cHHHHHHHHHHcCCeeEEE
Confidence 999999887 6789999999999999999875421 2346778888899876653
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-19 Score=153.16 Aligned_cols=141 Identities=13% Similarity=0.240 Sum_probs=103.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC--CCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~i~ 237 (328)
.++.+|||||||+|..+..+++..+ .+++|+|+|+.+++.|+++.... ..++.++.+|+..+ ++++++||.|+
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~FD~i~ 133 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTLPDGHFDGIL 133 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred cCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhC----CCceEEEeehHHhhcccccccCCceEE
Confidence 5688999999999999999988764 48999999999999999988765 45788888887543 46788999987
Q ss_pred e-----ccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 238 A-----GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 238 ~-----~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
+ ..+++|++++..+++++.|+|||||+|++.+.... ....... .........+.+...|.++||+++
T Consensus 134 ~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~L~eaGF~~~ 205 (236)
T 3orh_A 134 YDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSW-------GELMKSK-YSDITIMFEETQVPALLEAGFRRE 205 (236)
T ss_dssp ECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHH-------HHHTTTT-CSCHHHHHHHHTHHHHHHHTCCGG
T ss_pred EeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCc-------hhhhhhh-hhhhhhhhHHHHHHHHHHcCCeEE
Confidence 4 56678889999999999999999999987542211 0000000 000011123456677889999754
Q ss_pred E
Q 020307 313 T 313 (328)
Q Consensus 313 ~ 313 (328)
.
T Consensus 206 ~ 206 (236)
T 3orh_A 206 N 206 (236)
T ss_dssp G
T ss_pred E
Confidence 3
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-17 Score=142.24 Aligned_cols=129 Identities=15% Similarity=0.025 Sum_probs=105.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC---CCccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~i 236 (328)
.++.+|||+|||+|.++..++...+..+|+|+|+|+.+++.+++++...+ ..++.++++|+.++++. +++||+|
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~fD~V 145 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ---LENTTFCHDRAETFGQRKDVRESYDIV 145 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT---CSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCEEEEeccHHHhcccccccCCccEE
Confidence 46789999999999999999977667799999999999999999988766 44799999999877653 5789999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
++.. +.++..+++++.++|||||++++...... .. ..+++.+.++.+||++++..
T Consensus 146 ~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~g~~~-------~~-------------~~~~~~~~l~~~g~~~~~~~ 200 (240)
T 1xdz_A 146 TARA----VARLSVLSELCLPLVKKNGLFVALKAASA-------EE-------------ELNAGKKAITTLGGELENIH 200 (240)
T ss_dssp EEEC----CSCHHHHHHHHGGGEEEEEEEEEEECC-C-------HH-------------HHHHHHHHHHHTTEEEEEEE
T ss_pred EEec----cCCHHHHHHHHHHhcCCCCEEEEEeCCCc-------hH-------------HHHHHHHHHHHcCCeEeEEE
Confidence 9976 46789999999999999999988642110 11 12467788999999887753
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=136.85 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=97.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC---CCCcc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFV 233 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~f 233 (328)
+...++.+|||+|||. +++|+|+.|++.|+++.. .++.+.++|+.++++ ++++|
T Consensus 8 ~g~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~-------~~~~~~~~d~~~~~~~~~~~~~f 64 (176)
T 2ld4_A 8 FGISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTG-------NEGRVSVENIKQLLQSAHKESSF 64 (176)
T ss_dssp TTCCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTT-------TTSEEEEEEGGGGGGGCCCSSCE
T ss_pred cCCCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcc-------cCcEEEEechhcCccccCCCCCE
Confidence 4566889999999985 239999999999998753 258999999999887 78899
Q ss_pred ceEEeccccccC-CChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCC
Q 020307 234 DAVHAGAALHCW-PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL 309 (328)
Q Consensus 234 D~i~~~~vl~h~-~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf 309 (328)
|+|++..+++|+ +++..++++++|+|||||++++..+...... ......+.+++.++++++||
T Consensus 65 D~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 65 DIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVD-------------NNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp EEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSC-------------SSSSSCCHHHHHHHHHHTTC
T ss_pred eEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccc-------------cccccCCHHHHHHHHHHCCC
Confidence 999999999999 9999999999999999999999766432110 12334678999999999999
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-16 Score=136.68 Aligned_cols=143 Identities=13% Similarity=0.059 Sum_probs=103.0
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC----CCCCCccc
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVD 234 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD 234 (328)
..++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+.+..+. ..++.++.+|+... ++. ++||
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~-----~~~v~~~~~d~~~~~~~~~~~-~~fD 128 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-----RNNIIPLLFDASKPWKYSGIV-EKVD 128 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-----CSSEEEECSCTTCGGGTTTTC-CCEE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc-----CCCeEEEEcCCCCchhhcccc-ccee
Confidence 4578899999999999999999886456999999999988776665554 45788889998763 444 7899
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHH----HHHHHCCCe
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIE----DLCTSCGLT 310 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~ll~~~Gf~ 310 (328)
+|++.. .++ .+...+++++.++|||||++++...... .....+.+++. +.++++ |+
T Consensus 129 ~V~~~~-~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~-f~ 188 (210)
T 1nt2_A 129 LIYQDI-AQK-NQIEILKANAEFFLKEKGEVVIMVKARS-----------------IDSTAEPEEVFKSVLKEMEGD-FK 188 (210)
T ss_dssp EEEECC-CST-THHHHHHHHHHHHEEEEEEEEEEEEHHH-----------------HCTTSCHHHHHHHHHHHHHTT-SE
T ss_pred EEEEec-cCh-hHHHHHHHHHHHHhCCCCEEEEEEecCC-----------------ccccCCHHHHHHHHHHHHHhh-cE
Confidence 999872 222 2233558999999999999999864311 00112344432 237888 99
Q ss_pred EEEEEEeCc----EEEEEEeC
Q 020307 311 NYTSKVQQS----FIMFAAQK 327 (328)
Q Consensus 311 ~v~~~~~~~----~~~~~a~k 327 (328)
+++.....+ .++++++|
T Consensus 189 ~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 189 IVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp EEEEEECTTTCTTEEEEEEEE
T ss_pred EeeeecCCCCCCCcEEEEEEc
Confidence 999766544 36777765
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-16 Score=136.56 Aligned_cols=107 Identities=21% Similarity=0.244 Sum_probs=91.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCccceEEe
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHA 238 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~i~~ 238 (328)
++.+|||||||+|.++..+++..+..+++|+|+|+.+++.|++++...+ ..++.++.+|+..++ +++++||+|++
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~D~i~~ 117 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG---VPNIKLLWVDGSDLTDYFEDGEIDRLYL 117 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC---CSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcC---CCCEEEEeCCHHHHHhhcCCCCCCEEEE
Confidence 5679999999999999999999887899999999999999999988765 468999999998877 77889999999
Q ss_pred ccccccCC--------ChHHHHHHHHhcccCCcEEEEEEe
Q 020307 239 GAALHCWP--------SPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 239 ~~vl~h~~--------d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+....+.. ....+++++.++|||||++++.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred ECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 86543322 125789999999999999999774
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.5e-17 Score=142.49 Aligned_cols=136 Identities=15% Similarity=0.220 Sum_probs=115.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.++ +|+|+|+|+.+++.+++++...+. . +.+..+|+... +++++||+|+++
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~---~-v~~~~~d~~~~-~~~~~fD~Vv~n 191 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGV---R-PRFLEGSLEAA-LPFGPFDLLVAN 191 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTC---C-CEEEESCHHHH-GGGCCEEEEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCC---c-EEEEECChhhc-CcCCCCCEEEEC
Confidence 4678999999999999999999886 999999999999999999887652 2 88999988652 446789999997
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeCc
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS 319 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~ 319 (328)
...++ ...+++++.++|||||+++++..... +.+++.++++++||++++....+.
T Consensus 192 ~~~~~---~~~~l~~~~~~LkpgG~lils~~~~~----------------------~~~~v~~~l~~~Gf~~~~~~~~~~ 246 (254)
T 2nxc_A 192 LYAEL---HAALAPRYREALVPGGRALLTGILKD----------------------RAPLVREAMAGAGFRPLEEAAEGE 246 (254)
T ss_dssp CCHHH---HHHHHHHHHHHEEEEEEEEEEEEEGG----------------------GHHHHHHHHHHTTCEEEEEEEETT
T ss_pred CcHHH---HHHHHHHHHHHcCCCCEEEEEeeccC----------------------CHHHHHHHHHHCCCEEEEEeccCC
Confidence 66554 46889999999999999999875431 357899999999999999999999
Q ss_pred EEEEEEeC
Q 020307 320 FIMFAAQK 327 (328)
Q Consensus 320 ~~~~~a~k 327 (328)
|..++++|
T Consensus 247 W~~l~~~k 254 (254)
T 2nxc_A 247 WVLLAYGR 254 (254)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEEC
Confidence 99998886
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.5e-17 Score=134.79 Aligned_cols=143 Identities=12% Similarity=0.179 Sum_probs=112.9
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCC--eEEEEecCCCCCCCCCccc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN--LALVRADVCRLPFASGFVD 234 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~--i~~~~~d~~~lp~~~~~fD 234 (328)
+...++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.+++++...+ ..+ +.++.+|+.+. +++++||
T Consensus 48 ~~~~~~~~vLdiG~G~G~~~~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~---~~~~~~~~~~~d~~~~-~~~~~~D 121 (194)
T 1dus_A 48 VVVDKDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKLNN---LDNYDIRVVHSDLYEN-VKDRKYN 121 (194)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTT---CTTSCEEEEECSTTTT-CTTSCEE
T ss_pred cccCCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHcC---CCccceEEEECchhcc-cccCCce
Confidence 444577899999999999999999884 499999999999999999988765 344 99999999773 4567899
Q ss_pred eEEeccccccC-CChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 235 AVHAGAALHCW-PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 235 ~i~~~~vl~h~-~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
+|++..+++|. .+...+++++.++|||||++++.++... ...++.+.+++....+..
T Consensus 122 ~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------------------~~~~~~~~l~~~~~~~~~ 179 (194)
T 1dus_A 122 KIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ----------------------GAKSLAKYMKDVFGNVET 179 (194)
T ss_dssp EEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTH----------------------HHHHHHHHHHHHHSCCEE
T ss_pred EEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCC----------------------ChHHHHHHHHHHhcceEE
Confidence 99999888763 4567899999999999999999987542 113566677776223333
Q ss_pred EEEeCcEEEEEEeC
Q 020307 314 SKVQQSFIMFAAQK 327 (328)
Q Consensus 314 ~~~~~~~~~~~a~k 327 (328)
......|+++.++|
T Consensus 180 ~~~~~~~~~~~~~k 193 (194)
T 1dus_A 180 VTIKGGYRVLKSKK 193 (194)
T ss_dssp EEEETTEEEEEEEC
T ss_pred EecCCcEEEEEEee
Confidence 45667888888887
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.2e-17 Score=143.83 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=108.0
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEEecCCCCCCCCCccc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRLPFASGFVD 234 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~~~lp~~~~~fD 234 (328)
+...++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.|++++... + ..++.++.+|+.+ ++++++||
T Consensus 106 ~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g---~~~v~~~~~d~~~-~~~~~~fD 181 (275)
T 1yb2_A 106 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD---IGNVRTSRSDIAD-FISDQMYD 181 (275)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC---CTTEEEECSCTTT-CCCSCCEE
T ss_pred cCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC---CCcEEEEECchhc-cCcCCCcc
Confidence 45567889999999999999999987 55679999999999999999998775 4 4689999999977 56678899
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
+|++ |++++..+++++.++|||||++++.++... ..+++.+.+++.||..++.
T Consensus 182 ~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~----------------------~~~~~~~~l~~~Gf~~~~~ 234 (275)
T 1yb2_A 182 AVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFD----------------------QSEKTVLSLSASGMHHLET 234 (275)
T ss_dssp EEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH----------------------HHHHHHHHSGGGTEEEEEE
T ss_pred EEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHH----------------------HHHHHHHHHHHCCCeEEEE
Confidence 9998 678999999999999999999999885421 1346777888899987775
Q ss_pred E
Q 020307 315 K 315 (328)
Q Consensus 315 ~ 315 (328)
.
T Consensus 235 ~ 235 (275)
T 1yb2_A 235 V 235 (275)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-17 Score=139.44 Aligned_cols=125 Identities=17% Similarity=0.281 Sum_probs=104.3
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|||+|||+|.++..++ .+++|+|+|+. ++.++.+|+.++|+++++||+|++
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~------------------~~~~~~~d~~~~~~~~~~fD~v~~ 121 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL------------------DPRVTVCDMAQVPLEDESVDVAVF 121 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS------------------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred cCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC------------------CceEEEeccccCCCCCCCEeEEEE
Confidence 3467899999999999988773 38999999975 345789999999888899999999
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEe-
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ- 317 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~- 317 (328)
..++|| .++..+++++.++|||||++++.++... +.+.+++.++++++||++++....
T Consensus 122 ~~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~~--------------------~~~~~~~~~~l~~~Gf~~~~~~~~~ 180 (215)
T 2zfu_A 122 CLSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSSR--------------------FEDVRTFLRAVTKLGFKIVSKDLTN 180 (215)
T ss_dssp ESCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGGG--------------------CSCHHHHHHHHHHTTEEEEEEECCS
T ss_pred ehhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCCC--------------------CCCHHHHHHHHHHCCCEEEEEecCC
Confidence 999964 8999999999999999999999885421 238899999999999998885443
Q ss_pred CcEEEEEEeC
Q 020307 318 QSFIMFAAQK 327 (328)
Q Consensus 318 ~~~~~~~a~k 327 (328)
..+.+++++|
T Consensus 181 ~~~~~~~~~k 190 (215)
T 2zfu_A 181 SHFFLFDFQK 190 (215)
T ss_dssp TTCEEEEEEE
T ss_pred CeEEEEEEEe
Confidence 4457777776
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-17 Score=140.35 Aligned_cols=117 Identities=14% Similarity=0.221 Sum_probs=100.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC-CCCCCC-CCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFA-SGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~-~~~fD~i~ 237 (328)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++ .+++.++++|+ ..+|++ +++||+|+
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~~~~fD~v~ 116 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA--RWAAYDFSPELLKLARAN--------APHADVYEWNGKGELPAGLGAPFGLIV 116 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHH--------CTTSEEEECCSCSSCCTTCCCCEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHh--------CCCceEEEcchhhccCCcCCCCEEEEE
Confidence 4678999999999999999999865 999999999999999987 45799999999 678887 88999999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
+. .++..+++++.++|||||+++. + ....+.+++.+.++++||+.+...
T Consensus 117 ~~------~~~~~~l~~~~~~LkpgG~l~~--~---------------------~~~~~~~~~~~~l~~~Gf~~~~~~ 165 (226)
T 3m33_A 117 SR------RGPTSVILRLPELAAPDAHFLY--V---------------------GPRLNVPEVPERLAAVGWDIVAED 165 (226)
T ss_dssp EE------SCCSGGGGGHHHHEEEEEEEEE--E---------------------ESSSCCTHHHHHHHHTTCEEEEEE
T ss_pred eC------CCHHHHHHHHHHHcCCCcEEEE--e---------------------CCcCCHHHHHHHHHHCCCeEEEEE
Confidence 87 4788889999999999999991 1 112456689999999999887743
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-17 Score=144.08 Aligned_cols=148 Identities=16% Similarity=0.203 Sum_probs=98.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCC-HHHHHHH---HHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS-ENMLRQC---YDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s-~~~~~~a---~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
.++.+|||||||+|.++..+++..+..+|+|+|+| +.+++.| +++....+ ..++.++++|+..+|. ..+|.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~---~~~v~~~~~d~~~l~~--~~~d~ 97 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGG---LSNVVFVIAAAESLPF--ELKNI 97 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTC---CSSEEEECCBTTBCCG--GGTTC
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEcCHHHhhh--hccCe
Confidence 46789999999999999999987777899999999 7777766 66665554 4689999999998863 23355
Q ss_pred EEeccccccC--------CChHHHHHHHHhcccCCcEEEEEEeccCC-CCcchhhHHHHHhhhc-cCCCCCHHHHHHHHH
Q 020307 236 VHAGAALHCW--------PSPSNAVAEISRILRSGGVFVGTTFLRYT-SSTSLTGRVLRERILQ-NYNYLTEEEIEDLCT 305 (328)
Q Consensus 236 i~~~~vl~h~--------~d~~~~l~~~~r~LkpgG~l~i~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~l~~ll~ 305 (328)
|.+..+...+ .++..+|+++.|+|||||++++....... ...+. ... ..+. ...++..+++.++++
T Consensus 98 v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~el~~~l~ 173 (225)
T 3p2e_A 98 ADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEI---KKR-GLPLLSKAYFLSEQYKAELS 173 (225)
T ss_dssp EEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC------------------CCHHHHHSHHHHHHHH
T ss_pred EEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchh---hhc-CCCCCChhhcchHHHHHHHH
Confidence 5544433222 23457899999999999999994433221 00010 000 0010 001112235999999
Q ss_pred HCCCeEEEEEE
Q 020307 306 SCGLTNYTSKV 316 (328)
Q Consensus 306 ~~Gf~~v~~~~ 316 (328)
++||++.....
T Consensus 174 ~aGf~v~~~~~ 184 (225)
T 3p2e_A 174 NSGFRIDDVKE 184 (225)
T ss_dssp HHTCEEEEEEE
T ss_pred HcCCCeeeeee
Confidence 99999887544
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-16 Score=142.10 Aligned_cols=108 Identities=10% Similarity=0.053 Sum_probs=91.5
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccc
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 234 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD 234 (328)
.++...++.+|||||||+|.++..+..+.++.+|+|+|+|+++++.|+++++..+ ..++.++++|+.++| +++||
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~g---l~~v~~v~gDa~~l~--d~~FD 190 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLG---VDGVNVITGDETVID--GLEFD 190 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHT---CCSEEEEESCGGGGG--GCCCS
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcC---CCCeEEEECchhhCC--CCCcC
Confidence 3456678999999999998776554444346799999999999999999998766 468999999998876 78999
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+|++... .+++.++++++.++|||||++++...
T Consensus 191 vV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 191 VLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp EEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 9998655 57899999999999999999999774
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.5e-18 Score=147.67 Aligned_cols=106 Identities=14% Similarity=0.239 Sum_probs=87.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC--CCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~i~ 237 (328)
.++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.|+++.... ..++.++.+|+.++ ++++++||+|+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~fD~V~ 133 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTLPDGHFDGIL 133 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhc----CCCeEEEecCHHHhhcccCCCceEEEE
Confidence 4678999999999999999977653 48999999999999999987654 35799999999887 88889999999
Q ss_pred e-ccccccCC-----ChHHHHHHHHhcccCCcEEEEEEec
Q 020307 238 A-GAALHCWP-----SPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 238 ~-~~vl~h~~-----d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+ .+.+ +.+ ++..+++++.++|||||++++.+..
T Consensus 134 ~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 134 YDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp ECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 9 5553 222 3347799999999999999987643
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=135.95 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=90.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCccceEEe
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHA 238 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~i~~ 238 (328)
++.+|||||||+|.++..+++..+..+++|+|+|+.+++.|++++...+ ..++.++.+|+..++ +++++||.|++
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~---~~nv~~~~~d~~~l~~~~~~~~~d~v~~ 114 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE---AQNVKLLNIDADTLTDVFEPGEVKRVYL 114 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC---CSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcC---CCCEEEEeCCHHHHHhhcCcCCcCEEEE
Confidence 5679999999999999999999878899999999999999999988765 468999999998876 67889999987
Q ss_pred ccccccCCC--------hHHHHHHHHhcccCCcEEEEEEe
Q 020307 239 GAALHCWPS--------PSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 239 ~~vl~h~~d--------~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.....+... ...+++++.++|||||++++.+.
T Consensus 115 ~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 115 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred ECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 654322211 25789999999999999999874
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=132.20 Aligned_cols=125 Identities=19% Similarity=0.237 Sum_probs=103.0
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCC-Cccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS-GFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~-~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.+++++...+. ..++.+..+|+.. +++. ++||+
T Consensus 29 ~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~-~~~~~~~~D~ 103 (192)
T 1l3i_A 29 AEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGL--GDNVTLMEGDAPE-ALCKIPDIDI 103 (192)
T ss_dssp HCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTC--CTTEEEEESCHHH-HHTTSCCEEE
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCC--CcceEEEecCHHH-hcccCCCCCE
Confidence 445678899999999999999999987 4999999999999999999877652 3689999999865 2233 58999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
|++..+++ +...+++++.++|+|||++++.++... +..++.+++++.||.+
T Consensus 104 v~~~~~~~---~~~~~l~~~~~~l~~gG~l~~~~~~~~----------------------~~~~~~~~l~~~g~~~ 154 (192)
T 1l3i_A 104 AVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAILLE----------------------TKFEAMECLRDLGFDV 154 (192)
T ss_dssp EEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECBHH----------------------HHHHHHHHHHHTTCCC
T ss_pred EEECCchH---HHHHHHHHHHHhcCCCcEEEEEecCcc----------------------hHHHHHHHHHHCCCce
Confidence 99988775 468899999999999999999875421 2357889999999943
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.5e-16 Score=132.85 Aligned_cols=131 Identities=16% Similarity=0.154 Sum_probs=104.1
Q ss_pred cCCCeEEEEcCC-cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-CCCCCccceEE
Q 020307 160 AQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~i~ 237 (328)
.++.+|||+||| +|.++..+++.. ..+|+|+|+|+.+++.|++++...+ . ++.++.+|+..+ ++++++||+|+
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~-~v~~~~~d~~~~~~~~~~~fD~I~ 128 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNN---S-NVRLVKSNGGIIKGVVEGTFDVIF 128 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTT---C-CCEEEECSSCSSTTTCCSCEEEEE
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhC---C-CcEEEeCCchhhhhcccCceeEEE
Confidence 467899999999 999999999984 3499999999999999999988764 3 899999997433 35568999999
Q ss_pred eccccccCCC-------------------hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHH
Q 020307 238 AGAALHCWPS-------------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEE 298 (328)
Q Consensus 238 ~~~vl~h~~d-------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (328)
++-.+++..+ ...+++++.++|||||++++..+... ...+
T Consensus 129 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------~~~~ 187 (230)
T 3evz_A 129 SAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE---------------------KLLN 187 (230)
T ss_dssp ECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH---------------------HHHH
T ss_pred ECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH---------------------hHHH
Confidence 9866655433 36789999999999999999875421 1235
Q ss_pred HHHHHHHHCCCeEEEEEE
Q 020307 299 EIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 299 ~l~~ll~~~Gf~~v~~~~ 316 (328)
++.+++++.||++.....
T Consensus 188 ~~~~~l~~~g~~~~~~~~ 205 (230)
T 3evz_A 188 VIKERGIKLGYSVKDIKF 205 (230)
T ss_dssp HHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHcCCceEEEEe
Confidence 788999999998776544
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.7e-17 Score=137.51 Aligned_cols=107 Identities=22% Similarity=0.336 Sum_probs=94.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.++. +++|+|+|+.+++.++++... ..++.++.+|+..+++++++||+|++.
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~-----~~~i~~~~~d~~~~~~~~~~fD~v~~~ 114 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAH-----VPQLRWETMDVRKLDFPSASFDVVLEK 114 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTT-----CTTCEEEECCTTSCCSCSSCEEEEEEE
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhccc-----CCCcEEEEcchhcCCCCCCcccEEEEC
Confidence 46789999999999999999998743 899999999999999988654 458999999999988888999999999
Q ss_pred cccccCC---------------ChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 240 AALHCWP---------------SPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 240 ~vl~h~~---------------d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
.+++|+. ++..+++++.++|||||++++.++..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 115 GTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp SHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 9887765 55789999999999999999998654
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.1e-16 Score=127.02 Aligned_cols=123 Identities=16% Similarity=0.205 Sum_probs=103.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++ +..+++|+|+|+.+++.+++++...+ ..++.++.+|+.+ ++++++||+|
T Consensus 31 ~~~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~d~~~-~~~~~~~D~i 104 (183)
T 2yxd_A 31 LNLNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFN---IKNCQIIKGRAED-VLDKLEFNKA 104 (183)
T ss_dssp HCCCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTT---CCSEEEEESCHHH-HGGGCCCSEE
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcC---CCcEEEEECCccc-cccCCCCcEE
Confidence 4445678999999999999999998 45699999999999999999988765 3679999999877 6667899999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
++..+ .++..+++++.++ |||++++.++... +..++.+.++++||.+..
T Consensus 105 ~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~~----------------------~~~~~~~~l~~~g~~~~~ 153 (183)
T 2yxd_A 105 FIGGT----KNIEKIIEILDKK--KINHIVANTIVLE----------------------NAAKIINEFESRGYNVDA 153 (183)
T ss_dssp EECSC----SCHHHHHHHHHHT--TCCEEEEEESCHH----------------------HHHHHHHHHHHTTCEEEE
T ss_pred EECCc----ccHHHHHHHHhhC--CCCEEEEEecccc----------------------cHHHHHHHHHHcCCeEEE
Confidence 99988 6788999999998 9999999885421 135788999999986554
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-16 Score=130.14 Aligned_cols=107 Identities=19% Similarity=0.183 Sum_probs=85.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCccceEEe
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~i~~ 238 (328)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++...+ ..++.++..+...++ +.+++||+|++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~~--~~v~~vD~s~~~l~~a~~~~~~~~---~~~v~~~~~~~~~l~~~~~~~fD~v~~ 95 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGLS--KKVYAFDVQEQALGKTSQRLSDLG---IENTELILDGHENLDHYVREPIRAAIF 95 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHHT---CCCEEEEESCGGGGGGTCCSCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCcHHHHHhhccCCcCEEEE
Confidence 467899999999999999999984 499999999999999999998765 468999998877653 44778999988
Q ss_pred cc-cccc-------C-CChHHHHHHHHhcccCCcEEEEEEec
Q 020307 239 GA-ALHC-------W-PSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 239 ~~-vl~h-------~-~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+. .+++ . .+...+++++.++|||||++++..+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 96 NLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp EEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred eCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 73 3322 1 23357889999999999999998764
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.8e-16 Score=134.58 Aligned_cols=150 Identities=18% Similarity=0.191 Sum_probs=106.8
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC---CCCCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---LPFASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~---lp~~~~~ 232 (328)
+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.+.+..+. ..++.++.+|+.+ +++.+++
T Consensus 73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~-----~~~v~~~~~d~~~~~~~~~~~~~ 147 (233)
T 2ipx_A 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK-----RTNIIPVIEDARHPHKYRMLIAM 147 (233)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH-----CTTEEEECSCTTCGGGGGGGCCC
T ss_pred ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc-----cCCeEEEEcccCChhhhcccCCc
Confidence 33456889999999999999999987 4556999999999988877777665 4689999999977 4555789
Q ss_pred cceEEeccccccCCCh-HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 233 VDAVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~-~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
||+|++... .++. ..+++++.++|||||++++............... .+. ++ .++|+++||++
T Consensus 148 ~D~V~~~~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-----------~~~-~~-~~~l~~~Gf~~ 211 (233)
T 2ipx_A 148 VDVIFADVA---QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEA-----------VFA-SE-VKKMQQENMKP 211 (233)
T ss_dssp EEEEEECCC---CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHH-----------HHH-HH-HHTTGGGTEEE
T ss_pred EEEEEEcCC---CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHH-----------HHH-HH-HHHHHHCCCce
Confidence 999998544 2233 4568899999999999999654321000000000 011 23 48889999999
Q ss_pred EEEEEeCc----EEEEEEeC
Q 020307 312 YTSKVQQS----FIMFAAQK 327 (328)
Q Consensus 312 v~~~~~~~----~~~~~a~k 327 (328)
++.....+ .+++++++
T Consensus 212 ~~~~~~~~~~~~~~~v~~~~ 231 (233)
T 2ipx_A 212 QEQLTLEPYERDHAVVVGVY 231 (233)
T ss_dssp EEEEECTTTSSSEEEEEEEE
T ss_pred EEEEecCCccCCcEEEEEEe
Confidence 88655443 46666654
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-16 Score=137.16 Aligned_cols=128 Identities=20% Similarity=0.283 Sum_probs=107.1
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++. ++..+++++|+|+.+++.|+++++..++ ..++.++.+|+.+. +++++||+
T Consensus 89 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~-~~~~~~D~ 165 (255)
T 3mb5_A 89 AGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF--DDRVTIKLKDIYEG-IEEENVDH 165 (255)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC--TTTEEEECSCGGGC-CCCCSEEE
T ss_pred hCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC--CCceEEEECchhhc-cCCCCcCE
Confidence 45567889999999999999999998 7777999999999999999999987763 34599999999754 66788999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCC--CeEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG--LTNYT 313 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~G--f~~v~ 313 (328)
|++ +.+++..+++++.++|||||++++..+... ..+++.+.+++.| |..++
T Consensus 166 v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------------------~~~~~~~~l~~~g~~f~~~~ 218 (255)
T 3mb5_A 166 VIL-----DLPQPERVVEHAAKALKPGGFFVAYTPCSN----------------------QVMRLHEKLREFKDYFMKPR 218 (255)
T ss_dssp EEE-----CSSCGGGGHHHHHHHEEEEEEEEEEESSHH----------------------HHHHHHHHHHHTGGGBSCCE
T ss_pred EEE-----CCCCHHHHHHHHHHHcCCCCEEEEEECCHH----------------------HHHHHHHHHHHcCCCccccE
Confidence 997 567888999999999999999999875421 1346778889999 87665
Q ss_pred E
Q 020307 314 S 314 (328)
Q Consensus 314 ~ 314 (328)
.
T Consensus 219 ~ 219 (255)
T 3mb5_A 219 T 219 (255)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=142.65 Aligned_cols=154 Identities=17% Similarity=0.204 Sum_probs=112.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCc----CCCCCeEEEEecCCCCC----CC--C
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT----ILTSNLALVRADVCRLP----FA--S 230 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~----~~~~~i~~~~~d~~~lp----~~--~ 230 (328)
++.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.++++....+. ....++.++++|+..++ ++ +
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGR-INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 67899999999999999998753 56999999999999999998764310 00347899999998876 53 4
Q ss_pred CccceEEeccccccC-CC---hHHHHHHHHhcccCCcEEEEEEeccCCCCc--------chhhHH-----HHH-------
Q 020307 231 GFVDAVHAGAALHCW-PS---PSNAVAEISRILRSGGVFVGTTFLRYTSST--------SLTGRV-----LRE------- 286 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~-~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--------~~~~~~-----~~~------- 286 (328)
++||+|++..++||+ .+ +..+|+++.++|||||++++.+++...... .+ +.. +..
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~ 191 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESF-GNEIYTVKFQKKGDYPLF 191 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEE-ECSSEEEEESCSSCCCSS
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCcc-CCeeEEEEeCCCCCCCCc
Confidence 589999999999988 43 468999999999999999999986420000 00 000 000
Q ss_pred ----------hhhccCCCCCHHHHHHHHHHCCCeEEEEEE
Q 020307 287 ----------RILQNYNYLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 287 ----------~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
.........+.+++.++++++||+++....
T Consensus 192 ~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~ 231 (313)
T 3bgv_A 192 GCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKT 231 (313)
T ss_dssp CCEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEE
T ss_pred cceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecC
Confidence 000112246789999999999999998543
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=138.19 Aligned_cols=146 Identities=16% Similarity=0.062 Sum_probs=107.9
Q ss_pred CCCeEEEEcCCc--CHHHHH-HHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC------CCCC
Q 020307 161 QGGLLVDVSCGS--GLFSRK-FAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FASG 231 (328)
Q Consensus 161 ~~~~vLDiGcG~--G~~~~~-l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~~~ 231 (328)
...+|||||||+ +.++.. +.+..|..+|+++|.|+.|++.|++++.... ..++.++++|+.+++ ...+
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~---~~~~~~v~aD~~~~~~~l~~~~~~~ 154 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP---EGRTAYVEADMLDPASILDAPELRD 154 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS---SSEEEEEECCTTCHHHHHTCHHHHT
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC---CCcEEEEEecccChhhhhccccccc
Confidence 446899999997 334444 4445678899999999999999999886532 347999999998752 1134
Q ss_pred ccc-----eEEeccccccCCC---hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH---hhhccCCCCCHHHH
Q 020307 232 FVD-----AVHAGAALHCWPS---PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE---RILQNYNYLTEEEI 300 (328)
Q Consensus 232 ~fD-----~i~~~~vl~h~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l 300 (328)
.|| .|+++.+|||+++ |..+++++.+.|+|||+|++++..... .+...+.+.. .......+++.+++
T Consensus 155 ~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~--~p~~~~~~~~~~~~~g~p~~~rs~~ei 232 (277)
T 3giw_A 155 TLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEF--APQEVGRVAREYAARNMPMRLRTHAEA 232 (277)
T ss_dssp TCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTT--SHHHHHHHHHHHHHTTCCCCCCCHHHH
T ss_pred ccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCC--CHHHHHHHHHHHHhcCCCCccCCHHHH
Confidence 566 5889999999998 578999999999999999999877542 1111111111 12234678899999
Q ss_pred HHHHHHCCCeEEE
Q 020307 301 EDLCTSCGLTNYT 313 (328)
Q Consensus 301 ~~ll~~~Gf~~v~ 313 (328)
.++|. ||++++
T Consensus 233 ~~~f~--Glelve 243 (277)
T 3giw_A 233 EEFFE--GLELVE 243 (277)
T ss_dssp HHTTT--TSEECT
T ss_pred HHHhC--CCcccC
Confidence 99995 998654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=135.67 Aligned_cols=141 Identities=12% Similarity=0.142 Sum_probs=111.8
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+++++...+ ..++.++.+|+.+. +++++||+|+++
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~---~~~v~~~~~d~~~~-~~~~~fD~Iv~n 183 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA---IKNIHILQSDWFSA-LAGQQFAMIVSN 183 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT---CCSEEEECCSTTGG-GTTCCEEEEEEC
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCceEEEEcchhhh-cccCCccEEEEC
Confidence 45679999999999999999988777799999999999999999988765 34799999999763 446789999998
Q ss_pred -------------cccccCC------------ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCC
Q 020307 240 -------------AALHCWP------------SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNY 294 (328)
Q Consensus 240 -------------~vl~h~~------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (328)
.+++|.| +...+++++.++|||||++++... +
T Consensus 184 pPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~-----------------------~ 240 (276)
T 2b3t_A 184 PPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG-----------------------W 240 (276)
T ss_dssp CCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-----------------------S
T ss_pred CCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-----------------------c
Confidence 4555544 236789999999999999998642 2
Q ss_pred CCHHHHHHHHHHCCCeEEEEEE--eCcEEEEEEeC
Q 020307 295 LTEEEIEDLCTSCGLTNYTSKV--QQSFIMFAAQK 327 (328)
Q Consensus 295 ~~~~~l~~ll~~~Gf~~v~~~~--~~~~~~~~a~k 327 (328)
.+.+++.++++++||+.++... .+.--+++++|
T Consensus 241 ~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 241 QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred hHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 3567899999999998665433 33345555654
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4e-16 Score=133.81 Aligned_cols=108 Identities=15% Similarity=0.157 Sum_probs=90.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C--CCCCccceEE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P--FASGFVDAVH 237 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p--~~~~~fD~i~ 237 (328)
++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.|++++...+ ..++.++++|+.++ + +++++||.|+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~---l~nv~~~~~Da~~~l~~~~~~~~~d~v~ 110 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEG---LSNLRVMCHDAVEVLHKMIPDNSLRMVQ 110 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTT---CSSEEEECSCHHHHHHHHSCTTCEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhC---CCcEEEEECCHHHHHHHHcCCCChheEE
Confidence 5679999999999999999999888889999999999999999988766 56899999998763 3 6789999999
Q ss_pred eccccccCCCh--------HHHHHHHHhcccCCcEEEEEEec
Q 020307 238 AGAALHCWPSP--------SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 238 ~~~vl~h~~d~--------~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+++...+.... ..+++++.++|||||++++.+..
T Consensus 111 ~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~ 152 (218)
T 3dxy_A 111 LFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW 152 (218)
T ss_dssp EESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC
Confidence 87543322221 25899999999999999998853
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.3e-16 Score=136.04 Aligned_cols=128 Identities=13% Similarity=0.076 Sum_probs=108.1
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEEecCCCCCCCCCccc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRLPFASGFVD 234 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~~~lp~~~~~fD 234 (328)
+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.|++++... + ..++.+..+|+.+.++++++||
T Consensus 92 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g---~~~v~~~~~d~~~~~~~~~~~D 168 (258)
T 2pwy_A 92 LDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ---VENVRFHLGKLEEAELEEAAYD 168 (258)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC---CCCEEEEESCGGGCCCCTTCEE
T ss_pred cCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC---CCCEEEEECchhhcCCCCCCcC
Confidence 45567889999999999999999998 66679999999999999999998765 4 4689999999988877788999
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
+|++ +++++..+++++.++|||||++++.++... ...++.+.++++||..++.
T Consensus 169 ~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------------------~~~~~~~~l~~~gf~~~~~ 221 (258)
T 2pwy_A 169 GVAL-----DLMEPWKVLEKAALALKPDRFLVAYLPNIT----------------------QVLELVRAAEAHPFRLERV 221 (258)
T ss_dssp EEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESCHH----------------------HHHHHHHHHTTTTEEEEEE
T ss_pred EEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHH----------------------HHHHHHHHHHHCCCceEEE
Confidence 9997 467888999999999999999999885421 1246667788899987664
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-15 Score=124.56 Aligned_cols=118 Identities=17% Similarity=0.166 Sum_probs=99.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+ +|+|+|+|+.+++. ..++.++++|+.+ ++++++||+|+++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~------------~~~~~~~~~d~~~-~~~~~~fD~i~~n 85 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES------------HRGGNLVRADLLC-SINQESVDVVVFN 85 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT------------CSSSCEEECSTTT-TBCGGGCSEEEEC
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc------------ccCCeEEECChhh-hcccCCCCEEEEC
Confidence 457799999999999999999987 99999999999976 1267899999977 5667899999999
Q ss_pred cccccCCCh---------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCe
Q 020307 240 AALHCWPSP---------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 240 ~vl~h~~d~---------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
..+++.+++ ..+++++.+.| |||++++.++.. .+.+++.++++++||+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~----------------------~~~~~l~~~l~~~gf~ 142 (170)
T 3q87_B 86 PPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA----------------------NRPKEVLARLEERGYG 142 (170)
T ss_dssp CCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG----------------------GCHHHHHHHHHHTTCE
T ss_pred CCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC----------------------CCHHHHHHHHHHCCCc
Confidence 888877665 57889999999 999999988542 2457899999999998
Q ss_pred EEEEEE
Q 020307 311 NYTSKV 316 (328)
Q Consensus 311 ~v~~~~ 316 (328)
.+....
T Consensus 143 ~~~~~~ 148 (170)
T 3q87_B 143 TRILKV 148 (170)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 776533
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=134.09 Aligned_cols=145 Identities=11% Similarity=0.168 Sum_probs=111.1
Q ss_pred cccc-CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCcc
Q 020307 157 FKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFV 233 (328)
Q Consensus 157 l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~f 233 (328)
+... ++.+|||+|||+|.++..+++.++. +|+|+|+++.+++.|++++...++ ..++.++.+|+.+++ +++++|
T Consensus 44 ~~~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~--~~~v~~~~~D~~~~~~~~~~~~f 120 (259)
T 3lpm_A 44 SYLPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQL--EDQIEIIEYDLKKITDLIPKERA 120 (259)
T ss_dssp CCCCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTC--TTTEEEECSCGGGGGGTSCTTCE
T ss_pred hcCCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCC--cccEEEEECcHHHhhhhhccCCc
Confidence 4445 6889999999999999999998653 999999999999999999988764 457999999998765 457899
Q ss_pred ceEEeccccccC-----C---------------ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCC
Q 020307 234 DAVHAGAALHCW-----P---------------SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYN 293 (328)
Q Consensus 234 D~i~~~~vl~h~-----~---------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (328)
|+|+++-.+.+. . +...+++.+.++|||||++++..+.
T Consensus 121 D~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------- 178 (259)
T 3lpm_A 121 DIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP---------------------- 178 (259)
T ss_dssp EEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT----------------------
T ss_pred cEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH----------------------
Confidence 999996443222 1 2356899999999999999996532
Q ss_pred CCCHHHHHHHHHHCCCeEEEEEEe-------CcEEEEEEeC
Q 020307 294 YLTEEEIEDLCTSCGLTNYTSKVQ-------QSFIMFAAQK 327 (328)
Q Consensus 294 ~~~~~~l~~ll~~~Gf~~v~~~~~-------~~~~~~~a~k 327 (328)
....++...+++.||...+.... ...+++.++|
T Consensus 179 -~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k 218 (259)
T 3lpm_A 179 -ERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIK 218 (259)
T ss_dssp -TTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEE
T ss_pred -HHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEEe
Confidence 23457888899999987765331 2345565554
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-15 Score=128.42 Aligned_cols=151 Identities=11% Similarity=0.063 Sum_probs=105.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~ 232 (328)
+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++...+.... ..++.++.+|+.... ...++
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-----r~nv~~i~~Da~~~~~~~~~~~~ 146 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-----RPNIFPLLADARFPQSYKSVVEN 146 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-----CTTEEEEECCTTCGGGTTTTCCC
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCeEEEEcccccchhhhccccc
Confidence 34668999999999999999999886 5677999999999987655544443 468999999997643 12468
Q ss_pred cceEEeccccccCCChHHHH-HHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 233 VDAVHAGAALHCWPSPSNAV-AEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l-~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
||+|++.... ++....+ ..+.++|||||+++++..... . .... .....+ ++..+.|+++||++
T Consensus 147 ~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik~~~---~-------d~t~-~~~e~~--~~~~~~L~~~gf~~ 210 (232)
T 3id6_C 147 VDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARS---I-------DVTK-DPKEIY--KTEVEKLENSNFET 210 (232)
T ss_dssp EEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC-----------------C-CSSSST--THHHHHHHHTTEEE
T ss_pred eEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEccCC---c-------ccCC-CHHHHH--HHHHHHHHHCCCEE
Confidence 9999987553 5555554 455669999999999853211 0 0000 011111 34567788999999
Q ss_pred EEEEEeCcE----EEEEEeCC
Q 020307 312 YTSKVQQSF----IMFAAQKP 328 (328)
Q Consensus 312 v~~~~~~~~----~~~~a~k~ 328 (328)
++...-.+| ++++++|+
T Consensus 211 ~~~~~l~p~~~~h~~v~~~~~ 231 (232)
T 3id6_C 211 IQIINLDPYDKDHAIVLSKYK 231 (232)
T ss_dssp EEEEECTTTCSSCEEEEEEEC
T ss_pred EEEeccCCCcCceEEEEEEeC
Confidence 997775554 77777763
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.1e-16 Score=129.12 Aligned_cols=112 Identities=17% Similarity=0.266 Sum_probs=92.3
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCccceE
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAV 236 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~i 236 (328)
..++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.|++++...++ ..++.++++|+..++ +.+++||+|
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~v 97 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL--IDRVTLIKDGHQNMDKYIDCPVKAV 97 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC--GGGEEEECSCGGGGGGTCCSCEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCCeEEEECCHHHHhhhccCCceEE
Confidence 356789999999999999999987 3456999999999999999999887653 368999999998775 556899999
Q ss_pred Eeccccc---------cCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 237 HAGAALH---------CWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 237 ~~~~vl~---------h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
++...+. +..++..+++++.++|||||++++..+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred EEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 9887551 11134579999999999999999988654
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.7e-16 Score=130.28 Aligned_cols=104 Identities=18% Similarity=0.140 Sum_probs=92.2
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++...+ ..++.++.+|+.+.+..+++||+|
T Consensus 73 l~~~~~~~vLdiG~G~G~~~~~la~~~~--~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~D~i 147 (210)
T 3lbf_A 73 LELTPQSRVLEIGTGSGYQTAILAHLVQ--HVCSVERIKGLQWQARRRLKNLD---LHNVSTRHGDGWQGWQARAPFDAI 147 (210)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGCCGGGCCEEEE
T ss_pred cCCCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEecCHHHHHHHHHHHHHcC---CCceEEEECCcccCCccCCCccEE
Confidence 4456788999999999999999999854 99999999999999999998766 458999999998766667899999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++..+++|+++ ++.++|||||++++..+.
T Consensus 148 ~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 148 IVTAAPPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred EEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence 99999999986 578999999999998876
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-16 Score=128.89 Aligned_cols=150 Identities=11% Similarity=0.049 Sum_probs=110.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.+..+|||+|||+|.++..++...|..+|+++|+|+.|++.+++++...+. ..++.+ .|.... .+.++||+|++.
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~--~~~v~~--~d~~~~-~~~~~~DvVLa~ 122 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKT--TIKYRF--LNKESD-VYKGTYDVVFLL 122 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCC--SSEEEE--ECCHHH-HTTSEEEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CccEEE--eccccc-CCCCCcChhhHh
Confidence 457799999999999999999998888999999999999999999988663 224555 666443 346789999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeCc
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS 319 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~ 319 (328)
.+|||+.+....+..+.+.|||||+++...--.-. +.. ..+.-.-...|++.+ ...+.++++...++
T Consensus 123 k~LHlL~~~~~al~~v~~~L~pggvfISfptksl~-----------Gr~-~gm~~~Y~~~~~~~~-~~~~~~~~~~~~~n 189 (200)
T 3fzg_A 123 KMLPVLKQQDVNILDFLQLFHTQNFVISFPIKSLS-----------GKE-KGMEENYQLWFESFT-KGWIKILDSKVIGN 189 (200)
T ss_dssp TCHHHHHHTTCCHHHHHHTCEEEEEEEEEECCCCC-------------C-TTCCCCHHHHHHHHT-TTTSCEEEEEEETT
T ss_pred hHHHhhhhhHHHHHHHHHHhCCCCEEEEeChHHhc-----------CCC-cchhhhHHHHHHHhc-cCcceeeeeeeeCc
Confidence 99999977778888999999999988776611100 000 112222244666666 56666777677776
Q ss_pred EEEEEEeC
Q 020307 320 FIMFAAQK 327 (328)
Q Consensus 320 ~~~~~a~k 327 (328)
-++++-+|
T Consensus 190 El~y~~~~ 197 (200)
T 3fzg_A 190 ELVYITSG 197 (200)
T ss_dssp EEEEEECC
T ss_pred eEEEEEec
Confidence 65555443
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-15 Score=127.71 Aligned_cols=121 Identities=21% Similarity=0.185 Sum_probs=99.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|.++..++...+..+++|+|+|+.+++.+++++...+ ..++.++.+|+..++ +.++||+|++..
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~-~~~~~D~i~~~~ 140 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK---LENIEPVQSRVEEFP-SEPPFDGVISRA 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT---CSSEEEEECCTTTSC-CCSCEEEEECSC
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEecchhhCC-ccCCcCEEEEec
Confidence 4789999999999999999998777799999999999999999988765 446999999998876 457899999754
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
+.++..+++++.++|+|||++++.... ...+++.++++ ||+.++.
T Consensus 141 ----~~~~~~~l~~~~~~L~~gG~l~~~~~~-----------------------~~~~~~~~~~~--g~~~~~~ 185 (207)
T 1jsx_A 141 ----FASLNDMVSWCHHLPGEQGRFYALKGQ-----------------------MPEDEIALLPE--EYQVESV 185 (207)
T ss_dssp ----SSSHHHHHHHHTTSEEEEEEEEEEESS-----------------------CCHHHHHTSCT--TEEEEEE
T ss_pred ----cCCHHHHHHHHHHhcCCCcEEEEEeCC-----------------------CchHHHHHHhc--CCceeee
Confidence 356789999999999999999997521 23456666655 9987763
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.7e-16 Score=134.70 Aligned_cols=129 Identities=12% Similarity=-0.033 Sum_probs=105.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC---CCccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~i 236 (328)
.++.+|||||||+|..+..++...+..+|+++|+|+.+++.+++++...+ ..++.++.+|+++++.. +++||+|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---l~~v~~~~~d~~~~~~~~~~~~~fD~I 155 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLG---LKGARALWGRAEVLAREAGHREAYARA 155 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT---CSSEEEEECCHHHHTTSTTTTTCEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC---CCceEEEECcHHHhhcccccCCCceEE
Confidence 46789999999999999999998778899999999999999999998876 45699999999877643 4789999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
++..+ .+...+++.+.++|||||++++...... .. ...++...++..||++.+..
T Consensus 156 ~s~a~----~~~~~ll~~~~~~LkpgG~l~~~~g~~~-------~~-------------e~~~~~~~l~~~G~~~~~~~ 210 (249)
T 3g89_A 156 VARAV----APLCVLSELLLPFLEVGGAAVAMKGPRV-------EE-------------ELAPLPPALERLGGRLGEVL 210 (249)
T ss_dssp EEESS----CCHHHHHHHHGGGEEEEEEEEEEECSCC-------HH-------------HHTTHHHHHHHHTEEEEEEE
T ss_pred EECCc----CCHHHHHHHHHHHcCCCeEEEEEeCCCc-------HH-------------HHHHHHHHHHHcCCeEEEEE
Confidence 98654 5678999999999999999998663211 11 12357778889999887754
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=128.11 Aligned_cols=110 Identities=19% Similarity=0.138 Sum_probs=94.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~i~ 237 (328)
.++.+|||+|||+|.++..++..+ ..+|+|+|+|+.+++.|++++...+ ..++.++++|+.+++ +++++||+|+
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~fD~i~ 118 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRG-AASVLFVESDQRSAAVIARNIEALG---LSGATLRRGAVAAVVAAGTTSPVDLVL 118 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEECCHHHHHHHHHHHHHHT---CSCEEEEESCHHHHHHHCCSSCCSEEE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcC---CCceEEEEccHHHHHhhccCCCccEEE
Confidence 467899999999999999888764 4589999999999999999988765 468999999997754 3468999999
Q ss_pred eccccccC-CChHHHHHHHHh--cccCCcEEEEEEeccC
Q 020307 238 AGAALHCW-PSPSNAVAEISR--ILRSGGVFVGTTFLRY 273 (328)
Q Consensus 238 ~~~vl~h~-~d~~~~l~~~~r--~LkpgG~l~i~~~~~~ 273 (328)
+...+++. ++...+++++.+ +|||||++++..+...
T Consensus 119 ~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 119 ADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTC 157 (189)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred ECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence 99887775 567889999999 9999999999887653
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.5e-16 Score=132.97 Aligned_cols=109 Identities=19% Similarity=0.258 Sum_probs=87.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh------cCcCCCCCeEEEEecCCC-CC--CCC
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ------DNTILTSNLALVRADVCR-LP--FAS 230 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~------~~~~~~~~i~~~~~d~~~-lp--~~~ 230 (328)
.++.+|||||||+|.++..+++..+...++|+|+|+.+++.|++++.. .+ ..++.++++|+.. ++ +++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~---~~nv~~~~~d~~~~l~~~~~~ 121 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGG---FQNIACLRSNAMKHLPNFFYK 121 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCC---CTTEEEEECCTTTCHHHHCCT
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcC---CCeEEEEECcHHHhhhhhCCC
Confidence 456799999999999999999998888999999999999999987653 22 5689999999986 66 778
Q ss_pred CccceEEeccccccCCC--------hHHHHHHHHhcccCCcEEEEEEec
Q 020307 231 GFVDAVHAGAALHCWPS--------PSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d--------~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++||.|++...-.+... ...+++++.++|||||.|++.+..
T Consensus 122 ~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~ 170 (235)
T 3ckk_A 122 GQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV 170 (235)
T ss_dssp TCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence 99999987543222110 136899999999999999998754
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.1e-15 Score=131.67 Aligned_cols=130 Identities=15% Similarity=0.155 Sum_probs=106.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+.. +|+|+|+|+.+++.|++++...++ ..++.++++|+.+++. +++||+|++.
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~--~~~v~~~~~D~~~~~~-~~~fD~Vi~~ 199 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKV--EDRMSAYNMDNRDFPG-ENIADRILMG 199 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTC--TTTEEEECSCTTTCCC-CSCEEEEEEC
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCC--CceEEEEECCHHHhcc-cCCccEEEEC
Confidence 35789999999999999999999763 699999999999999999987764 4459999999988875 7789999985
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
.. .+...+++++.++|||||++++.+..... ....-..+++.+.++++||+...
T Consensus 200 ~p----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~----------------~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 200 YV----VRTHEFIPKALSIAKDGAIIHYHNTVPEK----------------LMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp CC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGG----------------GTTTTTHHHHHHHHHHTTCEEEE
T ss_pred Cc----hhHHHHHHHHHHHCCCCeEEEEEEeeccc----------------cccccHHHHHHHHHHHcCCeeEE
Confidence 33 45568899999999999999998875421 11123456888999999997655
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-14 Score=123.91 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=107.1
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCCCccc
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVD 234 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD 234 (328)
..++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.++++++. ..++.++.+|+.... ...++||
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~D 145 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-----RRNIVPILGDATKPEEYRALVPKVD 145 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-----CTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc-----cCCCEEEEccCCCcchhhcccCCce
Confidence 457889999999999999999987 5556999999999999999888765 468999999997632 1235899
Q ss_pred eEEeccccccCCChH-HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 235 AVHAGAALHCWPSPS-NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
+|++... .++.. .+++++.++|||||++++..........+. ...+..+++..+ +++ |++++
T Consensus 146 ~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------------~~~~~~~~l~~l-~~~-f~~~~ 208 (227)
T 1g8a_A 146 VIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKE------------PEQVFREVEREL-SEY-FEVIE 208 (227)
T ss_dssp EEEECCC---STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSC------------HHHHHHHHHHHH-HTT-SEEEE
T ss_pred EEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCC------------hhhhhHHHHHHH-Hhh-ceeee
Confidence 9997654 23333 459999999999999999843221111110 002235677777 777 99988
Q ss_pred EEEeCc----EEEEEEeC
Q 020307 314 SKVQQS----FIMFAAQK 327 (328)
Q Consensus 314 ~~~~~~----~~~~~a~k 327 (328)
.....+ .++++++|
T Consensus 209 ~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 209 RLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp EEECTTTSSSEEEEEEEC
T ss_pred EeccCcccCCCEEEEEEe
Confidence 665433 47777776
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-16 Score=134.42 Aligned_cols=130 Identities=16% Similarity=0.045 Sum_probs=85.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCC-----Cccc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS-----GFVD 234 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~-----~~fD 234 (328)
.++.+|||+|||+|.++..+++.++..+++|+|+|+.+++.+++++...+ . ++.++++|+.+ ++++ ++||
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~-~~~~~~~d~~~-~~~~~~~~~~~fD 103 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG---A-VVDWAAADGIE-WLIERAERGRPWH 103 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-----------------------CCHHHHHH-HHHHHHHTTCCBS
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC---C-ceEEEEcchHh-hhhhhhhccCccc
Confidence 56789999999999999999999877799999999999999999877643 2 78888899876 5555 8999
Q ss_pred eEEeccccc------cCCCh--------------------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhh
Q 020307 235 AVHAGAALH------CWPSP--------------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI 288 (328)
Q Consensus 235 ~i~~~~vl~------h~~d~--------------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 288 (328)
+|+++..++ |+... ..+++++.++|||||++++.+..
T Consensus 104 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------------- 166 (215)
T 4dzr_A 104 AIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG----------------- 166 (215)
T ss_dssp EEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT-----------------
T ss_pred EEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC-----------------
Confidence 999964432 22211 67789999999999995554422
Q ss_pred hccCCCCCHHHHHHHHH--HCCCeEEEEEE
Q 020307 289 LQNYNYLTEEEIEDLCT--SCGLTNYTSKV 316 (328)
Q Consensus 289 ~~~~~~~~~~~l~~ll~--~~Gf~~v~~~~ 316 (328)
....+++.++++ +.||..++...
T Consensus 167 -----~~~~~~~~~~l~~~~~gf~~~~~~~ 191 (215)
T 4dzr_A 167 -----HNQADEVARLFAPWRERGFRVRKVK 191 (215)
T ss_dssp -----TSCHHHHHHHTGGGGGGTEECCEEE
T ss_pred -----CccHHHHHHHHHHhhcCCceEEEEE
Confidence 124567888999 99997766443
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=9e-15 Score=125.32 Aligned_cols=139 Identities=9% Similarity=0.043 Sum_probs=109.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||||||+|.++..+++.++..+|+++|+++.+++.|++++...++ ..++.+..+|..+...+++.||+|+..
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl--~~~I~~~~gD~l~~~~~~~~~D~Ivia 97 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL--TSKIDVRLANGLSAFEEADNIDTITIC 97 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTC--TTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchhhccccccccCEEEEe
Confidence 357899999999999999999998777899999999999999999998875 567999999987765444479998876
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE---E
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK---V 316 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~---~ 316 (328)
+..-. -...+|.+..+.|+++|+|+++... ..+.++++|.+.||.+++.. .
T Consensus 98 GmGg~--lI~~IL~~~~~~l~~~~~lIlqp~~------------------------~~~~lr~~L~~~Gf~i~~E~lv~e 151 (230)
T 3lec_A 98 GMGGR--LIADILNNDIDKLQHVKTLVLQPNN------------------------REDDLRKWLAANDFEIVAEDILTE 151 (230)
T ss_dssp EECHH--HHHHHHHHTGGGGTTCCEEEEEESS------------------------CHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred CCchH--HHHHHHHHHHHHhCcCCEEEEECCC------------------------ChHHHHHHHHHCCCEEEEEEEEEE
Confidence 55331 1356788889999999999986621 35789999999999988864 2
Q ss_pred eCcE-EEEEEe
Q 020307 317 QQSF-IMFAAQ 326 (328)
Q Consensus 317 ~~~~-~~~~a~ 326 (328)
.+.| .++.+.
T Consensus 152 ~~~~Yeii~~~ 162 (230)
T 3lec_A 152 NDKRYEILVVK 162 (230)
T ss_dssp --CEEEEEEEE
T ss_pred CCEEEEEEEEE
Confidence 4444 344443
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=135.53 Aligned_cols=149 Identities=13% Similarity=0.121 Sum_probs=108.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc--CcCCCCCeEEEEecCCCCCC--CCCccce
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRLPF--ASGFVDA 235 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~lp~--~~~~fD~ 235 (328)
.++.+|||||||+|.++..+++..+..+++++|+|+.+++.|++++... +. ..+++.++.+|+...+. .+++||+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~-~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSL-ADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG-GCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhccc-CCCcEEEEECcHHHHHHhccCCceeE
Confidence 4568999999999999999998865679999999999999999987421 11 15689999999876543 3678999
Q ss_pred EEeccccccCCCh----HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 236 VHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 236 i~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
|++.....+.+.. ..+++++.++|||||++++...+. +. .....+++.+.++++||..
T Consensus 173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~------~~------------~~~~~~~~~~~l~~~GF~~ 234 (304)
T 3bwc_A 173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI------WL------------DLELIEKMSRFIRETGFAS 234 (304)
T ss_dssp EEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT------TT------------CHHHHHHHHHHHHHHTCSE
T ss_pred EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc------cc------------chHHHHHHHHHHHhCCCCc
Confidence 9997665544333 588999999999999999976432 10 0113467888999999988
Q ss_pred EEEEE-------eCcEEEEEEeC
Q 020307 312 YTSKV-------QQSFIMFAAQK 327 (328)
Q Consensus 312 v~~~~-------~~~~~~~~a~k 327 (328)
++... .+.|..+.+.|
T Consensus 235 v~~~~~~vP~yp~g~w~f~~as~ 257 (304)
T 3bwc_A 235 VQYALMHVPTYPCGSIGTLVCSK 257 (304)
T ss_dssp EEEEECCCTTSTTSCCEEEEEES
T ss_pred EEEEEeecccccCcceEEEEEeC
Confidence 77543 23444555554
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-15 Score=132.74 Aligned_cols=128 Identities=18% Similarity=0.225 Sum_probs=105.9
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.|++++...++ ..++.++.+|+.+. +++++||+
T Consensus 108 ~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~-~~~~~~D~ 184 (277)
T 1o54_A 108 LDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL--IERVTIKVRDISEG-FDEKDVDA 184 (277)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC--GGGEEEECCCGGGC-CSCCSEEE
T ss_pred hCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC--CCCEEEEECCHHHc-ccCCccCE
Confidence 45567889999999999999999998 6677999999999999999999887653 35799999999775 56678999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
|++ +.+++..+++++.++|+|||++++.++... ...++.+.+++.||..++.
T Consensus 185 V~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~----------------------~~~~~~~~l~~~gf~~~~~ 236 (277)
T 1o54_A 185 LFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTTN----------------------QVQETLKKLQELPFIRIEV 236 (277)
T ss_dssp EEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSHH----------------------HHHHHHHHHHHSSEEEEEE
T ss_pred EEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCCHH----------------------HHHHHHHHHHHCCCceeEE
Confidence 997 457888999999999999999999885321 1245667788899987764
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=132.61 Aligned_cols=103 Identities=16% Similarity=0.246 Sum_probs=84.2
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-----CCC
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----ASG 231 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-----~~~ 231 (328)
+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++... ++..++..++. .++
T Consensus 41 l~l~~g~~VLDlGcGtG~~a~~La~~g~--~V~gvD~S~~ml~~Ar~~~~~~---------~v~~~~~~~~~~~~~~~~~ 109 (261)
T 3iv6_A 41 ENIVPGSTVAVIGASTRFLIEKALERGA--SVTVFDFSQRMCDDLAEALADR---------CVTIDLLDITAEIPKELAG 109 (261)
T ss_dssp TTCCTTCEEEEECTTCHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTSSS---------CCEEEECCTTSCCCGGGTT
T ss_pred cCCCCcCEEEEEeCcchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHhc---------cceeeeeecccccccccCC
Confidence 5566788999999999999999999876 9999999999999999986431 23344443332 256
Q ss_pred ccceEEeccccccCCC--hHHHHHHHHhcccCCcEEEEEEec
Q 020307 232 FVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+||+|++..+++|+.. ...+++++.++| |||+++++...
T Consensus 110 ~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 110 HFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred CccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 8999999999999864 457899999999 99999998754
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.7e-15 Score=135.61 Aligned_cols=106 Identities=23% Similarity=0.335 Sum_probs=92.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|+++++..++ ..++.++.+|+.++++++++||+|
T Consensus 60 ~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~gvD~s~-~~~~a~~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~D~I 135 (340)
T 2fyt_A 60 PHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSE-ILYQAMDIIRLNKL--EDTITLIKGKIEEVHLPVEKVDVI 135 (340)
T ss_dssp GGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESST-HHHHHHHHHHHTTC--TTTEEEEESCTTTSCCSCSCEEEE
T ss_pred hhhcCCCEEEEeeccCcHHHHHHHHcC-CCEEEEEChHH-HHHHHHHHHHHcCC--CCcEEEEEeeHHHhcCCCCcEEEE
Confidence 344578899999999999999999985 45899999997 99999999887663 478999999999998888899999
Q ss_pred Eecc---ccccCCChHHHHHHHHhcccCCcEEE
Q 020307 237 HAGA---ALHCWPSPSNAVAEISRILRSGGVFV 266 (328)
Q Consensus 237 ~~~~---vl~h~~d~~~~l~~~~r~LkpgG~l~ 266 (328)
++.. .+.|..++..+++++.++|||||+++
T Consensus 136 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 136 ISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 9876 56676778889999999999999987
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=134.90 Aligned_cols=114 Identities=14% Similarity=0.124 Sum_probs=92.6
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.+|..+|+|+|+|+.+++.+++++...++....++.++.+|+.+ ++++++||+|
T Consensus 218 l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~I 296 (375)
T 4dcm_A 218 LPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAV 296 (375)
T ss_dssp CCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEE
T ss_pred CcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEE
Confidence 444566899999999999999999998778999999999999999999887653212368899999977 4567899999
Q ss_pred EeccccccCC---Ch--HHHHHHHHhcccCCcEEEEEEec
Q 020307 237 HAGAALHCWP---SP--SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 237 ~~~~vl~h~~---d~--~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+++..+++.. +. ..+++++.++|||||+++++...
T Consensus 297 i~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 297 LCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp EECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred EECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 9998887632 22 36899999999999999997743
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-15 Score=138.87 Aligned_cols=115 Identities=13% Similarity=0.136 Sum_probs=93.8
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH-------hcCcCCCCCeEEEEecCCCCCCC
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK-------QDNTILTSNLALVRADVCRLPFA 229 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-------~~~~~~~~~i~~~~~d~~~lp~~ 229 (328)
+...++.+|||||||+|.++..++...+..+++|+|+|+.+++.|+++.+ ..++. ..++.|+++|+.++|+.
T Consensus 169 l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~-~~rVefi~GD~~~lp~~ 247 (438)
T 3uwp_A 169 IKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK-HAEYTLERGDFLSEEWR 247 (438)
T ss_dssp HCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC-CCEEEEEECCTTSHHHH
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC-CCCeEEEECcccCCccc
Confidence 45678899999999999999999987544469999999999999987542 22320 25899999999998875
Q ss_pred C--CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 230 S--GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 230 ~--~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
+ ..||+|+++..+ +.+++...|+++.++|||||+|++.+....
T Consensus 248 d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 248 ERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp HHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred cccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence 4 479999998765 457888999999999999999999877654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7e-15 Score=136.20 Aligned_cols=105 Identities=18% Similarity=0.225 Sum_probs=92.7
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++...+ .++.++.+|+.+.+.++++||+|+++.
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~--~V~gvDis~~al~~A~~n~~~~~----~~v~~~~~D~~~~~~~~~~fD~Ii~np 306 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGA--EVVGVEDDLASVLSLQKGLEANA----LKAQALHSDVDEALTEEARFDIIVTNP 306 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTC--EEEEEESBHHHHHHHHHHHHHTT----CCCEEEECSTTTTSCTTCCEEEEEECC
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcC----CCeEEEEcchhhccccCCCeEEEEECC
Confidence 678999999999999999999865 99999999999999999988754 358999999988876678999999999
Q ss_pred cccc-----CCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 241 ALHC-----WPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 241 vl~h-----~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
.+++ ..+...+++++.++|||||+++++...
T Consensus 307 p~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 307 PFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp CCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred chhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 9888 445678999999999999999998743
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=6.6e-15 Score=135.13 Aligned_cols=107 Identities=15% Similarity=0.239 Sum_probs=92.3
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|||||||+|.++..+++.+ ..+|+|+|+| .+++.|++++...++ ..++.++.+|+.++++++++||+|++
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~g-~~~v~gvD~s-~~l~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~fD~Iis 139 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECS-SISDYAVKIVKANKL--DHVVTIIKGKVEEVELPVEKVDIIIS 139 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHTT-CSEEEEEECS-THHHHHHHHHHHTTC--TTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred cCCCCEEEEEeccchHHHHHHHHCC-CCEEEEECcH-HHHHHHHHHHHHcCC--CCcEEEEECcHHHccCCCCceEEEEE
Confidence 4578899999999999999999984 4599999999 499999999987764 45699999999999988899999998
Q ss_pred ccc---cccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 239 GAA---LHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 239 ~~v---l~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
..+ +.+..++..+++++.++|||||+++...
T Consensus 140 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~ 173 (349)
T 3q7e_A 140 EWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDR 173 (349)
T ss_dssp CCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred ccccccccCchhHHHHHHHHHHhCCCCCEEcccc
Confidence 765 4455788999999999999999987543
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=8e-17 Score=140.05 Aligned_cols=142 Identities=14% Similarity=0.147 Sum_probs=111.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++...++ ..++.++++|+.+++ ++++||+|++.
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~~--~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~-~~~~~D~v~~~ 151 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTGM--RVIAIDIDPVKIALARNNAEVYGI--ADKIEFICGDFLLLA-SFLKADVVFLS 151 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHHHG-GGCCCSEEEEC
T ss_pred cCCCEEEECccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCC--CcCeEEEECChHHhc-ccCCCCEEEEC
Confidence 3688999999999999999999874 999999999999999999887653 258999999998776 56799999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
.+++|..++...+.++.++|+|||++++.......... ........+.+++..++...|...++...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~~~~~~~~~----------~~~lp~~~~~~~~~~~l~~~g~~~i~~~~ 218 (241)
T 3gdh_A 152 PPWGGPDYATAETFDIRTMMSPDGFEIFRLSKKITNNI----------VYFLPRNADIDQVASLAGPGGQVEIEQNF 218 (241)
T ss_dssp CCCSSGGGGGSSSBCTTTSCSSCHHHHHHHHHHHCSCE----------EEEEETTBCHHHHHHTTCTTCCEEEEEEE
T ss_pred CCcCCcchhhhHHHHHHhhcCCcceeHHHHHHhhCCce----------EEECCCCCCHHHHHHHhccCCCEEEEehh
Confidence 99999888877888999999999986654321110000 01223456778888888888876665433
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-14 Score=126.16 Aligned_cols=112 Identities=14% Similarity=0.101 Sum_probs=90.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh---cCcCCCCCeEEEEecCCCC-------
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ---DNTILTSNLALVRADVCRL------- 226 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~---~~~~~~~~i~~~~~d~~~l------- 226 (328)
+...++.+|||+|||+|.++..+++..+..+++|+|+++.+++.|++++.. .++ ..++.++.+|+.++
T Consensus 32 ~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l--~~~v~~~~~D~~~~~~~~~~~ 109 (260)
T 2ozv_A 32 VADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF--SARIEVLEADVTLRAKARVEA 109 (260)
T ss_dssp CCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTT--GGGEEEEECCTTCCHHHHHHT
T ss_pred hcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCC--cceEEEEeCCHHHHhhhhhhh
Confidence 444567899999999999999999998777999999999999999999876 543 34699999999876
Q ss_pred CCCCCccceEEecccccc------------------CCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 227 PFASGFVDAVHAGAALHC------------------WPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 227 p~~~~~fD~i~~~~vl~h------------------~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
++++++||+|+++-.... ..+...+++.+.++|||||++++..+
T Consensus 110 ~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 110 GLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp TCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 255789999999732211 12357889999999999999998663
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.59 E-value=8.6e-15 Score=127.78 Aligned_cols=103 Identities=19% Similarity=0.349 Sum_probs=87.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc--------CcCCCCCeEEEEecCCC-CC--C
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--------NTILTSNLALVRADVCR-LP--F 228 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--------~~~~~~~i~~~~~d~~~-lp--~ 228 (328)
.++.+|||||||+|.++..+++.++..+|+|+|+|+.+++.+++++... + ..++.++.+|+.+ ++ +
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~---~~nv~~~~~D~~~~l~~~~ 124 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHG---FQNINVLRGNAMKFLPNFF 124 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCST---TTTEEEEECCTTSCGGGTS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccC---CCcEEEEeccHHHHHHHhc
Confidence 3567999999999999999999988778999999999999999887653 3 4689999999976 66 6
Q ss_pred CCCccceEEeccccccCCCh-------------HHHHHHHHhcccCCcEEEEEEe
Q 020307 229 ASGFVDAVHAGAALHCWPSP-------------SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~~d~-------------~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+.+++|.|++. +++| ..+++++.++|||||++++.+.
T Consensus 125 ~~~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 125 EKGQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp CTTCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred cccccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 67889998843 4555 4799999999999999999763
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-15 Score=137.02 Aligned_cols=111 Identities=18% Similarity=0.209 Sum_probs=87.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcC-------cC-CCCCeEEEEecCCCC-
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDN-------TI-LTSNLALVRADVCRL- 226 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~-------~~-~~~~i~~~~~d~~~l- 226 (328)
+...++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.|++++...+ +. ...++.++.+|+.+.
T Consensus 101 l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~ 180 (336)
T 2b25_A 101 MDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT 180 (336)
T ss_dssp HTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred cCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcc
Confidence 45567889999999999999999997 666799999999999999999887521 00 035899999999876
Q ss_pred -CCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 227 -PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 227 -p~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
++++++||+|++. .+++..+++++.++|||||++++..+..
T Consensus 181 ~~~~~~~fD~V~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 222 (336)
T 2b25_A 181 EDIKSLTFDAVALD-----MLNPHVTLPVFYPHLKHGGVCAVYVVNI 222 (336)
T ss_dssp -------EEEEEEC-----SSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred cccCCCCeeEEEEC-----CCCHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 4567789999984 3566678999999999999999888653
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=124.65 Aligned_cols=127 Identities=7% Similarity=0.019 Sum_probs=103.7
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||||||+|.++..+++.++..+|+++|+++.+++.|++++...++ ..++.+..+|..+...++.+||+|+..
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl--~~~I~v~~gD~l~~~~~~~~~D~Ivia 97 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL--TEQIDVRKGNGLAVIEKKDAIDTIVIA 97 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC--TTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CceEEEEecchhhccCccccccEEEEe
Confidence 357899999999999999999998777899999999999999999998875 557999999987655433469999875
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
+..-. -...+|.+..+.|+++|+|++.... ..+.++++|.+.||.+++.
T Consensus 98 gmGg~--lI~~IL~~~~~~L~~~~~lIlq~~~------------------------~~~~lr~~L~~~Gf~i~~E 146 (244)
T 3gnl_A 98 GMGGT--LIRTILEEGAAKLAGVTKLILQPNI------------------------AAWQLREWSEQNNWLITSE 146 (244)
T ss_dssp EECHH--HHHHHHHHTGGGGTTCCEEEEEESS------------------------CHHHHHHHHHHHTEEEEEE
T ss_pred CCchH--HHHHHHHHHHHHhCCCCEEEEEcCC------------------------ChHHHHHHHHHCCCEEEEE
Confidence 54221 1356788899999999999987621 3568999999999998764
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=124.27 Aligned_cols=112 Identities=9% Similarity=0.173 Sum_probs=91.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCC-C----
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF-A---- 229 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~-~---- 229 (328)
+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++...++ ..++.++.+|+.+ ++. .
T Consensus 54 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~l~~~~~~~~ 131 (221)
T 3u81_A 54 IREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL--QDKVTILNGASQDLIPQLKKKYD 131 (221)
T ss_dssp HHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESCHHHHGGGTTTTSC
T ss_pred HHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC--CCceEEEECCHHHHHHHHHHhcC
Confidence 344577899999999999999999863 366999999999999999999987764 4579999999744 332 2
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
.++||+|++....++..+...+++.+ ++|||||++++.+..
T Consensus 132 ~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 132 VDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp CCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred CCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 26899999998888876666778888 999999999986543
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=124.17 Aligned_cols=107 Identities=15% Similarity=0.097 Sum_probs=89.8
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++.+ +..+|+++|+|+.+++.+++++...+ ..++.+..+|+......+++||+
T Consensus 73 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~fD~ 149 (215)
T 2yxe_A 73 LDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG---YDNVIVIVGDGTLGYEPLAPYDR 149 (215)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT---CTTEEEEESCGGGCCGGGCCEEE
T ss_pred hCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCcccCCCCCCCeeE
Confidence 445578899999999999999999885 44699999999999999999987765 45799999998543223678999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
|++..+++|++ +++.++|||||++++..+..
T Consensus 150 v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 150 IYTTAAGPKIP------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp EEESSBBSSCC------HHHHHTEEEEEEEEEEESSS
T ss_pred EEECCchHHHH------HHHHHHcCCCcEEEEEECCC
Confidence 99999999986 48899999999999988654
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=8.6e-15 Score=132.65 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=91.2
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||||||+|.++..+++.++ ..+|+|+|+|+.+++.|++++...+ ..++.++.+|+.+.+..+++||+
T Consensus 71 l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g---~~~v~~~~~d~~~~~~~~~~fD~ 147 (317)
T 1dl5_A 71 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG---IENVIFVCGDGYYGVPEFSPYDV 147 (317)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGCCGGGCCEEE
T ss_pred cCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCeEEEECChhhccccCCCeEE
Confidence 4456788999999999999999999866 3569999999999999999988765 45699999999875545678999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
|++..+++|++ +++.++|||||++++....
T Consensus 148 Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 148 IFVTVGVDEVP------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp EEECSBBSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred EEEcCCHHHHH------HHHHHhcCCCcEEEEEECC
Confidence 99999999986 5788999999999997644
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=124.87 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=88.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++... .++.++.+|+......+++||+|
T Consensus 66 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~fD~v 138 (231)
T 1vbf_A 66 LDLHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSYY-----NNIKLILGDGTLGYEEEKPYDRV 138 (231)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTC-----SSEEEEESCGGGCCGGGCCEEEE
T ss_pred cCCCCCCEEEEEcCCCCHHHHHHHHHcC--EEEEEeCCHHHHHHHHHHHhhc-----CCeEEEECCcccccccCCCccEE
Confidence 4455788999999999999999999874 9999999999999999987653 28999999997633346789999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
++..+++|++ .++.++|||||++++.++...
T Consensus 139 ~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~~~ 169 (231)
T 1vbf_A 139 VVWATAPTLL------CKPYEQLKEGGIMILPIGVGR 169 (231)
T ss_dssp EESSBBSSCC------HHHHHTEEEEEEEEEEECSSS
T ss_pred EECCcHHHHH------HHHHHHcCCCcEEEEEEcCCC
Confidence 9999999986 368899999999999987543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=128.97 Aligned_cols=108 Identities=19% Similarity=0.262 Sum_probs=93.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhc-C-cCCCCCeEEEEecCCCCCCCCCcc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQD-N-TILTSNLALVRADVCRLPFASGFV 233 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~-~-~~~~~~i~~~~~d~~~lp~~~~~f 233 (328)
+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.|++++... + + ..++.++.+|+.+.++++++|
T Consensus 95 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~--~~~v~~~~~d~~~~~~~~~~~ 172 (280)
T 1i9g_A 95 GDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP--PDNWRLVVSDLADSELPDGSV 172 (280)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC--CTTEEEECSCGGGCCCCTTCE
T ss_pred cCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC--CCcEEEEECchHhcCCCCCce
Confidence 45567889999999999999999985 55679999999999999999998764 2 2 358999999998888778899
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
|+|++ +++++..+++++.++|||||++++.++.
T Consensus 173 D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 173 DRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp EEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred eEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 99998 5678889999999999999999998864
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.9e-15 Score=124.87 Aligned_cols=108 Identities=11% Similarity=0.088 Sum_probs=89.0
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCC-CCeEEEEecCCCCCC--CCCc-cceE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT-SNLALVRADVCRLPF--ASGF-VDAV 236 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~-~~i~~~~~d~~~lp~--~~~~-fD~i 236 (328)
++.+|||+|||+|.++..++..+ ..+|+|+|+|+.+++.|++++...++ . .++.++.+|+.++.. .+++ ||+|
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~fD~I 129 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKC--SSEQAEVINQSSLDFLKQPQNQPHFDVV 129 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTC--CTTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCC--CccceEEEECCHHHHHHhhccCCCCCEE
Confidence 57899999999999999877775 35899999999999999999887652 1 589999999866432 3578 9999
Q ss_pred EeccccccCCChHHHHHHH--HhcccCCcEEEEEEecc
Q 020307 237 HAGAALHCWPSPSNAVAEI--SRILRSGGVFVGTTFLR 272 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~--~r~LkpgG~l~i~~~~~ 272 (328)
++...+ |..+...+++.+ .++|||||++++.....
T Consensus 130 ~~~~~~-~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 130 FLDPPF-HFNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp EECCCS-SSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred EECCCC-CCccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 998874 466777889999 67899999999988653
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=7.8e-15 Score=129.66 Aligned_cols=108 Identities=12% Similarity=0.186 Sum_probs=84.8
Q ss_pred CCCeEEEEcCCcCH----HHHHHHHhCC----CceEEEEeCCHHHHHHHHHHHHh-----------------------cC
Q 020307 161 QGGLLVDVSCGSGL----FSRKFAKSGT----YSGVVALDFSENMLRQCYDFIKQ-----------------------DN 209 (328)
Q Consensus 161 ~~~~vLDiGcG~G~----~~~~l~~~~~----~~~v~g~D~s~~~~~~a~~~~~~-----------------------~~ 209 (328)
++.+|||+|||+|. ++..|++..+ +.+|+|+|+|+.+++.|++..-. .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35699999999998 5555666522 35899999999999999986410 00
Q ss_pred -c----CCCCCeEEEEecCCCCCCC-CCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEE
Q 020307 210 -T----ILTSNLALVRADVCRLPFA-SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGT 268 (328)
Q Consensus 210 -~----~~~~~i~~~~~d~~~lp~~-~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~ 268 (328)
. ....++.|.++|+.+.|++ .++||+|+|.+|++|+.++ .++++++.+.|||||+|++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 0 0013689999999886665 5789999999999999776 68999999999999999983
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.6e-14 Score=120.72 Aligned_cols=133 Identities=11% Similarity=0.102 Sum_probs=105.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCC-CCCCCCCccceEEe
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-RLPFASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~-~lp~~~~~fD~i~~ 238 (328)
.++.+|||||||+|.++..+++.++..+|+++|+++.+++.|++++...++ ..++.+..+|.. .++. ...||+|+.
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl--~~~i~~~~~d~l~~l~~-~~~~D~Ivi 90 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL--KEKIQVRLANGLAAFEE-TDQVSVITI 90 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC--TTTEEEEECSGGGGCCG-GGCCCEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CceEEEEECchhhhccc-CcCCCEEEE
Confidence 357799999999999999999998877899999999999999999998875 457999999984 4432 226999987
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE---
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK--- 315 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~--- 315 (328)
.+.--. -...+|.+....|+|+|++++... ...+.++++|.+.||.+++..
T Consensus 91 aG~Gg~--~i~~Il~~~~~~L~~~~~lVlq~~------------------------~~~~~vr~~L~~~Gf~i~~e~lv~ 144 (225)
T 3kr9_A 91 AGMGGR--LIARILEEGLGKLANVERLILQPN------------------------NREDDLRIWLQDHGFQIVAESILE 144 (225)
T ss_dssp EEECHH--HHHHHHHHTGGGCTTCCEEEEEES------------------------SCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cCCChH--HHHHHHHHHHHHhCCCCEEEEECC------------------------CCHHHHHHHHHHCCCEEEEEEEEE
Confidence 654221 135788999999999999988552 145689999999999988863
Q ss_pred EeCcEE
Q 020307 316 VQQSFI 321 (328)
Q Consensus 316 ~~~~~~ 321 (328)
..+.|+
T Consensus 145 e~~~~Y 150 (225)
T 3kr9_A 145 EAGKFY 150 (225)
T ss_dssp ETTEEE
T ss_pred ECCEEE
Confidence 345553
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.9e-14 Score=126.09 Aligned_cols=138 Identities=17% Similarity=0.110 Sum_probs=99.7
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeC-CHHHHHHHHHHH-----HhcCcC--CCCCeEEEEecCCCCC--C-
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF-SENMLRQCYDFI-----KQDNTI--LTSNLALVRADVCRLP--F- 228 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~-s~~~~~~a~~~~-----~~~~~~--~~~~i~~~~~d~~~lp--~- 228 (328)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+ |+.+++.+++++ ...++. ...++.+...|..+.. +
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 467899999999999999999875 348999999 899999999988 333210 0036778766654321 1
Q ss_pred ---CCCccceEEeccccccCCChHHHHHHHHhccc---C--CcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHH
Q 020307 229 ---ASGFVDAVHAGAALHCWPSPSNAVAEISRILR---S--GGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEI 300 (328)
Q Consensus 229 ---~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~Lk---p--gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 300 (328)
.+++||+|++..+++|.++...+++.+.++|| | ||++++...... +. + .....++
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~----~~----~---------~~~~~~~ 219 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHR----PH----L---------AERDLAF 219 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC-------------------------CTHH
T ss_pred hhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeee----cc----c---------chhHHHH
Confidence 35789999999999999999999999999999 9 998877542211 00 0 0112466
Q ss_pred HHHHHHCC-CeEEEEE
Q 020307 301 EDLCTSCG-LTNYTSK 315 (328)
Q Consensus 301 ~~ll~~~G-f~~v~~~ 315 (328)
.+.+++.| |++.+..
T Consensus 220 ~~~l~~~G~f~v~~~~ 235 (281)
T 3bzb_A 220 FRLVNADGALIAEPWL 235 (281)
T ss_dssp HHHHHHSTTEEEEEEE
T ss_pred HHHHHhcCCEEEEEec
Confidence 77889999 9887753
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.56 E-value=8.5e-15 Score=128.28 Aligned_cols=147 Identities=11% Similarity=0.043 Sum_probs=98.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC---CCC---CCccc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFA---SGFVD 234 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p~~---~~~fD 234 (328)
++.+|||+|||+|.++..++...+..+|+|+|+|+.+++.|++++...++ ..++.++.+|+.+. +++ +++||
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL--SDLIKVVKVPQKTLLMDALKEESEIIYD 142 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCC--CccEEEEEcchhhhhhhhhhcccCCccc
Confidence 56799999999999999988875456999999999999999999987663 34699999997652 344 26899
Q ss_pred eEEeccccccCC--------------Ch-HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHh---hhccCCCCC
Q 020307 235 AVHAGAALHCWP--------------SP-SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER---ILQNYNYLT 296 (328)
Q Consensus 235 ~i~~~~vl~h~~--------------d~-~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 296 (328)
+|+++-..++.. .| ..++.++.++|||||.+.+...... ......... ...+....+
T Consensus 143 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~-----~~~~~l~~~g~~~~~~~~~~~ 217 (254)
T 2h00_A 143 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIH-----DSLQLKKRLRWYSCMLGKKCS 217 (254)
T ss_dssp EEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHH-----HHHHHGGGBSCEEEEESSTTS
T ss_pred EEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHH-----HHHhcccceEEEEECCCChhH
Confidence 999985544332 11 2457889999999998876542100 000000000 001222334
Q ss_pred HHHHHHHHHHCCCeEEEE
Q 020307 297 EEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 297 ~~~l~~ll~~~Gf~~v~~ 314 (328)
.+++.++++++||+.++.
T Consensus 218 ~~~~~~~l~~~Gf~~v~~ 235 (254)
T 2h00_A 218 LAPLKEELRIQGVPKVTY 235 (254)
T ss_dssp HHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHcCCCceEE
Confidence 478999999999987764
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=129.57 Aligned_cols=113 Identities=18% Similarity=0.200 Sum_probs=91.0
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||+|||+|..+..+++.. ...+|+|+|+|+.+++.+++++...+ ..++.++++|+..++..+++||+
T Consensus 114 l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g---~~~v~~~~~D~~~~~~~~~~fD~ 190 (315)
T 1ixk_A 114 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG---VLNVILFHSSSLHIGELNVEFDK 190 (315)
T ss_dssp HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT---CCSEEEESSCGGGGGGGCCCEEE
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC---CCeEEEEECChhhcccccccCCE
Confidence 556678899999999999999999874 34689999999999999999998776 45799999999887655678999
Q ss_pred EEec------cccccCCCh----------------HHHHHHHHhcccCCcEEEEEEecc
Q 020307 236 VHAG------AALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 236 i~~~------~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
|++. .++.+.++. ..+|+++.++|||||++++++...
T Consensus 191 Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 191 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 9984 334443321 478999999999999999988543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=132.92 Aligned_cols=107 Identities=19% Similarity=0.263 Sum_probs=91.3
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|||+|||+|.++..+++.++..+|+|+|+|+.+++.+++++...+ ..+.++.+|+...+ +++||+|++
T Consensus 194 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~----~~~~~~~~d~~~~~--~~~fD~Iv~ 267 (343)
T 2pjd_A 194 PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANG----VEGEVFASNVFSEV--KGRFDMIIS 267 (343)
T ss_dssp TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTT----CCCEEEECSTTTTC--CSCEEEEEE
T ss_pred cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCEEEEccccccc--cCCeeEEEE
Confidence 345679999999999999999999877799999999999999999988754 24677889987654 678999999
Q ss_pred cccccc-----CCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 239 GAALHC-----WPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 239 ~~vl~h-----~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+.++|+ ..+...+++++.++|||||.+++..+.
T Consensus 268 ~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 268 NPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp CCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred CCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 998875 334578999999999999999998864
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=125.68 Aligned_cols=110 Identities=12% Similarity=0.183 Sum_probs=92.0
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C-CCCCccc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-FASGFVD 234 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~~~~~fD 234 (328)
+...++.+|||+|||+|..+..+++..+..+|+++|+++.+++.|++++...++ ..++.++.+|+.+. + ..+++||
T Consensus 67 ~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~fD 144 (232)
T 3ntv_A 67 IRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF--ENQVRIIEGNALEQFENVNDKVYD 144 (232)
T ss_dssp HHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC--TTTEEEEESCGGGCHHHHTTSCEE
T ss_pred HhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECCHHHHHHhhccCCcc
Confidence 344578899999999999999999976677999999999999999999988764 45899999999664 3 3367999
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+|++... ..+...+++++.++|||||++++....
T Consensus 145 ~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~d~~~ 178 (232)
T 3ntv_A 145 MIFIDAA---KAQSKKFFEIYTPLLKHQGLVITDNVL 178 (232)
T ss_dssp EEEEETT---SSSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred EEEEcCc---HHHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence 9997654 445678999999999999999885543
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-14 Score=116.60 Aligned_cols=100 Identities=21% Similarity=0.251 Sum_probs=86.2
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------CC
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA 229 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~ 229 (328)
..++.+|||+|||+|.++..+++. ++..+++|+|+++ +++ ..++.++.+|+.+.+ ++
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~-------------~~~~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP-------------IVGVDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC-------------CTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc-------------cCcEEEEEcccccchhhhhhhccCC
Confidence 346789999999999999999988 5567999999998 642 347899999998876 67
Q ss_pred CCccceEEeccccccCCCh-----------HHHHHHHHhcccCCcEEEEEEecc
Q 020307 230 SGFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~-----------~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
+++||+|++..++++..++ ..+++++.++|||||.+++.++..
T Consensus 86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 7899999999999888877 688999999999999999988654
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=133.35 Aligned_cols=109 Identities=18% Similarity=0.240 Sum_probs=92.2
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
...++.+|||||||+|.++..+++.+ ..+|+|+|+| .+++.|+++++..++ ..++.++.+|+.+++++ ++||+|+
T Consensus 60 ~~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~-~~~D~Iv 134 (376)
T 3r0q_C 60 HHFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMADHARALVKANNL--DHIVEVIEGSVEDISLP-EKVDVII 134 (376)
T ss_dssp TTTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESS-TTHHHHHHHHHHTTC--TTTEEEEESCGGGCCCS-SCEEEEE
T ss_pred ccCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccH-HHHHHHHHHHHHcCC--CCeEEEEECchhhcCcC-CcceEEE
Confidence 34578899999999999999999986 3489999999 999999999988764 46699999999998876 7899999
Q ss_pred eccccccC---CChHHHHHHHHhcccCCcEEEEEEec
Q 020307 238 AGAALHCW---PSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 238 ~~~vl~h~---~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+..+.+++ .++..+++++.++|||||++++....
T Consensus 135 ~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 135 SEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp ECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred EcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence 96644444 56788999999999999999876544
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-14 Score=129.78 Aligned_cols=106 Identities=19% Similarity=0.311 Sum_probs=90.7
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
...++.+|||+|||+|.++..+++.+ ..+|+|+|+| .+++.|++++...++ ..++.++.+|+.++++++++||+|+
T Consensus 35 ~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~~vD~s-~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~D~Iv 110 (328)
T 1g6q_1 35 DLFKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMS-SIIEMAKELVELNGF--SDKITLLRGKLEDVHLPFPKVDIII 110 (328)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESS-THHHHHHHHHHHTTC--TTTEEEEESCTTTSCCSSSCEEEEE
T ss_pred hhcCCCEEEEecCccHHHHHHHHHCC-CCEEEEEChH-HHHHHHHHHHHHcCC--CCCEEEEECchhhccCCCCcccEEE
Confidence 34567899999999999999999885 4589999999 599999999887664 4679999999999888778999999
Q ss_pred ecc---ccccCCChHHHHHHHHhcccCCcEEEE
Q 020307 238 AGA---ALHCWPSPSNAVAEISRILRSGGVFVG 267 (328)
Q Consensus 238 ~~~---vl~h~~d~~~~l~~~~r~LkpgG~l~i 267 (328)
+.. .+.+..++..+++++.++|||||+++.
T Consensus 111 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 874 455666788999999999999999974
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-14 Score=121.51 Aligned_cols=107 Identities=10% Similarity=0.077 Sum_probs=89.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCCCCCccceEEec
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~i~~~ 239 (328)
++.+|||+|||+|.++..++..+ ..+|+|+|+|+.+++.|++++...+ ..++.++++|+.+ ++...++||+|++.
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~---~~~v~~~~~D~~~~~~~~~~~fD~V~~~ 129 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLK---AGNARVVNSNAMSFLAQKGTPHNIVFVD 129 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTT---CCSEEEECSCHHHHHSSCCCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHHHhhcCCCCCEEEEC
Confidence 57899999999999999887775 2489999999999999999988765 3589999999866 45556789999998
Q ss_pred cccccCCChHHHHHHHHh--cccCCcEEEEEEecc
Q 020307 240 AALHCWPSPSNAVAEISR--ILRSGGVFVGTTFLR 272 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r--~LkpgG~l~i~~~~~ 272 (328)
.. .|..+...+++.+.+ +|||||++++.....
T Consensus 130 ~p-~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 130 PP-FRRGLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp CS-SSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred CC-CCCCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 76 346677888888866 599999999988653
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.55 E-value=7.7e-15 Score=121.23 Aligned_cols=110 Identities=17% Similarity=0.205 Sum_probs=88.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCCCCCccceEEe
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~i~~ 238 (328)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++...++ ..++.++.+|+.+ ++..+++||+|++
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~i~~ 106 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSRG-MSAAVLVEKNRKAQAIIQDNIIMTKA--ENRFTLLKMEAERAIDCLTGRFDLVFL 106 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHHTTTC--GGGEEEECSCHHHHHHHBCSCEEEEEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECcHHHhHHhhcCCCCEEEE
Confidence 467899999999999999999884 45999999999999999999887653 3479999999876 3434567999999
Q ss_pred ccccccCCChHHHHHHHH--hcccCCcEEEEEEeccC
Q 020307 239 GAALHCWPSPSNAVAEIS--RILRSGGVFVGTTFLRY 273 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~--r~LkpgG~l~i~~~~~~ 273 (328)
...++ ..+....++.+. ++|||||++++......
T Consensus 107 ~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 107 DPPYA-KETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp CCSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCCCC-cchHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 86643 234456777777 99999999999886543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-14 Score=124.10 Aligned_cols=106 Identities=14% Similarity=0.144 Sum_probs=88.8
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCC-Cccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS-GFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~-~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++.++ .+|+++|+++.+++.|++++...+ ..++.+..+|+ ..++++ ..||+
T Consensus 87 l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~-~~~~~~~~~fD~ 161 (235)
T 1jg1_A 87 ANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAG---VKNVHVILGDG-SKGFPPKAPYDV 161 (235)
T ss_dssp HTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCG-GGCCGGGCCEEE
T ss_pred cCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEECCc-ccCCCCCCCccE
Confidence 4455788999999999999999999874 699999999999999999988765 45699999997 334444 35999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
|++..++++++ +++.++|||||++++..+...
