Citrus Sinensis ID: 020339

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
Protein Sequence
MRMSANRIDSHGDDNMAMDYSGTLSSNPGDSKSWNWQGEEFCLQKGSNFDMSGSQFNEVILNEEDLSYMLDDETTPVKSCGDLAYQATHSGKMSKDPKEHRETYSQAKRRRMLQFDPQVLDSSLCCDEMPSAFQKSNEREDSVEEVLPGVSQWTTGLSGLSASNCDGLDSFEGWIAECLNDPEMTFTPDDMHRNFSEASDIQIDISEFCNSTNSLPTCNTNVVQQQVTRTPRNVVFKGRKSLLRTPTKLASSVAYPFAFIKPCGIHGDVTLNDINQRIHSPGSKTKQNIDDPSAYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTKG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHcccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccEEEEEEEEccccccccccHHHHHHHHcccccccccccccccccccccccccccEEEEEEEccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccEcccccccccEcccccccccccccccccHHHHHcccccccccccccccccHcccccccccHHcccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccHHcccccccccHHHHcccccccccccccccccccccHHHHHHHHHHHccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccHHHHHHHHHccccccccccccccccccccccccEEEEEEEEEccccccEEEEEEccc
Coil and Loop (DISEMBL)
mrmsanridshgddnmamdysgtlssnpgdskswnwqgeefclqkgsnfdmsgsqfnevilneedlsymlddettpvkscgdlayqathsgkmskdpkehrETYSQAKRRRMlqfdpqvldsslccdempsafqksneredsveevlpgvsqwttglsglsasncdgldsFEGWIAEclndpemtftpddmhrnfseasdiqIDISefcnstnslptcntnvvqqqvtrtprnvvfkgrksllrtptklassvaypfafikpcgihgdvtlndinqrihspgsktkqniddpsayptsafsgkpvvgktkihteggkgsITIMRTKG
Flexible Loop (DISEMBL)
mrmsanridshgddnmaMDYSGTLSSNPGDSKSWNWQGEEFCLQKGSNFDMSGSQFNEVILNEEDLSYMLDDETTPVKSCGDLAYQAthsgkmskdpkeHRETYSQAKRRRMLQFDPQVLDSSLCCDEMPSAFQKSNEREDSVEEVLPGVSQWTTGLSGLSASNCDGLDSFEGWIAECLNDPEMTFTPDDMHRNFSEASDIQIDISEFCNSTNSLPTCNTNvvqqqvtrtprnvvfkgrksllrtptklassvAYPFAFIKPCGIHGDVTLNDINQRIhspgsktkqniddpsayptsafsgkpvvgktkihteggkgsitimrtkg
Low Complexity Region (SEG)
MRMSANRIDSHGDDNMAMDYSGTLSSNPGDSKSWNWQGEEFCLQKGSNFDMSGSQFNEVILNEEDLSYMLDDETTPVKSCGDLAYQATHSGKMSKDPKEHRETYSQAKRRRMLQFDPQVLDSSLCCDEMPSAFQKSNEREDSVEEVLPGVSQWTTGLSGLSASNCDGLDSFEGWIAECLNDPEMTFTPDDMHRNFSEASDIQIDISEFCNSTNSLPTCNTNVVQQQVTRTPRNVVFKGRKSLLRTPTKLASSVAYPFAFIKPCGIHGDVTLNDINQRIHSPGSKTKQNIDDPSAYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTKG
Disordered region (IsUnstruct)
*********************************WNWQGEEFCLQKGSNFDMSGSQFNEVILNEEDLSYMLD***************************************************************************LPGVSQWTTGLSGLSASNCDGLDSFEGWIAECLNDPEMTFT*******F*EASDIQIDISEFCNSTNSLPTCNTNVVQQQVTRTPRNVVFKGRKSLLRTPTKLASSVAYPFAFIKPCGIHGDVTLNDIN****************************************************
Disordered Region (DISOPRED)
***********GDDNMAMDYSGTLSSNPGDSKSWNWQGEEFCLQKGSNFDMSGSQFNEVILNEEDLSYMLDDETTPVKSCGDLAYQATH******************KRRRMLQFDP**************************EEVLPGVSQWT*****LSASNCDGLDSFEGWIAECL************************************************************************SVAYPFAFIKPCGIHGDVTLNDINQR***********************SGKPVVGKTKIHTEGGKGSITIMRTK*
Disordered Region (DISEMBL)
********DSHGDDNMAMDYSGTLSSNPGDSKSWNWQGEEFCLQKGSNFDMSGSQFNEVILNEEDLSYMLDDETTPVKSCGDLAYQAT******************AKRRRMLQFDPQVLDSSLCCDEMPSA**************LPGVSQWTTGLSGLSASNCDGLDSFEGWIAECLNDPEMTFTPDDMHRNFSEASDIQIDISEFCNSTNSLPTCNTNVVQQQVTRTPRNVVFKGRKSLLRTPTKLASSVAYPFAFIKPCGIHGDVTLNDINQRIHSPGSKTKQNIDDPSAYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTKG
Disordered Region (DISPRO)
************DDNMAMDYSGTLSSNPGDSKSWNWQGEEFCLQKGSNFDMSGSQFNEVILNEEDLSYMLDDETTPVKSCGDLAYQATHSGKMSK*******TY*QAKRRRMLQFDP**************************EE*LPGVSQWTTGLSGLSASNCDGLDSFEGWIAECLNDPEMTFTPDDM********************************************************KLASSVAYPFAFIKPCGIHGDVTLNDINQRIHSPGSKTKQNIDDPSAYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTKG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRMSANRIDSHGDDNMAMDYSGTLSSNPGDSKSWNWQGEEFCLQKGSNFDMSGSQFNEVILNEEDLSYMLDDETTPVKSCGDLAYQATHSGKMSKDPKEHRETYSQAKRRRMLQFDPQVLDSSLCCDEMPSAFQKSNEREDSVEEVLPGVSQWTTGLSGLSASNCDGLDSFEGWIAECLNDPEMTFTPDDMHRNFSEASDIQIDISEFCNSTNSLPTCNTNVVQQQVTRTPRNVVFKGRKSLLRTPTKLASSVAYPFAFIKPCGIHGDVTLNDINQRIHSPGSKTKQNIDDPSAYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTKG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	327	2.2.26 [Sep-21-2011]
Q6NLW5	300	Protein XRI1 OS=Arabidops	yes	no	0.883	0.963	0.526	3e-75