T Consensus 162 Ii~~~~~~~~~------~~~~~~L~pgG~lvi~~~~~~ 193 (235)
T 1jg1_A 162 IIVTAGAPKIP------EPLIEQLKIGGKLIIPVGSYH 193 (235)
T ss_dssp EEECSBBSSCC------HHHHHTEEEEEEEEEEECSSS
T ss_pred EEECCcHHHHH------HHHHHhcCCCcEEEEEEecCC
Confidence 99999999886 378899999999999887643
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.54 E-value=7.3e-15 Score=120.31 Aligned_cols=105 Identities=15% Similarity=0.185 Sum_probs=87.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C-C--CCCccceE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-F--ASGFVDAV 236 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~--~~~~fD~i 236 (328)
++.+|||+|||+|.++..+++.++ +++|+|+|+.+++.+++++...+ . ++.++.+|+.+. + . ..++||+|
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~---~-~~~~~~~d~~~~~~~~~~~~~~~D~i 114 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRTG---L-GARVVALPVEVFLPEAKAQGERFTVA 114 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHHT---C-CCEEECSCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHcC---C-ceEEEeccHHHHHHhhhccCCceEEE
Confidence 678999999999999999999987 69999999999999999988754 3 789999998663 2 1 12479999
Q ss_pred EeccccccCCChHHHHHHHH--hcccCCcEEEEEEeccC
Q 020307 237 HAGAALHCWPSPSNAVAEIS--RILRSGGVFVGTTFLRY 273 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~--r~LkpgG~l~i~~~~~~ 273 (328)
++..+++ .+....++.+. ++|||||++++.++...
T Consensus 115 ~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 115 FMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp EECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred EECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 9987765 56667777777 99999999999887654
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=120.51 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=89.7
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----CCCCccce
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA 235 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~ 235 (328)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++...++ ..++.++.+|+.+.. +.+++||+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~fD~ 119 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAITKE--PEKFEVRKMDANRALEQFYEEKLQFDL 119 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCC--CcceEEEECcHHHHHHHHHhcCCCCCE
Confidence 367899999999999999888864 45899999999999999999887653 357999999986632 23678999
Q ss_pred EEeccccccCCChHHHHHHH--HhcccCCcEEEEEEeccC
Q 020307 236 VHAGAALHCWPSPSNAVAEI--SRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~--~r~LkpgG~l~i~~~~~~ 273 (328)
|++...++ ..+....++.+ .++|||||++++..+...
T Consensus 120 i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 120 VLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp EEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred EEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 99987743 45677778888 899999999999887643
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.1e-15 Score=129.76 Aligned_cols=142 Identities=13% Similarity=0.179 Sum_probs=95.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEE-EecCCCCC---CCCCccceE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV-RADVCRLP---FASGFVDAV 236 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~-~~d~~~lp---~~~~~fD~i 236 (328)
++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.|++.+.+. .+++... ..++..++ ++..+||+|
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~g-a~~V~aVDvs~~mL~~a~r~--------~~rv~~~~~~ni~~l~~~~l~~~~fD~v 155 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNG-AKLVYAVDVGTNQLVWKLRQ--------DDRVRSMEQYNFRYAEPVDFTEGLPSFA 155 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSSSCSCHHHHT--------CTTEEEECSCCGGGCCGGGCTTCCCSEE
T ss_pred cccEEEecCCCccHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh--------CcccceecccCceecchhhCCCCCCCEE
Confidence 57799999999999999999885 35899999999999885442 3344332 23443332 234569999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHh-hhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER-ILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
++..++++ ...+|.++.++|||||.+++..-.........+.+ ... .....+....+++.++++++||.+....
T Consensus 156 ~~d~sf~s---l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~--~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~ 230 (291)
T 3hp7_A 156 SIDVSFIS---LNLILPALAKILVDGGQVVALVKPQFEAGREQIGK--NGIVRESSIHEKVLETVTAFAVDYGFSVKGLD 230 (291)
T ss_dssp EECCSSSC---GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC---CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred EEEeeHhh---HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCC--CCccCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 99887764 47889999999999999988742111000001000 000 0011223467889999999999988754
Q ss_pred E
Q 020307 316 V 316 (328)
Q Consensus 316 ~ 316 (328)
.
T Consensus 231 ~ 231 (291)
T 3hp7_A 231 F 231 (291)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.5e-14 Score=128.96 Aligned_cols=149 Identities=15% Similarity=0.162 Sum_probs=107.6
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|+++++..++ ..++.++.+|+.+++++ ++||+|
T Consensus 46 l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~l--~~~v~~~~~d~~~~~~~-~~~D~I 120 (348)
T 2y1w_A 46 HTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSNNL--TDRIVVIPGKVEEVSLP-EQVDII 120 (348)
T ss_dssp GGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-HHHHHHHHHHHTTC--TTTEEEEESCTTTCCCS-SCEEEE
T ss_pred cccCCcCEEEEcCCCccHHHHHHHhCC-CCEEEEECCHH-HHHHHHHHHHHcCC--CCcEEEEEcchhhCCCC-CceeEE
Confidence 444578899999999999999999874 45899999996 88999998887664 46899999999988765 579999
Q ss_pred EeccccccCCC--hHHHHHHHHhcccCCcEEEEEEeccCCC-C--cchhhHHHHHh---hhccCCCCCHHHHHHHHHHCC
Q 020307 237 HAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTS-S--TSLTGRVLRER---ILQNYNYLTEEEIEDLCTSCG 308 (328)
Q Consensus 237 ~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~-~--~~~~~~~~~~~---~~~~~~~~~~~~l~~ll~~~G 308 (328)
++..+++|+.+ ....+.++.++|||||++++...+.... . .....+.+... .......++...+..++.+.|
T Consensus 121 vs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~i~~~~~~~~~~~~~~~w~~~~~~g~d~~~l~~~~~~~~ 200 (348)
T 2y1w_A 121 ISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEY 200 (348)
T ss_dssp EECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCEEEEEEEEECCHHHHHHHHHHHGGGCCSCBTTBCCGGGHHHHHHHH
T ss_pred EEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEecCcEEEEEecchHHhhhhccccCcccccccCcccHHHhhhHHHhhh
Confidence 99999888854 4578889999999999998755432210 0 01111111111 112334555667777777776
Q ss_pred Ce
Q 020307 309 LT 310 (328)
Q Consensus 309 f~ 310 (328)
|.
T Consensus 201 f~ 202 (348)
T 2y1w_A 201 FR 202 (348)
T ss_dssp HT
T ss_pred cc
Confidence 64
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8e-15 Score=142.99 Aligned_cols=108 Identities=16% Similarity=0.231 Sum_probs=92.8
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC--CCCCCccceEEe
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHA 238 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~i~~ 238 (328)
++.+|||||||.|.++..|++.|. +|+|+|+++.+++.|+..+.+.+ ..++.+.+++++++ ++.+++||+|+|
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga--~V~giD~~~~~i~~a~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~v~~ 140 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGA--TIVGIDFQQENINVCRALAEENP---DFAAEFRVGRIEEVIAALEEGEFDLAIG 140 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTST---TSEEEEEECCHHHHHHHCCTTSCSEEEE
T ss_pred CCCeEEEECCCCcHHHHHHHhCCC--EEEEECCCHHHHHHHHHHHHhcC---CCceEEEECCHHHHhhhccCCCccEEEE
Confidence 567999999999999999999987 99999999999999999988764 35799999999887 456789999999
Q ss_pred ccccccCCChH--HHHHHHHhcccCCcEEEEEEeccC
Q 020307 239 GAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 239 ~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
..+|||++||. ..+..+.+.|+++|..++......
T Consensus 141 ~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~ 177 (569)
T 4azs_A 141 LSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVK 177 (569)
T ss_dssp ESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCT
T ss_pred CcchhcCCCHHHHHHHHHHHHHhccccceeeEEeccc
Confidence 99999999986 335678888999988887775543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-14 Score=123.47 Aligned_cols=110 Identities=17% Similarity=0.227 Sum_probs=93.0
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-CCC--CCcc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFA--SGFV 233 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~--~~~f 233 (328)
+...++.+|||+|||+|.++..+++..+..+|+++|+++.+++.|++++...+. ..++.++.+|+... +.. +++|
T Consensus 50 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~f 127 (233)
T 2gpy_A 50 LKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL--ESRIELLFGDALQLGEKLELYPLF 127 (233)
T ss_dssp HHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC--TTTEEEECSCGGGSHHHHTTSCCE
T ss_pred HhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECCHHHHHHhcccCCCc
Confidence 445578899999999999999999987667999999999999999999887663 45799999998764 432 5789
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
|+|++....+ +...+++++.++|||||++++.+..
T Consensus 128 D~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 128 DVLFIDAAKG---QYRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp EEEEEEGGGS---CHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred cEEEECCCHH---HHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 9999987754 6789999999999999999997543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-14 Score=124.57 Aligned_cols=110 Identities=13% Similarity=0.164 Sum_probs=90.7
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCCC--CCcc
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFA--SGFV 233 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~--~~~f 233 (328)
...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...++ ..++.++.+|+.+ ++.. .++|
T Consensus 60 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~~l~~~~~~~~f 137 (248)
T 3tfw_A 60 RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV--DQRVTLREGPALQSLESLGECPAF 137 (248)
T ss_dssp HHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHHTCCSCCCC
T ss_pred hhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHhcCCCCCe
Confidence 445788999999999999999999865 67999999999999999999988764 4589999999865 3322 3489
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
|+|++... ..+...+++++.++|||||++++.+...
T Consensus 138 D~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 138 DLIFIDAD---KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp SEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred EEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 99998653 3355788999999999999999876543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-15 Score=131.33 Aligned_cols=143 Identities=16% Similarity=0.114 Sum_probs=87.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE-ecCCCCCCCCCccceEEec
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~~lp~~~~~fD~i~~~ 239 (328)
++.+|||||||+|.++..+++.+ ..+|+|+|+|+.|++.++++..........++.+.. .|+.. ..||.+.+.
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~~~D 110 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ-----GRPSFTSID 110 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS-----CCCSEEEEC
T ss_pred CCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc-----CCCCEEEEE
Confidence 56799999999999999999985 248999999999999887642210000001122222 22221 123444444
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHh-h--hccCCCCCHHHHHHHHHHCCCeEEEEEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER-I--LQNYNYLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
.++.++ ..+++++.++|||||++++..... .......+... . ..+.+..+.+++.++++++||+++....
T Consensus 111 ~v~~~l---~~~l~~i~rvLkpgG~lv~~~~p~----~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~ 183 (232)
T 3opn_A 111 VSFISL---DLILPPLYEILEKNGEVAALIKPQ----FEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTF 183 (232)
T ss_dssp CSSSCG---GGTHHHHHHHSCTTCEEEEEECHH----HHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred EEhhhH---HHHHHHHHHhccCCCEEEEEECcc----cccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEE
Confidence 333332 678999999999999999864110 00000111000 0 0112234788999999999999887543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-13 Score=126.40 Aligned_cols=131 Identities=21% Similarity=0.125 Sum_probs=104.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
....++.+|||+|||+|.++..++..+ +..+++|+|+|+.+++.|++++...++ .++.+.++|+.+++.+.+.||+
T Consensus 199 ~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~---~~i~~~~~D~~~~~~~~~~~D~ 275 (354)
T 3tma_A 199 ADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL---SWIRFLRADARHLPRFFPEVDR 275 (354)
T ss_dssp TTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC---TTCEEEECCGGGGGGTCCCCSE
T ss_pred hCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC---CceEEEeCChhhCccccCCCCE
Confidence 344577899999999999999999976 667999999999999999999998764 3899999999998877778999
Q ss_pred EEeccccccCCC--------hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHC
Q 020307 236 VHAGAALHCWPS--------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 236 i~~~~vl~h~~d--------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 307 (328)
|+++-....... ...+++++.++|||||++++.+++ .+.++++++ .
T Consensus 276 Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~-------------------------~~~~~~~~~-~ 329 (354)
T 3tma_A 276 ILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR-------------------------PALLKRALP-P 329 (354)
T ss_dssp EEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC-------------------------HHHHHHHCC-T
T ss_pred EEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC-------------------------HHHHHHHhh-c
Confidence 999644322111 257899999999999999998853 234555666 8
Q ss_pred CCeEEEEEE
Q 020307 308 GLTNYTSKV 316 (328)
Q Consensus 308 Gf~~v~~~~ 316 (328)
||+..+...
T Consensus 330 g~~~~~~~~ 338 (354)
T 3tma_A 330 GFALRHARV 338 (354)
T ss_dssp TEEEEEEEE
T ss_pred CcEEEEEEE
Confidence 998776543
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-14 Score=132.42 Aligned_cols=116 Identities=12% Similarity=0.041 Sum_probs=91.1
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHH-------HHHHHhcCcCCCCCeEEEEecCCCC-
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC-------YDFIKQDNTILTSNLALVRADVCRL- 226 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a-------~~~~~~~~~~~~~~i~~~~~d~~~l- 226 (328)
+.+...++.+|||+|||+|.++..+++..+..+|+|+|+++.+++.| ++++...++. ..++.++.+|....
T Consensus 236 ~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~-~~nV~~i~gD~~~~~ 314 (433)
T 1u2z_A 236 QQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR-LNNVEFSLKKSFVDN 314 (433)
T ss_dssp HHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC-CCCEEEEESSCSTTC
T ss_pred HhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC-CCceEEEEcCccccc
Confidence 33455678899999999999999999975455899999999999988 7777765420 25899998764322
Q ss_pred -CC--CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 227 -PF--ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 227 -p~--~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
++ ..++||+|+++.++ +.+++...|+++.++|||||++++.++..
T Consensus 315 ~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~f~ 362 (433)
T 1u2z_A 315 NRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKSLR 362 (433)
T ss_dssp HHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred cccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeeccC
Confidence 22 24689999998776 45677888999999999999999986544
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-14 Score=122.58 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=89.6
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C-CC---CC
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-FA---SG 231 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~~---~~ 231 (328)
...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...++ ..++.++.+|+.+. + +. .+
T Consensus 55 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~ 132 (223)
T 3duw_A 55 QIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL--NDRVEVRTGLALDSLQQIENEKYE 132 (223)
T ss_dssp HHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHHHHHHTTCC
T ss_pred HhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHhcCCC
Confidence 445788999999999999999999865 57999999999999999999987764 45699999998543 2 11 26
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
+||+|++..... +...+++++.++|||||++++.+...
T Consensus 133 ~fD~v~~d~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~~ 170 (223)
T 3duw_A 133 PFDFIFIDADKQ---NNPAYFEWALKLSRPGTVIIGDNVVR 170 (223)
T ss_dssp CCSEEEECSCGG---GHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred CcCEEEEcCCcH---HHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 799999876533 45688999999999999888876543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-13 Score=119.76 Aligned_cols=106 Identities=13% Similarity=0.138 Sum_probs=90.8
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++. ..+++++|+++.+++.|+++....++ ..++.+..+|+.+..+++++||+|
T Consensus 87 ~~~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~D~v 162 (248)
T 2yvl_A 87 LNLNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNL--GKNVKFFNVDFKDAEVPEGIFHAA 162 (248)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTC--CTTEEEECSCTTTSCCCTTCBSEE
T ss_pred cCCCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCC--CCcEEEEEcChhhcccCCCcccEE
Confidence 34457889999999999999999998 44999999999999999999877653 368999999998754356789999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++ +.+++..+++++.++|||||++++..+.
T Consensus 163 ~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 163 FV-----DVREPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp EE-----CSSCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred EE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 97 4568889999999999999999998864
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=118.19 Aligned_cols=107 Identities=22% Similarity=0.322 Sum_probs=88.5
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCc--CCCCCeEEEEecCCCCCCCCCccce
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~--~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
..++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.+++++...+. ....++.++.+|+...+..+++||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 456789999999999999999987 4556999999999999999998876421 0024799999999766555778999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
|++..+++++ ++++.++|||||++++....
T Consensus 155 i~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 155 IHVGAAAPVV------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEECSBBSSC------CHHHHHTEEEEEEEEEEESC
T ss_pred EEECCchHHH------HHHHHHhcCCCcEEEEEEec
Confidence 9999998876 36889999999999998754
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.3e-14 Score=118.40 Aligned_cols=106 Identities=16% Similarity=0.184 Sum_probs=88.1
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-CCCCCccceE
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAV 236 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~i 236 (328)
..++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.|++++...++ ..++.++.+|+.+. +..++ ||+|
T Consensus 54 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~-fD~v 130 (210)
T 3c3p_A 54 IKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL--IDRVELQVGDPLGIAAGQRD-IDIL 130 (210)
T ss_dssp HHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG--GGGEEEEESCHHHHHTTCCS-EEEE
T ss_pred hhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC--CceEEEEEecHHHHhccCCC-CCEE
Confidence 34678999999999999999998855 67999999999999999999887654 45799999998653 44446 9999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
++... ..+...+++++.++|||||++++.+.
T Consensus 131 ~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 131 FMDCD---VFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp EEETT---TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred EEcCC---hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 98743 35678999999999999999998654
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.5e-14 Score=120.69 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=86.5
Q ss_pred CCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCC-CCeEEEEecCCCC-C-CCCCccceEE
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILT-SNLALVRADVCRL-P-FASGFVDAVH 237 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~-~~i~~~~~d~~~l-p-~~~~~fD~i~ 237 (328)
+.+|||||||+|..+..+++.. ++.+|+++|+++.+++.|+++++..++ . .++.++.+|+.+. + +.+++||+|+
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--~~~~i~~~~gda~~~l~~~~~~~fD~V~ 134 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGY--SPSRVRFLLSRPLDVMSRLANDSYQLVF 134 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTC--CGGGEEEECSCHHHHGGGSCTTCEEEEE
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CcCcEEEEEcCHHHHHHHhcCCCcCeEE
Confidence 3499999999999999999874 367999999999999999999988764 4 5899999998553 2 3368999999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+.... .+...+++++.++|||||++++.+.
T Consensus 135 ~d~~~---~~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 135 GQVSP---MDLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp ECCCT---TTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred EcCcH---HHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 87543 3567789999999999999999553
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-14 Score=123.13 Aligned_cols=124 Identities=13% Similarity=0.066 Sum_probs=95.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHh----CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC---CCCC-C
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFAS-G 231 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p~~~-~ 231 (328)
.++.+|||||||+|..+..+++. ++..+|+|+|+|+.+++.|+.. ..++.++++|+.+. +... .
T Consensus 80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~--------~~~v~~~~gD~~~~~~l~~~~~~ 151 (236)
T 2bm8_A 80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD--------MENITLHQGDCSDLTTFEHLREM 151 (236)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG--------CTTEEEEECCSSCSGGGGGGSSS
T ss_pred cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc--------CCceEEEECcchhHHHHHhhccC
Confidence 45679999999999999999987 5667999999999999888621 46899999999874 5433 4
Q ss_pred ccceEEeccccccCCChHHHHHHHHh-cccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHC--C
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISR-ILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC--G 308 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r-~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--G 308 (328)
+||+|++... | .+...+++++.+ +|||||++++.+.. +. .. .++.+.+.+++++. +
T Consensus 152 ~fD~I~~d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~~------~~-----~~-------~~~~~~~~~~l~~~~~~ 210 (236)
T 2bm8_A 152 AHPLIFIDNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDMI------PY-----WY-------RYAPQLFSEYLGAFRDV 210 (236)
T ss_dssp CSSEEEEESS--C-SSHHHHHHHHHHHTCCTTCEEEECSCH------HH-----HH-------HHCHHHHHHHHHTTTTT
T ss_pred CCCEEEECCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeCc------cc-----cc-------ccCHHHHHHHHHhCccc
Confidence 7999998765 4 377889999997 99999999997641 11 00 02344788888888 5
Q ss_pred CeEE
Q 020307 309 LTNY 312 (328)
Q Consensus 309 f~~v 312 (328)
|+..
T Consensus 211 f~~~ 214 (236)
T 2bm8_A 211 LSMD 214 (236)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 6654
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.49 E-value=9.4e-14 Score=126.39 Aligned_cols=108 Identities=11% Similarity=0.032 Sum_probs=86.8
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCC-CeEEEEecCCCCCC----CCCccc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NLALVRADVCRLPF----ASGFVD 234 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~-~i~~~~~d~~~lp~----~~~~fD 234 (328)
.++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.|++++...++ .. ++.++++|+.++.. ..++||
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl--~~~~v~~i~~D~~~~l~~~~~~~~~fD 227 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGL--EQAPIRWICEDAMKFIQREERRGSTYD 227 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTC--TTSCEEEECSCHHHHHHHHHHHTCCBS
T ss_pred CCCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCC--CccceEEEECcHHHHHHHHHhcCCCce
Confidence 3567999999999999999999876 999999999999999999887663 22 49999999866431 146899
Q ss_pred eEEecc----------ccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 235 AVHAGA----------ALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 235 ~i~~~~----------vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+|++.- ++++..+...+++++.++|||||++++....
T Consensus 228 ~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 228 IILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp EEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred EEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 999842 2233345678899999999999998887754
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=117.68 Aligned_cols=107 Identities=21% Similarity=0.305 Sum_probs=89.0
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhC-----CCceEEEEeCCHHHHHHHHHHHHhcCc--CCCCCeEEEEecCCCCC----
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRADVCRLP---- 227 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~g~D~s~~~~~~a~~~~~~~~~--~~~~~i~~~~~d~~~lp---- 227 (328)
..++.+|||+|||+|.++..+++.. +..+|+|+|+++.+++.|++++...+. ....++.++.+|+....
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4567899999999999999999875 456999999999999999999876531 00247999999997754
Q ss_pred CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 228 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
...++||+|++..+++|+ ++++.++|||||++++..+.
T Consensus 158 ~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEcc
Confidence 456789999999999886 47889999999999998864
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=121.56 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=92.0
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC----CCC
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASG 231 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~ 231 (328)
+...++.+|||+|||+|..+..+++..++ .+|+|+|+++.+++.+++++...+ ..++.++.+|+..++. ..+
T Consensus 79 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g---~~~v~~~~~D~~~~~~~~~~~~~ 155 (274)
T 3ajd_A 79 LNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMG---VLNTIIINADMRKYKDYLLKNEI 155 (274)
T ss_dssp HCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCHHHHHHHHHHTTC
T ss_pred hCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhC---CCcEEEEeCChHhcchhhhhccc
Confidence 55567889999999999999999986443 699999999999999999998876 4589999999977654 257
Q ss_pred ccceEEec------cccc------------cCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 232 FVDAVHAG------AALH------------CWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 232 ~fD~i~~~------~vl~------------h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
+||+|++. .++. +......+|+++.++|||||++++++....
T Consensus 156 ~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~ 215 (274)
T 3ajd_A 156 FFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSME 215 (274)
T ss_dssp CEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred cCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 89999986 2222 123457899999999999999999886554
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.4e-14 Score=122.93 Aligned_cols=108 Identities=19% Similarity=0.127 Sum_probs=84.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHh--CCCceEEEEeCCHHHHHHHHHHHHhc---CcCCCCC--------------------
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQD---NTILTSN-------------------- 215 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~g~D~s~~~~~~a~~~~~~~---~~~~~~~-------------------- 215 (328)
++.+|||+|||+|.++..+++. .+..+|+|+|+|+.+++.|++++... ++ ..+
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 128 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL--TARELERREQSERFGKPSYLEAA 128 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH--HHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccc--cccchhhhhhhhhcccccchhhh
Confidence 5679999999999999999987 44568999999999999999877643 21 011
Q ss_pred -----eE-------------EEEecCCCCCC-----CCCccceEEeccccccCCC---------hHHHHHHHHhcccCCc
Q 020307 216 -----LA-------------LVRADVCRLPF-----ASGFVDAVHAGAALHCWPS---------PSNAVAEISRILRSGG 263 (328)
Q Consensus 216 -----i~-------------~~~~d~~~lp~-----~~~~fD~i~~~~vl~h~~d---------~~~~l~~~~r~LkpgG 263 (328)
+. +.++|+.+... ...+||+|+++..+.+..+ ...+++++.++|||||
T Consensus 129 ~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 208 (250)
T 1o9g_A 129 QAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHA 208 (250)
T ss_dssp HHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTC
T ss_pred hhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCc
Confidence 55 99999876421 3458999999876655543 2488999999999999
Q ss_pred EEEEEEe
Q 020307 264 VFVGTTF 270 (328)
Q Consensus 264 ~l~i~~~ 270 (328)
+++++..
T Consensus 209 ~l~~~~~ 215 (250)
T 1o9g_A 209 VIAVTDR 215 (250)
T ss_dssp EEEEEES
T ss_pred EEEEeCc
Confidence 9999543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.47 E-value=5.4e-14 Score=120.72 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=89.5
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C-CCC----
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-FAS---- 230 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~~~---- 230 (328)
...++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.|++++...++ ..++.++.+|+.+. + +..
T Consensus 61 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~ 138 (225)
T 3tr6_A 61 KLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL--SDKIGLRLSPAKDTLAELIHAGQA 138 (225)
T ss_dssp HHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHHHHHTTTCT
T ss_pred HhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCceEEEeCCHHHHHHHhhhccCC
Confidence 445778999999999999999999854 67999999999999999999988764 45699999998543 2 111
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
++||+|++... ..+...+++++.++|||||++++.+...
T Consensus 139 ~~fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 139 WQYDLIYIDAD---KANTDLYYEESLKLLREGGLIAVDNVLR 177 (225)
T ss_dssp TCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred CCccEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 78999997554 2356789999999999999999977543
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.7e-13 Score=125.79 Aligned_cols=114 Identities=18% Similarity=0.258 Sum_probs=95.0
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGF 232 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~ 232 (328)
.+...++.+|||+|||+|..+..+++..++ .+++++|+++.+++.+++++...+ ..++.++.+|+..++ +++++
T Consensus 254 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g---~~~v~~~~~D~~~~~~~~~~~~ 330 (450)
T 2yxl_A 254 VLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG---IKIVKPLVKDARKAPEIIGEEV 330 (450)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTT---CCSEEEECSCTTCCSSSSCSSC
T ss_pred hcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC---CCcEEEEEcChhhcchhhccCC
Confidence 355667889999999999999999987544 699999999999999999998766 457999999998876 55578
Q ss_pred cceEEe------ccccccCCCh----------------HHHHHHHHhcccCCcEEEEEEecc
Q 020307 233 VDAVHA------GAALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 233 fD~i~~------~~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
||+|++ ..++.+.++. ..+|+++.++|||||++++++...
T Consensus 331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999996 4556665554 568999999999999999988654
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.3e-13 Score=122.18 Aligned_cols=133 Identities=16% Similarity=0.156 Sum_probs=104.3
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|||+|||+|.++..++..++..+++|+|+|+.+++.|++++...++ ..++.+.++|+.++++++++||+|++
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl--~~~i~~~~~D~~~~~~~~~~fD~Ii~ 292 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGV--LDKIKFIQGDATQLSQYVDSVDFAIS 292 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTC--GGGCEEEECCGGGGGGTCSCEEEEEE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCC--CCceEEEECChhhCCcccCCcCEEEE
Confidence 4567899999999999999999988666899999999999999999988764 36899999999999887889999999
Q ss_pred ccccccC-------CCh-HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCe
Q 020307 239 GAALHCW-------PSP-SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 239 ~~vl~h~-------~d~-~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
+-..... .+. ..+++++.++| ||.+++.+. +.+.+++.+++.||+
T Consensus 293 npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~-------------------------~~~~~~~~~~~~G~~ 345 (373)
T 3tm4_A 293 NLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT-------------------------EKKAIEEAIAENGFE 345 (373)
T ss_dssp ECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES-------------------------CHHHHHHHHHHTTEE
T ss_pred CCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC-------------------------CHHHHHHHHHHcCCE
Confidence 6543221 111 56788889988 555555542 346788899999998
Q ss_pred EEEE--EEeCcE
Q 020307 311 NYTS--KVQQSF 320 (328)
Q Consensus 311 ~v~~--~~~~~~ 320 (328)
..+. ...+..
T Consensus 346 ~~~~~~~~nG~l 357 (373)
T 3tm4_A 346 IIHHRVIGHGGL 357 (373)
T ss_dssp EEEEEEEEETTE
T ss_pred EEEEEEEEcCCE
Confidence 8764 334544
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.7e-13 Score=121.76 Aligned_cols=104 Identities=13% Similarity=0.039 Sum_probs=86.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCC-CCCccceEEe
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF-ASGFVDAVHA 238 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~-~~~~fD~i~~ 238 (328)
++.+|||+| |+|.++..++..++..+|+|+|+|+.+++.|+++++..++ .++.++.+|+.+ +|. .+++||+|++
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~---~~v~~~~~D~~~~l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY---EDIEIFTFDLRKPLPDYALHKFDTFIT 247 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC---CCEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCEEEEEChhhhhchhhccCCccEEEE
Confidence 578999999 9999999999987767999999999999999999987763 389999999988 664 3568999999
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEE-EEEE
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVF-VGTT 269 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l-~i~~ 269 (328)
+..+++. ....+++++.++|||||++ ++..
T Consensus 248 ~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 248 DPPETLE-AIRAFVGRGIATLKGPRCAGYFGI 278 (373)
T ss_dssp CCCSSHH-HHHHHHHHHHHTBCSTTCEEEEEE
T ss_pred CCCCchH-HHHHHHHHHHHHcccCCeEEEEEE
Confidence 8654432 2478899999999999954 4444
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-13 Score=120.78 Aligned_cols=106 Identities=20% Similarity=0.214 Sum_probs=91.3
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|||+|||+|.++..+++.++..+|+|+|+++.+++.|+++++..+ ..++.++.+|+.+.+. .++||+|++
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~---l~~~~~~~~d~~~~~~-~~~~D~Vi~ 192 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNK---LNNVIPILADNRDVEL-KDVADRVIM 192 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTT---CSSEEEEESCGGGCCC-TTCEEEEEE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCEEEEECChHHcCc-cCCceEEEE
Confidence 346789999999999999999998666799999999999999999998866 4578999999987743 678999998
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
.... +...++.++.+.|||||++++.+...
T Consensus 193 d~p~----~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 193 GYVH----KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp CCCS----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCcc----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 7653 66788999999999999999988654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.7e-13 Score=119.06 Aligned_cols=106 Identities=14% Similarity=0.178 Sum_probs=85.5
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC--CCCCCccceEEecc
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHAGA 240 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~i~~~~ 240 (328)
.+|||||||+|.+++.+++..+..+++++|+++.+++.|++++.... .+++.++.+|+.+. .+++++||+|++..
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~---~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~ 167 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR---APRVKIRVDDARMVAESFTPASRDVIIRDV 167 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC---TTTEEEEESCHHHHHHTCCTTCEEEEEECC
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC---CCceEEEECcHHHHHhhccCCCCCEEEECC
Confidence 49999999999999999997777799999999999999999876432 56899999998654 23467899999864
Q ss_pred ccccC-CC---hHHHHHHHHhcccCCcEEEEEEec
Q 020307 241 ALHCW-PS---PSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 241 vl~h~-~d---~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
..... +. ...+++++.++|||||++++....
T Consensus 168 ~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 168 FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence 32221 11 267899999999999999987753
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.46 E-value=7.4e-13 Score=117.40 Aligned_cols=148 Identities=13% Similarity=0.120 Sum_probs=104.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc--CcCCCCCeEEEEecCCC-CCCCCCccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCR-LPFASGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~-lp~~~~~fD~i 236 (328)
.++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++... ++ ..+++.++.+|+.. ++..+++||+|
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~-~~~rv~v~~~D~~~~l~~~~~~fD~I 152 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL-DDPRVDVQVDDGFMHIAKSENQYDVI 152 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT-TSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc-CCCceEEEECcHHHHHhhCCCCeeEE
Confidence 3567999999999999999998754579999999999999999987531 11 14689999999865 33345789999
Q ss_pred EeccccccCCC----hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 237 HAGAALHCWPS----PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 237 ~~~~vl~h~~d----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
++.......+. ...+++++.++|||||++++...+... . .+ ....+.+.+++. |..+
T Consensus 153 i~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~--~---~~-------------~~~~~~~~l~~~-F~~v 213 (275)
T 1iy9_A 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWF--T---PE-------------LITNVQRDVKEI-FPIT 213 (275)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTT--C---HH-------------HHHHHHHHHHTT-CSEE
T ss_pred EECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccc--c---HH-------------HHHHHHHHHHHh-CCCe
Confidence 99654322211 257899999999999999997532110 0 00 123455667777 7666
Q ss_pred EEEE-------eCcEEEEEEeC
Q 020307 313 TSKV-------QQSFIMFAAQK 327 (328)
Q Consensus 313 ~~~~-------~~~~~~~~a~k 327 (328)
.... .+.|.++.+.|
T Consensus 214 ~~~~~~vp~~~~g~w~~~~ask 235 (275)
T 1iy9_A 214 KLYTANIPTYPSGLWTFTIGSK 235 (275)
T ss_dssp EEEEECCTTSGGGCEEEEEEES
T ss_pred EEEEEecCcccCcceEEEEeeC
Confidence 5443 34566667765
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=116.47 Aligned_cols=98 Identities=12% Similarity=0.303 Sum_probs=79.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----------
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGT--YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 227 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------- 227 (328)
.++.+|||+|||+|.++..+++..+ ..+|+|+|+|+.. . ..++.++++|+.+.+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~---~~~v~~~~~d~~~~~~~~~~~~~~i 86 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------P---IPNVYFIQGEIGKDNMNNIKNINYI 86 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------C---CTTCEEEECCTTTTSSCCC------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------C---CCCceEEEccccchhhhhhcccccc
Confidence 4577999999999999999999865 5799999999831 1 457899999998776
Q ss_pred ---------------CCCCccceEEeccccccCC----ChH-------HHHHHHHhcccCCcEEEEEEec
Q 020307 228 ---------------FASGFVDAVHAGAALHCWP----SPS-------NAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 228 ---------------~~~~~fD~i~~~~vl~h~~----d~~-------~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+++++||+|++..++++.. +.. .+++++.++|||||.+++..+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp -----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 5667999999988777642 222 3789999999999999987653
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-14 Score=125.22 Aligned_cols=110 Identities=8% Similarity=0.069 Sum_probs=90.7
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-CCC-----C
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFA-----S 230 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~-----~ 230 (328)
...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...++ ..++.++.+|+.+. +.. .
T Consensus 57 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--~~~i~~~~gda~~~l~~~~~~~~~ 134 (242)
T 3r3h_A 57 RLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ--EHKIKLRLGPALDTLHSLLNEGGE 134 (242)
T ss_dssp HHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC--TTTEEEEESCHHHHHHHHHHHHCS
T ss_pred hhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHhhccCC
Confidence 345678999999999999999999754 67999999999999999999988764 46899999998653 211 4
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
++||+|++... ..+...+++++.++|||||++++.+...
T Consensus 135 ~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~ 173 (242)
T 3r3h_A 135 HQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFW 173 (242)
T ss_dssp SCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred CCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence 78999998765 2346778999999999999999976543
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-13 Score=120.42 Aligned_cols=108 Identities=13% Similarity=0.106 Sum_probs=89.4
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C-C-----C
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-F-----A 229 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~-----~ 229 (328)
...++.+|||||||+|..+..+++..+ +.+++++|+++.+++.|++++...++ ..++.++.+|+.+. + + .
T Consensus 76 ~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--~~~i~~~~gda~~~l~~l~~~~~~ 153 (247)
T 1sui_A 76 KLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV--DHKIDFREGPALPVLDEMIKDEKN 153 (247)
T ss_dssp HHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHSGGG
T ss_pred HhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCCeEEEECCHHHHHHHHHhccCC
Confidence 445678999999999999999999854 67999999999999999999987664 45799999998553 3 1 1
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+++||+|++... ..+...+++++.++|||||++++.+.
T Consensus 154 ~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 154 HGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp TTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred CCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 578999998754 34678899999999999999988653
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.8e-13 Score=119.90 Aligned_cols=111 Identities=17% Similarity=0.083 Sum_probs=87.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc--CcCCCCCeEEEEecCCC-CCCCCCccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCR-LPFASGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~-lp~~~~~fD~i 236 (328)
.++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++... +....+++.++.+|+.+ ++..+++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 4567999999999999999998865679999999999999999987541 10014689999999865 34346789999
Q ss_pred Eecccccc-CCC------hHHHHHHHHhcccCCcEEEEEEe
Q 020307 237 HAGAALHC-WPS------PSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 237 ~~~~vl~h-~~d------~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
++....++ ... ...+++++.++|||||++++...
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 99765433 112 26889999999999999999753
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.9e-14 Score=129.25 Aligned_cols=98 Identities=18% Similarity=0.175 Sum_probs=80.8
Q ss_pred CCCeEEEEcCC------cCHHHHHHHH-hCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC----
Q 020307 161 QGGLLVDVSCG------SGLFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---- 229 (328)
Q Consensus 161 ~~~~vLDiGcG------~G~~~~~l~~-~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---- 229 (328)
++.+||||||| +|..+..+++ .++..+|+|+|+|+.+. .. .+++.++++|+.++|+.
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-------~~-----~~rI~fv~GDa~dlpf~~~l~ 283 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-------VD-----ELRIRTIQGDQNDAEFLDRIA 283 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-------GC-----BTTEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-------hc-----CCCcEEEEecccccchhhhhh
Confidence 56799999999 5555555554 46778999999999973 11 56899999999998876
Q ss_pred --CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 230 --SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 230 --~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+++||+|++.. .+++.++..+|+++.++|||||++++.+..
T Consensus 284 ~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 284 RRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp HHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred cccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 68999999875 467778889999999999999999998865
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.9e-13 Score=118.47 Aligned_cols=109 Identities=13% Similarity=0.086 Sum_probs=84.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh--cCcCCCCCeEEEEecCCC-CCCCCCccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ--DNTILTSNLALVRADVCR-LPFASGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~~~~~~i~~~~~d~~~-lp~~~~~fD~i 236 (328)
.++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++.. .++ ..+++.++.+|+.. ++..+++||+|
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~-~~~~v~~~~~D~~~~l~~~~~~fD~I 167 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF-DDPRAEIVIANGAEYVRKFKNEFDVI 167 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG-GCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccc-CCCceEEEECcHHHHHhhCCCCceEE
Confidence 346799999999999999999885567999999999999999998753 111 14689999999754 34346789999
Q ss_pred Eecccccc-CC-----ChHHHHHHHHhcccCCcEEEEEEe
Q 020307 237 HAGAALHC-WP-----SPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 237 ~~~~vl~h-~~-----d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
++... .+ +. ....+++++.++|||||++++...
T Consensus 168 i~d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 168 IIDST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp EEEC-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEcCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 98532 22 21 126889999999999999999753
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.3e-13 Score=122.77 Aligned_cols=103 Identities=21% Similarity=0.351 Sum_probs=87.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe-
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA- 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~- 238 (328)
.++++|||||||+|.++..+++.|. .+|+|+|.|+ +++.|++.++.+++ ..++.++.+|++++.++ ++||+|++
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~-~~~~a~~~~~~n~~--~~~i~~i~~~~~~~~lp-e~~DvivsE 156 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASA-IWQQAREVVRFNGL--EDRVHVLPGPVETVELP-EQVDAIVSE 156 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECST-THHHHHHHHHHTTC--TTTEEEEESCTTTCCCS-SCEEEEECC
T ss_pred cCCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChH-HHHHHHHHHHHcCC--CceEEEEeeeeeeecCC-ccccEEEee
Confidence 4688999999999999999998874 4799999996 88999999888775 67899999999988776 57999998
Q ss_pred --ccccccCCChHHHHHHHHhcccCCcEEEE
Q 020307 239 --GAALHCWPSPSNAVAEISRILRSGGVFVG 267 (328)
Q Consensus 239 --~~vl~h~~d~~~~l~~~~r~LkpgG~l~i 267 (328)
...+.+-.....++....++|||||+++-
T Consensus 157 ~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 157 WMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp CCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred cccccccccchhhhHHHHHHhhCCCCceECC
Confidence 44456656778889999999999998764
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-13 Score=116.93 Aligned_cols=106 Identities=23% Similarity=0.349 Sum_probs=85.6
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCC------CceEEEEeCCHHHHHHHHHHHHhcCc--CCCCCeEEEEecCCCCCCCC
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGT------YSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRADVCRLPFAS 230 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~------~~~v~g~D~s~~~~~~a~~~~~~~~~--~~~~~i~~~~~d~~~lp~~~ 230 (328)
..++.+|||+|||+|.++..+++... ..+|+++|+++.+++.+++++...+. ....++.++.+|... ++++
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~ 160 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPP 160 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCc
Confidence 45678999999999999999988532 24899999999999999998765320 002478999999876 3444
Q ss_pred -CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 231 -GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 231 -~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++||+|++..+++|+. +++.++|||||++++....
T Consensus 161 ~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 161 NAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp GCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred CCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEec
Confidence 7899999999999875 7889999999999998754
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-13 Score=128.44 Aligned_cols=107 Identities=20% Similarity=0.289 Sum_probs=90.1
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|++++...++ ..++.++.+|+.+++++ ++||+|+
T Consensus 155 ~~~~~~~VLDiGcGtG~la~~la~~~-~~~V~gvD~s~-~l~~A~~~~~~~gl--~~~v~~~~~d~~~~~~~-~~fD~Iv 229 (480)
T 3b3j_A 155 TDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSNNL--TDRIVVIPGKVEEVSLP-EQVDIII 229 (480)
T ss_dssp GGTTTCEEEEESCSTTHHHHHHHHTT-CSEEEEEECHH-HHHHHHHHHHHTTC--TTTEEEEESCTTTCCCS-SCEEEEE
T ss_pred hhcCCCEEEEecCcccHHHHHHHHcC-CCEEEEEEcHH-HHHHHHHHHHHcCC--CCcEEEEECchhhCccC-CCeEEEE
Confidence 34467899999999999999998864 56999999998 99999999887764 47899999999887764 5899999
Q ss_pred eccccccCCCh--HHHHHHHHhcccCCcEEEEEE
Q 020307 238 AGAALHCWPSP--SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 238 ~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+..+++|+.+. ...+.++.++|||||++++..
T Consensus 230 s~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 230 SEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp CCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred EeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 98888887654 467788899999999998644
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-13 Score=117.95 Aligned_cols=110 Identities=19% Similarity=0.247 Sum_probs=88.9
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CC-------
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP------- 227 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp------- 227 (328)
+...++.+|||||||+|.++..+++..+ ..+|+++|+++.+++.|++++...+. ..++.++.+|+.+ ++
T Consensus 56 ~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~~~~~~~~~~~ 133 (239)
T 2hnk_A 56 TKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL--ENKIFLKLGSALETLQVLIDSKS 133 (239)
T ss_dssp HHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHCSS
T ss_pred HHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCCEEEEECCHHHHHHHHHhhcc
Confidence 3445788999999999999999999854 56999999999999999999887653 3459999999754 22
Q ss_pred -------CCC--CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 228 -------FAS--GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 228 -------~~~--~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
|++ ++||+|++....+ +...+++++.++|||||++++.+..
T Consensus 134 ~~~~~~~f~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~ 183 (239)
T 2hnk_A 134 APSWASDFAFGPSSIDLFFLDADKE---NYPNYYPLILKLLKPGGLLIADNVL 183 (239)
T ss_dssp CCGGGTTTCCSTTCEEEEEECSCGG---GHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred cccccccccCCCCCcCEEEEeCCHH---HHHHHHHHHHHHcCCCeEEEEEccc
Confidence 222 7899999886544 4568899999999999999997643
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=9.6e-13 Score=117.23 Aligned_cols=104 Identities=16% Similarity=0.148 Sum_probs=85.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCcc---ceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV---DAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f---D~i 236 (328)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++...++ ..++.++++|+.+. ++ ++| |+|
T Consensus 122 ~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l--~~~v~~~~~D~~~~-~~-~~f~~~D~I 196 (284)
T 1nv8_A 122 YGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGV--SDRFFVRKGEFLEP-FK-EKFASIEMI 196 (284)
T ss_dssp HTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTC--TTSEEEEESSTTGG-GG-GGTTTCCEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECcchhh-cc-cccCCCCEE
Confidence 35679999999999999999999 777999999999999999999988763 34599999999763 22 479 999
Q ss_pred Eec------------cccccCC--------ChHHHHHHHH-hcccCCcEEEEEE
Q 020307 237 HAG------------AALHCWP--------SPSNAVAEIS-RILRSGGVFVGTT 269 (328)
Q Consensus 237 ~~~------------~vl~h~~--------d~~~~l~~~~-r~LkpgG~l~i~~ 269 (328)
+++ .+. |-+ |...+++++. +.|+|||++++..
T Consensus 197 vsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 197 LSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp EECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred EEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 997 222 322 2237899999 9999999999854
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-13 Score=117.01 Aligned_cols=109 Identities=14% Similarity=0.102 Sum_probs=88.6
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC----CCCCC--
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFAS-- 230 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~-- 230 (328)
...++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.|++++...++ ..++.++.+|+.+ ++..+
T Consensus 69 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--~~~i~~~~~d~~~~l~~l~~~~~~ 146 (232)
T 3cbg_A 69 SLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV--AEKISLRLGPALATLEQLTQGKPL 146 (232)
T ss_dssp HHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESCHHHHHHHHHTSSSC
T ss_pred HhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHhcCCC
Confidence 344678999999999999999998754 56999999999999999999887663 4579999999743 33333
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++||+|++.... .+...+++++.++|||||++++.+..
T Consensus 147 ~~fD~V~~d~~~---~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 147 PEFDLIFIDADK---RNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp CCEEEEEECSCG---GGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred CCcCEEEECCCH---HHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 789999987652 35678899999999999999997644
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=118.26 Aligned_cols=109 Identities=14% Similarity=0.144 Sum_probs=85.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc--CcCCCCCeEEEEecCCC-CCCCCCccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCR-LPFASGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~-lp~~~~~fD~i 236 (328)
.++.+|||||||+|.++..+++..+..+++++|+|+.+++.|++++... +. ..+++.++.+|+.+ ++..+++||+|
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~-~~~~v~~~~~D~~~~l~~~~~~fDvI 193 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGY-EDKRVNVFIEDASKFLENVTNTYDVI 193 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGG-GSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc-CCCcEEEEEccHHHHHhhcCCCceEE
Confidence 3567999999999999999998755679999999999999999987641 11 14689999999855 23335789999
Q ss_pred EeccccccCCC-----hHHHHHHHHhcccCCcEEEEEEe
Q 020307 237 HAGAALHCWPS-----PSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 237 ~~~~vl~h~~d-----~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
++... +++.. ...+++++.++|||||++++...
T Consensus 194 i~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 194 IVDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp EEECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 98643 22211 16889999999999999999764
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.6e-13 Score=115.18 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=88.7
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C-CCC----
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-FAS---- 230 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~~~---- 230 (328)
...++.+|||+|||+|.++..+++..+ ..+++++|+++.+++.|++++...++ ..++.++.+|+.+. + +..
T Consensus 66 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--~~~i~~~~~d~~~~~~~~~~~~~~ 143 (229)
T 2avd_A 66 RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA--EHKIDLRLKPALETLDELLAAGEA 143 (229)
T ss_dssp HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHHHHHHTTCT
T ss_pred HhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC--CCeEEEEEcCHHHHHHHHHhcCCC
Confidence 345678999999999999999998754 56999999999999999999987664 46899999998543 1 111
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++||+|++... ..+...+++++.++|||||++++.+..
T Consensus 144 ~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 181 (229)
T 2avd_A 144 GTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVL 181 (229)
T ss_dssp TCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred CCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 68999998654 335578899999999999999997644
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=5.4e-12 Score=111.39 Aligned_cols=129 Identities=15% Similarity=0.166 Sum_probs=102.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.++++++.+++ ..++.++.+|..+++ ..+.||.|++.
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v--~~~v~~~~~D~~~~~-~~~~~D~Vi~~ 199 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKV--EDRMSAYNMDNRDFP-GENIADRILMG 199 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTC--TTTEEEECSCTTTCC-CCSCEEEEEEC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEeCcHHHhc-cccCCCEEEEC
Confidence 468899999999999999999886 35899999999999999999998875 567999999998876 35789999975
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
. .+....+|..+.++|||||++.+.+..... .......+.++++.+..|+++.
T Consensus 200 ~----p~~~~~~l~~a~~~lk~gG~ih~~~~~~e~----------------~~~~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 200 Y----VVRTHEFIPKALSIAKDGAIIHYHNTVPEK----------------LMPREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp C----CSSGGGGHHHHHHHEEEEEEEEEEEEEEGG----------------GTTTTTHHHHHHHHHHTTCEEE
T ss_pred C----CCcHHHHHHHHHHHcCCCCEEEEEeeeccc----------------ccchhHHHHHHHHHHHcCCcEE
Confidence 3 244567889999999999998776644321 1112234678888999999754
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-13 Score=120.99 Aligned_cols=104 Identities=18% Similarity=0.263 Sum_probs=81.0
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++...+. ..++.++.+|+.+++++ +||+|
T Consensus 24 ~~~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~D~~~~~~~--~fD~v 97 (285)
T 1zq9_A 24 AALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPV--ASKLQVLVGDVLKTDLP--FFDTC 97 (285)
T ss_dssp TCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTT--GGGEEEEESCTTTSCCC--CCSEE
T ss_pred cCCCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEcceecccch--hhcEE
Confidence 4445778999999999999999999876 999999999999999998765432 25799999999887765 79999
Q ss_pred Eec-----------cccccCCChHHHH----HHH--HhcccCCcEEE
Q 020307 237 HAG-----------AALHCWPSPSNAV----AEI--SRILRSGGVFV 266 (328)
Q Consensus 237 ~~~-----------~vl~h~~d~~~~l----~~~--~r~LkpgG~l~ 266 (328)
+++ .+++|.+++...+ +|+ +++|||||.++
T Consensus 98 v~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 98 VANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp EEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred EEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 996 4556655543211 333 46899999653
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.3e-12 Score=113.60 Aligned_cols=107 Identities=13% Similarity=0.127 Sum_probs=83.7
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc--CcC------CCCCeEEEEecCCCC-CCCC
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTI------LTSNLALVRADVCRL-PFAS 230 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~------~~~~i~~~~~d~~~l-p~~~ 230 (328)
.++.+|||||||+|.++..+++. +..+++++|+++.+++.|++++ .. ++. ..+++.++.+|+.+. +. +
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~ 150 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-N 150 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-C
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-c
Confidence 45679999999999999999988 6679999999999999999987 32 110 146899999997542 22 5
Q ss_pred CccceEEeccccccCCC-----hHHHHHHHHhcccCCcEEEEEEe
Q 020307 231 GFVDAVHAGAALHCWPS-----PSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d-----~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
++||+|++.... ++.. ...+++++.++|||||++++...
T Consensus 151 ~~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 151 RGFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp CCEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 789999986543 2211 25789999999999999999764
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.38 E-value=9.2e-13 Score=119.77 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=85.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc--CcCCCCCeEEEEecCCCC-C-CCCCccce
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-P-FASGFVDA 235 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~l-p-~~~~~fD~ 235 (328)
.++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++... ++ ..+++.++.+|+.+. + .++++||+
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl-~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY-EDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG-GSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc-CCCcEEEEECCHHHHHHhccCCCccE
Confidence 4568999999999999999998866679999999999999999987642 21 146899999998653 2 34578999
Q ss_pred EEecccccc-CCC---hHHHHHHHHhcccCCcEEEEEE
Q 020307 236 VHAGAALHC-WPS---PSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~~vl~h-~~d---~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
|++...... ..+ ...+++++.++|||||++++..
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 998643111 111 3688999999999999999964
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.38 E-value=6.8e-12 Score=105.58 Aligned_cols=95 Identities=14% Similarity=0.139 Sum_probs=74.8
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.+++++ .++.++++|+.++| ++||+|+++
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~--------~~~~~~~~d~~~~~---~~~D~v~~~ 117 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNC--------GGVNFMVADVSEIS---GKYDTWIMN 117 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHC--------TTSEEEECCGGGCC---CCEEEEEEC
T ss_pred CCCCEEEEEeCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhc--------CCCEEEECcHHHCC---CCeeEEEEC
Confidence 367899999999999999999884 347999999999999999863 37899999998875 689999999
Q ss_pred cccccCCC--hHHHHHHHHhcccCCcEEEEEE
Q 020307 240 AALHCWPS--PSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 240 ~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
..++|+.+ ...+++++.+++ |+ +++..
T Consensus 118 ~p~~~~~~~~~~~~l~~~~~~~--g~-~~~~~ 146 (200)
T 1ne2_A 118 PPFGSVVKHSDRAFIDKAFETS--MW-IYSIG 146 (200)
T ss_dssp CCC-------CHHHHHHHHHHE--EE-EEEEE
T ss_pred CCchhccCchhHHHHHHHHHhc--Cc-EEEEE
Confidence 99998865 347899999988 44 44433
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-12 Score=109.39 Aligned_cols=147 Identities=14% Similarity=0.077 Sum_probs=101.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||||||+|.++..+. +..+|+|+|+|+.+++.++..+... ..+..+..+|....+.+ ++||+|++.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~----g~~~~~~v~D~~~~~~~-~~~DvvLll 175 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREK----DWDFTFALQDVLCAPPA-EAGDLALIF 175 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHT----TCEEEEEECCTTTSCCC-CBCSEEEEE
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhc----CCCceEEEeecccCCCC-CCcchHHHH
Confidence 457799999999999998877 4669999999999999999998765 45788999999877754 589999999
Q ss_pred cccccCCCh-HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeC
Q 020307 240 AALHCWPSP-SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQ 318 (328)
Q Consensus 240 ~vl~h~~d~-~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~ 318 (328)
-++||+.+. ...+.++...|+++|+++-.. .+. +.+.. ..+.-.-...|++.+ ...+.+++....+
T Consensus 176 k~lh~LE~q~~~~~~~ll~aL~~~~vvVsfP-tks----------l~Gr~-~gm~~~Y~~~~e~~~-~~~~~~~~~~~~~ 242 (253)
T 3frh_A 176 KLLPLLEREQAGSAMALLQSLNTPRMAVSFP-TRS----------LGGRG-KGMEANYAAWFEGGL-PAEFEIEDKKTIG 242 (253)
T ss_dssp SCHHHHHHHSTTHHHHHHHHCBCSEEEEEEE-CC----------------------CHHHHHHHHS-CTTEEEEEEEEET
T ss_pred HHHHHhhhhchhhHHHHHHHhcCCCEEEEcC-hHH----------hcCCC-cchhhHHHHHHHHHh-hccchhhhheecC
Confidence 888888533 223448888999987666544 221 11110 011112234566666 4556666667776
Q ss_pred cEEEEEEeC
Q 020307 319 SFIMFAAQK 327 (328)
Q Consensus 319 ~~~~~~a~k 327 (328)
+-++++-+|
T Consensus 243 nEl~~~i~~ 251 (253)
T 3frh_A 243 TELIYLIKK 251 (253)
T ss_dssp TEEEEEEEE
T ss_pred ceEEEEEec
Confidence 665555443
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.2e-12 Score=119.61 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=94.2
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCcc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFV 233 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~f 233 (328)
.+...++.+|||+|||+|..+..+++..+..+++++|+++.+++.+++++...+. ++.++.+|+..++ +++++|
T Consensus 241 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~----~~~~~~~D~~~~~~~~~~~~f 316 (429)
T 1sqg_A 241 WLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM----KATVKQGDGRYPSQWCGEQQF 316 (429)
T ss_dssp HHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC----CCEEEECCTTCTHHHHTTCCE
T ss_pred HcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC----CeEEEeCchhhchhhcccCCC
Confidence 3556788999999999999999999987667999999999999999999887652 5789999998876 556789
Q ss_pred ceEEe------ccccccCCCh----------------HHHHHHHHhcccCCcEEEEEEecc
Q 020307 234 DAVHA------GAALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 234 D~i~~------~~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
|+|++ .+++.+.++. ..+|+++.++|||||++++++...
T Consensus 317 D~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 317 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 99996 3455665553 377999999999999999988544
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.7e-13 Score=114.72 Aligned_cols=108 Identities=16% Similarity=0.194 Sum_probs=88.2
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C-C-----C
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-F-----A 229 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~-----~ 229 (328)
...++.+|||||||+|..+..+++..+ ..+++++|+++.+++.|+++++..++ ..++.++.+|+.+. + + .
T Consensus 67 ~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--~~~i~~~~gda~~~l~~l~~~~~~ 144 (237)
T 3c3y_A 67 KLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV--EHKINFIESDAMLALDNLLQGQES 144 (237)
T ss_dssp HHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHSTTC
T ss_pred HhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHhccCC
Confidence 345678999999999999999999854 67999999999999999999987764 45799999998543 2 2 1
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.++||+|++.... .+...+++++.++|||||++++.+.
T Consensus 145 ~~~fD~I~~d~~~---~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 145 EGSYDFGFVDADK---PNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp TTCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred CCCcCEEEECCch---HHHHHHHHHHHHhcCCCeEEEEecC
Confidence 5789999986432 2457889999999999999988653
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-12 Score=110.77 Aligned_cols=148 Identities=11% Similarity=0.055 Sum_probs=108.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.+..+|||||||.|-++..++...+..+|+++|+++.+++.++.++...+ .+..+...|...-+ +.+.||+|++.
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g----~~~~~~v~D~~~~~-p~~~~DvaL~l 205 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLN----VPHRTNVADLLEDR-LDEPADVTLLL 205 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTT----CCEEEEECCTTTSC-CCSCCSEEEET
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcC----CCceEEEeeecccC-CCCCcchHHHH
Confidence 34679999999999999999988888899999999999999999998764 35788899986554 46789999999
Q ss_pred cccccCCChH-HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeC
Q 020307 240 AALHCWPSPS-NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQ 318 (328)
Q Consensus 240 ~vl~h~~d~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~ 318 (328)
-+++|+.+.. ..+-++...|+|+|+++...--.-..-.+.+...+ ...|++.+.+.|..+-+ .+.+
T Consensus 206 kti~~Le~q~kg~g~~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y------------~~~~e~~~~~~g~~~~~-~~~~ 272 (281)
T 3lcv_B 206 KTLPCLETQQRGSGWEVIDIVNSPNIVVTFPTKSLGQRSKGMFQNY------------SQSFESQARERSCRIQR-LEIG 272 (281)
T ss_dssp TCHHHHHHHSTTHHHHHHHHSSCSEEEEEEECC-------CHHHHH------------HHHHHHHHHHHTCCEEE-EEET
T ss_pred HHHHHhhhhhhHHHHHHHHHhCCCCEEEeccchhhcCCCcchhhHH------------HHHHHHHHHhcCCceee-eeec
Confidence 9999996553 23338999999999887755311111111112221 35788889999996555 5555
Q ss_pred cEEEEEE
Q 020307 319 SFIMFAA 325 (328)
Q Consensus 319 ~~~~~~a 325 (328)
+-.+++-
T Consensus 273 nEl~y~i 279 (281)
T 3lcv_B 273 NELIYVI 279 (281)
T ss_dssp TEEEEEE
T ss_pred CeeEEEe
Confidence 5444443
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-12 Score=118.08 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=85.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh--cCcCCCCCeEEEEecCCC-CCCCCCccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ--DNTILTSNLALVRADVCR-LPFASGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~~~~~~i~~~~~d~~~-lp~~~~~fD~i 236 (328)
.++.+|||||||+|.++..+++..+..+++++|+|+.+++.|++++.. .++ ..+++.++.+|+.+ ++..+++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~-~~~rv~v~~~Da~~~l~~~~~~fD~I 172 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY-SSSKLTLHVGDGFEFMKQNQDAFDVI 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG-GCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhccc-CCCcEEEEECcHHHHHhhCCCCceEE
Confidence 456799999999999999999886667999999999999999998764 121 14689999999855 34446789999
Q ss_pred EeccccccCCC----hHHHHHHHHhcccCCcEEEEEEec
Q 020307 237 HAGAALHCWPS----PSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 237 ~~~~vl~h~~d----~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++....+..+. ...+++++.++|||||++++...+
T Consensus 173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 98654322111 146899999999999999997643
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-11 Score=103.43 Aligned_cols=123 Identities=14% Similarity=0.147 Sum_probs=94.0
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|||+|||+|.++..+++.+. .+++|+|+|+.+++.+++++...+ . ++.++.+|+.+++ ++||+|++
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~-~~~~~~~d~~~~~---~~~D~v~~ 118 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFK---G-KFKVFIGDVSEFN---SRVDIVIM 118 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGT---T-SEEEEESCGGGCC---CCCSEEEE
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcC---C-CEEEEECchHHcC---CCCCEEEE
Confidence 34678999999999999999998853 479999999999999999887654 2 7999999998875 48999999
Q ss_pred ccccccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 239 GAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 239 ~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
+..+++.. ....+++++.+++ |+.+++..... -+.+.+.+.+++.||++..
T Consensus 119 ~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~~~----------------------~~~~~~~~~l~~~g~~~~~ 171 (207)
T 1wy7_A 119 NPPFGSQRKHADRPFLLKAFEIS--DVVYSIHLAKP----------------------EVRRFIEKFSWEHGFVVTH 171 (207)
T ss_dssp CCCCSSSSTTTTHHHHHHHHHHC--SEEEEEEECCH----------------------HHHHHHHHHHHHTTEEEEE
T ss_pred cCCCccccCCchHHHHHHHHHhc--CcEEEEEeCCc----------------------CCHHHHHHHHHHCCCeEEE
Confidence 88777664 3357889999988 55444332110 0123567788999997654
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.3e-12 Score=120.07 Aligned_cols=118 Identities=18% Similarity=0.182 Sum_probs=93.8
Q ss_pred cccc--CCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-CCCc
Q 020307 157 FKSA--QGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGF 232 (328)
Q Consensus 157 l~~~--~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~ 232 (328)
+... ++.+|||+|||+|..+..+++.. ....|+++|+|+.+++.++++++..+ ..++.++.+|+..++. ..++
T Consensus 111 L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g---~~nv~~~~~D~~~~~~~~~~~ 187 (479)
T 2frx_A 111 LFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCG---ISNVALTHFDGRVFGAAVPEM 187 (479)
T ss_dssp HTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT---CCSEEEECCCSTTHHHHSTTC
T ss_pred hCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCCHHHhhhhcccc
Confidence 4445 78899999999999999999874 34689999999999999999998876 4579999999988763 4578
Q ss_pred cceEEec------cccccCCC----------------hHHHHHHHHhcccCCcEEEEEEeccCCCCc
Q 020307 233 VDAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYTSST 277 (328)
Q Consensus 233 fD~i~~~------~vl~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~ 277 (328)
||+|++. .++.+.++ ...+|+++.++|||||++++++.......+
T Consensus 188 fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~En 254 (479)
T 2frx_A 188 FDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEEN 254 (479)
T ss_dssp EEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTT
T ss_pred CCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccC
Confidence 9999972 34444333 136799999999999999998865543333
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=109.79 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=76.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCC---------ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEE-EecCCCCC--
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTY---------SGVVALDFSENMLRQCYDFIKQDNTILTSNLALV-RADVCRLP-- 227 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~---------~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~-~~d~~~lp-- 227 (328)
.++.+|||+|||+|.++..+++..+. .+|+|+|+|+.. . ..++.++ .+|+...+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~---~~~~~~~~~~d~~~~~~~ 86 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------P---LEGATFLCPADVTDPRTS 86 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------C---CTTCEEECSCCTTSHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------c---CCCCeEEEeccCCCHHHH
Confidence 46789999999999999999998432 689999999831 1 3467888 88886643
Q ss_pred ------CCCCccceEEeccccccC----CCh-------HHHHHHHHhcccCCcEEEEEEecc
Q 020307 228 ------FASGFVDAVHAGAALHCW----PSP-------SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 228 ------~~~~~fD~i~~~~vl~h~----~d~-------~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
+++++||+|++...++.. .++ ..+++++.++|||||++++.++..
T Consensus 87 ~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (196)
T 2nyu_A 87 QRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG 148 (196)
T ss_dssp HHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred HHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 335689999997654432 233 478999999999999999987643
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.6e-13 Score=119.31 Aligned_cols=103 Identities=20% Similarity=0.220 Sum_probs=77.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh-cCcCCCCCeEEE--EecCCCCCCCCCccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-DNTILTSNLALV--RADVCRLPFASGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-~~~~~~~~i~~~--~~d~~~lp~~~~~fD~i 236 (328)
.++.+|||+|||+|.++..+++. .+|+|+|+++ ++..++++... ... ..++.++ ++|+..+| +++||+|
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~--~~~v~~~~~~~D~~~l~--~~~fD~V 152 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETF--GWNLITFKSKVDVTKME--PFQADTV 152 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCT--TGGGEEEECSCCGGGCC--CCCCSEE
T ss_pred CCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhc--CCCeEEEeccCcHhhCC--CCCcCEE
Confidence 46789999999999999999988 3899999998 54333211000 000 1178899 89998876 6799999
Q ss_pred EeccccccCCChH-------HHHHHHHhcccCCc--EEEEEEec
Q 020307 237 HAGAALHCWPSPS-------NAVAEISRILRSGG--VFVGTTFL 271 (328)
Q Consensus 237 ~~~~vl~h~~d~~-------~~l~~~~r~LkpgG--~l~i~~~~ 271 (328)
++..+ ++..++. .+|+++.++||||| .+++.++.
T Consensus 153 vsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 153 LCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp EECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred EECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 99887 5555542 37899999999999 99987765
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-12 Score=115.96 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=86.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCc-CCCCCeEEEEecCCCC-CCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-PFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~~~~~i~~~~~d~~~l-p~~~~~fD~i~ 237 (328)
.++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++...+. ...+++.++.+|+.+. +..+++||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 456899999999999999999886667999999999999999998754210 0146899999998653 22357899999
Q ss_pred eccccccCCCh----HHHHHHHHhcccCCcEEEEEEe
Q 020307 238 AGAALHCWPSP----SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 238 ~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+.....+.+.. ..+++++.++|||||++++...
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 86543222211 5889999999999999998754
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-12 Score=121.33 Aligned_cols=112 Identities=18% Similarity=0.182 Sum_probs=90.9
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCccc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVD 234 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD 234 (328)
+...++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.++++++..+ .. +.++.+|+..++ ...++||
T Consensus 97 L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G---~~-v~~~~~Da~~l~~~~~~~FD 172 (464)
T 3m6w_A 97 LDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWG---AP-LAVTQAPPRALAEAFGTYFH 172 (464)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC---CC-CEEECSCHHHHHHHHCSCEE
T ss_pred cCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---Ce-EEEEECCHHHhhhhccccCC
Confidence 5566889999999999999999998743 3689999999999999999998876 34 889999987765 2467899
Q ss_pred eEEe------ccccccCCCh----------------HHHHHHHHhcccCCcEEEEEEecc
Q 020307 235 AVHA------GAALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 235 ~i~~------~~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
+|++ ..++.+-++. ..+|+++.++|||||+++.++...
T Consensus 173 ~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 173 RVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp EEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred EEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 9995 2334444443 578999999999999999988554
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-12 Score=118.37 Aligned_cols=108 Identities=13% Similarity=0.132 Sum_probs=82.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc--CcCCCCCeEEEEecCCC-CCCCCCccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCR-LPFASGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~-lp~~~~~fD~i 236 (328)
.++.+|||||||+|.++..+++..+..+++++|+|+.+++.|++++... ++ ..+++.++.+|+.+ ++..+++||+|
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~-~~~rv~~~~~D~~~~l~~~~~~fD~I 185 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGF-SHPKLDLFCGDGFEFLKNHKNEFDVI 185 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGG-GCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhcccc-CCCCEEEEEChHHHHHHhcCCCceEE
Confidence 3567999999999999999998866679999999999999999987642 11 14689999999865 33346789999
Q ss_pred EeccccccCCCh-----HHHHHHHHhcccCCcEEEEEE
Q 020307 237 HAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 237 ~~~~vl~h~~d~-----~~~l~~~~r~LkpgG~l~i~~ 269 (328)
++... +++..+ ..+++++.++|||||++++..
T Consensus 186 i~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 186 ITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp EECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 98653 333211 578999999999999999875
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.5e-13 Score=118.00 Aligned_cols=103 Identities=18% Similarity=0.199 Sum_probs=77.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh-cCcCCCCCeEEE--EecCCCCCCCCCccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-DNTILTSNLALV--RADVCRLPFASGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-~~~~~~~~i~~~--~~d~~~lp~~~~~fD~i 236 (328)
.++.+|||+|||+|.++..+++. .+|+|+|+++ ++..+++.... ... ..++.++ ++|+..++ +++||+|
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~--~~~v~~~~~~~D~~~l~--~~~fD~V 144 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESY--GWNIVKFKSRVDIHTLP--VERTDVI 144 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBT--TGGGEEEECSCCTTTSC--CCCCSEE
T ss_pred CCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhcc--CCCeEEEecccCHhHCC--CCCCcEE
Confidence 46789999999999999999987 3899999998 43222211000 000 1168888 89998876 6799999
Q ss_pred EeccccccCCChH-------HHHHHHHhcccCCc--EEEEEEec
Q 020307 237 HAGAALHCWPSPS-------NAVAEISRILRSGG--VFVGTTFL 271 (328)
Q Consensus 237 ~~~~vl~h~~d~~-------~~l~~~~r~LkpgG--~l~i~~~~ 271 (328)
++..+ ++..++. .+|+++.++||||| .+++.++.
T Consensus 145 ~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 145 MCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp EECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 99877 6655542 37899999999999 99997765
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-12 Score=114.02 Aligned_cols=100 Identities=12% Similarity=0.067 Sum_probs=83.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc--CcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
..+.+|||||||+|.++..+++. + .+++++|+++.+++.|++++... +. ..+++.++.+|..+.. ++||+|+
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~-~~~rv~~~~~D~~~~~---~~fD~Ii 144 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVK-NNKNFTHAKQLLDLDI---KKYDLIF 144 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHH-TCTTEEEESSGGGSCC---CCEEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhcccc-CCCeEEEEechHHHHH---hhCCEEE
Confidence 34679999999999999999988 5 79999999999999998875421 11 1468999999987754 7899999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+. ..+|..+++++.++|||||++++...
T Consensus 145 ~d-----~~dp~~~~~~~~~~L~pgG~lv~~~~ 172 (262)
T 2cmg_A 145 CL-----QEPDIHRIDGLKRMLKEDGVFISVAK 172 (262)
T ss_dssp ES-----SCCCHHHHHHHHTTEEEEEEEEEEEE
T ss_pred EC-----CCChHHHHHHHHHhcCCCcEEEEEcC
Confidence 86 35788899999999999999999653
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-12 Score=120.47 Aligned_cols=114 Identities=17% Similarity=0.161 Sum_probs=89.8
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCcc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFV 233 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~f 233 (328)
.+...++.+|||+|||+|..+..++... ...+|+++|+|+.+++.+++++...+ ..++.++.+|+..++ ..+++|
T Consensus 100 ~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g---~~nv~v~~~Da~~l~~~~~~~F 176 (456)
T 3m4x_A 100 AAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG---VSNAIVTNHAPAELVPHFSGFF 176 (456)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT---CSSEEEECCCHHHHHHHHTTCE
T ss_pred HcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeCCHHHhhhhccccC
Confidence 3556788999999999999999998863 34689999999999999999998877 457999999987764 235789
Q ss_pred ceEEecc------ccccCCCh----------------HHHHHHHHhcccCCcEEEEEEecc
Q 020307 234 DAVHAGA------ALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 234 D~i~~~~------vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
|+|++.- ++.+-++. ..+|+++.++|||||+++.++-..
T Consensus 177 D~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 177 DRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp EEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 9999742 23221111 267999999999999999988543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.8e-12 Score=118.20 Aligned_cols=110 Identities=16% Similarity=0.146 Sum_probs=85.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCC-CeEEEEecCCCC-CC---CCCccc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NLALVRADVCRL-PF---ASGFVD 234 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~-~i~~~~~d~~~l-p~---~~~~fD 234 (328)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++++..++ .. ++.++++|+.+. +. ...+||
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~--~~~~v~~~~~D~~~~l~~~~~~~~~fD 287 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHL--DMANHQLVVMDVFDYFKYARRHHLTYD 287 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTC--CCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCC--CccceEEEECCHHHHHHHHHHhCCCcc
Confidence 467899999999999999999865 24899999999999999999988763 33 899999998652 21 245899
Q ss_pred eEEecccc-----ccCCCh----HHHHHHHHhcccCCcEEEEEEecc
Q 020307 235 AVHAGAAL-----HCWPSP----SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 235 ~i~~~~vl-----~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
+|++.--. .+..+. ..+++.+.++|+|||+++++....
T Consensus 288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99985322 233333 346778899999999999987543
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.5e-12 Score=116.03 Aligned_cols=108 Identities=17% Similarity=0.188 Sum_probs=88.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCC-C-CeEEEEecCCCCCC----CCCcc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT-S-NLALVRADVCRLPF----ASGFV 233 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~-~-~i~~~~~d~~~lp~----~~~~f 233 (328)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++...+ . . ++.++.+|+.+... ...+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ng---l~~~~v~~~~~D~~~~~~~~~~~~~~f 294 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNK---LDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTT---CCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcC---CCccceEEEECCHHHHHHHHHhcCCCC
Confidence 467899999999999999999986 4589999999999999999998765 3 3 79999999866421 14689
Q ss_pred ceEEecc---------ccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 234 DAVHAGA---------ALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 234 D~i~~~~---------vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
|+|++.- +.++..+...++.++.+.|+|||++++++..
T Consensus 295 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp EEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9999862 2333345678899999999999999998854
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.30 E-value=4.3e-12 Score=106.34 Aligned_cols=97 Identities=16% Similarity=0.287 Sum_probs=74.8
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC-------C--
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-------S-- 230 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-------~-- 230 (328)
.++.+|||+|||+|.++..+++.+ .+|+|+|+++.. . .+++.++++|+.+.+.. .
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~~--~~V~gvD~~~~~-----------~---~~~v~~~~~D~~~~~~~~~~~~~~~~~ 87 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSLA--RKIISIDLQEME-----------E---IAGVRFIRCDIFKETIFDDIDRALREE 87 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTTC--SEEEEEESSCCC-----------C---CTTCEEEECCTTSSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEeecCCHHHHHHHHcC--CcEEEEeccccc-----------c---CCCeEEEEccccCHHHHHHHHHHhhcc
Confidence 468899999999999999999884 499999999741 1 46899999999876521 1
Q ss_pred --CccceEEeccccccCCC-----------hHHHHHHHHhcccCCcEEEEEEecc
Q 020307 231 --GFVDAVHAGAALHCWPS-----------PSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 231 --~~fD~i~~~~vl~h~~d-----------~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
++||+|++......... ...+++.+.++|||||.+++..+..
T Consensus 88 ~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~ 142 (191)
T 3dou_A 88 GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG 142 (191)
T ss_dssp TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence 48999999654322111 2467889999999999999988643
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=7.6e-12 Score=116.11 Aligned_cols=107 Identities=20% Similarity=0.240 Sum_probs=85.8
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC----CCCccceE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDAV 236 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~i 236 (328)
++.+|||+|||+|.++..++... .+|+|+|+|+.+++.|++++...+ ..++.++.+|+.+... ..++||+|
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~n~~~n~---~~~~~~~~~d~~~~~~~~~~~~~~fD~I 283 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGF--REVVAVDSSAEALRRAEENARLNG---LGNVRVLEANAFDLLRRLEKEGERFDLV 283 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHE--EEEEEEESCHHHHHHHHHHHHHTT---CTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC---CCCceEEECCHHHHHHHHHhcCCCeeEE
Confidence 67799999999999999999883 489999999999999999998876 3459999999866431 25689999
Q ss_pred Eecccc---------ccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 237 HAGAAL---------HCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 237 ~~~~vl---------~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
++.--. ....+...+++++.++|+|||++++++...
T Consensus 284 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 284 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 984321 111234578999999999999999988643
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.27 E-value=4.6e-12 Score=118.15 Aligned_cols=109 Identities=16% Similarity=0.147 Sum_probs=87.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC----CCCccceE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDAV 236 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~i 236 (328)
++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++...++ ..++.++.+|+.+... ..++||+|
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g-~~~v~~vD~s~~~l~~a~~n~~~n~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V 293 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGV--EDRMKFIVGSAFEEMEKLQKKGEKFDIV 293 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCC--CccceEEECCHHHHHHHHHhhCCCCCEE
Confidence 67899999999999999999874 34899999999999999999987663 2389999999866431 25689999
Q ss_pred Eeccc---------cccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 237 HAGAA---------LHCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 237 ~~~~v---------l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
++.-- .++..+...++.++.++|+|||++++.+.+.
T Consensus 294 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 294 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 98532 2222345678999999999999999988654
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-11 Score=111.79 Aligned_cols=128 Identities=11% Similarity=0.127 Sum_probs=98.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCC-----ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTY-----SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 234 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~-----~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD 234 (328)
.++.+|||+|||+|.++..+++..+. .+++|+|+++.+++.|+.++...+ . ++.++.+|.... ...++||
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g---~-~~~i~~~D~l~~-~~~~~fD 203 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR---Q-KMTLLHQDGLAN-LLVDPVD 203 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT---C-CCEEEESCTTSC-CCCCCEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC---C-CceEEECCCCCc-cccCCcc
Confidence 35679999999999999999877532 589999999999999999887664 2 688999998653 2457899
Q ss_pred eEEeccccccCCChH------------------HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCC
Q 020307 235 AVHAGAALHCWPSPS------------------NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLT 296 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~------------------~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (328)
+|+++-.+.++++.. .+++.+.+.|||||++++..++.. ...-.
T Consensus 204 ~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~------------------~~~~~ 265 (344)
T 2f8l_A 204 VVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAM------------------FGTSD 265 (344)
T ss_dssp EEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGG------------------GGSTT
T ss_pred EEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchh------------------cCCch
Confidence 999987766554332 579999999999999999987531 00112
Q ss_pred HHHHHHHHHHCCCe
Q 020307 297 EEEIEDLCTSCGLT 310 (328)
Q Consensus 297 ~~~l~~ll~~~Gf~ 310 (328)
...+++.+.+.|+.
T Consensus 266 ~~~ir~~l~~~~~~ 279 (344)
T 2f8l_A 266 FAKVDKFIKKNGHI 279 (344)
T ss_dssp HHHHHHHHHHHEEE
T ss_pred HHHHHHHHHhCCeE
Confidence 36777777777763
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-12 Score=111.27 Aligned_cols=102 Identities=10% Similarity=0.179 Sum_probs=77.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCC-Cccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS-GFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~-~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++.. ..++.++.+|+.++++++ ..|++
T Consensus 26 ~~~~~~~~VLDiG~G~G~lt~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~~~~~~~~~~~v 98 (244)
T 1qam_A 26 IRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQFKFPKNQSYKI 98 (244)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGGCCCCSSCCCEE
T ss_pred CCCCCCCEEEEEeCCchHHHHHHHHcCC--eEEEEECCHHHHHHHHHhhcc-----CCCeEEEEChHHhCCcccCCCeEE
Confidence 4445788999999999999999999874 999999999999999988653 458999999999988764 45643
Q ss_pred EEe----------ccccccCCChHHHH----HHHHhcccCCcEE
Q 020307 236 VHA----------GAALHCWPSPSNAV----AEISRILRSGGVF 265 (328)
Q Consensus 236 i~~----------~~vl~h~~d~~~~l----~~~~r~LkpgG~l 265 (328)
|.. ..+++|...+..++ ..+.|+++|+|.+
T Consensus 99 v~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l 142 (244)
T 1qam_A 99 FGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSL 142 (244)
T ss_dssp EEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHH
T ss_pred EEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcch
Confidence 321 23445544444444 4478888888865
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.9e-11 Score=109.36 Aligned_cols=101 Identities=19% Similarity=0.201 Sum_probs=84.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++.. ++. ..+|+|+|+|+.+++.+++++...++ ..++.++.+|+.+.. ++||+|++.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~~--~~~V~~vD~s~~ai~~a~~n~~~n~l--~~~v~~~~~D~~~~~---~~fD~Vi~d 265 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CKN--AKKIYAIDINPHAIELLKKNIKLNKL--EHKIIPILSDVREVD---VKGNRVIMN 265 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TTT--SSEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCGGGCC---CCEEEEEEC
T ss_pred CCCCEEEEccCccCHHHHh-ccC--CCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECChHHhc---CCCcEEEEC
Confidence 3678999999999999999 773 45999999999999999999988764 358999999998765 789999985
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
-. .....+++.+.++|+|||++++.+...
T Consensus 266 pP----~~~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 266 LP----KFAHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp CT----TTGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred Cc----HhHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 31 123478999999999999999988653
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-11 Score=122.03 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=89.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCC-CCeEEEEecCCC-CCCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT-SNLALVRADVCR-LPFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~-~~i~~~~~d~~~-lp~~~~~fD~i~ 237 (328)
.++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.|++++...++ . .++.++++|+.+ ++...++||+|+
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl--~~~~v~~i~~D~~~~l~~~~~~fD~Ii 614 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGL--TGRAHRLIQADCLAWLREANEQFDLIF 614 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTC--CSTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred cCCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCC--CccceEEEecCHHHHHHhcCCCccEEE
Confidence 4688999999999999999998764 4699999999999999999988764 3 479999999866 344467899999
Q ss_pred ecc-----------ccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 238 AGA-----------ALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 238 ~~~-----------vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+.- ++++..+...+++.+.++|+|||++++++..
T Consensus 615 ~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 615 IDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp ECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 853 2333345567899999999999999987754
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.5e-11 Score=110.35 Aligned_cols=106 Identities=16% Similarity=0.070 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCccceEEec
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~i~~~ 239 (328)
++.+|||+|||+|.++..+++.+. .|+++|+|+.+++.|++++...++ ...+.++|+.+.. ...+.||+|++.
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~----~~~~~~~D~~~~l~~~~~~fD~Ii~d 287 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGL----RVDIRHGEALPTLRGLEGPFHHVLLD 287 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC----CCEEEESCHHHHHHTCCCCEEEEEEC
T ss_pred CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCC----CCcEEEccHHHHHHHhcCCCCEEEEC
Confidence 488999999999999999999875 699999999999999999987763 2356688886532 213449999986
Q ss_pred ccccc---------CCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 240 AALHC---------WPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 240 ~vl~h---------~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
--... ..+...+++.+.++|||||++++.+...
T Consensus 288 pP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 288 PPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp CCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 33211 1123578899999999999999877543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.2e-11 Score=107.09 Aligned_cols=118 Identities=12% Similarity=-0.020 Sum_probs=85.1
Q ss_pred ccccCCCeEEEEcCCc------CHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEE-EEecCCCCCC
Q 020307 157 FKSAQGGLLVDVSCGS------GLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL-VRADVCRLPF 228 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~------G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~-~~~d~~~lp~ 228 (328)
+...++.+|||+|||+ |. ..+++..+ ..+|+|+|+|+. + .++.+ +++|+.++++
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v---------------~~v~~~i~gD~~~~~~ 120 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V---------------SDADSTLIGDCATVHT 120 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B---------------CSSSEEEESCGGGCCC
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C---------------CCCEEEEECccccCCc
Confidence 3456788999999955 65 44454433 569999999987 1 15678 9999988776
Q ss_pred CCCccceEEecccccc--------C---CChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCH
Q 020307 229 ASGFVDAVHAGAALHC--------W---PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTE 297 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h--------~---~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (328)
. ++||+|+++...+. . .....+++++.++|||||++++..+... ..
T Consensus 121 ~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~----------------------~~ 177 (290)
T 2xyq_A 121 A-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS----------------------WN 177 (290)
T ss_dssp S-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS----------------------CC
T ss_pred c-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC----------------------CH
Confidence 4 68999998643221 1 1124789999999999999999764321 22
Q ss_pred HHHHHHHHHCCCeEEEEE
Q 020307 298 EEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 298 ~~l~~ll~~~Gf~~v~~~ 315 (328)
.++.+++++.||..++..
T Consensus 178 ~~l~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 178 ADLYKLMGHFSWWTAFVT 195 (290)
T ss_dssp HHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHcCCcEEEEE
Confidence 478889999999877644
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.2e-10 Score=106.80 Aligned_cols=104 Identities=15% Similarity=0.235 Sum_probs=80.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC----CCCCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~ 232 (328)
+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++...+ ..++.|+.+|+.+ +++.+++
T Consensus 282 l~~~~~~~VLDlgcG~G~~~~~la~~~~--~V~gvD~s~~al~~A~~n~~~~~---~~~v~f~~~d~~~~l~~~~~~~~~ 356 (433)
T 1uwv_A 282 LDVQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLNG---LQNVTFYHENLEEDVTKQPWAKNG 356 (433)
T ss_dssp HTCCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCTTSCCSSSGGGTTC
T ss_pred hcCCCCCEEEECCCCCCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHHHHcC---CCceEEEECCHHHHhhhhhhhcCC
Confidence 4445678999999999999999998854 99999999999999999998766 4589999999976 3455678
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
||+|++.---.- ...+++.+.+ ++|+++++++.
T Consensus 357 fD~Vv~dPPr~g---~~~~~~~l~~-~~p~~ivyvsc 389 (433)
T 1uwv_A 357 FDKVLLDPARAG---AAGVMQQIIK-LEPIRIVYVSC 389 (433)
T ss_dssp CSEEEECCCTTC---CHHHHHHHHH-HCCSEEEEEES
T ss_pred CCEEEECCCCcc---HHHHHHHHHh-cCCCeEEEEEC
Confidence 999998422111 1244555543 78988888755
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-12 Score=114.80 Aligned_cols=103 Identities=15% Similarity=0.114 Sum_probs=74.7
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeC----CHHHHHHHHHHHHhcCcCCCCCeEEEEe-cCCCCCCCCCccc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF----SENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVD 234 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~----s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD 234 (328)
.++.+|||+|||+|.++..+++.+ +|+|+|+ ++.+++... ....+ .+++.++++ |+..+| .++||
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~~---~V~gvD~~~~~~~~~~~~~~--~~~~~---~~~v~~~~~~D~~~l~--~~~fD 150 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGLK---NVREVKGLTKGGPGHEEPIP--MSTYG---WNLVRLQSGVDVFFIP--PERCD 150 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTST---TEEEEEEECCCSTTSCCCCC--CCSTT---GGGEEEECSCCTTTSC--CCCCS
T ss_pred CCCCEEEEEcCCCCHHHHHHHhcC---CEEEEeccccCchhHHHHHH--hhhcC---CCCeEEEeccccccCC--cCCCC
Confidence 467899999999999999999882 8999999 554332111 01100 257899998 888775 56899
Q ss_pred eEEeccccc---cCCChH---HHHHHHHhcccCCcEEEEEEecc
Q 020307 235 AVHAGAALH---CWPSPS---NAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 235 ~i~~~~vl~---h~~d~~---~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
+|++..++. +..+.. .+|+++.++|||||.+++..+..
T Consensus 151 ~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 151 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred EEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 999977653 222222 47899999999999999877654
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-13 Score=119.23 Aligned_cols=105 Identities=11% Similarity=0.190 Sum_probs=81.9
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCC-Cccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS-GFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~-~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++.. ..++.++.+|+.++++++ ++| .
T Consensus 25 ~~~~~~~~VLDiG~G~G~~~~~l~~~~~--~v~~id~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~~~~~~~~~f-~ 96 (245)
T 1yub_A 25 LNLKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQFQFPNKQRY-K 96 (245)
T ss_dssp CCCCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTTTTCCCSSEE-E
T ss_pred cCCCCCCEEEEEeCCCCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHhcc-----CCceEEEECChhhcCcccCCCc-E
Confidence 4445678999999999999999999874 999999999999988876542 458999999999988763 678 5
Q ss_pred EEec-----------cccccCCChHHHH----HHHHhcccCCcEEEEEE
Q 020307 236 VHAG-----------AALHCWPSPSNAV----AEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~-----------~vl~h~~d~~~~l----~~~~r~LkpgG~l~i~~ 269 (328)
|+++ .+++|..++...+ +.+.|+|||||.+++..
T Consensus 97 vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 97 IVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp EEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred EEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 5554 2234445555556 77999999999876644
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=5.4e-10 Score=104.81 Aligned_cols=100 Identities=17% Similarity=0.171 Sum_probs=79.2
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++...+ .. +.++.+|+.++.. . +||+|++
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~~~--~V~gvD~s~~ai~~A~~n~~~ng---l~-v~~~~~d~~~~~~-~-~fD~Vv~ 359 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKRGF--NVKGFDSNEFAIEMARRNVEINN---VD-AEFEVASDREVSV-K-GFDTVIV 359 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT---CC-EEEEECCTTTCCC-T-TCSEEEE
T ss_pred cCCCCEEEEeeccchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcC---Cc-EEEEECChHHcCc-c-CCCEEEE
Confidence 34678999999999999999999865 99999999999999999988765 34 9999999988752 2 8999998
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.-.-.. -...+++.+. .|+|||+++++.
T Consensus 360 dPPr~g--~~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 360 DPPRAG--LHPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp CCCTTC--SCHHHHHHHH-HHCCSEEEEEES
T ss_pred cCCccc--hHHHHHHHHH-hcCCCcEEEEEC
Confidence 533111 1234566654 599999999865
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.7e-11 Score=107.06 Aligned_cols=99 Identities=19% Similarity=0.315 Sum_probs=73.2
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++...+ ..++.++.+|+.+++++ +||+|
T Consensus 38 ~~~~~~~~VLDiG~G~G~lt~~La~~~~--~v~~vDi~~~~~~~a~~~~~~~~---~~~v~~~~~D~~~~~~~--~~D~V 110 (299)
T 2h1r_A 38 AKIKSSDIVLEIGCGTGNLTVKLLPLAK--KVITIDIDSRMISEVKKRCLYEG---YNNLEVYEGDAIKTVFP--KFDVC 110 (299)
T ss_dssp HCCCTTCEEEEECCTTSTTHHHHTTTSS--EEEEECSCHHHHHHHHHHHHHTT---CCCEEC----CCSSCCC--CCSEE
T ss_pred cCCCCcCEEEEEcCcCcHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC---CCceEEEECchhhCCcc--cCCEE
Confidence 4455778999999999999999998865 99999999999999999887544 46899999999888753 89999
Q ss_pred EeccccccCCChH--HHH---------------HHHHhcccCCc
Q 020307 237 HAGAALHCWPSPS--NAV---------------AEISRILRSGG 263 (328)
Q Consensus 237 ~~~~vl~h~~d~~--~~l---------------~~~~r~LkpgG 263 (328)
+++-. .++..+. ..+ ..+.|+++++|
T Consensus 111 v~n~p-y~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 111 TANIP-YKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp EEECC-GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred EEcCC-cccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 98643 3333331 223 34668888877
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-09 Score=98.17 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=84.5
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCC---C
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS---G 231 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~---~ 231 (328)
.+...++.+|||+|||+|..+..+++. ++..+|+++|+++.+++.++++++..+ ..++.++.+|+..++... .
T Consensus 97 ~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g---~~~v~~~~~D~~~~~~~~~~~~ 173 (309)
T 2b9e_A 97 LLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG---VSCCELAEEDFLAVSPSDPRYH 173 (309)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCGGGSCTTCGGGT
T ss_pred HhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCChHhcCccccccC
Confidence 355678899999999999999999886 345699999999999999999998876 458999999997765322 5
Q ss_pred ccceEEec------cccccCCC-----------h-------HHHHHHHHhcccCCcEEEEEEecc
Q 020307 232 FVDAVHAG------AALHCWPS-----------P-------SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 232 ~fD~i~~~------~vl~h~~d-----------~-------~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
+||.|++. .++..-+| . ..+|+.+.++|+ ||+++.++-..
T Consensus 174 ~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 174 EVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp TEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred CCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 79999973 23322122 1 145777778887 99998887554
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3e-10 Score=101.24 Aligned_cols=78 Identities=12% Similarity=0.265 Sum_probs=68.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.+. +|+|+|+++.+++.+++++.. ..++.++.+|+.++++++.+||+|
T Consensus 46 l~~~~~~~VLEIG~G~G~lT~~La~~~~--~V~aVEid~~li~~a~~~~~~-----~~~v~vi~gD~l~~~~~~~~fD~I 118 (295)
T 3gru_A 46 ANLTKDDVVLEIGLGKGILTEELAKNAK--KVYVIEIDKSLEPYANKLKEL-----YNNIEIIWGDALKVDLNKLDFNKV 118 (295)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCGGGHHHHHHHHHH-----CSSEEEEESCTTTSCGGGSCCSEE
T ss_pred cCCCCcCEEEEECCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHhcc-----CCCeEEEECchhhCCcccCCccEE
Confidence 4456788999999999999999999865 999999999999999998874 568999999999988888889999
Q ss_pred Eeccc
Q 020307 237 HAGAA 241 (328)
Q Consensus 237 ~~~~v 241 (328)
+++..
T Consensus 119 v~NlP 123 (295)
T 3gru_A 119 VANLP 123 (295)
T ss_dssp EEECC
T ss_pred EEeCc
Confidence 97743
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.8e-10 Score=105.13 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=87.7
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
.++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.| .++.++++|+...+ ..++||+|++
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------------~~~~~~~~D~~~~~-~~~~fD~Ii~ 104 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWAEGILADFLLWE-PGEAFDLILG 104 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTEEEEESCGGGCC-CSSCEEEEEE
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------------CCCcEEeCChhhcC-ccCCCCEEEE
Confidence 356799999999999999999863 456999999999988665 26889999997765 3568999999
Q ss_pred cccc---c-------cCCCh-------------------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhh
Q 020307 239 GAAL---H-------CWPSP-------------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERIL 289 (328)
Q Consensus 239 ~~vl---~-------h~~d~-------------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 289 (328)
+--. . |+.+. ..+++.+.++|+|||++++..+...-
T Consensus 105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l--------------- 169 (421)
T 2ih2_A 105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWL--------------- 169 (421)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGG---------------
T ss_pred CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHh---------------
Confidence 5111 1 12221 15688999999999999999876320
Q ss_pred ccCCCCCHHHHHHHHHHCCCe
Q 020307 290 QNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 290 ~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
..-..+.+++.+.+.|+.
T Consensus 170 ---~~~~~~~lr~~l~~~~~~ 187 (421)
T 2ih2_A 170 ---VLEDFALLREFLAREGKT 187 (421)
T ss_dssp ---TCGGGHHHHHHHHHHSEE
T ss_pred ---cCccHHHHHHHHHhcCCe
Confidence 001235677777777773
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-10 Score=105.97 Aligned_cols=111 Identities=12% Similarity=0.075 Sum_probs=85.1
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCC--------------------------------------ceEEEEeCCHHHHHH
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------------SGVVALDFSENMLRQ 200 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------------~~v~g~D~s~~~~~~ 200 (328)
..++..|||.+||+|.++..++..+.+ .+++|+|+|+.+++.
T Consensus 199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~ 278 (393)
T 3k0b_A 199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI 278 (393)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence 346789999999999999888876432 469999999999999
Q ss_pred HHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecccc-ccCC---ChHHHHHHHHhcccC--CcEEEEEEecc
Q 020307 201 CYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL-HCWP---SPSNAVAEISRILRS--GGVFVGTTFLR 272 (328)
Q Consensus 201 a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl-~h~~---d~~~~l~~~~r~Lkp--gG~l~i~~~~~ 272 (328)
|++++...++ ..++.+.++|+.+++.+ .+||+|+++--. +.+. +...+.+++.+.||+ ||.+++.+.+.
T Consensus 279 Ar~Na~~~gl--~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 353 (393)
T 3k0b_A 279 AKQNAVEAGL--GDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYE 353 (393)
T ss_dssp HHHHHHHTTC--TTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECCT
T ss_pred HHHHHHHcCC--CCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 9999988774 45699999999988754 589999998321 1111 223456666677766 99999988643
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.05 E-value=4.2e-10 Score=106.45 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=88.8
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhC-------------CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSG-------------TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 221 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-------------~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~ 221 (328)
+.+...++.+|||.|||+|.++..+++.. ...+++|+|+++.+++.|+.++..++.. ..+..+.++
T Consensus 165 ~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~-~~~~~i~~g 243 (445)
T 2okc_A 165 DCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG-TDRSPIVCE 243 (445)
T ss_dssp HHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC-SSCCSEEEC
T ss_pred HHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC-cCCCCEeeC
Confidence 44555667899999999999998887642 2347999999999999999988766531 116788999
Q ss_pred cCCCCCCCCCccceEEeccccccCCCh-----------------HHHHHHHHhcccCCcEEEEEEec
Q 020307 222 DVCRLPFASGFVDAVHAGAALHCWPSP-----------------SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 222 d~~~lp~~~~~fD~i~~~~vl~h~~d~-----------------~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
|....+.. .+||+|+++-.+.+.... ..+++.+.+.|||||++.++.+.
T Consensus 244 D~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~ 309 (445)
T 2okc_A 244 DSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 309 (445)
T ss_dssp CTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred CCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence 98776643 489999998555443211 37899999999999999998875
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-09 Score=101.07 Aligned_cols=109 Identities=14% Similarity=0.095 Sum_probs=85.7
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCC--------------------------------------ceEEEEeCCHHHHHHH
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------------SGVVALDFSENMLRQC 201 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------------~~v~g~D~s~~~~~~a 201 (328)
.++..|||.+||+|.++..++..+.+ .+++|+|+|+.+++.|
T Consensus 193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A 272 (384)
T 3ldg_A 193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA 272 (384)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence 46789999999999999988875432 4699999999999999
Q ss_pred HHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecccc-ccCC---ChHHHHHHHHhcccC--CcEEEEEEec
Q 020307 202 YDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL-HCWP---SPSNAVAEISRILRS--GGVFVGTTFL 271 (328)
Q Consensus 202 ~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl-~h~~---d~~~~l~~~~r~Lkp--gG~l~i~~~~ 271 (328)
++++...++ ...+.+.++|+.+++.+ .+||+|+++--. +.+. +...+.+++.+.||+ ||.+++.++.
T Consensus 273 r~Na~~~gl--~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 345 (384)
T 3ldg_A 273 RKNAREVGL--EDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTND 345 (384)
T ss_dssp HHHHHHTTC--TTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESC
T ss_pred HHHHHHcCC--CCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECC
Confidence 999998775 45799999999988754 489999997322 1232 234566777777776 9999998864
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.7e-10 Score=102.90 Aligned_cols=111 Identities=15% Similarity=0.130 Sum_probs=86.2
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCC--------------------------------------ceEEEEeCCHHHHHH
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------------SGVVALDFSENMLRQ 200 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------------~~v~g~D~s~~~~~~ 200 (328)
..++.+|||++||+|.++..++..+.+ .+|+|+|+|+.+++.
T Consensus 193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~ 272 (385)
T 3ldu_A 193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI 272 (385)
T ss_dssp CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence 346789999999999999998876422 479999999999999
Q ss_pred HHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccccc-cC---CChHHHHHHHHhcccC--CcEEEEEEecc
Q 020307 201 CYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH-CW---PSPSNAVAEISRILRS--GGVFVGTTFLR 272 (328)
Q Consensus 201 a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~-h~---~d~~~~l~~~~r~Lkp--gG~l~i~~~~~ 272 (328)
|+.++...++ ..++.+.++|+.+++.+ .+||+|+++--.. .+ .+...+.+++.++||+ |+.+++.+.+.
T Consensus 273 Ar~Na~~~gl--~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 347 (385)
T 3ldu_A 273 ARENAEIAGV--DEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYE 347 (385)
T ss_dssp HHHHHHHHTC--GGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCT
T ss_pred HHHHHHHcCC--CCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCH
Confidence 9999988764 45799999999888754 5899999964422 22 1234567777778876 89998888643
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.8e-09 Score=96.31 Aligned_cols=148 Identities=14% Similarity=0.079 Sum_probs=99.2
Q ss_pred CCeEEEEcCCcCHHHHHHHHh-----------------CCCceEEEEeCC-----------HHHHHHHHHHHHhcCcCCC
Q 020307 162 GGLLVDVSCGSGLFSRKFAKS-----------------GTYSGVVALDFS-----------ENMLRQCYDFIKQDNTILT 213 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~-----------------~~~~~v~g~D~s-----------~~~~~~a~~~~~~~~~~~~ 213 (328)
..+|+|+||++|.++..+... .|..+|+.-|+- +.+.+.+++. .+. .
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g~--~ 127 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NGR--K 127 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TCC--C
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---ccC--C
Confidence 468999999999988877654 355788899986 4433333221 110 1
Q ss_pred CCeEEEEec---CCCCCCCCCccceEEeccccccCCChH---------------------------------------HH
Q 020307 214 SNLALVRAD---VCRLPFASGFVDAVHAGAALHCWPSPS---------------------------------------NA 251 (328)
Q Consensus 214 ~~i~~~~~d---~~~lp~~~~~fD~i~~~~vl~h~~d~~---------------------------------------~~ 251 (328)
.+..|+.+. +..-.|+++++|+|+++.+||++.+.. .+
T Consensus 128 ~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~F 207 (384)
T 2efj_A 128 IGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTF 207 (384)
T ss_dssp TTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 234555554 334458899999999999999986542 12
Q ss_pred HHHHHhcccCCcEEEEEEeccCCC--Ccc---hhhHHHHH-------------hhhccCCCCCHHHHHHHHHHCC-CeEE
Q 020307 252 VAEISRILRSGGVFVGTTFLRYTS--STS---LTGRVLRE-------------RILQNYNYLTEEEIEDLCTSCG-LTNY 312 (328)
Q Consensus 252 l~~~~r~LkpgG~l~i~~~~~~~~--~~~---~~~~~~~~-------------~~~~~~~~~~~~~l~~ll~~~G-f~~v 312 (328)
|+...+.|+|||+++++...+.+. ... .+...+.. .......+.+.++++.++++.| |++.
T Consensus 208 L~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~ 287 (384)
T 2efj_A 208 LRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEIL 287 (384)
T ss_dssp HHHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEE
Confidence 666689999999999999887654 111 22333321 0113466789999999999985 6766
Q ss_pred EE
Q 020307 313 TS 314 (328)
Q Consensus 313 ~~ 314 (328)
..
T Consensus 288 ~l 289 (384)
T 2efj_A 288 YL 289 (384)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.1e-09 Score=95.09 Aligned_cols=155 Identities=12% Similarity=0.075 Sum_probs=100.7
Q ss_pred CCCeEEEEcCCcCHHHHHHHH--------h-------CCCceEEEEeCCHHHHHHHHHHHHhcC-----------cC-CC
Q 020307 161 QGGLLVDVSCGSGLFSRKFAK--------S-------GTYSGVVALDFSENMLRQCYDFIKQDN-----------TI-LT 213 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~--------~-------~~~~~v~g~D~s~~~~~~a~~~~~~~~-----------~~-~~ 213 (328)
...+|+|+|||+|.++..+.. . .|..+|+.-|+-.+.....-+.+.... .. ..
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 357899999999998877722 2 156788999987665544433333210 00 00
Q ss_pred CCeEEEEecCCCCCCCCCccceEEeccccccCCCh--------------------------------------HHHHHHH
Q 020307 214 SNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--------------------------------------SNAVAEI 255 (328)
Q Consensus 214 ~~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~--------------------------------------~~~l~~~ 255 (328)
.-+.-+.+.+..-.|++++||+|+++.+||++.+. ..+|+..
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222334454445789999999999999998732 3468889
Q ss_pred HhcccCCcEEEEEEeccCCCC--c---------chhhHHHHHh-------------hhccCCCCCHHHHHHHHH-HCCCe
Q 020307 256 SRILRSGGVFVGTTFLRYTSS--T---------SLTGRVLRER-------------ILQNYNYLTEEEIEDLCT-SCGLT 310 (328)
Q Consensus 256 ~r~LkpgG~l~i~~~~~~~~~--~---------~~~~~~~~~~-------------~~~~~~~~~~~~l~~ll~-~~Gf~ 310 (328)
++.|+|||+++++...+.+.. . ..+...+... ..-...+.+.++++.+++ ..||+
T Consensus 212 a~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~ 291 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFA 291 (374)
T ss_dssp HHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEE
T ss_pred HHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcE
Confidence 999999999999998775421 0 1111112210 123456788999999998 59998
Q ss_pred EEEEE
Q 020307 311 NYTSK 315 (328)
Q Consensus 311 ~v~~~ 315 (328)
+....
T Consensus 292 I~~le 296 (374)
T 3b5i_A 292 IDKLV 296 (374)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77643
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.8e-09 Score=94.24 Aligned_cols=74 Identities=14% Similarity=0.256 Sum_probs=62.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCC----Cc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS----GF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~----~~ 232 (328)
+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++.. ..++.++.+|+.++++++ ++
T Consensus 25 ~~~~~~~~VLEIG~G~G~lt~~La~~~~--~V~avEid~~~~~~~~~~~~~-----~~~v~~i~~D~~~~~~~~~~~~~~ 97 (255)
T 3tqs_A 25 IHPQKTDTLVEIGPGRGALTDYLLTECD--NLALVEIDRDLVAFLQKKYNQ-----QKNITIYQNDALQFDFSSVKTDKP 97 (255)
T ss_dssp HCCCTTCEEEEECCTTTTTHHHHTTTSS--EEEEEECCHHHHHHHHHHHTT-----CTTEEEEESCTTTCCGGGSCCSSC
T ss_pred cCCCCcCEEEEEcccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHhh-----CCCcEEEEcchHhCCHHHhccCCC
Confidence 4556788999999999999999999874 999999999999999998764 468999999999887643 46
Q ss_pred cceEEe
Q 020307 233 VDAVHA 238 (328)
Q Consensus 233 fD~i~~ 238 (328)
|| |++
T Consensus 98 ~~-vv~ 102 (255)
T 3tqs_A 98 LR-VVG 102 (255)
T ss_dssp EE-EEE
T ss_pred eE-EEe
Confidence 88 444
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-09 Score=100.50 Aligned_cols=102 Identities=16% Similarity=0.194 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc---------------CcCCCCCeEEEEecCCC
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD---------------NTILTSNLALVRADVCR 225 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~---------------~~~~~~~i~~~~~d~~~ 225 (328)
++.+|||+|||+|.++..++...+..+|+++|+++.+++.++++++.. + ..++.++++|+..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~g---l~~i~v~~~Da~~ 123 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKG---EKTIVINHDDANR 123 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEES---SSEEEEEESCHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccC---CCceEEEcCcHHH
Confidence 578999999999999999999854568999999999999999999876 5 2348999999865
Q ss_pred CCC-CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 226 LPF-ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 226 lp~-~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+.. ..++||+|++.- ...+..++..+.+.|||||+++++.
T Consensus 124 ~~~~~~~~fD~I~lDP----~~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 124 LMAERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHHHSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHhccCCCCEEEeCC----CCCHHHHHHHHHHhcCCCCEEEEEe
Confidence 431 135799999532 2245788999999999999887765
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-09 Score=100.89 Aligned_cols=97 Identities=15% Similarity=0.257 Sum_probs=77.1
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCC---------
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FAS--------- 230 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~--------- 230 (328)
+.+|||+|||+|.++..+++... +|+|+|+|+.+++.|+++++..+ ..++.++.+|+.++. +..
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~~--~V~gvd~~~~ai~~a~~n~~~ng---~~~v~~~~~d~~~~~~~~~~~~~~~~l~~ 288 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNFD--RVLATEIAKPSVAAAQYNIAANH---IDNVQIIRMAAEEFTQAMNGVREFNRLQG 288 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGSS--EEEEECCCHHHHHHHHHHHHHTT---CCSEEEECCCSHHHHHHHSSCCCCTTGGG
T ss_pred CCEEEEccCCCCHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC---CCceEEEECCHHHHHHHHhhccccccccc
Confidence 57899999999999999998654 99999999999999999998766 458999999986542 111
Q ss_pred -----CccceEEeccccccCCChH--HHHHHHHhcccCCcEEEEEEec
Q 020307 231 -----GFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 231 -----~~fD~i~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
.+||+|++. |. .+..++.+.|+++|++++...+
T Consensus 289 ~~~~~~~fD~Vv~d--------PPr~g~~~~~~~~l~~~g~ivyvsc~ 328 (369)
T 3bt7_A 289 IDLKSYQCETIFVD--------PPRSGLDSETEKMVQAYPRILYISCN 328 (369)
T ss_dssp SCGGGCCEEEEEEC--------CCTTCCCHHHHHHHTTSSEEEEEESC
T ss_pred cccccCCCCEEEEC--------cCccccHHHHHHHHhCCCEEEEEECC
Confidence 379999863 32 2356677788899988887743
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3e-09 Score=98.32 Aligned_cols=104 Identities=14% Similarity=0.138 Sum_probs=83.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHhcCcCCCCC-eEEEEecCCCCC--CCCCccce
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSN-LALVRADVCRLP--FASGFVDA 235 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~-i~~~~~d~~~lp--~~~~~fD~ 235 (328)
.++.+|||++||+|.++..++....+ .+|+++|+++.+++.++++++..++ ..+ +.++.+|+..+- ...+.||+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl--~~~~v~v~~~Da~~~l~~~~~~~fD~ 128 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI--PEDRYEIHGMEANFFLRKEWGFGFDY 128 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC--CGGGEEEECSCHHHHHHSCCSSCEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCceEEEEeCCHHHHHHHhhCCCCcE
Confidence 35789999999999999999986433 4899999999999999999998764 334 899999985431 12457999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
|++.- ...+..++..+.+.|+|||+++++.
T Consensus 129 V~lDP----~g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 129 VDLDP----FGTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECC----CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence 99864 2335678999999999999887766
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.6e-09 Score=93.07 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=63.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCC-ccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG-FVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~-~fD~ 235 (328)
+...++ +|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++. ..++.++.+|+.++++++. .+|.
T Consensus 43 ~~~~~~-~VLEIG~G~G~lt~~L~~~~~--~V~avEid~~~~~~l~~~~~------~~~v~vi~~D~l~~~~~~~~~~~~ 113 (271)
T 3fut_A 43 ARPFTG-PVFEVGPGLGALTRALLEAGA--EVTAIEKDLRLRPVLEETLS------GLPVRLVFQDALLYPWEEVPQGSL 113 (271)
T ss_dssp HCCCCS-CEEEECCTTSHHHHHHHHTTC--CEEEEESCGGGHHHHHHHTT------TSSEEEEESCGGGSCGGGSCTTEE
T ss_pred cCCCCC-eEEEEeCchHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcC------CCCEEEEECChhhCChhhccCccE
Confidence 445667 999999999999999999875 99999999999999998764 2479999999988877543 6888
Q ss_pred EEecc
Q 020307 236 VHAGA 240 (328)
Q Consensus 236 i~~~~ 240 (328)
|+++-
T Consensus 114 iv~Nl 118 (271)
T 3fut_A 114 LVANL 118 (271)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 87764
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.9e-09 Score=95.15 Aligned_cols=80 Identities=16% Similarity=0.281 Sum_probs=67.2
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCC---C
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FAS---G 231 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~---~ 231 (328)
+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++... ..++.++++|+.+++ +.+ +
T Consensus 22 L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~----g~~v~~v~~d~~~l~~~l~~~g~~ 97 (301)
T 1m6y_A 22 LKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF----SDRVSLFKVSYREADFLLKTLGIE 97 (301)
T ss_dssp HCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG----TTTEEEEECCGGGHHHHHHHTTCS
T ss_pred cCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEECCHHHHHHHHHhcCCC
Confidence 5556788999999999999999999876679999999999999999988764 258999999998875 221 5
Q ss_pred ccceEEecc
Q 020307 232 FVDAVHAGA 240 (328)
Q Consensus 232 ~fD~i~~~~ 240 (328)
+||.|++..
T Consensus 98 ~~D~Vl~D~ 106 (301)
T 1m6y_A 98 KVDGILMDL 106 (301)
T ss_dssp CEEEEEEEC
T ss_pred CCCEEEEcC
Confidence 799999754
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.8e-09 Score=93.25 Aligned_cols=83 Identities=18% Similarity=0.161 Sum_probs=64.9
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCH-------HHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C-C
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE-------NMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-F 228 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~-------~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~ 228 (328)
...++.+|||+|||+|.++..+++.+. +|+|+|+|+ .+++.|+++.+..++ ..++.++++|+.++ + +
T Consensus 80 ~~~~~~~VLDlgcG~G~~a~~lA~~g~--~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~--~~ri~~~~~d~~~~l~~~ 155 (258)
T 2r6z_A 80 NHTAHPTVWDATAGLGRDSFVLASLGL--TVTAFEQHPAVACLLSDGIRRALLNPETQDT--AARINLHFGNAAEQMPAL 155 (258)
T ss_dssp TGGGCCCEEETTCTTCHHHHHHHHTTC--CEEEEECCHHHHHHHHHHHHHHHHSHHHHHH--HTTEEEEESCHHHHHHHH
T ss_pred CcCCcCeEEEeeCccCHHHHHHHHhCC--EEEEEECChhhhHHHHHHHHHHHhHHHhhCC--ccCeEEEECCHHHHHHhh
Confidence 334578999999999999999999864 999999999 999999887665442 23599999998763 3 3
Q ss_pred CC--CccceEEecccccc
Q 020307 229 AS--GFVDAVHAGAALHC 244 (328)
Q Consensus 229 ~~--~~fD~i~~~~vl~h 244 (328)
++ ++||+|++.-.+.|
T Consensus 156 ~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 156 VKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHHHCCCSEEEECCCC--
T ss_pred hccCCCccEEEECCCCCC
Confidence 33 68999999766554
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.4e-09 Score=91.31 Aligned_cols=141 Identities=16% Similarity=0.061 Sum_probs=90.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHh-------CCC-----ceEEEEeCCH---HHHH-----------HHHHHHHhcC-----
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKS-------GTY-----SGVVALDFSE---NMLR-----------QCYDFIKQDN----- 209 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~-------~~~-----~~v~g~D~s~---~~~~-----------~a~~~~~~~~----- 209 (328)
+..+|||+|+|+|..+..+.+. .|. .+++++|..+ +.+. .+++.+....
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999988776553 453 5899999876 4444 4555544310
Q ss_pred -----cC-CCCCeEEEEecCCC-CCCCC----CccceEEecc-ccccCCC--hHHHHHHHHhcccCCcEEEEEEeccCCC
Q 020307 210 -----TI-LTSNLALVRADVCR-LPFAS----GFVDAVHAGA-ALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTS 275 (328)
Q Consensus 210 -----~~-~~~~i~~~~~d~~~-lp~~~----~~fD~i~~~~-vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~ 275 (328)
+. ...++.++.+|+.+ ++..+ ..||+|+... .-..-++ -..+++.+.++|||||+|+..+ .
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys--a--- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT--S--- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC--C---
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe--C---
Confidence 00 12467889999855 44222 2799999853 2111122 2578999999999999988522 1
Q ss_pred CcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeC-cEEEEEEeC
Q 020307 276 STSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQ-SFIMFAAQK 327 (328)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~-~~~~~~a~k 327 (328)
...+++.|..+||++.+....+ .--++.+.|
T Consensus 215 ---------------------a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a~~ 246 (257)
T 2qy6_A 215 ---------------------AGFVRRGLQEAGFTMQKRKGFGRKREMLCGVM 246 (257)
T ss_dssp ---------------------BHHHHHHHHHHTEEEEEECCSTTCCCEEEEEE
T ss_pred ---------------------CHHHHHHHHHCCCEEEeCCCCCCCCceEEEEe
Confidence 1257788999999977643322 224444443
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-08 Score=92.24 Aligned_cols=151 Identities=13% Similarity=0.089 Sum_probs=103.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHh----------------CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE---e
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKS----------------GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR---A 221 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~----------------~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~---~ 221 (328)
..-+|+|+||++|.++..+... .|..+|+.-|...+.....-+.+..... ..+..|+. +
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~--~~~~~f~~gvpg 128 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEND--VDGVCFINGVPG 128 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCS--CTTCEEEEEEES
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcc--cCCCEEEEecch
Confidence 3468999999999876554332 3567899999988888777665543110 11234444 4
Q ss_pred cCCCCCCCCCccceEEeccccccCCChH---------------------------------HHHHHHHhcccCCcEEEEE
Q 020307 222 DVCRLPFASGFVDAVHAGAALHCWPSPS---------------------------------NAVAEISRILRSGGVFVGT 268 (328)
Q Consensus 222 d~~~lp~~~~~fD~i~~~~vl~h~~d~~---------------------------------~~l~~~~r~LkpgG~l~i~ 268 (328)
.+..-.|+++++|+|+++.+||++.+.. .+|+...+.|+|||+++++
T Consensus 129 SFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~ 208 (359)
T 1m6e_X 129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred hhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 4555568899999999999999986421 3488899999999999999
Q ss_pred EeccCCCC---------cchhhHHHHHh-------------hhccCCCCCHHHHHHHHHHCCC-eEEE
Q 020307 269 TFLRYTSS---------TSLTGRVLRER-------------ILQNYNYLTEEEIEDLCTSCGL-TNYT 313 (328)
Q Consensus 269 ~~~~~~~~---------~~~~~~~~~~~-------------~~~~~~~~~~~~l~~ll~~~Gf-~~v~ 313 (328)
...+.+.. ...+...|... ......+.+.++++.++++.|. ++..
T Consensus 209 ~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~ 276 (359)
T 1m6e_X 209 ILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDH 276 (359)
T ss_dssp EEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEE
T ss_pred EecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEE
Confidence 98775431 11223333211 1235568889999999999966 5544
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.6e-08 Score=85.44 Aligned_cols=113 Identities=15% Similarity=0.252 Sum_probs=87.2
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc--CcCCCCCeEEEEecCCCC-CCCCCccce
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-PFASGFVDA 235 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~l-p~~~~~fD~ 235 (328)
.+..++||-||.|.|..++.+.+..+..+++.+|+++.+++.+++.+... +....+++.++.+|.... .-..++||+
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 34578999999999999999999866679999999999999999987531 212268999999998653 344678999
Q ss_pred EEeccccccCC----ChHHHHHHHHhcccCCcEEEEEEec
Q 020307 236 VHAGAALHCWP----SPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 236 i~~~~vl~h~~----d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
|+....=..-+ -...+++.+.+.|+|||+++....+
T Consensus 161 Ii~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~s 200 (294)
T 3o4f_A 161 IISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp EEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCC
Confidence 99754211000 0147899999999999999987644
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=98.72 Aligned_cols=115 Identities=10% Similarity=0.003 Sum_probs=86.4
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCC------------------CceEEEEeCCHHHHHHHHHHHHhcCcCCCCC-
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGT------------------YSGVVALDFSENMLRQCYDFIKQDNTILTSN- 215 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~------------------~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~- 215 (328)
+.+...++.+|||.+||+|.++..+.+... ...++|+|+++.+++.|+.++..++. ..
T Consensus 163 ~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi---~~~ 239 (541)
T 2ar0_A 163 HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI---EGN 239 (541)
T ss_dssp HHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC---CCB
T ss_pred HHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCC---Ccc
Confidence 344556678999999999999988876410 13799999999999999998876653 22
Q ss_pred ----eEEEEecCCCCC-CCCCccceEEeccccccCCC--------------hHHHHHHHHhcccCCcEEEEEEecc
Q 020307 216 ----LALVRADVCRLP-FASGFVDAVHAGAALHCWPS--------------PSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 216 ----i~~~~~d~~~lp-~~~~~fD~i~~~~vl~h~~d--------------~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
..+.++|....+ ...++||+|+++--+..... ...++..+.+.|||||++.++.|..
T Consensus 240 ~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~ 315 (541)
T 2ar0_A 240 LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 315 (541)
T ss_dssp GGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred ccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence 778899986543 34578999999744332211 1368999999999999999988753
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.7e-08 Score=97.93 Aligned_cols=111 Identities=17% Similarity=0.124 Sum_probs=81.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhC------------------------------------------CCceEEEEeCCHHH
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSG------------------------------------------TYSGVVALDFSENM 197 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~------------------------------------------~~~~v~g~D~s~~~ 197 (328)
.++..|||.+||+|.++..++..+ +..+++|+|+++.+
T Consensus 189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a 268 (703)
T 3v97_A 189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV 268 (703)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence 467799999999999998887642 12479999999999
Q ss_pred HHHHHHHHHhcCcCCCCCeEEEEecCCCC--CCCCCccceEEecccc-ccCCC---hHHHHH---HHHhcccCCcEEEEE
Q 020307 198 LRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHAGAAL-HCWPS---PSNAVA---EISRILRSGGVFVGT 268 (328)
Q Consensus 198 ~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~i~~~~vl-~h~~d---~~~~l~---~~~r~LkpgG~l~i~ 268 (328)
++.|+.++...++ ...+.+.++|+.++ |...++||+|+++--. +.+.+ ...+.+ ++.+.+.|||.+++.
T Consensus 269 v~~A~~N~~~agv--~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~il 346 (703)
T 3v97_A 269 IQRARTNARLAGI--GELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLF 346 (703)
T ss_dssp HHHHHHHHHHTTC--GGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHHHcCC--CCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 9999999998875 44699999999876 3334489999998221 11222 233344 444455689999998
Q ss_pred Eecc
Q 020307 269 TFLR 272 (328)
Q Consensus 269 ~~~~ 272 (328)
+++.
T Consensus 347 t~~~ 350 (703)
T 3v97_A 347 SASP 350 (703)
T ss_dssp ESCH
T ss_pred eCCH
Confidence 8754
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=5.8e-08 Score=84.45 Aligned_cols=81 Identities=15% Similarity=0.279 Sum_probs=61.6
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.++++ . ..++.++.+|+.++++++..-+.+
T Consensus 27 ~~~~~~~~VLDiG~G~G~lt~~L~~~~-~~~v~avEid~~~~~~~~~~--~-----~~~v~~i~~D~~~~~~~~~~~~~~ 98 (249)
T 3ftd_A 27 LNIEEGNTVVEVGGGTGNLTKVLLQHP-LKKLYVIELDREMVENLKSI--G-----DERLEVINEDASKFPFCSLGKELK 98 (249)
T ss_dssp TTCCTTCEEEEEESCHHHHHHHHTTSC-CSEEEEECCCHHHHHHHTTS--C-----CTTEEEECSCTTTCCGGGSCSSEE
T ss_pred cCCCCcCEEEEEcCchHHHHHHHHHcC-CCeEEEEECCHHHHHHHHhc--c-----CCCeEEEEcchhhCChhHccCCcE
Confidence 445578899999999999999999984 35999999999999999875 2 458999999999988764221334
Q ss_pred EeccccccC
Q 020307 237 HAGAALHCW 245 (328)
Q Consensus 237 ~~~~vl~h~ 245 (328)
+..+.-.++
T Consensus 99 vv~NlPy~i 107 (249)
T 3ftd_A 99 VVGNLPYNV 107 (249)
T ss_dssp EEEECCTTT
T ss_pred EEEECchhc
Confidence 444433443
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=3.4e-08 Score=85.68 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=73.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.|+..+++..+...+.|+|++.++...... .... ..++.....+++...+..+.||+|++.
T Consensus 73 ~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~---~~~~--g~~ii~~~~~~dv~~l~~~~~DlVlsD 147 (277)
T 3evf_A 73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN---VQSL--GWNIITFKDKTDIHRLEPVKCDTLLCD 147 (277)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC---CCBT--TGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc---cCcC--CCCeEEEeccceehhcCCCCccEEEec
Confidence 46779999999999999998877444578889987543100000 0000 115556677665556778899999998
Q ss_pred cccccCCChH-------HHHHHHHhcccCC-cEEEEEEecc
Q 020307 240 AALHCWPSPS-------NAVAEISRILRSG-GVFVGTTFLR 272 (328)
Q Consensus 240 ~vl~h~~d~~-------~~l~~~~r~Lkpg-G~l~i~~~~~ 272 (328)
.+.+ ..... .+|+.+.++|||| |.+++-.+..
T Consensus 148 ~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~p 187 (277)
T 3evf_A 148 IGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAP 187 (277)
T ss_dssp CCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred CccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Confidence 7655 43321 3468889999999 9999988764
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.6e-08 Score=87.10 Aligned_cols=67 Identities=16% Similarity=0.262 Sum_probs=56.1
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCC
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 230 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 230 (328)
+...++.+|||||||+|.++..|++.+.. .+|+|+|+|+.+++.++++. ..++.++++|+.++++++
T Consensus 38 ~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-------~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 38 IRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-------GELLELHAGDALTFDFGS 106 (279)
T ss_dssp HCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-------GGGEEEEESCGGGCCGGG
T ss_pred cCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-------CCCcEEEECChhcCChhH
Confidence 45567889999999999999999998651 23999999999999999873 237999999999887653
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.5e-07 Score=76.47 Aligned_cols=101 Identities=9% Similarity=0.051 Sum_probs=75.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC--------------
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-------------- 226 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-------------- 226 (328)
+.++|||+|| |+.+..+++. ++.+|+.+|.+++..+.|++.++..++....++.++.+|+.+.
T Consensus 30 ~a~~VLEiGt--GySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 30 EAEVILEYGS--GGSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HCSEEEEESC--SHHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred CCCEEEEECc--hHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 4679999998 5677777775 2569999999999999999999886521124799999997432
Q ss_pred -C--------C-CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 227 -P--------F-ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 227 -p--------~-~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+ . ..++||+|+...- .....+..+.+.|+|||++++-.
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCEEEEETT
T ss_pred HHHHhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCeEEEEeC
Confidence 1 1 2378999998763 22366677789999999996644
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=8.2e-08 Score=93.41 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=73.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHH---hC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAK---SG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~---~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...|||||||+|-+....++ .+ -..+|+++|-|+ +...+++....+++ ..+|+++.+|++++..+ +++|+|
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~--~dkVtVI~gd~eev~LP-EKVDII 432 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEW--GSQVTVVSSDMREWVAP-EKADII 432 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTT--GGGEEEEESCTTTCCCS-SCEEEE
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccC--CCeEEEEeCcceeccCC-cccCEE
Confidence 345799999999988444433 32 223689999997 56677777777765 77899999999988765 579999
Q ss_pred Eeccc---cccCCChHHHHHHHHhcccCCcEEE
Q 020307 237 HAGAA---LHCWPSPSNAVAEISRILRSGGVFV 266 (328)
Q Consensus 237 ~~~~v---l~h~~d~~~~l~~~~r~LkpgG~l~ 266 (328)
++-+. +-+-.-| ..|....|.|||||+++
T Consensus 433 VSEwMG~fLl~E~ml-evL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 433 VSELLGSFADNELSP-ECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp ECCCCBTTBGGGCHH-HHHHHHGGGEEEEEEEE
T ss_pred EEEcCcccccccCCH-HHHHHHHHhcCCCcEEc
Confidence 97432 1111223 57888899999999863
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.2e-08 Score=91.74 Aligned_cols=74 Identities=12% Similarity=0.159 Sum_probs=63.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc--CcCCCCCeEEEEecCCCC-CC-CCCccceE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-PF-ASGFVDAV 236 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~l-p~-~~~~fD~i 236 (328)
++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.|++++... + ..++.++++|+.+. +. ++++||+|
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g~--~V~~VD~s~~~l~~Ar~N~~~~~~g---l~~i~~i~~Da~~~L~~~~~~~fDvV 167 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKAS--QGIYIERNDETAVAARHNIPLLLNE---GKDVNILTGDFKEYLPLIKTFHPDYI 167 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHSCT---TCEEEEEESCGGGSHHHHHHHCCSEE
T ss_pred CCCEEEEeCCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHhHHHhccC---CCcEEEEECcHHHhhhhccCCCceEE
Confidence 478999999999999999998865 9999999999999999999875 4 35799999999764 32 23589999
Q ss_pred Eec
Q 020307 237 HAG 239 (328)
Q Consensus 237 ~~~ 239 (328)
++.
T Consensus 168 ~lD 170 (410)
T 3ll7_A 168 YVD 170 (410)
T ss_dssp EEC
T ss_pred EEC
Confidence 985
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.1e-07 Score=86.37 Aligned_cols=113 Identities=15% Similarity=0.036 Sum_probs=85.6
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhC---CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC--C-CCCCc
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSG---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--P-FASGF 232 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p-~~~~~ 232 (328)
..++.+|||.+||+|.++..+.+.. ....++|+|+++.++..|+.++..++.. ..++.+.++|.... | .....
T Consensus 219 ~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~-~~~~~I~~gDtL~~d~p~~~~~~ 297 (542)
T 3lkd_A 219 DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP-IENQFLHNADTLDEDWPTQEPTN 297 (542)
T ss_dssp TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC-GGGEEEEESCTTTSCSCCSSCCC
T ss_pred CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC-cCccceEecceeccccccccccc
Confidence 3467899999999999998888762 2458999999999999999988776531 14678999998655 4 45678
Q ss_pred cceEEecccc--cc-----------------CC---Ch-HHHHHHHHhccc-CCcEEEEEEecc
Q 020307 233 VDAVHAGAAL--HC-----------------WP---SP-SNAVAEISRILR-SGGVFVGTTFLR 272 (328)
Q Consensus 233 fD~i~~~~vl--~h-----------------~~---d~-~~~l~~~~r~Lk-pgG~l~i~~~~~ 272 (328)
||+|+++=-+ .. ++ +. -.++..+.+.|| |||++.++.|..
T Consensus 298 fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g 361 (542)
T 3lkd_A 298 FDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG 361 (542)
T ss_dssp BSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred ccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence 9999986111 00 11 11 247999999999 999999988753
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-07 Score=90.77 Aligned_cols=115 Identities=15% Similarity=0.008 Sum_probs=82.6
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCC---------------CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEE
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGT---------------YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 219 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~---------------~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~ 219 (328)
+.+...++ +|||.+||+|.++..+.+... ...++|+|+++.+++.|+.++..+++ ..++.+.
T Consensus 239 ~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi--~~~i~i~ 315 (544)
T 3khk_A 239 EMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGI--DFNFGKK 315 (544)
T ss_dssp HHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTC--CCBCCSS
T ss_pred HHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCC--Cccccee
Confidence 34444444 999999999999887754311 34799999999999999998877664 3344447
Q ss_pred EecCCCCC-CCCCccceEEecccccc-------------------------CCC---h-HHHHHHHHhcccCCcEEEEEE
Q 020307 220 RADVCRLP-FASGFVDAVHAGAALHC-------------------------WPS---P-SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 220 ~~d~~~lp-~~~~~fD~i~~~~vl~h-------------------------~~d---~-~~~l~~~~r~LkpgG~l~i~~ 269 (328)
++|....+ +...+||+|+++=-+.. ++. . -.++..+.+.|||||++.++.
T Consensus 316 ~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVl 395 (544)
T 3khk_A 316 NADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLL 395 (544)
T ss_dssp SCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEe
Confidence 78865444 45678999999622211 111 1 268999999999999999988
Q ss_pred ecc
Q 020307 270 FLR 272 (328)
Q Consensus 270 ~~~ 272 (328)
|+.
T Consensus 396 P~g 398 (544)
T 3khk_A 396 ANG 398 (544)
T ss_dssp ETH
T ss_pred cch
Confidence 753
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-07 Score=92.42 Aligned_cols=101 Identities=10% Similarity=0.099 Sum_probs=72.5
Q ss_pred CCeEEEEcCCcCHHHHHHHH----hC---------CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC
Q 020307 162 GGLLVDVSCGSGLFSRKFAK----SG---------TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 228 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~----~~---------~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 228 (328)
+..|||||||+|-++....+ .+ ...+|+++|.|+.+....+.+.. .++ ...|.++.+|++++..
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~--~d~VtVI~gd~eev~l 486 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTW--KRRVTIIESDMRSLPG 486 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTT--TTCSEEEESCGGGHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCC--CCeEEEEeCchhhccc
Confidence 45899999999998643222 12 23489999999987766665544 343 5679999999998765
Q ss_pred C-----CCccceEEeccccccCCCh---HHHHHHHHhcccCCcEEE
Q 020307 229 A-----SGFVDAVHAGAALHCWPSP---SNAVAEISRILRSGGVFV 266 (328)
Q Consensus 229 ~-----~~~fD~i~~~~vl~h~~d~---~~~l~~~~r~LkpgG~l~ 266 (328)
+ .+++|+|++-.. ..+.+- ...|..+.+.|||||+++
T Consensus 487 p~~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 487 IAKDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence 3 468999998553 223222 357888899999999764
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.2e-08 Score=87.29 Aligned_cols=66 Identities=9% Similarity=0.218 Sum_probs=52.9
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 229 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 229 (328)
+...++.+|||||||+|.++. +.+ +...+|+|+|+++.+++.+++++.. ..++.++.+|+.+++++
T Consensus 17 ~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~-----~~~v~~i~~D~~~~~~~ 82 (252)
T 1qyr_A 17 INPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFL-----GPKLTIYQQDAMTFNFG 82 (252)
T ss_dssp HCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTT-----GGGEEEECSCGGGCCHH
T ss_pred cCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhcc-----CCceEEEECchhhCCHH
Confidence 445677899999999999999 654 4422399999999999999886543 34799999999888754
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.57 E-value=4.6e-08 Score=85.31 Aligned_cols=105 Identities=17% Similarity=0.034 Sum_probs=70.1
Q ss_pred hccccCC--CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC----cCC--CCCeEEEEecCCC-C
Q 020307 156 YFKSAQG--GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN----TIL--TSNLALVRADVCR-L 226 (328)
Q Consensus 156 ~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~----~~~--~~~i~~~~~d~~~-l 226 (328)
.+...++ .+|||+|||+|..+..++..+. +|+++|+++.+.+.+++.++... ... ..++.++++|..+ +
T Consensus 81 al~l~~g~~~~VLDl~~G~G~dal~lA~~g~--~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L 158 (258)
T 2oyr_A 81 AVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL 158 (258)
T ss_dssp HTTCBTTBCCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHS
T ss_pred HhcccCCCCCEEEEcCCcCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHH
Confidence 3444556 8999999999999999999865 89999999988777666554211 000 1468999999865 3
Q ss_pred CCCCCccceEEeccccccCCChHHHHHHHHhcccCCc
Q 020307 227 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 263 (328)
Q Consensus 227 p~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG 263 (328)
+...++||+|++.-...+ ......+++..++|++.+
T Consensus 159 ~~~~~~fDvV~lDP~y~~-~~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 159 TDITPRPQVVYLDPMFPH-KQKSALVKKEMRVFQSLV 194 (258)
T ss_dssp TTCSSCCSEEEECCCCCC-CCC-----HHHHHHHHHS
T ss_pred HhCcccCCEEEEcCCCCC-cccchHHHHHHHHHHHhh
Confidence 322247999999876655 333345566666666544
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2.6e-06 Score=77.30 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=85.7
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..+|.++||+||++|.++..+.+++. .|++||+.+ +...... .+++.++++|+.....+.+.||+|+|
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~--~V~aVD~~~-l~~~l~~---------~~~V~~~~~d~~~~~~~~~~~D~vvs 276 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNM--WVYSVDNGP-MAQSLMD---------TGQVTWLREDGFKFRPTRSNISWMVC 276 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTC--EEEEECSSC-CCHHHHT---------TTCEEEECSCTTTCCCCSSCEEEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCC--EEEEEEhhh-cChhhcc---------CCCeEEEeCccccccCCCCCcCEEEE
Confidence 45789999999999999999999875 999999864 2222221 67999999999887767788999999
Q ss_pred ccccccCCChHHHHHHHHhcccCC---cEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 239 GAALHCWPSPSNAVAEISRILRSG---GVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~Lkpg---G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
..+ .+|...+..+.+.|..+ +.++..-.... .....+.. ..+.+...++..||..
T Consensus 277 Dm~----~~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk-----~~~~~l~~---------~~~~i~~~l~~~g~~~ 334 (375)
T 4auk_A 277 DMV----EKPAKVAALMAQWLVNGWCRETIFNLKLPMK-----KRYEEVSH---------NLAYIQAQLDEHGINA 334 (375)
T ss_dssp CCS----SCHHHHHHHHHHHHHTTSCSEEEEEEECCSS-----SHHHHHHH---------HHHHHHHHHHHTTCCE
T ss_pred cCC----CChHHhHHHHHHHHhccccceEEEEEEeccc-----chHHHHHH---------HHHHHHHHHHhcCcch
Confidence 765 45777777777777665 33333222111 00111111 1246778899999964
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-06 Score=79.49 Aligned_cols=130 Identities=12% Similarity=0.034 Sum_probs=96.1
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcC---CCCCeEEEEecCCCCC-CCCC
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---LTSNLALVRADVCRLP-FASG 231 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~---~~~~i~~~~~d~~~lp-~~~~ 231 (328)
.+...+|.+|||+.+|.|.=+.+++..+....++++|+++.-++..++++...+.. ...++.+...|...++ ...+
T Consensus 143 ~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~ 222 (359)
T 4fzv_A 143 ALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGD 222 (359)
T ss_dssp HHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTT
T ss_pred HhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccc
Confidence 36678899999999999999999998877678999999999999999888765421 1247888888887654 3457
Q ss_pred ccceEEec----c----ccccCCCh----------------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHH
Q 020307 232 FVDAVHAG----A----ALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR 285 (328)
Q Consensus 232 ~fD~i~~~----~----vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 285 (328)
.||.|++. . ++..-++. ..+|..+.+.|||||+|+.+|-......+..+...+.
T Consensus 223 ~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV~~~L 300 (359)
T 4fzv_A 223 TYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAI 300 (359)
T ss_dssp CEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHHHHHH
T ss_pred cCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHHHHHH
Confidence 89999963 2 22111111 2578889999999999999997766555554444433
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.3e-07 Score=82.12 Aligned_cols=108 Identities=17% Similarity=0.109 Sum_probs=72.0
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|||+|||.|.|+..+++..+...|+|+|++..+...+... ... ..++.....+.....+....+|+|+|
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~----g~~ii~~~~~~dv~~l~~~~~DvVLS 162 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTL----GWNLIRFKDKTDVFNMEVIPGDTLLC 162 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBT----TGGGEEEECSCCGGGSCCCCCSEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccC----CCceEEeeCCcchhhcCCCCcCEEEe
Confidence 3467799999999999999988765555789999986532211100 000 12333444333323345788999999
Q ss_pred ccccccCCChH-------HHHHHHHhcccCC--cEEEEEEecc
Q 020307 239 GAALHCWPSPS-------NAVAEISRILRSG--GVFVGTTFLR 272 (328)
Q Consensus 239 ~~vl~h~~d~~-------~~l~~~~r~Lkpg--G~l~i~~~~~ 272 (328)
..... ...+. .+|.-+.++|+|| |.|++-.+..
T Consensus 163 DmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~p 204 (282)
T 3gcz_A 163 DIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCP 204 (282)
T ss_dssp CCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCC
T ss_pred cCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecC
Confidence 87765 44431 3567778999999 9999988763
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.9e-06 Score=85.16 Aligned_cols=112 Identities=14% Similarity=0.105 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCC---CceEEEEeCCHHHHHHH--HHHHHhcCc-CCCCCeEEEEecCCCC-CCCCCcc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGT---YSGVVALDFSENMLRQC--YDFIKQDNT-ILTSNLALVRADVCRL-PFASGFV 233 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~---~~~v~g~D~s~~~~~~a--~~~~~~~~~-~~~~~i~~~~~d~~~l-p~~~~~f 233 (328)
++.+|||.|||+|.++..+++..+ ..+++|+|+++.+++.| +..+....+ .......+...|+... +...+.|
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 477999999999999999988753 35799999999999999 433322111 0012235555566542 2345789
Q ss_pred ceEEecccccc-CC---------------------------C-hHHHHHHHHhcccCCcEEEEEEecc
Q 020307 234 DAVHAGAALHC-WP---------------------------S-PSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 234 D~i~~~~vl~h-~~---------------------------d-~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
|+|+++=-.-. .. + ...+++.+.+.|+|||++.+..|..
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s 468 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ 468 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence 99999632210 11 1 1246788999999999999999764
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.3e-06 Score=75.42 Aligned_cols=130 Identities=9% Similarity=0.074 Sum_probs=91.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhC-----CCceEEEEeCCHH--------------------------HHHHHHHHHHhc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSEN--------------------------MLRQCYDFIKQD 208 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~g~D~s~~--------------------------~~~~a~~~~~~~ 208 (328)
...+.|||+|+..|..+..++... ++.+++++|..+. .++.++++++..
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 346799999999999888776542 3668999996421 466788888887
Q ss_pred CcCCCCCeEEEEecCCC-CC-CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH
Q 020307 209 NTILTSNLALVRADVCR-LP-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE 286 (328)
Q Consensus 209 ~~~~~~~i~~~~~d~~~-lp-~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 286 (328)
++. ..++.++.+|+.+ +| ++.++||+|+...-.. ......|..+.+.|+|||++++-+... + . .
T Consensus 185 gl~-~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y--~~~~~~Le~~~p~L~pGGiIv~DD~~~------~-~----G 250 (282)
T 2wk1_A 185 DLL-DEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY--ESTWDTLTNLYPKVSVGGYVIVDDYMM------C-P----P 250 (282)
T ss_dssp TCC-STTEEEEESCHHHHSTTCCCCCEEEEEECCCSH--HHHHHHHHHHGGGEEEEEEEEESSCTT------C-H----H
T ss_pred CCC-cCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc--ccHHHHHHHHHhhcCCCEEEEEcCCCC------C-H----H
Confidence 641 2789999999843 44 3457899999876321 123577999999999999998855311 0 0 0
Q ss_pred hhhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 287 RILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 287 ~~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
...-+.+.+++.|+...
T Consensus 251 ---------~~~Av~Ef~~~~~i~~~ 267 (282)
T 2wk1_A 251 ---------CKDAVDEYRAKFDIADE 267 (282)
T ss_dssp ---------HHHHHHHHHHHTTCCSC
T ss_pred ---------HHHHHHHHHHhcCCceE
Confidence 13467777888887543
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=3.7e-06 Score=76.65 Aligned_cols=108 Identities=12% Similarity=0.146 Sum_probs=78.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC-----cCCCCCeEEEEecCCCC----CCCCC
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-----TILTSNLALVRADVCRL----PFASG 231 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-----~~~~~~i~~~~~d~~~l----p~~~~ 231 (328)
++++||-||.|.|..++.+.+.. ..+++.+|+++.+++.+++.+.... .+..+++.++.+|.... +-..+
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLK-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTC-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhcC-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 46899999999999999999875 4789999999999999999864311 00124688999997432 11346
Q ss_pred ccceEEecccccc-CCCh---------HHHHHHHHhcccCCcEEEEEE
Q 020307 232 FVDAVHAGAALHC-WPSP---------SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 232 ~fD~i~~~~vl~h-~~d~---------~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+||+|+....=.. -++| ..+++.+.+.|+|||+++...
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 7999997532111 1222 357888999999999998765
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=2.2e-06 Score=74.89 Aligned_cols=107 Identities=12% Similarity=0.118 Sum_probs=69.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+||++|.|+..+.+..+-..|+|+|+...+...... .... ..++.....+..-..+..+.+|+|++.
T Consensus 80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~----~~~iv~~~~~~di~~l~~~~~DlVlsD 154 (300)
T 3eld_A 80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTL----GWNIVKFKDKSNVFTMPTEPSDTLLCD 154 (300)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBT----TGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-cccc----CCceEEeecCceeeecCCCCcCEEeec
Confidence 46889999999999999999986444578999997542110000 0000 112333333222223446789999997
Q ss_pred cccccCCCh-------HHHHHHHHhcccCC-cEEEEEEecc
Q 020307 240 AALHCWPSP-------SNAVAEISRILRSG-GVFVGTTFLR 272 (328)
Q Consensus 240 ~vl~h~~d~-------~~~l~~~~r~Lkpg-G~l~i~~~~~ 272 (328)
..-. ...+ ..+|.-+.++|+|| |.|++-.+..
T Consensus 155 ~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~ 194 (300)
T 3eld_A 155 IGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAP 194 (300)
T ss_dssp CCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESST
T ss_pred CcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 6655 4443 24577778999999 9999988763
|
| >2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=8.2e-07 Score=59.87 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=37.7
Q ss_pred cCcccccCCCchhhccCCCCccccccccCceeeCCCCccccCccceeeeeccc
Q 020307 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110 (328)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 110 (328)
.++++||.|+++|...... +.+.|+.|+..|++++|++.++...
T Consensus 8 LeiL~CP~ck~~L~~~~~~---------g~LvC~~c~~~YPI~dGIPvmL~~E 51 (67)
T 2jny_A 8 LEVLACPKDKGPLRYLESE---------QLLVNERLNLAYRIDDGIPVLLIDE 51 (67)
T ss_dssp TCCCBCTTTCCBCEEETTT---------TEEEETTTTEEEEEETTEECCCSSC
T ss_pred HHHhCCCCCCCcCeEeCCC---------CEEEcCCCCccccCCCCEeeeChhH
Confidence 4789999999998765432 6899999999999999999998763
|
| >2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.12 E-value=9.5e-07 Score=59.83 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=37.6
Q ss_pred cCcccccCCCchhhccCCCCccccccccCceeeCCCCccccCccceeeeeccc
Q 020307 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110 (328)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 110 (328)
.++++||.|+++|...... +.+.|+.|+..|++++|++.++...
T Consensus 6 L~iL~CP~ck~~L~~~~~~---------~~LiC~~cg~~YPI~dGIPvmL~~E 49 (68)
T 2jr6_A 6 LDILVCPVTKGRLEYHQDK---------QELWSRQAKLAYPIKDGIPYMLENE 49 (68)
T ss_dssp SCCCBCSSSCCBCEEETTT---------TEEEETTTTEEEEEETTEECCCTTT
T ss_pred hhheECCCCCCcCeEeCCC---------CEEEcCCCCcEecCCCCeeeeChhh
Confidence 4789999999998765432 6899999999999999999998763
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=5e-07 Score=100.95 Aligned_cols=147 Identities=18% Similarity=0.165 Sum_probs=70.0
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCC-----CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-CCCCCccc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGT-----YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVD 234 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~-----~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD 234 (328)
+..+|||||.|+|..+..+.+... ..+++..|+|+...+.++++++.. ++.....|.... ++..++||
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~------di~~~~~d~~~~~~~~~~~yd 1313 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL------HVTQGQWDPANPAPGSLGKAD 1313 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH------TEEEECCCSSCCCC-----CC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc------ccccccccccccccCCCCcee
Confidence 467999999999987665544321 247899999998888887776532 222222233332 34566899
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
+|++.+++|-.++....|++++++|||||++++.+.......... ..++...........+.++|..+|+.+||..+..
T Consensus 1314 lvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~-~~~~~~~~r~~~~~~~~~~w~~~l~~~gf~~~~~ 1392 (2512)
T 2vz8_A 1314 LLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGHPLGEM-VGFLTSPEQGGRHLLSQDQWESLFAGASLHLVAL 1392 (2512)
T ss_dssp EEEEECC--------------------CCEEEEEEC---------------------------CTTTTSSTTTTEEEEEE
T ss_pred EEEEcccccccccHHHHHHHHHHhcCCCcEEEEEecccccccccc-ccccccccccCCcccCHHHHHHHHHhCCCceeee
Confidence 999999998888999999999999999999998775421100000 0011110001223567788889999999987764
|
| >2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50} | Back alignment and structure |
|---|
Probab=98.11 E-value=1e-06 Score=60.07 Aligned_cols=44 Identities=16% Similarity=0.335 Sum_probs=37.8
Q ss_pred cCcccccCCCchhhccCCCCccccccccCceeeCCCCccccCccceeeeeccc
Q 020307 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110 (328)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 110 (328)
.++++||.|+++|...... +.+.|+.|+..|++++|++.++...
T Consensus 6 L~iL~CP~ck~~L~~~~~~---------~~LiC~~cg~~YPI~dGIPvmL~~E 49 (70)
T 2js4_A 6 LDILVCPVCKGRLEFQRAQ---------AELVCNADRLAFPVRDGVPIMLEAE 49 (70)
T ss_dssp CCCCBCTTTCCBEEEETTT---------TEEEETTTTEEEEEETTEECCCGGG
T ss_pred hhheECCCCCCcCEEeCCC---------CEEEcCCCCceecCCCCeeeeChhh
Confidence 4789999999998765432 6899999999999999999998873
|
| >2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=9.2e-07 Score=59.91 Aligned_cols=44 Identities=18% Similarity=0.443 Sum_probs=37.6
Q ss_pred cCcccccCCCchhhccCCCCccccccccCceeeCCCCccccCccceeeeeccc
Q 020307 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110 (328)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 110 (328)
.++++||.|+++|..... .+.+.|+.|+..|++++|++.++...
T Consensus 6 L~iL~CP~ck~~L~~~~~---------~~~LiC~~cg~~YPI~dGIPvmL~~E 49 (68)
T 2hf1_A 6 LEILVCPLCKGPLVFDKS---------KDELICKGDRLAFPIKDGIPMMLESE 49 (68)
T ss_dssp EEECBCTTTCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCGGG
T ss_pred hhheECCCCCCcCeEeCC---------CCEEEcCCCCcEecCCCCeeeeChhh
Confidence 478999999999876543 26899999999999999999998763
|
| >2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.1e-06 Score=59.66 Aligned_cols=44 Identities=20% Similarity=0.402 Sum_probs=37.5
Q ss_pred cCcccccCCCchhhccCCCCccccccccCceeeCCCCccccCccceeeeeccc
Q 020307 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110 (328)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 110 (328)
.+.++||.|+++|...... +.+.|+.|+..|++++|+..++...
T Consensus 6 LeiL~CP~ck~~L~~~~~~---------~~LiC~~cg~~YPI~dGIPvmL~~e 49 (69)
T 2pk7_A 6 LDILACPICKGPLKLSADK---------TELISKGAGLAYPIRDGIPVMLESE 49 (69)
T ss_dssp GGTCCCTTTCCCCEECTTS---------SEEEETTTTEEEEEETTEECCCGGG
T ss_pred HhheeCCCCCCcCeEeCCC---------CEEEcCCCCcEecCcCCeeeeChhh
Confidence 4789999999998764432 6899999999999999999998763
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.08 E-value=7.7e-06 Score=71.39 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=62.3
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CCC
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FAS 230 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~ 230 (328)
.+...+++.+||.+||.|..+..+++. +.+|+|+|.++.+++.|++ +. ..++.++.+++.+++ ...
T Consensus 17 ~L~~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~------~~rv~lv~~~f~~l~~~L~~~g~ 87 (285)
T 1wg8_A 17 LLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LH------LPGLTVVQGNFRHLKRHLAALGV 87 (285)
T ss_dssp HHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TC------CTTEEEEESCGGGHHHHHHHTTC
T ss_pred hhCCCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hc------cCCEEEEECCcchHHHHHHHcCC
Confidence 456678899999999999999999998 4599999999999999988 54 248999999998764 122
Q ss_pred CccceEEec
Q 020307 231 GFVDAVHAG 239 (328)
Q Consensus 231 ~~fD~i~~~ 239 (328)
+++|.|++.
T Consensus 88 ~~vDgIL~D 96 (285)
T 1wg8_A 88 ERVDGILAD 96 (285)
T ss_dssp SCEEEEEEE
T ss_pred CCcCEEEeC
Confidence 579999974
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.98 E-value=7e-06 Score=64.18 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=58.9
Q ss_pred CCCeEEEEcCCcC-HHHHHHHH-hCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCC-CccceEE
Q 020307 161 QGGLLVDVSCGSG-LFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS-GFVDAVH 237 (328)
Q Consensus 161 ~~~~vLDiGcG~G-~~~~~l~~-~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~-~~fD~i~ 237 (328)
++.+|||||||+| ..+..|++ .+. +|+++|+++..+ .+++.|+.+..... ..||+|.
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~~g~--~V~atDInp~Av------------------~~v~dDiF~P~~~~Y~~~DLIY 94 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKHSKV--DLVLTDIKPSHG------------------GIVRDDITSPRMEIYRGAALIY 94 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHHSCC--EEEEECSSCSST------------------TEECCCSSSCCHHHHTTEEEEE
T ss_pred CCCcEEEEccCCChHHHHHHHHhCCC--eEEEEECCcccc------------------ceEEccCCCCcccccCCcCEEE
Confidence 4579999999999 69999997 555 899999987543 27888987733211 4799998
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
+..- -++....+.++.+.+ |.-+++......
T Consensus 95 sirP---P~El~~~i~~lA~~v--~adliI~pL~~E 125 (153)
T 2k4m_A 95 SIRP---PAEIHSSLMRVADAV--GARLIIKPLTGE 125 (153)
T ss_dssp EESC---CTTTHHHHHHHHHHH--TCEEEEECBTTB
T ss_pred EcCC---CHHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence 7553 122334444444432 566777665443
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.88 E-value=8.3e-05 Score=64.74 Aligned_cols=107 Identities=15% Similarity=0.194 Sum_probs=73.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe-cCCCCCCCCCccceEEe
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD~i~~ 238 (328)
.++.+|||+||++|.|+...+.......|+|+|+...-.+.= ....+.+ -.-+.+..+ |+..++. ..+|+|+|
T Consensus 93 ~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~---w~lV~~~~~~Dv~~l~~--~~~D~ivc 166 (321)
T 3lkz_A 93 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYG---WNIVTMKSGVDVFYRPS--ECCDTLLC 166 (321)
T ss_dssp CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTT---GGGEEEECSCCTTSSCC--CCCSEEEE
T ss_pred CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcC---CcceEEEeccCHhhCCC--CCCCEEEE
Confidence 467799999999999999887764445799999965411000 0000011 123777777 8777663 67999999
Q ss_pred ccccccCCChH-------HHHHHHHhcccCC-cEEEEEEeccC
Q 020307 239 GAALHCWPSPS-------NAVAEISRILRSG-GVFVGTTFLRY 273 (328)
Q Consensus 239 ~~vl~h~~d~~-------~~l~~~~r~Lkpg-G~l~i~~~~~~ 273 (328)
.-. +--++|. .+|.-+.+.|++| |-+++-.+..+
T Consensus 167 Dig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY 208 (321)
T 3lkz_A 167 DIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPY 208 (321)
T ss_dssp CCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred ECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCC
Confidence 877 7777764 3566667889998 88988887664
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00019 Score=69.02 Aligned_cols=140 Identities=18% Similarity=0.163 Sum_probs=92.7
Q ss_pred hHHHHHHhhHHhhhhc----CCCCCcchh-----hhccccCCCeEEEEcCCcCHHHHHHHHh----C---------CCce
Q 020307 130 FVSFLYERGWRQNFNR----SGFPGPDEE-----EYFKSAQGGLLVDVSCGSGLFSRKFAKS----G---------TYSG 187 (328)
Q Consensus 130 ~~~~~~~~~~~~~~~~----~~~~~~~~~-----~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~---------~~~~ 187 (328)
.+...|+...++.... ..++.|... +.+.+.++.+|+|-+||+|.|+..+.+. . ....
T Consensus 177 ~lG~~yE~ll~~~~~~~g~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~ 256 (530)
T 3ufb_A 177 TLSRLYETMLREMRDAAGDSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESS 256 (530)
T ss_dssp HHHHHHHHHHHHHTTSSSSCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhcCcCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhh
Confidence 4455666655443211 124555443 5666777889999999999998776543 1 1236
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC----CCCccceEEeccccc---------cCC------Ch
Q 020307 188 VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDAVHAGAALH---------CWP------SP 248 (328)
Q Consensus 188 v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~i~~~~vl~---------h~~------d~ 248 (328)
++|+|+++.+...|+-++-.++ .....+..+|....|. ....||+|+++=-+. .++ +.
T Consensus 257 i~G~E~~~~~~~la~mNl~lhg---~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~ 333 (530)
T 3ufb_A 257 IFGGEAKSLPYLLVQMNLLLHG---LEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAET 333 (530)
T ss_dssp EEEECCSHHHHHHHHHHHHHHT---CSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBH
T ss_pred hhhhhccHHHHHHHHHHHHhcC---CccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchh
Confidence 9999999999999998776665 3445677788755442 235799999873321 111 11
Q ss_pred -HHHHHHHHhccc-------CCcEEEEEEecc
Q 020307 249 -SNAVAEISRILR-------SGGVFVGTTFLR 272 (328)
Q Consensus 249 -~~~l~~~~r~Lk-------pgG~l~i~~~~~ 272 (328)
..++..+.+.|| |||++.++.|..
T Consensus 334 ~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g 365 (530)
T 3ufb_A 334 AMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNG 365 (530)
T ss_dssp HHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHH
T ss_pred HHHHHHHHHHHhhhhhhccCCCceEEEEecch
Confidence 246777888776 799999998753
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00025 Score=64.00 Aligned_cols=152 Identities=13% Similarity=0.142 Sum_probs=101.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCc-----C-------------CCCCeEE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-----I-------------LTSNLAL 218 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-----~-------------~~~~i~~ 218 (328)
+...+...|+.+|||.......+...+++..++-+|. ++.++.-++.+...+. . ...+..+
T Consensus 93 l~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 171 (334)
T 1rjd_A 93 LVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKL 171 (334)
T ss_dssp HHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEE
T ss_pred HHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEE
Confidence 4334567999999999998888887656667888887 7787777776665310 0 0367899
Q ss_pred EEecCCCCCC---------CCCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCC-CCcch---hhHH
Q 020307 219 VRADVCRLPF---------ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT-SSTSL---TGRV 283 (328)
Q Consensus 219 ~~~d~~~lp~---------~~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~-~~~~~---~~~~ 283 (328)
+.+|+.+... ..+...++++-.++.+++.. ..+++.+.+.. |+|.+++.+..... ...++ +...
T Consensus 172 v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m~~~ 250 (334)
T 1rjd_A 172 AACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIMQSN 250 (334)
T ss_dssp EECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHHHHH
T ss_pred EecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHHHHH
Confidence 9999976421 23457888888999998644 46777777766 78887766655431 11122 1122
Q ss_pred HHH-h-h--hccCCCCCHHHHHHHHHHCCCe
Q 020307 284 LRE-R-I--LQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 284 ~~~-~-~--~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
+.. . . .....+.+.++..+.|.++||+
T Consensus 251 l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 251 LKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred hhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 222 1 1 1223467999999999999997
|
| >2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.81 E-value=8.7e-06 Score=52.91 Aligned_cols=42 Identities=26% Similarity=0.616 Sum_probs=36.1
Q ss_pred cCcccccCCCchhhccCCCCccccccccCceeeC--CCCccccCccceeeeeccc
Q 020307 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCR--KCDKTYSSKDNYLDLTVIS 110 (328)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~g~~~~~~~~ 110 (328)
.+.++||.|+++|.... +.+.|+ .|+..|++++|+..++...
T Consensus 8 L~iL~CP~c~~~L~~~~-----------~~L~C~~~~c~~~YPI~dGIPvlL~~e 51 (56)
T 2kpi_A 8 LEILACPACHAPLEERD-----------AELICTGQDCGLAYPVRDGIPVLLVDE 51 (56)
T ss_dssp TTSCCCSSSCSCEEEET-----------TEEEECSSSCCCEEEEETTEECCCTTT
T ss_pred HhheeCCCCCCcceecC-----------CEEEcCCcCCCcEEeeECCEeeeCHHH
Confidence 47899999999986643 689999 9999999999999998653
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00018 Score=60.64 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=73.5
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe-cCCCCCCCCCccceEE
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVDAVH 237 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD~i~ 237 (328)
..++.+|||+||++|.++...+.......|+|+|+-..-.+.= ......| -..+.|..+ |+..++ ..++|.|+
T Consensus 76 l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~g---wn~v~fk~gvDv~~~~--~~~~Dtll 149 (267)
T 3p8z_A 76 VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYG---WNIVKLMSGKDVFYLP--PEKCDTLL 149 (267)
T ss_dssp SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTT---TTSEEEECSCCGGGCC--CCCCSEEE
T ss_pred CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcC---cCceEEEeccceeecC--CccccEEE
Confidence 3467899999999999999888775445799999965422100 0000111 256889998 976665 36799999
Q ss_pred eccccccCCChH-------HHHHHHHhcccCCcEEEEEEeccCC
Q 020307 238 AGAALHCWPSPS-------NAVAEISRILRSGGVFVGTTFLRYT 274 (328)
Q Consensus 238 ~~~vl~h~~d~~-------~~l~~~~r~LkpgG~l~i~~~~~~~ 274 (328)
|.-. +--++|. ++|.-+.+.|++ |-+++-....+.
T Consensus 150 cDIg-eSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~ 191 (267)
T 3p8z_A 150 CDIG-ESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM 191 (267)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred EecC-CCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence 9765 3445553 356666788998 788887776653
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=2.8e-05 Score=66.55 Aligned_cols=104 Identities=19% Similarity=0.155 Sum_probs=65.1
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCe---EEEEe-cCCCCCCCCCccc
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL---ALVRA-DVCRLPFASGFVD 234 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i---~~~~~-d~~~lp~~~~~fD 234 (328)
..++.+|||+||+.|.++..+++.-.-..|.|.++..+. . +..... ...++ .|.++ |+.+++ ...+|
T Consensus 71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-----~~P~~~-~~~Gv~~i~~~~G~Df~~~~--~~~~D 141 (269)
T 2px2_A 71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-----EEPMLM-QSYGWNIVTMKSGVDVFYKP--SEISD 141 (269)
T ss_dssp CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-----CCCCCC-CSTTGGGEEEECSCCGGGSC--CCCCS
T ss_pred CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-----cCCCcc-cCCCceEEEeeccCCccCCC--CCCCC
Confidence 357899999999999999999987211234455544321 0 000000 00233 44446 987754 55899
Q ss_pred eEEeccccccCCChH-------HHHHHHHhcccCCc-EEEEEEecc
Q 020307 235 AVHAGAALHCWPSPS-------NAVAEISRILRSGG-VFVGTTFLR 272 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~-------~~l~~~~r~LkpgG-~l~i~~~~~ 272 (328)
+|+|...=. ..++. .+|.-+.++|+||| .|++-.+..
T Consensus 142 vVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg 186 (269)
T 2px2_A 142 TLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP 186 (269)
T ss_dssp EEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred EEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence 999976543 33331 24666678999999 999988763
|
| >2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1} | Back alignment and structure |
|---|
Probab=97.66 E-value=1.7e-05 Score=57.30 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=39.8
Q ss_pred cCcccccCCCchhhccCC------------------CCccccccccCceeeCCCCccccCccceeeeecc
Q 020307 58 GDLFSCPICYEPLIRKGP------------------TGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVI 109 (328)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~------------------~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~ 109 (328)
+++++||.|++++..... .+.....+..+.+.|+.|+..||+++|++.++..
T Consensus 6 LdILaCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YPI~dGIPvmL~~ 75 (97)
T 2k5r_A 6 LHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIEDSIPVLLPE 75 (97)
T ss_dssp CSSCCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEETTEEECCGG
T ss_pred hhheECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCccccCCCcccChH
Confidence 578999999998765322 1112334456789999999999999999999877
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00012 Score=65.09 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=43.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD 208 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~ 208 (328)
.++..|||++||+|..+..+++.+. +++|+|+++.+++.|++++...
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~g~--~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARWGR--RALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHh
Confidence 5788999999999999999999876 9999999999999999998764
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00012 Score=65.34 Aligned_cols=80 Identities=18% Similarity=0.268 Sum_probs=63.9
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CC--
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FA-- 229 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~-- 229 (328)
+.+...+++.++|..||.|..+..+++. ++..+|+|+|.++.+++.++ ++. ..++.++.+++.++. ++
T Consensus 51 ~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~------~~Rv~lv~~nF~~l~~~L~~~ 123 (347)
T 3tka_A 51 NGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID------DPRFSIIHGPFSALGEYVAER 123 (347)
T ss_dssp HHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC------CTTEEEEESCGGGHHHHHHHT
T ss_pred HhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc------CCcEEEEeCCHHHHHHHHHhc
Confidence 4566778999999999999999999987 67789999999999999884 431 468999999987763 11
Q ss_pred --CCccceEEeccc
Q 020307 230 --SGFVDAVHAGAA 241 (328)
Q Consensus 230 --~~~fD~i~~~~v 241 (328)
.+++|.|++...
T Consensus 124 g~~~~vDgILfDLG 137 (347)
T 3tka_A 124 DLIGKIDGILLDLG 137 (347)
T ss_dssp TCTTCEEEEEEECS
T ss_pred CCCCcccEEEECCc
Confidence 136999997643
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0016 Score=57.62 Aligned_cols=139 Identities=12% Similarity=0.050 Sum_probs=81.7
Q ss_pred CCeEEEEcCCcCHHHHHH----HHhCCCc--eEEEEeCCH--------H-HHHHHHHHHHhcCc--CCCCCeEEEEecCC
Q 020307 162 GGLLVDVSCGSGLFSRKF----AKSGTYS--GVVALDFSE--------N-MLRQCYDFIKQDNT--ILTSNLALVRADVC 224 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l----~~~~~~~--~v~g~D~s~--------~-~~~~a~~~~~~~~~--~~~~~i~~~~~d~~ 224 (328)
.-+|||+|=|+|.+.... .+..+.. +++.+|..+ . ..+........... .....+.+..+|+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 458999999999865332 2335543 456666421 1 11111111111000 00224567778874
Q ss_pred C-CC-CCCCccceEEeccccccCCCh----HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHH
Q 020307 225 R-LP-FASGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEE 298 (328)
Q Consensus 225 ~-lp-~~~~~fD~i~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (328)
. ++ +.+..||+|+... +---.+| ..+++.++++++|||++...+ ...
T Consensus 177 ~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt--------------------------aag 229 (308)
T 3vyw_A 177 KRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVSYS--------------------------SSL 229 (308)
T ss_dssp HHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC--------------------------CCH
T ss_pred HHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEEEe--------------------------CcH
Confidence 3 33 3455799999854 2222355 489999999999999887522 124
Q ss_pred HHHHHHHHCCCeEEEEEEeC-cEEEEEEeC
Q 020307 299 EIEDLCTSCGLTNYTSKVQQ-SFIMFAAQK 327 (328)
Q Consensus 299 ~l~~ll~~~Gf~~v~~~~~~-~~~~~~a~k 327 (328)
.+++.|+++||++.+....+ .--+.+|.+
T Consensus 230 ~VRR~L~~aGF~V~k~~G~g~KReml~A~~ 259 (308)
T 3vyw_A 230 SVRKSLLTLGFKVGSSREIGRKRKGTVASL 259 (308)
T ss_dssp HHHHHHHHTTCEEEEEECC---CEEEEEES
T ss_pred HHHHHHHHCCCEEEecCCCCCCCceeEEec
Confidence 78899999999988754432 235666654
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0022 Score=57.19 Aligned_cols=147 Identities=17% Similarity=0.070 Sum_probs=95.5
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---------CCCCcc
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------FASGFV 233 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------~~~~~f 233 (328)
..||++|||-=.....+.. ....+++-+| .+..++..++.+...+.....+..++.+|+.+ . +.....
T Consensus 104 ~QvV~LGaGlDTra~Rl~~-~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDW-PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSAR 180 (310)
T ss_dssp CEEEEETCTTCCHHHHSCC-CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSC
T ss_pred CeEEEeCCCCCchhhhccC-CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCC
Confidence 5799999997666544442 2235899999 59999988888875332125678899999875 2 222344
Q ss_pred ceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCc----chhh-HHHHHhh-----h-ccCCC-CC-HH
Q 020307 234 DAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSST----SLTG-RVLRERI-----L-QNYNY-LT-EE 298 (328)
Q Consensus 234 D~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~----~~~~-~~~~~~~-----~-~~~~~-~~-~~ 298 (328)
=++++-.+++++++. ..+++.+...+.||+.+++.......... ..+. +.+.... + ....+ .+ .+
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~ 260 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENRA 260 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTCC
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCCcchhHHHHHHHHHHHHHcCCcCCCCccccccCCCChH
Confidence 577788889999753 47888888888899988887655432101 0001 1121111 1 12233 36 78
Q ss_pred HHHHHHHHCCCeEE
Q 020307 299 EIEDLCTSCGLTNY 312 (328)
Q Consensus 299 ~l~~ll~~~Gf~~v 312 (328)
+..+.|.++||+.+
T Consensus 261 ~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 261 VVADWLNRHGWRAT 274 (310)
T ss_dssp CHHHHHTTTTEEEE
T ss_pred HHHHHHHHCcCccc
Confidence 99999999999887
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0011 Score=57.63 Aligned_cols=98 Identities=9% Similarity=0.026 Sum_probs=66.2
Q ss_pred ccccCCCeEEEEcC------CcCHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC
Q 020307 157 FKSAQGGLLVDVSC------GSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 229 (328)
Q Consensus 157 l~~~~~~~vLDiGc------G~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 229 (328)
+..+.+.+|||+|+ ..|. ..+.+.++. ..++++|+.+-.. ... .++++|...+. .
T Consensus 105 ~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s--------------da~-~~IqGD~~~~~-~ 166 (344)
T 3r24_A 105 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS--------------DAD-STLIGDCATVH-T 166 (344)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC--------------SSS-EEEESCGGGEE-E
T ss_pred EeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc--------------CCC-eEEEccccccc-c
Confidence 44567899999996 5666 345555665 4899999976321 223 45999976543 3
Q ss_pred CCccceEEecccc---ccCC--C------hHHHHHHHHhcccCCcEEEEEEecc
Q 020307 230 SGFVDAVHAGAAL---HCWP--S------PSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 230 ~~~fD~i~~~~vl---~h~~--d------~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
.++||+|++...= -+.. . -+.++.-+.++|+|||.|++-.+..
T Consensus 167 ~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG 220 (344)
T 3r24_A 167 ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 220 (344)
T ss_dssp SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC
Confidence 5789999986431 1111 1 1355667788999999999988654
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0014 Score=59.34 Aligned_cols=60 Identities=15% Similarity=0.116 Sum_probs=50.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 226 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 226 (328)
++..|||||.|.|.++..|.+.....+|+++|+++..+...++.. . ..++.++.+|+..+
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~-----~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E-----GSPLQILKRDPYDW 117 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T-----TSSCEEECSCTTCH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c-----CCCEEEEECCccch
Confidence 358999999999999999998632348999999999999888765 2 45899999999654
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0024 Score=55.41 Aligned_cols=47 Identities=21% Similarity=0.247 Sum_probs=42.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD 208 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~ 208 (328)
.++..|||..||+|..+..+.+.+. +++|+|+++..++.+++++...
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~gr--~~ig~e~~~~~~~~~~~r~~~~ 257 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLNQL 257 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC-
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhc
Confidence 5788999999999999999999876 9999999999999999998753
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.014 Score=52.47 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=64.6
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC------CC
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF------AS 230 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~------~~ 230 (328)
...++.+||-+|+|. |.++..+++.. +.+|+++|.+++.++.+++. ... .++ |..+..+ ..
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l--------Ga~-~~i--~~~~~~~~~~~~~~~ 230 (340)
T 3s2e_A 163 DTRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRL--------GAE-VAV--NARDTDPAAWLQKEI 230 (340)
T ss_dssp TCCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT--------TCS-EEE--ETTTSCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHc--------CCC-EEE--eCCCcCHHHHHHHhC
Confidence 345788999999986 88888888874 44999999999988887662 111 122 2221111 11
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+.+|+|+.... -...++.+.+.|+|+|++++...
T Consensus 231 g~~d~vid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 231 GGAHGVLVTAV------SPKAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp SSEEEEEESSC------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred CCCCEEEEeCC------CHHHHHHHHHHhccCCEEEEeCC
Confidence 35888875432 23468899999999999988653
|
| >1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0032 Score=39.75 Aligned_cols=32 Identities=28% Similarity=0.552 Sum_probs=23.7
Q ss_pred CcccccCCCc-hhhccCCCCccccccccCceeeCCCCccccC
Q 020307 59 DLFSCPICYE-PLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (328)
Q Consensus 59 ~~l~CP~C~~-~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 99 (328)
..+.||.|++ ++..... .+.+.|..||..+..
T Consensus 4 ~~~~CP~C~~~~l~~d~~---------~gelvC~~CG~v~~e 36 (50)
T 1pft_A 4 KQKVCPACESAELIYDPE---------RGEIVCAKCGYVIEE 36 (50)
T ss_dssp SCCSCTTTSCCCEEEETT---------TTEEEESSSCCBCCC
T ss_pred ccEeCcCCCCcceEEcCC---------CCeEECcccCCcccc
Confidence 4678999998 6654332 268999999988743
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.096 Score=46.83 Aligned_cols=127 Identities=12% Similarity=0.088 Sum_probs=82.6
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCC-ceE-EEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC---CCCccceE
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTY-SGV-VALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVDAV 236 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~-~~v-~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD~i 236 (328)
..+++|+-||.|.+...+.+.|.. ..+ .++|+++...+..+.++.. . ++.+|+.++.. +...+|++
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~--------~-~~~~DI~~~~~~~i~~~~~Dil 80 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE--------E-VQVKNLDSISIKQIESLNCNTW 80 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC--------C-CBCCCTTTCCHHHHHHTCCCEE
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC--------C-cccCChhhcCHHHhccCCCCEE
Confidence 458999999999999999998732 346 7999999999888876532 1 56778877642 22368999
Q ss_pred EeccccccC-----------CChH-HHHHHHHh-cccC---CcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHH
Q 020307 237 HAGAALHCW-----------PSPS-NAVAEISR-ILRS---GGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEI 300 (328)
Q Consensus 237 ~~~~vl~h~-----------~d~~-~~l~~~~r-~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 300 (328)
+...--..+ .|+. .++.++.+ +++. .-.+++.+.... + .. .-+.+.+
T Consensus 81 ~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~g-----l-~~-----------~~~~~~i 143 (327)
T 3qv2_A 81 FMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPL-----F-KE-----------SLVFKEI 143 (327)
T ss_dssp EECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGG-----G-GG-----------SHHHHHH
T ss_pred EecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhh-----h-cC-----------hHHHHHH
Confidence 965433322 3554 45666666 5532 134555554321 1 00 0124678
Q ss_pred HHHHHHCCCeEEEE
Q 020307 301 EDLCTSCGLTNYTS 314 (328)
Q Consensus 301 ~~ll~~~Gf~~v~~ 314 (328)
.+.|++.|+.+...
T Consensus 144 ~~~l~~~GY~v~~~ 157 (327)
T 3qv2_A 144 YNILIKNQYYIKDI 157 (327)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred HHHHHhCCCEEEEE
Confidence 88899999987654
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.021 Score=51.44 Aligned_cols=94 Identities=13% Similarity=0.119 Sum_probs=65.0
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
...++.+||-+|+|. |.++..+++.. +.+|+++|.+++.++.+++. .... ++ .+...+ .. .+|+|
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l--------Ga~~-v~-~~~~~~--~~-~~D~v 238 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSM--------GVKH-FY-TDPKQC--KE-ELDFI 238 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHT--------TCSE-EE-SSGGGC--CS-CEEEE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhc--------CCCe-ec-CCHHHH--hc-CCCEE
Confidence 446789999999876 77888888764 44999999999988887762 1122 22 333222 22 79998
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+-.-. .+ ..+....+.|+|+|++++....
T Consensus 239 id~~g-----~~-~~~~~~~~~l~~~G~iv~~G~~ 267 (348)
T 3two_A 239 ISTIP-----TH-YDLKDYLKLLTYNGDLALVGLP 267 (348)
T ss_dssp EECCC-----SC-CCHHHHHTTEEEEEEEEECCCC
T ss_pred EECCC-----cH-HHHHHHHHHHhcCCEEEEECCC
Confidence 85432 22 2477888999999999987543
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.31 Score=43.60 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=93.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcC--------------c------CCCCCeEEE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDN--------------T------ILTSNLALV 219 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~--------------~------~~~~~i~~~ 219 (328)
+...|+-+|||.=.....+...+ +...++=+|. ++.++.=++.+.... . ....+..++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 46789999999877777776542 3457888886 445444333333200 0 014678899
Q ss_pred EecCCCCC----------CCCCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHh
Q 020307 220 RADVCRLP----------FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER 287 (328)
Q Consensus 220 ~~d~~~lp----------~~~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 287 (328)
.+|+.+.. +.....=++++-.++.+++.. ..+|+.+.+.. |+|.+++.++... ..++ ++.+...
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p--~d~f-g~~M~~~ 244 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNM--GDRF-GQIMIEN 244 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCT--TSHH-HHHHHHH
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCC--CCHH-HHHHHHH
Confidence 99986631 333445577788888888643 46777777766 4566666666543 2233 3332221
Q ss_pred ----h---hccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 288 ----I---LQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 288 ----~---~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
. .....+.+.++..+.|.++||+.++..
T Consensus 245 l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~ 279 (334)
T 3iei_A 245 LRRRQCDLAGVETCKSLESQKERLLSNGWETASAV 279 (334)
T ss_dssp HHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEE
T ss_pred HHHhCCCCcccccCCCHHHHHHHHHHcCCCcceee
Confidence 1 122346788999999999999987643
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.035 Score=51.01 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=68.5
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CC------CC
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP------FA 229 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp------~~ 229 (328)
...++.+||-+|+|. |.++..+++...-.+|+++|.+++.++.+++. ..+.+...-.+ +. ..
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l----------Ga~~i~~~~~~~~~~~v~~~t~ 251 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----------GFEIADLSLDTPLHEQIAALLG 251 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----------TCEEEETTSSSCHHHHHHHHHS
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc----------CCcEEccCCcchHHHHHHHHhC
Confidence 446788999999876 88888888874223699999999988888652 12322211111 00 01
Q ss_pred CCccceEEecccc---------ccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 230 SGFVDAVHAGAAL---------HCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 230 ~~~fD~i~~~~vl---------~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
...+|+|+-.-.- .|.+++...++...+.|++||++++..
T Consensus 252 g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 252 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 2369999865432 234556677899999999999988754
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.021 Score=51.99 Aligned_cols=98 Identities=17% Similarity=0.128 Sum_probs=64.4
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-----CCCCC
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASG 231 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~ 231 (328)
...++.+||-+|+|. |.++..+++.....+|+++|.+++.++.+++. ... .++..+-.++ ....+
T Consensus 187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l--------Ga~-~vi~~~~~~~~~~~~~~~~g 257 (371)
T 1f8f_A 187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL--------GAT-HVINSKTQDPVAAIKEITDG 257 (371)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH--------TCS-EEEETTTSCHHHHHHHHTTS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc--------CCC-EEecCCccCHHHHHHHhcCC
Confidence 446788999999886 77888888763222699999999988888753 111 1221111111 01123
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.+|+|+-.-. . ...++...+.|+++|++++...
T Consensus 258 g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 258 GVNFALESTG-----S-PEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp CEEEEEECSC-----C-HHHHHHHHHTEEEEEEEEECCC
T ss_pred CCcEEEECCC-----C-HHHHHHHHHHHhcCCEEEEeCC
Confidence 6899885432 2 3458889999999999988654
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.049 Score=48.88 Aligned_cols=98 Identities=16% Similarity=0.150 Sum_probs=60.5
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC------CCC
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FAS 230 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~~ 230 (328)
...++.+||-+|+|. |.++..+++.....+|+++|.+++-++.+++. ... ..+...-.+.. ...
T Consensus 160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~--------Ga~-~~i~~~~~~~~~~v~~~t~g 230 (348)
T 4eez_A 160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI--------GAD-VTINSGDVNPVDEIKKITGG 230 (348)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT--------TCS-EEEEC-CCCHHHHHHHHTTS
T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc--------CCe-EEEeCCCCCHHHHhhhhcCC
Confidence 346789999999987 44555555543356999999999888777653 111 12211111110 112
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
..+|.++...+ -...+....+.|+++|++++...
T Consensus 231 ~g~d~~~~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 264 (348)
T 4eez_A 231 LGVQSAIVCAV------ARIAFEQAVASLKPMGKMVAVAV 264 (348)
T ss_dssp SCEEEEEECCS------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred CCceEEEEecc------CcchhheeheeecCCceEEEEec
Confidence 24666654322 24568888999999999887653
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.031 Score=51.72 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=49.7
Q ss_pred cccCCCeEEEEcCCcCHHHHHHH-HhCC-CceEEEEeCCHHHHHHHHHHHHh--cCcCCC-CCeEEEEecC
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFA-KSGT-YSGVVALDFSENMLRQCYDFIKQ--DNTILT-SNLALVRADV 223 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~-~~~~-~~~v~g~D~s~~~~~~a~~~~~~--~~~~~~-~~i~~~~~d~ 223 (328)
...++..++|||++.|.++..++ +.++ ..+|+++|+++...+..+++++. ++. . .++.++..-+
T Consensus 223 ~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~--~~~~v~~~~~al 291 (409)
T 2py6_A 223 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTN--FASRITVHGCGA 291 (409)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTST--TGGGEEEECSEE
T ss_pred ccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccC--CCCCEEEEEeEE
Confidence 34688999999999999999888 4544 36999999999999999998876 221 3 5666665444
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.047 Score=50.20 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=65.8
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C-----C-C
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-----F-A 229 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-----~-~ 229 (328)
...++.+||.+|+|. |.++..+++...-.+|+++|.+++.++.+++. ....+..+-.++ . . .
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----------Ga~~i~~~~~~~~~~~~~~~~~ 251 (398)
T 2dph_A 182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA----------GFETIDLRNSAPLRDQIDQILG 251 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT----------TCEEEETTSSSCHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----------CCcEEcCCCcchHHHHHHHHhC
Confidence 456789999999986 88888888764223899999999988877642 123322111111 0 0 1
Q ss_pred CCccceEEeccccccC--------CChHHHHHHHHhcccCCcEEEEEE
Q 020307 230 SGFVDAVHAGAALHCW--------PSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~--------~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
...+|+|+-.-.-... .++...+++..+.|++||++++..
T Consensus 252 g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 252 KPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp SSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred CCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence 2269999865432210 013356889999999999988754
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.12 Score=46.81 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=65.1
Q ss_pred ccccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC------CC
Q 020307 157 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FA 229 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~ 229 (328)
....++.+||-+|+|. |.++..+++.. +.+|+++|.+++.++.+++. ... .++..+..++. ..
T Consensus 185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l--------Ga~-~vi~~~~~~~~~~v~~~~~ 254 (363)
T 3uog_A 185 GHLRAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFAL--------GAD-HGINRLEEDWVERVYALTG 254 (363)
T ss_dssp TCCCTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH--------TCS-EEEETTTSCHHHHHHHHHT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHc--------CCC-EEEcCCcccHHHHHHHHhC
Confidence 3456789999999876 77777787763 45999999999988887663 111 12221111110 11
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
...+|+|+-.-. ...+....+.|+|+|++++....
T Consensus 255 g~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~G~~ 289 (363)
T 3uog_A 255 DRGADHILEIAG-------GAGLGQSLKAVAPDGRISVIGVL 289 (363)
T ss_dssp TCCEEEEEEETT-------SSCHHHHHHHEEEEEEEEEECCC
T ss_pred CCCceEEEECCC-------hHHHHHHHHHhhcCCEEEEEecC
Confidence 236999986543 12467788999999999887543
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.037 Score=50.36 Aligned_cols=94 Identities=18% Similarity=0.202 Sum_probs=62.3
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe---c-CCCCCCCCCc
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA---D-VCRLPFASGF 232 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~---d-~~~lp~~~~~ 232 (328)
...++.+||-+|+|. |.++..+++.. +.+|+++|.+++.++.+++. ... .++.. + ...+ . +.
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~l--------Ga~-~vi~~~~~~~~~~~--~-~g 257 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKAL--------GAD-EVVNSRNADEMAAH--L-KS 257 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH--------TCS-EEEETTCHHHHHTT--T-TC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc--------CCc-EEeccccHHHHHHh--h-cC
Confidence 345788999999975 77777887763 44899999999988888753 111 11111 1 1111 1 46
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+|+|+-.-.-. ..++...+.|+++|+++....
T Consensus 258 ~Dvvid~~g~~------~~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 258 FDFILNTVAAP------HNLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp EEEEEECCSSC------CCHHHHHTTEEEEEEEEECCC
T ss_pred CCEEEECCCCH------HHHHHHHHHhccCCEEEEecc
Confidence 89988543321 236778899999999887543
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.18 Score=45.51 Aligned_cols=101 Identities=14% Similarity=0.117 Sum_probs=66.8
Q ss_pred ccccCCCeEEEEcCCc-CHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe-----cCC-CC--
Q 020307 157 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-----DVC-RL-- 226 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-----d~~-~l-- 226 (328)
....++.+||-+|+|. |.++..+++.. +.+ |+++|.+++.++.+++. . ..-+.+... |+. .+
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l-~------~~~~~~~~~~~~~~~~~~~v~~ 246 (363)
T 3m6i_A 175 AGVRLGDPVLICGAGPIGLITMLCAKAA-GACPLVITDIDEGRLKFAKEI-C------PEVVTHKVERLSAEESAKKIVE 246 (363)
T ss_dssp HTCCTTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHH-C------TTCEEEECCSCCHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-c------hhcccccccccchHHHHHHHHH
Confidence 3456788999999876 77888888874 335 99999999999998875 2 112222211 110 00
Q ss_pred CCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 227 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 227 p~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
-.....+|+|+-.-. . ...+....+.|++||++++....
T Consensus 247 ~t~g~g~Dvvid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~~ 285 (363)
T 3m6i_A 247 SFGGIEPAVALECTG-----V-ESSIAAAIWAVKFGGKVFVIGVG 285 (363)
T ss_dssp HTSSCCCSEEEECSC-----C-HHHHHHHHHHSCTTCEEEECCCC
T ss_pred HhCCCCCCEEEECCC-----C-hHHHHHHHHHhcCCCEEEEEccC
Confidence 012346899885432 2 24578899999999999887543
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.054 Score=46.62 Aligned_cols=106 Identities=16% Similarity=0.200 Sum_probs=69.3
Q ss_pred CCeEEEEcCCcCHHHHHHHHh-------CCCceEEEEe-----CCHH-------------------HHHHHHHHH-----
Q 020307 162 GGLLVDVSCGSGLFSRKFAKS-------GTYSGVVALD-----FSEN-------------------MLRQCYDFI----- 205 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~-------~~~~~v~g~D-----~s~~-------------------~~~~a~~~~----- 205 (328)
.+.|+|+|+-.|..+..++.. ++..+++|+| +... ..+..++.+
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 459999999999988776542 3567899999 3210 011112111
Q ss_pred -HhcCcCCCCCeEEEEecCCC-CC-----CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 206 -KQDNTILTSNLALVRADVCR-LP-----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 206 -~~~~~~~~~~i~~~~~d~~~-lp-----~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
...+. ...++.++.+++.+ +| .+..+||+|+...-. ...-...+..+...|+|||++++-+.
T Consensus 150 ~~~~g~-~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 150 SDFFGH-VTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp TSTTTT-SCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred hhhcCC-CCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcCC
Confidence 11121 03789999999854 33 234579999987632 12234678999999999999999664
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.11 Score=46.45 Aligned_cols=95 Identities=22% Similarity=0.245 Sum_probs=62.4
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC------C
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA------S 230 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~------~ 230 (328)
...++.+||-+|+|. |..+..+++.. +.+|+++|.+++.++.+++. + .. .+ .|..+..+. .
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l----G----a~-~~--~d~~~~~~~~~~~~~~ 228 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKEL----G----AD-LV--VNPLKEDAAKFMKEKV 228 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT----T----CS-EE--ECTTTSCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHC----C----CC-EE--ecCCCccHHHHHHHHh
Confidence 345788999999864 77777777663 34999999999988877642 1 11 11 233221110 0
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+.+|+|+..-. . ...++...+.|+++|+++....
T Consensus 229 ~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 229 GGVHAAVVTAV-----S-KPAFQSAYNSIRRGGACVLVGL 262 (339)
T ss_dssp SSEEEEEESSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred CCCCEEEECCC-----C-HHHHHHHHHHhhcCCEEEEecc
Confidence 36888875432 2 2457888999999999887643
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.38 Score=43.58 Aligned_cols=98 Identities=21% Similarity=0.222 Sum_probs=65.9
Q ss_pred ccccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------
Q 020307 157 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------- 227 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------- 227 (328)
....++.+||-+|+|. |.++..+++.....+|+++|.+++..+.+++. ... ..+ |.....
T Consensus 178 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l--------Ga~-~vi--~~~~~~~~~~i~~~ 246 (370)
T 4ej6_A 178 SGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV--------GAT-ATV--DPSAGDVVEAIAGP 246 (370)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH--------TCS-EEE--CTTSSCHHHHHHST
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc--------CCC-EEE--CCCCcCHHHHHHhh
Confidence 3456789999999876 77888888874223899999999988888763 111 111 211100
Q ss_pred --CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 228 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 228 --~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
...+.+|+|+-.- .. ...++...+.|++||++++....
T Consensus 247 ~~~~~gg~Dvvid~~-----G~-~~~~~~~~~~l~~~G~vv~~G~~ 286 (370)
T 4ej6_A 247 VGLVPGGVDVVIECA-----GV-AETVKQSTRLAKAGGTVVILGVL 286 (370)
T ss_dssp TSSSTTCEEEEEECS-----CC-HHHHHHHHHHEEEEEEEEECSCC
T ss_pred hhccCCCCCEEEECC-----CC-HHHHHHHHHHhccCCEEEEEecc
Confidence 1234799998542 22 34588899999999999886543
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.048 Score=44.63 Aligned_cols=93 Identities=20% Similarity=0.172 Sum_probs=59.1
Q ss_pred cccCCCeEEEEcC--CcCHHHHHHHH-hCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-------
Q 020307 158 KSAQGGLLVDVSC--GSGLFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------- 227 (328)
Q Consensus 158 ~~~~~~~vLDiGc--G~G~~~~~l~~-~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------- 227 (328)
...++.+||..|+ |.|..+..+++ .+. +|+++|.+++..+.+++ .+ ... . .|..+..
T Consensus 35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~--~V~~~~~~~~~~~~~~~----~g----~~~-~--~d~~~~~~~~~~~~ 101 (198)
T 1pqw_A 35 RLSPGERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDAKREMLSR----LG----VEY-V--GDSRSVDFADEILE 101 (198)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHT----TC----CSE-E--EETTCSTHHHHHHH
T ss_pred CCCCCCEEEEeeCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHH----cC----CCE-E--eeCCcHHHHHHHHH
Confidence 3457889999995 33655555554 454 89999999887766643 11 111 1 2332211
Q ss_pred -CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 228 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 228 -~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
...+.+|+++.+.. ...++...+.|+|||+++....
T Consensus 102 ~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 102 LTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp HTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEECSC
T ss_pred HhCCCCCeEEEECCc-------hHHHHHHHHHhccCCEEEEEcC
Confidence 11236999986542 2457889999999999887654
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.14 Score=46.12 Aligned_cols=97 Identities=16% Similarity=0.127 Sum_probs=63.3
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC-CCCC------CC
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLP------FA 229 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp------~~ 229 (328)
...++.+||-+|+|. |.++..+++.. +.+|+++|.+++.++.+++. ... .++..+- .++. ..
T Consensus 165 ~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l--------Ga~-~~~~~~~~~~~~~~i~~~~~ 234 (352)
T 1e3j_A 165 GVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNC--------GAD-VTLVVDPAKEEESSIIERIR 234 (352)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT--------TCS-EEEECCTTTSCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh--------CCC-EEEcCcccccHHHHHHHHhc
Confidence 446788999999875 77777777763 34799999999988887652 112 2222110 1110 01
Q ss_pred ---CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 230 ---SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ---~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.+.+|+|+..-. . ...++...+.|+++|+++....
T Consensus 235 ~~~g~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 235 SAIGDLPNVTIDCSG-----N-EKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp HHSSSCCSEEEECSC-----C-HHHHHHHHHHSCTTCEEEECSC
T ss_pred cccCCCCCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEec
Confidence 246899885432 2 3457888999999999988653
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.11 Score=46.90 Aligned_cols=90 Identities=13% Similarity=0.100 Sum_probs=59.3
Q ss_pred CeEEEEcCCc-CHHH-HHHH-HhCCCce-EEEEeCCHH---HHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC-----C
Q 020307 163 GLLVDVSCGS-GLFS-RKFA-KSGTYSG-VVALDFSEN---MLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-----S 230 (328)
Q Consensus 163 ~~vLDiGcG~-G~~~-~~l~-~~~~~~~-v~g~D~s~~---~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-----~ 230 (328)
.+||-+|+|. |.++ ..++ +.. +.+ |+++|.+++ .++.+++. ..+.+ |..+..+. .
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~l----------Ga~~v--~~~~~~~~~i~~~~ 240 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEEL----------DATYV--DSRQTPVEDVPDVY 240 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHHT----------TCEEE--ETTTSCGGGHHHHS
T ss_pred CEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHHc----------CCccc--CCCccCHHHHHHhC
Confidence 8999999865 7777 7787 653 346 999999987 77777642 12222 33221111 1
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+.+|+|+-.- .. ...++.+.+.|+++|+++.....
T Consensus 241 gg~Dvvid~~-----g~-~~~~~~~~~~l~~~G~iv~~g~~ 275 (357)
T 2b5w_A 241 EQMDFIYEAT-----GF-PKHAIQSVQALAPNGVGALLGVP 275 (357)
T ss_dssp CCEEEEEECS-----CC-HHHHHHHHHHEEEEEEEEECCCC
T ss_pred CCCCEEEECC-----CC-hHHHHHHHHHHhcCCEEEEEeCC
Confidence 3688887432 23 23578899999999998886543
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.05 Score=53.86 Aligned_cols=128 Identities=19% Similarity=0.164 Sum_probs=79.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHh-------CC-----CceEEEEeC---CHHHHHHHHHH-----------HHhcCc----
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKS-------GT-----YSGVVALDF---SENMLRQCYDF-----------IKQDNT---- 210 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~-------~~-----~~~v~g~D~---s~~~~~~a~~~-----------~~~~~~---- 210 (328)
+.-+|+|+|-|+|.+...+.+. .| ..+++.+|. +.+.+..+-.. +.....
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 3468999999999976655442 11 156899998 55555443211 111100
Q ss_pred -------CCCCCeEEEEecCCC-CC-CC---CCccceEEeccccccCCCh----HHHHHHHHhcccCCcEEEEEEeccCC
Q 020307 211 -------ILTSNLALVRADVCR-LP-FA---SGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLRYT 274 (328)
Q Consensus 211 -------~~~~~i~~~~~d~~~-lp-~~---~~~fD~i~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~~~ 274 (328)
.....+++..+|+.+ ++ +. ++.+|+++....--. .+| ..+++.+.++++|||.+....
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~-~np~~w~~~~~~~l~~~~~~g~~~~t~~----- 211 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPA-KNPDMWNEQLFNAMARMTRPGGTFSTFT----- 211 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC---CCTTCSHHHHHHHHHHEEEEEEEEESC-----
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCC-CChhhhhHHHHHHHHHHhCCCCEEEecc-----
Confidence 001256677788733 33 11 468999998652111 123 578999999999999866422
Q ss_pred CCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 275 SSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
....+++.|.++||.+.+..
T Consensus 212 ---------------------~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 212 ---------------------AAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp ---------------------CCHHHHHHHHHTTCEEEEEE
T ss_pred ---------------------CcHHHHHHHHhCCeEEEecc
Confidence 11367888999999877643
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.072 Score=47.87 Aligned_cols=96 Identities=16% Similarity=0.202 Sum_probs=61.2
Q ss_pred cccCCCeEEEEcCCc--CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-------C
Q 020307 158 KSAQGGLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------F 228 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------~ 228 (328)
...++.+||-.|+|. |..+..+++...+.+|+++|.+++.++.+++. .... ++ |..+.. .
T Consensus 167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~--------g~~~-~~--~~~~~~~~~~~~~~ 235 (347)
T 1jvb_A 167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA--------GADY-VI--NASMQDPLAEIRRI 235 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH--------TCSE-EE--ETTTSCHHHHHHHH
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh--------CCCE-Ee--cCCCccHHHHHHHH
Confidence 345788999999983 55555555542123899999999888877652 1111 11 221111 1
Q ss_pred CC-CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 229 AS-GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 229 ~~-~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.. +.+|+|+.... ....++...+.|+++|+++....
T Consensus 236 ~~~~~~d~vi~~~g------~~~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 236 TESKGVDAVIDLNN------SEKTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp TTTSCEEEEEESCC------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred hcCCCceEEEECCC------CHHHHHHHHHHHhcCCEEEEECC
Confidence 12 47899886543 23467888999999999887653
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.097 Score=47.23 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=64.3
Q ss_pred ccccCCCeEEEEcCCc-CHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec------C-CCCC
Q 020307 157 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD------V-CRLP 227 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d------~-~~lp 227 (328)
....++.+||-+|+|. |.++..+++.. +. +|+++|.+++.++.+++. ... .++..+ . ..+.
T Consensus 167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l--------Ga~-~vi~~~~~~~~~~~~~i~ 236 (356)
T 1pl8_A 167 GGVTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEI--------GAD-LVLQISKESPQEIARKVE 236 (356)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHT--------TCS-EEEECSSCCHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh--------CCC-EEEcCcccccchHHHHHH
Confidence 3456789999999886 78888888874 34 899999999888887652 111 222211 0 0000
Q ss_pred -CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 228 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 228 -~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
...+.+|+|+-.- .. ...+....+.|+|||+++....
T Consensus 237 ~~~~~g~D~vid~~-----g~-~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 237 GQLGCKPEVTIECT-----GA-EASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp HHHTSCCSEEEECS-----CC-HHHHHHHHHHSCTTCEEEECSC
T ss_pred HHhCCCCCEEEECC-----CC-hHHHHHHHHHhcCCCEEEEEec
Confidence 0014689988543 22 3457888999999999988654
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.071 Score=48.71 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=55.4
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC--------CCCccc
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------ASGFVD 234 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--------~~~~fD 234 (328)
.+++|+-||.|.++..+...|. ..+.++|+++..++..+.+ .++..++++|+.++.. ....+|
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~-~~v~avE~d~~a~~t~~~N--------~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D 73 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGF-DVKMAVEIDQHAINTHAIN--------FPRSLHVQEDVSLLNAEIIKGFFKNDMPID 73 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTC-EEEEEECSCHHHHHHHHHH--------CTTSEEECCCGGGCCHHHHHHHHCSCCCCC
T ss_pred CeEEEEccCcCHHHHHHHHCCC-cEEEEEeCCHHHHHHHHHh--------CCCCceEecChhhcCHHHHHhhcccCCCee
Confidence 4899999999999999999884 3577999999998887775 4566788899877631 245799
Q ss_pred eEEeccc
Q 020307 235 AVHAGAA 241 (328)
Q Consensus 235 ~i~~~~v 241 (328)
+|+..--
T Consensus 74 ~i~ggpP 80 (376)
T 3g7u_A 74 GIIGGPP 80 (376)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 9997543
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.13 Score=47.37 Aligned_cols=98 Identities=13% Similarity=0.047 Sum_probs=63.7
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------C
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------F 228 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~ 228 (328)
...++.+||-+|+|. |.++..+++...-.+|+++|.+++.++.+++. ... .++ |..... .
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l--------Ga~-~vi--~~~~~~~~~~i~~~t 278 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL--------GAD-HVI--DPTKENFVEAVLDYT 278 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH--------TCS-EEE--CTTTSCHHHHHHHHT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc--------CCC-EEE--cCCCCCHHHHHHHHh
Confidence 356788999999876 77888888875223899999999998888764 111 111 221111 1
Q ss_pred CCCccceEEeccccccCCChHHHHHHHHhcc----cCCcEEEEEEec
Q 020307 229 ASGFVDAVHAGAALHCWPSPSNAVAEISRIL----RSGGVFVGTTFL 271 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~L----kpgG~l~i~~~~ 271 (328)
....+|+|+- .+..+...+..+.+.| +++|++++....
T Consensus 279 ~g~g~D~vid-----~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~ 320 (404)
T 3ip1_A 279 NGLGAKLFLE-----ATGVPQLVWPQIEEVIWRARGINATVAIVARA 320 (404)
T ss_dssp TTCCCSEEEE-----CSSCHHHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred CCCCCCEEEE-----CCCCcHHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence 1236898884 3345544555666666 999999886543
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.0083 Score=52.29 Aligned_cols=108 Identities=9% Similarity=-0.040 Sum_probs=79.1
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CC---CCCCcc
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP---FASGFV 233 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp---~~~~~f 233 (328)
....+..+||+=+|+|.++..+.+.+ .+++.+|.++..++..++++.. ..++.++..|... +. -+..+|
T Consensus 88 ~~~n~~~~LDlfaGSGaLgiEaLS~~--d~~vfvE~~~~a~~~L~~Nl~~-----~~~~~V~~~D~~~~L~~l~~~~~~f 160 (283)
T 2oo3_A 88 KQINLNSTLSYYPGSPYFAINQLRSQ--DRLYLCELHPTEYNFLLKLPHF-----NKKVYVNHTDGVSKLNALLPPPEKR 160 (283)
T ss_dssp HHHSSSSSCCEEECHHHHHHHHSCTT--SEEEEECCSHHHHHHHTTSCCT-----TSCEEEECSCHHHHHHHHCSCTTSC
T ss_pred HHhcCCCceeEeCCcHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHhCc-----CCcEEEEeCcHHHHHHHhcCCCCCc
Confidence 33456679999999999999998855 4999999999999988887654 4578999999532 21 123469
Q ss_pred ceEEeccccccCCChHHHHHHHHh--cccCCcEEEEEEecc
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFLR 272 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r--~LkpgG~l~i~~~~~ 272 (328)
|+|++.=-.+.-.+...+++.+.+ .+.|+|++++--|..
T Consensus 161 dLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~ 201 (283)
T 2oo3_A 161 GLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVV 201 (283)
T ss_dssp EEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEES
T ss_pred cEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEecc
Confidence 999986554433344566666665 456899999966554
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.056 Score=48.72 Aligned_cols=99 Identities=12% Similarity=0.153 Sum_probs=65.0
Q ss_pred ccccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC------CC
Q 020307 157 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FA 229 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~ 229 (328)
....++.+||-+|+|. |.++..+++...-.+|+++|.+++.++.+++. ... .++..+-.++. ..
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l--------Ga~-~vi~~~~~~~~~~v~~~t~ 232 (352)
T 3fpc_A 162 ANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY--------GAT-DIINYKNGDIVEQILKATD 232 (352)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH--------TCC-EEECGGGSCHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh--------CCc-eEEcCCCcCHHHHHHHHcC
Confidence 3456788999999876 77888888874223799999999988888764 111 12211111110 11
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
...+|+|+-.-. .+ ..++...+.|+|||+++....
T Consensus 233 g~g~D~v~d~~g-----~~-~~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 233 GKGVDKVVIAGG-----DV-HTFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp TCCEEEEEECSS-----CT-THHHHHHHHEEEEEEEEECCC
T ss_pred CCCCCEEEECCC-----Ch-HHHHHHHHHHhcCCEEEEecc
Confidence 236999985332 22 357889999999999987653
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.061 Score=53.04 Aligned_cols=126 Identities=16% Similarity=0.103 Sum_probs=78.2
Q ss_pred CCeEEEEcCCcCHHHHHHHHh-------C-----CCceEEEEeC---CHHHHHHHHHH-----------HHhcCc-----
Q 020307 162 GGLLVDVSCGSGLFSRKFAKS-------G-----TYSGVVALDF---SENMLRQCYDF-----------IKQDNT----- 210 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~-------~-----~~~~v~g~D~---s~~~~~~a~~~-----------~~~~~~----- 210 (328)
.-+|||+|-|+|.+.....+. . ...+++++|. +.+.+..+-.. ......
T Consensus 67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (676)
T 3ps9_A 67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 146 (676)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence 458999999999866555332 1 1246899998 77777644331 111100
Q ss_pred ------CCCCCeEEEEecCCC-CC-C---CCCccceEEeccccccCCCh----HHHHHHHHhcccCCcEEEEEEeccCCC
Q 020307 211 ------ILTSNLALVRADVCR-LP-F---ASGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLRYTS 275 (328)
Q Consensus 211 ------~~~~~i~~~~~d~~~-lp-~---~~~~fD~i~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~~~~ 275 (328)
.....+++..+|+.+ ++ + .+..||+|+...- ---.+| ..+++.+.++++|||.+....
T Consensus 147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f-~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------ 219 (676)
T 3ps9_A 147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGF-APAKNPDMWTQNLFNAMARLARPGGTLATFT------ 219 (676)
T ss_dssp EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCS-CGGGCGGGSCHHHHHHHHHHEEEEEEEEESC------
T ss_pred eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCC-CCcCChhhhhHHHHHHHHHHhCCCCEEEecc------
Confidence 001234566677632 22 1 1467999997542 111234 478999999999999876522
Q ss_pred CcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 276 STSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
....+++.|.++||.+.+.
T Consensus 220 --------------------~~~~vr~~L~~aGf~v~~~ 238 (676)
T 3ps9_A 220 --------------------SAGFVRRGLQDAGFTMQKR 238 (676)
T ss_dssp --------------------CCHHHHHHHHHHTCEEEEE
T ss_pred --------------------CcHHHHHHHHhCCeEEEec
Confidence 1136788899999987763
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.035 Score=50.10 Aligned_cols=71 Identities=11% Similarity=0.057 Sum_probs=54.5
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC---CCCccceEEe
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVDAVHA 238 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD~i~~ 238 (328)
.+++|+-||.|.+...+...|.. ..++++|+++.+++..+.++ ++..++.+|+.++.. +...+|+|+.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~--------~~~~~~~~Di~~~~~~~~~~~~~D~l~~ 74 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF--------PHTQLLAKTIEGITLEEFDRLSFDMILM 74 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhc--------cccccccCCHHHccHhHcCcCCcCEEEE
Confidence 48999999999999999998732 35899999999999988873 344577888877641 1125899997
Q ss_pred ccc
Q 020307 239 GAA 241 (328)
Q Consensus 239 ~~v 241 (328)
..-
T Consensus 75 gpP 77 (343)
T 1g55_A 75 SPP 77 (343)
T ss_dssp CCC
T ss_pred cCC
Confidence 643
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.078 Score=47.57 Aligned_cols=94 Identities=7% Similarity=0.115 Sum_probs=61.8
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE----ecC-CCCCCCCCcc
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR----ADV-CRLPFASGFV 233 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~----~d~-~~lp~~~~~f 233 (328)
++.+||-+|+|. |.++..+++.. ++.+|+++|.+++.++.+++. ... .++. .|. ..+. ....+
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l--------Ga~-~vi~~~~~~~~~~~~~-~g~g~ 239 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL--------GAD-YVSEMKDAESLINKLT-DGLGA 239 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH--------TCS-EEECHHHHHHHHHHHH-TTCCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh--------CCC-EEeccccchHHHHHhh-cCCCc
Confidence 788999999975 67777777652 234899999999988888763 111 1111 111 1111 12368
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
|+|+-.-. . ...++...+.|+|+|+++....
T Consensus 240 D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 240 SIAIDLVG-----T-EETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp EEEEESSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred cEEEECCC-----C-hHHHHHHHHHhhcCCEEEEeCC
Confidence 99985432 2 3357889999999999887653
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.048 Score=48.32 Aligned_cols=91 Identities=9% Similarity=0.026 Sum_probs=59.7
Q ss_pred ccccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
....++.+||-+|+|. |.++..+++.. +.+|++++ +++..+.+++. ..+.+..|.+.+ .+.+|+
T Consensus 138 ~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~l----------Ga~~v~~d~~~v---~~g~Dv 202 (315)
T 3goh_A 138 IPLTKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAKR----------GVRHLYREPSQV---TQKYFA 202 (315)
T ss_dssp SCCCSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHHH----------TEEEEESSGGGC---CSCEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHHc----------CCCEEEcCHHHh---CCCccE
Confidence 3456789999999964 77888888763 34999999 98888888763 112222232222 457999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
|+-.-. .+ .+....+.|+++|+++...
T Consensus 203 v~d~~g-----~~--~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 203 IFDAVN-----SQ--NAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp EECC--------------TTGGGEEEEEEEEEEC
T ss_pred EEECCC-----ch--hHHHHHHHhcCCCEEEEEe
Confidence 885332 22 2366789999999998863
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.12 Score=46.96 Aligned_cols=98 Identities=17% Similarity=0.167 Sum_probs=63.7
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec--CCCCC-----CC
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD--VCRLP-----FA 229 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d--~~~lp-----~~ 229 (328)
...++.+||-+|+|. |.++..+++...-.+|+++|.+++.++.+++. + --.++... -..+. ..
T Consensus 190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l----G-----a~~vi~~~~~~~~~~~~i~~~~ 260 (378)
T 3uko_A 190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF----G-----VNEFVNPKDHDKPIQEVIVDLT 260 (378)
T ss_dssp CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT----T-----CCEEECGGGCSSCHHHHHHHHT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C-----CcEEEccccCchhHHHHHHHhc
Confidence 456788999999975 77888888764223799999999988877652 1 11122111 01110 11
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCC-cEEEEEEe
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 270 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~ 270 (328)
.+.+|+|+-.- ..+ ..++...+.|++| |++++...
T Consensus 261 ~gg~D~vid~~-----g~~-~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 261 DGGVDYSFECI-----GNV-SVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp TSCBSEEEECS-----CCH-HHHHHHHHTBCTTTCEEEECSC
T ss_pred CCCCCEEEECC-----CCH-HHHHHHHHHhhccCCEEEEEcc
Confidence 23689988543 233 4578899999997 99888654
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.11 Score=46.32 Aligned_cols=93 Identities=11% Similarity=0.003 Sum_probs=60.4
Q ss_pred cccCCCeEEEEcC--CcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CC-------
Q 020307 158 KSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP------- 227 (328)
Q Consensus 158 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp------- 227 (328)
...++.+||..|+ |.|..+..+++.. +.+|+++|.+++.++.+++ + + ... ..|..+ ..
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~-~---g----~~~---~~d~~~~~~~~~~~~~ 209 (333)
T 1v3u_A 142 GVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQ-I---G----FDA---AFNYKTVNSLEEALKK 209 (333)
T ss_dssp CCCSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH-T---T----CSE---EEETTSCSCHHHHHHH
T ss_pred CCCCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-c---C----CcE---EEecCCHHHHHHHHHH
Confidence 3457889999998 3466666666542 3499999999988877743 1 1 111 123322 11
Q ss_pred CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 228 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
...+.+|+++.+.. ...++...+.|++||++++..
T Consensus 210 ~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 210 ASPDGYDCYFDNVG-------GEFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp HCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECC
T ss_pred HhCCCCeEEEECCC-------hHHHHHHHHHHhcCCEEEEEe
Confidence 11246899886554 235788899999999998764
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=94.31 E-value=0.74 Score=41.02 Aligned_cols=126 Identities=15% Similarity=0.102 Sum_probs=76.9
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC-CCccceEEecc
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGA 240 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~i~~~~ 240 (328)
+.+++|+-||.|.+...+...|. ..+.++|+++..++..+.++.. .. .+|+.++... -..+|+|+...
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~-~~v~~~e~d~~a~~t~~~N~~~-----~~-----~~Di~~~~~~~~~~~D~l~~gp 79 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGE-----KP-----EGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSC-----CC-----BSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCcEEEECCCcCHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHcCC-----CC-----cCCHHHcCHhhCCCCCEEEECC
Confidence 56899999999999999999874 4588999999999888887542 11 5777665311 13589998753
Q ss_pred ccccC---------CChH-HH---HHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHC
Q 020307 241 ALHCW---------PSPS-NA---VAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 241 vl~h~---------~d~~-~~---l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 307 (328)
-...+ .|+. .+ +-++.+.++|. +++.+.... .... ...-..+.+.+.|++.
T Consensus 80 PCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~--~~~~ENV~g--l~~~------------~~~~~~~~i~~~l~~~ 143 (327)
T 2c7p_A 80 PCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKN--FASH------------DNGNTLEVVKNTMNEL 143 (327)
T ss_dssp CCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGG--GGTG------------GGGHHHHHHHHHHHHT
T ss_pred CCCCcchhcccCCCcchhhHHHHHHHHHHHhccCc--EEEEeCcHH--HHhc------------cccHHHHHHHHHHHhC
Confidence 22222 2332 12 23344456785 344443221 0000 0001235778888999
Q ss_pred CCeEEEE
Q 020307 308 GLTNYTS 314 (328)
Q Consensus 308 Gf~~v~~ 314 (328)
|+.+...
T Consensus 144 GY~v~~~ 150 (327)
T 2c7p_A 144 DYSFHAK 150 (327)
T ss_dssp TBCCEEE
T ss_pred CCEEEEE
Confidence 9976553
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.092 Score=47.03 Aligned_cols=95 Identities=16% Similarity=0.233 Sum_probs=61.5
Q ss_pred ccccCCCeEEEEcCC--cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-------
Q 020307 157 FKSAQGGLLVDVSCG--SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------- 227 (328)
Q Consensus 157 l~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------- 227 (328)
....++.+||-+|+| .|..+..+++.. +.+|+++|.+++.++.+++. .... .+ |.....
T Consensus 140 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l--------ga~~-~~--~~~~~~~~~~~~~ 207 (340)
T 3gms_A 140 LNLQRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLRL--------GAAY-VI--DTSTAPLYETVME 207 (340)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH--------TCSE-EE--ETTTSCHHHHHHH
T ss_pred cccCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhC--------CCcE-EE--eCCcccHHHHHHH
Confidence 345678999999987 477777777652 34999999999888888763 1121 11 221111
Q ss_pred -CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 228 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 228 -~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.....+|+|+..-. .+ .+.+..+.|+++|+++....
T Consensus 208 ~~~~~g~Dvvid~~g-----~~--~~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 208 LTNGIGADAAIDSIG-----GP--DGNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp HTTTSCEEEEEESSC-----HH--HHHHHHHTEEEEEEEEECCC
T ss_pred HhCCCCCcEEEECCC-----Ch--hHHHHHHHhcCCCEEEEEee
Confidence 11246999986443 12 23445589999999988754
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.14 Score=45.98 Aligned_cols=97 Identities=13% Similarity=0.192 Sum_probs=64.8
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C-CC
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F-AS 230 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~-~~ 230 (328)
...++.+||-+|+|. |.++..+++.....+|+++|.+++.++.+++. ... .++..+- ++. . ..
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l--------Ga~-~~i~~~~-~~~~~v~~~t~g 237 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV--------GAD-AAVKSGA-GAADAIRELTGG 237 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT--------TCS-EEEECST-THHHHHHHHHGG
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc--------CCC-EEEcCCC-cHHHHHHHHhCC
Confidence 345788999999876 77888888763245999999999998888762 111 1222111 110 0 12
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
..+|+|+-.- .. ...++...+.|+++|++++...
T Consensus 238 ~g~d~v~d~~-----G~-~~~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 238 QGATAVFDFV-----GA-QSTIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp GCEEEEEESS-----CC-HHHHHHHHHHEEEEEEEEECSC
T ss_pred CCCeEEEECC-----CC-HHHHHHHHHHHhcCCEEEEECC
Confidence 2688888533 22 3368899999999999988654
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.092 Score=47.17 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=61.2
Q ss_pred cccCCCeEEEEcCC--cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCC------
Q 020307 158 KSAQGGLLVDVSCG--SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF------ 228 (328)
Q Consensus 158 ~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~------ 228 (328)
...++.+||.+|++ .|..+..+++.. +.+|+++|.+++.++.+++. ... .. .|..+ ..+
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~~--------g~~-~~--~d~~~~~~~~~~~~~ 233 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRSI--------GGE-VF--IDFTKEKDIVGAVLK 233 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHHT--------TCC-EE--EETTTCSCHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHHc--------CCc-eE--EecCccHhHHHHHHH
Confidence 34578899999983 466666666643 34999999998877766542 111 11 24321 110
Q ss_pred -CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 229 -ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 229 -~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
..+.+|+|+.... ....++.+.+.|+++|+++....
T Consensus 234 ~~~~~~D~vi~~~g------~~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 234 ATDGGAHGVINVSV------SEAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp HHTSCEEEEEECSS------CHHHHHHHTTSEEEEEEEEECCC
T ss_pred HhCCCCCEEEECCC------cHHHHHHHHHHHhcCCEEEEEeC
Confidence 1126898886543 23468899999999999887654
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.18 Score=45.75 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=63.2
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec-C-CCCC-----CC
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-V-CRLP-----FA 229 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-~-~~lp-----~~ 229 (328)
...++.+||-+|+|. |.++..+++.....+|+++|.+++.++.+++. ... .++..+ . .++. ..
T Consensus 188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l--------Ga~-~vi~~~~~~~~~~~~i~~~t 258 (373)
T 1p0f_A 188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL--------GAT-ECLNPKDYDKPIYEVICEKT 258 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT--------TCS-EEECGGGCSSCHHHHHHHHT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc--------CCc-EEEecccccchHHHHHHHHh
Confidence 345788999999875 77788888764222799999999988887652 111 122111 0 1110 11
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCC-cEEEEEEe
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 270 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~ 270 (328)
.+.+|+|+-.-. . ...++...+.|+++ |++++...
T Consensus 259 ~gg~Dvvid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 259 NGGVDYAVECAG-----R-IETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp TSCBSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred CCCCCEEEECCC-----C-HHHHHHHHHHHhcCCCEEEEEcc
Confidence 236899885432 2 34578899999999 99887653
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=1.2 Score=43.89 Aligned_cols=150 Identities=13% Similarity=0.179 Sum_probs=89.7
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCC--------CceEEEEeCCHHHHHHHHHHHHhcC-------------cC--------
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIKQDN-------------TI-------- 211 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~g~D~s~~~~~~a~~~~~~~~-------------~~-------- 211 (328)
+...|+-+|||.=.....|....+ ...++=+|. ++.++.=++.+.... ..
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~-p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 185 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDY-SDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL 185 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEEC-HHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECcc-HHHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence 456899999998877777765533 345666665 334433333343110 00
Q ss_pred CCCCeEEEEecCCCCC----------C-CCCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCC-CCc
Q 020307 212 LTSNLALVRADVCRLP----------F-ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT-SST 277 (328)
Q Consensus 212 ~~~~i~~~~~d~~~lp----------~-~~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~-~~~ 277 (328)
...+..++.+|+.+.. + .....-++++-.+|.+++.. ..+|+.+.+. |+|.+++.+..... ...
T Consensus 186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~~~e~~~~~~~~d 263 (695)
T 2zwa_A 186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFIILEQLIPKGPFE 263 (695)
T ss_dssp ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEEEEEECCTTCTTS
T ss_pred cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEEEEEeecCCCCCC
Confidence 0137889999997641 1 23334566677888888643 4677777754 67777776654432 122
Q ss_pred chhhHHHHHhh-------hccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 278 SLTGRVLRERI-------LQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 278 ~~~~~~~~~~~-------~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
++ ++.+.... .....+.+.++..+.|.++||+.+..
T Consensus 264 ~f-~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~ 306 (695)
T 2zwa_A 264 PF-SKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNV 306 (695)
T ss_dssp HH-HHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEE
T ss_pred hH-HHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcce
Confidence 22 33222211 12235678999999999999987653
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.13 Score=45.80 Aligned_cols=95 Identities=11% Similarity=0.026 Sum_probs=62.2
Q ss_pred cccCCCeEEEEcCC--cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-------C
Q 020307 158 KSAQGGLLVDVSCG--SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------F 228 (328)
Q Consensus 158 ~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------~ 228 (328)
...++.+||-+|++ .|..+..+++.. +.+|+++|.+++.++.+.+.+ ... ..+ |..... .
T Consensus 146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~-------g~~-~~~--~~~~~~~~~~~~~~ 214 (336)
T 4b7c_A 146 QPKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEEL-------GFD-GAI--DYKNEDLAAGLKRE 214 (336)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTT-------CCS-EEE--ETTTSCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHc-------CCC-EEE--ECCCHHHHHHHHHh
Confidence 45678999999983 477777777653 349999999998887773321 111 111 222111 1
Q ss_pred CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 229 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
..+.+|+|+.+-. ...+....+.|+++|++++...
T Consensus 215 ~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 215 CPKGIDVFFDNVG-------GEILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp CTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECCC
T ss_pred cCCCceEEEECCC-------cchHHHHHHHHhhCCEEEEEee
Confidence 1246898886443 2468899999999999988653
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.04 E-value=0.24 Score=44.91 Aligned_cols=95 Identities=18% Similarity=0.206 Sum_probs=63.1
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC----CC----
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LP---- 227 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp---- 227 (328)
...++.+||-+|+|. |.++..+++.. +. +|+++|.+++.++.+++. ... .++ |..+ +.
T Consensus 189 ~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~l--------Ga~-~vi--~~~~~~~~~~~~~~ 256 (374)
T 1cdo_A 189 KVEPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVF--------GAT-DFV--NPNDHSEPISQVLS 256 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHT--------TCC-EEE--CGGGCSSCHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHh--------CCc-eEE--eccccchhHHHHHH
Confidence 345788999999875 77788888774 34 799999999988887652 111 111 2211 10
Q ss_pred -CCCCccceEEeccccccCCChHHHHHHHHhcccCC-cEEEEEEe
Q 020307 228 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 270 (328)
Q Consensus 228 -~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~ 270 (328)
...+.+|+|+-.-. . ...++...+.|+++ |++++...
T Consensus 257 ~~~~~g~D~vid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 257 KMTNGGVDFSLECVG-----N-VGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp HHHTSCBSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred HHhCCCCCEEEECCC-----C-HHHHHHHHHHhhcCCcEEEEEcC
Confidence 11236898885332 2 34578899999999 99887653
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.17 Score=45.34 Aligned_cols=92 Identities=13% Similarity=0.090 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------CCC
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FAS 230 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~~ 230 (328)
++.+||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++. ... .++ |..... ...
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~~--------Ga~-~~~--~~~~~~~~~~v~~~~~g 234 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKKV--------GAD-YVI--NPFEEDVVKEVMDITDG 234 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHH--------TCS-EEE--CTTTSCHHHHHHHHTTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh--------CCC-EEE--CCCCcCHHHHHHHHcCC
Confidence 788999999964 77777777764 44 899999999888887653 111 111 221111 012
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
..+|+|+..-. . ...++.+.+.|+++|+++....
T Consensus 235 ~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 235 NGVDVFLEFSG-----A-PKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp SCEEEEEECSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred CCCCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEcc
Confidence 35899885432 2 3457888999999999887654
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.15 Score=45.43 Aligned_cols=96 Identities=18% Similarity=0.212 Sum_probs=62.4
Q ss_pred cccCCCeEEEEcC-C-cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC------CC
Q 020307 158 KSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FA 229 (328)
Q Consensus 158 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~ 229 (328)
...++.+||-+|+ | .|..+..+++.. +.+|+++|.+++.++.+++. ... ..+..+-.++. ..
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~--------ga~-~~~~~~~~~~~~~~~~~~~ 214 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEY--------GAE-YLINASKEDILRQVLKFTN 214 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT--------TCS-EEEETTTSCHHHHHHHHTT
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc--------CCc-EEEeCCCchHHHHHHHHhC
Confidence 4567899999994 3 377777777763 44999999999888877652 111 12221111110 11
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
...+|+|+..-.- ..++...+.|+++|+++....
T Consensus 215 ~~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G~ 248 (334)
T 3qwb_A 215 GKGVDASFDSVGK-------DTFEISLAALKRKGVFVSFGN 248 (334)
T ss_dssp TSCEEEEEECCGG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred CCCceEEEECCCh-------HHHHHHHHHhccCCEEEEEcC
Confidence 3469999865431 357888899999999988653
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.18 Score=45.68 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=61.6
Q ss_pred CCCeEEEEc-CCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-C-----CCCCCc
Q 020307 161 QGGLLVDVS-CGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-----PFASGF 232 (328)
Q Consensus 161 ~~~~vLDiG-cG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-----p~~~~~ 232 (328)
++.+||-+| +|. |.++..+++.....+|+++|.+++.++.+++. ... .++ |..+ + ....+.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l--------Gad-~vi--~~~~~~~~~v~~~~~~g 239 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL--------GAH-HVI--DHSKPLAAEVAALGLGA 239 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT--------TCS-EEE--CTTSCHHHHHHTTCSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc--------CCC-EEE--eCCCCHHHHHHHhcCCC
Confidence 678999998 554 88888888862245999999999888887652 111 111 1111 0 012357
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT 268 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~ 268 (328)
+|+|+-.-. -...+..+.+.|+++|++++.
T Consensus 240 ~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 240 PAFVFSTTH------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEEEECSC------HHHHHHHHHHHSCTTCEEEEC
T ss_pred ceEEEECCC------chhhHHHHHHHhcCCCEEEEE
Confidence 998885332 234678899999999999876
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=93.91 E-value=0.25 Score=44.73 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=62.6
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC--CCCC-----C
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRLP-----F 228 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~lp-----~ 228 (328)
...++.+||-+|+|. |.++..+++.. +. +|+++|.+++.++.+++. ... .++..+- .++. .
T Consensus 188 ~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~l--------Ga~-~vi~~~~~~~~~~~~~~~~ 257 (374)
T 2jhf_A 188 KVTQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEV--------GAT-ECVNPQDYKKPIQEVLTEM 257 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHT--------TCS-EEECGGGCSSCHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHh--------CCc-eEecccccchhHHHHHHHH
Confidence 445788999999876 77788888764 34 799999999988887652 111 1111110 0110 1
Q ss_pred CCCccceEEeccccccCCChHHHHHHHHhcccCC-cEEEEEE
Q 020307 229 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTT 269 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~ 269 (328)
..+.+|+|+-.- .. ...++...+.|+++ |++++..
T Consensus 258 ~~~g~D~vid~~-----g~-~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 258 SNGGVDFSFEVI-----GR-LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp TTSCBSEEEECS-----CC-HHHHHHHHHHBCTTTCEEEECS
T ss_pred hCCCCcEEEECC-----CC-HHHHHHHHHHhhcCCcEEEEec
Confidence 123689887543 22 34578899999999 9988764
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.26 Score=44.69 Aligned_cols=95 Identities=15% Similarity=0.127 Sum_probs=63.1
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC----CC----
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LP---- 227 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp---- 227 (328)
...++.+||-+|+|. |.++..+++.. +. +|+++|.+++.++.+++. ... .++ |..+ +.
T Consensus 192 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l--------Ga~-~vi--~~~~~~~~~~~~v~ 259 (376)
T 1e3i_A 192 KVTPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAKAL--------GAT-DCL--NPRELDKPVQDVIT 259 (376)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHT--------TCS-EEE--CGGGCSSCHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHh--------CCc-EEE--ccccccchHHHHHH
Confidence 445788999999875 77888888874 34 799999999988887652 111 111 2111 10
Q ss_pred -CCCCccceEEeccccccCCChHHHHHHHHhcccCC-cEEEEEEe
Q 020307 228 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 270 (328)
Q Consensus 228 -~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~ 270 (328)
...+.+|+|+-.- .. ...++...+.|+++ |++++...
T Consensus 260 ~~~~~g~Dvvid~~-----G~-~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 260 ELTAGGVDYSLDCA-----GT-AQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp HHHTSCBSEEEESS-----CC-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred HHhCCCccEEEECC-----CC-HHHHHHHHHHhhcCCCEEEEECC
Confidence 1123689887433 22 34578899999999 99887653
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.25 Score=43.66 Aligned_cols=91 Identities=14% Similarity=0.110 Sum_probs=60.2
Q ss_pred eEEEEcC-C-cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-CCCCCccceEEecc
Q 020307 164 LLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVHAGA 240 (328)
Q Consensus 164 ~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~i~~~~ 240 (328)
+||-+|+ | .|.++..+++.. +.+|+++|.+++..+.+++. .....+-..+.... ....+.+|+|+-.
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~l--------Ga~~vi~~~~~~~~~~~~~~~~d~v~d~- 218 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKSL--------GANRILSRDEFAESRPLEKQLWAGAIDT- 218 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHH--------TCSEEEEGGGSSCCCSSCCCCEEEEEES-
T ss_pred eEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc--------CCCEEEecCCHHHHHhhcCCCccEEEEC-
Confidence 3999997 3 478888888874 44999999999988888763 11111111121111 1224568887643
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+.. ..+....+.|+++|+++....
T Consensus 219 ----~g~--~~~~~~~~~l~~~G~iv~~G~ 242 (324)
T 3nx4_A 219 ----VGD--KVLAKVLAQMNYGGCVAACGL 242 (324)
T ss_dssp ----SCH--HHHHHHHHTEEEEEEEEECCC
T ss_pred ----CCc--HHHHHHHHHHhcCCEEEEEec
Confidence 232 378999999999999988653
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.43 Score=42.57 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=62.7
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC------CCC
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FAS 230 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~~ 230 (328)
...++.+||-.|+|. |.++..+++......++++|.+++-++.+++. .....+...-...+ -..
T Consensus 157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l---------Ga~~~i~~~~~~~~~~~~~~~~~ 227 (346)
T 4a2c_A 157 QGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF---------GAMQTFNSSEMSAPQMQSVLREL 227 (346)
T ss_dssp TCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---------TCSEEEETTTSCHHHHHHHHGGG
T ss_pred ccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc---------CCeEEEeCCCCCHHHHHHhhccc
Confidence 446788999999986 66777777764334678999999988888762 11222221111111 012
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
..+|+|+..- .. ...++...+.|++||.+++....
T Consensus 228 ~g~d~v~d~~-----G~-~~~~~~~~~~l~~~G~~v~~g~~ 262 (346)
T 4a2c_A 228 RFNQLILETA-----GV-PQTVELAVEIAGPHAQLALVGTL 262 (346)
T ss_dssp CSSEEEEECS-----CS-HHHHHHHHHHCCTTCEEEECCCC
T ss_pred CCcccccccc-----cc-cchhhhhhheecCCeEEEEEecc
Confidence 3467766432 22 34578889999999999886544
|
| >3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.02 Score=43.19 Aligned_cols=28 Identities=14% Similarity=0.428 Sum_probs=24.6
Q ss_pred ccccCceeeCCCCccccCccceeeeecc
Q 020307 82 AIYRSGFKCRKCDKTYSSKDNYLDLTVI 109 (328)
Q Consensus 82 ~~~~~~~~C~~C~~~~~~~~g~~~~~~~ 109 (328)
.+.+|.+.|++||+.|++++|+++.+.+
T Consensus 94 ~V~EG~L~Cp~cgr~ypI~~GIPNm~~~ 121 (125)
T 3q87_A 94 DVVEGSLRCDMCGLIYPIKGSIVETVDT 121 (125)
T ss_dssp EEEEEEEEETTTCCEEEEETTEEECSSC
T ss_pred EEEEEEEECCCCCCEeeccCCcccHHHh
Confidence 3467899999999999999999998765
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=0.18 Score=44.77 Aligned_cols=95 Identities=12% Similarity=0.067 Sum_probs=63.0
Q ss_pred cccCCCeEEEEc-CC-cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------
Q 020307 158 KSAQGGLLVDVS-CG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------- 227 (328)
Q Consensus 158 ~~~~~~~vLDiG-cG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------- 227 (328)
...++.+||-+| +| .|..+..+++.. +.+|+++|.+++.++.+++. ... ..+ |.....
T Consensus 137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~--------Ga~-~~~--~~~~~~~~~~~~~~ 204 (325)
T 3jyn_A 137 QVKPGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKAL--------GAW-ETI--DYSHEDVAKRVLEL 204 (325)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH--------TCS-EEE--ETTTSCHHHHHHHH
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc--------CCC-EEE--eCCCccHHHHHHHH
Confidence 456789999999 34 377777777652 34999999999988888753 111 112 221111
Q ss_pred CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 228 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
.....+|+|+..-.- ..+....+.|+++|++++....
T Consensus 205 ~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g~~ 241 (325)
T 3jyn_A 205 TDGKKCPVVYDGVGQ-------DTWLTSLDSVAPRGLVVSFGNA 241 (325)
T ss_dssp TTTCCEEEEEESSCG-------GGHHHHHTTEEEEEEEEECCCT
T ss_pred hCCCCceEEEECCCh-------HHHHHHHHHhcCCCEEEEEecC
Confidence 122469998865432 3577889999999999887643
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.094 Score=47.35 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=57.7
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe-cCCCCCCCCCccceEEe
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVDAVHA 238 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD~i~~ 238 (328)
++.+||-+|+|. |.++..+++.. +.+|+++|.+++.++.+++.+ + ... ++.. +...+.-..+.+|+|+-
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~~l---G---a~~--vi~~~~~~~~~~~~~g~D~vid 250 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQDL---G---ADD--YVIGSDQAKMSELADSLDYVID 250 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHTTS---C---CSC--EEETTCHHHHHHSTTTEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHc---C---Cce--eeccccHHHHHHhcCCCCEEEE
Confidence 788999999875 66777777653 348999999988777665322 1 111 1111 10000000135898885
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.-.- + ..++...+.|+++|+++....
T Consensus 251 ~~g~-----~-~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 251 TVPV-----H-HALEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp CCCS-----C-CCSHHHHTTEEEEEEEEECSC
T ss_pred CCCC-----h-HHHHHHHHHhccCCEEEEeCC
Confidence 4321 1 125667889999999887653
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.50 E-value=0.087 Score=47.02 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=42.7
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD 208 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~ 208 (328)
..++..|||.-||+|..+....+.+- +++|+|+++..++.+++++...
T Consensus 250 ~~~~~~VlDpF~GsGtt~~aa~~~gr--~~ig~e~~~~~~~~~~~r~~~~ 297 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLDN 297 (323)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSCS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHhc
Confidence 35788999999999999999998876 9999999999999999987653
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=93.46 E-value=0.26 Score=44.64 Aligned_cols=98 Identities=17% Similarity=0.214 Sum_probs=63.0
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe-cC-CCCC-----CC
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DV-CRLP-----FA 229 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~-~~lp-----~~ 229 (328)
...++.+||-+|+|. |.++..+++.....+|+++|.+++.++.+++. ... .++.. +. .++. ..
T Consensus 187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l--------Ga~-~vi~~~~~~~~~~~~v~~~~ 257 (373)
T 2fzw_A 187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF--------GAT-ECINPQDFSKPIQEVLIEMT 257 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH--------TCS-EEECGGGCSSCHHHHHHHHT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc--------CCc-eEeccccccccHHHHHHHHh
Confidence 445788999999875 77777777763222799999999988888753 111 11111 10 0110 11
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCC-cEEEEEEe
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 270 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~ 270 (328)
.+.+|+|+-.-. . ...++...+.|+++ |++++...
T Consensus 258 ~~g~D~vid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 258 DGGVDYSFECIG-----N-VKVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp TSCBSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred CCCCCEEEECCC-----c-HHHHHHHHHhhccCCcEEEEEec
Confidence 236899885432 2 34578899999999 99887653
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=93.40 E-value=0.12 Score=45.46 Aligned_cols=92 Identities=17% Similarity=0.162 Sum_probs=53.5
Q ss_pred CCCeEEEEecCCC-CC-CCCCccceEEeccccccC--------------------CChHHHHHHHHhcccCCcEEEEEEe
Q 020307 213 TSNLALVRADVCR-LP-FASGFVDAVHAGAALHCW--------------------PSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 213 ~~~i~~~~~d~~~-lp-~~~~~fD~i~~~~vl~h~--------------------~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
..++.++++|..+ ++ +++++||+|+++=-.... .....+++++.++|||||.+++...
T Consensus 19 ~~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 19 FGVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp --CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 3467889999855 22 457899999986322111 0113467899999999999988764
Q ss_pred ccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 271 LRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
........ . ..+..+.-..++..+++++||....
T Consensus 99 d~~~~~~~-----~----g~~~~~~~~~~l~~~~~~~Gf~~~~ 132 (297)
T 2zig_A 99 DVAVARRR-----F----GRHLVFPLHADIQVRCRKLGFDNLN 132 (297)
T ss_dssp CEEEECC-------------EEEECHHHHHHHHHHHTTCEEEE
T ss_pred CCcccccc-----C----CcccccccHHHHHHHHHHcCCeeec
Confidence 32100000 0 0000011135677889999997655
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.39 Score=43.33 Aligned_cols=87 Identities=14% Similarity=0.115 Sum_probs=57.3
Q ss_pred CCeEEEEcCCc-CHHHHHHHHh-CCCceEEEEeCCH---HHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC------C
Q 020307 162 GGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSE---NMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA------S 230 (328)
Q Consensus 162 ~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~g~D~s~---~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~------~ 230 (328)
+.+||-+|+|. |..+..+++. +. +|+++|.++ +.++.+++. ..+.+ | .+ .+. .
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~~~~~~~~----------ga~~v--~-~~-~~~~~~~~~~ 244 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL--EVWMANRREPTEVEQTVIEET----------KTNYY--N-SS-NGYDKLKDSV 244 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC--EEEEEESSCCCHHHHHHHHHH----------TCEEE--E-CT-TCSHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--EEEEEeCCccchHHHHHHHHh----------CCcee--c-hH-HHHHHHHHhC
Confidence 88999999854 5566666654 44 999999988 777766642 12222 3 22 211 1
Q ss_pred CccceEEeccccccCCChHHHH-HHHHhcccCCcEEEEEEe
Q 020307 231 GFVDAVHAGAALHCWPSPSNAV-AEISRILRSGGVFVGTTF 270 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l-~~~~r~LkpgG~l~i~~~ 270 (328)
+.+|+|+..-. .+. .+ +...+.|+++|+++....
T Consensus 245 ~~~d~vid~~g-----~~~-~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 245 GKFDVIIDATG-----ADV-NILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp CCEEEEEECCC-----CCT-HHHHHHGGGEEEEEEEEECSC
T ss_pred CCCCEEEECCC-----ChH-HHHHHHHHHHhcCCEEEEEec
Confidence 46899886543 222 35 888999999999887654
|
| >1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ... | Back alignment and structure |
|---|
Probab=93.28 E-value=0.021 Score=40.03 Aligned_cols=30 Identities=23% Similarity=0.627 Sum_probs=22.8
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
..+.||.|+........ .+.|.|+.|+..+
T Consensus 26 ~~y~Cp~CG~~~v~r~a---------tGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQG---------TGIWQCSYCDYKF 55 (83)
T ss_dssp SCEECSSSCCEEEEEEE---------TTEEEETTTCCEE
T ss_pred ccCcCCCCCCcceeccC---------CCeEECCCCCCEe
Confidence 46789999987654332 2799999998865
|
| >3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.15 E-value=0.032 Score=35.02 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=22.3
Q ss_pred cccCcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 56 LEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 56 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
++...--||.||+....... ...+.|.+||..+
T Consensus 15 v~~~~k~CP~CG~~~fm~~~---------~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 15 VIRKNKFCPRCGPGVFMADH---------GDRWACGKCGYTE 47 (50)
T ss_dssp EECSSEECSSSCSSCEEEEC---------SSEEECSSSCCEE
T ss_pred EEEecccCCCCCCceEEecC---------CCeEECCCCCCEE
Confidence 34445559999986544322 1589999998765
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.21 Score=39.15 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=58.1
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCCC----CCccceE
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFA----SGFVDAV 236 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~----~~~fD~i 236 (328)
.+-|||+|-|+|+.-.+|.+..|+.+++.+|-.-..--.+ ..+.-.++.+|+.+ +|.. ....-++
T Consensus 41 ~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~----------~P~~e~~ilGdi~~tL~~~~~r~g~~a~La 110 (174)
T 3iht_A 41 SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDS----------TPPEAQLILGDIRETLPATLERFGATASLV 110 (174)
T ss_dssp CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGG----------CCCGGGEEESCHHHHHHHHHHHHCSCEEEE
T ss_pred CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCC----------CCchHheecccHHHHHHHHHHhcCCceEEE
Confidence 4589999999999999999999999999999532111000 02334456666533 2210 2223333
Q ss_pred EeccccccCCChH-----HHHHHHHhcccCCcEEEEEEec
Q 020307 237 HAGAALHCWPSPS-----NAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 237 ~~~~vl~h~~d~~-----~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
......++ ++.. .+-.-+..+|.|||+++...+.
T Consensus 111 HaD~G~g~-~~~d~a~a~~lsplI~~~la~GGi~vS~~pl 149 (174)
T 3iht_A 111 HADLGGHN-REKNDRFARLISPLIEPHLAQGGLMVSSDRM 149 (174)
T ss_dssp EECCCCSC-HHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred EeecCCCC-cchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 33222221 1111 1223466789999999887665
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.04 E-value=0.29 Score=43.72 Aligned_cols=95 Identities=9% Similarity=-0.010 Sum_probs=61.8
Q ss_pred cccCCCeEEEEcC--CcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-CC------
Q 020307 158 KSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF------ 228 (328)
Q Consensus 158 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~------ 228 (328)
...++.+||-+|+ |.|..+..+++.. +.+|+++|.+++.++.+++.+ + .. .. .|..+. .+
T Consensus 152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~~---g----~~-~~--~d~~~~~~~~~~~~~ 220 (345)
T 2j3h_A 152 SPKEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTKF---G----FD-DA--FNYKEESDLTAALKR 220 (345)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTS---C----CS-EE--EETTSCSCSHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHc---C----Cc-eE--EecCCHHHHHHHHHH
Confidence 3457889999997 3477777776653 349999999998887776321 1 11 11 133211 11
Q ss_pred -CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 229 -ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 229 -~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
..+.+|+|+..-. ...++...+.|++||++++...
T Consensus 221 ~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~G~ 256 (345)
T 2j3h_A 221 CFPNGIDIYFENVG-------GKMLDAVLVNMNMHGRIAVCGM 256 (345)
T ss_dssp HCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECCC
T ss_pred HhCCCCcEEEECCC-------HHHHHHHHHHHhcCCEEEEEcc
Confidence 1246899886543 2368889999999999987643
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=0.12 Score=46.90 Aligned_cols=93 Identities=18% Similarity=0.195 Sum_probs=57.9
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC---CCCCCCccceE
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---LPFASGFVDAV 236 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~---lp~~~~~fD~i 236 (328)
++.+||-+|+|. |.++..+++.. +.+|+++|.+++.++.+++.+ + .. .++ |..+ +.-..+.+|+|
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~l---G----a~-~v~--~~~~~~~~~~~~~~~D~v 255 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALKNF---G----AD-SFL--VSRDQEQMQAAAGTLDGI 255 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHTS---C----CS-EEE--ETTCHHHHHHTTTCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhc---C----Cc-eEE--eccCHHHHHHhhCCCCEE
Confidence 688999999865 66777777663 349999999988777765322 1 11 111 2211 10001368998
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+..-... ..++...+.|+++|+++....
T Consensus 256 id~~g~~------~~~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 256 IDTVSAV------HPLLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp EECCSSC------CCSHHHHHHEEEEEEEEECCC
T ss_pred EECCCcH------HHHHHHHHHHhcCCEEEEEcc
Confidence 8543321 124567788999999887653
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.16 Score=45.58 Aligned_cols=94 Identities=16% Similarity=0.091 Sum_probs=61.8
Q ss_pred cccCCCeEEEEcC-C-cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC------CC
Q 020307 158 KSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FA 229 (328)
Q Consensus 158 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~ 229 (328)
...++.+||-+|+ | .|..+..+++.. +.+|++++.+++.++.+++. ... .++..+ .++. ..
T Consensus 156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~--------ga~-~v~~~~-~~~~~~v~~~~~ 224 (342)
T 4eye_A 156 QLRAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKSV--------GAD-IVLPLE-EGWAKAVREATG 224 (342)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH--------TCS-EEEESS-TTHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc--------CCc-EEecCc-hhHHHHHHHHhC
Confidence 4467899999997 3 377777777763 34999999999888877763 111 122222 2111 11
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
...+|+|+..-.- ..+....+.|+++|++++..
T Consensus 225 ~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 225 GAGVDMVVDPIGG-------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp TSCEEEEEESCC---------CHHHHHHTEEEEEEEEEC-
T ss_pred CCCceEEEECCch-------hHHHHHHHhhcCCCEEEEEE
Confidence 2369999865432 24778889999999998864
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.95 E-value=0.35 Score=43.47 Aligned_cols=93 Identities=12% Similarity=0.075 Sum_probs=60.4
Q ss_pred cccCCCeEEEEcC--CcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------
Q 020307 158 KSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------- 227 (328)
Q Consensus 158 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------- 227 (328)
...++.+||-.|+ |.|..+..+++.. +.+|+++|.+++.++.+++. ... .. .|..+..
T Consensus 167 ~~~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~--------ga~-~~--~d~~~~~~~~~~~~~ 234 (351)
T 1yb5_A 167 CVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQN--------GAH-EV--FNHREVNYIDKIKKY 234 (351)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT--------TCS-EE--EETTSTTHHHHHHHH
T ss_pred CCCCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHc--------CCC-EE--EeCCCchHHHHHHHH
Confidence 3457889999997 3366666666653 34999999999888766542 111 11 2322211
Q ss_pred CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 228 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.....+|+|+.+.. ...+....+.|+++|++++..
T Consensus 235 ~~~~~~D~vi~~~G-------~~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 235 VGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp HCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEECC
T ss_pred cCCCCcEEEEECCC-------hHHHHHHHHhccCCCEEEEEe
Confidence 11236899986543 235778899999999988765
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.88 E-value=0.19 Score=45.82 Aligned_cols=96 Identities=22% Similarity=0.235 Sum_probs=62.5
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec------C-CCCC-C
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD------V-CRLP-F 228 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d------~-~~lp-~ 228 (328)
..++.+||-+|+|. |.++..+++.. + .+|+++|.+++.++.+++. ... .++..+ + +.+. .
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~~l--------Ga~-~vi~~~~~~~~~~~~~v~~~ 262 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAEEI--------GAD-LTLNRRETSVEERRKAIMDI 262 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHHHT--------TCS-EEEETTTSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHc-CCceEEEEcCCHHHHHHHHHc--------CCc-EEEeccccCcchHHHHHHHH
Confidence 45788999999775 77788888764 4 4999999999988887752 111 122211 0 0000 1
Q ss_pred -CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 229 -ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 229 -~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
....+|+|+-.-. .+ ..++...+.|+++|+++....
T Consensus 263 ~~g~g~Dvvid~~g-----~~-~~~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 263 THGRGADFILEATG-----DS-RALLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp TTTSCEEEEEECSS-----CT-THHHHHHHHEEEEEEEEECCC
T ss_pred hCCCCCcEEEECCC-----CH-HHHHHHHHHHhcCCEEEEEec
Confidence 1236999885432 22 347888999999999887653
|
| >2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.014 Score=39.91 Aligned_cols=39 Identities=28% Similarity=0.571 Sum_probs=22.9
Q ss_pred CcccccCCCchhhc----------------cCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIR----------------KGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~----------------~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
.+-.||+||+++.. ..+....+..+.+=.+.|+.||..|
T Consensus 7 ~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEF 61 (95)
T 2k5c_A 7 HMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEF 61 (95)
T ss_dssp -CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEE
T ss_pred ccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHH
Confidence 45679999997522 1111111223344578999999876
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=92.86 E-value=0.089 Score=47.56 Aligned_cols=97 Identities=11% Similarity=0.105 Sum_probs=60.9
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCC-CC--CCCCCcc
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-RL--PFASGFV 233 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~-~l--p~~~~~f 233 (328)
...++.+||-+|+|. |.++..+++.. +.+|+++|.+++.++.+++. ... .++..+-. ++ ... +.+
T Consensus 176 ~~~~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~l--------Ga~-~v~~~~~~~~~~~~~~-~~~ 244 (360)
T 1piw_A 176 GCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKM--------GAD-HYIATLEEGDWGEKYF-DTF 244 (360)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH--------TCS-EEEEGGGTSCHHHHSC-SCE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHc--------CCC-EEEcCcCchHHHHHhh-cCC
Confidence 345788999999865 77777777752 33899999999888887763 111 12211111 11 011 469
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
|+|+..-.-. +...++...+.|++||+++...
T Consensus 245 D~vid~~g~~----~~~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 245 DLIVVCASSL----TDIDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp EEEEECCSCS----TTCCTTTGGGGEEEEEEEEECC
T ss_pred CEEEECCCCC----cHHHHHHHHHHhcCCCEEEEec
Confidence 9998654320 0123567788999999988754
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=0.38 Score=43.39 Aligned_cols=96 Identities=14% Similarity=0.103 Sum_probs=62.6
Q ss_pred cccCCCeEEEEc--CCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CCC
Q 020307 158 KSAQGGLLVDVS--CGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FAS 230 (328)
Q Consensus 158 ~~~~~~~vLDiG--cG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~ 230 (328)
...++.+||-+| .|.|..+..+++.. +.+|+++|.+++.++.+++. ... .++..+-.++. ...
T Consensus 160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~--------Ga~-~~~~~~~~~~~~~~~~~~~ 229 (362)
T 2c0c_A 160 GLSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSL--------GCD-RPINYKTEPVGTVLKQEYP 229 (362)
T ss_dssp CCCTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT--------TCS-EEEETTTSCHHHHHHHHCT
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHc--------CCc-EEEecCChhHHHHHHHhcC
Confidence 345788999999 34577877777763 34899999998888877652 111 12211111110 012
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+.+|+|+..-. . ..++.+.+.|+++|++++...
T Consensus 230 ~g~D~vid~~g-----~--~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 230 EGVDVVYESVG-----G--AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp TCEEEEEECSC-----T--HHHHHHHHHEEEEEEEEECCC
T ss_pred CCCCEEEECCC-----H--HHHHHHHHHHhcCCEEEEEeC
Confidence 46899886543 2 468889999999999887654
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=92.80 E-value=0.38 Score=43.88 Aligned_cols=45 Identities=9% Similarity=0.112 Sum_probs=33.8
Q ss_pred CCeEEEEcCCcCHHHHHHHHh-------CCCceEEEEeCCHHHHHHHHHHHH
Q 020307 162 GGLLVDVSCGSGLFSRKFAKS-------GTYSGVVALDFSENMLRQCYDFIK 206 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~-------~~~~~v~g~D~s~~~~~~a~~~~~ 206 (328)
.-.|+|+|.|+|.++..+.+. ....+++.||+|+...+.=++++.
T Consensus 81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~ 132 (387)
T 1zkd_A 81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 132 (387)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence 457999999999998777643 123489999999988775555543
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=92.63 E-value=0.16 Score=45.23 Aligned_cols=46 Identities=20% Similarity=0.386 Sum_probs=40.8
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCH---HHHHHHHHHHHh
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE---NMLRQCYDFIKQ 207 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~---~~~~~a~~~~~~ 207 (328)
.++..|||.=||+|..+....+.+. +++|+|+++ ..++.+++++..
T Consensus 241 ~~~~~vlDpF~GsGtt~~aa~~~~r--~~ig~e~~~~~~~~~~~~~~Rl~~ 289 (319)
T 1eg2_A 241 HPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTFLQD 289 (319)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHHC--
T ss_pred CCCCEEEecCCCCCHHHHHHHHcCC--cEEEEECCccHHHHHHHHHHHHHH
Confidence 5788999999999999999999876 999999999 999999998754
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=92.54 E-value=2 Score=32.61 Aligned_cols=91 Identities=11% Similarity=0.090 Sum_probs=58.7
Q ss_pred CCeEEEEcCCc-CH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----CCCCccce
Q 020307 162 GGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA 235 (328)
Q Consensus 162 ~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~ 235 (328)
..+|+=+|+|. |. ++..|.+.+. +|+++|.+++.++.+++ .++.++.+|..+.. ..-..+|+
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~--~v~vid~~~~~~~~~~~----------~g~~~i~gd~~~~~~l~~a~i~~ad~ 74 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI--PLVVIETSRTRVDELRE----------RGVRAVLGNAANEEIMQLAHLECAKW 74 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHH----------TTCEEEESCTTSHHHHHHTTGGGCSE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHH----------cCCCEEECCCCCHHHHHhcCcccCCE
Confidence 35799999975 43 3444445555 99999999998887764 25677888876532 11246788
Q ss_pred EEeccccccCCChH--HHHHHHHhcccCCcEEEEEE
Q 020307 236 VHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~ 269 (328)
|+... ++.. ..+-...+.+.|+..++...
T Consensus 75 vi~~~-----~~~~~n~~~~~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 75 LILTI-----PNGYEAGEIVASARAKNPDIEIIARA 105 (140)
T ss_dssp EEECC-----SCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred EEEEC-----CChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 77543 3333 22344566677888777655
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.51 Score=42.14 Aligned_cols=94 Identities=15% Similarity=0.077 Sum_probs=62.4
Q ss_pred cccCCCeEEEEcC--CcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------
Q 020307 158 KSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------- 227 (328)
Q Consensus 158 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------- 227 (328)
...++.+||-+|+ |.|..+..+++.. +.+|+++|.+++.++.+++. ... .. .|..+..
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~--------ga~-~~--~d~~~~~~~~~~~~~ 230 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKAL--------GAD-ET--VNYTHPDWPKEVRRL 230 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH--------TCS-EE--EETTSTTHHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc--------CCC-EE--EcCCcccHHHHHHHH
Confidence 3457889999998 4577777777653 34999999999988887642 111 11 2332211
Q ss_pred CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 228 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.....+|+|+..-. . ..++.+.+.|+++|+++....
T Consensus 231 ~~~~~~d~vi~~~g-~------~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T 2eih_A 231 TGGKGADKVVDHTG-A------LYFEGVIKATANGGRIAIAGA 266 (343)
T ss_dssp TTTTCEEEEEESSC-S------SSHHHHHHHEEEEEEEEESSC
T ss_pred hCCCCceEEEECCC-H------HHHHHHHHhhccCCEEEEEec
Confidence 11246999986554 2 247788899999999887653
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.30 E-value=0.37 Score=42.29 Aligned_cols=72 Identities=14% Similarity=0.024 Sum_probs=54.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC----CCccc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA----SGFVD 234 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~----~~~fD 234 (328)
....+++|+=||.|.+...+.+.|.... +.++|+++...+.-+.+ .+...++.+|+.++... .+.+|
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N--------~~~~~~~~~DI~~i~~~~i~~~~~~D 85 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVR--------HQGKIMYVGDVRSVTQKHIQEWGPFD 85 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHH--------TTTCEEEECCGGGCCHHHHHHTCCCS
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHh--------CCCCceeCCChHHccHHHhcccCCcC
Confidence 3456899999999999999999876333 69999999988776665 34456788998776421 13689
Q ss_pred eEEec
Q 020307 235 AVHAG 239 (328)
Q Consensus 235 ~i~~~ 239 (328)
+++..
T Consensus 86 ll~gg 90 (295)
T 2qrv_A 86 LVIGG 90 (295)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99975
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=92.28 E-value=0.51 Score=44.02 Aligned_cols=95 Identities=16% Similarity=0.220 Sum_probs=62.4
Q ss_pred cccCCCeEEEEcC-C-cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------
Q 020307 158 KSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------- 227 (328)
Q Consensus 158 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------- 227 (328)
...++.+||-+|+ | .|.++..+++.. +.++++++.+++-++.+++. ... .++...-.++.
T Consensus 225 ~~~~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~~~l--------Ga~-~vi~~~~~d~~~~~~~~~~ 294 (456)
T 3krt_A 225 GMKQGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEICRAM--------GAE-AIIDRNAEGYRFWKDENTQ 294 (456)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH--------TCC-EEEETTTTTCCSEEETTEE
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHhh--------CCc-EEEecCcCccccccccccc
Confidence 4567899999997 4 377888888764 45899999999888888653 111 11111111100
Q ss_pred ---------------CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 228 ---------------FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 228 ---------------~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.....+|+|+-.-. ...+....+.|++||++++..
T Consensus 295 ~~~~~~~~~~~i~~~t~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 295 DPKEWKRFGKRIRELTGGEDIDIVFEHPG-------RETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp CHHHHHHHHHHHHHHHTSCCEEEEEECSC-------HHHHHHHHHHEEEEEEEEESC
T ss_pred chHHHHHHHHHHHHHhCCCCCcEEEEcCC-------chhHHHHHHHhhCCcEEEEEe
Confidence 01246898885332 256888999999999998854
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=92.25 E-value=0.53 Score=42.09 Aligned_cols=90 Identities=13% Similarity=0.172 Sum_probs=59.6
Q ss_pred CCCeEEEEc-CCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CC-----CCCCc
Q 020307 161 QGGLLVDVS-CGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-----FASGF 232 (328)
Q Consensus 161 ~~~~vLDiG-cG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-----~~~~~ 232 (328)
++.+||-+| +|. |.++..+++.. +.+|+++|.+++.++.+++. ... .++ |..+ +. ...+.
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l--------Ga~-~vi--~~~~~~~~~~~~~~~~g 217 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKKM--------GAD-IVL--NHKESLLNQFKTQGIEL 217 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHHH--------TCS-EEE--CTTSCHHHHHHHHTCCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc--------CCc-EEE--ECCccHHHHHHHhCCCC
Confidence 688999994 554 77777777763 34999999999988888763 111 111 1111 10 12346
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT 268 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~ 268 (328)
+|+|+-... -...+..+.+.|+++|+++..
T Consensus 218 ~Dvv~d~~g------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 218 VDYVFCTFN------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp EEEEEESSC------HHHHHHHHHHHEEEEEEEEES
T ss_pred ccEEEECCC------chHHHHHHHHHhccCCEEEEE
Confidence 898885432 245578899999999999764
|
| >1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A | Back alignment and structure |
|---|
Probab=92.21 E-value=0.071 Score=34.56 Aligned_cols=31 Identities=13% Similarity=0.358 Sum_probs=20.8
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
..+.||.|++.-+..+. ..+.+.|..||..+
T Consensus 10 ~~~~Cp~C~~~~lv~D~--------~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 10 PRVTCPNHPDAILVEDY--------RAGDMICPECGLVV 40 (58)
T ss_dssp SCCSBTTBSSSCCEECS--------SSCCEECTTTCCEE
T ss_pred ccccCcCCCCCceeEeC--------CCCeEEeCCCCCEE
Confidence 34579999983332221 23789999998776
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=92.13 E-value=0.68 Score=39.40 Aligned_cols=101 Identities=21% Similarity=0.299 Sum_probs=67.7
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC---------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--------- 228 (328)
.++++|-.|++.|- ++..|++.|. +|+.+|.+++.++...+.+ ..++.++.+|+.+..-
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEF-------GPRVHALRSDIADLNEIAVLGAAAG 77 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCcceEEEccCCCHHHHHHHHHHHH
Confidence 56789999977653 4556666666 9999999998877666544 2368889999876431
Q ss_pred -CCCccceEEeccccccCC-----Ch--------------HHHHHHHHhcccCCcEEEEEEe
Q 020307 229 -ASGFVDAVHAGAALHCWP-----SP--------------SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 229 -~~~~fD~i~~~~vl~h~~-----d~--------------~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.-+.+|+++.+..+.... ++ ..+.+.+.+.++++|.++....
T Consensus 78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 139 (255)
T 4eso_A 78 QTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS 139 (255)
T ss_dssp HHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 014689999876554321 11 1245667777778888776654
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.04 E-value=0.27 Score=43.75 Aligned_cols=89 Identities=15% Similarity=0.102 Sum_probs=54.0
Q ss_pred CCCeEEEEecCCC-CC-CCCCccceEEecccccc-----C---------CChHHHHHHHHhcccCCcEEEEEEeccCCCC
Q 020307 213 TSNLALVRADVCR-LP-FASGFVDAVHAGAALHC-----W---------PSPSNAVAEISRILRSGGVFVGTTFLRYTSS 276 (328)
Q Consensus 213 ~~~i~~~~~d~~~-lp-~~~~~fD~i~~~~vl~h-----~---------~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~ 276 (328)
.....++++|..+ +. +++++||+|++.=-... . ......++++.++|||||.+++.........
T Consensus 12 ~~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g 91 (323)
T 1boo_A 12 TSNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKG 91 (323)
T ss_dssp CSSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETT
T ss_pred cCCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCC
Confidence 3467788888743 33 45788999998622111 1 1245788999999999999999764321000
Q ss_pred cchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 277 TSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
.+. ...+....+.++++..||....
T Consensus 92 ~~~------------~~~~~~~~i~~~~~~~Gf~~~~ 116 (323)
T 1boo_A 92 VPA------------RSIYNFRVLIRMIDEVGFFLAE 116 (323)
T ss_dssp EEE------------ECCHHHHHHHHHHHTTCCEEEE
T ss_pred Ccc------------cccchHHHHHHHHHhCCCEEEE
Confidence 000 0011223455678899997654
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=91.96 E-value=1 Score=38.26 Aligned_cols=106 Identities=16% Similarity=0.284 Sum_probs=69.8
Q ss_pred CCCeEEEEcCC--cCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC-
Q 020307 161 QGGLLVDVSCG--SGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA- 229 (328)
Q Consensus 161 ~~~~vLDiGcG--~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~- 229 (328)
.++++|-.|++ .|. ++..|++.+. +|+.++.+....+.+.+.....+ ..++.++.+|+.+.. +.
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~ 80 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTLD---RNDSIILPCDVTNDAEIETCFAS 80 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTSS---SCCCEEEECCCSSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhcC---CCCceEEeCCCCCHHHHHHHHHH
Confidence 46789999976 332 5677777776 89999988766666555554432 347899999997643 10
Q ss_pred ----CCccceEEecccccc----C-----CChH--------------HHHHHHHhcccCCcEEEEEEec
Q 020307 230 ----SGFVDAVHAGAALHC----W-----PSPS--------------NAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 230 ----~~~fD~i~~~~vl~h----~-----~d~~--------------~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
-+.+|+++.+..+.+ . .++. .+++.+...++++|.++.....
T Consensus 81 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~ 149 (266)
T 3oig_A 81 IKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYL 149 (266)
T ss_dssp HHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred HHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 146899987765433 1 1111 2456777788888888776643
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.90 E-value=0.51 Score=41.70 Aligned_cols=95 Identities=18% Similarity=0.137 Sum_probs=57.9
Q ss_pred ccccCCCeEEEEc-CCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCCCCCcc
Q 020307 157 FKSAQGGLLVDVS-CGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFV 233 (328)
Q Consensus 157 l~~~~~~~vLDiG-cG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~f 233 (328)
....++.+||-+| +|. |.++..+++.. +.+|++++ +++..+.+++. + .. .++..+-.+ +.-.-..+
T Consensus 148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~-~~~~~~~~~~l----G----a~-~~i~~~~~~~~~~~~~g~ 216 (321)
T 3tqh_A 148 AEVKQGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTA-SKRNHAFLKAL----G----AE-QCINYHEEDFLLAISTPV 216 (321)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEE-CHHHHHHHHHH----T----CS-EEEETTTSCHHHHCCSCE
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEe-ccchHHHHHHc----C----CC-EEEeCCCcchhhhhccCC
Confidence 3456789999997 554 88888888774 44899998 45546666542 1 11 122111111 11111468
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
|+|+-.-. . ..+....+.|+++|+++...
T Consensus 217 D~v~d~~g-----~--~~~~~~~~~l~~~G~iv~~g 245 (321)
T 3tqh_A 217 DAVIDLVG-----G--DVGIQSIDCLKETGCIVSVP 245 (321)
T ss_dssp EEEEESSC-----H--HHHHHHGGGEEEEEEEEECC
T ss_pred CEEEECCC-----c--HHHHHHHHhccCCCEEEEeC
Confidence 88885332 2 23488899999999998753
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.85 E-value=0.34 Score=43.50 Aligned_cols=94 Identities=14% Similarity=0.040 Sum_probs=61.8
Q ss_pred cccCCCeEEEEcC-C-cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-------
Q 020307 158 KSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF------- 228 (328)
Q Consensus 158 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~------- 228 (328)
...++.+||-+|+ | .|..+..+++.. +.+|+++|.+++.++.+++. .... .+ |.....+
T Consensus 164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l--------Ga~~-~~--~~~~~~~~~~~~~~ 231 (353)
T 4dup_A 164 GLTEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACERL--------GAKR-GI--NYRSEDFAAVIKAE 231 (353)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH--------TCSE-EE--ETTTSCHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc--------CCCE-EE--eCCchHHHHHHHHH
Confidence 4567889999953 3 377777777763 34999999999988888763 1111 11 2211110
Q ss_pred CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 229 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
..+.+|+|+..-.- ..+....+.|+++|++++...
T Consensus 232 ~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 232 TGQGVDIILDMIGA-------AYFERNIASLAKDGCLSIIAF 266 (353)
T ss_dssp HSSCEEEEEESCCG-------GGHHHHHHTEEEEEEEEECCC
T ss_pred hCCCceEEEECCCH-------HHHHHHHHHhccCCEEEEEEe
Confidence 13468998865432 257788899999999888654
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=91.82 E-value=0.25 Score=44.25 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=80.1
Q ss_pred CeEEEEcCCcCHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCCCccceEEe
Q 020307 163 GLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVHA 238 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~i~~ 238 (328)
.+++|+-||.|.+...+...|.. ..+.++|+++...+.-+.+ .+...++.+|+.++. ++...+|+++.
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N--------~~~~~~~~~DI~~~~~~~~~~~~~D~l~g 75 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHN--------FPETNLLNRNIQQLTPQVIKKWNVDTILM 75 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH--------CTTSCEECCCGGGCCHHHHHHTTCCEEEE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHh--------CCCCceeccccccCCHHHhccCCCCEEEe
Confidence 47999999999999999988742 3588999999988887776 334456778887664 22336899986
Q ss_pred ccccc---------cCCChH-HHHHHHHhc---cc-CCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHH
Q 020307 239 GAALH---------CWPSPS-NAVAEISRI---LR-SGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLC 304 (328)
Q Consensus 239 ~~vl~---------h~~d~~-~~l~~~~r~---Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 304 (328)
..--. ...|+. .++.++.++ ++ | .+++.+.... +... -+.+.+.+.|
T Consensus 76 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P--~~~vlENV~g-----l~~~------------~~~~~i~~~l 136 (333)
T 4h0n_A 76 SPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNV--DYILMENVKG-----FENS------------TVRNLFIDKL 136 (333)
T ss_dssp CCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTC--CEEEEEECTT-----GGGS------------HHHHHHHHHH
T ss_pred cCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCC--CEEEEecchh-----hhhh------------hHHHHHHHHH
Confidence 43221 123443 234444444 44 5 4555554332 1000 0135788899
Q ss_pred HHCCCeEEEEE
Q 020307 305 TSCGLTNYTSK 315 (328)
Q Consensus 305 ~~~Gf~~v~~~ 315 (328)
++.|+.+....
T Consensus 137 ~~~GY~v~~~v 147 (333)
T 4h0n_A 137 KECNFIYQEFL 147 (333)
T ss_dssp HHTTEEEEEEE
T ss_pred HhCCCeEEEEE
Confidence 99999876643
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.61 E-value=1.7 Score=37.66 Aligned_cols=78 Identities=17% Similarity=0.186 Sum_probs=55.5
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C----C----
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P----F---- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p----~---- 228 (328)
.+++||-.|++.|. ++..|++.|. +|+.++.++...+.+.+.+...+ ..++.++.+|+.+. . +
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dl~~~~~~v~~~~~~~ 85 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNSN---HENVVFHQLDVTDPIATMSSLADFI 85 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT---CCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CCceEEEEccCCCcHHHHHHHHHHH
Confidence 46788888876552 4555666665 99999999988887777776543 45799999999775 2 0
Q ss_pred --CCCccceEEeccccc
Q 020307 229 --ASGFVDAVHAGAALH 243 (328)
Q Consensus 229 --~~~~fD~i~~~~vl~ 243 (328)
.-+.+|+++.+..+.
T Consensus 86 ~~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 86 KTHFGKLDILVNNAGVA 102 (311)
T ss_dssp HHHHSSCCEEEECCCCC
T ss_pred HHhCCCCCEEEECCccc
Confidence 014789999887654
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=91.57 E-value=1.3 Score=37.60 Aligned_cols=79 Identities=23% Similarity=0.340 Sum_probs=57.6
Q ss_pred CCCeEEEEcC-CcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC--
Q 020307 161 QGGLLVDVSC-GSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 229 (328)
Q Consensus 161 ~~~~vLDiGc-G~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 229 (328)
.++++|-.|+ |.|. ++..|++.+. +|+.+|.+...++...+.+...+ ..++.++.+|+.+.. +.
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADLG---LGRVEAVVCDVTSTEAVDALITQT 95 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTC---SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC---CCceEEEEeCCCCHHHHHHHHHHH
Confidence 5678999997 5553 5677777776 89999999988888777775543 458999999997642 00
Q ss_pred ---CCccceEEecccccc
Q 020307 230 ---SGFVDAVHAGAALHC 244 (328)
Q Consensus 230 ---~~~fD~i~~~~vl~h 244 (328)
-+.+|+++.+..+..
T Consensus 96 ~~~~g~id~li~~Ag~~~ 113 (266)
T 3o38_A 96 VEKAGRLDVLVNNAGLGG 113 (266)
T ss_dssp HHHHSCCCEEEECCCCCC
T ss_pred HHHhCCCcEEEECCCcCC
Confidence 136899998876543
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=91.44 E-value=0.2 Score=44.85 Aligned_cols=93 Identities=13% Similarity=0.082 Sum_probs=60.9
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-------
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF------- 228 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~------- 228 (328)
.. ++.+||-+|+|. |.++..+++.. +. +|+++|.+++.++.+++. . ..+ .|..+..+
T Consensus 162 ~~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l-a---------~~v--~~~~~~~~~~~~~~~ 227 (343)
T 2dq4_A 162 GV-SGKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-A---------DRL--VNPLEEDLLEVVRRV 227 (343)
T ss_dssp CC-TTSCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT-C---------SEE--ECTTTSCHHHHHHHH
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-H---------Hhc--cCcCccCHHHHHHHh
Confidence 44 788999999865 77777777764 44 899999998877666542 1 111 12211110
Q ss_pred CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 229 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
....+|+|+..-. . ...++...+.|+++|+++....
T Consensus 228 ~~~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 228 TGSGVEVLLEFSG-----N-EAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp HSSCEEEEEECSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred cCCCCCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEec
Confidence 0235898885432 2 2457889999999999887643
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.43 E-value=0.67 Score=41.90 Aligned_cols=93 Identities=15% Similarity=0.129 Sum_probs=58.2
Q ss_pred ccCCCeEEEEc-CCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-----CCC
Q 020307 159 SAQGGLLVDVS-CGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----ASG 231 (328)
Q Consensus 159 ~~~~~~vLDiG-cG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-----~~~ 231 (328)
..++.+||-.| +|. |.++..+++.. +.+|++++ +++..+.+++. + .. .++ |..+..+ ...
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~Vi~~~-~~~~~~~~~~l----G----a~-~v~--~~~~~~~~~~~~~~~ 247 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAW-DAHVTAVC-SQDASELVRKL----G----AD-DVI--DYKSGSVEEQLKSLK 247 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHHT----T----CS-EEE--ETTSSCHHHHHHTSC
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEe-ChHHHHHHHHc----C----CC-EEE--ECCchHHHHHHhhcC
Confidence 45788999999 443 77777777763 35899998 66666666431 1 11 112 2211110 114
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.+|+|+-.- ..+...+....+.|+++|+++...
T Consensus 248 g~D~vid~~-----g~~~~~~~~~~~~l~~~G~iv~~g 280 (375)
T 2vn8_A 248 PFDFILDNV-----GGSTETWAPDFLKKWSGATYVTLV 280 (375)
T ss_dssp CBSEEEESS-----CTTHHHHGGGGBCSSSCCEEEESC
T ss_pred CCCEEEECC-----CChhhhhHHHHHhhcCCcEEEEeC
Confidence 688887433 344345678888999999988754
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=91.39 E-value=1.5 Score=38.07 Aligned_cols=105 Identities=11% Similarity=0.158 Sum_probs=68.7
Q ss_pred cCCCeEEEEcCCcC-----HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C-
Q 020307 160 AQGGLLVDVSCGSG-----LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F- 228 (328)
Q Consensus 160 ~~~~~vLDiGcG~G-----~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~- 228 (328)
..++++|-.|++.| .++..|++.|. +|+.++.++...+.+.+.... ..++.++.+|+.+.. +
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~ 101 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEE-----LGAFVAGHCDVADAASIDAVFE 101 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHH-----HTCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHh-----cCCceEEECCCCCHHHHHHHHH
Confidence 35778999997633 35667777776 899999987655555544443 336788899987642 0
Q ss_pred ----CCCccceEEecccccc----C-----CCh--------------HHHHHHHHhcccCCcEEEEEEec
Q 020307 229 ----ASGFVDAVHAGAALHC----W-----PSP--------------SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 229 ----~~~~fD~i~~~~vl~h----~-----~d~--------------~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
.-+.+|+++.+..+.. . .++ ..+++.+.+.++.+|.++.....
T Consensus 102 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~ 171 (293)
T 3grk_A 102 TLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYY 171 (293)
T ss_dssp HHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECG
T ss_pred HHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeh
Confidence 1147899998766542 1 111 13456777778888888776643
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=91.33 E-value=1.7 Score=38.36 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=56.9
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C----
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 228 (328)
.+++||-.|++.|. ++..|++.|. +|++++.+++.++.+.+.+...+. ..++.++.+|+.+.. +
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEGS--GPEVMGVQLDVASREGFKMAADEVE 82 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 46789999987663 5566666776 999999999988877776655431 237889999987642 0
Q ss_pred -CCCccceEEecccccc
Q 020307 229 -ASGFVDAVHAGAALHC 244 (328)
Q Consensus 229 -~~~~fD~i~~~~vl~h 244 (328)
.-+.+|+++.+..+..
T Consensus 83 ~~~g~id~lv~nAg~~~ 99 (319)
T 3ioy_A 83 ARFGPVSILCNNAGVNL 99 (319)
T ss_dssp HHTCCEEEEEECCCCCC
T ss_pred HhCCCCCEEEECCCcCC
Confidence 0146899998876543
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=91.22 E-value=0.92 Score=42.08 Aligned_cols=98 Identities=20% Similarity=0.172 Sum_probs=62.1
Q ss_pred ccccCCCeEEEEcC-C-cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe--cCCCC------
Q 020307 157 FKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA--DVCRL------ 226 (328)
Q Consensus 157 l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~--d~~~l------ 226 (328)
....++.+||-.|+ | .|..+..+++.. +.++++++.+++.++.+++. + ....+... |+...
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~~~~~~~~~~~~l----G----a~~~i~~~~~~~~~~~~~~~~ 286 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSAQKEAAVRAL----G----CDLVINRAELGITDDIADDPR 286 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T----CCCEEEHHHHTCCTTGGGCHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc----C----CCEEEeccccccccccccccc
Confidence 34567899999997 3 377777777763 45899999999888877642 1 11111111 11000
Q ss_pred --------------CCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 227 --------------PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 227 --------------p~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
......+|+|+-.-. . ..++...+.|++||+++....
T Consensus 287 ~~~~~~~~~~~~v~~~~g~g~Dvvid~~G-----~--~~~~~~~~~l~~~G~iv~~G~ 337 (447)
T 4a0s_A 287 RVVETGRKLAKLVVEKAGREPDIVFEHTG-----R--VTFGLSVIVARRGGTVVTCGS 337 (447)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSEEEECSC-----H--HHHHHHHHHSCTTCEEEESCC
T ss_pred ccchhhhHHHHHHHHHhCCCceEEEECCC-----c--hHHHHHHHHHhcCCEEEEEec
Confidence 000246899886443 1 357888899999999988653
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.17 E-value=0.31 Score=43.16 Aligned_cols=93 Identities=12% Similarity=0.085 Sum_probs=60.4
Q ss_pred cccCCCeEEEEcC--CcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-------
Q 020307 158 KSAQGGLLVDVSC--GSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------- 227 (328)
Q Consensus 158 ~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------- 227 (328)
...++.+||-.|+ |.|..+..+++. +. +|+++|.+++.++.+++. .... . .|..+..
T Consensus 137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~--~V~~~~~~~~~~~~~~~~--------g~~~-~--~~~~~~~~~~~~~~ 203 (327)
T 1qor_A 137 EIKPDEQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKA--------GAWQ-V--INYREEDLVERLKE 203 (327)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHH--------TCSE-E--EETTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHc--------CCCE-E--EECCCccHHHHHHH
Confidence 4457889999994 346666555554 54 999999999888877652 1111 1 1322111
Q ss_pred -CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 228 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 228 -~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.....+|+++.+.. ...++.+.+.|+++|+++....
T Consensus 204 ~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 204 ITGGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp HTTTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECCC
T ss_pred HhCCCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEEec
Confidence 11236899886543 2357888999999999887654
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=90.98 E-value=0.6 Score=41.90 Aligned_cols=94 Identities=10% Similarity=-0.029 Sum_probs=60.4
Q ss_pred cccCCCeEEEEcC--CcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------
Q 020307 158 KSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------- 227 (328)
Q Consensus 158 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------- 227 (328)
...++.+||-.|+ |.|..+..+++.. +.+|+++|.+++.++.+++. .... . .|..+..
T Consensus 159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~--------g~~~-~--~~~~~~~~~~~~~~~ 226 (354)
T 2j8z_A 159 NVQAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEKL--------GAAA-G--FNYKKEDFSEATLKF 226 (354)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH--------TCSE-E--EETTTSCHHHHHHHH
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc--------CCcE-E--EecCChHHHHHHHHH
Confidence 3457889999984 3466666666653 34999999999888877542 1111 1 2222111
Q ss_pred CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 228 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.....+|+++.+-.- + .+....+.|+++|++++...
T Consensus 227 ~~~~~~d~vi~~~G~-----~--~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 227 TKGAGVNLILDCIGG-----S--YWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp TTTSCEEEEEESSCG-----G--GHHHHHHHEEEEEEEEECCC
T ss_pred hcCCCceEEEECCCc-----h--HHHHHHHhccCCCEEEEEec
Confidence 112368998865432 2 47788899999999888654
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=90.84 E-value=0.16 Score=44.48 Aligned_cols=92 Identities=17% Similarity=0.087 Sum_probs=59.1
Q ss_pred ccCCCeEEEEcC--CcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCCC--CCcc
Q 020307 159 SAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFA--SGFV 233 (328)
Q Consensus 159 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~--~~~f 233 (328)
..++.+||-+|+ |.|..+..+++.. +.+|+++|.+++.++.+++. ... ..+ |..+ ..+. -+.+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~--------ga~-~~~--~~~~~~~~~~~~~~~ 190 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLAL--------GAE-EAA--TYAEVPERAKAWGGL 190 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHT--------TCS-EEE--EGGGHHHHHHHTTSE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc--------CCC-EEE--ECCcchhHHHHhcCc
Confidence 457889999998 3477777777763 34999999999888777542 111 112 2211 0000 0468
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
|+|+. -. . ..++...+.|+++|+++....
T Consensus 191 d~vid-~g-----~--~~~~~~~~~l~~~G~~v~~g~ 219 (302)
T 1iz0_A 191 DLVLE-VR-----G--KEVEESLGLLAHGGRLVYIGA 219 (302)
T ss_dssp EEEEE-CS-----C--TTHHHHHTTEEEEEEEEEC--
T ss_pred eEEEE-CC-----H--HHHHHHHHhhccCCEEEEEeC
Confidence 99886 32 2 357888999999999887543
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=90.83 E-value=0.15 Score=46.51 Aligned_cols=102 Identities=18% Similarity=0.158 Sum_probs=56.8
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
.++.+|+-+|+|. |......++.. +.+|+++|.+++.++.+++.+. ..+.....+...+.-.-...|+|+.
T Consensus 166 l~g~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~~~~l~~~~~~~g-------~~~~~~~~~~~~l~~~l~~aDvVi~ 237 (377)
T 2vhw_A 166 VEPADVVVIGAGTAGYNAARIANGM-GATVTVLDINIDKLRQLDAEFC-------GRIHTRYSSAYELEGAVKRADLVIG 237 (377)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTT-------TSSEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhcC-------CeeEeccCCHHHHHHHHcCCCEEEE
Confidence 4678999999865 44444444432 3499999999988777765321 1221111111111100125799987
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.-.......+.-+.++..+.+||||+++-..
T Consensus 238 ~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 238 AVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp CCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 4322211122223466778899999887654
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=90.71 E-value=0.67 Score=41.39 Aligned_cols=93 Identities=14% Similarity=0.024 Sum_probs=60.7
Q ss_pred ccccCCCeEEEEcC-C-cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC------C
Q 020307 157 FKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------F 228 (328)
Q Consensus 157 l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~ 228 (328)
....++.+||-+|+ | .|.++..+++.. +.+|+++ .+++.++.+++. . ...+. +-.++. .
T Consensus 146 ~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~l--------G--a~~i~-~~~~~~~~~~~~~ 212 (343)
T 3gaz_A 146 AQVQDGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSDLEYVRDL--------G--ATPID-ASREPEDYAAEHT 212 (343)
T ss_dssp TCCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHHHHH--------T--SEEEE-TTSCHHHHHHHHH
T ss_pred cCCCCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHHHHc--------C--CCEec-cCCCHHHHHHHHh
Confidence 34567899999994 4 377777777763 4489999 888888777653 1 11222 211111 1
Q ss_pred CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 229 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
....+|+|+-.-. . ..+....+.|+++|++++..
T Consensus 213 ~~~g~D~vid~~g-----~--~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 213 AGQGFDLVYDTLG-----G--PVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp TTSCEEEEEESSC-----T--HHHHHHHHHEEEEEEEEESC
T ss_pred cCCCceEEEECCC-----c--HHHHHHHHHHhcCCeEEEEc
Confidence 1246898885432 2 46888899999999988754
|
| >2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5 | Back alignment and structure |
|---|
Probab=90.67 E-value=0.13 Score=38.59 Aligned_cols=30 Identities=23% Similarity=0.575 Sum_probs=24.8
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCcccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (328)
.+-.||.|++.....+. ..+.|+.|++.+.
T Consensus 26 ~lP~CP~C~seytYeDg----------~l~vCPeC~hEW~ 55 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDG----------ALLVCPECAHEWS 55 (138)
T ss_dssp CSCCCTTTCCCCCEECS----------SSEEETTTTEEEC
T ss_pred cCCCCCCCCCcceEecC----------CeEECCccccccC
Confidence 45679999999877664 4899999999884
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=90.51 E-value=0.61 Score=41.38 Aligned_cols=94 Identities=14% Similarity=0.107 Sum_probs=61.3
Q ss_pred cccCCCeEEEEcC--CcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------
Q 020307 158 KSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------- 227 (328)
Q Consensus 158 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------- 227 (328)
...++.+||-.|+ |.|..+..+++.. +.+|+++|.+++.++.+++. .... . .|..+..
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~--------g~~~-~--~d~~~~~~~~~i~~~ 209 (333)
T 1wly_A 142 KVKPGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARKL--------GCHH-T--INYSTQDFAEVVREI 209 (333)
T ss_dssp CCCTTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH--------TCSE-E--EETTTSCHHHHHHHH
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc--------CCCE-E--EECCCHHHHHHHHHH
Confidence 3457889999995 4577666666653 34999999999888777652 1111 1 2332211
Q ss_pred CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 228 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.....+|+|+.+.. . ..++...+.|+++|+++....
T Consensus 210 ~~~~~~d~vi~~~g-----~--~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 210 TGGKGVDVVYDSIG-----K--DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp HTTCCEEEEEECSC-----T--TTHHHHHHTEEEEEEEEECCC
T ss_pred hCCCCCeEEEECCc-----H--HHHHHHHHhhccCCEEEEEec
Confidence 01236899886543 2 357888999999999887654
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.45 E-value=1.8 Score=37.22 Aligned_cols=104 Identities=20% Similarity=0.197 Sum_probs=68.8
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCC------------HHHHHHHHHHHHhcCcCCCCCeEEEEecCCC
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFS------------ENMLRQCYDFIKQDNTILTSNLALVRADVCR 225 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s------------~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 225 (328)
.++++|-.|++.|- ++..|++.|. +|+.+|.+ ...++.+...+... ..++.++.+|+.+
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~ 82 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKT----GRKAYTAEVDVRD 82 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT----TSCEEEEECCTTC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhc----CCceEEEEccCCC
Confidence 57789999977652 5566666676 89999987 66666665555443 4578899999876
Q ss_pred CC-----CC-----CCccceEEeccccccCC---Ch--------------HHHHHHHHhcccCCcEEEEEEe
Q 020307 226 LP-----FA-----SGFVDAVHAGAALHCWP---SP--------------SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 226 lp-----~~-----~~~fD~i~~~~vl~h~~---d~--------------~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.. +. -+.+|+++.+..+.... +. ..+++.+.+.++.+|.++....
T Consensus 83 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 154 (287)
T 3pxx_A 83 RAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS 154 (287)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence 42 00 13689999876653321 11 1345677777888888776553
|
| >3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} | Back alignment and structure |
|---|
Probab=90.28 E-value=0.15 Score=34.37 Aligned_cols=30 Identities=23% Similarity=0.692 Sum_probs=21.9
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
..+.||.|+..-..... .+++.|..|+..+
T Consensus 25 ~ky~C~fCgk~~vkR~a---------~GIW~C~~C~~~~ 54 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGA---------AGIWTCSCCKKTV 54 (72)
T ss_dssp SCBCCSSCCSSCBSBCS---------SSCBCCSSSCCCC
T ss_pred cCccCCCCCCceeEecC---------CCeEECCCCCCEE
Confidence 45789999986433322 2799999998765
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=90.27 E-value=0.53 Score=43.52 Aligned_cols=46 Identities=11% Similarity=0.244 Sum_probs=35.2
Q ss_pred CCeEEEEcCCcCHHHHHHHHh----CC-CceEEEEeCCHHHHHHHHHHHHh
Q 020307 162 GGLLVDVSCGSGLFSRKFAKS----GT-YSGVVALDFSENMLRQCYDFIKQ 207 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~----~~-~~~v~g~D~s~~~~~~a~~~~~~ 207 (328)
..+|+|+|.|+|.++..+.+. .+ ..+++.||+|+...+.=++++..
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 469999999999987776543 21 23799999999988777776654
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=90.17 E-value=1.8 Score=38.20 Aligned_cols=92 Identities=14% Similarity=0.195 Sum_probs=58.1
Q ss_pred CCeEEEEcCCc-C-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 162 GGLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 162 ~~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
..+|.=||+|. | .++..+.+.+...+|+++|.+++.++.+.+. + -+.-...|..++ .-...|+|+..
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~----G-----~~~~~~~~~~~~--~~~~aDvVila 101 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----G-----IIDEGTTSIAKV--EDFSPDFVMLS 101 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----T-----SCSEEESCTTGG--GGGCCSEEEEC
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC----C-----CcchhcCCHHHH--hhccCCEEEEe
Confidence 36899999886 3 4566677766544899999999888776542 1 111122333320 12357888865
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVG 267 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i 267 (328)
--.. ....+++++...++||.+++-
T Consensus 102 vp~~---~~~~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 102 SPVR---TFREIAKKLSYILSEDATVTD 126 (314)
T ss_dssp SCGG---GHHHHHHHHHHHSCTTCEEEE
T ss_pred CCHH---HHHHHHHHHhhccCCCcEEEE
Confidence 3322 235678889889999876544
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=90.13 E-value=0.41 Score=42.45 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=59.0
Q ss_pred cCCC-eEEEEcC-C-cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC--CCC-CCCCCcc
Q 020307 160 AQGG-LLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL-PFASGFV 233 (328)
Q Consensus 160 ~~~~-~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~l-p~~~~~f 233 (328)
.++. +||-+|+ | .|.++..+++.. +.++++++.+++.++.+++. .....+-..+. ..+ ....+.+
T Consensus 148 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~l--------Ga~~v~~~~~~~~~~~~~~~~~~~ 218 (330)
T 1tt7_A 148 SPEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQL--------GASEVISREDVYDGTLKALSKQQW 218 (330)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHH--------TCSEEEEHHHHCSSCCCSSCCCCE
T ss_pred CCCCceEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc--------CCcEEEECCCchHHHHHHhhcCCc
Confidence 3454 8999997 3 377777777652 24899999998877777652 11111111111 111 1223468
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
|+|+-.- .. ..+....+.|+++|++++...
T Consensus 219 d~vid~~-----g~--~~~~~~~~~l~~~G~iv~~G~ 248 (330)
T 1tt7_A 219 QGAVDPV-----GG--KQLASLLSKIQYGGSVAVSGL 248 (330)
T ss_dssp EEEEESC-----CT--HHHHHHHTTEEEEEEEEECCC
T ss_pred cEEEECC-----cH--HHHHHHHHhhcCCCEEEEEec
Confidence 8887543 33 368889999999999987643
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=90.07 E-value=1.5 Score=38.18 Aligned_cols=78 Identities=26% Similarity=0.268 Sum_probs=56.7
Q ss_pred cCCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-----C--
Q 020307 160 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A-- 229 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-----~-- 229 (328)
..+++||-.|++.|. ++..|++.|. +|+.++.+++.++.+.+.+... ..++.++.+|+.+..- .
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~ 102 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQ----GFDAHGVVCDVRHLDEMVRLADEA 102 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCceEEEEccCCCHHHHHHHHHHH
Confidence 357789999987652 5566666666 9999999999888877776654 4578899999876430 0
Q ss_pred ---CCccceEEeccccc
Q 020307 230 ---SGFVDAVHAGAALH 243 (328)
Q Consensus 230 ---~~~fD~i~~~~vl~ 243 (328)
.+.+|+++.+..+.
T Consensus 103 ~~~~g~id~lvnnAg~~ 119 (301)
T 3tjr_A 103 FRLLGGVDVVFSNAGIV 119 (301)
T ss_dssp HHHHSSCSEEEECCCCC
T ss_pred HHhCCCCCEEEECCCcC
Confidence 13689999876654
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=89.73 E-value=0.96 Score=40.51 Aligned_cols=95 Identities=9% Similarity=-0.019 Sum_probs=61.3
Q ss_pred cccCC--CeEEEEcCC--cCHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----
Q 020307 158 KSAQG--GLLVDVSCG--SGLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----- 227 (328)
Q Consensus 158 ~~~~~--~~vLDiGcG--~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----- 227 (328)
...++ .+||-.|++ .|..+..+++.. +. +|+++|.+++.++.+++.+ + .. . ..|..+..
T Consensus 155 ~~~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~~~---g----~~-~--~~d~~~~~~~~~~ 223 (357)
T 2zb4_A 155 HITAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTSEL---G----FD-A--AINYKKDNVAEQL 223 (357)
T ss_dssp CCCTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTS---C----CS-E--EEETTTSCHHHHH
T ss_pred CCCCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHc---C----Cc-e--EEecCchHHHHHH
Confidence 34567 899999983 366666666654 45 8999999988777665421 1 11 1 12332211
Q ss_pred --CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 228 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 228 --~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
...+.+|+++.+-. ...++...+.|+++|++++...
T Consensus 224 ~~~~~~~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G~ 261 (357)
T 2zb4_A 224 RESCPAGVDVYFDNVG-------GNISDTVISQMNENSHIILCGQ 261 (357)
T ss_dssp HHHCTTCEEEEEESCC-------HHHHHHHHHTEEEEEEEEECCC
T ss_pred HHhcCCCCCEEEECCC-------HHHHHHHHHHhccCcEEEEECC
Confidence 01126898886543 2568889999999999987653
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=89.65 E-value=0.25 Score=44.73 Aligned_cols=101 Identities=19% Similarity=0.230 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
++.+||-+|+|. |.....++.. |. +|+++|.+++.++.+++.... .+.....+...+.-.-..+|+|+.
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~Ga--~V~v~dr~~~r~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~DvVI~ 236 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGS-------RVELLYSNSAEIETAVAEADLLIG 236 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-------GSEEEECCHHHHHHHHHTCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHhhCc-------eeEeeeCCHHHHHHHHcCCCEEEE
Confidence 458999999864 4444444443 44 999999999888877765432 121221111111100125899986
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.-.......|.-+.++..+.++|||+++-...
T Consensus 237 ~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~ 268 (361)
T 1pjc_A 237 AVLVPGRRAPILVPASLVEQMRTGSVIVDVAV 268 (361)
T ss_dssp CCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred CCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence 55443222222224566788999998877554
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=89.64 E-value=3.1 Score=35.97 Aligned_cols=104 Identities=16% Similarity=0.234 Sum_probs=66.0
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHH-HHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C---
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSEN-MLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F--- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~-~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~--- 228 (328)
.++++|-.|++.|. ++..|++.|. +|+.++.+.. ..+...+.+... ..++.++.+|+.+.. +
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~ 119 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKE----GVKCVLLPGDLSDEQHCKDIVQET 119 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTT----TCCEEEEESCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHH
Confidence 57789999977652 4556666666 8999998765 333344434332 457889999987642 1
Q ss_pred --CCCccceEEeccccccCC------Ch--------------HHHHHHHHhcccCCcEEEEEEe
Q 020307 229 --ASGFVDAVHAGAALHCWP------SP--------------SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 229 --~~~~fD~i~~~~vl~h~~------d~--------------~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.-+.+|+++.+....+.. +. ..+++.+.+.++.+|.++....
T Consensus 120 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS 183 (291)
T 3ijr_A 120 VRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS 183 (291)
T ss_dssp HHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence 014689999875443221 11 1356777788888888776553
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.61 E-value=1.4 Score=39.60 Aligned_cols=95 Identities=19% Similarity=0.148 Sum_probs=58.1
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC------CCC-
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFA- 229 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l------p~~- 229 (328)
...++.+||-+|+|. |.++..+++...+.+|+++|.+++-++.+++. ... .++ |..+. ...
T Consensus 183 ~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~l--------Ga~-~vi--~~~~~~~~~v~~~~~ 251 (359)
T 1h2b_A 183 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL--------GAD-HVV--DARRDPVKQVMELTR 251 (359)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT--------TCS-EEE--ETTSCHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh--------CCC-EEE--eccchHHHHHHHHhC
Confidence 345788999999864 66667777653134899999999888887652 111 122 21110 011
Q ss_pred CCccceEEeccccccCCChH-HHHHHHHhcccCCcEEEEEEe
Q 020307 230 SGFVDAVHAGAALHCWPSPS-NAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~-~~l~~~~r~LkpgG~l~i~~~ 270 (328)
...+|+|+-.- ..+. ..+....+. ++|+++....
T Consensus 252 g~g~Dvvid~~-----G~~~~~~~~~~~~~--~~G~~v~~g~ 286 (359)
T 1h2b_A 252 GRGVNVAMDFV-----GSQATVDYTPYLLG--RMGRLIIVGY 286 (359)
T ss_dssp TCCEEEEEESS-----CCHHHHHHGGGGEE--EEEEEEECCC
T ss_pred CCCCcEEEECC-----CCchHHHHHHHhhc--CCCEEEEEeC
Confidence 22689988433 3332 146666666 9999887653
|
| >2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8 | Back alignment and structure |
|---|
Probab=89.50 E-value=0.24 Score=31.64 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=23.0
Q ss_pred CcccCcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
.++.....||.||+.+..... .+.+.|.+|+..+
T Consensus 13 ki~~~~~fCPkCG~~~~ma~~---------~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 13 KLVRKHRFCPRCGPGVFLAEH---------ADRYSCGRCGYTE 46 (55)
T ss_dssp CCCCSSCCCTTTTTTCCCEEC---------SSEEECTTTCCCE
T ss_pred EEEEccccCcCCCCceeEecc---------CCEEECCCCCCEE
Confidence 344456779999986643221 1589999997665
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=89.39 E-value=3.2 Score=35.19 Aligned_cols=106 Identities=20% Similarity=0.221 Sum_probs=71.8
Q ss_pred CCCeEEEEcCCc--C--H-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------
Q 020307 161 QGGLLVDVSCGS--G--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------- 227 (328)
Q Consensus 161 ~~~~vLDiGcG~--G--~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------- 227 (328)
+++++|--|.++ | . .+..|++.|. +|+..|.+++.++.+.+.+++.+ ..++.++.+|+.+..
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~ 79 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA--KLVFTYRKERSRKELEKLLEQLN---QPEAHLYQIDVQSDEEVINGFEQ 79 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHGGGT---CSSCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CCcEEEEEccCCCHHHHHHHHHH
Confidence 578999999643 4 3 5677778876 99999999988888887777654 557888999986632
Q ss_pred --CCCCccceEEeccccccCC---------ChH--------------HHHHHHHhcccCCcEEEEEEec
Q 020307 228 --FASGFVDAVHAGAALHCWP---------SPS--------------NAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 228 --~~~~~fD~i~~~~vl~h~~---------d~~--------------~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
-.-+..|+++.+..+.... +.+ ...+.....++.+|.++.....
T Consensus 80 ~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~ 148 (256)
T 4fs3_A 80 IGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYL 148 (256)
T ss_dssp HHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECG
T ss_pred HHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecc
Confidence 0125789998765432211 111 1234556677889988876643
|
| >1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1 | Back alignment and structure |
|---|
Probab=89.31 E-value=0.14 Score=32.98 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=21.6
Q ss_pred CcccccCCCchhhc---cCCCCccccccccCceeeCCCCcccc
Q 020307 59 DLFSCPICYEPLIR---KGPTGLTLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 59 ~~l~CP~C~~~l~~---~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (328)
....||.|+..-.. ..-. +-+.-+.-.+.|.+|++.+.
T Consensus 14 ~~~~Cp~Cg~~~~~~~q~Q~r--sadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 14 TKITCPKCGNDTAYWWEMQTR--AGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp EECCCTTTCCSEEEEEEECCS--SSSCSSEEEEEESSSCCEEE
T ss_pred eEeECCCCCCCEEEEEEeecc--cCCCCCcEEEEcCCCCCEec
Confidence 35779999984211 0100 11112334789999998763
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=89.17 E-value=5.4 Score=33.89 Aligned_cols=70 Identities=13% Similarity=0.090 Sum_probs=50.0
Q ss_pred CeEEEEcCCcCHHHHHHHHh----CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 163 GLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
.+||-.|+ |..+..+.+. +. +|++++.++....... ..++.++.+|+.++. -..+|+|+.
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~----------~~~~~~~~~D~~d~~--~~~~d~vi~ 69 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGW--RIIGTSRNPDQMEAIR----------ASGAEPLLWPGEEPS--LDGVTHLLI 69 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTC--EEEEEESCGGGHHHHH----------HTTEEEEESSSSCCC--CTTCCEEEE
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCC--EEEEEEcChhhhhhHh----------hCCCeEEEecccccc--cCCCCEEEE
Confidence 58999994 7776666553 44 8999999886554433 247889999998866 456899998
Q ss_pred ccccccCCCh
Q 020307 239 GAALHCWPSP 248 (328)
Q Consensus 239 ~~vl~h~~d~ 248 (328)
........++
T Consensus 70 ~a~~~~~~~~ 79 (286)
T 3ius_A 70 STAPDSGGDP 79 (286)
T ss_dssp CCCCBTTBCH
T ss_pred CCCccccccH
Confidence 7665544444
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=89.03 E-value=3.3 Score=35.25 Aligned_cols=105 Identities=22% Similarity=0.265 Sum_probs=68.0
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeC-CHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC--
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDF-SENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~-s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 229 (328)
.++++|-.|++.|- ++..|++.|. +|+.++. +....+...+.+... ..++.++.+|+.+.. +.
T Consensus 17 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~ 90 (270)
T 3is3_A 17 DGKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKAL----GSDAIAIKADIRQVPEIVKLFDQA 90 (270)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 56788988877653 4556666666 8888775 455555555555443 457889999987643 00
Q ss_pred ---CCccceEEeccccccCCC-----h--------------HHHHHHHHhcccCCcEEEEEEec
Q 020307 230 ---SGFVDAVHAGAALHCWPS-----P--------------SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 230 ---~~~fD~i~~~~vl~h~~d-----~--------------~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
-+..|+++.+..+.+... + ..+.+.+.+.++++|.++.....
T Consensus 91 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~ 154 (270)
T 3is3_A 91 VAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSN 154 (270)
T ss_dssp HHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCT
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 136899998766543321 1 13457777888888888776653
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.96 E-value=0.26 Score=44.73 Aligned_cols=101 Identities=17% Similarity=0.221 Sum_probs=53.9
Q ss_pred cCCCeEEEEcCCc-CHHHHHHH-HhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFA-KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~-~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
.++.+|+-+|+|. |......+ ..|. +|+++|.+++.++.+.+.. ...+.....+...+.-.-..+|+|+
T Consensus 164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga--~V~~~d~~~~~~~~~~~~~-------g~~~~~~~~~~~~l~~~~~~~DvVi 234 (369)
T 2eez_A 164 VAPASVVILGGGTVGTNAAKIALGMGA--QVTILDVNHKRLQYLDDVF-------GGRVITLTATEANIKKSVQHADLLI 234 (369)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHT-------TTSEEEEECCHHHHHHHHHHCSEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHhc-------CceEEEecCCHHHHHHHHhCCCEEE
Confidence 3568999999864 44333333 3344 9999999998777665432 1122111111111110012578887
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
..-.......+.-+.++..+.+|+||+++...
T Consensus 235 ~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 235 GAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp ECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred ECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence 65433211111123567788899999877644
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=88.89 E-value=5.1 Score=35.19 Aligned_cols=125 Identities=13% Similarity=0.154 Sum_probs=78.4
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC-CCccceEEecccc
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGAAL 242 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~i~~~~vl 242 (328)
+|||+=||-|.+..-+.+.|. .-+.++|+++...+.-+.+. .-.++.+|+.++... -..+|+++...-.
T Consensus 2 kvidLFsG~GG~~~G~~~aG~-~~v~a~e~d~~a~~ty~~N~---------~~~~~~~DI~~i~~~~~~~~D~l~ggpPC 71 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNH---------SAKLIKGDISKISSDEFPKCDGIIGGPPS 71 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTTC-EEEEEEECCTTTHHHHHHHC---------CSEEEESCGGGCCGGGSCCCSEEECCCCG
T ss_pred eEEEeCcCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHHC---------CCCcccCChhhCCHhhCCcccEEEecCCC
Confidence 799999999999999998874 45789999999888777652 235678898776421 2368998864211
Q ss_pred ---------ccCCChH-HHHHHH---HhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCC
Q 020307 243 ---------HCWPSPS-NAVAEI---SRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL 309 (328)
Q Consensus 243 ---------~h~~d~~-~~l~~~---~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf 309 (328)
.-+.|+. .++.++ .+.++|. +++.+.... ++ .+...-..+.+.+.|++.|+
T Consensus 72 Q~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk--~~~~ENV~g-----l~---------~~~~~~~~~~i~~~l~~~GY 135 (331)
T 3ubt_Y 72 QSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKG-----MM---------AQRHNKAVQEFIQEFDNAGY 135 (331)
T ss_dssp GGTEETTEECCTTCGGGHHHHHHHHHHHHHCCS--EEEEEECCG-----GG---------GCTTSHHHHHHHHHHHHHTE
T ss_pred CCcCCCCCccCCCCchhHHHHHHHHHHhccCCe--EEEeeeecc-----cc---------cccccchhhhhhhhhccCCc
Confidence 1234554 344444 4445784 444443321 00 01111223567788899999
Q ss_pred eEEEE
Q 020307 310 TNYTS 314 (328)
Q Consensus 310 ~~v~~ 314 (328)
.+...
T Consensus 136 ~v~~~ 140 (331)
T 3ubt_Y 136 DVHII 140 (331)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76554
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.84 E-value=0.38 Score=42.58 Aligned_cols=95 Identities=15% Similarity=0.112 Sum_probs=58.1
Q ss_pred cCCC-eEEEEcC-C-cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC-CC-C-CCCCCcc
Q 020307 160 AQGG-LLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CR-L-PFASGFV 233 (328)
Q Consensus 160 ~~~~-~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~-l-p~~~~~f 233 (328)
.++. +||-+|+ | .|.++..+++.. +.+|++++.+++.++.+++. + ....+-..+. .. . ....+.+
T Consensus 147 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~l----G----a~~~i~~~~~~~~~~~~~~~~~~ 217 (328)
T 1xa0_A 147 TPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVL----G----AKEVLAREDVMAERIRPLDKQRW 217 (328)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHT----T----CSEEEECC---------CCSCCE
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHc----C----CcEEEecCCcHHHHHHHhcCCcc
Confidence 3454 7999997 3 477777777763 34899999998877777652 1 1111111111 00 0 1123468
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
|+|+-.-. . ..+....+.|+++|++++...
T Consensus 218 d~vid~~g-----~--~~~~~~~~~l~~~G~~v~~G~ 247 (328)
T 1xa0_A 218 AAAVDPVG-----G--RTLATVLSRMRYGGAVAVSGL 247 (328)
T ss_dssp EEEEECST-----T--TTHHHHHHTEEEEEEEEECSC
T ss_pred cEEEECCc-----H--HHHHHHHHhhccCCEEEEEee
Confidence 98875432 2 247788899999999887643
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.82 E-value=2.4 Score=36.58 Aligned_cols=102 Identities=19% Similarity=0.188 Sum_probs=70.7
Q ss_pred cCCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---------
Q 020307 160 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------- 227 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------- 227 (328)
.+++.+|--|.+.|- .+..|++.|. +|+.+|.+++.++.+.+.+ ..+...+.+|+.+..
T Consensus 27 L~gKvalVTGas~GIG~aiA~~la~~Ga--~V~i~~r~~~~l~~~~~~~-------g~~~~~~~~Dv~~~~~v~~~~~~~ 97 (273)
T 4fgs_A 27 LNAKIAVITGATSGIGLAAAKRFVAEGA--RVFITGRRKDVLDAAIAEI-------GGGAVGIQADSANLAELDRLYEKV 97 (273)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------CTTCEEEECCTTCHHHHHHHHHHH
T ss_pred hCCCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHc-------CCCeEEEEecCCCHHHHHHHHHHH
Confidence 357889999988763 5666777776 9999999999887766554 346678889986632
Q ss_pred -CCCCccceEEeccccccCCC-----h--------------HHHHHHHHhcccCCcEEEEEEe
Q 020307 228 -FASGFVDAVHAGAALHCWPS-----P--------------SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 228 -~~~~~fD~i~~~~vl~h~~d-----~--------------~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
-.-+..|+++.+..+..... + -...+.+.+.|+.+|.++....
T Consensus 98 ~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS 160 (273)
T 4fgs_A 98 KAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGS 160 (273)
T ss_dssp HHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECC
T ss_pred HHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEee
Confidence 01257899998766533321 1 1345777888888888776554
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=88.82 E-value=1.8 Score=37.66 Aligned_cols=104 Identities=17% Similarity=0.218 Sum_probs=67.5
Q ss_pred CCCeEEEEcCCc--CH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC-
Q 020307 161 QGGLLVDVSCGS--GL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~--G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~- 229 (328)
.++++|-.|++. |. ++..|++.|. +|+.+|.++...+...+.... ...+.++.+|+.+.. +.
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~ 101 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAES-----LGVKLTVPCDVSDAESVDNMFKV 101 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHH-----HTCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHh-----cCCeEEEEcCCCCHHHHHHHHHH
Confidence 467899999754 32 5666777776 899999997655555544443 234678899987642 10
Q ss_pred ----CCccceEEeccccccC---------CCh--------------HHHHHHHHhcccCCcEEEEEEec
Q 020307 230 ----SGFVDAVHAGAALHCW---------PSP--------------SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 230 ----~~~fD~i~~~~vl~h~---------~d~--------------~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
-+.+|+++.+..+... .+. ..+++.+.+.++.+|.++.....
T Consensus 102 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~ 170 (296)
T 3k31_A 102 LAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYY 170 (296)
T ss_dssp HHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred HHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEeh
Confidence 1468999987665321 111 13456677778888888776643
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=88.78 E-value=2.2 Score=36.11 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC---
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 229 (328)
.++++|-.|++.|- ++..|++.|. +|+.+|.+.+..+...+.+... ..++.++.+|+.+.. +.
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~ 84 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQA----GGKAIGLECNVTDEQHREAVIKAAL 84 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHHH
Confidence 46788888877652 5566667776 8999999998888777766553 457889999987642 00
Q ss_pred --CCccceEEecccccc
Q 020307 230 --SGFVDAVHAGAALHC 244 (328)
Q Consensus 230 --~~~fD~i~~~~vl~h 244 (328)
-+..|+++.+..+..
T Consensus 85 ~~~g~id~lv~nAg~~~ 101 (256)
T 3gaf_A 85 DQFGKITVLVNNAGGGG 101 (256)
T ss_dssp HHHSCCCEEEECCCCCC
T ss_pred HHcCCCCEEEECCCCCC
Confidence 146899998766543
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=88.60 E-value=2.8 Score=36.35 Aligned_cols=105 Identities=17% Similarity=0.176 Sum_probs=66.9
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCC--HHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC-
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFS--ENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s--~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~- 229 (328)
.++++|-.|++.|. ++..|++.|. +|+.+|.+ ....+...+.+... ..++.++.+|+.+.. +.
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~ 121 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEEC----GRKAVLLPGDLSDESFARSLVHK 121 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHT----TCCEEECCCCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHc----CCcEEEEEecCCCHHHHHHHHHH
Confidence 46789999976652 4556666676 89998886 33444444444433 457888889986632 00
Q ss_pred ----CCccceEEeccccccC-C-----Ch--------------HHHHHHHHhcccCCcEEEEEEec
Q 020307 230 ----SGFVDAVHAGAALHCW-P-----SP--------------SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 230 ----~~~fD~i~~~~vl~h~-~-----d~--------------~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
-+.+|+++.+..+... . ++ ..+++.+.+.++++|.++.....
T Consensus 122 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~ 187 (294)
T 3r3s_A 122 AREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSI 187 (294)
T ss_dssp HHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCG
T ss_pred HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCh
Confidence 1478999987665332 1 11 13566777788888887776543
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.58 E-value=3 Score=35.30 Aligned_cols=105 Identities=8% Similarity=0.095 Sum_probs=66.8
Q ss_pred ccCCCeEEEEcCC--cCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C
Q 020307 159 SAQGGLLVDVSCG--SGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F 228 (328)
Q Consensus 159 ~~~~~~vLDiGcG--~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~ 228 (328)
..++++||-.|++ .|. ++..|++.+. +|+.++.+....+.+++.... ..++.++.+|+.+.. +
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~ 83 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAE-----FGSELVFPCDVADDAQIDALF 83 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHH-----TTCCCEEECCTTCHHHHHHHH
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHH-----cCCcEEEECCCCCHHHHHHHH
Confidence 3467899999975 442 4566666666 999999886555555444333 345788899987642 0
Q ss_pred -----CCCccceEEeccccccC----------CCh--------------HHHHHHHHhcccCCcEEEEEEe
Q 020307 229 -----ASGFVDAVHAGAALHCW----------PSP--------------SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 229 -----~~~~fD~i~~~~vl~h~----------~d~--------------~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.-+.+|+++.+..+... .++ ..+++.+.+.++++|.++....
T Consensus 84 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 154 (271)
T 3ek2_A 84 ASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY 154 (271)
T ss_dssp HHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred HHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence 11478999987665331 111 1345667777777888777654
|
| >1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ... | Back alignment and structure |
|---|
Probab=88.45 E-value=0.21 Score=33.62 Aligned_cols=29 Identities=17% Similarity=0.512 Sum_probs=21.8
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
-.+.|+.|+..+..... ...+|+.||+.-
T Consensus 27 v~Y~C~~CG~~~e~~~~----------d~irCp~CG~RI 55 (70)
T 1twf_L 27 LKYICAECSSKLSLSRT----------DAVRCKDCGHRI 55 (70)
T ss_dssp CCEECSSSCCEECCCTT----------STTCCSSSCCCC
T ss_pred EEEECCCCCCcceeCCC----------CCccCCCCCceE
Confidence 45789999998655432 467999999854
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.44 E-value=3.5 Score=35.21 Aligned_cols=78 Identities=17% Similarity=0.295 Sum_probs=53.9
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeC-------------CHHHHHHHHHHHHhcCcCCCCCeEEEEecCC
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDF-------------SENMLRQCYDFIKQDNTILTSNLALVRADVC 224 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~-------------s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~ 224 (328)
.++++|-.|++.|- .+..|++.|. +|+.+|. +.+.++...+.+... ..++.++.+|+.
T Consensus 10 ~~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~ 83 (277)
T 3tsc_A 10 EGRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA----NRRIVAAVVDTR 83 (277)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT----TCCEEEEECCTT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhc----CCeEEEEECCCC
Confidence 56789999977653 5566667776 9999998 666666665555443 457888999987
Q ss_pred CCC-----CC-----CCccceEEecccccc
Q 020307 225 RLP-----FA-----SGFVDAVHAGAALHC 244 (328)
Q Consensus 225 ~lp-----~~-----~~~fD~i~~~~vl~h 244 (328)
+.. +. -+.+|+++.+..+..
T Consensus 84 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~ 113 (277)
T 3tsc_A 84 DFDRLRKVVDDGVAALGRLDIIVANAGVAA 113 (277)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 642 11 146899998776543
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.37 E-value=3.8 Score=34.99 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=67.2
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCC-HHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC--
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFS-ENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s-~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 229 (328)
.++++|-.|++.|- ++..|++.|. +|+.++.+ ....+...+.+... ..++.++.+|+.+.. +.
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~ 103 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQA----GGRAVAIRADNRDAEAIEQAIRET 103 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHH
Confidence 56789999977653 5566666666 88888654 45555555555443 457888999987642 00
Q ss_pred ---CCccceEEeccccccCCC-----h--------------HHHHHHHHhcccCCcEEEEEEe
Q 020307 230 ---SGFVDAVHAGAALHCWPS-----P--------------SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ---~~~fD~i~~~~vl~h~~d-----~--------------~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
-+..|+++.+..+..... + ..+++.+.+.++++|.++....
T Consensus 104 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS 166 (271)
T 3v2g_A 104 VEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS 166 (271)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 136899998766533221 1 1356777788888888877654
|
| >3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=88.02 E-value=0.15 Score=35.37 Aligned_cols=30 Identities=23% Similarity=0.738 Sum_probs=21.7
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
..+.||.|+..-.... ..++|.|..|+..+
T Consensus 34 ~ky~CpfCGk~~vkR~---------a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 34 QKHTCPVCGRKAVKRI---------STGIWQCQKCGATF 63 (83)
T ss_dssp SCBCCSSSCSSCEEEE---------ETTEEEETTTCCEE
T ss_pred cccCCCCCCCceeEec---------CcCeEEcCCCCCEE
Confidence 4578999998643322 23799999998765
|
| >2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.95 E-value=0.15 Score=39.24 Aligned_cols=28 Identities=29% Similarity=0.555 Sum_probs=24.7
Q ss_pred cccCceeeCCCCccccCccceeeeeccc
Q 020307 83 IYRSGFKCRKCDKTYSSKDNYLDLTVIS 110 (328)
Q Consensus 83 ~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 110 (328)
+..+.+.|+.|++.|++++|+++++...
T Consensus 105 v~eg~L~C~~cg~~YPI~dGIP~mL~~e 132 (141)
T 2j6a_A 105 IAEGEMKCRNCGHIYYIKNGIPNLLLPP 132 (141)
T ss_dssp EEEEEEECTTTCCEEEEETTEESSCCCS
T ss_pred ccCCEEECCCCCCcccccCCccCcCCcH
Confidence 4567899999999999999999998763
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.81 E-value=4.6 Score=33.69 Aligned_cols=75 Identities=16% Similarity=0.236 Sum_probs=51.1
Q ss_pred cCCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C-CC
Q 020307 160 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F-AS 230 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~-~~ 230 (328)
.++++||-.|++.|- ++..|++.|. +|+.++.+++.++...+.+ ..++.+..+|+.+.. + ..
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~ 82 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNAL-------KDNYTIEVCNLANKEECSNLISKT 82 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------CSSEEEEECCTTSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHh-------ccCccEEEcCCCCHHHHHHHHHhc
Confidence 467889988876542 4555666665 9999999988777665543 347888888986532 1 12
Q ss_pred CccceEEeccccc
Q 020307 231 GFVDAVHAGAALH 243 (328)
Q Consensus 231 ~~fD~i~~~~vl~ 243 (328)
+.+|+++.+..+.
T Consensus 83 ~~id~li~~Ag~~ 95 (249)
T 3f9i_A 83 SNLDILVCNAGIT 95 (249)
T ss_dssp SCCSEEEECCC--
T ss_pred CCCCEEEECCCCC
Confidence 4689999876643
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=87.81 E-value=2.4 Score=39.81 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=44.9
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 226 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 226 (328)
..+++|+=||.|.+...+.+.|. ..|.++|+++...+.-+.++.. .+...++.+|+.++
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~-~~v~avE~d~~A~~ty~~N~~~-----~p~~~~~~~DI~~i 146 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGG-QCVFTSEWNKHAVRTYKANHYC-----DPATHHFNEDIRDI 146 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTE-EEEEEECCCHHHHHHHHHHSCC-----CTTTCEEESCTHHH
T ss_pred cceEEEecCCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHhccc-----CCCcceeccchhhh
Confidence 45899999999999999998874 3589999999888777765421 23455677887654
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=87.79 E-value=1.2 Score=37.75 Aligned_cols=102 Identities=10% Similarity=0.050 Sum_probs=63.1
Q ss_pred CCCeEEEEcCCcCHHHHH----HHH-hCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-----C-
Q 020307 161 QGGLLVDVSCGSGLFSRK----FAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~----l~~-~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-----~- 229 (328)
++++||-.|+ +|.++.. |++ .+. +|+.++.+....+...+.+... ..++.++.+|+.+... .
T Consensus 3 ~~k~vlITGa-sggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~~~~~~~~ 75 (276)
T 1wma_A 3 GIHVALVTGG-NKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAE----GLSPRFHQLDIDDLQSIRALRDF 75 (276)
T ss_dssp CCCEEEESSC-SSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHT----TCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhc----CCeeEEEECCCCCHHHHHHHHHH
Confidence 3567887774 4555444 444 454 8999999988777666665543 3468889999876420 0
Q ss_pred ----CCccceEEeccccccCC----C-h--------------HHHHHHHHhcccCCcEEEEEE
Q 020307 230 ----SGFVDAVHAGAALHCWP----S-P--------------SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 230 ----~~~fD~i~~~~vl~h~~----d-~--------------~~~l~~~~r~LkpgG~l~i~~ 269 (328)
-+.+|+|+.+..+.... . + ..+++.+.+.++++|+++...
T Consensus 76 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s 138 (276)
T 1wma_A 76 LRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 138 (276)
T ss_dssp HHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence 13689998765543211 1 1 124566666777777776655
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=87.79 E-value=5.1 Score=34.67 Aligned_cols=78 Identities=21% Similarity=0.283 Sum_probs=53.6
Q ss_pred cCCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCC------------HHHHHHHHHHHHhcCcCCCCCeEEEEecCC
Q 020307 160 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFS------------ENMLRQCYDFIKQDNTILTSNLALVRADVC 224 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s------------~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~ 224 (328)
..++++|-.|++.|. ++..|++.|. +|+.+|.+ ++.++...+.+... ..++.++.+|+.
T Consensus 26 l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~ 99 (299)
T 3t7c_A 26 VEGKVAFITGAARGQGRSHAITLAREGA--DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL----GRRIIASQVDVR 99 (299)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT----TCCEEEEECCTT
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecccccccccccccCHHHHHHHHHHHHhc----CCceEEEECCCC
Confidence 357789999987653 5566667776 99999987 66666655555543 457889999987
Q ss_pred CCC-----C-----CCCccceEEeccccc
Q 020307 225 RLP-----F-----ASGFVDAVHAGAALH 243 (328)
Q Consensus 225 ~lp-----~-----~~~~fD~i~~~~vl~ 243 (328)
+.. + .-+..|+++.+..+.
T Consensus 100 ~~~~v~~~~~~~~~~~g~iD~lv~nAg~~ 128 (299)
T 3t7c_A 100 DFDAMQAAVDDGVTQLGRLDIVLANAALA 128 (299)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 642 1 014789999876643
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.60 E-value=3.8 Score=34.72 Aligned_cols=106 Identities=15% Similarity=0.243 Sum_probs=63.5
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC---
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 229 (328)
.++++|-.|++.|- ++..|++.|. +|+.++.+++..+...+.+..... ..++.++.+|+.+.. +.
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (267)
T 2gdz_A 6 NGKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFE--PQKTLFIQCDVADQQQLRDTFRKVV 81 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSC--GGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhcC--CCceEEEecCCCCHHHHHHHHHHHH
Confidence 45688988866542 4555566665 899999998776655554432110 235788899987632 00
Q ss_pred --CCccceEEeccccccCCChHH-----------HHHHHHhcccC-----CcEEEEEEe
Q 020307 230 --SGFVDAVHAGAALHCWPSPSN-----------AVAEISRILRS-----GGVFVGTTF 270 (328)
Q Consensus 230 --~~~fD~i~~~~vl~h~~d~~~-----------~l~~~~r~Lkp-----gG~l~i~~~ 270 (328)
-+.+|+++.+..+....+... ..+.+.+.++. +|+++....
T Consensus 82 ~~~g~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS 140 (267)
T 2gdz_A 82 DHFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS 140 (267)
T ss_dssp HHHSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred HHcCCCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCC
Confidence 135799998776544344432 23445555543 577666543
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=87.58 E-value=1.3 Score=37.68 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=66.8
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEE-eCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC--
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVAL-DFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~-D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 229 (328)
.++++|-.|++.|- ++..|++.|. +|+.+ +.+.+..+...+.+... ..++.++.+|+.+.. +.
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~ 80 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKL----GRSALAIKADLTNAAEVEAAISAA 80 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTT----TSCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHH
Confidence 46789999977652 5566666666 88887 77777666666655543 457888999987642 00
Q ss_pred ---CCccceEEeccccccC----C--Ch--------------HHHHHHHHhcccCCcEEEEEEe
Q 020307 230 ---SGFVDAVHAGAALHCW----P--SP--------------SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ---~~~fD~i~~~~vl~h~----~--d~--------------~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
-+..|+++.+...... . ++ ..+.+.+.+.++++|.++....
T Consensus 81 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS 144 (259)
T 3edm_A 81 ADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSS 144 (259)
T ss_dssp HHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred HHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 1468999977643311 1 11 1345667777777887776553
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=87.49 E-value=2.2 Score=38.43 Aligned_cols=93 Identities=8% Similarity=0.000 Sum_probs=58.2
Q ss_pred cCCCeEEEEcCC--cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CCCCc
Q 020307 160 AQGGLLVDVSCG--SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FASGF 232 (328)
Q Consensus 160 ~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~~ 232 (328)
.++.+||-+|++ .|.++..+++.. +.+|+++. +++-++.+++. . -..++...-.++. ...+.
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~-Ga~Vi~~~-~~~~~~~~~~l--------G-a~~vi~~~~~~~~~~v~~~t~g~ 231 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLS-GYIPIATC-SPHNFDLAKSR--------G-AEEVFDYRAPNLAQTIRTYTKNN 231 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHHT--------T-CSEEEETTSTTHHHHHHHHTTTC
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe-CHHHHHHHHHc--------C-CcEEEECCCchHHHHHHHHccCC
Confidence 578899999983 588888888874 44888885 78777776652 1 1122221111110 11245
Q ss_pred cceEEeccccccCCChHHHHHHHHhcc-cCCcEEEEEE
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRIL-RSGGVFVGTT 269 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~L-kpgG~l~i~~ 269 (328)
+|+|+-.- ..+ ..+....+.| ++||+++...
T Consensus 232 ~d~v~d~~-----g~~-~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 232 LRYALDCI-----TNV-ESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp CCEEEESS-----CSH-HHHHHHHHHSCTTCEEEEESS
T ss_pred ccEEEECC-----Cch-HHHHHHHHHhhcCCCEEEEEe
Confidence 88887432 233 4477788888 6999988754
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=87.48 E-value=3 Score=35.50 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-----C---
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A--- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-----~--- 229 (328)
.++++|-.|++.|- ++..|++.+. +|+.++.+++.++.+.+.+.... ..++.++.+|+.+... .
T Consensus 19 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~ 93 (266)
T 4egf_A 19 DGKRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQF---GTDVHTVAIDLAEPDAPAELARRAA 93 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH---CCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc---CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 46788888876652 4556666666 89999999988877766654421 4578999999976531 0
Q ss_pred --CCccceEEecccccc
Q 020307 230 --SGFVDAVHAGAALHC 244 (328)
Q Consensus 230 --~~~fD~i~~~~vl~h 244 (328)
-+..|+++.+..+.+
T Consensus 94 ~~~g~id~lv~nAg~~~ 110 (266)
T 4egf_A 94 EAFGGLDVLVNNAGISH 110 (266)
T ss_dssp HHHTSCSEEEEECCCCC
T ss_pred HHcCCCCEEEECCCcCC
Confidence 136899998766543
|
| >3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=87.46 E-value=0.22 Score=31.15 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=19.9
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
+...||.|++.+. .+.+.|..||+..
T Consensus 13 ~k~iCpkC~a~~~-------------~gaw~CrKCG~~~ 38 (51)
T 3j21_g 13 KKYVCLRCGATNP-------------WGAKKCRKCGYKR 38 (51)
T ss_dssp SEEECTTTCCEEC-------------TTCSSCSSSSSCC
T ss_pred CCccCCCCCCcCC-------------CCceecCCCCCcc
Confidence 4567999998732 1699999998764
|
| >3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=87.29 E-value=0.39 Score=31.46 Aligned_cols=32 Identities=19% Similarity=0.434 Sum_probs=24.1
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccccCc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 100 (328)
-.+.|..|+........ ..++|+.||+..+.+
T Consensus 20 v~Y~C~~Cg~~~~l~~~----------~~iRC~~CG~RILyK 51 (63)
T 3h0g_L 20 MIYLCADCGARNTIQAK----------EVIRCRECGHRVMYK 51 (63)
T ss_dssp CCCBCSSSCCBCCCCSS----------SCCCCSSSCCCCCBC
T ss_pred eEEECCCCCCeeecCCC----------CceECCCCCcEEEEE
Confidence 56899999987755322 589999999876443
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=87.24 E-value=3.9 Score=34.86 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=71.7
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 227 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------- 227 (328)
+++++|--|.+.|- .+..|++.|. +|+..|.+++.++...+.+... ..++..+.+|+.+..
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRK----GYDAHGVAFDVTDELAIEAAFSKLD 81 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHT----TCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 57788888877763 5666677776 9999999999888887777664 357888888986632
Q ss_pred CCCCccceEEeccccccCCCh-------------------HHHHHHHHhccc---CCcEEEEEEec
Q 020307 228 FASGFVDAVHAGAALHCWPSP-------------------SNAVAEISRILR---SGGVFVGTTFL 271 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h~~d~-------------------~~~l~~~~r~Lk---pgG~l~i~~~~ 271 (328)
-.-+..|+++.+..+.+.... -...+.+.+.++ .+|.++.....
T Consensus 82 ~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~ 147 (255)
T 4g81_D 82 AEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSL 147 (255)
T ss_dssp HTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred HHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeeh
Confidence 123578999988766443221 123466666662 46777765543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=87.22 E-value=2.6 Score=33.55 Aligned_cols=91 Identities=13% Similarity=0.166 Sum_probs=55.8
Q ss_pred CCeEEEEcCCc-CH-HHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----C-CCCcc
Q 020307 162 GGLLVDVSCGS-GL-FSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----F-ASGFV 233 (328)
Q Consensus 162 ~~~vLDiGcG~-G~-~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~-~~~~f 233 (328)
+.+|+-+|+|. |. ++..|.+. +. +|+++|.+++.++.+++ ..+..+.+|..+.. . .-..+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~--~V~vid~~~~~~~~~~~----------~g~~~~~gd~~~~~~l~~~~~~~~a 106 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGK--ISLGIEIREEAAQQHRS----------EGRNVISGDATDPDFWERILDTGHV 106 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCS--CEEEEESCHHHHHHHHH----------TTCCEEECCTTCHHHHHTBCSCCCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCC--eEEEEECCHHHHHHHHH----------CCCCEEEcCCCCHHHHHhccCCCCC
Confidence 56899999875 43 34555555 65 89999999988776653 13456677764421 1 12457
Q ss_pred ceEEeccccccCCChH--HHHHHHHhcccCCcEEEEEE
Q 020307 234 DAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~ 269 (328)
|+|+..- ++.. ..+-...+.+.|++.++...
T Consensus 107 d~vi~~~-----~~~~~~~~~~~~~~~~~~~~~ii~~~ 139 (183)
T 3c85_A 107 KLVLLAM-----PHHQGNQTALEQLQRRNYKGQIAAIA 139 (183)
T ss_dssp CEEEECC-----SSHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred CEEEEeC-----CChHHHHHHHHHHHHHCCCCEEEEEE
Confidence 8888632 3332 22334455566777777755
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=87.17 E-value=6.3 Score=33.34 Aligned_cols=79 Identities=16% Similarity=0.106 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C----
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 228 (328)
.++++|-.|++.|. ++..|++.|. +|+.+|.+++.++...+.+..... ..++.++.+|+.+.. +
T Consensus 7 ~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (265)
T 3lf2_A 7 SEAVAVVTGGSSGIGLATVELLLEAGA--AVAFCARDGERLRAAESALRQRFP--GARLFASVCDVLDALQVRAFAEACE 82 (265)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHST--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcC--CceEEEEeCCCCCHHHHHHHHHHHH
Confidence 46789999977652 5566666666 899999999888877776654210 345889999987642 0
Q ss_pred -CCCccceEEeccccc
Q 020307 229 -ASGFVDAVHAGAALH 243 (328)
Q Consensus 229 -~~~~fD~i~~~~vl~ 243 (328)
.-+..|+++.+..+.
T Consensus 83 ~~~g~id~lvnnAg~~ 98 (265)
T 3lf2_A 83 RTLGCASILVNNAGQG 98 (265)
T ss_dssp HHHCSCSEEEECCCCC
T ss_pred HHcCCCCEEEECCCCC
Confidence 014689999876653
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.13 E-value=3.6 Score=35.35 Aligned_cols=75 Identities=25% Similarity=0.326 Sum_probs=53.3
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C----
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 228 (328)
.++++|-.|++.|. ++..|++.|. +|+.+|.+++.++...+.+ ..++.++.+|+.+.. +
T Consensus 28 ~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~~~~~ 98 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKI-------GCGAAACRVDVSDEQQIIAMVDACV 98 (277)
T ss_dssp TTCEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHH-------CSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHc-------CCcceEEEecCCCHHHHHHHHHHHH
Confidence 46788988877663 5666777776 9999999988777665543 346788899987642 0
Q ss_pred -CCCccceEEecccccc
Q 020307 229 -ASGFVDAVHAGAALHC 244 (328)
Q Consensus 229 -~~~~fD~i~~~~vl~h 244 (328)
.-+.+|+++.+..+.+
T Consensus 99 ~~~g~iD~lvnnAg~~~ 115 (277)
T 3gvc_A 99 AAFGGVDKLVANAGVVH 115 (277)
T ss_dssp HHHSSCCEEEECCCCCC
T ss_pred HHcCCCCEEEECCCCCC
Confidence 0146899998776544
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=87.01 E-value=3.2 Score=35.58 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=53.8
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC---------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--------- 228 (328)
.++++|-.|++.|- ++..|++.|. +|+.+|.+++..+...+.+... ..++.++.+|+.+...
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~~~~~~~~~~ 105 (275)
T 4imr_A 32 RGRTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIAS----GGTAQELAGDLSEAGAGTDLIERAE 105 (275)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHT----TCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc----CCeEEEEEecCCCHHHHHHHHHHHH
Confidence 56788888876552 4556666666 9999999988777776666543 4578899999876431
Q ss_pred CCCccceEEecccc
Q 020307 229 ASGFVDAVHAGAAL 242 (328)
Q Consensus 229 ~~~~fD~i~~~~vl 242 (328)
..+.+|+++.+..+
T Consensus 106 ~~g~iD~lvnnAg~ 119 (275)
T 4imr_A 106 AIAPVDILVINASA 119 (275)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HhCCCCEEEECCCC
Confidence 01478999987665
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=86.85 E-value=4.8 Score=34.48 Aligned_cols=77 Identities=19% Similarity=0.337 Sum_probs=53.4
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCC----------------HHHHHHHHHHHHhcCcCCCCCeEEEEe
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFS----------------ENMLRQCYDFIKQDNTILTSNLALVRA 221 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s----------------~~~~~~a~~~~~~~~~~~~~~i~~~~~ 221 (328)
.++++|-.|++.|- ++..|++.|. +|+.+|.+ .+.++...+.+... ..++.++.+
T Consensus 10 ~~k~~lVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 83 (286)
T 3uve_A 10 EGKVAFVTGAARGQGRSHAVRLAQEGA--DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH----NRRIVTAEV 83 (286)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT----TCCEEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeccccccccccccccccCCHHHHHHHHHHHhhc----CCceEEEEc
Confidence 56789999987653 5666677776 99999987 66666655555443 457889999
Q ss_pred cCCCCC-----C-----CCCccceEEeccccc
Q 020307 222 DVCRLP-----F-----ASGFVDAVHAGAALH 243 (328)
Q Consensus 222 d~~~lp-----~-----~~~~fD~i~~~~vl~ 243 (328)
|+.+.. + .-+.+|+++.+..+.
T Consensus 84 Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 115 (286)
T 3uve_A 84 DVRDYDALKAAVDSGVEQLGRLDIIVANAGIG 115 (286)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEECCccc
Confidence 987642 0 014689999876653
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.80 E-value=9.5 Score=32.37 Aligned_cols=79 Identities=19% Similarity=0.206 Sum_probs=51.6
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC---
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 229 (328)
.++++|-.|++.|. ++..|++.+. +|++++.++..++...+.+...+. ..++.++.+|+.+.. +.
T Consensus 31 ~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~ 106 (279)
T 1xg5_A 31 RDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGY--PGTLIPYRCDLSNEEDILSMFSAIR 106 (279)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--SSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcCC--CceEEEEEecCCCHHHHHHHHHHHH
Confidence 46788988865432 4445555565 899999998877766665554331 245788889987642 00
Q ss_pred --CCccceEEeccccc
Q 020307 230 --SGFVDAVHAGAALH 243 (328)
Q Consensus 230 --~~~fD~i~~~~vl~ 243 (328)
-+.+|+|+.+..+.
T Consensus 107 ~~~g~iD~vi~~Ag~~ 122 (279)
T 1xg5_A 107 SQHSGVDICINNAGLA 122 (279)
T ss_dssp HHHCCCSEEEECCCCC
T ss_pred HhCCCCCEEEECCCCC
Confidence 13689999876543
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=86.77 E-value=1.7 Score=32.90 Aligned_cols=90 Identities=17% Similarity=0.135 Sum_probs=54.2
Q ss_pred CCeEEEEcCCc-CH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----CCCCccce
Q 020307 162 GGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA 235 (328)
Q Consensus 162 ~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~ 235 (328)
..+|+-+|+|. |. ++..|.+.+. +|+++|.+++.++.+++ ..+.++.+|..+.. ..-..+|+
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~--~V~~id~~~~~~~~~~~----------~~~~~~~gd~~~~~~l~~~~~~~~d~ 73 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGK--KVLAVDKSKEKIELLED----------EGFDAVIADPTDESFYRSLDLEGVSA 73 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHH----------TTCEEEECCTTCHHHHHHSCCTTCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHH----------CCCcEEECCCCCHHHHHhCCcccCCE
Confidence 45799999865 32 3344445555 99999999988777654 24677888886532 11246788
Q ss_pred EEeccccccCCChH--HHHHHHHhcccCCcEEEEEE
Q 020307 236 VHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~ 269 (328)
|+..-. +.. ..+....+.+. ...++...
T Consensus 74 vi~~~~-----~~~~n~~~~~~a~~~~-~~~iia~~ 103 (141)
T 3llv_A 74 VLITGS-----DDEFNLKILKALRSVS-DVYAIVRV 103 (141)
T ss_dssp EEECCS-----CHHHHHHHHHHHHHHC-CCCEEEEE
T ss_pred EEEecC-----CHHHHHHHHHHHHHhC-CceEEEEE
Confidence 876432 332 23334444455 55555544
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=86.63 E-value=3.5 Score=34.85 Aligned_cols=74 Identities=24% Similarity=0.292 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCcC---HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C----
Q 020307 161 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 228 (328)
.++++|-.|++.| .++..|++.|. +|+.+|.+.+.++...+.+ ..++.++.+|+.+.. +
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~~~ 77 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEI-------GPAAYAVQMDVTRQDSIDAAIAATV 77 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCCceEEEeeCCCHHHHHHHHHHHH
Confidence 4678998887654 24556666666 9999999988776665543 346788999987632 0
Q ss_pred -CCCccceEEeccccc
Q 020307 229 -ASGFVDAVHAGAALH 243 (328)
Q Consensus 229 -~~~~fD~i~~~~vl~ 243 (328)
.-+.+|+++.+..+.
T Consensus 78 ~~~g~id~lv~~Ag~~ 93 (259)
T 4e6p_A 78 EHAGGLDILVNNAALF 93 (259)
T ss_dssp HHSSSCCEEEECCCCC
T ss_pred HHcCCCCEEEECCCcC
Confidence 113689999876653
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.54 E-value=5.5 Score=34.12 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=52.5
Q ss_pred cCCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeC-CHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-----C-
Q 020307 160 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDF-SENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A- 229 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~-s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-----~- 229 (328)
..++++|-.|++.|- ++..|++.|. +|+.+|. +++.++...+.+... ..++.++.+|+.+... .
T Consensus 27 ~~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~ 100 (280)
T 4da9_A 27 KARPVAIVTGGRRGIGLGIARALAASGF--DIAITGIGDAEGVAPVIAELSGL----GARVIFLRADLADLSSHQATVDA 100 (280)
T ss_dssp CCCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCHHHHHHHHHHHHHT----TCCEEEEECCTTSGGGHHHHHHH
T ss_pred cCCCEEEEecCCCHHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHH
Confidence 356788988877652 5566666666 8999995 676666666555543 4578999999976431 0
Q ss_pred ----CCccceEEecccc
Q 020307 230 ----SGFVDAVHAGAAL 242 (328)
Q Consensus 230 ----~~~fD~i~~~~vl 242 (328)
-+..|+++.+..+
T Consensus 101 ~~~~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 101 VVAEFGRIDCLVNNAGI 117 (280)
T ss_dssp HHHHHSCCCEEEEECC-
T ss_pred HHHHcCCCCEEEECCCc
Confidence 1368999987765
|
| >2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1 | Back alignment and structure |
|---|
Probab=86.44 E-value=0.31 Score=34.63 Aligned_cols=26 Identities=27% Similarity=0.713 Sum_probs=19.5
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
..||.|++++...+ +.+.|..|+..|
T Consensus 33 ~~CP~Cq~eL~~~g-----------~~~hC~~C~~~f 58 (101)
T 2jne_A 33 LHCPQCQHVLDQDN-----------GHARCRSCGEFI 58 (101)
T ss_dssp CBCSSSCSBEEEET-----------TEEEETTTCCEE
T ss_pred ccCccCCCcceecC-----------CEEECccccchh
Confidence 78999999987744 466688776654
|
| >3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z | Back alignment and structure |
|---|
Probab=86.40 E-value=0.18 Score=37.20 Aligned_cols=30 Identities=23% Similarity=0.627 Sum_probs=21.3
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
..+.||.|+..-..... .++|.|..|+..+
T Consensus 59 akytCPfCGk~~vKR~a---------vGIW~C~~Cgk~f 88 (116)
T 3cc2_Z 59 EDHACPNCGEDRVDRQG---------TGIWQCSYCDYKF 88 (116)
T ss_dssp SCEECSSSCCEEEEEEE---------TTEEEETTTCCEE
T ss_pred cCCcCCCCCCceeEecC---------ceeEECCCCCCEE
Confidence 56789999984322221 2799999998765
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=86.21 E-value=5.7 Score=29.46 Aligned_cols=89 Identities=10% Similarity=0.191 Sum_probs=51.7
Q ss_pred CCeEEEEcCCc-CH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----CCCCccce
Q 020307 162 GGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA 235 (328)
Q Consensus 162 ~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~ 235 (328)
+.+|+=+|+|. |. ++..|.+.+. +|+++|.+++.++..++. .++.++.+|..+.. ..-..+|+
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~--~v~~~d~~~~~~~~~~~~---------~~~~~~~~d~~~~~~l~~~~~~~~d~ 72 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGH--DIVLIDIDKDICKKASAE---------IDALVINGDCTKIKTLEDAGIEDADM 72 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH---------CSSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHh---------cCcEEEEcCCCCHHHHHHcCcccCCE
Confidence 35789998864 32 3344445554 899999998877655432 24456677764321 11245888
Q ss_pred EEeccccccCCCh--HHHHHHHHhcccCCcEEEE
Q 020307 236 VHAGAALHCWPSP--SNAVAEISRILRSGGVFVG 267 (328)
Q Consensus 236 i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i 267 (328)
|+..- ++. ...+..+.+.+.++ .+++
T Consensus 73 vi~~~-----~~~~~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 73 YIAVT-----GKEEVNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp EEECC-----SCHHHHHHHHHHHHHTTCC-CEEE
T ss_pred EEEee-----CCchHHHHHHHHHHHcCCC-EEEE
Confidence 88653 233 23455566667775 4444
|
| >1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1 | Back alignment and structure |
|---|
Probab=86.17 E-value=0.27 Score=33.19 Aligned_cols=31 Identities=32% Similarity=0.695 Sum_probs=22.4
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCccccCcc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~ 101 (328)
.+.|| |+..+...... ....|+ ||......+
T Consensus 4 vv~C~-C~~~~~~~~~~---------kT~~C~-CG~~~~~~k 34 (71)
T 1gh9_A 4 IFRCD-CGRALYSREGA---------KTRKCV-CGRTVNVKD 34 (71)
T ss_dssp EEEET-TSCCEEEETTC---------SEEEET-TTEEEECCS
T ss_pred EEECC-CCCEEEEcCCC---------cEEECC-CCCeeeece
Confidence 46899 99877665543 688999 998774443
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=86.10 E-value=6.3 Score=33.06 Aligned_cols=77 Identities=21% Similarity=0.305 Sum_probs=53.2
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC--CCCC-----C--
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRLP-----F-- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~lp-----~-- 228 (328)
.++++|-.|++.|- ++..|++.|. +|+.+|.+++.++...+.+...+ ..++.++..|+ .+.. +
T Consensus 11 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~ 85 (252)
T 3f1l_A 11 NDRIILVTGASDGIGREAAMTYARYGA--TVILLGRNEEKLRQVASHINEET---GRQPQWFILDLLTCTSENCQQLAQR 85 (252)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH---SCCCEEEECCTTTCCHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc---CCCceEEEEecccCCHHHHHHHHHH
Confidence 56789988876652 4556666666 99999999988877766665432 34678888898 3321 0
Q ss_pred ---CCCccceEEecccc
Q 020307 229 ---ASGFVDAVHAGAAL 242 (328)
Q Consensus 229 ---~~~~fD~i~~~~vl 242 (328)
.-+.+|+++.+..+
T Consensus 86 ~~~~~g~id~lv~nAg~ 102 (252)
T 3f1l_A 86 IAVNYPRLDGVLHNAGL 102 (252)
T ss_dssp HHHHCSCCSEEEECCCC
T ss_pred HHHhCCCCCEEEECCcc
Confidence 12478999987665
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=85.96 E-value=4.8 Score=41.29 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=42.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 223 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~ 223 (328)
+..+++|+=||-|.++.-|...|....+.++|+++..++.-+.+ .++..++..|+
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N--------~p~~~~~~~DI 593 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLN--------NPGSTVFTEDC 593 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHH--------CTTSEEECSCH
T ss_pred CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHh--------CCCCccccccH
Confidence 34589999999999999999887423688999999988877765 44555665554
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=85.90 E-value=5.4 Score=33.82 Aligned_cols=80 Identities=15% Similarity=0.149 Sum_probs=53.7
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C-CCC
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F-ASG 231 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~-~~~ 231 (328)
.++++|-.|++.|- ++..|++.|. +|+.+|.+++.++...+.+...+. ...+.++.+|+.+.. + .-+
T Consensus 9 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~g 84 (267)
T 3t4x_A 9 KGKTALVTGSTAGIGKAIATSLVAEGA--NVLINGRREENVNETIKEIRAQYP--DAILQPVVADLGTEQGCQDVIEKYP 84 (267)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHCT--TCEEEEEECCTTSHHHHHHHHHHCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCC--CceEEEEecCCCCHHHHHHHHHhcC
Confidence 46788888876542 4555666666 999999999888777666654321 345778888886532 0 124
Q ss_pred ccceEEecccccc
Q 020307 232 FVDAVHAGAALHC 244 (328)
Q Consensus 232 ~fD~i~~~~vl~h 244 (328)
..|+++.+..+.+
T Consensus 85 ~id~lv~nAg~~~ 97 (267)
T 3t4x_A 85 KVDILINNLGIFE 97 (267)
T ss_dssp CCSEEEECCCCCC
T ss_pred CCCEEEECCCCCC
Confidence 6899998766543
|
| >1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1 | Back alignment and structure |
|---|
Probab=85.71 E-value=0.3 Score=30.51 Aligned_cols=38 Identities=18% Similarity=0.439 Sum_probs=21.9
Q ss_pred cCcccccCCCchhh---ccCCCCccccccccCceeeCCCCccc
Q 020307 58 GDLFSCPICYEPLI---RKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 58 ~~~l~CP~C~~~l~---~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
+....||.|+..-. ..... +-++-+.-.+.|.+|++.+
T Consensus 7 t~~~~Cp~Cg~~~a~f~q~Q~R--saDE~mT~Fy~C~~Cg~~w 47 (50)
T 1tfi_A 7 TDLFTCGKCKKKNCTYTQVQTR--SADEPMTTFVVCNECGNRW 47 (50)
T ss_dssp CCCSCCSSSCSSCEEEEEECSS--SSSSCCEEEEEESSSCCEE
T ss_pred eCccCCCCCCCCEEEEEEecCc--CCCCCceEEEEcCCCCCeE
Confidence 45678999998421 11111 1111233468899999875
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.45 E-value=6 Score=33.77 Aligned_cols=79 Identities=22% Similarity=0.236 Sum_probs=54.5
Q ss_pred cCCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeC-------------CHHHHHHHHHHHHhcCcCCCCCeEEEEecC
Q 020307 160 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDF-------------SENMLRQCYDFIKQDNTILTSNLALVRADV 223 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~-------------s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~ 223 (328)
..++++|-.|++.|- ++..|++.|. +|+.+|. +++.++...+.+... ..++.++.+|+
T Consensus 13 l~gk~~lVTGas~gIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv 86 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGRSHAVRLAAEGA--DIIACDICAPVSASVTYAPASPEDLDETARLVEDQ----GRKALTRVLDV 86 (280)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT----TCCEEEEECCT
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhc----CCeEEEEEcCC
Confidence 357789999977653 5566667776 9999997 677777666665543 45788899998
Q ss_pred CCCC-----CC-----CCccceEEecccccc
Q 020307 224 CRLP-----FA-----SGFVDAVHAGAALHC 244 (328)
Q Consensus 224 ~~lp-----~~-----~~~fD~i~~~~vl~h 244 (328)
.+.. +. -+..|+++.+..+.+
T Consensus 87 ~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~ 117 (280)
T 3pgx_A 87 RDDAALRELVADGMEQFGRLDVVVANAGVLS 117 (280)
T ss_dssp TCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 7642 00 147899998766543
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=85.44 E-value=0.24 Score=45.12 Aligned_cols=96 Identities=20% Similarity=0.169 Sum_probs=56.5
Q ss_pred CCCeEEEEcCCc-CHHHHHHHH-hCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec---------C------
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD---------V------ 223 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~-~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d---------~------ 223 (328)
++.+|+-+|+|. |.....++. .|. +|+++|.++..++.+.+. ...++..+ .
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~l----------Ga~~~~l~~~~~~~~gya~~~~~~ 250 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGA--KTTGYDVRPEVAEQVRSV----------GAQWLDLGIDAAGEGGYARELSEA 250 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTC--EEEEECSSGGGHHHHHHT----------TCEECCCC-------------CHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHc----------CCeEEeccccccccccchhhhhHH
Confidence 678999999986 555444444 454 999999999887777652 11222110 0
Q ss_pred ------CCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEE
Q 020307 224 ------CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT 268 (328)
Q Consensus 224 ------~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~ 268 (328)
..+.-.-...|+|+..-.+..-+.|.-+-+++.+.+|||++++=.
T Consensus 251 ~~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDv 301 (381)
T 3p2y_A 251 ERAQQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDL 301 (381)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEET
T ss_pred HHhhhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEE
Confidence 001001146899986532222122332347888899998877653
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.36 E-value=0.48 Score=43.49 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=57.4
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC-------------CCC
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-------------CRL 226 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-------------~~l 226 (328)
++.+|+-+|+|. |.....++... +.+|+++|.++..++.+++. ...++..+. ..+
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~~----------G~~~~~~~~~~~~d~~~~~~ya~e~ 257 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRL-GAVVSATDVRPAAKEQVASL----------GAKFIAVEDEEFKAAETAGGYAKEM 257 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSTTHHHHHHHT----------TCEECCCCC----------------
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHc----------CCceeecccccccccccccchhhhc
Confidence 678999999986 65555555442 34999999999887777652 112211110 001
Q ss_pred C----------CC--CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 227 P----------FA--SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 227 p----------~~--~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+ +. -...|+|+..-.+.--+.|.-+-+++.+.+|||.+++=+.
T Consensus 258 s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 258 SGEYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp -CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred chhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 0 00 1357999864322221233334578888999988776543
|
| >4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y | Back alignment and structure |
|---|
Probab=85.35 E-value=0.19 Score=36.14 Aligned_cols=30 Identities=23% Similarity=0.738 Sum_probs=21.5
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
..+.||.|+..-..... .++|.|..|+..+
T Consensus 35 aky~CpfCgk~~vKR~a---------~GIW~C~kCg~~~ 64 (103)
T 4a17_Y 35 AKYGCPFCGKVAVKRAA---------VGIWKCKPCKKII 64 (103)
T ss_dssp SCEECTTTCCEEEEEEE---------TTEEEETTTTEEE
T ss_pred cCCCCCCCCCceeeecC---------cceEEcCCCCCEE
Confidence 45789999986433222 2799999998765
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.31 E-value=4.1 Score=34.74 Aligned_cols=104 Identities=20% Similarity=0.232 Sum_probs=66.4
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEE-eCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC--
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVAL-DFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~-D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 229 (328)
.++++|-.|++.|- ++..|++.|. +|+.. +.+....+...+.+... ..++.++.+|+.+.. +.
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~v~~~~~~~ 99 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAA----GGKALTAQADVSDPAAVRRLFATA 99 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHHTC--EEEEEESSCSHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc----CCeEEEEEcCCCCHHHHHHHHHHH
Confidence 46789989877653 5666677776 88776 44555566555555443 457888999987642 00
Q ss_pred ---CCccceEEeccccccCCC-----h--------------HHHHHHHHhcccCCcEEEEEEe
Q 020307 230 ---SGFVDAVHAGAALHCWPS-----P--------------SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ---~~~fD~i~~~~vl~h~~d-----~--------------~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
-+.+|+++.+..+..... + ..+++.+.+.++++|.++....
T Consensus 100 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS 162 (267)
T 3u5t_A 100 EEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMST 162 (267)
T ss_dssp HHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence 147899998766543221 1 1245677777888888777653
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.29 E-value=4.3 Score=35.20 Aligned_cols=80 Identities=21% Similarity=0.255 Sum_probs=51.2
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC---
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 229 (328)
.++++|-.|++.|. ++..|++.|. +|+.++.+++.++...+.+...+. ...++.++.+|+.+.. +.
T Consensus 25 ~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~ 101 (297)
T 1xhl_A 25 SGKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGV-PAEKINAVVADVTEASGQDDIINTTL 101 (297)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC-CGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEEecCCCCHHHHHHHHHHHH
Confidence 46678888865542 4455556665 999999998877766665544210 0116888999987642 10
Q ss_pred --CCccceEEeccccc
Q 020307 230 --SGFVDAVHAGAALH 243 (328)
Q Consensus 230 --~~~fD~i~~~~vl~ 243 (328)
-+.+|+++.+..+.
T Consensus 102 ~~~g~iD~lvnnAG~~ 117 (297)
T 1xhl_A 102 AKFGKIDILVNNAGAN 117 (297)
T ss_dssp HHHSCCCEEEECCCCC
T ss_pred HhcCCCCEEEECCCcC
Confidence 13689999876543
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=85.23 E-value=6 Score=32.61 Aligned_cols=79 Identities=22% Similarity=0.202 Sum_probs=53.7
Q ss_pred CCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC----
Q 020307 162 GGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---- 229 (328)
Q Consensus 162 ~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---- 229 (328)
++++|-.|++.|. ++..|++.|. +|+.++.+.+.++...+.+.... ..++.++.+|+.+.. +.
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQEQ---GVEVFYHHLDVSKAESVEEFSKKVLE 76 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH---CCCEEEEECCTTCHHHHHHHCC-HHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc---CCeEEEEEeccCCHHHHHHHHHHHHH
Confidence 4578888866542 4555666665 89999999888777666554221 457889999987642 11
Q ss_pred -CCccceEEeccccccC
Q 020307 230 -SGFVDAVHAGAALHCW 245 (328)
Q Consensus 230 -~~~fD~i~~~~vl~h~ 245 (328)
-+.+|+++.+..+.+.
T Consensus 77 ~~g~id~li~~Ag~~~~ 93 (235)
T 3l77_A 77 RFGDVDVVVANAGLGYF 93 (235)
T ss_dssp HHSSCSEEEECCCCCCC
T ss_pred hcCCCCEEEECCccccc
Confidence 1368999988766443
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.01 E-value=1.9 Score=36.54 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCcCHHH----HHHHHhCCCceEEEEeC-CHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC-
Q 020307 161 QGGLLVDVSCGSGLFS----RKFAKSGTYSGVVALDF-SENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~----~~l~~~~~~~~v~g~D~-s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~- 229 (328)
++++||-.|++ |.++ ..|++.+. +|++++. ++...+...+.+... ..++.++.+|+.+.. +.
T Consensus 20 ~~k~vlItGas-ggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~ 92 (274)
T 1ja9_A 20 AGKVALTTGAG-RGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKL----GAQGVAIQADISKPSEVVALFDK 92 (274)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHH
Confidence 46688877754 5444 44555565 8999998 777666555555442 346888999987642 10
Q ss_pred ----CCccceEEeccccc
Q 020307 230 ----SGFVDAVHAGAALH 243 (328)
Q Consensus 230 ----~~~fD~i~~~~vl~ 243 (328)
-+.+|+++.+..+.
T Consensus 93 ~~~~~~~~d~vi~~Ag~~ 110 (274)
T 1ja9_A 93 AVSHFGGLDFVMSNSGME 110 (274)
T ss_dssp HHHHHSCEEEEECCCCCC
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 13689998776543
|
| >1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y* | Back alignment and structure |
|---|
Probab=84.85 E-value=0.24 Score=33.48 Aligned_cols=30 Identities=23% Similarity=0.704 Sum_probs=21.4
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
....||.|+..-..... .+++.|..|+..+
T Consensus 26 ~ky~C~fCgk~~vkR~a---------~GIW~C~~C~~~~ 55 (73)
T 1ffk_W 26 KKYKCPVCGFPKLKRAS---------TSIWVCGHCGYKI 55 (73)
T ss_pred cCccCCCCCCceeEEEE---------eEEEECCCCCcEE
Confidence 56789999974332221 2799999998765
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=84.66 E-value=3.7 Score=37.71 Aligned_cols=94 Identities=14% Similarity=0.167 Sum_probs=61.7
Q ss_pred CCeEEEEcCCc-CHH-HHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----CCCCccce
Q 020307 162 GGLLVDVSCGS-GLF-SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA 235 (328)
Q Consensus 162 ~~~vLDiGcG~-G~~-~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~ 235 (328)
..+|+-+|+|. |.. +..|.+.+. .|+++|.+++.++.+++ ..+.++.+|..+.. ..-...|+
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~--~vvvId~d~~~v~~~~~----------~g~~vi~GDat~~~~L~~agi~~A~~ 71 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGV--KMVVLDHDPDHIETLRK----------FGMKVFYGDATRMDLLESAGAAKAEV 71 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC--CEEEEECCHHHHHHHHH----------TTCCCEESCTTCHHHHHHTTTTTCSE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHh----------CCCeEEEcCCCCHHHHHhcCCCccCE
Confidence 45788998865 332 333444454 89999999999988774 24567889987642 12346788
Q ss_pred EEeccccccCCChH--HHHHHHHhcccCCcEEEEEEecc
Q 020307 236 VHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 236 i~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
|++.. +++. ..+....+.+.|+..++....+.
T Consensus 72 viv~~-----~~~~~n~~i~~~ar~~~p~~~Iiara~~~ 105 (413)
T 3l9w_A 72 LINAI-----DDPQTNLQLTEMVKEHFPHLQIIARARDV 105 (413)
T ss_dssp EEECC-----SSHHHHHHHHHHHHHHCTTCEEEEEESSH
T ss_pred EEECC-----CChHHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 77643 3443 34556667788888888766543
|
| >2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} | Back alignment and structure |
|---|
Probab=84.46 E-value=0.44 Score=32.87 Aligned_cols=13 Identities=38% Similarity=1.063 Sum_probs=8.8
Q ss_pred ccccCCCchhhcc
Q 020307 61 FSCPICYEPLIRK 73 (328)
Q Consensus 61 l~CP~C~~~l~~~ 73 (328)
..||.|++++...
T Consensus 3 ~~CP~C~~~l~~~ 15 (81)
T 2jrp_A 3 ITCPVCHHALERN 15 (81)
T ss_dssp CCCSSSCSCCEEC
T ss_pred CCCCCCCCccccC
Confidence 4578887777553
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=84.26 E-value=4.3 Score=34.58 Aligned_cols=104 Identities=19% Similarity=0.247 Sum_probs=66.1
Q ss_pred CCCeEEEEcCCcC---HHHHHHHHhCCCceEEEEeCC------------HHHHHHHHHHHHhcCcCCCCCeEEEEecCCC
Q 020307 161 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFS------------ENMLRQCYDFIKQDNTILTSNLALVRADVCR 225 (328)
Q Consensus 161 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s------------~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 225 (328)
.++++|-.|++.| .++..|++.|. +|+.+|.+ .+.++...+.+... ..++.++.+|+.+
T Consensus 12 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~ 85 (278)
T 3sx2_A 12 TGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDI----GSRIVARQADVRD 85 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH----TCCEEEEECCTTC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhc----CCeEEEEeCCCCC
Confidence 5678999997665 25566666776 89999987 66666555555443 4578999999876
Q ss_pred CC-----CC-----CCccceEEeccccccCCC-h--------------HHHHHHHHhccc---CCcEEEEEEe
Q 020307 226 LP-----FA-----SGFVDAVHAGAALHCWPS-P--------------SNAVAEISRILR---SGGVFVGTTF 270 (328)
Q Consensus 226 lp-----~~-----~~~fD~i~~~~vl~h~~d-~--------------~~~l~~~~r~Lk---pgG~l~i~~~ 270 (328)
.. +. -+..|+++.+..+..... + ..+++.+.+.++ .+|.++....
T Consensus 86 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS 158 (278)
T 3sx2_A 86 RESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISS 158 (278)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 42 11 147899998876654322 1 123455555553 2677776554
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.17 E-value=3.9 Score=37.01 Aligned_cols=102 Identities=9% Similarity=0.036 Sum_probs=65.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
.+.+||.++.+.|.++..++... ++.+.-|--..+..+.++...++. ...+.+.. ..+.+ .+.||+|+...
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~~----~~~~~ds~~~~~~~~~n~~~~~~~-~~~~~~~~-~~~~~---~~~~~~v~~~l 108 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEHK----PYSIGDSYISELATRENLRLNGID-ESSVKFLD-STADY---PQQPGVVLIKV 108 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGGC----CEEEESCHHHHHHHHHHHHHTTCC-GGGSEEEE-TTSCC---CSSCSEEEEEC
T ss_pred CCCCEEEECCCCCHHHHhhccCC----ceEEEhHHHHHHHHHHHHHHcCCC-ccceEecc-ccccc---ccCCCEEEEEc
Confidence 45689999999999998887653 344433665556667777765531 12355433 22332 35799988643
Q ss_pred ccccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 241 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
. .+.......|..+...|+||+.+++...+.
T Consensus 109 p-k~~~~l~~~L~~l~~~l~~~~~i~~~g~~~ 139 (375)
T 4dcm_A 109 P-KTLALLEQQLRALRKVVTSDTRIIAGAKAR 139 (375)
T ss_dssp C-SCHHHHHHHHHHHHTTCCTTSEEEEEEEGG
T ss_pred C-CCHHHHHHHHHHHHhhCCCCCEEEEEeccc
Confidence 2 222223456888999999999998877654
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=83.99 E-value=1.3 Score=41.79 Aligned_cols=89 Identities=12% Similarity=0.041 Sum_probs=54.3
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
.++++|+-+|+|. |......++.. +.+|+++|.++...+.+++. .... .++.+. + ...|+|+.
T Consensus 272 l~GktV~IiG~G~IG~~~A~~lka~-Ga~Viv~d~~~~~~~~A~~~----------Ga~~--~~l~e~-l--~~aDvVi~ 335 (494)
T 3ce6_A 272 IGGKKVLICGYGDVGKGCAEAMKGQ-GARVSVTEIDPINALQAMME----------GFDV--VTVEEA-I--GDADIVVT 335 (494)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT----------TCEE--CCHHHH-G--GGCSEEEE
T ss_pred CCcCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCEE--ecHHHH-H--hCCCEEEE
Confidence 4688999999976 55444444442 34999999999877666541 2222 222221 1 35798887
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.-.-.++ +-.+..+.+|+||+++...
T Consensus 336 atgt~~~-----i~~~~l~~mk~ggilvnvG 361 (494)
T 3ce6_A 336 ATGNKDI-----IMLEHIKAMKDHAILGNIG 361 (494)
T ss_dssp CSSSSCS-----BCHHHHHHSCTTCEEEECS
T ss_pred CCCCHHH-----HHHHHHHhcCCCcEEEEeC
Confidence 5322222 1135667789999887644
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=83.91 E-value=0.6 Score=42.57 Aligned_cols=43 Identities=21% Similarity=0.087 Sum_probs=31.2
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYD 203 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~ 203 (328)
.++.+|+-+|+|. |.....+++.. +.+|+++|.++...+.+++
T Consensus 170 l~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~~~d~~~~~~~~~~~ 213 (384)
T 1l7d_A 170 VPPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVES 213 (384)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 3688999999986 55555555543 3489999999877666654
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=83.88 E-value=0.5 Score=43.41 Aligned_cols=43 Identities=21% Similarity=0.110 Sum_probs=31.5
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYD 203 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~ 203 (328)
.++.+|+-+|+|. |.....+++.. +.+|+++|.++...+.+++
T Consensus 170 l~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~v~D~~~~~~~~~~~ 213 (401)
T 1x13_A 170 VPPAKVMVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS 213 (401)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCGGGHHHHHH
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH
Confidence 3678999999986 55555555543 3489999999987776643
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=83.20 E-value=5.1 Score=34.16 Aligned_cols=85 Identities=8% Similarity=0.107 Sum_probs=50.9
Q ss_pred eEEEEcCCc-CH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccc
Q 020307 164 LLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 241 (328)
Q Consensus 164 ~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~v 241 (328)
+|.=||+|. |. ++..|.+.+. +|+++|.+++.++.+.+ .+ . ... ...|..+. ...|+|+..--
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~----~g---~-~~~-~~~~~~~~----~~~D~vi~av~ 66 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVE----RQ---L-VDE-AGQDLSLL----QTAKIIFLCTP 66 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHH----TT---S-CSE-EESCGGGG----TTCSEEEECSC
T ss_pred EEEEEcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHh----CC---C-Ccc-ccCCHHHh----CCCCEEEEECC
Confidence 577899886 33 4555666665 89999999987766543 11 1 111 12233322 35798886432
Q ss_pred cccCCChHHHHHHHHhcccCCcEEE
Q 020307 242 LHCWPSPSNAVAEISRILRSGGVFV 266 (328)
Q Consensus 242 l~h~~d~~~~l~~~~r~LkpgG~l~ 266 (328)
-. ....+++++...++++..++
T Consensus 67 ~~---~~~~~~~~l~~~~~~~~~vv 88 (279)
T 2f1k_A 67 IQ---LILPTLEKLIPHLSPTAIVT 88 (279)
T ss_dssp HH---HHHHHHHHHGGGSCTTCEEE
T ss_pred HH---HHHHHHHHHHhhCCCCCEEE
Confidence 11 12456777878888877554
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.86 E-value=5.1 Score=33.66 Aligned_cols=75 Identities=19% Similarity=0.269 Sum_probs=49.9
Q ss_pred CCeEEEEcCCcC---HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC----
Q 020307 162 GGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---- 229 (328)
Q Consensus 162 ~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---- 229 (328)
++++|-.|++.| .++..|++.+. +|+.++.+++.++...+.+... ..++.++.+|+.+.. +.
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~ 75 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQA----GGHAVAVKVDVSDRDQVFAAVEQARK 75 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 357888886554 24455566665 8999999988776665555442 346888899987632 00
Q ss_pred -CCccceEEecccc
Q 020307 230 -SGFVDAVHAGAAL 242 (328)
Q Consensus 230 -~~~fD~i~~~~vl 242 (328)
-+.+|+++.+..+
T Consensus 76 ~~g~id~lv~nAg~ 89 (256)
T 1geg_A 76 TLGGFDVIVNNAGV 89 (256)
T ss_dssp HTTCCCEEEECCCC
T ss_pred HhCCCCEEEECCCC
Confidence 1368999987654
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=82.78 E-value=7.1 Score=33.34 Aligned_cols=104 Identities=20% Similarity=0.292 Sum_probs=62.6
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHH-HHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC--
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENM-LRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~-~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 229 (328)
+++++|-.|++.|. ++..|++.|. +|+.++.+... .+...+.+... ..++.++.+|+.+.. +.
T Consensus 28 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~ 101 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKN----GSDAACVKANVGVVEDIVRMFEEA 101 (283)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHH
Confidence 46788888866542 4455555665 89999887543 34333334332 346888889986532 00
Q ss_pred ---CCccceEEeccccccCC-----Ch--------------HHHHHHHHhcccCCcEEEEEEe
Q 020307 230 ---SGFVDAVHAGAALHCWP-----SP--------------SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 ---~~~fD~i~~~~vl~h~~-----d~--------------~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
-+.+|+++.+..+.... ++ ..+++.+.+.|+.+|+++....
T Consensus 102 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 164 (283)
T 1g0o_A 102 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS 164 (283)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 14689999876654332 11 1244666777777788777654
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=82.32 E-value=6.5 Score=32.38 Aligned_cols=76 Identities=21% Similarity=0.175 Sum_probs=48.1
Q ss_pred cCCCeEEEEcCCcCHHHH----HHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCe-EEEEecCC-CCCCCCCcc
Q 020307 160 AQGGLLVDVSCGSGLFSR----KFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVC-RLPFASGFV 233 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~----~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i-~~~~~d~~-~lp~~~~~f 233 (328)
..+++||-.|+ +|..+. .|++.+. +|++++.++...+.... .++ .++.+|+. .+.-.-+.+
T Consensus 19 l~~~~ilVtGa-tG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~----------~~~~~~~~~Dl~~~~~~~~~~~ 85 (236)
T 3e8x_A 19 FQGMRVLVVGA-NGKVARYLLSELKNKGH--EPVAMVRNEEQGPELRE----------RGASDIVVANLEEDFSHAFASI 85 (236)
T ss_dssp --CCEEEEETT-TSHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHH----------TTCSEEEECCTTSCCGGGGTTC
T ss_pred cCCCeEEEECC-CChHHHHHHHHHHhCCC--eEEEEECChHHHHHHHh----------CCCceEEEcccHHHHHHHHcCC
Confidence 35778998885 455444 4445565 99999998876654332 367 88999985 222112468
Q ss_pred ceEEeccccccCCCh
Q 020307 234 DAVHAGAALHCWPSP 248 (328)
Q Consensus 234 D~i~~~~vl~h~~d~ 248 (328)
|+|+.........++
T Consensus 86 D~vi~~ag~~~~~~~ 100 (236)
T 3e8x_A 86 DAVVFAAGSGPHTGA 100 (236)
T ss_dssp SEEEECCCCCTTSCH
T ss_pred CEEEECCCCCCCCCc
Confidence 999987765544444
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=82.26 E-value=11 Score=31.78 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEE-eCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC--
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVAL-DFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~-D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 229 (328)
+++++|-.|++.|. ++..|++.|. +|+.+ +.++...+...+.+... ..++.++.+|+.+.. +.
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~--~vv~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGY--NIVINYARSKKAALETAEEIEKL----GVKVLVVKANVGQPAKIKEMFQQI 76 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTT----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 35678888866542 4555666665 88876 88888777776666543 457889999987642 00
Q ss_pred ---CCccceEEeccccc
Q 020307 230 ---SGFVDAVHAGAALH 243 (328)
Q Consensus 230 ---~~~fD~i~~~~vl~ 243 (328)
-+.+|+++.+..+.
T Consensus 77 ~~~~g~id~lv~nAg~~ 93 (258)
T 3oid_A 77 DETFGRLDVFVNNAASG 93 (258)
T ss_dssp HHHHSCCCEEEECCCCC
T ss_pred HHHcCCCCEEEECCCCC
Confidence 14679999876543
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=82.06 E-value=6.1 Score=36.80 Aligned_cols=95 Identities=19% Similarity=0.219 Sum_probs=57.7
Q ss_pred CCeEEEEcCCc-CH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh-------cCc-C----CCCCeEEEEecCCCCC
Q 020307 162 GGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DNT-I----LTSNLALVRADVCRLP 227 (328)
Q Consensus 162 ~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-------~~~-~----~~~~i~~~~~d~~~lp 227 (328)
-.+|.-||+|. |. ++..++..|. +|+++|.+++.++.+++.+.. .+. . ......+ ..|.+.
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~-- 111 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKE-- 111 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGG--
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHH--
Confidence 45799999987 43 5566666665 899999999988887654321 000 0 0011222 334322
Q ss_pred CCCCccceEEeccccccCCCh---HHHHHHHHhcccCCcEEEE
Q 020307 228 FASGFVDAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVG 267 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h~~d~---~~~l~~~~r~LkpgG~l~i 267 (328)
-...|+|+..-. .+. ..+++++...++|+.+++.
T Consensus 112 --~~~aDlVIeaVp----e~~~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 112 --LSTVDLVVEAVF----EDMNLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp --GTTCSEEEECCC----SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred --HCCCCEEEEcCC----CCHHHHHHHHHHHHhhCCCCeEEEe
Confidence 134688775431 233 4678888889999877654
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=82.02 E-value=7.3 Score=34.66 Aligned_cols=95 Identities=11% Similarity=0.033 Sum_probs=52.0
Q ss_pred cccCCCeEEEEcC-C-cCHHHHHHHHhCCCceEEE-EeCCHH---HHHHHHHHHHhcCcCCCCCeEEEEe------cCCC
Q 020307 158 KSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVA-LDFSEN---MLRQCYDFIKQDNTILTSNLALVRA------DVCR 225 (328)
Q Consensus 158 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g-~D~s~~---~~~~a~~~~~~~~~~~~~~i~~~~~------d~~~ 225 (328)
...++.+||-+|+ | .|.++..+++.. +.++++ ++.++. ..+.+++ .| .. .++.. ++.+
T Consensus 164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~----lG----a~-~vi~~~~~~~~~~~~ 233 (357)
T 1zsy_A 164 QLQPGDSVIQNASNSGVGQAVIQIAAAL-GLRTINVVRDRPDIQKLSDRLKS----LG----AE-HVITEEELRRPEMKN 233 (357)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEECCCSCHHHHHHHHHH----TT----CS-EEEEHHHHHSGGGGG
T ss_pred ccCCCCEEEEeCCcCHHHHHHHHHHHHc-CCEEEEEecCccchHHHHHHHHh----cC----Cc-EEEecCcchHHHHHH
Confidence 3457899999997 3 477888888763 235554 444432 2344433 21 11 12221 1111
Q ss_pred CCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 226 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 226 lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+.-..+.+|+|+-. +..+. +.+..+.|+++|+++...
T Consensus 234 ~~~~~~~~Dvvid~-----~g~~~--~~~~~~~l~~~G~iv~~G 270 (357)
T 1zsy_A 234 FFKDMPQPRLALNC-----VGGKS--STELLRQLARGGTMVTYG 270 (357)
T ss_dssp TTSSSCCCSEEEES-----SCHHH--HHHHHTTSCTTCEEEECC
T ss_pred HHhCCCCceEEEEC-----CCcHH--HHHHHHhhCCCCEEEEEe
Confidence 11011148888743 22222 346789999999998763
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=81.91 E-value=7.6 Score=33.25 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=50.4
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCH-HHHHHHHHHHHhcCcCCCCCeEEEEecCCC----CC-----
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSE-NMLRQCYDFIKQDNTILTSNLALVRADVCR----LP----- 227 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~-~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp----- 227 (328)
.++++|-.|++.|. ++..|++.|. +|+.++.++ +.++...+.+.... ..++.++.+|+.+ ..
T Consensus 22 ~~k~~lVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~---~~~~~~~~~Dv~~~~~~~~~v~~~ 96 (288)
T 2x9g_A 22 EAPAAVVTGAAKRIGRAIAVKLHQTGY--RVVIHYHNSAEAAVSLADELNKER---SNTAVVCQADLTNSNVLPASCEEI 96 (288)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHHTC--EEEEEESSCHHHHHHHHHHHHHHS---TTCEEEEECCCSCSTTHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHHhhc---CCceEEEEeecCCccCCHHHHHHH
Confidence 46788888876542 4555666676 899999987 66655555543111 3478889999876 21
Q ss_pred C-----CCCccceEEecccc
Q 020307 228 F-----ASGFVDAVHAGAAL 242 (328)
Q Consensus 228 ~-----~~~~fD~i~~~~vl 242 (328)
+ .-+.+|+++.+..+
T Consensus 97 ~~~~~~~~g~iD~lvnnAG~ 116 (288)
T 2x9g_A 97 INSCFRAFGRCDVLVNNASA 116 (288)
T ss_dssp HHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHhcCCCCEEEECCCC
Confidence 0 01368999987664
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=81.90 E-value=5.3 Score=33.46 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=52.0
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC---
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 229 (328)
.++++|-.|++.|- ++..|++.|. +|+.+|.+++.++...+.+ ..++.++.+|+.+.. +.
T Consensus 5 ~gk~vlVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~~ 75 (247)
T 3rwb_A 5 AGKTALVTGAAQGIGKAIAARLAADGA--TVIVSDINAEGAKAAAASI-------GKKARAIAADISDPGSVKALFAEIQ 75 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHH-------CTTEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 46789999977652 5566666666 9999999988777665543 346788888986642 00
Q ss_pred --CCccceEEecccccc
Q 020307 230 --SGFVDAVHAGAALHC 244 (328)
Q Consensus 230 --~~~fD~i~~~~vl~h 244 (328)
-+.+|+++.+..+..
T Consensus 76 ~~~g~id~lv~nAg~~~ 92 (247)
T 3rwb_A 76 ALTGGIDILVNNASIVP 92 (247)
T ss_dssp HHHSCCSEEEECCCCCC
T ss_pred HHCCCCCEEEECCCCCC
Confidence 146899998766543
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=81.87 E-value=6.3 Score=33.51 Aligned_cols=76 Identities=24% Similarity=0.336 Sum_probs=57.8
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC---------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--------- 228 (328)
+++.+|--|.+.|- .+..|++.|. +|+.+|.+++.++...+.+... ..++.++.+|+.+..-
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~Ga--~Vv~~~~~~~~~~~~~~~i~~~----g~~~~~~~~Dvt~~~~v~~~~~~~~ 79 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALNDS--IVVAVELLEDRLNQIVQELRGM----GKEVLGVKADVSKKKDVEEFVRRTF 79 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 57889999988764 5666677776 9999999999998888887764 4578899999876420
Q ss_pred -CCCccceEEecccc
Q 020307 229 -ASGFVDAVHAGAAL 242 (328)
Q Consensus 229 -~~~~fD~i~~~~vl 242 (328)
.-+..|+++.+..+
T Consensus 80 ~~~G~iDiLVNNAGi 94 (254)
T 4fn4_A 80 ETYSRIDVLCNNAGI 94 (254)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHcCCCCEEEECCcc
Confidence 12578999987654
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=81.75 E-value=6.3 Score=33.00 Aligned_cols=77 Identities=22% Similarity=0.239 Sum_probs=48.6
Q ss_pred CCCeEEEEcCCcC---HHHHHHHHhCCCceEEEEeC-CHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC--
Q 020307 161 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDF-SENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~-s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 229 (328)
++++||-.|++.| .++..|++.+. +|+.++. ++...+...+.+... ..++.++.+|+.+.. +.
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~ 79 (261)
T 1gee_A 6 EGKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKV----GGEAIAVKGDVTVESDVINLVQSA 79 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhc----CCceEEEECCCCCHHHHHHHHHHH
Confidence 4668888875543 23444555565 8999998 776666555554432 346788889987632 10
Q ss_pred ---CCccceEEeccccc
Q 020307 230 ---SGFVDAVHAGAALH 243 (328)
Q Consensus 230 ---~~~fD~i~~~~vl~ 243 (328)
-+.+|+++.+..+.
T Consensus 80 ~~~~g~id~li~~Ag~~ 96 (261)
T 1gee_A 80 IKEFGKLDVMINNAGLE 96 (261)
T ss_dssp HHHHSCCCEEEECCCCC
T ss_pred HHHcCCCCEEEECCCCC
Confidence 13689999876543
|
| >3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A | Back alignment and structure |
|---|
Probab=81.68 E-value=1 Score=36.34 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=23.9
Q ss_pred ccCcccccCCCchhhcc-CCCCccccccccCceeeCCCCccc
Q 020307 57 EGDLFSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 57 ~~~~l~CP~C~~~l~~~-~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
.+..+.||.|++.-... ....-+-+.-+...+.|.+||+.+
T Consensus 134 ~t~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w 175 (178)
T 3po3_S 134 VTDRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRW 175 (178)
T ss_dssp CBSSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEE
T ss_pred CcCCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCee
Confidence 35678999999842110 000111122244688999999876
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=81.55 E-value=6.4 Score=33.76 Aligned_cols=89 Identities=9% Similarity=0.120 Sum_probs=51.3
Q ss_pred CeEEEEcCCc-C-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 163 GLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 163 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
.+|.=||+|. | .++..+.+.++..+|+++|.+++.++.+.+ .+ .......|..+. -...|+|+..-
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g-----~~~~~~~~~~~~---~~~aDvVilav 74 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RG-----IVDEATADFKVF---AALADVIILAV 74 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TT-----SCSEEESCTTTT---GGGCSEEEECS
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cC-----CcccccCCHHHh---hcCCCEEEEcC
Confidence 4789999886 3 355666666544589999999887766544 11 110122233221 13568887643
Q ss_pred ccccCCChHHHHHHHHhc-ccCCcEEE
Q 020307 241 ALHCWPSPSNAVAEISRI-LRSGGVFV 266 (328)
Q Consensus 241 vl~h~~d~~~~l~~~~r~-LkpgG~l~ 266 (328)
--.. ...+++++... ++++.+++
T Consensus 75 p~~~---~~~v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 75 PIKK---TIDFIKILADLDLKEDVIIT 98 (290)
T ss_dssp CHHH---HHHHHHHHHTSCCCTTCEEE
T ss_pred CHHH---HHHHHHHHHhcCCCCCCEEE
Confidence 2111 13556667666 77765544
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=81.41 E-value=2 Score=38.19 Aligned_cols=88 Identities=7% Similarity=-0.040 Sum_probs=54.0
Q ss_pred CeEEEE-cCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC--------CCc
Q 020307 163 GLLVDV-SCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA--------SGF 232 (328)
Q Consensus 163 ~~vLDi-GcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~--------~~~ 232 (328)
.+||-. |+|. |..+..+++.. +.+|+++|.+++.++.+++. ... ..+ |.....+. ...
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~~--------Ga~-~~~--~~~~~~~~~~v~~~~~~~g 233 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEE-GFRPIVTVRRDEQIALLKDI--------GAA-HVL--NEKAPDFEATLREVMKAEQ 233 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESCGGGHHHHHHH--------TCS-EEE--ETTSTTHHHHHHHHHHHHC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc--------CCC-EEE--ECCcHHHHHHHHHHhcCCC
Confidence 566654 4442 66666666653 34999999999988888753 111 122 22211111 135
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+|+|+-.-. ...+..+.+.|+++|++++..
T Consensus 234 ~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 234 PRIFLDAVT-------GPLASAIFNAMPKRARWIIYG 263 (349)
T ss_dssp CCEEEESSC-------HHHHHHHHHHSCTTCEEEECC
T ss_pred CcEEEECCC-------ChhHHHHHhhhcCCCEEEEEe
Confidence 898885443 123577889999999998865
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.14 E-value=7.2 Score=33.03 Aligned_cols=101 Identities=25% Similarity=0.288 Sum_probs=62.1
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC---
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 229 (328)
.++++|-.|++.|- ++..|++.+. +|+.++.+++.++...+.+ ..++.++.+|+.+.. +.
T Consensus 5 ~~k~vlITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~~~ 75 (263)
T 2a4k_A 5 SGKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAAL-------EAEAIAVVADVSDPKAVEAVFAEAL 75 (263)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTC-------CSSEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------cCceEEEEcCCCCHHHHHHHHHHHH
Confidence 45688888876542 4555566665 9999999987665544321 246788889987642 11
Q ss_pred --CCccceEEeccccccCC-----ChH--------------HHHHHHHhcccCCcEEEEEEe
Q 020307 230 --SGFVDAVHAGAALHCWP-----SPS--------------NAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 --~~~fD~i~~~~vl~h~~-----d~~--------------~~l~~~~r~LkpgG~l~i~~~ 270 (328)
-+.+|+++.+..+.... +++ .+.+.+.+.++.+|.++....
T Consensus 76 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 137 (263)
T 2a4k_A 76 EEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGS 137 (263)
T ss_dssp HHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred HHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 13679999876654321 111 234555555644677776553
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=81.09 E-value=9.1 Score=32.48 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=52.0
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeC-CHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC--
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDF-SENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~-s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 229 (328)
.++++|-.|++.|- ++..|++.|. +|+.++. +....+...+.+... ..++.++.+|+.+.. +.
T Consensus 27 ~~k~vlVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~d~~~v~~~~~~~ 100 (269)
T 4dmm_A 27 TDRIALVTGASRGIGRAIALELAAAGA--KVAVNYASSAGAADEVVAAIAAA----GGEAFAVKADVSQESEVEALFAAV 100 (269)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHH
Confidence 46788888866542 4555666666 8988888 666666666555543 457888999987643 00
Q ss_pred ---CCccceEEecccccc
Q 020307 230 ---SGFVDAVHAGAALHC 244 (328)
Q Consensus 230 ---~~~fD~i~~~~vl~h 244 (328)
-+..|+++.+..+..
T Consensus 101 ~~~~g~id~lv~nAg~~~ 118 (269)
T 4dmm_A 101 IERWGRLDVLVNNAGITR 118 (269)
T ss_dssp HHHHSCCCEEEECCCCCC
T ss_pred HHHcCCCCEEEECCCCCC
Confidence 136899998766543
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.99 E-value=3.2 Score=35.36 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=49.2
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC---
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 229 (328)
.++++|-.|++.|- ++..|++.|. +|+.++.+++.++...+.+..... ...++.++.+|+.+.. +.
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (278)
T 1spx_A 5 AEKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGV-SEQNVNSVVADVTTDAGQDEILSTTL 81 (278)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC-CGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccc-CCCceeEEecccCCHHHHHHHHHHHH
Confidence 35678888866442 4455556665 899999998877766555421110 0236788899987632 11
Q ss_pred --CCccceEEecccc
Q 020307 230 --SGFVDAVHAGAAL 242 (328)
Q Consensus 230 --~~~fD~i~~~~vl 242 (328)
-+.+|+++.+..+
T Consensus 82 ~~~g~id~lv~~Ag~ 96 (278)
T 1spx_A 82 GKFGKLDILVNNAGA 96 (278)
T ss_dssp HHHSCCCEEEECCC-
T ss_pred HHcCCCCEEEECCCC
Confidence 1368999987654
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=80.97 E-value=5.7 Score=33.61 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=63.1
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCC---HHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFS---ENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA 229 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s---~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~ 229 (328)
.++++|-.|++.|- ++..|++.|. +|+.++.+ .+.++...+.+... ..++.++.+|+.+.. +.
T Consensus 10 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~ 83 (262)
T 3ksu_A 10 KNKVIVIAGGIKNLGALTAKTFALESV--NLVLHYHQAKDSDTANKLKDELEDQ----GAKVALYQSDLSNEEEVAKLFD 83 (262)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHTTSSC--EEEEEESCGGGHHHHHHHHHHHHTT----TCEEEEEECCCCSHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCccCHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHH
Confidence 56789988876552 3444445555 88888654 34455444444433 347888999987642 10
Q ss_pred -----CCccceEEeccccccCCC-----h--------------HHHHHHHHhcccCCcEEEEEEe
Q 020307 230 -----SGFVDAVHAGAALHCWPS-----P--------------SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 230 -----~~~fD~i~~~~vl~h~~d-----~--------------~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
-+..|+++.+..+..... + ..+++.+.+.|+++|.++....
T Consensus 84 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS 148 (262)
T 3ksu_A 84 FAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIAT 148 (262)
T ss_dssp HHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEec
Confidence 147899998766433221 1 1245666677777888776553
|
| >1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3 | Back alignment and structure |
|---|
Probab=80.76 E-value=8.6 Score=27.44 Aligned_cols=58 Identities=10% Similarity=0.182 Sum_probs=40.8
Q ss_pred CChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE--eCcEEEE
Q 020307 246 PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV--QQSFIMF 323 (328)
Q Consensus 246 ~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~--~~~~~~~ 323 (328)
|-|.-..++..+-|++|..|.+..-+. -+.+++.++++..|++++.... .+.|.++
T Consensus 37 P~Pvl~tkkaL~~l~~Ge~L~Vl~dd~----------------------~a~~dI~~~~~~~G~~v~~~e~~~~g~~~i~ 94 (98)
T 1jdq_A 37 PVPDVETKRALQNMKPGEILEVWIDYP----------------------MSKERIPETVKKLGHEVLEIEEVGPSEWKIY 94 (98)
T ss_dssp SHHHHHHHHHHHTCCTTCEEEEEESSC----------------------THHHHHHHHHHHSSCCEEEEEECSSSCEEEE
T ss_pred CHHHHHHHHHHHhCCCCCEEEEEECCc----------------------cHHHHHHHHHHHCCCEEEEEEEecCCEEEEE
Confidence 445555677777899999887766332 1356899999999999988664 3556555
Q ss_pred EE
Q 020307 324 AA 325 (328)
Q Consensus 324 ~a 325 (328)
+.
T Consensus 95 I~ 96 (98)
T 1jdq_A 95 IK 96 (98)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.43 E-value=23 Score=29.05 Aligned_cols=72 Identities=22% Similarity=0.171 Sum_probs=46.2
Q ss_pred CCCeEEEEcCCcCHH----HHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C-CC
Q 020307 161 QGGLLVDVSCGSGLF----SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F-AS 230 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~----~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~-~~ 230 (328)
+++++|-.|++ |.+ +..|++.+. +|++++.++..++...+. ..++.++.+|+.+.. + .-
T Consensus 6 ~~~~vlVTGas-ggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~ 74 (244)
T 1cyd_A 6 SGLRALVTGAG-KGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKE--------CPGIEPVCVDLGDWDATEKALGGI 74 (244)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--------STTCEEEECCTTCHHHHHHHHTTC
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHh--------ccCCCcEEecCCCHHHHHHHHHHc
Confidence 46788888865 444 444555565 899999988766544332 235667788886532 1 12
Q ss_pred CccceEEeccccc
Q 020307 231 GFVDAVHAGAALH 243 (328)
Q Consensus 231 ~~fD~i~~~~vl~ 243 (328)
+.+|+|+.+..+.
T Consensus 75 ~~id~vi~~Ag~~ 87 (244)
T 1cyd_A 75 GPVDLLVNNAALV 87 (244)
T ss_dssp CCCSEEEECCCCC
T ss_pred CCCCEEEECCccc
Confidence 4689999876543
|
| >2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.37 E-value=1.6 Score=33.34 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=31.2
Q ss_pred CCCCccceEEeccccc--cCCChHHHHHHHHhcccCCcEEEE
Q 020307 228 FASGFVDAVHAGAALH--CWPSPSNAVAEISRILRSGGVFVG 267 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~--h~~d~~~~l~~~~r~LkpgG~l~i 267 (328)
++..+||.|+...--. +..-|..++..+.+.|||||.|..
T Consensus 55 Lp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 55 LENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp CCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred CCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe
Confidence 4588999999654322 233468999999999999999987
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 328 | ||||
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 9e-15 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 6e-13 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 2e-11 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 3e-11 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 1e-10 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 3e-09 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 5e-09 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 1e-08 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 6e-08 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 6e-08 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 7e-08 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 1e-07 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 2e-07 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 3e-07 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 4e-07 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 5e-07 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 4e-06 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 1e-05 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 1e-05 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 2e-05 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 2e-05 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-04 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 3e-04 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 3e-04 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 4e-04 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 8e-04 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 0.003 |
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 71.1 bits (173), Expect = 9e-15
Identities = 40/216 (18%), Positives = 80/216 (37%), Gaps = 45/216 (20%)
Query: 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKP 120
FSCP+C++PL R+ + + C + + +K+ Y++L + +
Sbjct: 2 FSCPLCHQPLSREKNS-----------YICPQRHQFDMAKEGYVNLLPVQHKRSRDPGD- 49
Query: 121 ASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEE------EYFKSAQGGLLVDVSCGSGL 174
S E+ ++ R+ F +G P + + ++D+ CG G
Sbjct: 50 -SAEMMQA-----------RRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGY 97
Query: 175 FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 234
++ FA + LD S+ ++ Q + RLPF+ +D
Sbjct: 98 YTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVA--------SSHRLPFSDTSMD 149
Query: 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270
A+ A E++R+++ GG + T
Sbjct: 150 AIIRIYAPC-------KAEELARVVKPGGWVITATP 178
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.6 bits (159), Expect = 6e-13
Identities = 30/233 (12%), Positives = 66/233 (28%), Gaps = 53/233 (22%)
Query: 126 FRSPFVSFLYERGWRQNFNRSGFPGPDEEEYFKSAQ--GGLLVDVSCGSGLFSRKFAKSG 183
+ P G + + F + + G L+D+ G ++ A
Sbjct: 23 YAPPRGDLCNPNGVG-PWKLRCLA-----QTFATGEVSGRTLIDIGSGPTVYQLLSA-CS 75
Query: 184 TYSGVVALDFSENMLRQCYDFIKQDN---------------------------TILTSNL 216
+ + DF E ++ +++++ +
Sbjct: 76 HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVK 135
Query: 217 ALVRADVCR------LPFASGFVDAVHAGAALHC----WPSPSNAVAEISRILRSGGVFV 266
++ DV + A DA+ + L S A+ I+ +LR GG +
Sbjct: 136 RVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL 195
Query: 267 GTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS 319
L + + R+ ++EEE+ + G +
Sbjct: 196 LIGALEESWYLAGEARLTV-------VPVSEEEVREALVRSGYKVRDLRTYIM 241
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 60.8 bits (146), Expect = 2e-11
Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 7/161 (4%)
Query: 165 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 224
++DV+ G G + FA VVA D +E++L+ FI+ + + +
Sbjct: 19 VLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP 76
Query: 225 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST--SLTGR 282
V A H +P+P++ V+E R+L+ GG + +
Sbjct: 77 FTDERFHIVTCRIAA---HHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNY 133
Query: 283 VLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMF 323
V +ER ++ + + + G +F
Sbjct: 134 VEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIF 174
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 60.4 bits (145), Expect = 3e-11
Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 7/149 (4%)
Query: 165 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 224
++D+ G+G + F+ + +D ++ M+ F ++ +
Sbjct: 20 VLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRF---QQGTAE 74
Query: 225 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST--SLTGR 282
LPF D + A H + AV E++R+L+ G F+
Sbjct: 75 SLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNH 134
Query: 283 VLRERILQNYNYLTEEEIEDLCTSCGLTN 311
+ R R + + E + + ++ L
Sbjct: 135 LNRLRDPSHVRESSLSEWQAMFSANQLAY 163
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 57.9 bits (139), Expect = 1e-10
Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 29/193 (15%)
Query: 143 FNRSGFPGPDEEE-------YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE 195
PGP E + + + VDV CG+G + + A V A+D +
Sbjct: 8 IKNPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRR--VYAIDRNP 65
Query: 196 NMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEI 255
+ +++ L N+ L+ D +D G + + I
Sbjct: 66 EAISTTEMNLQRHG--LGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEI---LRII 120
Query: 256 SRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315
L+ GG + T L T ++ L++ + ++ L T
Sbjct: 121 KDKLKPGGRIIVTAILLETKFEAM-------ECLRDLGFDVNITELNIARGRALDRGT-- 171
Query: 316 VQQSFIMFAAQKP 328
M ++ P
Sbjct: 172 ------MMVSRNP 178
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 54.9 bits (131), Expect = 3e-09
Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 6/133 (4%)
Query: 135 YERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDF 193
Y + R + + +K + +VD CG G +D
Sbjct: 1 YLKNTRDLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDS 60
Query: 194 SENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVA 253
E +L + + + + D A L +P +
Sbjct: 61 GETLLAEARELFRLLPYDSEFLE-----GDATEIELNDKYDIAICHAFLLHMTTPETMLQ 115
Query: 254 EISRILRSGGVFV 266
++ ++ GG +
Sbjct: 116 KMIHSVKKGGKII 128
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.5 bits (130), Expect = 5e-09
Identities = 20/164 (12%), Positives = 48/164 (29%), Gaps = 15/164 (9%)
Query: 165 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT------SNLAL 218
VD+ G G + A + ++ ++ + ++ + + L
Sbjct: 155 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 214
Query: 219 VRADVCRLPFASGFVDA-VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST 277
R D + + V P + + E ++ GG V +
Sbjct: 215 ERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAP---- 270
Query: 278 SLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFI 321
+ R L + + + +L G ++T K ++
Sbjct: 271 --LNFRINSRNLSDIGTIM--RVVELSPLKGSVSWTGKPVSYYL 310
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 52.4 bits (125), Expect = 1e-08
Identities = 17/149 (11%), Positives = 47/149 (31%), Gaps = 6/149 (4%)
Query: 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 214
+ + ++ + +G A V A++++ ++R+ D + I+
Sbjct: 68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIP- 126
Query: 215 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT 274
++ +A+ + + L+ GG + R
Sbjct: 127 ---ILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSI 183
Query: 275 SSTSLTGRVLRE--RILQNYNYLTEEEIE 301
T + +E IL+ + +E++
Sbjct: 184 DVTKDPKEIFKEQKEILEAGGFKIVDEVD 212
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 50.7 bits (120), Expect = 6e-08
Identities = 22/157 (14%), Positives = 47/157 (29%), Gaps = 7/157 (4%)
Query: 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 214
+ G ++D+ GSG +A+ + +D S Q ++
Sbjct: 27 RVLRMKPGTRILDLGSGSGEMLCTWARDHGIT-GTGIDMSSLFTAQAKRRAEELGVSERV 85
Query: 215 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV-GTTFLRY 273
+ A V A + A +++ L+ GG+ + G + R
Sbjct: 86 HFIHNDAAGYVANEKCDVAACVGA---TWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQ 142
Query: 274 TSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 310
+T + + ++LT + G
Sbjct: 143 LPATEEIAQAC--GVSSTSDFLTLPGLVGAFDDLGYD 177
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 6e-08
Identities = 14/163 (8%), Positives = 43/163 (26%), Gaps = 13/163 (7%)
Query: 167 DVSCGSGLFSRKFAK------SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
+ G+G + G ++ S + + + + + + + A +
Sbjct: 46 SIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHK 105
Query: 221 ADVCRL------PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT 274
D +H L+ + +L + + +
Sbjct: 106 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS 165
Query: 275 SSTSLTGRVLRERILQNYN-YLTEEEIEDLCTSCGLTNYTSKV 316
L + + Y+T +++ + + GL +
Sbjct: 166 GWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYDL 208
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 7e-08
Identities = 29/193 (15%), Positives = 50/193 (25%), Gaps = 45/193 (23%)
Query: 155 EYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC----------- 201
+ F QG L+D+ G ++ A ++ + DF++ +
Sbjct: 43 KTFGPGGLQGDTLIDIGSGPTIYQV-LAACDSFQDITLSDFTDRNREELEKWLKKEPGAY 101
Query: 202 --------------------YDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 241
K + V P D V A
Sbjct: 102 DWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLA 161
Query: 242 LHC----WPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTE 297
+ C + A+ ++ +L+ GG V T LR S L +
Sbjct: 162 MECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC-------VALEK 214
Query: 298 EEIEDLCTSCGLT 310
E+E G
Sbjct: 215 GEVEQAVLDAGFD 227
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 1e-07
Identities = 19/152 (12%), Positives = 43/152 (28%), Gaps = 12/152 (7%)
Query: 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 221
GG +++V G + + K ++ ++ ++ + ++ D+ + + L
Sbjct: 54 GGRVLEVGFGMAIAASKVQEAPIDE-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWED 112
Query: 222 DVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTS 278
LP D + R+L+ GGV +
Sbjct: 113 VAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGE--- 169
Query: 279 LTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 310
L + + + EE G
Sbjct: 170 -----LMKSKYSDITIMFEETQVPALLEAGFR 196
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.6 bits (117), Expect = 2e-07
Identities = 28/180 (15%), Positives = 57/180 (31%), Gaps = 33/180 (18%)
Query: 100 KDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEEYFKS 159
D Y D + Y + T +++ + L + G +
Sbjct: 18 PDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHR------------------ 59
Query: 160 AQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL 218
++DV+CG+G+ S + G + + V A D + +++ +
Sbjct: 60 -----VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEE 114
Query: 219 VRADV--CRLPFASGFVDAVHAGAALHCWPSPSN-------AVAEISRILRSGGVFVGTT 269
+P GF + G + P A+ I+ ++R GG+ V
Sbjct: 115 ANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 47.8 bits (113), Expect = 3e-07
Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 6/143 (4%)
Query: 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 221
++ + SG A + A+++S + + +++ N N+ +
Sbjct: 57 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN-----NIIPLLF 111
Query: 222 DVCRLPFASGFVDAVHAG-AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT 280
D + SG V+ V + A L+ G V R ST+
Sbjct: 112 DASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEP 171
Query: 281 GRVLRERILQNYNYLTEEEIEDL 303
V + + + + L
Sbjct: 172 EEVFKSVLKEMEGDFKIVKHGSL 194
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 48.0 bits (113), Expect = 4e-07
Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 8/115 (6%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
+G ++D+ CG G K+ ++G +D +E + + N +
Sbjct: 24 RGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARV--RARNMKRRFKVFFRA 80
Query: 221 ADVCRLPFASGFV-DAVHAGAALHCWPSPSNAV----AEISRILRSGGVFVGTTF 270
D G D + + + H S S ++ I+R LR GG F+ T
Sbjct: 81 QDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 47.6 bits (112), Expect = 5e-07
Identities = 20/168 (11%), Positives = 43/168 (25%), Gaps = 21/168 (12%)
Query: 154 EEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT 213
+ + G L+++ G F+ + + + + ++ SE + +K T
Sbjct: 13 RAFTPFFRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITY-- 68
Query: 214 SNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEI-SRILRSGGVFVGTTFLR 272
D + L P + I L GG
Sbjct: 69 ------IHSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA 122
Query: 273 YTSSTSLTGRVL----------RERILQNYNYLTEEEIEDLCTSCGLT 310
S + ++ E + + +E + GL
Sbjct: 123 NAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQ 170
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 44.6 bits (104), Expect = 4e-06
Identities = 22/180 (12%), Positives = 51/180 (28%), Gaps = 12/180 (6%)
Query: 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 214
K G +D+ CG+G S A +G + + +++
Sbjct: 24 AAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPA------SMANLERIKAAEGL 77
Query: 215 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 272
+ G D + + + + +A + R + GG + +
Sbjct: 78 DNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137
Query: 273 YTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT----SKVQQSFIMFAAQKP 328
G + + Y ++ G + T ++++ F A+K
Sbjct: 138 TPDFPCTVGFPFAFKEGELRRYYEGWDMLKYNEDVGELHRTDENGNRIKLRFATMLARKT 197
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (103), Expect = 1e-05
Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 12/145 (8%)
Query: 162 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
G +++ GSG S +K+ G V++ + ++ K +
Sbjct: 99 GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEW 158
Query: 221 ADVCRLPF--ASGFVDAVHAGAALHCW---PSPSNAVAEISRILRSGGVFVGTTFLRYTS 275
D SG + + + +P + L+ GGV Y
Sbjct: 159 PDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAV-----YVV 213
Query: 276 STSLTGRVLRERILQNYNYLTEEEI 300
+ + +L + I L+ E+I
Sbjct: 214 NITQVIELL-DGIRTCELALSCEKI 237
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.6 bits (102), Expect = 1e-05
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 7/104 (6%)
Query: 166 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 225
+DV G+G+ AK+G V+ ++ S L + +++ V
Sbjct: 38 LDVGSGTGILCMFAAKAGARK-VIGIECSSISDYAVKIVKANK---LDHVVTIIKGKVEE 93
Query: 226 LPFASGFVDAVHAGAALHCWPSPSN---AVAEISRILRSGGVFV 266
+ VD + + +C S + + L G+
Sbjct: 94 VELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 43.1 bits (101), Expect = 2e-05
Identities = 25/143 (17%), Positives = 53/143 (37%), Gaps = 16/143 (11%)
Query: 162 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
G +++V GSG S + G + ++ E+ L++ D + + N+ R
Sbjct: 86 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE--FYDIGNVRTSR 143
Query: 221 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT 280
+D+ + A + P P N V +I+ +++ G V Y + +
Sbjct: 144 SDIADFISDQMYD------AVIADIPDPWNHVQKIASMMKPGSVATF-----YLPNFDQS 192
Query: 281 GRVLRERILQNYNYLTEEEIEDL 303
+ + L E +E +
Sbjct: 193 EKTVLS--LSASGMHHLETVELM 213
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 2e-05
Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 7/116 (6%)
Query: 154 EEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT 213
+ + +++DV CG+G+ S AK+G V+ +D SE + + L
Sbjct: 28 YQNPHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQAMDIIRLNK---LE 83
Query: 214 SNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNA---VAEISRILRSGGVFV 266
+ L++ + + VD + + + S + ++ L GG
Sbjct: 84 DTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.1 bits (93), Expect = 2e-04
Identities = 11/114 (9%), Positives = 29/114 (25%), Gaps = 9/114 (7%)
Query: 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN--------TILT 213
G +D+ G G + A + + ++ ++ +
Sbjct: 217 GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNN 276
Query: 214 SNLALVRADVCRLPFASGFVDAVHAGAALHC-WPSPSNAVAEISRILRSGGVFV 266
+L ++ V A + V +I + + G +
Sbjct: 277 VEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKII 330
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 39.3 bits (90), Expect = 3e-04
Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 15/196 (7%)
Query: 124 ELFRSPFVSFLYERGWRQNFNRSGFPGPDEEEYFKSA---QGGLLVDVSCGSGLFSRKFA 180
EL+ ++ Y+ +R+ R EE FK + ++D++CG+G+ + + A
Sbjct: 3 ELYTL--LAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELA 60
Query: 181 KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240
+ G VV LD E MLR K+ N + V + F DAV
Sbjct: 61 ERGYE--VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF-----DAVTMFF 113
Query: 241 ALHCWPSPSN---AVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTE 297
+ + + ++++ L+ GGVF+ + ++ + +
Sbjct: 114 STIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDW 173
Query: 298 EEIEDLCTSCGLTNYT 313
E+E
Sbjct: 174 REVEPAVQKLRFKRLV 189
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 38.9 bits (89), Expect = 3e-04
Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 17/131 (12%)
Query: 151 PDEEEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 207
D ++Y+ S G ++ CG + G + VV + SE + + + +
Sbjct: 7 KDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYH--VVGAELSEAAVERYFTERGE 64
Query: 208 DNTILTSNLALV---------RADVCRLPFAS-GFVDAVHAGAALHCWPSPSNA--VAEI 255
I + V D L G A + AA+ P+ V +
Sbjct: 65 QPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHL 124
Query: 256 SRILRSGGVFV 266
++ +
Sbjct: 125 EALMPQACSGL 135
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.5 bits (91), Expect = 4e-04
Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 10/119 (8%)
Query: 167 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 226
DV CG+G+ S AK G V+ +D S + + + L+R + +
Sbjct: 44 DVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNG---FSDKITLLRGKLEDV 99
Query: 227 PFASGFVDAVHA---GAALHCWPSPSNAVAEISRILRSGGVFV---GTTFLRYTSSTSL 279
VD + + G L + L GG+ + L +
Sbjct: 100 HLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQY 158
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 38.1 bits (87), Expect = 8e-04
Identities = 19/152 (12%), Positives = 41/152 (26%), Gaps = 13/152 (8%)
Query: 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 220
+D++CG+G + ++ ++ ++ + L
Sbjct: 37 VFDDYLDLACGTGNLTENLCPKF------KNTWAVDLSQEMLSEAENKFRSQGLKPRLAC 90
Query: 221 ADVCRLPFASGFVDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRYTSST 277
D+ L F + + +S L+ GGVF+ Y S
Sbjct: 91 QDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQ 150
Query: 278 SLTGRVL----RERILQNYNYLTEEEIEDLCT 305
L E N ++ + +
Sbjct: 151 VLGNNDFNYDDDEVFYYWENQFEDDLVSMYIS 182
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 36.3 bits (82), Expect = 0.003
Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 27/220 (12%)
Query: 111 GLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEEYFKSAQGGLLVDVSC 170
G K+Y V P T++ + R + P +Y K G ++D++C
Sbjct: 1 GFKEYYRVFPTYTDINSQEY------RSRIETLE------PLLMKYMKK--RGKVLDLAC 46
Query: 171 GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 230
G G FS G ++ ++ SN+ + D +L F
Sbjct: 47 GVGGFSFLLEDYGFE------VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFED 100
Query: 231 GFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI 288
D V ++ + + E+ R+L+ G F+ + +T L R L+E +
Sbjct: 101 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI----MYFTDLRELLPR-LKESL 155
Query: 289 LQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQKP 328
+ Y + I D + + S+ + F
Sbjct: 156 VVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGK 195
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 328 | |||
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.95 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.95 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.94 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.93 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.92 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.91 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.9 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.89 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.89 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.88 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.86 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.86 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.86 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.85 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.85 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.84 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.83 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.83 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.83 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.83 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.81 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.81 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.81 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.8 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.8 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.8 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.77 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.76 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.76 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.75 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.75 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.75 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.74 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.73 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.71 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.7 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.7 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.69 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.68 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.67 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.65 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.64 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.61 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.6 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.58 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.57 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.57 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.55 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.51 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.5 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.47 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.46 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.44 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.41 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.37 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.32 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.31 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.29 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.25 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.18 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.11 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.11 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.1 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.1 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.05 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.05 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.04 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.03 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.98 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.94 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.89 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.81 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.79 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.75 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.75 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.74 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.73 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.72 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.71 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.69 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.69 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.65 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.63 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.6 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.52 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.52 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.48 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.47 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.46 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.41 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.4 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.4 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.34 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.2 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.15 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.1 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.07 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.02 | |
| d2jnya1 | 59 | Uncharacterized protein Cgl1405/cg1592 {Corynebact | 97.94 | |
| d2pk7a1 | 59 | Uncharacterized protein PFL1779 {Pseudomonas fluor | 97.92 | |
| d2hf1a1 | 59 | Hypothetical protein CV3345 {Chromobacterium viola | 97.84 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.76 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.66 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.65 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.58 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.48 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 97.37 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.33 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 97.26 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.23 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.22 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.12 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.08 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.0 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.97 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.85 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.75 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.75 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.63 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.51 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.38 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.34 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.28 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.21 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 95.86 | |
| d2akla2 | 38 | Hypothetical protein PA0128, N-terminal domain {Ps | 95.59 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.31 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.21 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 94.98 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.93 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 94.76 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.76 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 94.67 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.58 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.38 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 94.38 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 94.02 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 94.02 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 93.99 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 93.98 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.35 | |
| d1dl6a_ | 58 | Transcription initiation factor TFIIB, N-terminal | 93.01 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 91.73 | |
| d1tfia_ | 50 | Transcriptional factor SII, C-terminal domain {Hum | 91.64 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 91.62 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 91.62 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 91.59 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 91.5 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 91.3 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 90.73 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 90.62 | |
| d1qypa_ | 57 | RBP9 subunit of RNA polymerase II {Archaeon Thermo | 90.29 | |
| d1vqoz1 | 73 | Ribosomal protein L37ae {Archaeon Haloarcula maris | 89.76 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 89.74 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 89.67 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 89.38 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 89.35 | |
| d1jj2y_ | 73 | Ribosomal protein L37ae {Archaeon Haloarcula maris | 89.28 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 89.08 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 88.91 | |
| d2jnea1 | 71 | Hypothetical protein YfgJ {Escherichia coli [TaxId | 88.75 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 88.69 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 88.42 | |
| d1pfta_ | 50 | Transcription initiation factor TFIIB, N-terminal | 88.14 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 87.83 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 87.81 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 87.6 | |
| d1twfi2 | 72 | RBP9 subunit of RNA polymerase II {Baker's yeast ( | 86.98 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 86.97 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 86.89 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 86.38 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 86.34 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 86.23 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 86.2 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 85.88 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 85.86 | |
| d1vd4a_ | 62 | Transcription initiation factor TFIIE-alpha {Human | 85.64 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 85.63 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 84.67 | |
| d1rqga3 | 35 | Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyro | 84.42 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 84.4 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 84.39 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 84.33 | |
| d1pfva3 | 35 | Methionyl-tRNA synthetase (MetRS), Zn-domain {Esch | 84.12 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 83.83 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 83.34 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 83.06 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 82.46 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 82.31 | |
| d6rxna_ | 45 | Rubredoxin {Desulfovibrio desulfuricans, strain 27 | 82.15 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 81.87 | |
| d2ct7a1 | 73 | Ring finger protein 31 {Human (Homo sapiens) [TaxI | 81.37 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 81.15 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 81.08 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 80.87 | |
| d1neea2 | 37 | Zinc-binding domain of translation initiation fact | 80.48 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 80.39 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 80.18 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 80.1 |
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=4.1e-28 Score=213.20 Aligned_cols=174 Identities=22% Similarity=0.415 Sum_probs=132.8
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCccccCccceeeeecccCCCCccCCcchhhhccCCchHHHHHHhhHH
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWR 140 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (328)
|+||+|+++|.... +.+.|.+||+++..++||+++++......+..... .+++.+ +
T Consensus 2 f~CP~C~~~L~~~~-----------~~l~C~~~h~fd~~~~Gy~~ll~~~~~~~~~~~~~--~~~~~a-----------r 57 (268)
T d1p91a_ 2 FSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDS--AEMMQA-----------R 57 (268)
T ss_dssp BBCTTTCCBCEEET-----------TEEECTTCCEEEBCTTSCEECSCSSSSCSCCCSSS--HHHHHH-----------H
T ss_pred ccCCCCChhhhcCC-----------CeEECCCCCccccccCceEecccccccccCCCCCC--HHHHHH-----------H
Confidence 78999999986543 47999999998899999999987654443322111 111110 1
Q ss_pred hhhhcCCCCCcchh---hhc---cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCC
Q 020307 141 QNFNRSGFPGPDEE---EYF---KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 214 (328)
Q Consensus 141 ~~~~~~~~~~~~~~---~~l---~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~ 214 (328)
+.+...+++..... ..+ ...++.+|||||||+|.++..+++.+++.+++|+|+|+.+++.|+++ .+
T Consensus 58 ~~~l~~g~~~~l~~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~--------~~ 129 (268)
T d1p91a_ 58 RAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR--------YP 129 (268)
T ss_dssp HHHHTTTTTHHHHHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH--------CT
T ss_pred HHHHHcCchHHHHHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc--------cc
Confidence 22222222222222 111 23467899999999999999999998888999999999999999886 67
Q ss_pred CeEEEEecCCCCCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 215 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 215 ~i~~~~~d~~~lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
++.+.++|+.++|+++++||+|++.++++| ++++.|+|||||++++++|+..
T Consensus 130 ~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~~ 181 (268)
T d1p91a_ 130 QVTFCVASSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGPR 181 (268)
T ss_dssp TSEEEECCTTSCSBCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECTT
T ss_pred cccceeeehhhccCCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCCc
Confidence 899999999999999999999999998877 6889999999999999998754
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.95 E-value=5.9e-27 Score=201.01 Aligned_cols=155 Identities=20% Similarity=0.293 Sum_probs=130.1
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
.+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|++++...+ .+++.++++|++++|+++++||+
T Consensus 10 ~~~l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~~---~~~i~~~~~d~~~l~~~~~~fD~ 84 (231)
T d1vl5a_ 10 IAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNG---HQQVEYVQGDAEQMPFTDERFHI 84 (231)
T ss_dssp HHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCC-CCCSCTTCEEE
T ss_pred hcCCCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhcccccc---ccccccccccccccccccccccc
Confidence 35667889999999999999999999986 99999999999999999988766 67899999999999999999999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCC-CcchhhHHHHH-hhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTS-STSLTGRVLRE-RILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
|++.++++|++|+..+++++.++|||||++++.++..... ........+.. ....|...++.+++.++++++||++++
T Consensus 85 v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 164 (231)
T d1vl5a_ 85 VTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEE 164 (231)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEE
T ss_pred ccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999999988765421 11111222222 234677899999999999999999876
Q ss_pred EE
Q 020307 314 SK 315 (328)
Q Consensus 314 ~~ 315 (328)
..
T Consensus 165 ~~ 166 (231)
T d1vl5a_ 165 LH 166 (231)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.94 E-value=3.9e-26 Score=196.57 Aligned_cols=152 Identities=16% Similarity=0.240 Sum_probs=130.3
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
.+..+++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++...+ ..++.++++|++++|+++++||+
T Consensus 11 ~~~~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~~---~~~~~~~~~d~~~~~~~~~~fD~ 85 (234)
T d1xxla_ 11 TAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKG---VENVRFQQGTAESLPFPDDSFDI 85 (234)
T ss_dssp HHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHT---CCSEEEEECBTTBCCSCTTCEEE
T ss_pred HhCCCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhcccc---cccccccccccccccccccccce
Confidence 35677899999999999999999999876 99999999999999999988766 56899999999999999999999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHH---HH-HhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV---LR-ERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
|++.++++|++|+..+++++.++|||||++++.++.... .+..... +. ...+.|...++..++..+++.+||.+
T Consensus 86 v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~ 163 (234)
T d1xxla_ 86 ITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPE--DPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAY 163 (234)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCS--SHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEE
T ss_pred eeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCC--CHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCce
Confidence 999999999999999999999999999999998876542 2222221 11 23457788899999999999999987
Q ss_pred EEE
Q 020307 312 YTS 314 (328)
Q Consensus 312 v~~ 314 (328)
...
T Consensus 164 ~~~ 166 (234)
T d1xxla_ 164 QDI 166 (234)
T ss_dssp EEE
T ss_pred eEE
Confidence 653
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.93 E-value=1.2e-24 Score=192.44 Aligned_cols=154 Identities=15% Similarity=0.173 Sum_probs=129.1
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
...++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|+++....++ ..++.++++|+.++|+++++||+|+
T Consensus 64 ~l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl--~~~v~~~~~d~~~l~~~~~sfD~V~ 140 (282)
T d2o57a1 64 VLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGL--ADNITVKYGSFLEIPCEDNSYDFIW 140 (282)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTC--TTTEEEEECCTTSCSSCTTCEEEEE
T ss_pred CCCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccc--cccccccccccccccccccccchhh
Confidence 45678999999999999999999873 34999999999999999999988775 6789999999999999999999999
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
+..+++|++|+..+++++.++|||||++++.++.............+.... ......+.+++.++++++||+.++..
T Consensus 141 ~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~l~~~Gf~~i~~~ 217 (282)
T d2o57a1 141 SQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRI-KLHDMGSLGLYRSLAKECGLVTLRTF 217 (282)
T ss_dssp EESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHH-TCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHh-ccCCCCCHHHHHHHHHHcCCceEEEE
Confidence 999999999999999999999999999999988765433322223332222 23346689999999999999988754
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=2.3e-25 Score=188.09 Aligned_cols=140 Identities=19% Similarity=0.258 Sum_probs=114.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||||||+|.++..+. +++|+|+|+.+++.|+++ ++.++++|++++|+++++||+|++.
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~----------~~~~~~~d~~~l~~~~~~fD~I~~~ 98 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR----------GVFVLKGTAENLPLKDESFDFALMV 98 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT----------TCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred CCCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc----------ccccccccccccccccccccccccc
Confidence 456689999999999887763 578999999999999863 6889999999999999999999999
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHH-HHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVL-RERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
++|+|++||..+++++.++|||||++++.+++..+.......... ......+..+++.+++.++|+++||++++..
T Consensus 99 ~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~ 175 (208)
T d1vlma_ 99 TTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 175 (208)
T ss_dssp SCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred cccccccccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEE
Confidence 999999999999999999999999999999876532111111100 0123367778999999999999999988753
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.91 E-value=1.1e-23 Score=180.05 Aligned_cols=146 Identities=12% Similarity=0.119 Sum_probs=119.4
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++++|||||||+|.++..+++.+. +|+|+|+|+++++.|+++. ..++.++.+|++.+++ +++||+|++
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~-------~~~~~~~~~~~~~~~~-~~~fD~I~~ 87 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRL-------KDGITYIHSRFEDAQL-PRRYDNIVL 87 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHS-------CSCEEEEESCGGGCCC-SSCEEEEEE
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhccc-------cccccccccccccccc-ccccccccc
Confidence 34577999999999999999999876 8999999999999999874 4478999999988876 578999999
Q ss_pred ccccccCCChHHHHHHHH-hcccCCcEEEEEEeccCCCCcchh---------hH-HHHHhhhccCCCCCHHHHHHHHHHC
Q 020307 239 GAALHCWPSPSNAVAEIS-RILRSGGVFVGTTFLRYTSSTSLT---------GR-VLRERILQNYNYLTEEEIEDLCTSC 307 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~-r~LkpgG~l~i~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~l~~ll~~~ 307 (328)
.+||||++||..+|+++. ++|||||++++.+|+......... .. .-......|.+.|+.++++++++++
T Consensus 88 ~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~ 167 (225)
T d2p7ia1 88 THVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRA 167 (225)
T ss_dssp ESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHT
T ss_pred cceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHC
Confidence 999999999999999998 899999999999987642111000 00 0011223688899999999999999
Q ss_pred CCeEEEE
Q 020307 308 GLTNYTS 314 (328)
Q Consensus 308 Gf~~v~~ 314 (328)
||++++.
T Consensus 168 Gf~i~~~ 174 (225)
T d2p7ia1 168 GLQVTYR 174 (225)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
Confidence 9998774
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=2e-23 Score=180.69 Aligned_cols=153 Identities=13% Similarity=0.123 Sum_probs=126.2
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
.+...++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|+++....++ ..++.|+.+|+.++. .+++||+
T Consensus 28 ~~~l~pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~gl--~~~v~~~~~d~~~~~-~~~~fD~ 103 (245)
T d1nkva_ 28 VLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGV--SERVHFIHNDAAGYV-ANEKCDV 103 (245)
T ss_dssp HTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCCTTCC-CSSCEEE
T ss_pred HcCCCCCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhhc--cccchhhhhHHhhcc-ccCceeE
Confidence 3667789999999999999999998874 35999999999999999999888775 567999999999874 6789999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHh--hhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER--ILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
|++..+++|++|+..+++++.++|||||++++.++....... ....... ......+.+..++..+++++||+++.
T Consensus 104 v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~~v~ 180 (245)
T d1nkva_ 104 AACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPA---TEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVE 180 (245)
T ss_dssp EEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCS---SHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCE
T ss_pred EEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCC---hHHHHHHhccCCCcccCCHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999999999876542211 1111121 11334577899999999999998876
Q ss_pred EE
Q 020307 314 SK 315 (328)
Q Consensus 314 ~~ 315 (328)
..
T Consensus 181 ~~ 182 (245)
T d1nkva_ 181 MV 182 (245)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.4e-23 Score=177.50 Aligned_cols=150 Identities=12% Similarity=0.138 Sum_probs=122.9
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
...++.+|||||||+|.++..++..++ .+|+|+|+|+.|++.|++++...+ ..++.|+++|++++++++++||+|+
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~---~~~~~f~~~d~~~~~~~~~~fD~I~ 132 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEG---KRVRNYFCCGLQDFTPEPDSYDVIW 132 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGG---GGEEEEEECCGGGCCCCSSCEEEEE
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhcccccccccc---ccccccccccccccccccccccccc
Confidence 345678999999999999998876643 489999999999999999987765 4578999999999998899999999
Q ss_pred eccccccCCChH--HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 238 AGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 238 ~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
+.++++|++++. .+++++.++|||||.+++.++....... + ....+...++.++++++++++||++++..
T Consensus 133 ~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 133 IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI-L-------DDVDSSVCRDLDVVRRIICSAGLSLLAEE 204 (222)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE-E-------ETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred cccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccc-c-------ccCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence 999999999874 7999999999999999999876542211 0 01133445689999999999999999866
Q ss_pred EeCc
Q 020307 316 VQQS 319 (328)
Q Consensus 316 ~~~~ 319 (328)
....
T Consensus 205 ~q~~ 208 (222)
T d2ex4a1 205 RQEN 208 (222)
T ss_dssp ECCS
T ss_pred EeCC
Confidence 5443
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.89 E-value=3.2e-22 Score=170.74 Aligned_cols=164 Identities=15% Similarity=0.164 Sum_probs=127.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHh--CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
.++.+|||+|||+|..+..+++. .++.+|+|+|+|+.|++.|+++++..+. ..++.+..+|+.+++ ...+|+|+
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~--~~~~~~~~~d~~~~~--~~~~d~i~ 113 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS--EIPVEILCNDIRHVE--IKNASMVI 113 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC--SSCEEEECSCTTTCC--CCSEEEEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc--cchhhhccchhhccc--cccceeeE
Confidence 56789999999999999999986 3577999999999999999999877553 567778888887665 45789999
Q ss_pred eccccccCC--ChHHHHHHHHhcccCCcEEEEEEeccCCCCc--chhhHHHHHh-----------------hhccCCCCC
Q 020307 238 AGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSST--SLTGRVLRER-----------------ILQNYNYLT 296 (328)
Q Consensus 238 ~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--~~~~~~~~~~-----------------~~~~~~~~~ 296 (328)
+..+++|++ |+..+|++++++|||||.+++.++....... ......+... .......++
T Consensus 114 ~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 193 (225)
T d1im8a_ 114 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDS 193 (225)
T ss_dssp EESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCC
T ss_pred EeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCC
Confidence 999999995 7789999999999999999999876542211 1111111110 012245689
Q ss_pred HHHHHHHHHHCCCeEEEEE-EeCcEEEEEEeC
Q 020307 297 EEEIEDLCTSCGLTNYTSK-VQQSFIMFAAQK 327 (328)
Q Consensus 297 ~~~l~~ll~~~Gf~~v~~~-~~~~~~~~~a~k 327 (328)
.+++..+|+++||+.++.. ....|..++|+|
T Consensus 194 ~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 225 (225)
T d1im8a_ 194 IETHKVRLKNVGFSQVELWFQCFNFGSMIAVK 225 (225)
T ss_dssp HHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence 9999999999999988864 456688888887
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.88 E-value=1.4e-22 Score=176.11 Aligned_cols=151 Identities=9% Similarity=0.031 Sum_probs=121.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...+..+|||+|||+|.++..++..+. .+|+++|+|+.+++.|++++.. .+++.++++|++++++++++||+|
T Consensus 89 l~~~~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~I 162 (254)
T d1xtpa_ 89 LPGHGTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAG-----MPVGKFILASMETATLPPNTYDLI 162 (254)
T ss_dssp STTCCCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTT-----SSEEEEEESCGGGCCCCSSCEEEE
T ss_pred CCCCCCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhccccc-----cccceeEEccccccccCCCccceE
Confidence 4445678999999999999998876642 3899999999999999988764 457899999999999889999999
Q ss_pred EeccccccCCChH--HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 237 HAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 237 ~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
++.++++|++|+. .+|+++.++|||||++++.++........+ ....+..+++.++++++++++||++++.
T Consensus 163 ~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~-------d~~d~~~~rs~~~~~~l~~~aGf~ii~~ 235 (254)
T d1xtpa_ 163 VIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLV-------DKEDSSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEE-------ETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred EeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCccee-------cccCCceeCCHHHHHHHHHHcCCEEEEE
Confidence 9999999999875 789999999999999999887654221111 0112334568999999999999999987
Q ss_pred EEeCcE
Q 020307 315 KVQQSF 320 (328)
Q Consensus 315 ~~~~~~ 320 (328)
..+..|
T Consensus 236 ~~q~~f 241 (254)
T d1xtpa_ 236 AFQEEW 241 (254)
T ss_dssp EECTTC
T ss_pred EeeCCC
Confidence 665443
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.86 E-value=6.3e-21 Score=159.43 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=118.1
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++++|||||||+|..+..+++++. +|+|+|+|+.+++.++++....+ ..++.+...|+..+++ +++||+|++
T Consensus 28 ~~~~grvLDiGcG~G~~~~~la~~g~--~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~d~~~~~~-~~~fD~I~~ 101 (198)
T d2i6ga1 28 VVAPGRTLDLGCGNGRNSLYLAANGY--DVTAWDKNPASMANLERIKAAEG---LDNLQTDLVDLNTLTF-DGEYDFILS 101 (198)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CTTEEEEECCTTTCCC-CCCEEEEEE
T ss_pred cCCCCcEEEECCCCCHHHHHHHHHhh--hhccccCcHHHHHHHHHHhhhcc---ccchhhhheecccccc-cccccEEEE
Confidence 33456999999999999999999987 99999999999999999888766 5679999999988875 678999999
Q ss_pred ccccccCCChH--HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEE
Q 020307 239 GAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 239 ~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
..+++|++++. ++++++.++|+|||++++.++...... .........++..++++.+ .||+++....
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~---------~~~~~~~~~~~~~el~~~~--~~~~i~~~~e 170 (198)
T d2i6ga1 102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDF---------PCTVGFPFAFKEGELRRYY--EGWDMLKYNE 170 (198)
T ss_dssp ESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC------------------CCCCBCTTHHHHHT--TTSEEEEEEE
T ss_pred eeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccC---------CCCCCCCCccCHHHHHHHh--CCCeEEEeee
Confidence 99999998664 799999999999999999886543111 0111233556777888887 5787664221
Q ss_pred ---------------eCcEEEEEEeCC
Q 020307 317 ---------------QQSFIMFAAQKP 328 (328)
Q Consensus 317 ---------------~~~~~~~~a~k~ 328 (328)
...+..+++|||
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~varK~ 197 (198)
T d2i6ga1 171 DVGELHRTDENGNRIKLRFATMLARKT 197 (198)
T ss_dssp EECCC------------EEEEEEEECC
T ss_pred ccceeeecCCCCcEeeEEEEEEEEEeC
Confidence 222467888886
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.86 E-value=6.9e-21 Score=167.80 Aligned_cols=157 Identities=14% Similarity=0.168 Sum_probs=118.7
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
...++.+|||||||+|.++..+++..+ ..+|+|+|+|+.+++.|+++.... ..++.|.++|+.+++++ ++||+|
T Consensus 24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~----~~~~~f~~~d~~~~~~~-~~fD~v 98 (281)
T d2gh1a1 24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL----PYDSEFLEGDATEIELN-DKYDIA 98 (281)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS----SSEEEEEESCTTTCCCS-SCEEEE
T ss_pred ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc----ccccccccccccccccc-CCceEE
Confidence 345678999999999999999998754 468999999999999999998775 34789999999998875 579999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCC---------CCcch------hhHHHHHhhh-ccCCCCCHHHH
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT---------SSTSL------TGRVLRERIL-QNYNYLTEEEI 300 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~---------~~~~~------~~~~~~~~~~-~~~~~~~~~~l 300 (328)
++.++++|++||..+|+++.++|||||.+++.++.... ..... +.+.+..... ......-..++
T Consensus 99 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 178 (281)
T d2gh1a1 99 ICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKI 178 (281)
T ss_dssp EEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTTGGGTH
T ss_pred EEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999975320 00000 0111111111 11112223568
Q ss_pred HHHHHHCCCeEEEEEEeCc
Q 020307 301 EDLCTSCGLTNYTSKVQQS 319 (328)
Q Consensus 301 ~~ll~~~Gf~~v~~~~~~~ 319 (328)
..+++++||+.++......
T Consensus 179 ~~~l~eaGf~~i~~~~~~~ 197 (281)
T d2gh1a1 179 PIYLSELGVKNIECRVSDK 197 (281)
T ss_dssp HHHHHHTTCEEEEEEECCC
T ss_pred HHHHHHcCCeEEEEEEecc
Confidence 8999999999988655443
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.86 E-value=7e-21 Score=165.24 Aligned_cols=156 Identities=17% Similarity=0.230 Sum_probs=120.9
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
.+...+.++|||||||+|.++..+++++|..+++++|+ +.+++.+++++...++ ..++.++.+|+.+. . ..+||+
T Consensus 75 ~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~rv~~~~~D~~~~-~-~~~~D~ 149 (253)
T d1tw3a2 75 AYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL--SDRVDVVEGDFFEP-L-PRKADA 149 (253)
T ss_dssp HSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC--TTTEEEEECCTTSC-C-SSCEEE
T ss_pred hcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhc--ccchhhccccchhh-c-ccchhh
Confidence 34455678999999999999999999999899999998 6789999999988775 67899999998653 2 357999
Q ss_pred EEeccccccCCChH--HHHHHHHhcccCCcEEEEEEeccCCCC-cchhhHHH--HHhhhccCCCCCHHHHHHHHHHCCCe
Q 020307 236 VHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSS-TSLTGRVL--RERILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 236 i~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
|++.++|||++++. ++|++++++|||||++++.+....... .......+ .-.........|.++|+++++++||+
T Consensus 150 v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~ 229 (253)
T d1tw3a2 150 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLV 229 (253)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEE
T ss_pred eeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCe
Confidence 99999999998774 789999999999999999886543211 11111111 11111233457899999999999999
Q ss_pred EEEEEE
Q 020307 311 NYTSKV 316 (328)
Q Consensus 311 ~v~~~~ 316 (328)
++++..
T Consensus 230 ~~~v~~ 235 (253)
T d1tw3a2 230 VEEVRQ 235 (253)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 887543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.85 E-value=5.5e-21 Score=165.37 Aligned_cols=107 Identities=24% Similarity=0.416 Sum_probs=92.7
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
...+..+|||||||+|.++..|++.+. +|+|+|+|+.|++.|++++... ..++.++++|+++++++ ++||+|+
T Consensus 38 ~~~~~~~iLDiGcGtG~~~~~l~~~~~--~v~gvD~s~~mi~~a~~~~~~~----~~~i~~~~~d~~~l~~~-~~fD~I~ 110 (251)
T d1wzna1 38 AKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKER----NLKIEFLQGDVLEIAFK-NEFDAVT 110 (251)
T ss_dssp CSSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEESCGGGCCCC-SCEEEEE
T ss_pred cCCCCCEEEEeCCCCCccchhhcccce--EEEEEeeccccccccccccccc----cccchheehhhhhcccc-cccchHh
Confidence 344667999999999999999999876 9999999999999999998875 34799999999999976 5899999
Q ss_pred ec-cccccCC--ChHHHHHHHHhcccCCcEEEEEEec
Q 020307 238 AG-AALHCWP--SPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 238 ~~-~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+. .+++|+. ++..+|+++.++|||||++++..++
T Consensus 111 ~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 111 MFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp ECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 86 5777774 4568999999999999999987654
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.85 E-value=2.9e-21 Score=164.22 Aligned_cols=107 Identities=26% Similarity=0.418 Sum_probs=96.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
+++.+|||||||+|.++..+++.+. +|+|+|+|++|++.|+++.... ...+.++.+|+.++|+++++||+|++.
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~~~--~v~giD~S~~~i~~ak~~~~~~----~~~~~~~~~d~~~l~~~~~~fD~I~~~ 109 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR----ESNVEFIVGDARKLSFEDKTFDYVIFI 109 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CCCCEEEEECCCcchhhhhHhhhhc--ccccccccccchhhhhhhhccc----cccccccccccccccccCcCceEEEEe
Confidence 3567999999999999999999865 9999999999999999988765 346788999999999999999999999
Q ss_pred cccccCC--ChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 240 AALHCWP--SPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 240 ~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
++++|++ |+.++|+++.++|||||++++..++.
T Consensus 110 ~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~~ 144 (226)
T d1ve3a1 110 DSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL 144 (226)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred cchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcCc
Confidence 9999997 56789999999999999999988754
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.84 E-value=1.9e-20 Score=161.75 Aligned_cols=161 Identities=17% Similarity=0.206 Sum_probs=119.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+. +++|+|+|+.|++.|++++... ..++.++++|+..+++ +++||+|+|.
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~----~~~v~~~~~d~~~~~~-~~~fD~i~~~ 108 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQ----GLKPRLACQDISNLNI-NRKFDLITCC 108 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHT----TCCCEEECCCGGGCCC-SCCEEEEEEC
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhcccccccc----Cccceeeccchhhhcc-ccccccccee
Confidence 3467999999999999999999987 9999999999999999998775 3479999999998876 4689999975
Q ss_pred -cccccCCCh---HHHHHHHHhcccCCcEEEEEEeccCC--CC---cchh--hHH--------HH---------------
Q 020307 240 -AALHCWPSP---SNAVAEISRILRSGGVFVGTTFLRYT--SS---TSLT--GRV--------LR--------------- 285 (328)
Q Consensus 240 -~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~--~~---~~~~--~~~--------~~--------------- 285 (328)
++++|+.++ ..+|++++++|||||.+++....... .. ..+. ... +.
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (246)
T d1y8ca_ 109 LDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDG 188 (246)
T ss_dssp TTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECS
T ss_pred eeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhhhcccCceeecCCcEEEEEeeccCCcceeEEEEEEEecC
Confidence 788888755 46899999999999999976543310 00 0000 000 00
Q ss_pred ---Hhhh--ccCCCCCHHHHHHHHHHCCCeEEEEEEeC---------cEEEEEEeC
Q 020307 286 ---ERIL--QNYNYLTEEEIEDLCTSCGLTNYTSKVQQ---------SFIMFAAQK 327 (328)
Q Consensus 286 ---~~~~--~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~---------~~~~~~a~k 327 (328)
.... .....++.++++++++++||+.++..... .-++++++|
T Consensus 189 ~~~~~~~e~~~~~~~~~~~l~~~l~~~Gf~~i~~~~~~~~~~~~~~s~r~~~v~kk 244 (246)
T d1y8ca_ 189 EFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL 244 (246)
T ss_dssp SSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred CceEEEEEEEEEEcCCHHHHHHHHHHCCCEEEEEEecCCCCCCCCCCceEEEEEEe
Confidence 0000 12246799999999999999988754321 225677776
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.83 E-value=3.5e-20 Score=162.70 Aligned_cols=154 Identities=16% Similarity=0.185 Sum_probs=120.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||.|.++..+++.. +.+|+|+|+|+++++.|+++++..++ ..++.+...|...+ +++||.|
T Consensus 48 l~l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l--~~~~~~~~~d~~~~---~~~fD~i 121 (280)
T d2fk8a1 48 LDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDT--NRSRQVLLQGWEDF---AEPVDRI 121 (280)
T ss_dssp SCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCC--SSCEEEEESCGGGC---CCCCSEE
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhcc--ccchhhhhhhhhhh---ccchhhh
Confidence 667889999999999999999998874 34999999999999999999998875 56778888887655 4689999
Q ss_pred EeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCc------ch------hhHHHHHhhhccCCCCCHHHHHH
Q 020307 237 HAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSST------SL------TGRVLRERILQNYNYLTEEEIED 302 (328)
Q Consensus 237 ~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~~------~~~~~~~~~~~~~~~~~~~~l~~ 302 (328)
++..+++|++++ ..+++++.++|||||++++.+........ .. ....+.....+.....+.+++..
T Consensus 122 ~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~l~~ 201 (280)
T d2fk8a1 122 VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVE 201 (280)
T ss_dssp EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHH
T ss_pred hHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchHhhhh
Confidence 999999999766 78999999999999999998754331110 00 01122222223345678999999
Q ss_pred HHHHCCCeEEEEEE
Q 020307 303 LCTSCGLTNYTSKV 316 (328)
Q Consensus 303 ll~~~Gf~~v~~~~ 316 (328)
+++++||++.....
T Consensus 202 ~~e~aGf~v~~~~~ 215 (280)
T d2fk8a1 202 HGEKAGFTVPEPLS 215 (280)
T ss_dssp HHHHTTCBCCCCEE
T ss_pred hHHhhccccceeee
Confidence 99999999876443
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=8.9e-21 Score=163.21 Aligned_cols=102 Identities=28% Similarity=0.314 Sum_probs=91.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++.. ..++.+|++++|+++++||+|++.
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~---------~~~~~~~~~~l~~~~~~fD~ii~~ 109 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGV---------KNVVEAKAEDLPFPSGAFEAVLAL 109 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTC---------SCEEECCTTSCCSCTTCEEEEEEC
T ss_pred CCCCEEEEECCCCchhcccccccce--EEEEeecccccccccccccc---------cccccccccccccccccccceeee
Confidence 3567999999999999999999875 99999999999999998631 236789999999999999999975
Q ss_pred -cccccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 240 -AALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 240 -~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
.++||++|+..+|+++.++|||||++++.+++.
T Consensus 110 ~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~ 143 (246)
T d2avna1 110 GDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 143 (246)
T ss_dssp SSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred cchhhhhhhHHHHHHHHHhhcCcCcEEEEEECCH
Confidence 689999999999999999999999999998764
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.83 E-value=1.1e-19 Score=160.02 Aligned_cols=154 Identities=12% Similarity=0.102 Sum_probs=121.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...+|.+|||||||.|.++..+++.. +.+|+|+++|+++++.+++++...++ ..++.+...|.. +.+++||.|
T Consensus 57 l~l~~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~~l--~~~v~~~~~d~~---~~~~~fD~i 130 (291)
T d1kpia_ 57 LNLEPGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDS--PRRKEVRIQGWE---EFDEPVDRI 130 (291)
T ss_dssp TCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHSCC--SSCEEEEECCGG---GCCCCCSEE
T ss_pred cCCCCCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhhcc--chhhhhhhhccc---ccccccceE
Confidence 667899999999999999999998774 35999999999999999999998876 567888777763 447899999
Q ss_pred EeccccccCCCh---------HHHHHHHHhcccCCcEEEEEEeccCCCC--------cch----hhHHHHHhhhccCCCC
Q 020307 237 HAGAALHCWPSP---------SNAVAEISRILRSGGVFVGTTFLRYTSS--------TSL----TGRVLRERILQNYNYL 295 (328)
Q Consensus 237 ~~~~vl~h~~d~---------~~~l~~~~r~LkpgG~l~i~~~~~~~~~--------~~~----~~~~~~~~~~~~~~~~ 295 (328)
++..+++|++++ ..+++++.++|||||++++.+....... .+. ...++...........
T Consensus 131 ~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~lp 210 (291)
T d1kpia_ 131 VSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLP 210 (291)
T ss_dssp EEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCC
T ss_pred eechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCCCC
Confidence 999999999874 6899999999999999999887643211 111 0112222222344567
Q ss_pred CHHHHHHHHHHCCCeEEEEEE
Q 020307 296 TEEEIEDLCTSCGLTNYTSKV 316 (328)
Q Consensus 296 ~~~~l~~ll~~~Gf~~v~~~~ 316 (328)
+.+++..+++++||++.....
T Consensus 211 s~~~~~~~~e~~gl~v~~~~~ 231 (291)
T d1kpia_ 211 RISQVDYYSSNAGWKVERYHR 231 (291)
T ss_dssp CHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHhhhcccccccceeee
Confidence 899999999999999887544
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.83 E-value=1.6e-19 Score=156.79 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=120.0
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...+..+|||||||+|.++..++++.|..+++++|+ +++++.+++++...+. ..++.++.+|+.. +.+ ..||+|
T Consensus 77 ~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~--~~ri~~~~~d~~~-~~p-~~~D~v 151 (256)
T d1qzza2 77 YDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL--ADRVTVAEGDFFK-PLP-VTADVV 151 (256)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC--TTTEEEEECCTTS-CCS-CCEEEE
T ss_pred CCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCC--cceeeeeeeeccc-ccc-ccchhh
Confidence 3345667999999999999999999999999999997 7899999999988775 6789999999865 333 459999
Q ss_pred EeccccccCCChH--HHHHHHHhcccCCcEEEEEEeccCC--CCcchhhHHHHH--hhhccCCCCCHHHHHHHHHHCCCe
Q 020307 237 HAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYT--SSTSLTGRVLRE--RILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 237 ~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
++.++|||+++.. ++|++++++|||||+++|.++.... ...+.....+.- .....-...|.++|+++++++||+
T Consensus 152 ~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~ 231 (256)
T d1qzza2 152 LLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLA 231 (256)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEE
T ss_pred hccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCc
Confidence 9999999998774 7799999999999999998865321 111111111110 111234557899999999999999
Q ss_pred EEEEEEe
Q 020307 311 NYTSKVQ 317 (328)
Q Consensus 311 ~v~~~~~ 317 (328)
+++.+..
T Consensus 232 ~~~~~~~ 238 (256)
T d1qzza2 232 LASERTS 238 (256)
T ss_dssp EEEEEEE
T ss_pred eeEEEEe
Confidence 9987653
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.81 E-value=2.6e-19 Score=152.41 Aligned_cols=152 Identities=12% Similarity=0.107 Sum_probs=121.6
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~ 235 (328)
+...++.+|||+|||+|.++..+++.++...|+|+|+|+.+++.++.+... .+++..+.+|....+ ..+..+|+
T Consensus 70 l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~-----~~ni~~i~~d~~~~~~~~~~~~~v 144 (230)
T d1g8sa_ 70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-----RENIIPILGDANKPQEYANIVEKV 144 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-----CTTEEEEECCTTCGGGGTTTCCCE
T ss_pred CCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh-----hcccceEEEeeccCccccccccee
Confidence 567889999999999999999999998888999999999999999988765 568888888886543 45677899
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
+++...++|..++..+++++.+.|||||++++............... ..++..+.|+++||++++..
T Consensus 145 ~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~-------------~~~e~~~~L~~aGF~ive~i 211 (230)
T d1g8sa_ 145 DVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKE-------------IFKEQKEILEAGGFKIVDEV 211 (230)
T ss_dssp EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHH-------------HHHHHHHHHHHHTEEEEEEE
T ss_pred EEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHH-------------HHHHHHHHHHHcCCEEEEEe
Confidence 88888899999999999999999999999999876543211111000 12577889999999999876
Q ss_pred EeCc----EEEEEEe
Q 020307 316 VQQS----FIMFAAQ 326 (328)
Q Consensus 316 ~~~~----~~~~~a~ 326 (328)
.-.+ .++++++
T Consensus 212 dL~py~~~H~~vvg~ 226 (230)
T d1g8sa_ 212 DIEPFEKDHVMFVGI 226 (230)
T ss_dssp ECTTTSTTEEEEEEE
T ss_pred cCCCCcCCeEEEEEE
Confidence 6544 4666665
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.81 E-value=3.6e-19 Score=156.20 Aligned_cols=154 Identities=17% Similarity=0.190 Sum_probs=122.6
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...+|.+|||||||.|.++..+++.. +.+|+|+++|++.++.|++++...++ ..++.+..+|...++ ++||.|
T Consensus 58 l~l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~--~~~v~~~~~d~~~~~---~~fD~i 131 (285)
T d1kpga_ 58 LGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSEN--LRSKRVLLAGWEQFD---EPVDRI 131 (285)
T ss_dssp TTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCC--CSCEEEEESCGGGCC---CCCSEE
T ss_pred cCCCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhh--hhhhHHHHhhhhccc---ccccce
Confidence 667899999999999999999988875 46999999999999999999988776 788999999987764 689999
Q ss_pred EeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCC--------cchh----hHHHHHhhhccCCCCCHHHHHH
Q 020307 237 HAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSS--------TSLT----GRVLRERILQNYNYLTEEEIED 302 (328)
Q Consensus 237 ~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~--------~~~~----~~~~~~~~~~~~~~~~~~~l~~ 302 (328)
++..+++|+.+. ..+++++.++|||||++++.+.....+. .+.. ...+...........+.+++..
T Consensus 132 ~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~~~ 211 (285)
T d1kpga_ 132 VSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQE 211 (285)
T ss_dssp EEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHH
T ss_pred eeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhhHHH
Confidence 999999999654 7899999999999999999776532100 0010 1122222223345678999999
Q ss_pred HHHHCCCeEEEEEE
Q 020307 303 LCTSCGLTNYTSKV 316 (328)
Q Consensus 303 ll~~~Gf~~v~~~~ 316 (328)
+++++||++.+...
T Consensus 212 ~~e~agf~v~~~~~ 225 (285)
T d1kpga_ 212 CASANGFTVTRVQS 225 (285)
T ss_dssp HHHTTTCEEEEEEE
T ss_pred HHHHhchhhccccc
Confidence 99999999887543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=5.4e-20 Score=161.91 Aligned_cols=153 Identities=9% Similarity=0.059 Sum_probs=112.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHh----CC--CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEE--EEecCCC------
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKS----GT--YSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL--VRADVCR------ 225 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~----~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~--~~~d~~~------ 225 (328)
.+..+|||||||+|.++..+++. ++ ...++|+|+|+.|++.+++++..... ..++.+ ...+++.
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 116 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN--LENVKFAWHKETSSEYQSRML 116 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCS--CTTEEEEEECSCHHHHHHHHT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccc--cccccccchhhhhhhhcchhc
Confidence 34458999999999988777653 22 34689999999999999998865321 334443 3333321
Q ss_pred CCCCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHh--hhccCCCCCHHHHHHH
Q 020307 226 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER--ILQNYNYLTEEEIEDL 303 (328)
Q Consensus 226 lp~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l 303 (328)
.+.++++||+|++.++++|++|+..+|+++.++|||||.+++..++..+..... ...+... .+.+..+++.+++.++
T Consensus 117 ~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (280)
T d1jqea_ 117 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKL-WKKYGSRFPQDDLCQYITSDDLTQM 195 (280)
T ss_dssp TSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHH-HHHHGGGSCCCTTSCCCCHHHHHHH
T ss_pred ccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcchHHHH-HHHHHHhcCCCcccccCCHHHHHHH
Confidence 245688999999999999999999999999999999999999988654322222 1111111 2355668899999999
Q ss_pred HHHCCCeEEEEE
Q 020307 304 CTSCGLTNYTSK 315 (328)
Q Consensus 304 l~~~Gf~~v~~~ 315 (328)
|++.||..+...
T Consensus 196 L~~~G~~~~~~~ 207 (280)
T d1jqea_ 196 LDNLGLKYECYD 207 (280)
T ss_dssp HHHHTCCEEEEE
T ss_pred HHHCCCceEEEe
Confidence 999999866543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.80 E-value=3.7e-19 Score=154.12 Aligned_cols=110 Identities=21% Similarity=0.260 Sum_probs=94.3
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-CCCccceEEe
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHA 238 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~i~~ 238 (328)
.++.+|||+|||+|..+..+++.+. .+|+|+|+|+.+++.|+++....+. ..++.+.++|+...++ .+++||+|++
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~--~~~v~f~~~D~~~~~~~~~~~fD~V~~ 99 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKR--RFKVFFRAQDSYGRHMDLGKEFDVISS 99 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCC--SSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred CCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCC--CcceEEEEcchhhhcccccccceEEEE
Confidence 4678999999999999999988863 4799999999999999998876543 4579999999977665 4678999999
Q ss_pred ccccccCCCh----HHHHHHHHhcccCCcEEEEEEecc
Q 020307 239 GAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 239 ~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
.+++||+.++ ..+++++.++|||||++++.+++.
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~ 137 (252)
T d1ri5a_ 100 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 137 (252)
T ss_dssp ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred cceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence 9999998554 468999999999999999988764
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=2.7e-20 Score=161.48 Aligned_cols=147 Identities=18% Similarity=0.261 Sum_probs=108.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCC--------------------------
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT-------------------------- 213 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~-------------------------- 213 (328)
.++.+|||||||+|.++..++..+ ..+|+|+|+|+.+++.|+++++.......
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 457799999999999887777664 34799999999999999998875421000
Q ss_pred CCe-EEEEe----cCCCCCCCCCccceEEeccccccCC----ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHH
Q 020307 214 SNL-ALVRA----DVCRLPFASGFVDAVHAGAALHCWP----SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVL 284 (328)
Q Consensus 214 ~~i-~~~~~----d~~~lp~~~~~fD~i~~~~vl~h~~----d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~ 284 (328)
..+ ..... +....++..++||+|++.+++||++ ++..+++++.++|||||++++.++.........
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~----- 203 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVG----- 203 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEET-----
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceec-----
Confidence 000 11111 1222356788999999999999996 456789999999999999999998654221111
Q ss_pred HHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 285 RERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 285 ~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
....+..+++.++++++|+++||++++.
T Consensus 204 --~~~~~~~~~~~~~~~~~l~~aGf~v~~~ 231 (257)
T d2a14a1 204 --KREFSCVALEKGEVEQAVLDAGFDIEQL 231 (257)
T ss_dssp --TEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred --cccccccCCCHHHHHHHHHHCCCEEEEE
Confidence 1124466889999999999999998875
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=3.7e-19 Score=153.43 Aligned_cols=136 Identities=15% Similarity=0.223 Sum_probs=114.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++++.++ .++.+..+|+.. .++.++||+|+++
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~g~--~V~gvDis~~av~~A~~na~~n~----~~~~~~~~d~~~-~~~~~~fD~V~an 191 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNG----VRPRFLEGSLEA-ALPFGPFDLLVAN 191 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTT----CCCEEEESCHHH-HGGGCCEEEEEEE
T ss_pred CccCEEEEcccchhHHHHHHHhcCC--EEEEEECChHHHHHHHHHHHHcC----CceeEEeccccc-cccccccchhhhc
Confidence 5788999999999999999998876 89999999999999999998765 356788888754 3457899999987
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEeCc
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS 319 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~~~ 319 (328)
...++ ...+++++.++|||||+++++..... ..+++.+.++++||++++....+.
T Consensus 192 i~~~~---l~~l~~~~~~~LkpGG~lilSgil~~----------------------~~~~v~~~~~~~Gf~~~~~~~~~~ 246 (254)
T d2nxca1 192 LYAEL---HAALAPRYREALVPGGRALLTGILKD----------------------RAPLVREAMAGAGFRPLEEAAEGE 246 (254)
T ss_dssp CCHHH---HHHHHHHHHHHEEEEEEEEEEEEEGG----------------------GHHHHHHHHHHTTCEEEEEEEETT
T ss_pred ccccc---HHHHHHHHHHhcCCCcEEEEEecchh----------------------hHHHHHHHHHHCCCEEEEEEEECC
Confidence 55443 46778999999999999999764321 246788999999999999999999
Q ss_pred EEEEEEeC
Q 020307 320 FIMFAAQK 327 (328)
Q Consensus 320 ~~~~~a~k 327 (328)
|..++++|
T Consensus 247 Wv~l~~~r 254 (254)
T d2nxca1 247 WVLLAYGR 254 (254)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99988886
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=3.7e-18 Score=145.60 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=113.5
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCc--------------CCCCCeEEEE
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT--------------ILTSNLALVR 220 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~--------------~~~~~i~~~~ 220 (328)
.++...++.+|||+|||+|..+..|++.|. +|+|+|+|+.+++.|+++....+. ....++.+++
T Consensus 39 ~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~--~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 116 (229)
T d2bzga1 39 TFLKGKSGLRVFFPLCGKAVEMKWFADRGH--SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYC 116 (229)
T ss_dssp HHHTTCCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEE
T ss_pred HhcCCCCCCEEEEeCCCCcHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEE
Confidence 444566888999999999999999999987 999999999999999987653210 0135789999
Q ss_pred ecCCCCC-CCCCccceEEeccccccCCC--hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCH
Q 020307 221 ADVCRLP-FASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTE 297 (328)
Q Consensus 221 ~d~~~lp-~~~~~fD~i~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (328)
+|+..++ ...+.||+|+...+++|++. ...+++++.++|||||++++.++...... ........++
T Consensus 117 ~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~-----------~~gpp~~~~~ 185 (229)
T d2bzga1 117 CSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTK-----------HPGPPFYVPH 185 (229)
T ss_dssp SCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTT-----------CCCSSCCCCH
T ss_pred cchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCC-----------CCCCCCCCCH
Confidence 9998775 56789999999999999963 36889999999999999998887653211 0122356789
Q ss_pred HHHHHHHHHCCCeEEE
Q 020307 298 EEIEDLCTSCGLTNYT 313 (328)
Q Consensus 298 ~~l~~ll~~~Gf~~v~ 313 (328)
+++++++.. +|.+..
T Consensus 186 ~el~~lf~~-~~~i~~ 200 (229)
T d2bzga1 186 AEIERLFGK-ICNIRC 200 (229)
T ss_dssp HHHHHHHTT-TEEEEE
T ss_pred HHHHHHhcC-CCEEEE
Confidence 999999965 665533
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.76 E-value=4.5e-18 Score=141.40 Aligned_cols=145 Identities=11% Similarity=0.168 Sum_probs=112.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||+|||+|.++..+++.++ +|+++|+|+.+++.++++++..++. ..++.+..+|+.+ ++++++||+|
T Consensus 48 l~~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~-~~~i~~~~~d~~~-~~~~~~fD~I 123 (194)
T d1dusa_ 48 VVVDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLD-NYDIRVVHSDLYE-NVKDRKYNKI 123 (194)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCT-TSCEEEEECSTTT-TCTTSCEEEE
T ss_pred CCcCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCc-cceEEEEEcchhh-hhccCCceEE
Confidence 5566789999999999999999999887 9999999999999999998877642 4568999999876 5568899999
Q ss_pred EeccccccCCCh-HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEE
Q 020307 237 HAGAALHCWPSP-SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 237 ~~~~vl~h~~d~-~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~ 315 (328)
+++.++++..+. ..+++++.++|||||++++...... ..+.+...+++.+-.+....
T Consensus 124 i~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~----------------------~~~~~~~~l~~~f~~~~~~~ 181 (194)
T d1dusa_ 124 ITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ----------------------GAKSLAKYMKDVFGNVETVT 181 (194)
T ss_dssp EECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTH----------------------HHHHHHHHHHHHHSCCEEEE
T ss_pred EEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeCcC----------------------CHHHHHHHHHHhCCcEEEEE
Confidence 999888776654 5789999999999999988654321 01233344444333334445
Q ss_pred EeCcEEEEEEeC
Q 020307 316 VQQSFIMFAAQK 327 (328)
Q Consensus 316 ~~~~~~~~~a~k 327 (328)
....|.++.++|
T Consensus 182 ~~~gf~vl~a~K 193 (194)
T d1dusa_ 182 IKGGYRVLKSKK 193 (194)
T ss_dssp EETTEEEEEEEC
T ss_pred ecCCcEEEEEEE
Confidence 678888888887
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.76 E-value=1.6e-18 Score=143.81 Aligned_cols=143 Identities=12% Similarity=0.081 Sum_probs=110.7
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCc---------CCCCCeEEEEecCCCCC
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT---------ILTSNLALVRADVCRLP 227 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~---------~~~~~i~~~~~d~~~lp 227 (328)
+...++.+|||+|||+|..+..|+++|. +|+|+|+|+.|++.|+++.+..+. .....+.++.+|+..++
T Consensus 16 l~~~~~~rvLd~GCG~G~~a~~la~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 93 (201)
T d1pjza_ 16 LNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 93 (201)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHcCC--ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc
Confidence 5667899999999999999999999987 999999999999999998764321 01345678999998876
Q ss_pred -CCCCccceEEeccccccCCC--hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHH
Q 020307 228 -FASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLC 304 (328)
Q Consensus 228 -~~~~~fD~i~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 304 (328)
.....||+|++..+++|+++ ....++++.++|||||++++.......... .......+.+++++++
T Consensus 94 ~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~-----------~~p~~~~~~~el~~l~ 162 (201)
T d1pjza_ 94 ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALL-----------EGPPFSVPQTWLHRVM 162 (201)
T ss_dssp HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSS-----------SSCCCCCCHHHHHHTS
T ss_pred cccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccC-----------CCccccCCHHHHHHHh
Confidence 34568999999999999975 468899999999999999887765532111 0223456778888776
Q ss_pred HHCCCeEEE
Q 020307 305 TSCGLTNYT 313 (328)
Q Consensus 305 ~~~Gf~~v~ 313 (328)
. .+|++..
T Consensus 163 ~-~~~~i~~ 170 (201)
T d1pjza_ 163 S-GNWEVTK 170 (201)
T ss_dssp C-SSEEEEE
T ss_pred C-CCcEEEE
Confidence 4 5666543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=5.1e-19 Score=154.21 Aligned_cols=160 Identities=19% Similarity=0.190 Sum_probs=111.7
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCC---------------------------
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL--------------------------- 212 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~--------------------------- 212 (328)
.++.+|||+|||+|.+....+... ..+|+|+|+|+.+++.+++.+.......
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 467899999999997765444332 2389999999999999998775422100
Q ss_pred CCCeEEEEecCCC------CCCCCCccceEEeccccccCC----ChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhH
Q 020307 213 TSNLALVRADVCR------LPFASGFVDAVHAGAALHCWP----SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR 282 (328)
Q Consensus 213 ~~~i~~~~~d~~~------lp~~~~~fD~i~~~~vl~h~~----d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~ 282 (328)
........+|+.. .+...++||+|++.++|||++ ++..+++++.++|||||+|++.++........
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~---- 207 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLA---- 207 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEE----
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCccccc----
Confidence 0001233455532 234467899999999999995 45688999999999999999988765321111
Q ss_pred HHHHhhhccCCCCCHHHHHHHHHHCCCeEEEEEEe-------------CcEEEEEEeC
Q 020307 283 VLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ-------------QSFIMFAAQK 327 (328)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~~~~-------------~~~~~~~a~k 327 (328)
........+++.++++++|+++||++++.... ..+++++|||
T Consensus 208 ---~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~~~~~~~~~~~~~~d~~~~~~~~ArK 262 (263)
T d2g72a1 208 ---GEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQK 262 (263)
T ss_dssp ---TTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGCCTTBCCCEEEEEEEEE
T ss_pred ---CCcccccCCCCHHHHHHHHHHCCCeEEEEEEeeccCcccccccccceEEEEEEEe
Confidence 01112345789999999999999998864321 2346778887
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.75 E-value=1.6e-17 Score=137.09 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=95.5
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
.+...++.+|||+|||+|.++..+++.+. +|+|+|+++++++.|+++++..++ ..++.++++|+.+.+.....||+
T Consensus 28 ~l~~~~g~~VLDiGcGsG~~s~~lA~~~~--~V~avD~~~~~l~~a~~n~~~~gl--~~~v~~~~gda~~~~~~~~~~D~ 103 (186)
T d1l3ia_ 28 LAEPGKNDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTEMNLQRHGL--GDNVTLMEGDAPEALCKIPDIDI 103 (186)
T ss_dssp HHCCCTTCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTC--CTTEEEEESCHHHHHTTSCCEEE
T ss_pred hcCCCCCCEEEEEECCeEcccccccccce--EEEEecCCHHHHHHHHHHHHHcCC--CcceEEEECchhhcccccCCcCE
Confidence 46778899999999999999999998765 999999999999999999998875 57999999999887777789999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
|++....+| ...+++.+.+.|||||++++...
T Consensus 104 v~~~~~~~~---~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 104 AVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp EEESCCTTC---HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEEeCcccc---chHHHHHHHHHhCcCCEEEEEee
Confidence 999876554 57889999999999999988764
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.75 E-value=1.3e-17 Score=139.75 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=93.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...|+.+|||+|||+|..+..+++..+..+|+|+|+|+.+++.++++.+. ..++.++.+|....+.....+|.+
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~-----~~ni~~i~~d~~~~~~~~~~~~~v 126 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-----RNNIIPLLFDASKPWKYSGIVEKV 126 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-----CSSEEEECSCTTCGGGTTTTCCCE
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc-----cCCceEEEeeccCccccccccceE
Confidence 567789999999999999999999987777999999999999999998876 568999999998776555555544
Q ss_pred E-eccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 237 H-AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 237 ~-~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
. +...+.|..++..+++++.++|||||++++....
T Consensus 127 d~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 127 DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred EEEEecccChhhHHHHHHHHHHHhccCCeEEEEEEc
Confidence 3 3456778888899999999999999999998753
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.74 E-value=7.8e-18 Score=144.43 Aligned_cols=130 Identities=19% Similarity=0.215 Sum_probs=107.1
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCcc
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 233 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f 233 (328)
..+...+|.+|||+|||+|.++..+++. ++..+|+++|+++++++.|+++++..+. ..++.+..+|+.+. +++++|
T Consensus 79 ~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~--~~nv~~~~~Di~~~-~~~~~f 155 (250)
T d1yb2a1 79 MRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD--IGNVRTSRSDIADF-ISDQMY 155 (250)
T ss_dssp --CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC--CTTEEEECSCTTTC-CCSCCE
T ss_pred HHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC--CCceEEEEeeeecc-ccccee
Confidence 3467789999999999999999999986 6777999999999999999999987543 67899999999775 457899
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
|.|++ ++++|..+++++.++|||||++++..|+. .. .+.+.+.+++.||..++
T Consensus 156 D~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~i---------~Q-------------v~~~~~~l~~~gf~~i~ 208 (250)
T d1yb2a1 156 DAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNF---------DQ-------------SEKTVLSLSASGMHHLE 208 (250)
T ss_dssp EEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSH---------HH-------------HHHHHHHSGGGTEEEEE
T ss_pred eeeee-----cCCchHHHHHHHHHhcCCCceEEEEeCCc---------Ch-------------HHHHHHHHHHCCCceeE
Confidence 99985 57899999999999999999999977642 11 13455667889997665
Q ss_pred E
Q 020307 314 S 314 (328)
Q Consensus 314 ~ 314 (328)
.
T Consensus 209 ~ 209 (250)
T d1yb2a1 209 T 209 (250)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.73 E-value=4.8e-18 Score=146.69 Aligned_cols=113 Identities=18% Similarity=0.217 Sum_probs=99.8
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCcc
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 233 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f 233 (328)
..+...|+.+|||+|||+|.++..|++. ++..+|+++|+++++++.|+++++........++.++.+|+.+.++++++|
T Consensus 90 ~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~f 169 (264)
T d1i9ga_ 90 HEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSV 169 (264)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCE
T ss_pred HHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCc
Confidence 4567789999999999999999999987 788899999999999999999887642112578999999999888889999
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
|.|++ |+++|..++.++.++|||||++++..|+.
T Consensus 170 DaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 170 DRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp EEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred ceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCcc
Confidence 99985 68999999999999999999999988763
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.3e-18 Score=148.40 Aligned_cols=105 Identities=13% Similarity=0.217 Sum_probs=88.0
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC--CCCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~--lp~~~~~fD~i~ 237 (328)
.++++|||||||+|..+..+++..+ .+++|+|+|+.+++.|+++.... ..++.++..++.. .++++++||.|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~fD~i~ 126 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTLPDGHFDGIL 126 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhc----cccccccccccccccccccccccccee
Confidence 4678999999999999999998753 58999999999999999998764 4467777777543 346678888887
Q ss_pred -----eccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 238 -----AGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 238 -----~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+..+++|+.++..+++++.|+|||||+|++.+
T Consensus 127 fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 127 YDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp ECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ecccccccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 56788999999999999999999999998744
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.70 E-value=1.3e-16 Score=136.82 Aligned_cols=155 Identities=18% Similarity=0.194 Sum_probs=115.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
....+|||||||+|.++..++++.|..+++.+|. +..++.+ .. ..++.++.+|+.+ +.+ ..|++++.
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~-------~~--~~ri~~~~gd~~~-~~p--~~D~~~l~ 146 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA-------PP--LSGIEHVGGDMFA-SVP--QGDAMILK 146 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-------CC--CTTEEEEECCTTT-CCC--CEEEEEEE
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc-------CC--CCCeEEecCCccc-ccc--cceEEEEe
Confidence 3457999999999999999999999999999997 4444322 11 6789999999864 333 45999999
Q ss_pred cccccCCChH--HHHHHHHhcccCCcEEEEEEeccCCCCc-chhhHH--HHH---hhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 240 AALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRV--LRE---RILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 240 ~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~--~~~---~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
++||+++|.. .+|+++++.|+|||+++|.+...+.... +..... ... .....-...|.++|+++++++||+.
T Consensus 147 ~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~ 226 (244)
T d1fp1d2 147 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSK 226 (244)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSE
T ss_pred hhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCc
Confidence 9999998764 7899999999999999999976542211 111111 000 0112233568999999999999998
Q ss_pred EEEEE--eCcEEEEEEeC
Q 020307 312 YTSKV--QQSFIMFAAQK 327 (328)
Q Consensus 312 v~~~~--~~~~~~~~a~k 327 (328)
+++.. ...+.++.++|
T Consensus 227 v~v~~~~~~~~~viE~~K 244 (244)
T d1fp1d2 227 FQVACRAFNSLGVMEFYK 244 (244)
T ss_dssp EEEEEEETTTEEEEEEEC
T ss_pred eEEEecCCCCEEEEEEeC
Confidence 88643 36778999987
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.70 E-value=3.6e-16 Score=132.26 Aligned_cols=150 Identities=15% Similarity=0.144 Sum_probs=112.0
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC---CCCCCc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFASGF 232 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p~~~~~ 232 (328)
+...||.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.++++++. ..++..+..|.... +.....
T Consensus 69 l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~-----~~~~~~i~~d~~~~~~~~~~~~~ 143 (227)
T d1g8aa_ 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-----RRNIVPILGDATKPEEYRALVPK 143 (227)
T ss_dssp CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-----CTTEEEEECCTTCGGGGTTTCCC
T ss_pred cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh-----cCCceEEEEECCCcccccccccc
Confidence 56779999999999999999999987 6778999999999999999998765 56788888887543 334467
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
+|+|++ .+.|..++..+++++.+.|||||+++++........... .+.. ..+..+ +.+.||+++
T Consensus 144 vD~i~~--d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~-~~~v------------~~~v~~-l~~~gf~ii 207 (227)
T d1g8aa_ 144 VDVIFE--DVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKE-PEQV------------FREVER-ELSEYFEVI 207 (227)
T ss_dssp EEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSC-HHHH------------HHHHHH-HHHTTSEEE
T ss_pred eEEEEE--EccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCC-HHHH------------HHHHHH-HHHcCCEEE
Confidence 887765 456667788999999999999999999875432111111 0100 123334 346799999
Q ss_pred EEEEeCc----EEEEEEeC
Q 020307 313 TSKVQQS----FIMFAAQK 327 (328)
Q Consensus 313 ~~~~~~~----~~~~~a~k 327 (328)
+...-.+ .++++++|
T Consensus 208 e~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 208 ERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp EEEECTTTSSSEEEEEEEC
T ss_pred EEEcCCCCCCceEEEEEEe
Confidence 8766544 48899988
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.69 E-value=1e-16 Score=133.65 Aligned_cols=105 Identities=18% Similarity=0.254 Sum_probs=93.7
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCccceEEec
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAG 239 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~i~~~ 239 (328)
...|||||||+|.++..+++..|+..++|+|+++.++..|.+++...+ ..|+.++.+|+..+. ++++++|.|++.
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~---l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~ 106 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE---AQNVKLLNIDADTLTDVFEPGEVKRVYLN 106 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC---CSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHh---ccCchhcccchhhhhcccCchhhhccccc
Confidence 458999999999999999999999999999999999999999998877 579999999998765 788999999988
Q ss_pred cccccCCCh--------HHHHHHHHhcccCCcEEEEEE
Q 020307 240 AALHCWPSP--------SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 240 ~vl~h~~d~--------~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+...|.... ..+|+++.|+|||||.|++.+
T Consensus 107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 877665443 378999999999999999977
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=1e-16 Score=134.89 Aligned_cols=105 Identities=14% Similarity=0.180 Sum_probs=91.9
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 234 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD 234 (328)
.+...++.+|||||||+|+++..+++. ++...|+++|+++++++.|+++++..+ ..++.++.+|..+.+..+++||
T Consensus 70 ~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~---~~n~~~~~~d~~~~~~~~~~fD 146 (213)
T d1dl5a1 70 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG---IENVIFVCGDGYYGVPEFSPYD 146 (213)
T ss_dssp HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGCCGGGCCEE
T ss_pred hhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc---ccccccccCchHHccccccchh
Confidence 366788999999999999999999886 566789999999999999999998876 6789999999987776788999
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+|++..+++|+++ ++.+.|||||++++..
T Consensus 147 ~I~~~~~~~~~p~------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 147 VIFVTVGVDEVPE------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp EEEECSBBSCCCH------HHHHHEEEEEEEEEEB
T ss_pred hhhhhccHHHhHH------HHHHhcCCCcEEEEEE
Confidence 9999999999863 4677899999998854
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.67 E-value=1.3e-16 Score=138.32 Aligned_cols=130 Identities=18% Similarity=0.217 Sum_probs=106.9
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCcc
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 233 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f 233 (328)
..+...++.+|||+|||+|.++..+++. ++..+|+++|+++++++.|+++++..++ ..++.+...|+.. .+....|
T Consensus 97 ~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~--~~~v~~~~~d~~~-~~~~~~~ 173 (266)
T d1o54a_ 97 MMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL--IERVTIKVRDISE-GFDEKDV 173 (266)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC--GGGEEEECCCGGG-CCSCCSE
T ss_pred HhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc--ccCcEEEeccccc-cccccce
Confidence 5577889999999999999999999987 5678999999999999999999998774 5678888888643 3456678
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
|.|+ +|+++|..+++++.++|||||++++..|+.. . .+.+.+.+++.||..++
T Consensus 174 D~V~-----~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~---------Q-------------v~~~~~~l~~~gF~~i~ 226 (266)
T d1o54a_ 174 DALF-----LDVPDPWNYIDKCWEALKGGGRFATVCPTTN---------Q-------------VQETLKKLQELPFIRIE 226 (266)
T ss_dssp EEEE-----ECCSCGGGTHHHHHHHEEEEEEEEEEESSHH---------H-------------HHHHHHHHHHSSEEEEE
T ss_pred eeeE-----ecCCCHHHHHHHHHhhcCCCCEEEEEeCccc---------H-------------HHHHHHHHHHCCceeEE
Confidence 8775 5889999999999999999999999876421 1 13566778899997766
Q ss_pred E
Q 020307 314 S 314 (328)
Q Consensus 314 ~ 314 (328)
.
T Consensus 227 ~ 227 (266)
T d1o54a_ 227 V 227 (266)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=1.5e-16 Score=140.38 Aligned_cols=114 Identities=22% Similarity=0.258 Sum_probs=86.9
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcC-CCCCeEEEEecCCCCC---CCCC
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-LTSNLALVRADVCRLP---FASG 231 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~~~i~~~~~d~~~lp---~~~~ 231 (328)
.+...++.+|||+|||+|.++..|++.+. +|+|+|+|+.|++.|+++....+.. ......+..+++..++ ...+
T Consensus 51 ~l~~~~~~~vLD~GcG~G~~~~~la~~g~--~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (292)
T d1xvaa_ 51 LLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGD 128 (292)
T ss_dssp HHHHTTCCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTT
T ss_pred HhhhcCCCEEEEecCCCcHHHHHHHHcCC--eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCC
Confidence 35556678999999999999999999876 9999999999999999887654320 0113344555543221 1246
Q ss_pred ccceEEec-cccccCCCh-------HHHHHHHHhcccCCcEEEEEEec
Q 020307 232 FVDAVHAG-AALHCWPSP-------SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 232 ~fD~i~~~-~vl~h~~d~-------~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+||+|++. .+++|++++ ..+|+++.++|||||+|++...+
T Consensus 129 ~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 176 (292)
T d1xvaa_ 129 GFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176 (292)
T ss_dssp CEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence 89999875 589999764 46899999999999999997764
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.64 E-value=2e-15 Score=125.66 Aligned_cols=105 Identities=21% Similarity=0.263 Sum_probs=89.4
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--CCCCccceEEec
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAG 239 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~i~~~ 239 (328)
...|||||||+|.++..+++..|+..++|+|+++.++..|.+++...+ ..|+.++.+|+..+. ++++++|.|++.
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~---l~Ni~~~~~da~~l~~~~~~~~~~~i~i~ 108 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG---VPNIKLLWVDGSDLTDYFEDGEIDRLYLN 108 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC---CSSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhc---cccceeeecCHHHHhhhccCCceehhccc
Confidence 458999999999999999999999999999999999999999998876 679999999998765 678899999865
Q ss_pred cccccCCCh--------HHHHHHHHhcccCCcEEEEEE
Q 020307 240 AALHCWPSP--------SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 240 ~vl~h~~d~--------~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+.-.+.... ..+|+.+.++|||||.+++.|
T Consensus 109 fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 109 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 532221111 578999999999999999977
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.61 E-value=4.1e-15 Score=127.28 Aligned_cols=153 Identities=16% Similarity=0.187 Sum_probs=113.0
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
...+|||||||+|.++..++++.|..++++.|. +..++.+. . ..++.++.+|+.+. .+ .+|++++.+
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~-------~--~~rv~~~~gD~f~~-~p--~aD~~~l~~ 146 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS-------G--SNNLTYVGGDMFTS-IP--NADAVLLKY 146 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-------C--BTTEEEEECCTTTC-CC--CCSEEEEES
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc-------c--cCceEEEecCcccC-CC--CCcEEEEEe
Confidence 346899999999999999999999999999998 44443322 1 67999999999753 22 579999999
Q ss_pred ccccCCChH--HHHHHHHhcccCC---cEEEEEEeccCCCCc-chhh--HHHHHh--hhccCCCCCHHHHHHHHHHCCCe
Q 020307 241 ALHCWPSPS--NAVAEISRILRSG---GVFVGTTFLRYTSST-SLTG--RVLRER--ILQNYNYLTEEEIEDLCTSCGLT 310 (328)
Q Consensus 241 vl~h~~d~~--~~l~~~~r~Lkpg---G~l~i~~~~~~~~~~-~~~~--~~~~~~--~~~~~~~~~~~~l~~ll~~~Gf~ 310 (328)
+||+++|.. ++|+++++.|+|| |++++.+...+.... +... ..+... ....-...|.++|+++++++||+
T Consensus 147 vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~ 226 (244)
T d1fp2a2 147 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQ 226 (244)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCC
T ss_pred ecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCc
Confidence 999999875 7899999999998 788888765442222 1111 111111 11223456899999999999999
Q ss_pred EEEEEE-eCcEEEEEEe
Q 020307 311 NYTSKV-QQSFIMFAAQ 326 (328)
Q Consensus 311 ~v~~~~-~~~~~~~~a~ 326 (328)
.++++. .+...++.++
T Consensus 227 ~~~i~~~~~~~svIE~~ 243 (244)
T d1fp2a2 227 HYKISPLTGFLSLIEIY 243 (244)
T ss_dssp EEEEEEEETTEEEEEEE
T ss_pred eEEEEECCCCeEEEEEe
Confidence 998655 3556666665
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2e-15 Score=127.71 Aligned_cols=107 Identities=23% Similarity=0.354 Sum_probs=90.6
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcC--CCCCeEEEEecCCCCCCCCCccc
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRLPFASGFVD 234 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~--~~~~i~~~~~d~~~lp~~~~~fD 234 (328)
...++.+|||||||+|+.+..+++. ++..+|+++|+++++++.|+++++..++. ...++.+..+|....+.++++||
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD 152 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 152 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhh
Confidence 4568999999999999999999886 66779999999999999999998765421 14578999999988777788999
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+|++..+++++++ ++.+.|||||++++...
T Consensus 153 ~I~~~~~~~~ip~------~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 153 AIHVGAAAPVVPQ------ALIDQLKPGGRLILPVG 182 (224)
T ss_dssp EEEECSBBSSCCH------HHHHTEEEEEEEEEEES
T ss_pred hhhhhcchhhcCH------HHHhhcCCCcEEEEEEc
Confidence 9999999999853 47789999999998653
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.5e-15 Score=135.89 Aligned_cols=116 Identities=14% Similarity=0.157 Sum_probs=94.0
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc-------CcCCCCCeEEEEecCCCCC
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-------NTILTSNLALVRADVCRLP 227 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-------~~~~~~~i~~~~~d~~~lp 227 (328)
+.+...++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|++..+.. +. ...++.++++|+.+++
T Consensus 145 ~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~-~~~~i~~~~gd~~~~~ 223 (328)
T d1nw3a_ 145 DEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK-KHAEYTLERGDFLSEE 223 (328)
T ss_dssp HHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTC-CCCCEEEEECCTTSHH
T ss_pred HHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccc-cCCceEEEECcccccc
Confidence 345677899999999999999999998876678999999999999998776541 11 1468999999999988
Q ss_pred CCCCccce-EEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 228 FASGFVDA-VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 228 ~~~~~fD~-i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+.+..+|+ |++.+.+.|.+++...|+++.++|||||++++..+.
T Consensus 224 ~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~ 268 (328)
T d1nw3a_ 224 WRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPF 268 (328)
T ss_dssp HHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred cccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEeccc
Confidence 77666654 444456678888889999999999999999987644
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=3.7e-15 Score=132.27 Aligned_cols=113 Identities=18% Similarity=0.198 Sum_probs=92.1
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCc--------CCCCCeEEEEecCCC
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNT--------ILTSNLALVRADVCR 225 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~--------~~~~~i~~~~~d~~~ 225 (328)
..+...+|.+|||+|||+|.++..|++. ++..+|+++|+++++++.|+++++..+. ....++.+..+|+..
T Consensus 92 ~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~ 171 (324)
T d2b25a1 92 SMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISG 171 (324)
T ss_dssp HHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTC
T ss_pred HHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhh
Confidence 4567889999999999999999999987 7788999999999999999999875321 124689999999876
Q ss_pred CC--CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 226 LP--FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 226 lp--~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
.. +++..||.|++ .+++|..++.++.++|||||++++..|+.
T Consensus 172 ~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 172 ATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp CC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred cccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 53 45678999986 57889999999999999999999987653
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.57 E-value=7.6e-15 Score=123.58 Aligned_cols=101 Identities=17% Similarity=0.193 Sum_probs=86.6
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
.+...++.+|||||||+|+++..|++... +|+++|+++.+++.|++++.. ..++.++.+|........++||+
T Consensus 65 ~L~l~~g~~VLdIG~GsGy~ta~La~l~~--~V~aiE~~~~~~~~A~~~~~~-----~~nv~~~~~d~~~g~~~~~pfD~ 137 (224)
T d1vbfa_ 65 ELDLHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSY-----YNNIKLILGDGTLGYEEEKPYDR 137 (224)
T ss_dssp HTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTT-----CSSEEEEESCGGGCCGGGCCEEE
T ss_pred HhhhcccceEEEecCCCCHHHHHHHHHhc--ccccccccHHHHHHHHHHHhc-----ccccccccCchhhcchhhhhHHH
Confidence 36678899999999999999999999875 999999999999999998775 56999999998664445688999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
|++..+++++++ .+.+.|||||++++-.
T Consensus 138 Iiv~~a~~~ip~------~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 138 VVVWATAPTLLC------KPYEQLKEGGIMILPI 165 (224)
T ss_dssp EEESSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred HHhhcchhhhhH------HHHHhcCCCCEEEEEE
Confidence 999999998853 4567899999998853
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.55 E-value=2.1e-14 Score=122.91 Aligned_cols=151 Identities=16% Similarity=0.161 Sum_probs=109.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
...+|||||||+|.++..++++.|+.+++++|..+ .++.++. ..++.++.+|+.. +.+ ..|++++.+
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~~---------~~r~~~~~~d~~~-~~P--~ad~~~l~~ 147 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAPS---------YPGVEHVGGDMFV-SIP--KADAVFMKW 147 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCCC---------CTTEEEEECCTTT-CCC--CCSCEECSS
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhccc---------CCceEEecccccc-cCC--CcceEEEEE
Confidence 35689999999999999999999999999999854 3332221 6789999999854 333 358889999
Q ss_pred ccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhH---HHHHh----hhccCCCCCHHHHHHHHHHCCCeE
Q 020307 241 ALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR---VLRER----ILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 241 vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
++|++++. ..+|+++++.|+|||++++.+............. .+... ....-...+.++++++++++||+.
T Consensus 148 vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~ 227 (243)
T d1kyza2 148 ICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQG 227 (243)
T ss_dssp SSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSC
T ss_pred EeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCc
Confidence 99999865 4889999999999999999886543222111111 11111 111234568999999999999999
Q ss_pred EEEEE-eCcEEEEE
Q 020307 312 YTSKV-QQSFIMFA 324 (328)
Q Consensus 312 v~~~~-~~~~~~~~ 324 (328)
++++. .....++.
T Consensus 228 vkv~~~~~~~~viE 241 (243)
T d1kyza2 228 FKVHCNAFNTYIME 241 (243)
T ss_dssp EEEEEEETTEEEEE
T ss_pred EEEEEeCCCCEEEE
Confidence 98653 34455554
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.51 E-value=5.8e-14 Score=125.56 Aligned_cols=104 Identities=18% Similarity=0.304 Sum_probs=88.7
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|||||||+|.++..+++.|. .+|+|+|.|+ +++.|++.....+. ..++.++.+|+.++++++.+||+|++
T Consensus 36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~-~~~~a~~~~~~~~~--~~~i~~i~~~~~~l~~~~~~~D~i~s 111 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSS-IIEMAKELVELNGF--SDKITLLRGKLEDVHLPFPKVDIIIS 111 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESST-HHHHHHHHHHHTTC--TTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred cCCcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCH-HHHHHHHHHHHhCc--cccceEEEeehhhccCcccceeEEEE
Confidence 34688999999999999999999873 4899999996 67888888887775 67899999999999998999999998
Q ss_pred ccccc---cCCChHHHHHHHHhcccCCcEEE
Q 020307 239 GAALH---CWPSPSNAVAEISRILRSGGVFV 266 (328)
Q Consensus 239 ~~vl~---h~~d~~~~l~~~~r~LkpgG~l~ 266 (328)
..+.+ +......++..+.++|||||+++
T Consensus 112 e~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 112 EWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 66554 44567788999999999999985
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=3.4e-13 Score=116.65 Aligned_cols=128 Identities=13% Similarity=0.165 Sum_probs=102.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEecc
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 240 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~ 240 (328)
.+.+|||+|||+|..+..++...|..+|+++|+|+.+++.|++++...+ ..++.++.+|+.. ++++++||+|+++-
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~---~~~v~~~~~d~~~-~~~~~~fDlIvsNP 183 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA---IKNIHILQSDWFS-ALAGQQFAMIVSNP 183 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT---CCSEEEECCSTTG-GGTTCCEEEEEECC
T ss_pred cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhC---cccceeeeccccc-ccCCCceeEEEecc
Confidence 4578999999999999999999999999999999999999999998876 4579999999865 34567999999971
Q ss_pred -------------ccccCCC------------hHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCC
Q 020307 241 -------------ALHCWPS------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYL 295 (328)
Q Consensus 241 -------------vl~h~~d------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (328)
++.|-|. ..++++++.+.|+|||.+++.... -
T Consensus 184 PYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~-----------------------~ 240 (274)
T d2b3ta1 184 PYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW-----------------------Q 240 (274)
T ss_dssp CCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS-----------------------S
T ss_pred hhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc-----------------------h
Confidence 2222221 135788999999999999985311 1
Q ss_pred CHHHHHHHHHHCCCeEEEEE
Q 020307 296 TEEEIEDLCTSCGLTNYTSK 315 (328)
Q Consensus 296 ~~~~l~~ll~~~Gf~~v~~~ 315 (328)
..+.+.+++++.||..++..
T Consensus 241 q~~~v~~~l~~~gf~~i~~~ 260 (274)
T d2b3ta1 241 QGEAVRQAFILAGYHDVETC 260 (274)
T ss_dssp CHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHHHCCCCeEEEE
Confidence 24678899999999766543
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=1.5e-13 Score=122.18 Aligned_cols=105 Identities=15% Similarity=0.252 Sum_probs=87.5
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++++|||||||+|.++..+++.|. .+|+|+|.|+.+ ..+++.....++ ..++.++.+|+.+++++.++||+|++
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~-~~a~~~~~~n~~--~~~v~~~~~~~~~~~~~~~~~D~ivs 106 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSIS-DYAVKIVKANKL--DHVVTIIKGKVEEVELPVEKVDIIIS 106 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTH-HHHHHHHHHTTC--TTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred cCCcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHH-hhhhhHHHHhCC--ccccceEeccHHHcccccceeEEEee
Confidence 34688999999999999999999874 379999999864 666666666664 67899999999999988899999998
Q ss_pred ccccccC---CChHHHHHHHHhcccCCcEEEE
Q 020307 239 GAALHCW---PSPSNAVAEISRILRSGGVFVG 267 (328)
Q Consensus 239 ~~vl~h~---~d~~~~l~~~~r~LkpgG~l~i 267 (328)
..+.+++ .....++..+.++|||||+++-
T Consensus 107 ~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 107 EWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp CCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 7665554 3567899999999999999863
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.46 E-value=1.2e-13 Score=115.42 Aligned_cols=104 Identities=14% Similarity=0.160 Sum_probs=89.3
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
.+...++.+|||||||+|+.+..+++.. +.+|+++|.++.+++.|++++...+ ..++.++.+|........++||.
T Consensus 73 ~L~l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g---~~nv~~~~gd~~~g~~~~~pfD~ 148 (215)
T d1jg1a_ 73 IANLKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAG---VKNVHVILGDGSKGFPPKAPYDV 148 (215)
T ss_dssp HHTCCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGCCGGGCCEEE
T ss_pred hhccCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcC---CceeEEEECccccCCcccCccee
Confidence 4677889999999999999999999863 2379999999999999999999877 68999999999775556789999
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
|++...++++|+. +...|||||++++..
T Consensus 149 Iiv~~a~~~ip~~------l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 149 IIVTAGAPKIPEP------LIEQLKIGGKLIIPV 176 (215)
T ss_dssp EEECSBBSSCCHH------HHHTEEEEEEEEEEE
T ss_pred EEeecccccCCHH------HHHhcCCCCEEEEEE
Confidence 9999999987543 556799999998854
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=4.7e-13 Score=118.65 Aligned_cols=106 Identities=20% Similarity=0.312 Sum_probs=86.4
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEE
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 237 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~ 237 (328)
...++++|||||||+|.++..+++.|. .+|+|+|.|+.+.. +++.....+. ..++.++.+|+.+++++..+||+|+
T Consensus 32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~-a~~~~~~~~~--~~~i~~~~~~~~~l~~~~~~~D~Iv 107 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQ-AMDIIRLNKL--EDTITLIKGKIEEVHLPVEKVDVII 107 (311)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHH-HHHHHHHTTC--TTTEEEEESCTTTSCCSCSCEEEEE
T ss_pred ccCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHH-HHHHHHHhCC--CccceEEEeeHHHhcCccccceEEE
Confidence 345688999999999999999999874 48999999998765 5555555553 6789999999999998889999999
Q ss_pred eccccccCC---ChHHHHHHHHhcccCCcEEEE
Q 020307 238 AGAALHCWP---SPSNAVAEISRILRSGGVFVG 267 (328)
Q Consensus 238 ~~~vl~h~~---d~~~~l~~~~r~LkpgG~l~i 267 (328)
+....++.. .+..++....++|||||+++-
T Consensus 108 se~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 108 SEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp ECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 976666553 245777888899999999874
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.41 E-value=2.2e-12 Score=111.03 Aligned_cols=129 Identities=15% Similarity=0.170 Sum_probs=102.8
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
.++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.++++++.+++ ..++.++++|+..++ ..+.||.|++.
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~l--~~~v~~~~~D~~~~~-~~~~~D~Ii~~ 181 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKV--EDRMSAYNMDNRDFP-GENIADRILMG 181 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTC--TTTEEEECSCTTTCC-CCSCEEEEEEC
T ss_pred CCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhCC--CceEEEEEcchHHhc-cCCCCCEEEEC
Confidence 478999999999999999999886 45899999999999999999998875 567999999998876 35789999875
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNY 312 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v 312 (328)
. .+....++.++.++|||||++.+...... ........+.+.++.+..|+++.
T Consensus 182 ~----p~~~~~~l~~a~~~l~~gG~lh~~~~~~~----------------~~~~~~~~e~~~~~~~~~g~~v~ 234 (260)
T d2frna1 182 Y----VVRTHEFIPKALSIAKDGAIIHYHNTVPE----------------KLMPREPFETFKRITKEYGYDVE 234 (260)
T ss_dssp C----CSSGGGGHHHHHHHEEEEEEEEEEEEEEG----------------GGTTTTTHHHHHHHHHHTTCEEE
T ss_pred C----CCchHHHHHHHHhhcCCCCEEEEEecccc----------------ccchhhHHHHHHHHHHHcCCceE
Confidence 3 23456778899999999999877554322 11122345678888999999764
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.37 E-value=1.1e-12 Score=110.34 Aligned_cols=106 Identities=23% Similarity=0.334 Sum_probs=85.0
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHhC------CCceEEEEeCCHHHHHHHHHHHHhcCc--CCCCCeEEEEecCCCCCCC
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKSG------TYSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRADVCRLPFA 229 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~~------~~~~v~g~D~s~~~~~~a~~~~~~~~~--~~~~~i~~~~~d~~~lp~~ 229 (328)
...++.+|||||||+|+++..+++.. +..+|+++|+++++++.|++++...+. ....++.+..+|......+
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~ 156 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP 156 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc
Confidence 45688999999999999998887751 234899999999999999887654211 0145899999999776556
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.++||.|++..+++++++ .+.+.|||||++++..
T Consensus 157 ~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 157 NAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVPV 190 (223)
T ss_dssp GCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred ccceeeEEEEeechhchH------HHHHhcCCCcEEEEEE
Confidence 789999999999998764 4678999999998855
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.32 E-value=8.7e-13 Score=119.82 Aligned_cols=115 Identities=9% Similarity=0.047 Sum_probs=83.8
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCc------CCCCCeEE-EEecCCCCC
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT------ILTSNLAL-VRADVCRLP 227 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~------~~~~~i~~-~~~d~~~lp 227 (328)
+.+...++.+|||||||+|..+..++...+..+++|+|+|+.+++.|+++....+. .......+ ..+++...+
T Consensus 210 ~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~ 289 (406)
T d1u2za_ 210 QQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNN 289 (406)
T ss_dssp HHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCH
T ss_pred HHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcc
Confidence 44567889999999999999999999886556899999999999999988764210 00122333 334444332
Q ss_pred CC---CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 228 FA---SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 228 ~~---~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.. -..+|+|++.. +.|.++....|+++.++|||||++++...
T Consensus 290 ~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 290 RVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp HHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred ccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEecc
Confidence 11 12467777654 56777888999999999999999988664
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.31 E-value=2.5e-12 Score=105.46 Aligned_cols=114 Identities=17% Similarity=0.276 Sum_probs=93.7
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA 229 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~ 229 (328)
+++...++..+||++||+|..+..+.+..++.+|+|+|.++.+++.|++++... ..++.++.+++.++. +.
T Consensus 17 ~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~----~~r~~~~~~~f~~~~~~~~~~~ 92 (192)
T d1m6ya2 17 EFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF----SDRVSLFKVSYREADFLLKTLG 92 (192)
T ss_dssp HHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG----TTTEEEEECCGGGHHHHHHHTT
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc----cccccchhHHHhhHHHHHHHcC
Confidence 456778899999999999999999999988889999999999999999998764 458999999987653 34
Q ss_pred CCccceEEecccc--c-------cCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 230 SGFVDAVHAGAAL--H-------CWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 230 ~~~fD~i~~~~vl--~-------h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
.++||.|+....+ . .+......|..+.++|+|||++++.++..
T Consensus 93 ~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s 144 (192)
T d1m6ya2 93 IEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS 144 (192)
T ss_dssp CSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred CCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence 5789999876544 1 12223578999999999999999988543
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.29 E-value=1.8e-12 Score=114.87 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=85.2
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC----CCCCCCccc
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGFVD 234 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~fD 234 (328)
..++.+|||++||+|.++..++..+. +|+++|+|+.+++.|+++++.++ ..++.++++|..+ ++...++||
T Consensus 143 ~~~g~rVLDl~~gtG~~s~~~a~g~~--~V~~vD~s~~al~~a~~n~~~ng---l~~~~~i~~d~~~~~~~~~~~~~~fD 217 (318)
T d1wxxa2 143 RFRGERALDVFSYAGGFALHLALGFR--EVVAVDSSAEALRRAEENARLNG---LGNVRVLEANAFDLLRRLEKEGERFD 217 (318)
T ss_dssp GCCEEEEEEETCTTTHHHHHHHHHEE--EEEEEESCHHHHHHHHHHHHHTT---CTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred HhCCCeeeccCCCCcHHHHHHHhcCC--cEEeecchHHHHHHHHHHHHHcC---CCCcceeeccHHHHhhhhHhhhcCCC
Confidence 34688999999999999999887554 89999999999999999999887 4679999999755 334467899
Q ss_pred eEEecccccc---------CCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 235 AVHAGAALHC---------WPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 235 ~i~~~~vl~h---------~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+|++.---.. ..+...+++.+.++|||||.|++.+.+
T Consensus 218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9998532111 111235788899999999999987754
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.25 E-value=1e-11 Score=110.35 Aligned_cols=110 Identities=16% Similarity=0.187 Sum_probs=87.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC----CCCCCCccce
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGFVDA 235 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~fD~ 235 (328)
.++.+|||++||+|.++..++..+. .+|+++|+|+.+++.+++++..+++ ..++.++++|+.+ ++....+||+
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl--~~~~~~~~~d~~~~~~~~~~~~~~fD~ 220 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGV--EDRMKFIVGSAFEEMEKLQKKGEKFDI 220 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCC--CccceeeechhhhhhHHHHhccCCCCc
Confidence 4688999999999999999998864 4899999999999999999998875 4688999999754 2335678999
Q ss_pred EEeccccccC---------CChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 236 VHAGAALHCW---------PSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 236 i~~~~vl~h~---------~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
|++.---.-- .+-..++..+.++|||||+|++++...
T Consensus 221 Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 221 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred hhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 9985321110 012357888899999999999988543
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.18 E-value=3.4e-11 Score=95.05 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=82.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCCCCCccceEEec
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~i~~~ 239 (328)
++.+|||+|||+|.++..++.++. .+|+++|.++.+++.+++++...+. ..++.++++|+.. ++...++||+|++.
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~--~~~~~ii~~D~~~~l~~~~~~fDiIf~D 90 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKA--ENRFTLLKMEAERAIDCLTGRFDLVFLD 90 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTC--GGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhccc--ccchhhhcccccccccccccccceeEec
Confidence 688999999999999999888875 4999999999999999999988764 5679999999865 34456789999974
Q ss_pred cccccCCChHHHHHHHH--hcccCCcEEEEEEec
Q 020307 240 AALHCWPSPSNAVAEIS--RILRSGGVFVGTTFL 271 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~--r~LkpgG~l~i~~~~ 271 (328)
--.. -..-...+..+. ++|+|||.+++....
T Consensus 91 PPy~-~~~~~~~l~~i~~~~~L~~~g~iiiE~~~ 123 (152)
T d2esra1 91 PPYA-KETIVATIEALAAKNLLSEQVMVVCETDK 123 (152)
T ss_dssp CSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred hhhc-cchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence 2110 001134455553 579999999987643
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=1.7e-09 Score=92.12 Aligned_cols=82 Identities=10% Similarity=0.043 Sum_probs=66.7
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC------CCCCCcc
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFASGFV 233 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l------p~~~~~f 233 (328)
.+..++||+|||+|.....|+...++.+++|+|+|+.+++.|+++++..++ ..++.++..+.... ...+++|
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l--~~~~~~~~~~~~~~~~~~~~~~~~~~f 137 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL--SDLIKVVKVPQKTLLMDALKEESEIIY 137 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCC--CcceeeeeeccHHhhhhhhhhcccCce
Confidence 345699999999999999999987788999999999999999999998876 67788887654332 1235689
Q ss_pred ceEEeccccc
Q 020307 234 DAVHAGAALH 243 (328)
Q Consensus 234 D~i~~~~vl~ 243 (328)
|+|+|+=-..
T Consensus 138 D~ivsNPPY~ 147 (250)
T d2h00a1 138 DFCMCNPPFF 147 (250)
T ss_dssp SEEEECCCCC
T ss_pred eEEEecCccc
Confidence 9999985433
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.11 E-value=1.9e-10 Score=94.38 Aligned_cols=109 Identities=12% Similarity=0.134 Sum_probs=75.0
Q ss_pred cCCCeEEEEcCCcCHH----HHHHHHh----CCCceEEEEeCCHHHHHHHHHHH------------------HhcCcC--
Q 020307 160 AQGGLLVDVSCGSGLF----SRKFAKS----GTYSGVVALDFSENMLRQCYDFI------------------KQDNTI-- 211 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~----~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~------------------~~~~~~-- 211 (328)
.+.-+||++|||+|.- +..+.+. ....+++|+|+|+.+++.|++-. ...+..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 3456999999999983 3333332 22357999999999999997321 110000
Q ss_pred --------CCCCeEEEEecCCCC-CCCCCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEE
Q 020307 212 --------LTSNLALVRADVCRL-PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGT 268 (328)
Q Consensus 212 --------~~~~i~~~~~d~~~l-p~~~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~ 268 (328)
....+.+...+.... +...+.||+|+|.+||.++.++ .++++.+.+.|+|||+|++-
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 011234455554332 2345789999999999999877 58899999999999998873
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.10 E-value=1.6e-10 Score=100.81 Aligned_cols=109 Identities=11% Similarity=-0.002 Sum_probs=82.9
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC----CCCCCccce
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVDA 235 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD~ 235 (328)
.++.+|||+.||+|.++..++..+. +|++||.|+.+++.|++++..+++. ..++.++++|+.+. .....+||+
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~GA--~V~~VD~s~~al~~a~~N~~ln~~~-~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLE-QAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCT-TSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred cCCCeEEEecCCCcHHHHHHHhCCC--eEEEEeChHHHHHHHHHhhhhhccc-CCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 4678999999999999999998875 8999999999999999999877642 34699999998543 123578999
Q ss_pred EEec---ccc------ccC-CChHHHHHHHHhcccCCcEEEEEEec
Q 020307 236 VHAG---AAL------HCW-PSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 236 i~~~---~vl------~h~-~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
|++. +.. ..+ .+...+++.+.++|+|||.+++.+.+
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 9984 111 111 11235667788899999987777643
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.10 E-value=1e-10 Score=103.25 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=84.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC----CCCCCccce
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVDA 235 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD~ 235 (328)
.++.+|||+.||+|.++..++..+. .+|+++|+|+.+++.++++++.+++. ..++.++++|+.+. .....+||+
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~ga-~~V~~vD~s~~a~~~a~~N~~~n~l~-~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEANHLD-MANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHTTCC-CTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hCCCceeecCCCCcHHHHHHHhCCC-ceEEEecCCHHHHHHHHHHHHHhccc-CcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 4688999999999999998887653 47999999999999999999887652 35799999998542 223568999
Q ss_pred EEeccc-----cccC----CChHHHHHHHHhcccCCcEEEEEEec
Q 020307 236 VHAGAA-----LHCW----PSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 236 i~~~~v-----l~h~----~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
|++.-- =... .+...+++.+.++|+|||+|++++..
T Consensus 221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 997411 0111 12346788899999999999998754
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.05 E-value=2.5e-10 Score=93.44 Aligned_cols=68 Identities=19% Similarity=0.295 Sum_probs=59.4
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
..|++|||+|||+|.++..++..++ .+|+|+|+++.+++.|+++ ..++.++++|+.+++ ++||+|+++
T Consensus 47 l~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N--------~~~~~~~~~D~~~l~---~~fD~Vi~N 114 (197)
T d1ne2a_ 47 IGGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRN--------CGGVNFMVADVSEIS---GKYDTWIMN 114 (197)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHH--------CTTSEEEECCGGGCC---CCEEEEEEC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHc--------cccccEEEEehhhcC---CcceEEEeC
Confidence 4688999999999999988888874 4799999999999999986 567899999998764 689999986
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.05 E-value=1.1e-10 Score=97.21 Aligned_cols=110 Identities=12% Similarity=0.210 Sum_probs=84.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C-----CC
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-----FA 229 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-----~~ 229 (328)
+...+.++|||+|||+|..+..+++.. ++.+++++|+++.+.+.|++++...++ ..++.++.+|..+. + +.
T Consensus 52 v~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl--~~~i~l~~Gd~~e~l~~l~~~~~ 129 (214)
T d2cl5a1 52 IREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL--QDKVTILNGASQDLIPQLKKKYD 129 (214)
T ss_dssp HHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESCHHHHGGGHHHHSC
T ss_pred HHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC--Cccceeeeccccccccchhhccc
Confidence 445567899999999999999999874 357999999999999999999988875 56799999997542 2 34
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.++||+|+..+.-.. ......+.+..++|||||++++-+
T Consensus 130 ~~~~D~ifiD~~~~~-~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 130 VDTLDMVFLDHWKDR-YLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp CCCEEEEEECSCGGG-HHHHHHHHHHTTCEEEEEEEEESC
T ss_pred ccccceeeecccccc-cccHHHHHHHhCccCCCcEEEEeC
Confidence 568999997642111 012234777889999999877643
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.04 E-value=7.8e-10 Score=94.94 Aligned_cols=108 Identities=15% Similarity=0.127 Sum_probs=79.6
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-CCCCCccceEE
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVH 237 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~i~ 237 (328)
..+..++||+|||+|..+..+++. ++.+|+++|+|+.+++.|+++++..+. ..++.+..+|+.+. +...++||+|+
T Consensus 108 ~~~~~~vld~g~GsG~i~~~la~~-~~~~v~a~Dis~~Al~~A~~Na~~~~~--~~~~~i~~~~~~~~~~~~~~~fDlIV 184 (271)
T d1nv8a_ 108 KYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGV--SDRFFVRKGEFLEPFKEKFASIEMIL 184 (271)
T ss_dssp HHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTC--TTSEEEEESSTTGGGGGGTTTCCEEE
T ss_pred cccccEEEEeeeeeehhhhhhhhc-ccceeeechhhhhHHHHHHHHHHHcCC--CceeEEeecccccccccccCcccEEE
Confidence 345568999999999999888865 678999999999999999999998775 56788888888653 33347899999
Q ss_pred eccc-------ccc--CCChH----------HHHHH-HHhcccCCcEEEEEE
Q 020307 238 AGAA-------LHC--WPSPS----------NAVAE-ISRILRSGGVFVGTT 269 (328)
Q Consensus 238 ~~~v-------l~h--~~d~~----------~~l~~-~~r~LkpgG~l~i~~ 269 (328)
++=- +.. .-+|. .++++ +.+.|+|||++++..
T Consensus 185 sNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei 236 (271)
T d1nv8a_ 185 SNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 236 (271)
T ss_dssp ECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred EcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE
Confidence 9710 110 01232 22222 557899999888855
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.03 E-value=1.8e-10 Score=92.60 Aligned_cols=105 Identities=14% Similarity=0.205 Sum_probs=74.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCC--CCCCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RLPFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~--~lp~~~~~fD~i~ 237 (328)
.++.+|||+|||+|.++..++.++. +++++|.|+.+++.++++++..+. ..++....+|.. .......+||+|+
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~ga--~vv~vD~~~~a~~~~~~N~~~~~~--~~~v~~~~~d~~~~~~~~~~~~fD~If 115 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAF 115 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEeccccchhhhhhhhccc--hhhhcccCHHHHhhhhHHHHhhcc--ccceeeeehhcccccccccCCccceeE
Confidence 4678999999999999999988876 899999999999999999988764 334444444431 1223457899999
Q ss_pred eccccccCCChHHHHHHH--HhcccCCcEEEEEEe
Q 020307 238 AGAALHCWPSPSNAVAEI--SRILRSGGVFVGTTF 270 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~--~r~LkpgG~l~i~~~ 270 (328)
+.=-. +. +....+.++ ..+|+|||++++..+
T Consensus 116 ~DPPY-~~-~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 116 MAPPY-AM-DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp ECCCT-TS-CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred Ecccc-cc-CHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 85221 11 222334443 357999999888664
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=8.8e-10 Score=91.88 Aligned_cols=110 Identities=16% Similarity=0.114 Sum_probs=89.1
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CC-----CC
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-----FA 229 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-----~~ 229 (328)
....+.++|||||||+|+.+..+++..+ +++++.+|.+++..+.|++.+...+. ..++.++.+|+.+ ++ ..
T Consensus 55 ~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~--~~~i~~~~Gda~e~l~~~~~~~~ 132 (219)
T d2avda1 55 ARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA--EHKIDLRLKPALETLDELLAAGE 132 (219)
T ss_dssp HHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHHHHHHTTC
T ss_pred HHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc--cceEEEEEeehhhcchhhhhhcc
Confidence 3455778999999999999999998743 67999999999999999999998886 6789999999744 22 23
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
.++||+|+..+-= .+-...+..+.++|+|||++++-...
T Consensus 133 ~~~fD~ifiD~dk---~~y~~~~~~~~~lL~~GGvii~Dn~l 171 (219)
T d2avda1 133 AGTFDVAVVDADK---ENCSAYYERCLQLLRPGGILAVLRVL 171 (219)
T ss_dssp TTCEEEEEECSCS---TTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred cCCccEEEEeCCH---HHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 5789999975421 23457788999999999999996643
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.94 E-value=1.9e-09 Score=88.70 Aligned_cols=75 Identities=16% Similarity=0.290 Sum_probs=63.2
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
...|.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.+++++... ..+..++.+|...+ +++||+|++
T Consensus 44 dl~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~----~~~~~~~~~d~~~~---~~~fD~Vi~ 115 (201)
T d1wy7a1 44 DIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEF----KGKFKVFIGDVSEF---NSRVDIVIM 115 (201)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGG----TTSEEEEESCGGGC---CCCCSEEEE
T ss_pred CCCCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHc----CCCceEEECchhhh---CCcCcEEEE
Confidence 34688999999999999998888764 48999999999999999998775 45788999998775 467999998
Q ss_pred ccc
Q 020307 239 GAA 241 (328)
Q Consensus 239 ~~v 241 (328)
+--
T Consensus 116 nPP 118 (201)
T d1wy7a1 116 NPP 118 (201)
T ss_dssp CCC
T ss_pred cCc
Confidence 644
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.89 E-value=1e-08 Score=89.80 Aligned_cols=112 Identities=17% Similarity=0.092 Sum_probs=85.3
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc--CcCCCCCeEEEEecCCCC-CCCCCccce
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-PFASGFVDA 235 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~l-p~~~~~fD~ 235 (328)
....++||.||.|.|..+..+.+..+..+++++|+++.+++.|++.+... +....+++.++.+|+.+. .-.+++||+
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 34568999999999999999998876779999999999999999987431 212267899999998542 223568999
Q ss_pred EEecccccc-CCCh------HHHHHHHHhcccCCcEEEEEEe
Q 020307 236 VHAGAALHC-WPSP------SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 236 i~~~~vl~h-~~d~------~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
|++...=.+ ...+ ..+++.+.+.|+|||++++...
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~ 196 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence 996432111 1111 4789999999999999988653
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.81 E-value=1.2e-08 Score=82.51 Aligned_cols=106 Identities=9% Similarity=0.094 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-CCCCCccceEEec
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~i~~~ 239 (328)
.+.+|||++||+|.++..++.+|. ..|+.+|.++.+++.+++++...+ ..+..++..|+... .....+||+|++.
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~~---~~~~~ii~~d~~~~l~~~~~~fDlIf~D 118 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLK---AGNARVVNSNAMSFLAQKGTPHNIVFVD 118 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTT---CCSEEEECSCHHHHHSSCCCCEEEEEEC
T ss_pred chhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhcc---ccceeeeeecccccccccccccCEEEEc
Confidence 577999999999999999999885 489999999999999999998765 56788899887542 3346789999986
Q ss_pred cccccCCChHHHHHHHHh--cccCCcEEEEEEec
Q 020307 240 AALHCWPSPSNAVAEISR--ILRSGGVFVGTTFL 271 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r--~LkpgG~l~i~~~~ 271 (328)
--.. .......+..+.+ +|+++|++++....
T Consensus 119 PPY~-~~~~~~~l~~l~~~~~L~~~~iIiiE~~~ 151 (183)
T d2fpoa1 119 PPFR-RGLLEETINLLEDNGWLADEALIYVESEV 151 (183)
T ss_dssp CSSS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred Cccc-cchHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 4321 1233566666654 69999999987643
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.79 E-value=8.2e-09 Score=86.23 Aligned_cols=109 Identities=14% Similarity=0.105 Sum_probs=88.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CC------C
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP------F 228 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp------~ 228 (328)
+...+.++|||||+++|+.+..+++..+ +++++.+|.+++..+.|++.+...+. ..++.++.+++.+ ++ .
T Consensus 55 ~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~--~~~i~~~~g~a~~~L~~l~~~~~ 132 (227)
T d1susa1 55 LKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV--DHKIDFREGPALPVLDEMIKDEK 132 (227)
T ss_dssp HHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHCGG
T ss_pred HHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc--ccceeeeehHHHHHHHHHHhccc
Confidence 3445778999999999999999998743 67999999999999999999998876 6689999999843 22 1
Q ss_pred CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 229 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
..++||+|+...- + .+-...++.+.++|+|||++++-..
T Consensus 133 ~~~~fD~iFiDa~--k-~~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 133 NHGSYDFIFVDAD--K-DNYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp GTTCBSEEEECSC--S-TTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred cCCceeEEEeccc--h-hhhHHHHHHHHhhcCCCcEEEEccC
Confidence 2568999998642 1 3446788999999999999998654
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=5.4e-08 Score=79.86 Aligned_cols=103 Identities=20% Similarity=0.183 Sum_probs=88.9
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEe
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 238 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~ 238 (328)
..++.+|+|+|+|.|.-+.-++-..|+.+++.+|.+..-+...+......+ ..++.++...++++. .+.+||+|++
T Consensus 63 ~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~---L~nv~v~~~R~E~~~-~~~~fD~V~s 138 (207)
T d1jsxa_ 63 YLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK---LENIEPVQSRVEEFP-SEPPFDGVIS 138 (207)
T ss_dssp GCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT---CSSEEEEECCTTTSC-CCSCEEEEEC
T ss_pred hhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcC---Ccceeeeccchhhhc-cccccceehh
Confidence 335679999999999999999988898999999999999999988887766 568999999998875 3568999998
Q ss_pred ccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 239 GAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 239 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
..+ .+...++.-+...++++|.+++.-
T Consensus 139 RA~----~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 139 RAF----ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp SCS----SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred hhh----cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 775 567888999999999999999866
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.75 E-value=3.2e-08 Score=85.17 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=82.9
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCc-------CCCCCeEEEEecCCCCCCCCC
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-------ILTSNLALVRADVCRLPFASG 231 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-------~~~~~i~~~~~d~~~lp~~~~ 231 (328)
..+..+||.+|+|.|..+..+.+.. ..+++.+|+++.+++.|++.+...+. ...+++.++.+|+...--.++
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 148 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSC-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred CCCCceEEEecCCchHHHHHHHHhC-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence 3567899999999999999988764 46899999999999999987643210 015789999999854322357
Q ss_pred ccceEEeccccccCCCh-----HHHHHHHHhcccCCcEEEEEEec
Q 020307 232 FVDAVHAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~-----~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+||+|++... .....+ ..+++.+.+.|+|||++++...+
T Consensus 149 ~yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s 192 (276)
T d1mjfa_ 149 GFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 192 (276)
T ss_dssp CEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence 8999997543 222222 47899999999999999886643
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.74 E-value=1.7e-08 Score=81.54 Aligned_cols=107 Identities=16% Similarity=0.163 Sum_probs=82.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC----CCCCCccce
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVDA 235 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD~ 235 (328)
..+.+|||+.||+|.++..++.+|. ..|+.+|.++.+++.+++++...+. ..++.++++|+.+. .....+||+
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~~--~~~~~i~~~D~~~~l~~~~~~~~~fDl 116 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITKE--PEKFEVRKMDANRALEQFYEEKLQFDL 116 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred cCCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhhc--ccccccccccchhhhhhhcccCCCcce
Confidence 3688999999999999999999984 4799999999999999999987653 45799999997542 123568999
Q ss_pred EEeccccccCCChHHHHHHHHh--cccCCcEEEEEEe
Q 020307 236 VHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTF 270 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r--~LkpgG~l~i~~~ 270 (328)
|++.=-. +..+....+..+.. +|+++|++++...
T Consensus 117 IflDPPY-~~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 117 VLLDPPY-AKQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp EEECCCG-GGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred EEechhh-hhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 9975321 12234566777754 6999999887654
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.73 E-value=7.4e-08 Score=82.65 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=85.4
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEEecCCC-CCCCCCccceE
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCR-LPFASGFVDAV 236 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~~~-lp~~~~~fD~i 236 (328)
..+.++||-||.|.|..++.+.+..+..+++.+|+++++++.|++.+... +....+++.++.+|... +.-.+++||+|
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 34568999999999999999998766679999999999999999987431 11126799999999744 22335789999
Q ss_pred EeccccccCCC-----hHHHHHHHHhcccCCcEEEEEEe
Q 020307 237 HAGAALHCWPS-----PSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 237 ~~~~vl~h~~d-----~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+.... ..... -..+++.+.+.|+|||+++....
T Consensus 153 i~D~~-~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 153 MVDST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp EESCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred EEcCC-CCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 97643 11111 24789999999999999998653
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.72 E-value=2.1e-08 Score=84.28 Aligned_cols=74 Identities=11% Similarity=0.279 Sum_probs=62.4
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++.+|||||||+|.++..|++.+. +|+++|+++.+++.+++++.. .+++.++.+|+.+++++......|
T Consensus 17 ~~~~~~d~VlEIGpG~G~LT~~Ll~~~~--~v~avE~D~~l~~~l~~~~~~-----~~n~~i~~~D~l~~~~~~~~~~~v 89 (235)
T d1qama_ 17 IRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQFKFPKNQSYKI 89 (235)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGGCCCCSSCCCEE
T ss_pred cCCCCCCeEEEECCCchHHHHHHHhCcC--ceEEEeeccchHHHHHHHhhc-----ccchhhhhhhhhhcccccccccee
Confidence 5566899999999999999999999876 999999999999999988765 679999999998887655443344
Q ss_pred E
Q 020307 237 H 237 (328)
Q Consensus 237 ~ 237 (328)
+
T Consensus 90 v 90 (235)
T d1qama_ 90 F 90 (235)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.71 E-value=5.5e-08 Score=84.12 Aligned_cols=111 Identities=13% Similarity=0.084 Sum_probs=83.8
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEEecCCCC-CCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRL-PFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~~~l-p~~~~~fD~i~ 237 (328)
+..++||-||.|.|..++.+.+..+..+++++|+++.+++.+++.+... +....+++.++.+|.... .-.+++||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 4568999999999999999998876678999999999999999877532 111267999999997442 22356899999
Q ss_pred eccccccC-C----ChHHHHHHHHhcccCCcEEEEEEe
Q 020307 238 AGAALHCW-P----SPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 238 ~~~vl~h~-~----d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+...-... + --..+++.+.+.|+|||++++...
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 75331111 1 125789999999999999988654
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.69 E-value=3.6e-07 Score=81.53 Aligned_cols=133 Identities=16% Similarity=0.213 Sum_probs=93.6
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC----CCCCC
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASG 231 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~ 231 (328)
++...++.+|||+-||.|.++..|++.+. +|+|+|.++.+++.|+++++.++ ..++.|+.+|.+.. +....
T Consensus 207 ~~~~~~~~~vlDLycG~G~fsl~La~~~~--~V~gvE~~~~ai~~A~~na~~n~---i~n~~~~~~~~~~~~~~~~~~~~ 281 (358)
T d1uwva2 207 WLDVQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLNG---LQNVTFYHENLEEDVTKQPWAKN 281 (358)
T ss_dssp HHTCCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCTTSCCSSSGGGTT
T ss_pred hhccCCCceEEEecccccccchhcccccc--EEEeccCcHHHHHHHHHhHHhcc---cccceeeecchhhhhhhhhhhhc
Confidence 35556788999999999999999999876 99999999999999999998877 67999999998653 22346
Q ss_pred ccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeE
Q 020307 232 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 311 (328)
Q Consensus 232 ~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~ 311 (328)
.+|+|+..=-=. -..+.++.+.+ ++|.-+++++..- . . + ..|+.. |.+.||++
T Consensus 282 ~~d~vilDPPR~---G~~~~~~~l~~-~~~~~ivYVSCnp-------~--T-l------------aRDl~~-l~~~gy~l 334 (358)
T d1uwva2 282 GFDKVLLDPARA---GAAGVMQQIIK-LEPIRIVYVSCNP-------A--T-L------------ARDSEA-LLKAGYTI 334 (358)
T ss_dssp CCSEEEECCCTT---CCHHHHHHHHH-HCCSEEEEEESCH-------H--H-H------------HHHHHH-HHHTTCEE
T ss_pred cCceEEeCCCCc---cHHHHHHHHHH-cCCCEEEEEeCCH-------H--H-H------------HHHHHH-HHHCCCeE
Confidence 789998731000 00245666665 3677677775421 0 0 0 124433 55689998
Q ss_pred EEEEEeCcE
Q 020307 312 YTSKVQQSF 320 (328)
Q Consensus 312 v~~~~~~~~ 320 (328)
.+....+-|
T Consensus 335 ~~i~~~D~F 343 (358)
T d1uwva2 335 ARLAMLDMF 343 (358)
T ss_dssp EEEEEECCS
T ss_pred eEEEEEecC
Confidence 887665544
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=1e-07 Score=82.13 Aligned_cols=112 Identities=14% Similarity=0.144 Sum_probs=84.2
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEEecCCCC-CCCCCccceE
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRL-PFASGFVDAV 236 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~~~l-p~~~~~fD~i 236 (328)
....++||-||.|.|..++.+.+..+..+++.+|+++++++.|++.+... +....+++.++.+|.... .-..++||+|
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 155 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence 34568999999999999999998866679999999999999999987431 111268999999997432 2235689999
Q ss_pred EeccccccCCCh-----HHHHHHHHhcccCCcEEEEEEec
Q 020307 237 HAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 237 ~~~~vl~h~~d~-----~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++... .-...+ ..+++.+.+.|+|||++++....
T Consensus 156 i~D~~-~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 156 ITDSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp EEECC------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEcCC-CCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 97532 111111 26799999999999999987644
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.65 E-value=3.2e-08 Score=79.64 Aligned_cols=108 Identities=20% Similarity=0.350 Sum_probs=84.9
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CC
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA 229 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~ 229 (328)
+++...+++.++|..+|.|..+..+.+... +|+|+|.++.+++.+++.. ..++.++.+++.++. ..
T Consensus 12 ~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~--~viaiD~D~~ai~~a~~~~-------~~~~~~~~~~f~~~~~~l~~~~ 82 (182)
T d1wg8a2 12 DLLAVRPGGVYVDATLGGAGHARGILERGG--RVIGLDQDPEAVARAKGLH-------LPGLTVVQGNFRHLKRHLAALG 82 (182)
T ss_dssp HHHTCCTTCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHTC-------CTTEEEEESCGGGHHHHHHHTT
T ss_pred HhcCCCCCCEEEEeCCCCcHHHHHHhcccC--cEEEEhhhhhHHHHHhhcc-------ccceeEeehHHHHHHHHHHHcC
Confidence 346678899999999999999999998754 9999999999999988642 568999999886653 33
Q ss_pred CCccceEEecccc--ccCCCh-------HHHHHHHHhcccCCcEEEEEEec
Q 020307 230 SGFVDAVHAGAAL--HCWPSP-------SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 230 ~~~fD~i~~~~vl--~h~~d~-------~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
.+.+|.|++...+ .++.++ ...|......|+|||++++.++.
T Consensus 83 ~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh 133 (182)
T d1wg8a2 83 VERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH 133 (182)
T ss_dssp CSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred CCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence 4679999986543 222333 34688889999999999998854
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.63 E-value=7.8e-08 Score=84.93 Aligned_cols=110 Identities=12% Similarity=0.109 Sum_probs=81.7
Q ss_pred cccCCCeEEEEcCCcCHHHHHHHHh-----CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCc
Q 020307 158 KSAQGGLLVDVSCGSGLFSRKFAKS-----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 232 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~ 232 (328)
...++.+|||.+||+|.++..+.+. ....+++|+|+++.+++.|+.+.... .....+..+|..... ...+
T Consensus 114 ~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~-~~~~ 188 (328)
T d2f8la1 114 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ----RQKMTLLHQDGLANL-LVDP 188 (328)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH----TCCCEEEESCTTSCC-CCCC
T ss_pred CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh----hhhhhhhcccccccc-cccc
Confidence 4456779999999999999888653 23447999999999999998887765 345667777765432 4578
Q ss_pred cceEEeccccccCCC------------------hHHHHHHHHhcccCCcEEEEEEecc
Q 020307 233 VDAVHAGAALHCWPS------------------PSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 233 fD~i~~~~vl~h~~d------------------~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
||+|+++--...... ...++..+.+.|+|||++++..|..
T Consensus 189 fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~ 246 (328)
T d2f8la1 189 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 246 (328)
T ss_dssp EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred ccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence 999999843321111 1246899999999999999988764
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.60 E-value=1.2e-07 Score=82.42 Aligned_cols=111 Identities=12% Similarity=0.111 Sum_probs=82.9
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC-cCCCCCeEEEEecCCCC-CCCCCccceE
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL-PFASGFVDAV 236 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~l-p~~~~~fD~i 236 (328)
....++||-||.|.|..++.+.+..+..+++.+|+++.+++.+++.+.... ....+++.++.+|..+. .-..++||+|
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 345679999999999999999988666799999999999999999875321 11257999999997542 2235689999
Q ss_pred EeccccccCCCh-----HHHHHHHHhcccCCcEEEEEEe
Q 020307 237 HAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 237 ~~~~vl~h~~d~-----~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+....-. ...+ ..+++.+.+.|+|||+++....
T Consensus 184 I~D~~dp-~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 184 ITDSSDP-VGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp EECCC--------------HHHHHHHHEEEEEEEEEECC
T ss_pred EEcCCCC-CCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 9754321 1111 3678999999999999998753
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.52 E-value=1.4e-07 Score=81.41 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=84.7
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEEecCCCCC--CCCCccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRLP--FASGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~~~lp--~~~~~fD~i 236 (328)
...++||-||.|.|..++.+.+..+..+++.+|+++++++.+++.+... +....+++.++.+|....- ..+++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 4567999999999999999999866678999999999999999976421 1112689999999964321 235689999
Q ss_pred EeccccccCCCh-----HHHHHHHHhcccCCcEEEEEEec
Q 020307 237 HAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 237 ~~~~vl~h~~d~-----~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+.... .-...+ ..+++.+.+.|+|||++++...+
T Consensus 159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 197 (290)
T d1xj5a_ 159 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 197 (290)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 97533 111111 47899999999999999997643
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.52 E-value=9.2e-07 Score=73.77 Aligned_cols=128 Identities=15% Similarity=0.033 Sum_probs=99.2
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC---CCCccceE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVDAV 236 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD~i 236 (328)
....+|+|||+|.|.=+.-++-..|+.+++.+|.+..-+...+.....-+ ..++.++...++.+.. ..++||+|
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~---L~n~~i~~~R~E~~~~~~~~~~~~D~v 145 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ---LENTTFCHDRAETFGQRKDVRESYDIV 145 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT---CSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhC---CCCcEEEeehhhhccccccccccceEE
Confidence 35679999999999999888888888899999999998888887777766 5688888888766542 23579999
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHHCCCeEEEE
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS 314 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~~ 314 (328)
++..+ .....++.-....+++||.+++.--... .+ ..++.++.+...|++....
T Consensus 146 ~sRAv----a~l~~ll~~~~~~l~~~g~~i~~KG~~~-------~~-------------El~~a~~~~~~~~~~~~~v 199 (239)
T d1xdza_ 146 TARAV----ARLSVLSELCLPLVKKNGLFVALKAASA-------EE-------------ELNAGKKAITTLGGELENI 199 (239)
T ss_dssp EEECC----SCHHHHHHHHGGGEEEEEEEEEEECC-C-------HH-------------HHHHHHHHHHHTTEEEEEE
T ss_pred EEhhh----hCHHHHHHHHhhhcccCCEEEEECCCCh-------HH-------------HHHHHHHHHHHcCCEEEEE
Confidence 99765 5678899999999999999988662110 11 1234566788899987654
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.48 E-value=5e-09 Score=88.60 Aligned_cols=85 Identities=12% Similarity=0.255 Sum_probs=68.7
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
.+...++.+|||||||+|.++..|++.+. +|+++|+++.+++.+++++.. .+++.++.+|+.+++++...++.
T Consensus 24 ~~~~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~~-----~~n~~ii~~D~l~~~~~~~~~~~ 96 (245)
T d1yuba_ 24 QLNLKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQFQFPNKQRYK 96 (245)
T ss_dssp HCCCCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTTTTCCCSSEEE
T ss_pred hcCCCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhhh-----ccchhhhhhhhhccccccceeee
Confidence 35566788999999999999999999976 999999999999888776543 56899999999988887766666
Q ss_pred EEeccccccCCCh
Q 020307 236 VHAGAALHCWPSP 248 (328)
Q Consensus 236 i~~~~vl~h~~d~ 248 (328)
|+.+- -.|+..+
T Consensus 97 vv~NL-PY~Ist~ 108 (245)
T d1yuba_ 97 IVGNI-PYHLSTQ 108 (245)
T ss_dssp EEEEC-CSSSCHH
T ss_pred Eeeee-ehhhhHH
Confidence 66544 3566554
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.47 E-value=7.9e-07 Score=77.64 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=88.8
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 234 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD 234 (328)
.+...++.+|||+.+|.|.=+..++.. .....+++.|+++.-++..++++...+ ..++.+...|...++.....||
T Consensus 111 ~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~---~~~i~~~~~d~~~~~~~~~~fD 187 (313)
T d1ixka_ 111 ALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG---VLNVILFHSSSLHIGELNVEFD 187 (313)
T ss_dssp HHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT---CCSEEEESSCGGGGGGGCCCEE
T ss_pred cccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH---hhcccccccccccccccccccc
Confidence 366778999999999999987777765 335589999999999999999988877 5678888888777766678899
Q ss_pred eEEec------cccccCCCh----------------HHHHHHHHhcccCCcEEEEEEeccC
Q 020307 235 AVHAG------AALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 235 ~i~~~------~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
.|++. +++..-++. .++|....+.|||||+++.+|-...
T Consensus 188 ~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~ 248 (313)
T d1ixka_ 188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 248 (313)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred EEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence 99973 333322221 2578899999999999999886543
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.46 E-value=8.5e-07 Score=71.03 Aligned_cols=98 Identities=20% Similarity=0.257 Sum_probs=75.6
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------CCC
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FAS 230 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~~ 230 (328)
.++.+|||+||+.|.|+..+.+. +....++++|+.+- . ..+++.++.+|+.... ...
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~-----~i~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------D-----PIVGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------C-----CCTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------c-----ccCCceEeecccccchhhhhhhhhccC
Confidence 46889999999999999988875 55568999998651 0 1568899999986632 235
Q ss_pred CccceEEeccccccCCCh-----------HHHHHHHHhcccCCcEEEEEEec
Q 020307 231 GFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~-----------~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+.+|+|++.....-..+. ...+.-+.++||+||.+++-.+.
T Consensus 87 ~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 679999998775544333 24677788999999999998865
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.41 E-value=1.7e-06 Score=69.53 Aligned_cols=108 Identities=13% Similarity=0.150 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCC---CCCCCCCccceEE
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC---RLPFASGFVDAVH 237 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~---~lp~~~~~fD~i~ 237 (328)
.+.+|||+-||+|.++.++..+|. ..|+.+|.+...++..+++++..+.. .....+...|.. .......+||+|+
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l~~~-~~~~~~~~~d~~~~l~~~~~~~~fDlIF 120 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCS-SEQAEVINQSSLDFLKQPQNQPHFDVVF 120 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCC-TTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred ccceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhhccc-ccccccccccccccccccccCCcccEEE
Confidence 577999999999999999999984 58999999999999999998875431 234555655532 2233456799999
Q ss_pred eccccccCCChHHHHHHHHh--cccCCcEEEEEEec
Q 020307 238 AGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFL 271 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r--~LkpgG~l~i~~~~ 271 (328)
+.=-.. .......+..+.. +|+++|++++....
T Consensus 121 lDPPY~-~~~~~~~l~~l~~~~~L~~~~liiiE~~~ 155 (183)
T d2ifta1 121 LDPPFH-FNLAEQAISLLCENNWLKPNALIYVETEK 155 (183)
T ss_dssp ECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred echhHh-hhhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence 853211 1123466666654 79999999997653
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.40 E-value=1.1e-07 Score=79.53 Aligned_cols=105 Identities=13% Similarity=0.101 Sum_probs=71.5
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHH----hCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--- 227 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--- 227 (328)
+++...++.+|||||++.|..+..++. .+...+++|+|+++......... ..++.++.+|..+..
T Consensus 74 eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~--------~~~I~~i~gDs~~~~~~~ 145 (232)
T d2bm8a1 74 DMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD--------MENITLHQGDCSDLTTFE 145 (232)
T ss_dssp HHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG--------CTTEEEEECCSSCSGGGG
T ss_pred HHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhcc--------ccceeeeecccccHHHHH
Confidence 344555678999999999987665543 35677999999987543322211 678999999975533
Q ss_pred -CCCCccceEEeccccccCCChH-HHHHHHHhcccCCcEEEEEEe
Q 020307 228 -FASGFVDAVHAGAALHCWPSPS-NAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 228 -~~~~~fD~i~~~~vl~h~~d~~-~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+....+|.|+.... |..+.. ..+ ++..+|++||++++.+.
T Consensus 146 ~l~~~~~dlIfID~~--H~~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 146 HLREMAHPLIFIDNA--HANTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp GGSSSCSSEEEEESS--CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred HHHhcCCCEEEEcCC--cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 33556888887654 333332 223 46689999999999763
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.40 E-value=4.1e-07 Score=75.22 Aligned_cols=103 Identities=19% Similarity=0.267 Sum_probs=74.9
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccce
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 235 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 235 (328)
+...++.+|||.|||+|.++..+.+. .....++|+|+++..+.. .....+..+|..... ....||+
T Consensus 15 ~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~------------~~~~~~~~~~~~~~~-~~~~fd~ 81 (223)
T d2ih2a1 15 AEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL------------PPWAEGILADFLLWE-PGEAFDL 81 (223)
T ss_dssp CCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC------------CTTEEEEESCGGGCC-CSSCEEE
T ss_pred cCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh------------cccceeeeeehhccc-cccccce
Confidence 45567889999999999999888765 334579999999865432 335577788876554 3568999
Q ss_pred EEeccccccCC---C--------------------------hHHHHHHHHhcccCCcEEEEEEecc
Q 020307 236 VHAGAALHCWP---S--------------------------PSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 236 i~~~~vl~h~~---d--------------------------~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
|+++--..... + ...++....+.|+|||++.+..|..
T Consensus 82 ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~ 147 (223)
T d2ih2a1 82 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 147 (223)
T ss_dssp EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred ecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence 99875532211 0 1245778889999999999988764
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.34 E-value=2.4e-06 Score=73.46 Aligned_cols=115 Identities=18% Similarity=0.226 Sum_probs=87.3
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-CCCCccc
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVD 234 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD 234 (328)
.+...++.+|||+.+|.|.=+..++....+..++++|+++.-++..+++++..+ ..++.....|..... ...+.||
T Consensus 97 ~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g---~~~~~~~~~~~~~~~~~~~~~fd 173 (284)
T d1sqga2 97 WLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG---MKATVKQGDGRYPSQWCGEQQFD 173 (284)
T ss_dssp HHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT---CCCEEEECCTTCTHHHHTTCCEE
T ss_pred ccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccc---ccceeeeccccccchhccccccc
Confidence 366778999999999999999899888767789999999999999999998876 344554444443221 2356799
Q ss_pred eEEec------cccccCCCh----------------HHHHHHHHhcccCCcEEEEEEeccC
Q 020307 235 AVHAG------AALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 235 ~i~~~------~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
.|++. +++..-++. ..+|+.+.+.|||||+++.+|-...
T Consensus 174 ~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 234 (284)
T d1sqga2 174 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 234 (284)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred EEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence 99963 444333332 2578899999999999999996544
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=1.4e-05 Score=68.85 Aligned_cols=126 Identities=13% Similarity=0.057 Sum_probs=86.8
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC---CC
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SG 231 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~ 231 (328)
.+...++.+|||+.+|.|.-+..++.. .....++++|+++.-++..+++++..+ ..++.+...|...++.. .+
T Consensus 89 ~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g---~~~~~~~~~d~~~~~~~~~~~~ 165 (293)
T d2b9ea1 89 LLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG---VSCCELAEEDFLAVSPSDPRYH 165 (293)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCGGGSCTTCGGGT
T ss_pred ccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC---ccceeeeehhhhhhcccccccc
Confidence 356678999999999999988887765 445689999999999999999999887 67899999988765422 25
Q ss_pred ccceEEec------cccccCCCh------------------HHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHH
Q 020307 232 FVDAVHAG------AALHCWPSP------------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR 285 (328)
Q Consensus 232 ~fD~i~~~------~vl~h~~d~------------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 285 (328)
.||.|++. +++..-++. ..+|..+. .|+|||.++.+|-......+..+.+.+.
T Consensus 166 ~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV~~~L 242 (293)
T d2b9ea1 166 EVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRDAL 242 (293)
T ss_dssp TEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHHHHHH
T ss_pred eeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHHHHHH
Confidence 79999974 222221110 12344444 4799999999886655444443333333
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=3.7e-06 Score=71.73 Aligned_cols=77 Identities=18% Similarity=0.291 Sum_probs=62.3
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
+...++..|||||+|.|.++..|++.+. +++++|+++.+++..++.+..... ..++.++.+|+...+++ .++.|
T Consensus 17 ~~~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~~~--~~~~~~i~~D~l~~~~~--~~~~v 90 (278)
T d1zq9a1 17 AALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPV--ASKLQVLVGDVLKTDLP--FFDTC 90 (278)
T ss_dssp TCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTT--GGGEEEEESCTTTSCCC--CCSEE
T ss_pred hCCCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhhcc--ccchhhhHHHHhhhhhh--hhhhh
Confidence 4456788999999999999999999976 999999999999999988765432 46899999999877654 34555
Q ss_pred Eec
Q 020307 237 HAG 239 (328)
Q Consensus 237 ~~~ 239 (328)
+.+
T Consensus 91 V~N 93 (278)
T d1zq9a1 91 VAN 93 (278)
T ss_dssp EEE
T ss_pred hcc
Confidence 543
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.10 E-value=9e-06 Score=73.91 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=83.9
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhCC-------------CceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-------------YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 221 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-------------~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~ 221 (328)
..+.+.++.+|+|..||+|.++..+.+... ...++|+|+++.+...|+-+...++.. .....+...
T Consensus 156 ~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~-~~~~~i~~~ 234 (425)
T d2okca1 156 DCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG-TDRSPIVCE 234 (425)
T ss_dssp HHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC-SSCCSEEEC
T ss_pred eeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc-cccceeecC
Confidence 555666788999999999999988766421 125999999999999999887665531 234566777
Q ss_pred cCCCCCCCCCccceEEeccccccCC----------------Ch-HHHHHHHHhcccCCcEEEEEEec
Q 020307 222 DVCRLPFASGFVDAVHAGAALHCWP----------------SP-SNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 222 d~~~lp~~~~~fD~i~~~~vl~h~~----------------d~-~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
|....+ ....||+|+++=-+..-. +. ..++..+...|++||++.+..|.
T Consensus 235 d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~ 300 (425)
T d2okca1 235 DSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 300 (425)
T ss_dssp CTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred chhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence 775543 456899999873331110 01 35899999999999999998875
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.07 E-value=5.9e-06 Score=73.57 Aligned_cols=107 Identities=15% Similarity=0.121 Sum_probs=81.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcC------------CCCCeEEEEecCCCCC
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI------------LTSNLALVRADVCRLP 227 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~------------~~~~i~~~~~d~~~lp 227 (328)
.++.+|||..||+|..+..++...+..+|+..|+|+..++.++++++.++.. ....+.+...|+..+.
T Consensus 44 ~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 44 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 3577999999999999987777655568999999999999999998875421 0123455556653322
Q ss_pred -CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 228 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 228 -~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.....||+|... -+..|..+|..+.+.++.||.|.++.-
T Consensus 124 ~~~~~~fDvIDiD----PfGs~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 124 AERHRYFHFIDLD----PFGSPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HHSTTCEEEEEEC----CSSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HhhcCcCCcccCC----CCCCcHHHHHHHHHHhccCCEEEEEec
Confidence 124579999864 366789999999999999999998764
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.02 E-value=1.6e-06 Score=73.06 Aligned_cols=65 Identities=9% Similarity=0.228 Sum_probs=55.2
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 228 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 228 (328)
+...++..|||||||.|.++..|++.+. +|+++|+++.+++..+++... .+++.++.+|+..+++
T Consensus 17 ~~~~~~d~vlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 17 INPQKGQAMVEIGPGLAALTEPVGERLD--QLTVIELDRDLAARLQTHPFL-----GPKLTIYQQDAMTFNF 81 (252)
T ss_dssp HCCCTTCCEEEECCTTTTTHHHHHTTCS--CEEEECCCHHHHHHHHTCTTT-----GGGEEEECSCGGGCCH
T ss_pred cCCCCCCEEEEECCCchHHHHHHHccCC--ceEEEEeccchhHHHHHHhhh-----ccchhHHhhhhhhhcc
Confidence 4556788999999999999999999876 999999999999988875433 4689999999987653
|
| >d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trm112p-like superfamily: Trm112p-like family: Trm112p-like domain: Uncharacterized protein Cgl1405/cg1592 species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.94 E-value=1.6e-06 Score=55.37 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=37.2
Q ss_pred cCcccccCCCchhhccCCCCccccccccCceeeCCCCccccCccceeeeeccc
Q 020307 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110 (328)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 110 (328)
.+.++||.|++++...... +.+.|+.|+..|++.+|++.++.+.
T Consensus 8 L~iL~CP~ck~~L~~~~~~---------~~Lvc~~~~~~YPI~dgIPvLL~de 51 (59)
T d2jnya1 8 LEVLACPKDKGPLRYLESE---------QLLVNERLNLAYRIDDGIPVLLIDE 51 (59)
T ss_dssp TCCCBCTTTCCBCEEETTT---------TEEEETTTTEEEEEETTEECCCSSC
T ss_pred HHHhcCCCCCCEeEEeCCC---------CEEEcCccCccccccCCccccCHHH
Confidence 4779999999999765433 5899999999999999999988763
|
| >d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trm112p-like superfamily: Trm112p-like family: Trm112p-like domain: Uncharacterized protein PFL1779 species: Pseudomonas fluorescens [TaxId: 294]
Probab=97.92 E-value=1.9e-06 Score=54.75 Aligned_cols=43 Identities=21% Similarity=0.445 Sum_probs=37.1
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccccCccceeeeeccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 110 (328)
++++||.|++++...... +.+.|..|+..||+.+|++.++...
T Consensus 5 ~iL~CP~ck~~L~~~~~~---------~~Lvc~~~~laYPI~dGIPvlL~~e 47 (59)
T d2pk7a1 5 DILACPICKGPLKLSADK---------TELISKGAGLAYPIRDGIPVMLESE 47 (59)
T ss_dssp GTCCCTTTCCCCEECTTS---------SEEEETTTTEEEEEETTEECCCGGG
T ss_pred hheECCCCCCcceEeCCC---------CEEecCCcCccccccCCccccCHHH
Confidence 679999999999775443 5799999999999999999998764
|
| >d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Trm112p-like superfamily: Trm112p-like family: Trm112p-like domain: Hypothetical protein CV3345 species: Chromobacterium violaceum [TaxId: 536]
Probab=97.84 E-value=2.5e-06 Score=54.30 Aligned_cols=44 Identities=18% Similarity=0.423 Sum_probs=37.3
Q ss_pred cCcccccCCCchhhccCCCCccccccccCceeeCCCCccccCccceeeeeccc
Q 020307 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110 (328)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~ 110 (328)
.++++||.|++++...... +.+.|..|+..|++.+|++.++...
T Consensus 5 L~iL~CP~ck~~L~~~~~~---------~~Lvc~~~~l~YPI~dGIPvlL~~e 48 (59)
T d2hf1a1 5 LEILVCPLCKGPLVFDKSK---------DELICKGDRLAFPIKDGIPMMLESE 48 (59)
T ss_dssp EEECBCTTTCCBCEEETTT---------TEEEETTTTEEEEEETTEECCCGGG
T ss_pred hhhhcCCCCCCeeeEeCCC---------CEEecCCcCccccccCCccccCHHH
Confidence 3679999999999765433 5799999999999999999998764
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.76 E-value=1.6e-05 Score=65.76 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=68.1
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCC-eEEEEe-cCCCCCCCCCccceEE
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN-LALVRA-DVCRLPFASGFVDAVH 237 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~-i~~~~~-d~~~lp~~~~~fD~i~ 237 (328)
.+..+|+|+|||.|.++..++.+.....+.|+++--...+. ...... . ..+ +.+... |+..+ +.+..|+|+
T Consensus 65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~--P~~~~~-~--~~ni~~~~~~~dv~~l--~~~~~D~vl 137 (257)
T d2p41a1 65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE--PIPMST-Y--GWNLVRLQSGVDVFFI--PPERCDTLL 137 (257)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC--CCCCCS-T--TGGGEEEECSCCTTTS--CCCCCSEEE
T ss_pred cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC--Cccccc-c--ccccccchhhhhHHhc--CCCcCCEEE
Confidence 46779999999999999999988655578888884221000 000000 0 111 233322 23333 467899999
Q ss_pred eccccccCCChH-------HHHHHHHhcccCCcEEEEEEeccC
Q 020307 238 AGAALHCWPSPS-------NAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 238 ~~~vl~h~~d~~-------~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
|..+ ++-+++. .+|.-+.+.|+|||-+++-.+..+
T Consensus 138 cDm~-ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py 179 (257)
T d2p41a1 138 CDIG-ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY 179 (257)
T ss_dssp ECCC-CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC
T ss_pred eeCC-CCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCC
Confidence 9876 4455552 567777799999999999887654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.66 E-value=0.0001 Score=57.46 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=77.2
Q ss_pred ccccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CCC
Q 020307 157 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FAS 230 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~ 230 (328)
....++.+||-+|+|. |.++..+++.. +.+|+++|.+++.++.+++. .-..++..+-.+.. ...
T Consensus 23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~---------Ga~~~i~~~~~~~~~~~~~~~~ 92 (166)
T d1llua2 23 TNARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKL---------GASLTVNARQEDPVEAIQRDIG 92 (166)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT---------TCSEEEETTTSCHHHHHHHHHS
T ss_pred hCCCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhcc---------CccccccccchhHHHHHHHhhc
Confidence 3456788999999987 77777777774 46999999999999888763 12223322211110 112
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHh-hhccCCCCCHHHHHHHHH
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER-ILQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~ll~ 305 (328)
+.+|.|.+.. . ...+....+.|+|||++++.-........+. ...+... ........+.++++++++
T Consensus 93 g~~~~i~~~~------~-~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~-~~~~~k~~~i~Gs~~~~~~d~~e~l~ 160 (166)
T d1llua2 93 GAHGVLVTAV------S-NSAFGQAIGMARRGGTIALVGLPPGDFPTPI-FDVVLKGLHIAGSIVGTRADLQEALD 160 (166)
T ss_dssp SEEEEEECCS------C-HHHHHHHHTTEEEEEEEEECCCCSSEEEEEH-HHHHHTTCEEEECCSCCHHHHHHHHH
T ss_pred CCcccccccc------c-chHHHHHHHHhcCCcEEEEEEecCCCccCCH-HHHHhCCcEEEEEeecCHHHHHHHHH
Confidence 2334444322 2 3457889999999999988654322212222 2222221 112234567888887765
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.65 E-value=0.00019 Score=56.14 Aligned_cols=102 Identities=17% Similarity=0.092 Sum_probs=68.0
Q ss_pred ccccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------
Q 020307 157 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------- 227 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------- 227 (328)
....++.+||-+|||. |.++..+++.. +.+|+++|.+++-++.+++. .....+...+.....
T Consensus 22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~--------ga~~~~~~~~~~~~~~~~~~~~~ 92 (170)
T d1e3ja2 22 AGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNC--------GADVTLVVDPAKEEESSIIERIR 92 (170)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT--------TCSEEEECCTTTSCHHHHHHHHH
T ss_pred hCCCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHc--------CCcEEEeccccccccchhhhhhh
Confidence 3456788999999995 77777777764 45999999999999998873 222222221111110
Q ss_pred -CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 228 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 228 -~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
...+.+|+|+-.- .. ...+....+.++|+|++++......
T Consensus 93 ~~~g~g~D~vid~~-----g~-~~~~~~a~~~~~~~G~iv~~G~~~~ 133 (170)
T d1e3ja2 93 SAIGDLPNVTIDCS-----GN-EKCITIGINITRTGGTLMLVGMGSQ 133 (170)
T ss_dssp HHSSSCCSEEEECS-----CC-HHHHHHHHHHSCTTCEEEECSCCSS
T ss_pred cccccCCceeeecC-----CC-hHHHHHHHHHHhcCCceEEEecCCC
Confidence 0124578887432 22 3568889999999999998765443
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.58 E-value=3.1e-05 Score=60.83 Aligned_cols=133 Identities=11% Similarity=0.039 Sum_probs=77.8
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe-cCCCC-CCCCCccc
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRL-PFASGFVD 234 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~l-p~~~~~fD 234 (328)
...++.+||-+|+|. |.++..+++.. +.+|+++|.+++.++.+++. ... .++.. +-.+. ....+.+|
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~l--------Ga~-~~i~~~~~~~~~~~~~~~~d 93 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKM--------GAD-HYIATLEEGDWGEKYFDTFD 93 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH--------TCS-EEEEGGGTSCHHHHSCSCEE
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhcc--------CCc-EEeeccchHHHHHhhhcccc
Confidence 346789999999984 77777777663 45999999999999988874 212 22221 11111 11245689
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH-hhhccCCCCCHHHHHHHHH
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-RILQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~ll~ 305 (328)
+|+..-.-.+- ..+....+.|+|+|++++..........++ ...+.. .........+.++++++++
T Consensus 94 ~vi~~~~~~~~----~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~-~~~~~k~~~i~Gs~~g~~~~~~e~l~ 160 (168)
T d1piwa2 94 LIVVCASSLTD----IDFNIMPKAMKVGGRIVSISIPEQHEMLSL-KPYGLKAVSISYSALGSIKELNQLLK 160 (168)
T ss_dssp EEEECCSCSTT----CCTTTGGGGEEEEEEEEECCCCCSSCCEEE-CGGGCBSCEEEECCCCCHHHHHHHHH
T ss_pred eEEEEecCCcc----chHHHHHHHhhccceEEEeccccccccccH-HHHHhCCcEEEEEeeCCHHHHHHHHH
Confidence 88764322211 124567889999999988754333222222 111111 1112223457888887765
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.48 E-value=0.00014 Score=67.53 Aligned_cols=118 Identities=10% Similarity=-0.016 Sum_probs=77.9
Q ss_pred hhccccCCCeEEEEcCCcCHHHHHHHHhC----C--------------CceEEEEeCCHHHHHHHHHHHHhcCcCC--CC
Q 020307 155 EYFKSAQGGLLVDVSCGSGLFSRKFAKSG----T--------------YSGVVALDFSENMLRQCYDFIKQDNTIL--TS 214 (328)
Q Consensus 155 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~----~--------------~~~v~g~D~s~~~~~~a~~~~~~~~~~~--~~ 214 (328)
.++...++.+|+|-.||+|.|+..+.+.. . ...++|+|+++.+...|+-++-.++... ..
T Consensus 158 ~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~ 237 (524)
T d2ar0a1 158 HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 237 (524)
T ss_dssp HHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGG
T ss_pred hcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccc
Confidence 55666778899999999999987765531 1 1258999999999999987776543200 01
Q ss_pred CeEEEEecCCCCC-CCCCccceEEeccccc--cC-----------CCh-HHHHHHHHhcccCCcEEEEEEecc
Q 020307 215 NLALVRADVCRLP-FASGFVDAVHAGAALH--CW-----------PSP-SNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 215 ~i~~~~~d~~~lp-~~~~~fD~i~~~~vl~--h~-----------~d~-~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
...+..++....+ .....||+|+++=-+. .. .+. ..++..+.+.|+|||++.+..|..
T Consensus 238 ~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~ 310 (524)
T d2ar0a1 238 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 310 (524)
T ss_dssp TBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred cchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehH
Confidence 1223344433221 2346799999863221 10 111 258999999999999999988753
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.37 E-value=0.00057 Score=53.43 Aligned_cols=130 Identities=18% Similarity=0.105 Sum_probs=79.1
Q ss_pred ccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CCCCc
Q 020307 159 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FASGF 232 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~~ 232 (328)
..++.+||-+|+|. |.++..+++......++++|.+++-++.+++. ....++..+-+... .....
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~---------ga~~~i~~~~~~~~~~~~~~~~~g 100 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL---------GADHVVDARRDPVKQVMELTRGRG 100 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT---------TCSEEEETTSCHHHHHHHHTTTCC
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc---------ccceeecCcccHHHHHHHhhCCCC
Confidence 35788999999987 56666666653245889999999988888863 22233332211110 12345
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHh-hhccCCCCCHHHHHHHHH
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER-ILQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~ll~ 305 (328)
+|+|+-.-. . ...++...+.|++||++++.-.... ...+. ...+... ........+.++++++++
T Consensus 101 ~d~vid~~g-----~-~~~~~~a~~~l~~~G~iv~~G~~~~-~~~~~-~~l~~k~~~i~Gs~~~~~~d~~~~l~ 166 (172)
T d1h2ba2 101 VNVAMDFVG-----S-QATVDYTPYLLGRMGRLIIVGYGGE-LRFPT-IRVISSEVSFEGSLVGNYVELHELVT 166 (172)
T ss_dssp EEEEEESSC-----C-HHHHHHGGGGEEEEEEEEECCCSSC-CCCCH-HHHHHTTCEEEECCSCCHHHHHHHHH
T ss_pred ceEEEEecC-----c-chHHHHHHHHHhCCCEEEEEeCccc-ccCCH-HHHHhCCcEEEEEEecCHHHHHHHHH
Confidence 888875332 2 3458889999999999998764322 12222 2222221 113345668888888775
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.33 E-value=0.00045 Score=53.88 Aligned_cols=132 Identities=13% Similarity=0.087 Sum_probs=78.5
Q ss_pred cccCCCeEEEEcC-C-cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC------CC
Q 020307 158 KSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FA 229 (328)
Q Consensus 158 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~ 229 (328)
+..++.+||-+|+ | .|.++..+++.....+|+++|.+++-++.+++. ... .++..+-.+.. ..
T Consensus 24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~--------Ga~-~~i~~~~~~~~~~~~~~~~ 94 (170)
T d1jvba2 24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA--------GAD-YVINASMQDPLAEIRRITE 94 (170)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH--------TCS-EEEETTTSCHHHHHHHHTT
T ss_pred CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc--------CCc-eeeccCCcCHHHHHHHHhh
Confidence 4567889999997 3 355666666553345899999999998888764 111 22222221110 12
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHh-hhccCCCCCHHHHHHHHH
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER-ILQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~ll~ 305 (328)
.+.||+|+.... -...++...+.++|||++++.-........+. ...+... ........+.+++.++++
T Consensus 95 ~~~~d~vid~~g------~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~-~~~~~k~i~i~Gs~~~~~~d~~~~l~ 164 (170)
T d1jvba2 95 SKGVDAVIDLNN------SEKTLSVYPKALAKQGKYVMVGLFGADLHYHA-PLITLSEIQFVGSLVGNQSDFLGIMR 164 (170)
T ss_dssp TSCEEEEEESCC------CHHHHTTGGGGEEEEEEEEECCSSCCCCCCCH-HHHHHHTCEEEECCSCCHHHHHHHHH
T ss_pred cccchhhhcccc------cchHHHhhhhhcccCCEEEEeccccCccccCH-HHHHhCCcEEEEEecCCHHHHHHHHH
Confidence 356998886432 24557888999999999988754333222222 2222221 112233457788877665
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.26 E-value=0.00057 Score=52.99 Aligned_cols=129 Identities=19% Similarity=0.163 Sum_probs=75.2
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC------CCC
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FAS 230 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~~ 230 (328)
...++.+||-.|+|. |.....+++.. +.+|+++|.+++-++.+++. . .+.+........ ...
T Consensus 24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~~--------G--a~~~~~~~~~~~~~~~~~~~~ 92 (168)
T d1rjwa2 24 GAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKEL--------G--ADLVVNPLKEDAAKFMKEKVG 92 (168)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT--------T--CSEEECTTTSCHHHHHHHHHS
T ss_pred CCCCCCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhhc--------C--cceecccccchhhhhcccccC
Confidence 456789999999987 55666666653 45899999999998888762 1 112221111110 112
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhh-hccCCCCCHHHHHHHHH
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI-LQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ll~ 305 (328)
+.+|+|++ .+ . ...+....+.|+|+|++++..........+. ...+.... ......++.++++++++
T Consensus 93 ~~~~~v~~-~~-----~-~~~~~~a~~~l~~~G~i~~~g~~~~~~~~~~-~~~~~~~~~i~gs~~~~~~~~~~~l~ 160 (168)
T d1rjwa2 93 GVHAAVVT-AV-----S-KPAFQSAYNSIRRGGACVLVGLPPEEMPIPI-FDTVLNGIKIIGSIVGTRKDLQEALQ 160 (168)
T ss_dssp SEEEEEES-SC-----C-HHHHHHHHHHEEEEEEEEECCCCSSEEEEEH-HHHHHTTCEEEECCSCCHHHHHHHHH
T ss_pred CCceEEee-cC-----C-HHHHHHHHHHhccCCceEecccccCCCCCCH-HHHHHCCcEEEEEeeCCHHHHHHHHH
Confidence 33444433 22 2 4568999999999999998754433222222 22222211 12233467788887765
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.0011 Score=51.63 Aligned_cols=108 Identities=15% Similarity=0.103 Sum_probs=69.5
Q ss_pred ccccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------
Q 020307 157 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------- 227 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------- 227 (328)
....++.+||-+|+|. |.++..+++.....+|+++|.++.-++.|++. ... .++..+-....
T Consensus 22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~--------Ga~-~~~~~~~~~~~~~~~~~~~ 92 (171)
T d1pl8a2 22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI--------GAD-LVLQISKESPQEIARKVEG 92 (171)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT--------TCS-EEEECSSCCHHHHHHHHHH
T ss_pred hCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh--------CCc-ccccccccccccccccccc
Confidence 3456788999999987 66777777764334799999999999988763 111 22222211110
Q ss_pred CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcch
Q 020307 228 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL 279 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~ 279 (328)
-....+|+|+-.- .. ...++...+.+++||++++..........++
T Consensus 93 ~~g~g~Dvvid~~-----G~-~~~~~~a~~~~~~gG~iv~~G~~~~~~~~~~ 138 (171)
T d1pl8a2 93 QLGCKPEVTIECT-----GA-EASIQAGIYATRSGGTLVLVGLGSEMTTVPL 138 (171)
T ss_dssp HHTSCCSEEEECS-----CC-HHHHHHHHHHSCTTCEEEECSCCCSCCCCCH
T ss_pred cCCCCceEEEecc-----CC-chhHHHHHHHhcCCCEEEEEecCCCCCccCH
Confidence 0123578877533 23 3468899999999999988775544333333
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=0.00057 Score=53.22 Aligned_cols=133 Identities=14% Similarity=0.150 Sum_probs=77.0
Q ss_pred ccccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCC-CCCCCCccc
Q 020307 157 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVD 234 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD 234 (328)
.+..++.+||-+|+|. |.++..+++.. +.+++++|.+++-.+.+++. ... .++...-.. .....+.+|
T Consensus 26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~l--------Gad-~~i~~~~~~~~~~~~~~~D 95 (168)
T d1uufa2 26 WQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKAL--------GAD-EVVNSRNADEMAAHLKSFD 95 (168)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH--------TCS-EEEETTCHHHHHTTTTCEE
T ss_pred hCCCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhcc--------CCc-EEEECchhhHHHHhcCCCc
Confidence 3456889999999986 77888888874 45888999999888877763 111 222211111 111235689
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHH-hhhccCCCCCHHHHHHHHH
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-RILQNYNYLTEEEIEDLCT 305 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~ll~ 305 (328)
+++-.-. .+ ..+....+.++++|++++................+.. .........+..+++++++
T Consensus 96 ~vid~~g-----~~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs~~~~~~d~~e~l~ 161 (168)
T d1uufa2 96 FILNTVA-----AP-HNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLD 161 (168)
T ss_dssp EEEECCS-----SC-CCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCSCCHHHHHHHHH
T ss_pred eeeeeee-----cc-hhHHHHHHHHhcCCEEEEeccCCCCcccccHHHHHHCCcEEEEEeecCHHHHHHHHH
Confidence 8875432 22 2367788999999999987533221111111111111 1112234567888887776
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.12 E-value=0.0011 Score=52.22 Aligned_cols=98 Identities=21% Similarity=0.218 Sum_probs=64.4
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---------
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------- 227 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------- 227 (328)
...++.+||-+|+|. |.+...+++.....+|+++|.+++.++.+++. ... .++...-....
T Consensus 25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l--------Ga~-~vi~~~~~~~~~~~~~i~~~ 95 (182)
T d1vj0a2 25 ESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI--------GAD-LTLNRRETSVEERRKAIMDI 95 (182)
T ss_dssp SCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT--------TCS-EEEETTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc--------cce-EEEeccccchHHHHHHHHHh
Confidence 345789999999985 77888888774223799999999999988763 111 12211111100
Q ss_pred CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 228 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
.....+|+|+-. +..+ ..++...+.|+|||++++...
T Consensus 96 ~~~~g~Dvvid~-----vG~~-~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 96 THGRGADFILEA-----TGDS-RALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp TTTSCEEEEEEC-----SSCT-THHHHHHHHEEEEEEEEECCC
T ss_pred hCCCCceEEeec-----CCch-hHHHHHHHHhcCCCEEEEEee
Confidence 112358988743 2233 347888999999999987653
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.08 E-value=0.00084 Score=52.55 Aligned_cols=99 Identities=17% Similarity=0.097 Sum_probs=65.9
Q ss_pred ccccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CCC
Q 020307 157 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FAS 230 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~ 230 (328)
.+..++.+||-+|||. |.++..+++......++++|.++.-++.+++. . -..++..+-++.. +.+
T Consensus 24 ~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~--------G-a~~~i~~~~~~~~~~i~~~t~ 94 (174)
T d1f8fa2 24 LKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL--------G-ATHVINSKTQDPVAAIKEITD 94 (174)
T ss_dssp TCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH--------T-CSEEEETTTSCHHHHHHHHTT
T ss_pred hCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc--------C-CeEEEeCCCcCHHHHHHHHcC
Confidence 4567899999999986 55667776663344788999999999888874 1 1223322221110 224
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
+.+|+|+-. +.. ...++...++++|+|++++...
T Consensus 95 gg~D~vid~-----~G~-~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 95 GGVNFALES-----TGS-PEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp SCEEEEEEC-----SCC-HHHHHHHHHTEEEEEEEEECCC
T ss_pred CCCcEEEEc-----CCc-HHHHHHHHhcccCceEEEEEee
Confidence 568988743 222 3567889999999999988653
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.00 E-value=0.0013 Score=52.52 Aligned_cols=103 Identities=14% Similarity=0.146 Sum_probs=69.1
Q ss_pred ccccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-------
Q 020307 157 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF------- 228 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~------- 228 (328)
....++.+||.+|||. |..+..+++.....+|+++|.+++.++.|++. . ...+. +....++
T Consensus 21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~---------G-a~~~~-~~~~~~~~~~i~~~ 89 (195)
T d1kola2 21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ---------G-FEIAD-LSLDTPLHEQIAAL 89 (195)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---------T-CEEEE-TTSSSCHHHHHHHH
T ss_pred hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc---------c-ccEEE-eCCCcCHHHHHHHH
Confidence 3456899999999998 66777777764455899999999999988873 1 22222 2111111
Q ss_pred -CCCccceEEecccccc---------CCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 229 -ASGFVDAVHAGAALHC---------WPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 229 -~~~~fD~i~~~~vl~h---------~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
....+|+++-.-..+- .......++...++++|||++++.-.
T Consensus 90 t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 90 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred hCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 2345888885432110 11234679999999999999988753
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.97 E-value=0.0048 Score=53.72 Aligned_cols=150 Identities=14% Similarity=0.082 Sum_probs=91.7
Q ss_pred CeEEEEcCCcCHHHHHHH--------H--------hCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCC--CeEEEEecCC
Q 020307 163 GLLVDVSCGSGLFSRKFA--------K--------SGTYSGVVALDFSENMLRQCYDFIKQDNTILTS--NLALVRADVC 224 (328)
Q Consensus 163 ~~vLDiGcG~G~~~~~l~--------~--------~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~--~i~~~~~d~~ 224 (328)
-+|.|+||.+|..+..+. + .-|..+|+--|.-.+--...-+.+...+- ..+ -+.-+.+.+.
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~-~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEND-VDGVCFINGVPGSFY 131 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCS-CTTCEEEEEEESCSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhcccccc-CCCCeEEEecCCchh
Confidence 579999999998763221 1 12445677777654433333322222110 011 1233445665
Q ss_pred CCCCCCCccceEEeccccccCCC---------------------------------hHHHHHHHHhcccCCcEEEEEEec
Q 020307 225 RLPFASGFVDAVHAGAALHCWPS---------------------------------PSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 225 ~lp~~~~~fD~i~~~~vl~h~~d---------------------------------~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
.-=||+++.|+++++..||++.. ...+|+.=.+-|+|||+++++...
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g 211 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 44478999999999999999742 124788888889999999998877
Q ss_pred cCCCC---------cchhhHHHHHh-------------hhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 272 RYTSS---------TSLTGRVLRER-------------ILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 272 ~~~~~---------~~~~~~~~~~~-------------~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
+.... ...+...|... ..-...+.+.++++..+++.|.-.++
T Consensus 212 r~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~ 275 (359)
T d1m6ex_ 212 RRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLID 275 (359)
T ss_dssp CSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCE
T ss_pred cCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeee
Confidence 65211 11122223221 11345577899999999998775444
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.85 E-value=0.0013 Score=51.58 Aligned_cols=100 Identities=12% Similarity=0.177 Sum_probs=66.5
Q ss_pred ccccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC------CC
Q 020307 157 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FA 229 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~ 229 (328)
....++.+||-+|||. |.++..+++.....+|+++|.+++-++.+++. .. ..++...-..+. ..
T Consensus 23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l--------Ga-~~~i~~~~~~~~~~v~~~t~ 93 (174)
T d1jqba2 23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY--------GA-TDILNYKNGHIEDQVMKLTN 93 (174)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH--------TC-SEEECGGGSCHHHHHHHHTT
T ss_pred hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh--------Cc-cccccccchhHHHHHHHHhh
Confidence 3456788999999997 88888888874334799999999999888763 11 122211111110 11
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
...+|+|+-.- ..+ ..+++..+.++|+|++++.-..
T Consensus 94 g~G~D~vid~~-----g~~-~~~~~a~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 94 GKGVDRVIMAG-----GGS-ETLSQAVKMVKPGGIISNINYH 129 (174)
T ss_dssp TSCEEEEEECS-----SCT-THHHHHHHHEEEEEEEEECCCC
T ss_pred ccCcceEEEcc-----CCH-HHHHHHHHHHhcCCEEEEEeec
Confidence 23489887433 233 3478888999999999986543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.75 E-value=0.0069 Score=47.09 Aligned_cols=101 Identities=13% Similarity=0.075 Sum_probs=61.7
Q ss_pred ccccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-------C
Q 020307 157 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------F 228 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------~ 228 (328)
...+++.+||-+|||. |.++..+++.....+|+++|.+++-++.+++. ....++...-.+.. .
T Consensus 23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l---------Ga~~~i~~~~~d~~~~~~~~~~ 93 (174)
T d1p0fa2 23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL---------GATECLNPKDYDKPIYEVICEK 93 (174)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT---------TCSEEECGGGCSSCHHHHHHHH
T ss_pred hCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc---------CCcEEEcCCCchhHHHHHHHHh
Confidence 3456889999999997 55666666653245899999999999999873 22223321111110 1
Q ss_pred CCCccceEEeccccccCCChHHHHHHHHhcc-cCCcEEEEEEecc
Q 020307 229 ASGFVDAVHAGAALHCWPSPSNAVAEISRIL-RSGGVFVGTTFLR 272 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~L-kpgG~l~i~~~~~ 272 (328)
..+.+|+|+-. ...+.. +......+ +++|.+++.-...
T Consensus 94 ~~~G~d~vid~-----~g~~~~-~~~~~~~~~~~~G~~v~vG~~~ 132 (174)
T d1p0fa2 94 TNGGVDYAVEC-----AGRIET-MMNALQSTYCGSGVTVVLGLAS 132 (174)
T ss_dssp TTSCBSEEEEC-----SCCHHH-HHHHHHTBCTTTCEEEECCCCC
T ss_pred cCCCCcEEEEc-----CCCchH-HHHHHHHHHHhcCceEEEEEec
Confidence 13457887743 233444 45555545 5568888766443
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.75 E-value=0.0012 Score=57.08 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=49.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 226 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 226 (328)
.+..|||||.|.|.++..|.+.+...+++++|+++...+..++.+. ..++.++.+|+..+
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~------~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE------GSPLQILKRDPYDW 102 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT------TSSCEEECSCTTCH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc------CCCcEEEeCchhhc
Confidence 4678999999999999999987433489999999999999887754 45788999988643
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.63 E-value=0.0065 Score=47.30 Aligned_cols=100 Identities=15% Similarity=0.090 Sum_probs=67.7
Q ss_pred ccccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-------C
Q 020307 157 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------F 228 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------~ 228 (328)
....++.+||-+|||. |.++..+++......|+.+|.+++-++.+++. ....++...-.+.. .
T Consensus 24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~---------Ga~~~i~~~~~~~~~~~~~~~~ 94 (174)
T d1e3ia2 24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL---------GATDCLNPRELDKPVQDVITEL 94 (174)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT---------TCSEEECGGGCSSCHHHHHHHH
T ss_pred hCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh---------CCCcccCCccchhhhhhhHhhh
Confidence 3456889999999998 88888888875445799999999998888873 22222221111111 1
Q ss_pred CCCccceEEeccccccCCChHHHHHHHHhcccCC-cEEEEEEec
Q 020307 229 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFL 271 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~~ 271 (328)
..+.+|+|+-. ...+ ..+.+..+.+++| |++++.-..
T Consensus 95 ~~~G~d~vie~-----~G~~-~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 95 TAGGVDYSLDC-----AGTA-QTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp HTSCBSEEEES-----SCCH-HHHHHHHHTBCTTTCEEEECCCS
T ss_pred hcCCCcEEEEe-----cccc-hHHHHHHHHhhcCCeEEEecCCC
Confidence 13458888743 3334 4588999999996 999887643
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.005 Score=47.82 Aligned_cols=93 Identities=12% Similarity=0.073 Sum_probs=63.5
Q ss_pred cccCCCeEEEEcC-C-cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------
Q 020307 158 KSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------- 227 (328)
Q Consensus 158 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------- 227 (328)
+..++.+||-.|+ | .|..+..+++.. +.++++++.+++..+.+++. + --.++ |..+..
T Consensus 25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~----G-----a~~vi--~~~~~~~~~~i~~~ 92 (174)
T d1yb5a2 25 CVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQN----G-----AHEVF--NHREVNYIDKIKKY 92 (174)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T-----CSEEE--ETTSTTHHHHHHHH
T ss_pred CCCCCCEEEEEecccccccccccccccc-Cccccccccccccccccccc----C-----ccccc--ccccccHHHHhhhh
Confidence 4567899999996 3 477777778774 45999999998887777652 1 11222 222211
Q ss_pred CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 228 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.....+|+|+..-. ...+....+.|+|+|+++..-
T Consensus 93 t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 93 VGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp HCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEECC
T ss_pred hccCCceEEeeccc-------HHHHHHHHhccCCCCEEEEEe
Confidence 12456999886432 346888999999999998864
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.38 E-value=0.0057 Score=50.44 Aligned_cols=82 Identities=18% Similarity=0.056 Sum_probs=59.7
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcC------CCCCeEEEEecCCC-CCCCCCccc
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI------LTSNLALVRADVCR-LPFASGFVD 234 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~------~~~~i~~~~~d~~~-lp~~~~~fD 234 (328)
..+|||.-+|.|..+..++..|. +|+++|-++......++.+...... ...++.++.+|..+ +.-...+||
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~G~--~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D 166 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CCEEEECCCcccHHHHHHHhCCC--EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence 45899999999999999999976 9999999998776666554332110 02378999999643 332356799
Q ss_pred eEEeccccccC
Q 020307 235 AVHAGAALHCW 245 (328)
Q Consensus 235 ~i~~~~vl~h~ 245 (328)
+|++.=.+.+-
T Consensus 167 vIYlDPMFp~~ 177 (250)
T d2oyra1 167 VVYLDPMFPHK 177 (250)
T ss_dssp EEEECCCCCCC
T ss_pred EEEECCCCccc
Confidence 99987666543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.34 E-value=0.0013 Score=50.75 Aligned_cols=99 Identities=18% Similarity=0.183 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEec
Q 020307 161 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~ 239 (328)
++.+|+-||+|. |..+...+... +.+|+.+|.+++.++..+..... ++.+...+-+.+.-.-...|+|+..
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~-------~~~~~~~~~~~l~~~~~~aDivI~a 102 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS-------RVELLYSNSAEIETAVAEADLLIGA 102 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG-------GSEEEECCHHHHHHHHHTCSEEEEC
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcc-------cceeehhhhhhHHHhhccCcEEEEe
Confidence 578999999997 66666666653 45999999999999888776543 4455544433332112358999987
Q ss_pred cccccCCChHHHHHHHHhcccCCcEEEE
Q 020307 240 AALHCWPSPSNAVAEISRILRSGGVFVG 267 (328)
Q Consensus 240 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i 267 (328)
-.+.--+-|.-+-+++.+.+|||.+++=
T Consensus 103 alipG~~aP~lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 103 VLVPGRRAPILVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp CCCTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred eecCCcccCeeecHHHHhhcCCCcEEEE
Confidence 7655555666667899999999987653
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.28 E-value=0.0093 Score=45.91 Aligned_cols=92 Identities=14% Similarity=0.207 Sum_probs=60.9
Q ss_pred eEEEEcCCc-C-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccc
Q 020307 164 LLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 241 (328)
Q Consensus 164 ~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~v 241 (328)
+|+=||||. | .++..|.+.++..+|+|+|.+++.++.+++. ..+.....+.... .....|+|+..--
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~---------~~~~~~~~~~~~~--~~~~~dlIila~p 71 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL---------GIIDEGTTSIAKV--EDFSPDFVMLSSP 71 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT---------TSCSEEESCGGGG--GGTCCSEEEECSC
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh---------hcchhhhhhhhhh--hccccccccccCC
Confidence 588899996 4 4677788888777899999999999988873 2222233333222 2345788886442
Q ss_pred cccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 242 LHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 242 l~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
.. .-..++.++...++++..++-..
T Consensus 72 ~~---~~~~vl~~l~~~~~~~~ii~d~~ 96 (171)
T d2g5ca2 72 VR---TFREIAKKLSYILSEDATVTDQG 96 (171)
T ss_dssp HH---HHHHHHHHHHHHSCTTCEEEECC
T ss_pred ch---hhhhhhhhhhccccccccccccc
Confidence 11 22467888888898876554433
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.21 E-value=0.012 Score=45.79 Aligned_cols=101 Identities=14% Similarity=0.088 Sum_probs=62.7
Q ss_pred cccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC------CCC
Q 020307 158 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FAS 230 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~~ 230 (328)
+.+++.+||=+|+|. |.+...+++.....+|+++|.+++-++.|++.- ....+-..+..... ...
T Consensus 26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~G--------A~~~in~~~~~~~~~~~~~~~~g 97 (176)
T d1d1ta2 26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVG--------ATECISPKDSTKPISEVLSEMTG 97 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHT--------CSEEECGGGCSSCHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcC--------CcEEECccccchHHHHHHHHhcc
Confidence 456789999999997 556666666643468999999999999998852 22222111211110 113
Q ss_pred CccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 231 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
..+|+++-.. ..+......+..+++++|++++.-..
T Consensus 98 ~G~d~vi~~~-----g~~~~~~~a~~~~~~~~G~~v~vG~~ 133 (176)
T d1d1ta2 98 NNVGYTFEVI-----GHLETMIDALASCHMNYGTSVVVGVP 133 (176)
T ss_dssp SCCCEEEECS-----CCHHHHHHHHTTSCTTTCEEEECSCC
T ss_pred ccceEEEEeC-----CchHHHHHHHHHhhcCCeEEEEEEcc
Confidence 4578777433 34455444455555676888886543
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=95.86 E-value=0.092 Score=44.17 Aligned_cols=151 Identities=15% Similarity=0.046 Sum_probs=90.5
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCC-C-------CCCCcc
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-------FASGFV 233 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-------~~~~~f 233 (328)
...|+.+|||.=.-...+ ...++.+++-+|. +++++.-++.+...+.....+..++..|+..- + +..+.-
T Consensus 90 ~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~p 167 (297)
T d2uyoa1 90 IRQFVILASGLDSRAYRL-DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 167 (297)
T ss_dssp CCEEEEETCTTCCHHHHS-CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCeEEEeCcccCChhhhc-CCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCC
Confidence 346777999976555444 2234557777884 77777777777765432245677888888642 1 222334
Q ss_pred ceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCCCCcchhh-HHHHHhh------------hccCCCCCHH
Q 020307 234 DAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG-RVLRERI------------LQNYNYLTEE 298 (328)
Q Consensus 234 D~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~~~~ 298 (328)
-++++-.++.+++.. ..+|+.+.+...||+.+++.............. ....... .......+..
T Consensus 168 tl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (297)
T d2uyoa1 168 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENRA 247 (297)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTCC
T ss_pred EEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecccccchhHHHHHHHHHHHHhhhccccCCChHhhccCCCchh
Confidence 566667778888643 588999999999999988865433211111100 0011000 0111223446
Q ss_pred HHHHHHHHCCCeEEEE
Q 020307 299 EIEDLCTSCGLTNYTS 314 (328)
Q Consensus 299 ~l~~ll~~~Gf~~v~~ 314 (328)
+....|+.+||++...
T Consensus 248 ~~~~~l~~~Gw~~~~~ 263 (297)
T d2uyoa1 248 VVADWLNRHGWRATAQ 263 (297)
T ss_dssp CHHHHHTTTTEEEEEE
T ss_pred hHHHHHHhCCCEEEEe
Confidence 7889999999987653
|
| >d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Zinc beta-ribbon family: PhnA zinc-binding domain domain: Hypothetical protein PA0128, N-terminal domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.59 E-value=0.0032 Score=35.15 Aligned_cols=31 Identities=23% Similarity=0.569 Sum_probs=24.8
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCccccCc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 100 (328)
+-.||.|++.....++ ..+.|+.|+|.+...
T Consensus 3 lP~CP~C~seytYedg----------~l~vCPeC~hEW~~~ 33 (38)
T d2akla2 3 LPPCPQCNSEYTYEDG----------ALLVCPECAHEWSPN 33 (38)
T ss_dssp SCCCTTTCCCCCEECS----------SSEEETTTTEEECTT
T ss_pred CCcCCCCCCcceEcCC----------CEEECCcccCcCCcc
Confidence 3469999999887765 589999999987543
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.31 E-value=0.033 Score=42.38 Aligned_cols=87 Identities=7% Similarity=0.078 Sum_probs=56.2
Q ss_pred eEEEEcCCc--CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceEEeccc
Q 020307 164 LLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 241 (328)
Q Consensus 164 ~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i~~~~v 241 (328)
+|.=||+|. +.++..|.+.+. +|+++|.+++.++.+++. ..+.....+.+.+ ...|+|+..--
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~---------~~~~~~~~~~~~~----~~~DiIilavp 66 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVER---------QLVDEAGQDLSLL----QTAKIIFLCTP 66 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHT---------TSCSEEESCGGGG----TTCSEEEECSC
T ss_pred EEEEEeecHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHh---------hccceeeeecccc----cccccccccCc
Confidence 577889885 346677777776 999999999988877652 2222222233322 35798885331
Q ss_pred cccCCChHHHHHHHHhcccCCcEEEEE
Q 020307 242 LHCWPSPSNAVAEISRILRSGGVFVGT 268 (328)
Q Consensus 242 l~h~~d~~~~l~~~~r~LkpgG~l~i~ 268 (328)
.. ....+++++...|+++.+++-.
T Consensus 67 ~~---~~~~vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 67 IQ---LILPTLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp HH---HHHHHHHHHGGGSCTTCEEEEC
T ss_pred Hh---hhhhhhhhhhhhcccccceeec
Confidence 11 2247788888888888766543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.21 E-value=0.15 Score=38.88 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=61.7
Q ss_pred ccccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE-ecCCCCC------C
Q 020307 157 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLP------F 228 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~~lp------~ 228 (328)
.+.+++.+||-+|+|. |.....+++.....+|+++|.+++-.+.+++. .....+. .+..+.- .
T Consensus 24 ~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~---------Ga~~~i~~~~~~~~~~~~~~~~ 94 (176)
T d2jhfa2 24 AKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV---------GATECVNPQDYKKPIQEVLTEM 94 (176)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT---------TCSEEECGGGCSSCHHHHHHHH
T ss_pred hCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh---------CCeeEEecCCchhHHHHHHHHH
Confidence 3467899999999976 44555555554456999999999999888773 2222222 1221110 1
Q ss_pred CCCccceEEeccccccCCChHHHHHHHHhcccCC-cEEEEEEecc
Q 020307 229 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFLR 272 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~~~ 272 (328)
..+.+|+|+-... .+ ..++.....++++ |.+++.....
T Consensus 95 ~~~G~D~vid~~G-----~~-~~~~~a~~~~~~~~g~~~~~~~~~ 133 (176)
T d2jhfa2 95 SNGGVDFSFEVIG-----RL-DTMVTALSCCQEAYGVSVIVGVPP 133 (176)
T ss_dssp TTSCBSEEEECSC-----CH-HHHHHHHHHBCTTTCEEEECSCCC
T ss_pred hcCCCCEEEecCC-----ch-hHHHHHHHHHhcCCcceEEecCCC
Confidence 2346898885433 23 3466677777776 5555554433
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=94.98 E-value=0.083 Score=40.77 Aligned_cols=96 Identities=10% Similarity=-0.037 Sum_probs=64.5
Q ss_pred ccccCCCeEEEEcCCc--CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC------C
Q 020307 157 FKSAQGGLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------F 228 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~ 228 (328)
.+..++.+||-.|++. |..+..+++.. +.+|++++-+++..+.+++. ..-..+..+-+... .
T Consensus 25 ~~v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~---------Ga~~vi~~~~~~~~~~~~~~~ 94 (182)
T d1v3va2 25 CGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQI---------GFDAAFNYKTVNSLEEALKKA 94 (182)
T ss_dssp TCCCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT---------TCSEEEETTSCSCHHHHHHHH
T ss_pred hCCCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhh---------hhhhhcccccccHHHHHHHHh
Confidence 3456889999888765 56778888774 45999999999888777763 12222222211110 1
Q ss_pred CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 229 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
....+|+|+- .+. ...+++..+.|+|+|.+++.-
T Consensus 95 ~~~Gvd~v~D-----~vG--~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 95 SPDGYDCYFD-----NVG--GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp CTTCEEEEEE-----SSC--HHHHHHHGGGEEEEEEEEECC
T ss_pred hcCCCceeEE-----ecC--chhhhhhhhhccCCCeEEeec
Confidence 2345888874 332 356899999999999999864
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.93 E-value=0.059 Score=41.23 Aligned_cols=98 Identities=14% Similarity=0.125 Sum_probs=62.6
Q ss_pred ccccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-------C
Q 020307 157 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------F 228 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------~ 228 (328)
.+..++.+||-.|||. |.++..+++......|+++|.+++-++.+++. . ...++..+-...+ .
T Consensus 24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l--------G-a~~~i~~~~~~~~~~~~~~~~ 94 (176)
T d2fzwa2 24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF--------G-ATECINPQDFSKPIQEVLIEM 94 (176)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH--------T-CSEEECGGGCSSCHHHHHHHH
T ss_pred hCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh--------C-CcEEEeCCchhhHHHHHHHHH
Confidence 3456899999999884 45666666653345899999999998888864 1 1122221111111 1
Q ss_pred CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 229 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
..+.+|+|+-.-. ....++.....+++||.+++..
T Consensus 95 ~~~g~D~vid~~G------~~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 95 TDGGVDYSFECIG------NVKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp TTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred cCCCCcEeeecCC------CHHHHHHHHHhhcCCceeEEEE
Confidence 1346888885432 3456788999999988766543
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=94.76 E-value=0.15 Score=38.81 Aligned_cols=99 Identities=18% Similarity=0.182 Sum_probs=58.4
Q ss_pred ccccCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-------C
Q 020307 157 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------F 228 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------~ 228 (328)
...+++.+||-+|+|. |.....+++......|+++|.+++-++.+++. .-..++...-++.. .
T Consensus 24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~---------GAd~~in~~~~~~~~~~~~~~~ 94 (175)
T d1cdoa2 24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF---------GATDFVNPNDHSEPISQVLSKM 94 (175)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT---------TCCEEECGGGCSSCHHHHHHHH
T ss_pred hCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc---------CCcEEEcCCCcchhHHHHHHhh
Confidence 3456889999999998 44445455554355899999999999888873 22223321111111 1
Q ss_pred CCCccceEEeccccccCCChHHHHHHHHhcccCC-cEEEEEEe
Q 020307 229 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 270 (328)
Q Consensus 229 ~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~ 270 (328)
..+.+|+|+-.- .. ...+......+++| |++++...
T Consensus 95 ~~~G~d~vid~~-----G~-~~~~~~a~~~~~~g~~~~~~~g~ 131 (175)
T d1cdoa2 95 TNGGVDFSLECV-----GN-VGVMRNALESCLKGWGVSVLVGW 131 (175)
T ss_dssp HTSCBSEEEECS-----CC-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred ccCCcceeeeec-----CC-HHHHHHHHHHhhCCCcceeEEEe
Confidence 124588887433 23 33456666666665 55554443
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.76 E-value=0.02 Score=44.53 Aligned_cols=107 Identities=17% Similarity=0.099 Sum_probs=64.0
Q ss_pred cCCCeEEEEcCCc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcC---CCCCeEEEEecCCCCC--C-----
Q 020307 160 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---LTSNLALVRADVCRLP--F----- 228 (328)
Q Consensus 160 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~---~~~~i~~~~~d~~~lp--~----- 228 (328)
-++.+||-||+|. |..+...+... +++|+.+|.+++.+++.+......-.. ......-..+.+.++. +
T Consensus 27 V~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 27 VPPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred cCCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence 3678999999998 66666665553 559999999999888887643221000 0000000000111110 0
Q ss_pred -----CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEE
Q 020307 229 -----ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVG 267 (328)
Q Consensus 229 -----~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i 267 (328)
.-...|+|+..-.+.--+.|.-+-+++.+.+|||.+++=
T Consensus 106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVD 149 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIID 149 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEE
T ss_pred HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEE
Confidence 012579999877666556666667889999999987653
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=94.67 E-value=0.03 Score=45.69 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=41.5
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK 206 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~ 206 (328)
.+|..|||.=||+|..+.+..+.+- +.+|+|++++.++.|++++.
T Consensus 211 ~~gd~VlDpF~GSGTT~~aa~~~~R--~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 211 NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCchHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHc
Confidence 5789999999999999999998876 99999999999999999875
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.58 E-value=0.04 Score=42.60 Aligned_cols=95 Identities=18% Similarity=0.121 Sum_probs=61.4
Q ss_pred cccCCCeEEEEcC-C-cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC------CC
Q 020307 158 KSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FA 229 (328)
Q Consensus 158 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~ 229 (328)
...++.+||-.|. | .|.++..+++.. +.++++++-+++..+.+++. ... .++...-.++. ..
T Consensus 22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~--------Ga~-~vi~~~~~~~~~~v~~~t~ 91 (183)
T d1pqwa_ 22 RLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRL--------GVE-YVGDSRSVDFADEILELTD 91 (183)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTT--------CCS-EEEETTCSTHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccccc--------ccc-ccccCCccCHHHHHHHHhC
Confidence 4567889999873 3 367778887763 34899988888777776642 112 22221111110 12
Q ss_pred CCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 230 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 230 ~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
...+|+|+..-. ...++++.+.|+++|+++...
T Consensus 92 ~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 92 GYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp TCCEEEEEECCC-------THHHHHHHHTEEEEEEEEECS
T ss_pred CCCEEEEEeccc-------chHHHHHHHHhcCCCEEEEEc
Confidence 356999996443 245788899999999998863
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.38 E-value=0.01 Score=45.93 Aligned_cols=92 Identities=21% Similarity=0.154 Sum_probs=59.7
Q ss_pred cccCCCeEEEEcC-Cc-CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCCCc
Q 020307 158 KSAQGGLLVDVSC-GS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF 232 (328)
Q Consensus 158 ~~~~~~~vLDiGc-G~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~ 232 (328)
+..++.+||-.|. |. |.+...+++.. +.+|++++.+++..+.+++. .....+ |..+.. -....
T Consensus 24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~l--------Ga~~~i---~~~~~~~~~~~~~g 91 (171)
T d1iz0a2 24 QARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLAL--------GAEEAA---TYAEVPERAKAWGG 91 (171)
T ss_dssp TCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHT--------TCSEEE---EGGGHHHHHHHTTS
T ss_pred CCCCCCEEEEEeccccchhhhhhhhccc-cccccccccccccccccccc--------ccceee---ehhhhhhhhhcccc
Confidence 3467899999885 43 67777788774 45999999998888777652 111111 222211 12345
Q ss_pred cceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 233 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 233 fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+|+|+-.. .+ .+....+.|+|+|+++..-
T Consensus 92 ~D~v~d~~-----G~---~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 92 LDLVLEVR-----GK---EVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp EEEEEECS-----CT---THHHHHTTEEEEEEEEEC-
T ss_pred cccccccc-----ch---hHHHHHHHHhcCCcEEEEe
Confidence 89887532 21 2577889999999988753
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=94.38 E-value=0.076 Score=40.74 Aligned_cols=94 Identities=10% Similarity=0.043 Sum_probs=63.5
Q ss_pred cccCCCeEEEEcCCc--CHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC-------
Q 020307 158 KSAQGGLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF------- 228 (328)
Q Consensus 158 ~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~------- 228 (328)
+..++.+||-.|+|. |.++..+++.. +.+|++++.|++-.+.+++. ... .++ |..+..+
T Consensus 25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~l--------Ga~-~vi--~~~~~d~~~~v~~~ 92 (179)
T d1qora2 25 EIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKA--------GAW-QVI--NYREEDLVERLKEI 92 (179)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH--------TCS-EEE--ETTTSCHHHHHHHH
T ss_pred CCCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhc--------CCe-EEE--ECCCCCHHHHHHHH
Confidence 456788999997664 66788887763 45999999999999888764 111 222 2222111
Q ss_pred -CCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEe
Q 020307 229 -ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 229 -~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
....+|+|+..-.- ..+......++++|++++...
T Consensus 93 t~g~g~d~v~d~~g~-------~~~~~~~~~l~~~G~~v~~g~ 128 (179)
T d1qora2 93 TGGKKVRVVYDSVGR-------DTWERSLDCLQRRGLMVSFGN 128 (179)
T ss_dssp TTTCCEEEEEECSCG-------GGHHHHHHTEEEEEEEEECCC
T ss_pred hCCCCeEEEEeCccH-------HHHHHHHHHHhcCCeeeeccc
Confidence 24568887754431 246788999999999877553
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=94.02 E-value=0.027 Score=47.47 Aligned_cols=47 Identities=11% Similarity=0.107 Sum_probs=42.3
Q ss_pred ccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh
Q 020307 159 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 207 (328)
Q Consensus 159 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~ 207 (328)
..++..|||.=||+|..+.+....+- +.+|+|++++.++.|++++.+
T Consensus 248 s~~gdiVlDpF~GSGTT~~AA~~lgR--~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 248 TEPDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSC
T ss_pred ccCCCEEEecCCCCcHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHHHh
Confidence 35789999999999999999999876 999999999999999988654
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.02 E-value=0.13 Score=43.48 Aligned_cols=126 Identities=13% Similarity=0.095 Sum_probs=76.7
Q ss_pred CCeEEEEcCCcCHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCCCccceEE
Q 020307 162 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVH 237 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~i~ 237 (328)
..+|+|+=||.|.+...|...|...+ +.++|+++.+++..+.+ .+...++.+|+.++. ++...+|+++
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n--------~~~~~~~~~di~~~~~~~~~~~~~Dll~ 73 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN--------FPHTQLLAKTIEGITLEEFDRLSFDMIL 73 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH--------CTTSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHH--------CCCCCcccCchhhCCHhHcCCCCccEEE
Confidence 35799999999999988888775334 67999999988877765 445567778887654 2223689988
Q ss_pred eccccccC---------CChH-HHHHHHHhcc-----cCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHH
Q 020307 238 AGAALHCW---------PSPS-NAVAEISRIL-----RSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIED 302 (328)
Q Consensus 238 ~~~vl~h~---------~d~~-~~l~~~~r~L-----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 302 (328)
...-...+ .|+. .++.++.+++ ||. +++.+.... ... .-..+.+.+
T Consensus 74 ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk--~~i~ENV~~--l~~---------------~~~~~~i~~ 134 (343)
T d1g55a_ 74 MSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKG--FEV---------------SSTRDLLIQ 134 (343)
T ss_dssp ECCC------------------CHHHHHHHHGGGCSSCCS--EEEEEEETT--GGG---------------SHHHHHHHH
T ss_pred eecccccccccccccccccccccccchhhhhHhhhcCCCc--eeeeeccCC--ccc---------------chhhHHHHh
Confidence 65332222 2332 2344445544 464 444443321 000 011356888
Q ss_pred HHHHCCCeEEEE
Q 020307 303 LCTSCGLTNYTS 314 (328)
Q Consensus 303 ll~~~Gf~~v~~ 314 (328)
.|++.|+.+...
T Consensus 135 ~l~~~GY~v~~~ 146 (343)
T d1g55a_ 135 TIENCGFQYQEF 146 (343)
T ss_dssp HHHHTTEEEEEE
T ss_pred hhhcccccccee
Confidence 899999987654
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.99 E-value=0.25 Score=40.26 Aligned_cols=81 Identities=17% Similarity=0.132 Sum_probs=60.6
Q ss_pred cCCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---------
Q 020307 160 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------- 227 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------- 227 (328)
.+++.+|-.|++.|- .+..|++.|. +|+..|.+++.++.+.+.+...+. ..++.++.+|+.+..
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v~~~v~~~ 83 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGY--PGTLIPYRCDLSNEEDILSMFSAI 83 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--SSEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CceEEEEEccCCCHHHHHHHHHHH
Confidence 467899999988874 5666777776 999999999999998888877542 346788899997632
Q ss_pred -CCCCccceEEecccccc
Q 020307 228 -FASGFVDAVHAGAALHC 244 (328)
Q Consensus 228 -~~~~~fD~i~~~~vl~h 244 (328)
-.-+.+|+++.+....+
T Consensus 84 ~~~~g~iD~lVnnAg~~~ 101 (257)
T d1xg5a_ 84 RSQHSGVDICINNAGLAR 101 (257)
T ss_dssp HHHHCCCSEEEECCCCCC
T ss_pred HHhcCCCCEEEecccccC
Confidence 01257899998765544
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.98 E-value=0.2 Score=38.42 Aligned_cols=99 Identities=12% Similarity=0.013 Sum_probs=64.1
Q ss_pred ccCCCeEEEEcCC--cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEE-EecC-CC-CCCCCCcc
Q 020307 159 SAQGGLLVDVSCG--SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV-RADV-CR-LPFASGFV 233 (328)
Q Consensus 159 ~~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~-~~d~-~~-lp~~~~~f 233 (328)
..++.+||--|.+ .|.++.++++.. +.+|+++.-+++-.+.+++.-. ...+. ..+. +. .....+.+
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lGa--------~~vi~~~~~~~~~~~~~~~~gv 99 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGA--------KEVLAREDVMAERIRPLDKQRW 99 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTC--------SEEEECC---------CCSCCE
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhccc--------ceeeecchhHHHHHHHhhccCc
Confidence 3457889998854 467888888774 5699999998888888876311 11111 1111 11 11235679
Q ss_pred ceEEeccccccCCChHHHHHHHHhcccCCcEEEEEEeccC
Q 020307 234 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 273 (328)
Q Consensus 234 D~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 273 (328)
|+|+-.-. ...+....+.|+|||+++.......
T Consensus 100 D~vid~vg-------g~~~~~~l~~l~~~Griv~~G~~~g 132 (176)
T d1xa0a2 100 AAAVDPVG-------GRTLATVLSRMRYGGAVAVSGLTGG 132 (176)
T ss_dssp EEEEECST-------TTTHHHHHHTEEEEEEEEECSCCSS
T ss_pred CEEEEcCC-------chhHHHHHHHhCCCceEEEeecccC
Confidence 98875322 2248899999999999998876543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.35 E-value=0.067 Score=44.03 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=42.7
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHh
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 207 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~ 207 (328)
.++..|||.=+|+|..+.+..+.+- +++|+|+++...+.|++++..
T Consensus 206 ~~gdiVLDpF~GSGTT~~Aa~~lgR--~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 206 HPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHH
T ss_pred CCCCEEEecCCCCcHHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHH
Confidence 5789999999999999999999876 999999999999999999875
|
| >d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Zinc beta-ribbon family: Transcriptional factor domain domain: Transcription initiation factor TFIIB, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.026 Score=34.99 Aligned_cols=31 Identities=13% Similarity=0.340 Sum_probs=22.5
Q ss_pred cCcccccCCCchhhccCCCCccccccccCceeeCCCCcc
Q 020307 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (328)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 96 (328)
+..+.||.|++.....+.. .+.+.|..||.+
T Consensus 9 ~~~~~Cp~Cgs~~ii~D~~--------~Ge~vC~~CG~V 39 (58)
T d1dl6a_ 9 LPRVTCPNHPDAILVEDYR--------AGDMICPECGLV 39 (58)
T ss_dssp CSCCSBTTBSSSCCEECSS--------SCCEECTTTCCE
T ss_pred ccccCCCCCCCCCEEEECC--------CCcEecccCCCE
Confidence 4668899999975443321 378999999865
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.73 E-value=0.24 Score=35.75 Aligned_cols=83 Identities=10% Similarity=0.129 Sum_probs=52.2
Q ss_pred eEEEEcCCcCHHHHHHH----HhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----CCCCccce
Q 020307 164 LLVDVSCGSGLFSRKFA----KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA 235 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~----~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~ 235 (328)
+|+=+|+| .++..++ +.+. +|+.+|.+++.++.++.. .++.++.+|..+.. ..-...|.
T Consensus 2 ~IvI~G~G--~~G~~la~~L~~~g~--~v~vid~d~~~~~~~~~~---------~~~~vi~Gd~~~~~~l~~~~i~~a~~ 68 (132)
T d1lssa_ 2 YIIIAGIG--RVGYTLAKSLSEKGH--DIVLIDIDKDICKKASAE---------IDALVINGDCTKIKTLEDAGIEDADM 68 (132)
T ss_dssp EEEEECCS--HHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH---------CSSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred EEEEECCC--HHHHHHHHHHHHCCC--CcceecCChhhhhhhhhh---------hhhhhccCcccchhhhhhcChhhhhh
Confidence 57777775 4544444 4454 899999999988877653 25678889986643 12245788
Q ss_pred EEeccccccCCChH--HHHHHHHhcccCCcE
Q 020307 236 VHAGAALHCWPSPS--NAVAEISRILRSGGV 264 (328)
Q Consensus 236 i~~~~vl~h~~d~~--~~l~~~~r~LkpgG~ 264 (328)
+++.. ++.. .....+.+.+.+.-.
T Consensus 69 vv~~t-----~~d~~N~~~~~~~k~~~~~~i 94 (132)
T d1lssa_ 69 YIAVT-----GKEEVNLMSSLLAKSYGINKT 94 (132)
T ss_dssp EEECC-----SCHHHHHHHHHHHHHTTCCCE
T ss_pred hcccC-----CcHHHHHHHHHHHHHcCCceE
Confidence 87632 2332 334455566777643
|
| >d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Zinc beta-ribbon family: Transcriptional factor domain domain: Transcriptional factor SII, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.64 E-value=0.03 Score=33.48 Aligned_cols=39 Identities=18% Similarity=0.442 Sum_probs=23.6
Q ss_pred ccCcccccCCCchhh---ccCCCCccccccccCceeeCCCCccc
Q 020307 57 EGDLFSCPICYEPLI---RKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 57 ~~~~l~CP~C~~~l~---~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
.++++.||.|++.-. ..... +-++-....+.|.+|++.+
T Consensus 6 ~T~~~~C~kC~~~~~~~~~~QtR--SADEp~T~F~~C~~Cg~~W 47 (50)
T d1tfia_ 6 QTDLFTCGKCKKKNCTYTQVQTR--SADEPMTTFVVCNECGNRW 47 (50)
T ss_dssp ECCCSCCSSSCSSCEEEEEECSS--SSSSCCEEEEEESSSCCEE
T ss_pred ccCCEECCCCCCCccEEEEEEcc--CCCCCceEEEEccccCCee
Confidence 358899999998521 11111 1122233478999999876
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=91.62 E-value=0.33 Score=41.78 Aligned_cols=48 Identities=10% Similarity=0.116 Sum_probs=35.8
Q ss_pred cCCCeEEEEcCCcCHHHHHHHHhC-------CCceEEEEeCCHHHHHHHHHHHHh
Q 020307 160 AQGGLLVDVSCGSGLFSRKFAKSG-------TYSGVVALDFSENMLRQCYDFIKQ 207 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~~~~~l~~~~-------~~~~v~g~D~s~~~~~~a~~~~~~ 207 (328)
.+...|+|+|+|+|.++..+.+.. ...+++-+|+|+...+.-++.+..
T Consensus 78 ~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~ 132 (365)
T d1zkda1 78 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG 132 (365)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred CccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc
Confidence 345689999999999988776531 234689999999877766665543
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.62 E-value=0.45 Score=38.64 Aligned_cols=105 Identities=17% Similarity=0.223 Sum_probs=73.1
Q ss_pred cCCCeEEEEcCCcC---HHHHHHHHhCCCceEEE-EeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------
Q 020307 160 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVA-LDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------- 227 (328)
Q Consensus 160 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g-~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------- 227 (328)
..|+++|-.|.+.| ..+..|++.|. +|+. .+.+++.++.+.+.+... ..++.++.+|+.+..
T Consensus 4 L~GK~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~----g~~~~~~~~D~~~~~~v~~~~~~ 77 (259)
T d1ja9a_ 4 LAGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKL----GAQGVAIQADISKPSEVVALFDK 77 (259)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHc----CCCceEecCCCCCHHHHHHHHHH
Confidence 46889998887665 46667777776 7776 466777778877777765 357889999986532
Q ss_pred --CCCCccceEEeccccccCCCh-------------------HHHHHHHHhcccCCcEEEEEEe
Q 020307 228 --FASGFVDAVHAGAALHCWPSP-------------------SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 228 --~~~~~fD~i~~~~vl~h~~d~-------------------~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
..-+..|+++.+..+.+..+. ....+.+.+.++.+|.+++...
T Consensus 78 ~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s 141 (259)
T d1ja9a_ 78 AVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS 141 (259)
T ss_dssp HHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred HHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccc
Confidence 123579999988777655432 2356777888888777666543
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.59 E-value=0.41 Score=39.24 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=70.8
Q ss_pred CCeE-EEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----------
Q 020307 162 GGLL-VDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 227 (328)
Q Consensus 162 ~~~v-LDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------- 227 (328)
|++| |--|++.|- .+..|++.+ ..+|+..+.+++.++.+.+.++.. ..++.++.+|+.+..
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~-g~~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dvs~~~sv~~~~~~~~ 76 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLF-SGDVVLTARDVTRGQAAVQQLQAE----GLSPRFHQLDIDDLQSIRALRDFLR 76 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHS-SSEEEEEESSHHHHHHHHHHHHHT----TCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEEEecCCHHHHHHHHHHHH
Confidence 5667 444555542 344555552 349999999999999988888765 457889999997643
Q ss_pred CCCCccceEEeccccccCC---C----------------hHHHHHHHHhcccCCcEEEEEEe
Q 020307 228 FASGFVDAVHAGAALHCWP---S----------------PSNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h~~---d----------------~~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
-.-+.+|+++.+..+.+.. + +..+.+.+...|+++|+++....
T Consensus 77 ~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS 138 (275)
T d1wmaa1 77 KEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS 138 (275)
T ss_dssp HHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred HhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 0125799999887664321 1 11356778888899998777653
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=91.50 E-value=0.25 Score=37.52 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=62.3
Q ss_pred CCCeEEEEcC--CcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC--CCC-CCCCCccce
Q 020307 161 QGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL-PFASGFVDA 235 (328)
Q Consensus 161 ~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~l-p~~~~~fD~ 235 (328)
++.+||--|. |.|.++.++++.. +.+|+++.-+++-.+.+++. .....+...|. ... ....+.+|+
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~l--------Gad~vi~~~~~~~~~~~~~~~~gvd~ 93 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQL--------GASEVISREDVYDGTLKALSKQQWQG 93 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHH--------TCSEEEEHHHHCSSCCCSSCCCCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHhh--------cccceEeccchhchhhhcccCCCceE
Confidence 4556887774 3477888888873 45999999998888877764 22222222222 111 123456888
Q ss_pred EEeccccccCCChHHHHHHHHhcccCCcEEEEEEecc
Q 020307 236 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 272 (328)
Q Consensus 236 i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 272 (328)
|+-. +. ...+.+..+.|+|+|++++.-...
T Consensus 94 vid~-----vg--g~~~~~~~~~l~~~G~iv~~G~~~ 123 (167)
T d1tt7a2 94 AVDP-----VG--GKQLASLLSKIQYGGSVAVSGLTG 123 (167)
T ss_dssp EEES-----CC--THHHHHHHTTEEEEEEEEECCCSS
T ss_pred EEec-----Cc--HHHHHHHHHHhccCceEEEeeccC
Confidence 7643 32 346889999999999998876544
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=91.30 E-value=0.78 Score=37.00 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=71.0
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C----
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 228 (328)
+++++|--|++.|- .+..|++.|. +|+.+|.+++.++.+.+.+.... ..++.++.+|+.+.. +
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY---GVETMAFRCDVSNYEEVKKLLEAVK 78 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH---CCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh---CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 57899999988763 5667777776 99999999988877766654432 457888899986632 0
Q ss_pred -CCCccceEEeccccccCCCh-------------------HHHHHHHHhcccC--CcEEEEEEe
Q 020307 229 -ASGFVDAVHAGAALHCWPSP-------------------SNAVAEISRILRS--GGVFVGTTF 270 (328)
Q Consensus 229 -~~~~fD~i~~~~vl~h~~d~-------------------~~~l~~~~r~Lkp--gG~l~i~~~ 270 (328)
.-+.+|+++.+..+.+.... -.+.+.+.+.|+. +|.++....
T Consensus 79 ~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S 142 (251)
T d1vl8a_ 79 EKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGS 142 (251)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccccccccccccc
Confidence 12579999987665443221 1345677777743 566666553
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.73 E-value=0.79 Score=35.07 Aligned_cols=93 Identities=11% Similarity=-0.001 Sum_probs=56.7
Q ss_pred CCeEEEEc--CCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CCCCccc
Q 020307 162 GGLLVDVS--CGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FASGFVD 234 (328)
Q Consensus 162 ~~~vLDiG--cG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~~fD 234 (328)
+.+||-.| .|.|.++.++++......+++++.+++......+.+ ....++...-+.+. .....+|
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~--------gad~vi~~~~~~~~~~~~~~~~~GvD 102 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL--------GFDAAVNYKTGNVAEQLREACPGGVD 102 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS--------CCSEEEETTSSCHHHHHHHHCTTCEE
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc--------cceEEeeccchhHHHHHHHHhccCce
Confidence 47899877 456899999999753336777777766555444321 11122222111111 1134589
Q ss_pred eEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 235 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 235 ~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+|+-.- . ...++...+.|+++|+++..-
T Consensus 103 vv~D~v-----G--g~~~~~~~~~l~~~G~iv~~G 130 (187)
T d1vj1a2 103 VYFDNV-----G--GDISNTVISQMNENSHIILCG 130 (187)
T ss_dssp EEEESS-----C--HHHHHHHHTTEEEEEEEEEC-
T ss_pred EEEecC-----C--chhHHHHhhhccccccEEEec
Confidence 987432 2 356889999999999998753
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=90.62 E-value=0.97 Score=36.38 Aligned_cols=104 Identities=16% Similarity=0.118 Sum_probs=69.1
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 227 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------- 227 (328)
.++.+|-.|.+.|- .+..|++.|. +|+.+|.+++.++.+.+.+... ..++.++.+|+.+..
T Consensus 9 enKvalITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~----g~~~~~~~~Dvt~~~~v~~~~~~~~ 82 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSF----GYESSGYAGDVSKKEEISEVINKIL 82 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 57788888877652 3444555555 9999999999999888888764 347888999987632
Q ss_pred CCCCccceEEeccccccCCCh-------------------HHHHHHHHhcc--cCCcEEEEEEe
Q 020307 228 FASGFVDAVHAGAALHCWPSP-------------------SNAVAEISRIL--RSGGVFVGTTF 270 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h~~d~-------------------~~~l~~~~r~L--kpgG~l~i~~~ 270 (328)
-.-+.+|+++.+..+.+.... -...+.+.+.+ +.+|.++....
T Consensus 83 ~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS 146 (251)
T d2c07a1 83 TEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISS 146 (251)
T ss_dssp HHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECC
Confidence 112679999987665443211 12345555555 35687776553
|
| >d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Zinc beta-ribbon family: Transcriptional factor domain domain: RBP9 subunit of RNA polymerase II species: Archaeon Thermococcus celer [TaxId: 2264]
Probab=90.29 E-value=0.054 Score=33.36 Aligned_cols=39 Identities=21% Similarity=0.374 Sum_probs=23.0
Q ss_pred cCcccccCCCchhhc---cCCCCccccccccCceeeCCCCcccc
Q 020307 58 GDLFSCPICYEPLIR---KGPTGLTLGAIYRSGFKCRKCDKTYS 98 (328)
Q Consensus 58 ~~~l~CP~C~~~l~~---~~~~~~~~~~~~~~~~~C~~C~~~~~ 98 (328)
+..+.||.|++.-.. ..-. +-++-+.-.+.|.+|++.+.
T Consensus 13 t~~~~CpkC~~~~a~~~~~QtR--saDE~~T~fy~C~~Cg~~wr 54 (57)
T d1qypa_ 13 TTKITCPKCGNDTAYWWEMQTR--AGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp EEECCCTTTCCSEEEEEEECCS--SSSCSSEEEEEESSSCCEEE
T ss_pred cccCCCCCCCCCceEEEEeecc--cccCCCeEEEEeCCCCCcce
Confidence 345789999984211 1111 11222335789999999874
|
| >d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Zn-binding ribosomal proteins family: Ribosomal protein L37ae domain: Ribosomal protein L37ae species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=89.76 E-value=0.047 Score=35.21 Aligned_cols=30 Identities=23% Similarity=0.627 Sum_probs=21.8
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
..+.||.|+..-..... .+++.|..|+..+
T Consensus 26 ~ky~Cp~Cgk~~vkR~a---------~GIW~C~kC~~~~ 55 (73)
T d1vqoz1 26 EDHACPNCGEDRVDRQG---------TGIWQCSYCDYKF 55 (73)
T ss_dssp SCBCCSSSSCSCEEEEE---------TTEEEETTTCCEE
T ss_pred CCccCCCCCCceeEEEE---------EEEEECCCCCCEE
Confidence 45789999985433222 2799999998876
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.74 E-value=0.57 Score=37.88 Aligned_cols=85 Identities=15% Similarity=0.216 Sum_probs=61.0
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 227 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------- 227 (328)
+|+.+|--|++.|- .+..|++.|. +|+.+|.+++.++.+.+.+..... ..++.++.+|+.+..
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFE--PQKTLFIQCDVADQQQLRDTFRKVV 77 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSC--GGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcC--CCcEEEEEeecCCHHHHHHHHHHHH
Confidence 46788888987763 5566667776 999999999988888777654321 347888999987642
Q ss_pred CCCCccceEEeccccccCCChH
Q 020307 228 FASGFVDAVHAGAALHCWPSPS 249 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h~~d~~ 249 (328)
-.-+.+|+++.+..+....+.+
T Consensus 78 ~~~G~iDilVnnAg~~~~~~~~ 99 (254)
T d2gdza1 78 DHFGRLDILVNNAGVNNEKNWE 99 (254)
T ss_dssp HHHSCCCEEEECCCCCCSSSHH
T ss_pred HHcCCcCeecccccccccccch
Confidence 0125799999887776665543
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.67 E-value=0.81 Score=36.78 Aligned_cols=79 Identities=18% Similarity=0.170 Sum_probs=61.5
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 227 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------- 227 (328)
.|+.+|--|++.|- ++..|++.|. +|+.+|.+++.++...+.+... ..++..+.+|+.+..
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~i~ 79 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGL----GAKVHTFVVDCSNREDIYSSAKKVK 79 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 57889999988874 6777778876 9999999999998888887764 457889999987642
Q ss_pred CCCCccceEEeccccccC
Q 020307 228 FASGFVDAVHAGAALHCW 245 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h~ 245 (328)
-..+..|+++.+..+.+.
T Consensus 80 ~~~g~idilinnag~~~~ 97 (244)
T d1yb1a_ 80 AEIGDVSILVNNAGVVYT 97 (244)
T ss_dssp HHTCCCSEEEECCCCCCC
T ss_pred HHcCCCceeEeecccccc
Confidence 124578999988776554
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=89.38 E-value=1.2 Score=31.61 Aligned_cols=90 Identities=11% Similarity=0.043 Sum_probs=50.9
Q ss_pred eEEEEcCCc-CH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC----CCCccceEE
Q 020307 164 LLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDAVH 237 (328)
Q Consensus 164 ~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~i~ 237 (328)
+++=+|+|. |. +...|.+.+. +|+.+|.+++.++.+++ .....+.+|..+... .-...|.++
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g~--~vvvid~d~~~~~~~~~----------~~~~~~~gd~~~~~~l~~a~i~~a~~vi 69 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMGH--EVLAVDINEEKVNAYAS----------YATHAVIANATEENELLSLGIRNFEYVI 69 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC--CCEEEESCHHHHHHTTT----------TCSEEEECCTTCTTHHHHHTGGGCSEEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCC--eEEEecCcHHHHHHHHH----------hCCcceeeecccchhhhccCCccccEEE
Confidence 455566653 32 3334444555 89999999999887753 244567788866431 113467665
Q ss_pred eccccccCCCh-HHHHHHHHhcccCCcEEEEEE
Q 020307 238 AGAALHCWPSP-SNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 238 ~~~vl~h~~d~-~~~l~~~~r~LkpgG~l~i~~ 269 (328)
+... .+. ...+-.+.+.+.|...++...
T Consensus 70 ~~~~----~~~~~~~~~~~~~~~~~~~~iiar~ 98 (134)
T d2hmva1 70 VAIG----ANIQASTLTTLLLKELDIPNIWVKA 98 (134)
T ss_dssp ECCC----SCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred EEcC----chHHhHHHHHHHHHHcCCCcEEeec
Confidence 4321 122 233444444555666766654
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=89.35 E-value=2.9 Score=31.46 Aligned_cols=94 Identities=14% Similarity=0.076 Sum_probs=59.9
Q ss_pred CCCeEEEEcCC--cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEec-C-CCCCCCCCccceE
Q 020307 161 QGGLLVDVSCG--SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-V-CRLPFASGFVDAV 236 (328)
Q Consensus 161 ~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-~-~~lp~~~~~fD~i 236 (328)
++.+||-.|.. .|.++.++++.. +.+|+++.-+++..+.+++.- -..++.-+ . ..-.+....+|.|
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~~lG---------ad~vi~~~~~~~~~~l~~~~~~~v 100 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKSLG---------ASRVLPRDEFAESRPLEKQVWAGA 100 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHT---------EEEEEEGGGSSSCCSSCCCCEEEE
T ss_pred CCCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHHhhc---------cccccccccHHHHHHHHhhcCCee
Confidence 34577766633 466888888874 569999999998888776531 11222211 1 1112344567876
Q ss_pred EeccccccCCChHHHHHHHHhcccCCcEEEEEEec
Q 020307 237 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 237 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
+ +.+. ...+.+..+.|+++|+++..-..
T Consensus 101 v-----D~Vg--g~~~~~~l~~l~~~Griv~~G~~ 128 (177)
T d1o89a2 101 I-----DTVG--DKVLAKVLAQMNYGGCVAACGLA 128 (177)
T ss_dssp E-----ESSC--HHHHHHHHHTEEEEEEEEECCCT
T ss_pred E-----EEcc--hHHHHHHHHHhccccceEeeccc
Confidence 4 3332 34688999999999999987544
|
| >d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Zn-binding ribosomal proteins family: Ribosomal protein L37ae domain: Ribosomal protein L37ae species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=89.28 E-value=0.053 Score=34.95 Aligned_cols=30 Identities=17% Similarity=0.517 Sum_probs=21.4
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
....||.|+..-..... .+++.|..|+..+
T Consensus 26 ~ky~Cp~Cgk~~vkR~a---------~GIW~C~kC~~~~ 55 (73)
T d1jj2y_ 26 KKHKCPVCGFKKLKRAG---------TGIWMCGHCGYKI 55 (73)
T ss_dssp SCBCCSSSCCSCEEEEE---------TTEEEETTTCCEE
T ss_pred CCccCCCCCCCceEEEE---------EEEEECCCCCCEE
Confidence 45789999974333222 2799999998876
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.08 E-value=1 Score=36.11 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=55.6
Q ss_pred cCCCeEEEEcCCcC---HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC------CCC
Q 020307 160 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FAS 230 (328)
Q Consensus 160 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~~ 230 (328)
..|+++|-.|++.| ..+..|++.|. +|+.+|.+++.++...+. ..++..+..|+.+.. -.-
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~--------~~~~~~~~~Dv~d~~~v~~~~~~~ 74 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRE--------CPGIEPVCVDLGDWEATERALGSV 74 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--------STTCEEEECCTTCHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHh--------cCCCeEEEEeCCCHHHHHHHHHHh
Confidence 36889999998876 35677777776 999999999888776654 456778888986532 123
Q ss_pred CccceEEeccccccC
Q 020307 231 GFVDAVHAGAALHCW 245 (328)
Q Consensus 231 ~~fD~i~~~~vl~h~ 245 (328)
+++|+++.+..+.+.
T Consensus 75 g~iDilVnnAg~~~~ 89 (244)
T d1pr9a_ 75 GPVDLLVNNAAVALL 89 (244)
T ss_dssp CCCCEEEECCCCCCC
T ss_pred CCceEEEeccccccc
Confidence 679999987665444
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=88.91 E-value=1.6 Score=35.38 Aligned_cols=105 Identities=18% Similarity=0.218 Sum_probs=72.1
Q ss_pred cCCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCC-HHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------
Q 020307 160 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFS-ENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------- 227 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s-~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------- 227 (328)
.+|+++|-.|++.|- .+..|++.|. +|+..|.+ ++.++...+.+... ..++.++.+|+.+..
T Consensus 16 L~gK~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~----g~~~~~~~~D~~~~~~v~~~~~~ 89 (272)
T d1g0oa_ 16 LEGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKN----GSDAACVKANVGVVEDIVRMFEE 89 (272)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhh----CCceeeEeCCCCCHHHHHHHHHH
Confidence 357899999988763 6667777776 89999876 55666666666654 457888999986632
Q ss_pred --CCCCccceEEeccccccCCCh-------------------HHHHHHHHhcccCCcEEEEEEe
Q 020307 228 --FASGFVDAVHAGAALHCWPSP-------------------SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 228 --~~~~~fD~i~~~~vl~h~~d~-------------------~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
-.-+..|+++.+......... ....+.+.+.|+.+|..++...
T Consensus 90 ~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s 153 (272)
T d1g0oa_ 90 AVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS 153 (272)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred HHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccc
Confidence 112578999887665444321 2356788888888887776653
|
| >d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: YfgJ-like family: YfgJ-like domain: Hypothetical protein YfgJ species: Escherichia coli [TaxId: 562]
Probab=88.75 E-value=0.083 Score=33.55 Aligned_cols=26 Identities=27% Similarity=0.713 Sum_probs=18.9
Q ss_pred ccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
+.||.|+.+|...+ +.+.|..|+..|
T Consensus 3 ~~CP~C~~eL~~~~-----------~~~~C~~C~~~~ 28 (71)
T d2jnea1 3 LHCPQCQHVLDQDN-----------GHARCRSCGEFI 28 (71)
T ss_dssp CBCSSSCSBEEEET-----------TEEEETTTCCEE
T ss_pred CcCCCccCcccccC-----------CCEehhhhhhhh
Confidence 57999999986644 467777776655
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=88.69 E-value=1.6 Score=34.75 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=67.7
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 227 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------- 227 (328)
+++++|--|.+.|- .+..|++.|. +|+..|.+++.++...+.+. .+...+.+|+.+..
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~~~~ 73 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLG-------ANGKGLMLNVTDPASIESVLEKIR 73 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHG-------GGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhC-------CCCcEEEEEecCHHHhhhhhhhhh
Confidence 47788888877663 5666677776 99999999998887776653 35677888986532
Q ss_pred CCCCccceEEeccccccCCCh-------------------HHHHHHHHhccc--CCcEEEEEEe
Q 020307 228 FASGFVDAVHAGAALHCWPSP-------------------SNAVAEISRILR--SGGVFVGTTF 270 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h~~d~-------------------~~~l~~~~r~Lk--pgG~l~i~~~ 270 (328)
-.-+..|+++.+....+.... -...+.+.+.|+ .+|.++....
T Consensus 74 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS 137 (243)
T d1q7ba_ 74 AEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGS 137 (243)
T ss_dssp HHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred cccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecc
Confidence 112579999987655444321 124566666663 4687776553
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=88.42 E-value=0.11 Score=42.31 Aligned_cols=107 Identities=17% Similarity=0.109 Sum_probs=70.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhC----------------------------------------CCceEEEEeCCHHHHHH
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSG----------------------------------------TYSGVVALDFSENMLRQ 200 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~----------------------------------------~~~~v~g~D~s~~~~~~ 200 (328)
.+..++|-=||+|.++..++-.. ....++|.|+++.+++.
T Consensus 50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~ 129 (249)
T d1o9ga_ 50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 129 (249)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence 34579999999999988776521 01246799999999998
Q ss_pred HH---HHHHhcCcCCCCCeEEEEecCCCCC-C----CCCccceEEecccc-ccCC----Ch----HHHHHHHHhcccCCc
Q 020307 201 CY---DFIKQDNTILTSNLALVRADVCRLP-F----ASGFVDAVHAGAAL-HCWP----SP----SNAVAEISRILRSGG 263 (328)
Q Consensus 201 a~---~~~~~~~~~~~~~i~~~~~d~~~lp-~----~~~~fD~i~~~~vl-~h~~----d~----~~~l~~~~r~LkpgG 263 (328)
|+ .++...++ ...+.+...|+.+.. . .....++|+++==- |-+. .+ ..+...+.+++....
T Consensus 130 A~~~r~n~~~Agl--~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s 207 (249)
T d1o9ga_ 130 ARRLRERLTAEGG--ALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHA 207 (249)
T ss_dssp HHHHHHHHHHTTS--SCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHcCC--CceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCc
Confidence 84 56777765 678999999986532 1 23457899987221 2221 12 345556777776555
Q ss_pred EEEEEE
Q 020307 264 VFVGTT 269 (328)
Q Consensus 264 ~l~i~~ 269 (328)
.++++.
T Consensus 208 ~~~it~ 213 (249)
T d1o9ga_ 208 VIAVTD 213 (249)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 555544
|
| >d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Zinc beta-ribbon family: Transcriptional factor domain domain: Transcription initiation factor TFIIB, N-terminal domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.14 E-value=0.098 Score=31.22 Aligned_cols=30 Identities=27% Similarity=0.542 Sum_probs=20.5
Q ss_pred cccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
...||.|++.....+. ..+.+.|.+||.+.
T Consensus 5 ~~~Cp~Cgs~~iv~D~--------~~Ge~vC~~CG~Vi 34 (50)
T d1pfta_ 5 QKVCPACESAELIYDP--------ERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEET--------TTTEEEESSSCCBC
T ss_pred cccCcCCCCCcEEEEC--------CCCeEecccCCcEe
Confidence 3469999986443322 23789999998753
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=87.83 E-value=0.85 Score=37.50 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=58.8
Q ss_pred cCCCeEEEEcCCcC---HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---------
Q 020307 160 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------- 227 (328)
Q Consensus 160 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------- 227 (328)
.+|+++|-.|++.| ..+..|++.|. +|+.+|.+...++.+.+.+.... ..++.++.+|+.+..
T Consensus 23 l~gK~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~~---g~~~~~~~~D~~~~~~v~~~~~~~ 97 (294)
T d1w6ua_ 23 FQGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT---GNKVHAIQCDVRDPDMVQNTVSEL 97 (294)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH---SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhc---CCceEEEEecccChHHHHHHhhhh
Confidence 46889999998876 36667777776 99999999988877776665432 457788889986532
Q ss_pred -CCCCccceEEeccccccC
Q 020307 228 -FASGFVDAVHAGAALHCW 245 (328)
Q Consensus 228 -~~~~~fD~i~~~~vl~h~ 245 (328)
...+..|+++.+....+.
T Consensus 98 ~~~~g~iDilvnnAg~~~~ 116 (294)
T d1w6ua_ 98 IKVAGHPNIVINNAAGNFI 116 (294)
T ss_dssp HHHTCSCSEEEECCCCCCC
T ss_pred hhhccccchhhhhhhhccc
Confidence 123678999987665444
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=87.81 E-value=0.49 Score=41.18 Aligned_cols=52 Identities=10% Similarity=0.117 Sum_probs=42.5
Q ss_pred ccccCCCeEEEEcCCcCHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHHHHhc
Q 020307 157 FKSAQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQD 208 (328)
Q Consensus 157 l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~ 208 (328)
+...++..++|||+-.|.++..++... ...+|+++|+++...+..++++...
T Consensus 208 ~~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n 261 (395)
T d2py6a1 208 LRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY 261 (395)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHT
T ss_pred cCcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 456678899999999999888776542 2358999999999999999887654
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.60 E-value=4.5 Score=33.75 Aligned_cols=153 Identities=12% Similarity=0.180 Sum_probs=85.8
Q ss_pred hccccCCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcC------------------cCCCCCeE
Q 020307 156 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN------------------TILTSNLA 217 (328)
Q Consensus 156 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~------------------~~~~~~i~ 217 (328)
++...+...|+-+|||.=.....+....++..++=+|. ++.++.=++.+.... .....+..
T Consensus 91 Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~ 169 (328)
T d1rjda_ 91 FLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYK 169 (328)
T ss_dssp HHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEE
T ss_pred HHHHCCCcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeE
Confidence 44445566899999999877777766666555666665 333333222222100 00145788
Q ss_pred EEEecCCCCC---------CCCCccceEEeccccccCCCh--HHHHHHHHhcccCCcEEEEEEeccCC-CCcchhhHHHH
Q 020307 218 LVRADVCRLP---------FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT-SSTSLTGRVLR 285 (328)
Q Consensus 218 ~~~~d~~~lp---------~~~~~fD~i~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~-~~~~~~~~~~~ 285 (328)
++.+|+.++. +.....-++++-.|+.+++.. .++++.+.+..+ +|.+++.++.... +..++ ++.+.
T Consensus 170 lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~~~~p~D~F-G~~M~ 247 (328)
T d1rjda_ 170 LAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIGGSQPNDRF-GAIMQ 247 (328)
T ss_dssp EEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCCCSTTCCH-HHHHH
T ss_pred EEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCCCCCCCChH-HHHHH
Confidence 8999987643 122233467777888888643 467777777664 5667777776321 22333 33332
Q ss_pred Hhh--------hccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 286 ERI--------LQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 286 ~~~--------~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
... +....+.+.+....-+ .|+..+.
T Consensus 248 ~nl~~~r~~~l~~~~~~~t~~~~~~r~--~~~~~~~ 281 (328)
T d1rjda_ 248 SNLKESRNLEMPTLMTYNSKEKYASRW--SAAPNVI 281 (328)
T ss_dssp HHHHHHHCCCCTTTTTTCSHHHHHGGG--TTSSEEE
T ss_pred HHHHHhcCCCCCccccCCCHHHHHHHH--hcCCccc
Confidence 211 1233455666555444 3665544
|
| >d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Zinc beta-ribbon family: Transcriptional factor domain domain: RBP9 subunit of RNA polymerase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.98 E-value=0.19 Score=32.31 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=22.9
Q ss_pred cccccCCCchhhc-cCCCCccccccccCceeeCCCCccccC
Q 020307 60 LFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (328)
Q Consensus 60 ~l~CP~C~~~l~~-~~~~~~~~~~~~~~~~~C~~C~~~~~~ 99 (328)
...||.|++.-.. .....-+.+.-+.-.+.|.+|++.+..
T Consensus 23 ~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~ 63 (72)
T d1twfi2 23 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTS 63 (72)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEEC
T ss_pred CCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCccc
Confidence 4689999984211 000111122334457899999998844
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=86.97 E-value=1.2 Score=33.07 Aligned_cols=129 Identities=11% Similarity=0.031 Sum_probs=71.2
Q ss_pred ccCCCeEEEEcCCc-CH-HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCCCCccceE
Q 020307 159 SAQGGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 236 (328)
Q Consensus 159 ~~~~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~i 236 (328)
...+.+||=||.|. |. .+..|...+. .+++.+.-+.+-.+...+.+ +.. ..++.++.-.-..+|+|
T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~-~~i~v~nRt~~ka~~l~~~~---------~~~--~~~~~~~~~~l~~~Div 88 (159)
T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGV-RAVLVANRTYERAVELARDL---------GGE--AVRFDELVDHLARSDVV 88 (159)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHCC-SEEEEECSSHHHHHHHHHHH---------TCE--ECCGGGHHHHHHTCSEE
T ss_pred CcccCeEEEECCCHHHHHHHHHHHhcCC-cEEEEEcCcHHHHHHHHHhh---------hcc--cccchhHHHHhccCCEE
Confidence 34678999999864 33 3445555553 36888888865444333322 111 22333333112479999
Q ss_pred Eecccccc-CCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHH
Q 020307 237 HAGAALHC-WPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS 306 (328)
Q Consensus 237 ~~~~vl~h-~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 306 (328)
++.-.-.+ +-+. ..++...+.-+.+..+++.+...+....+.+.+ ......++.+++..+.++
T Consensus 89 i~atss~~~ii~~-~~i~~~~~~r~~~~~~~iiDlavPr~vd~~v~~------~~~v~l~~ld~l~~~~~~ 152 (159)
T d1gpja2 89 VSATAAPHPVIHV-DDVREALRKRDRRSPILIIDIANPRDVEEGVEN------IEDVEVRTIDDLRVIARE 152 (159)
T ss_dssp EECCSSSSCCBCH-HHHHHHHHHCSSCCCEEEEECCSSCSBCTTGGG------STTEEEEEHHHHHHHHHH
T ss_pred EEecCCCCccccH-hhhHHHHHhcccCCCeEEEeecCCCCcChhhhc------cCCeEEEeHHHHHHHHHH
Confidence 98765333 2223 345555544455566777776555444433221 134566788888877654
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=86.89 E-value=1.7 Score=34.85 Aligned_cols=101 Identities=17% Similarity=0.130 Sum_probs=67.3
Q ss_pred CCCeEEEEcCCcC---HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----------
Q 020307 161 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 227 (328)
Q Consensus 161 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------- 227 (328)
+++++|--|++.| ..+..|++.|. +|+..|.+++.++...+.+ ..+..++.+|+.+..
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~~~~~~~~~~ 75 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAEL-------GERSMFVRHDVSSEADWTLVMAAVQ 75 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHH-------CTTEEEECCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHh-------CCCeEEEEeecCCHHHHHHHHHHHH
Confidence 5778898887766 25666677776 9999999998887776654 346677888886532
Q ss_pred CCCCccceEEeccccccCCC-----h--------------HHHHHHHHhccc-CCcEEEEEEe
Q 020307 228 FASGFVDAVHAGAALHCWPS-----P--------------SNAVAEISRILR-SGGVFVGTTF 270 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h~~d-----~--------------~~~l~~~~r~Lk-pgG~l~i~~~ 270 (328)
-.-+..|+++.+..+.+..+ . -...+.+.+.|+ .+|.++....
T Consensus 76 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS 138 (253)
T d1hxha_ 76 RRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMAS 138 (253)
T ss_dssp HHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred HHhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccc
Confidence 01257899998766543221 1 124566667775 4787766554
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=86.38 E-value=1.5 Score=35.44 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=57.3
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 227 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------- 227 (328)
+++++|-.|.+.|- .+..|++.|. +|+.+|.+++.++.+.+.+... ..++..+.+|+.+..
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREK----GVEARSYVCDVTSEEAVIGTVDSVV 77 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTT----TSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 57899999987763 5667777776 9999999999999888888764 347888899986632
Q ss_pred CCCCccceEEecccc
Q 020307 228 FASGFVDAVHAGAAL 242 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl 242 (328)
-.-+..|+++.+...
T Consensus 78 ~~~g~iDilVnnaG~ 92 (260)
T d1zema1 78 RDFGKIDFLFNNAGY 92 (260)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHhCCCCeehhhhcc
Confidence 012578999976543
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=86.34 E-value=1.3 Score=35.69 Aligned_cols=106 Identities=14% Similarity=0.162 Sum_probs=68.1
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCC-HHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C---
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFS-ENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F--- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s-~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~--- 228 (328)
+++++|--|++.|- .+..|++.|. +|+..|.+ .+.++.+.+.+.... ..++.++.+|+.+.. +
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~ 77 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH---GVKVLYDGADLSKGEAVRGLVDNA 77 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH---TSCEEEECCCTTSHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHHhc---CCcEEEEECCCCCHHHHHHHHHHH
Confidence 57788888877763 5666777776 99999986 556666665554332 457888999987642 0
Q ss_pred --CCCccceEEeccccccCCCh-------------------HHHHHHHHhcccC--CcEEEEEEec
Q 020307 229 --ASGFVDAVHAGAALHCWPSP-------------------SNAVAEISRILRS--GGVFVGTTFL 271 (328)
Q Consensus 229 --~~~~fD~i~~~~vl~h~~d~-------------------~~~l~~~~r~Lkp--gG~l~i~~~~ 271 (328)
.-+..|+++.+..+.+.... ....+.+.+.++. +|.++.....
T Consensus 78 ~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~ 143 (260)
T d1x1ta1 78 VRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASA 143 (260)
T ss_dssp HHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred HHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccc
Confidence 12579999987665443221 1244666666654 5777765543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=86.23 E-value=1.4 Score=35.46 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=58.7
Q ss_pred CCCeEEEEcCCcC---HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----------
Q 020307 161 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 227 (328)
Q Consensus 161 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------- 227 (328)
+++++|-.|++.| ..+..|++.|. +|+.+|.+++.++.+.+.+... ...+.++.+|+.+..
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~----~~~~~~~~~D~s~~~~~~~~~~~~~ 78 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREK----GLNVEGSVCDLLSRTERDKLMQTVA 78 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCCceEEEeecCCHHHHHHHHHHHH
Confidence 5889999998876 35667777776 9999999999988888887765 457788889986532
Q ss_pred -CCCCccceEEeccccccC
Q 020307 228 -FASGFVDAVHAGAALHCW 245 (328)
Q Consensus 228 -~~~~~fD~i~~~~vl~h~ 245 (328)
.-.+..|+++.+..+.+.
T Consensus 79 ~~~~g~idilinnag~~~~ 97 (258)
T d1ae1a_ 79 HVFDGKLNILVNNAGVVIH 97 (258)
T ss_dssp HHTTSCCCEEEECCCCCCC
T ss_pred HHhCCCcEEEecccccccc
Confidence 113568888876555443
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=86.20 E-value=2.9 Score=34.48 Aligned_cols=127 Identities=15% Similarity=0.088 Sum_probs=76.8
Q ss_pred CCCeEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC-CCccceEEec
Q 020307 161 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAG 239 (328)
Q Consensus 161 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~i~~~ 239 (328)
.+.+|||+=||-|.+...|.+.|. ..+.++|+++.+++.-+.+... . ..+|+.++... -..+|+++..
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~-~~v~a~e~d~~a~~~~~~N~~~-----~-----~~~Di~~~~~~~~~~~Dll~gg 78 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGE-----K-----PEGDITQVNEKTIPDHDILCAG 78 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSC-----C-----CBSCGGGSCGGGSCCCSEEEEE
T ss_pred CCCeEEEECccccHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHCCC-----C-----CcCchhcCchhhcceeeeeecc
Confidence 567999999999999999998874 3467899999999988877532 1 24677665422 2368888865
Q ss_pred cccccC---------CChH----HHHHHHHhcccCCcEEEEEEeccCCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHH
Q 020307 240 AALHCW---------PSPS----NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS 306 (328)
Q Consensus 240 ~vl~h~---------~d~~----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 306 (328)
.-..-+ .|+. ..+-++.+.++|. +++.+.... .... ...-..+.+...|++
T Consensus 79 pPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~--~~~lENV~~--~~~~------------~~~~~~~~i~~~l~~ 142 (327)
T d2c7pa1 79 FPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKN--FASH------------DNGNTLEVVKNTMNE 142 (327)
T ss_dssp CCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGG--GGTG------------GGGHHHHHHHHHHHH
T ss_pred cccchhhhhhhhcCCcccchhHHHHHHHHHhccCCc--EEecccchh--hhhh------------ccchhhHHhhhHHHh
Confidence 322111 2222 2233444556785 333332221 0000 011123567788999
Q ss_pred CCCeEEEE
Q 020307 307 CGLTNYTS 314 (328)
Q Consensus 307 ~Gf~~v~~ 314 (328)
.|+.+...
T Consensus 143 lGY~~~~~ 150 (327)
T d2c7pa1 143 LDYSFHAK 150 (327)
T ss_dssp TTBCCEEE
T ss_pred cCCcceee
Confidence 99976653
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=85.88 E-value=1.5 Score=36.01 Aligned_cols=67 Identities=18% Similarity=0.311 Sum_probs=50.9
Q ss_pred eEEEEcCCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCCC-CCccceEEecc
Q 020307 164 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGA 240 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~i~~~~ 240 (328)
+|||+=||-|.+..-+.+.|. ..+.++|+++...+.-+.+ .+ -.++.+|+.++... -..+|+++...
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~-~~~~a~e~d~~a~~~~~~N--------~~-~~~~~~Di~~~~~~~~~~~dll~~g~ 69 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESN--------HS-AKLIKGDISKISSDEFPKCDGIIGGP 69 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTC-EEEEEEECCHHHHHHHHHH--------CC-SEEEESCTTTSCGGGSCCCSEEEECC
T ss_pred eEEEeCcCcCHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHH--------CC-CCCccCChhhCCHhHcccccEEeecc
Confidence 699999999999999988874 3467999999888877665 32 35678899877532 23689998653
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=85.86 E-value=3.1 Score=32.94 Aligned_cols=102 Identities=23% Similarity=0.229 Sum_probs=68.8
Q ss_pred cCCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---------
Q 020307 160 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------- 227 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------- 227 (328)
.+++++|-.|++.|- .+..|++.|. +|+..+.+.+.++...+.+ ..++.++.+|+.+..
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dls~~~~i~~~~~~i 73 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAAL-------EAEAIAVVADVSDPKAVEAVFAEA 73 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTC-------CSSEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHc-------CCceEEEEecCCCHHHHHHHHHHH
Confidence 357899999988763 5666677776 9999999998776554432 456788899986532
Q ss_pred -CCCCccceEEeccccccCCCh-------------------HHHHHHHHhcccCCcEEEEEEe
Q 020307 228 -FASGFVDAVHAGAALHCWPSP-------------------SNAVAEISRILRSGGVFVGTTF 270 (328)
Q Consensus 228 -~~~~~fD~i~~~~vl~h~~d~-------------------~~~l~~~~r~LkpgG~l~i~~~ 270 (328)
-.-+.+|+++.+....+.... ..+.+.+...++.++.+++...
T Consensus 74 ~~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss 136 (241)
T d2a4ka1 74 LEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGS 136 (241)
T ss_dssp HHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred HHHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccc
Confidence 012579999987665544321 1245667777888777666544
|
| >d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Zinc beta-ribbon family: Transcriptional factor domain domain: Transcription initiation factor TFIIE-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.64 E-value=0.08 Score=33.08 Aligned_cols=40 Identities=20% Similarity=0.492 Sum_probs=23.5
Q ss_pred CcccCcccccCCCchhhccCCCCccccccccCceeeCCCCcc
Q 020307 55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (328)
Q Consensus 55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 96 (328)
......+.||.|+......+.. .+-....+.+.|..|+..
T Consensus 9 ~~~~~~y~Cp~C~~~ys~Lda~--~L~d~~~~~F~C~~C~~e 48 (62)
T d1vd4a_ 9 STNRASFKCPVCSSTFTDLEAN--QLFDPMTGTFRCTFCHTE 48 (62)
T ss_dssp CCSSSEEECSSSCCEEEHHHHH--HHEETTTTEEBCSSSCCB
T ss_pred cccCCceECCCCCCCcchhhHH--HhcCcCCCeEEecCCCCE
Confidence 3445679999999853221100 111112379999999764
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=85.63 E-value=1.4 Score=35.74 Aligned_cols=76 Identities=17% Similarity=0.288 Sum_probs=56.1
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C----
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 228 (328)
+++.+|-.|++.|- .+..|++.|. +|+.+|.+++.++.+.+.+.. ...+.++.+|+.+.. +
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGS-----PDVISFVHCDVTKDEDVRNLVDTTI 77 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCC-----TTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcC-----CCceEEEEccCCCHHHHHHHHHHHH
Confidence 57899999988763 4566667776 999999999988888777654 446788889986632 0
Q ss_pred -CCCccceEEeccccc
Q 020307 229 -ASGFVDAVHAGAALH 243 (328)
Q Consensus 229 -~~~~fD~i~~~~vl~ 243 (328)
.-+.+|+++.+..+.
T Consensus 78 ~~~g~iD~lVnnAG~~ 93 (268)
T d2bgka1 78 AKHGKLDIMFGNVGVL 93 (268)
T ss_dssp HHHSCCCEEEECCCCC
T ss_pred HHcCCcceeccccccc
Confidence 125789999776543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=84.67 E-value=1.2 Score=31.68 Aligned_cols=87 Identities=18% Similarity=0.069 Sum_probs=58.7
Q ss_pred CCcCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----CCCCccceEEeccccccC
Q 020307 170 CGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAVHAGAALHCW 245 (328)
Q Consensus 170 cG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~i~~~~vl~h~ 245 (328)
||.|..+..+++......++.+|.+++..+..+. .++.++.+|..+.. ..-...+.+++..
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~----- 70 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----------SGANFVHGDPTRVSDLEKANVRGARAVIVNL----- 70 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----------TTCEEEESCTTSHHHHHHTTCTTCSEEEECC-----
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----------cCccccccccCCHHHHHHhhhhcCcEEEEec-----
Confidence 4567888888887656689999999998876653 36788999986532 1224567777533
Q ss_pred CChH--HHHHHHHhcccCCcEEEEEEec
Q 020307 246 PSPS--NAVAEISRILRSGGVFVGTTFL 271 (328)
Q Consensus 246 ~d~~--~~l~~~~r~LkpgG~l~i~~~~ 271 (328)
++.. ..+....+.+.|...++....+
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~iia~~~~ 98 (129)
T d2fy8a1 71 ESDSETIHCILGIRKIDESVRIIAEAER 98 (129)
T ss_dssp SSHHHHHHHHHHHHHHCSSSCEEEECSS
T ss_pred cchhhhHHHHHHHHHHCCCceEEEEEcC
Confidence 2332 3345556778888877776643
|
| >d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain family: Methionyl-tRNA synthetase (MetRS), Zn-domain domain: Methionyl-tRNA synthetase (MetRS), Zn-domain species: Pyrococcus abyssi [TaxId: 29292]
Probab=84.42 E-value=0.3 Score=26.50 Aligned_cols=25 Identities=24% Similarity=0.733 Sum_probs=17.9
Q ss_pred cccCCCchhhccCCCCccccccccCceeeCCCCccccCc
Q 020307 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (328)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 100 (328)
.||.|+..-.. .-.|..||+.+-..
T Consensus 4 ~CP~C~~~~a~--------------GDqCe~CG~~~~p~ 28 (35)
T d1rqga3 4 TCPYCGAEDQK--------------GDQCEVCGRPLTPE 28 (35)
T ss_dssp BCSSSCCSCCC--------------TTTCSSSCCCCCTT
T ss_pred ECCCCCCCccc--------------CcchhhcCCccCHH
Confidence 59999876544 33599999887443
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=84.40 E-value=0.38 Score=37.08 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=55.0
Q ss_pred ccccCCCeEEEEcCC---cCHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEe---cCCCCC---
Q 020307 157 FKSAQGGLLVDVSCG---SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA---DVCRLP--- 227 (328)
Q Consensus 157 l~~~~~~~vLDiGcG---~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~---d~~~lp--- 227 (328)
....++.+||=+.+| .|..+..+++.. +.+++++--+.+..+...+.+++.+ .-.++.- +..++.
T Consensus 24 ~~~~~g~~vli~~ga~g~vG~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~~~~~~lG-----ad~vi~~~~~~~~~~~~~v 97 (189)
T d1gu7a2 24 VKLTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELG-----ATQVITEDQNNSREFGPTI 97 (189)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHT-----CSEEEEHHHHHCGGGHHHH
T ss_pred hCCCCCCEEEEEeCCCchHHHHHHHHHhhc-CCeEEEEEecccccchHHhhhhhcc-----ccEEEeccccchhHHHHHH
Confidence 345677788887433 356777777763 4488887444433333333333332 1122222 221110
Q ss_pred -----CCCCccceEEeccccccCCChHHHHHHHHhcccCCcEEEEEE
Q 020307 228 -----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 269 (328)
Q Consensus 228 -----~~~~~fD~i~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 269 (328)
-..+.+|+|+- .+. ...+....+.|+|+|+++..-
T Consensus 98 ~~~~~~~g~~vdvv~D-----~vg--~~~~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 98 KEWIKQSGGEAKLALN-----CVG--GKSSTGIARKLNNNGLMLTYG 137 (189)
T ss_dssp HHHHHHHTCCEEEEEE-----SSC--HHHHHHHHHTSCTTCEEEECC
T ss_pred HHHHhhccCCceEEEE-----CCC--cchhhhhhhhhcCCcEEEEEC
Confidence 01245788773 333 334678889999999998754
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.39 E-value=2.6 Score=33.45 Aligned_cols=74 Identities=23% Similarity=0.182 Sum_probs=53.1
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC------CCCC
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FASG 231 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~~~ 231 (328)
+|+++|-.|++.|- .+..|++.|. +|+.+|.+++.++...+. ..++..+..|+.+.. -.-+
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~--------~~~~~~~~~Dv~~~~~v~~~~~~~g 73 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKE--------CPGIEPVCVDLGDWDATEKALGGIG 73 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--------STTCEEEECCTTCHHHHHHHHTTCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHh--------cCCCeEEEEeCCCHHHHHHHHHHcC
Confidence 57899999987763 5666677776 999999998877666554 456778888986532 1126
Q ss_pred ccceEEecccccc
Q 020307 232 FVDAVHAGAALHC 244 (328)
Q Consensus 232 ~fD~i~~~~vl~h 244 (328)
..|+++.+..+.+
T Consensus 74 ~iDilVnnAg~~~ 86 (242)
T d1cyda_ 74 PVDLLVNNAALVI 86 (242)
T ss_dssp CCSEEEECCCCCC
T ss_pred CCeEEEECCcccc
Confidence 7999998765543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=84.33 E-value=3.5 Score=30.59 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=56.2
Q ss_pred CeEEEEcCCc-C-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecC---CCCCCCCCccceEE
Q 020307 163 GLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV---CRLPFASGFVDAVH 237 (328)
Q Consensus 163 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~---~~lp~~~~~fD~i~ 237 (328)
++|--||+|. | .++..|++.|. +|+.+|.++..++..++.-..... .+......... .++.-.-...|+|+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~aD~ii 77 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAE--GPGLAGTAHPDLLTSDIGLAVKDADVIL 77 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEE--SSSCCEEECCSEEESCHHHHHTTCSEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCCchh--hhhhhhhhhhhhhhhhhHhHhcCCCEEE
Confidence 5788899987 3 35666777776 999999999888777653211000 00011110000 00000013578888
Q ss_pred eccccccCCChHHHHHHHHhcccCCcEEEE
Q 020307 238 AGAALHCWPSPSNAVAEISRILRSGGVFVG 267 (328)
Q Consensus 238 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i 267 (328)
..-- -.....+++++...|+++..+++
T Consensus 78 i~v~---~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 78 IVVP---AIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp ECSC---GGGHHHHHHHHGGGCCTTCEEEE
T ss_pred EEEc---hhHHHHHHHHhhhccCCCCEEEE
Confidence 6421 11236789999999999886554
|
| >d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain family: Methionyl-tRNA synthetase (MetRS), Zn-domain domain: Methionyl-tRNA synthetase (MetRS), Zn-domain species: Escherichia coli [TaxId: 562]
Probab=84.12 E-value=0.21 Score=27.15 Aligned_cols=24 Identities=42% Similarity=0.905 Sum_probs=17.7
Q ss_pred cccCCCchhhccCCCCccccccccCceeeCCCCccccC
Q 020307 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (328)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 99 (328)
.||.|+..-.. .-.|..||+.|-.
T Consensus 4 ~CP~C~~~~a~--------------GDqCe~CG~~~~p 27 (35)
T d1pfva3 4 TCPKCKSPDQY--------------GDNCEVCGATYSP 27 (35)
T ss_dssp ECTTTCCSSEE--------------TTBCTTTCCBCCG
T ss_pred ECCCCCCcccc--------------cccHHHcCCcCCH
Confidence 59999886644 3359999998743
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=83.83 E-value=1.5 Score=35.67 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 227 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------- 227 (328)
+++++|-.|++.|- .+..|++.|. +|+.+|.+++.++.+.+.+...+.. ..++..+.+|+.+..
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~~-~~~~~~~~~Dvs~~~~v~~~~~~~~ 80 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVS-EKQVNSVVADVTTEDGQDQIINSTL 80 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCC-GGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCC-CCceEEEEccCCCHHHHHHHHHHHH
Confidence 57889999987763 5667777776 9999999999999988888765421 346889999986632
Q ss_pred CCCCccceEEecccc
Q 020307 228 FASGFVDAVHAGAAL 242 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl 242 (328)
-.-+..|+++.+...
T Consensus 81 ~~~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 81 KQFGKIDVLVNNAGA 95 (272)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHhCCceEEEeCCcc
Confidence 012578999977544
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=83.34 E-value=0.67 Score=37.54 Aligned_cols=83 Identities=13% Similarity=0.027 Sum_probs=48.3
Q ss_pred EEEEecCCCC--CCCCCccceEEeccc----c-------ccCCChHHHHHHHHhcccCCcEEEEEEeccCCCCcchhhHH
Q 020307 217 ALVRADVCRL--PFASGFVDAVHAGAA----L-------HCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV 283 (328)
Q Consensus 217 ~~~~~d~~~l--p~~~~~fD~i~~~~v----l-------~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~ 283 (328)
.++.+|..+. .++++++|+|+..== . +++......+.++.|+|||+|.+++.........
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~------- 78 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGE------- 78 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCC-------
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCcccccc-------
Confidence 4566664321 245778888886421 1 1111235678999999999999998664322100
Q ss_pred HHHhhhccCCCCCHHHHHHHHHHCCCeEEE
Q 020307 284 LRERILQNYNYLTEEEIEDLCTSCGLTNYT 313 (328)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~ll~~~Gf~~v~ 313 (328)
.........+..+++..||....
T Consensus 79 -------~~~~~~~~~~~~~~~~~~~~~~~ 101 (279)
T d1eg2a_ 79 -------AGSGDLISIISHMRQNSKMLLAN 101 (279)
T ss_dssp -------TTBCCHHHHHHHHHHHCCCEEEE
T ss_pred -------ccccchhhHHHHHHhccCceeee
Confidence 01112234456778889997655
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=83.06 E-value=0.83 Score=35.06 Aligned_cols=76 Identities=14% Similarity=0.075 Sum_probs=52.4
Q ss_pred cCCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC---CCCCcc
Q 020307 160 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFV 233 (328)
Q Consensus 160 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~f 233 (328)
.++++||-.|++.|- .+..|++.|. +|+.++.+++.++...+.+... .++.+...|..... -.-+..
T Consensus 21 l~gK~vlItGasgGIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~i 93 (191)
T d1luaa1 21 VKGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKR-----FKVNVTAAETADDASRAEAVKGA 93 (191)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHH-----HTCCCEEEECCSHHHHHHHTTTC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhhcc--chhhcccchHHHHHHHHHHHhc-----cchhhhhhhcccHHHHHHHhcCc
Confidence 468899999977653 5666777776 9999999999988887777652 24445666664321 112468
Q ss_pred ceEEecccc
Q 020307 234 DAVHAGAAL 242 (328)
Q Consensus 234 D~i~~~~vl 242 (328)
|+++.+..+
T Consensus 94 Dilin~Ag~ 102 (191)
T d1luaa1 94 HFVFTAGAI 102 (191)
T ss_dssp SEEEECCCT
T ss_pred CeeeecCcc
Confidence 999876543
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=82.46 E-value=0.96 Score=37.38 Aligned_cols=73 Identities=16% Similarity=0.275 Sum_probs=43.5
Q ss_pred eEEEEcCCcCHHHHHHH----HhCCCceEEEEe-CCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----CCCCcc
Q 020307 164 LLVDVSCGSGLFSRKFA----KSGTYSGVVALD-FSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FASGFV 233 (328)
Q Consensus 164 ~vLDiGcG~G~~~~~l~----~~~~~~~v~g~D-~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~~f 233 (328)
+||-.| |+|..+..+. +++. +|+++| ++..........+.. ..++.++.+|+.+.. +....+
T Consensus 2 KILVTG-atGfIGs~lv~~Ll~~g~--~V~~id~~~~~~~~~~~~~~~~-----~~~~~~i~~Di~~~~~l~~~~~~~~~ 73 (338)
T d1orra_ 2 KLLITG-GCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSS-----LGNFEFVHGDIRNKNDVTRLITKYMP 73 (338)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHT-----TCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred EEEEEC-CCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhHHHHhhc-----cCCcEEEEcccCCHHHHHHHHHhcCC
Confidence 678666 6787665554 4555 999998 332222111122222 568999999997632 223457
Q ss_pred ceEEecccccc
Q 020307 234 DAVHAGAALHC 244 (328)
Q Consensus 234 D~i~~~~vl~h 244 (328)
|+|+......+
T Consensus 74 d~Vih~aa~~~ 84 (338)
T d1orra_ 74 DSCFHLAGQVA 84 (338)
T ss_dssp SEEEECCCCCC
T ss_pred ceEEeeccccc
Confidence 99987665433
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=82.31 E-value=2.7 Score=33.69 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=58.2
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCCC---------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--------- 228 (328)
+++++|--|++.|- .+..|++.|. +|+.+|.+++.++.+.+.+...+. ..++..+.+|+.+..-
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~~~Dvt~~~~v~~~~~~~~ 78 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAP--DAEVLTTVADVSDEAQVEAYVTATT 78 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCT--TCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCC--CCeEEEEeccCCCHHHHHHHHHHHH
Confidence 57789999988763 6777777776 999999999998888777655432 4578888999866420
Q ss_pred -CCCccceEEeccccc
Q 020307 229 -ASGFVDAVHAGAALH 243 (328)
Q Consensus 229 -~~~~fD~i~~~~vl~ 243 (328)
.-+..|+++.+..+.
T Consensus 79 ~~~G~iDiLVnnAG~~ 94 (258)
T d1iy8a_ 79 ERFGRIDGFFNNAGIE 94 (258)
T ss_dssp HHHSCCSEEEECCCCC
T ss_pred HHhCCCCEEEECCccc
Confidence 125799999876543
|
| >d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Rubredoxin-like family: Rubredoxin domain: Rubredoxin species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]
Probab=82.15 E-value=0.28 Score=28.36 Aligned_cols=37 Identities=11% Similarity=0.357 Sum_probs=20.1
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCcc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~ 96 (328)
..+.|.+|+--.......+..+..+. ..+.|+.|+..
T Consensus 2 ~~y~C~~CgyiYd~~~Gdgt~Fe~LP-~dw~CP~C~a~ 38 (45)
T d6rxna_ 2 QKYVCNVCGYEYDPAEHDNVPFDQLP-DDWCCPVCGVS 38 (45)
T ss_dssp CCEEETTTCCEECGGGGTTCCGGGSC-TTCBCTTTCCB
T ss_pred CCeEeCCCCeEECcccCCCCCHHHCC-CCCCCcCCCCc
Confidence 45789999764322111122233332 47889999753
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=81.87 E-value=2.5 Score=33.93 Aligned_cols=105 Identities=12% Similarity=0.157 Sum_probs=71.3
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC--------C-
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------F- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~- 228 (328)
+++++|--|++.|- .+..|++.|. +|+..|.+++.++.+.+.+... ..++.++.+|+.+.. .
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSK----GFKVEASVCDLSSRSERQELMNTVA 80 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCCceEEEeeCCCHHHHHHHHHHHH
Confidence 57899999987763 5666777776 9999999999998888887664 457788889986532 0
Q ss_pred -C-CCccceEEeccccccCCCh-------------------HHHHHHHHhcc--cCCcEEEEEEec
Q 020307 229 -A-SGFVDAVHAGAALHCWPSP-------------------SNAVAEISRIL--RSGGVFVGTTFL 271 (328)
Q Consensus 229 -~-~~~fD~i~~~~vl~h~~d~-------------------~~~l~~~~r~L--kpgG~l~i~~~~ 271 (328)
. .+..|+++.+..+.+.... -...+.+.+.+ +.+|.++.....
T Consensus 81 ~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~ 146 (259)
T d2ae2a_ 81 NHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSV 146 (259)
T ss_dssp HHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCG
T ss_pred HHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccc
Confidence 1 2368999987665443321 12345566655 346777665543
|
| >d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: IBR domain domain: Ring finger protein 31 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.37 E-value=0.55 Score=30.12 Aligned_cols=30 Identities=20% Similarity=0.524 Sum_probs=22.4
Q ss_pred CcccccCCCchhhccCCCCccccccccCceeeCCCCccc
Q 020307 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (328)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~ 97 (328)
+.-.||.|+..+....+. ..+.|+.|+..|
T Consensus 17 ~~k~CP~C~~~~~~~~~~---------~~~~C~~C~~~f 46 (73)
T d2ct7a1 17 KFLWCAQCSFGFIYEREQ---------LEATCPQCHQTF 46 (73)
T ss_dssp CEECCSSSCCCEECCCSC---------SCEECTTTCCEE
T ss_pred CCCCCCCCCCEeEECCCC---------CEEEcCCCCCeE
Confidence 567799999987654432 468899998877
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=81.15 E-value=3.8 Score=32.56 Aligned_cols=98 Identities=22% Similarity=0.222 Sum_probs=63.2
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C----
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 228 (328)
+|+++|--|++.|- .+..|++.|. +|+..|.+++..+.++.. +..++.+|+.+.. +
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~----------~~~~~~~Dv~~~~~v~~~~~~~~ 71 (248)
T d2d1ya1 4 AGKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAI----------GGAFFQVDLEDERERVRFVEEAA 71 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHH----------TCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc----------CCeEEEEeCCCHHHHHHHHHHHH
Confidence 57899999977763 5666777776 999999998876655432 3456788886632 0
Q ss_pred -CCCccceEEeccccccCCC-----h--------------HHHHHHHHhcccC--CcEEEEEEe
Q 020307 229 -ASGFVDAVHAGAALHCWPS-----P--------------SNAVAEISRILRS--GGVFVGTTF 270 (328)
Q Consensus 229 -~~~~fD~i~~~~vl~h~~d-----~--------------~~~l~~~~r~Lkp--gG~l~i~~~ 270 (328)
.-+..|+++.+..+.+... . -...+.+.+.|+. +|.++....
T Consensus 72 ~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS 135 (248)
T d2d1ya1 72 YALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVAS 135 (248)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred HhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccc
Confidence 1257899987755433211 1 1345677777754 577766554
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=81.08 E-value=2 Score=34.86 Aligned_cols=79 Identities=22% Similarity=0.251 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C----
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 228 (328)
+++++|--|++.|- .+..|++.|. +|+.+|.+++.++.+.+.+...+.. ..++..+.+|+.+.. +
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVP-AEKINAVVADVTEASGQDDIINTTL 79 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCC-GGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCC-CcceEEEEeeCCCHHHHHHHHHHHH
Confidence 57888988987763 5667777776 9999999999999888888765421 246889999987642 0
Q ss_pred -CCCccceEEecccc
Q 020307 229 -ASGFVDAVHAGAAL 242 (328)
Q Consensus 229 -~~~~fD~i~~~~vl 242 (328)
.-+..|+++.+...
T Consensus 80 ~~~G~iDilVnnAG~ 94 (274)
T d1xhla_ 80 AKFGKIDILVNNAGA 94 (274)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHcCCceEEEeeccc
Confidence 12578999987543
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.87 E-value=2.5 Score=33.93 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC-----C----
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 228 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 228 (328)
+++++|-.|++.|- .+..|++.|. +|+.+|.+++.++.+.+.+... ..++..+.+|+.+.. +
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKK----GFQVTGSVCDASLRPEREKLMQTVS 80 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCceEEEeccCCCHHHHHHHHHHHH
Confidence 57899999988764 6667777776 9999999999998888877664 457888999986532 0
Q ss_pred C--CCccceEEecccccc
Q 020307 229 A--SGFVDAVHAGAALHC 244 (328)
Q Consensus 229 ~--~~~fD~i~~~~vl~h 244 (328)
. .+..|+++.+..+.+
T Consensus 81 ~~~~g~idilvnnAG~~~ 98 (259)
T d1xq1a_ 81 SMFGGKLDILINNLGAIR 98 (259)
T ss_dssp HHHTTCCSEEEEECCC--
T ss_pred HHhCCCcccccccccccC
Confidence 1 257899998766544
|
| >d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Zinc-binding domain of translation initiation factor 2 beta superfamily: Zinc-binding domain of translation initiation factor 2 beta family: Zinc-binding domain of translation initiation factor 2 beta domain: Zinc-binding domain of translation initiation factor 2 beta species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=80.48 E-value=0.44 Score=26.17 Aligned_cols=33 Identities=30% Similarity=0.418 Sum_probs=20.7
Q ss_pred cccCCCchhhccCCCCccccccccCceeeCCCCccccCc
Q 020307 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (328)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~ 100 (328)
.|+.|+++...-.. .+ ..-.++|..||..-+.+
T Consensus 3 ~C~~C~spDT~l~k----e~--R~~~l~C~aCGa~r~V~ 35 (37)
T d1neea2 3 ICHECNRPDTRIIR----EG--RISLLKCEACGAKAPLK 35 (37)
T ss_dssp HHTCCSSCSSCCEE----ET--TTTEEECSTTSCCCCSC
T ss_pred ECCCCCCCCCEEEE----cC--CEEEEEeccCCCCcccc
Confidence 59999997432111 11 12478999999876543
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=80.39 E-value=2.3 Score=33.95 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=56.5
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 227 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------- 227 (328)
+++++|--|.+.|- .+..|++.|. +|+.+|.+++.++.+.+.+.. ..++.++.+|+.+..
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGT-----PDQIQFFQHDSSDEDGWTKLFDATE 77 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCC-----TTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 57888888877663 5666677776 999999999988888777643 457889999987642
Q ss_pred CCCCccceEEecccccc
Q 020307 228 FASGFVDAVHAGAALHC 244 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~h 244 (328)
-.-+..|+++.+..+.+
T Consensus 78 ~~~G~iDiLVnnAg~~~ 94 (251)
T d1zk4a1 78 KAFGPVSTLVNNAGIAV 94 (251)
T ss_dssp HHHSSCCEEEECCCCCC
T ss_pred HHhCCceEEEecccccc
Confidence 01257899998765543
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=80.18 E-value=2.4 Score=33.94 Aligned_cols=77 Identities=23% Similarity=0.274 Sum_probs=55.9
Q ss_pred CCCeEEEEcCCcCH---HHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEecCCCCC----------
Q 020307 161 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 227 (328)
Q Consensus 161 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------- 227 (328)
+++++|--|.+.|- .+..|++.|. +|+.+|.+++.++.+.+.+... ..++.++.+|+.+..
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~----g~~~~~~~~Dvs~~~~~~~~~~~~~ 83 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQL----GGQAFACRCDITSEQELSALADFAI 83 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 57888888876653 4455566665 9999999999998888887764 357888999987632
Q ss_pred CCCCccceEEeccccc
Q 020307 228 FASGFVDAVHAGAALH 243 (328)
Q Consensus 228 ~~~~~fD~i~~~~vl~ 243 (328)
-.-+..|+++.+..+.
T Consensus 84 ~~~g~iDilvnnAG~~ 99 (255)
T d1fmca_ 84 SKLGKVDILVNNAGGG 99 (255)
T ss_dssp HHHSSCCEEEECCCCC
T ss_pred HHcCCCCEeeeCCcCC
Confidence 0125799999876554
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.10 E-value=1.4 Score=37.61 Aligned_cols=74 Identities=22% Similarity=0.181 Sum_probs=42.7
Q ss_pred CCeEEEEcCCcCHHHHHHH----HhCCCceEEEEeCCHHHHHHHH----------------HHHHhcCcCCCCCeEEEEe
Q 020307 162 GGLLVDVSCGSGLFSRKFA----KSGTYSGVVALDFSENMLRQCY----------------DFIKQDNTILTSNLALVRA 221 (328)
Q Consensus 162 ~~~vLDiGcG~G~~~~~l~----~~~~~~~v~g~D~s~~~~~~a~----------------~~~~~~~~~~~~~i~~~~~ 221 (328)
|++||-.| |+|..+..+. +.|. +|+++|.......... .+..... ..++.++.+
T Consensus 1 g~kILVTG-atGfiG~~lv~~Ll~~g~--~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~ 74 (393)
T d1i24a_ 1 GSRVMVIG-GDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT---GKSIELYVG 74 (393)
T ss_dssp -CEEEEET-TTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH---CCCCEEEES
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCcC--EEEEEecCCcccccccccccccccccchHHHHHHHHhhc---CCCcEEEEc
Confidence 56888888 5787665554 4566 9999994221111110 1111100 467899999
Q ss_pred cCCCCC-----CCCCccceEEeccc
Q 020307 222 DVCRLP-----FASGFVDAVHAGAA 241 (328)
Q Consensus 222 d~~~lp-----~~~~~fD~i~~~~v 241 (328)
|+.+.. +....+|+|+-...
T Consensus 75 Dl~d~~~l~~~~~~~~~d~ViHlAa 99 (393)
T d1i24a_ 75 DICDFEFLAESFKSFEPDSVVHFGE 99 (393)
T ss_dssp CTTSHHHHHHHHHHHCCSEEEECCS
T ss_pred cCCCHHHHHHHHHhhcchheecccc
Confidence 997643 23335788886554
|