>sp|Q6NLW5|XRI1_ARATH Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2

 Score =  282 bits (721), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 158/300 (52%), Positives = 201/300 (67%), Gaps = 11/300 (3%)

Query: 31  SKSWNWQGEEFCLQKGSNF-DMSGSQFNEVILNEEDLSYMLDDETTPVKSCGDLAYQATH 89
           S SWNWQ + +  Q  S+F D+      EV LN+ED SYM DDE TPVK+C +L Y  T 
Sbjct: 9   SSSWNWQVDNYNHQPQSHFSDVPDCTMTEVTLNQEDHSYMFDDENTPVKACSELGYHVT- 67

Query: 90  SGKMSKDPKEHRETYSQAKRRRMLQFDPQVLDSSLCCDEMPSAFQKSNEREDSVEEVLPG 149
           +   ++  + H ET S  KRRRMLQF+ Q  ++SL   E  SA  KS+ R+D+ +E+LP 
Sbjct: 68  TEDTNRKMEVHSETRSALKRRRMLQFEDQP-ETSLFSSESFSAILKSSARDDTFDELLPE 126

Query: 150 VSQWTTGLS-GLSASNCDGLDSF-EGWIAECLNDPEMTFTPDDMHRNFSEASDIQIDISE 207
            SQ   G S   SAS+ +GLD + E W A+CLND E    PDD+  NF  + D+Q+DISE
Sbjct: 127 GSQLIEGFSEDASASSFEGLDLYAEEWYADCLNDAETPMLPDDL--NFG-SPDVQVDISE 183

Query: 208 FCNSTNSLPTCNTNVVQQQVTRTPRNVVFKGRKSLLRTPTKLASSVAYPFAFIKPCGIHG 267
           + N     P   T  VQ+ VTR+  NV+FKGRKS  R  +KL SS+ YPFAFIKPCG+HG
Sbjct: 184 YLNVP---PETETREVQRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHG 240

Query: 268 DVTLNDINQRIHSPGSKTKQNIDDPSAYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTKG 327
            +TL DINQ+I +P +K K +I++P+   TSAFSGKPVVGKTKI TEGGKGSITIMRT+G
Sbjct: 241 GMTLKDINQKIRNPPAKPKAHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 300

Required for mitotic division of the generative cell nucleus and the development of mature tricellular pollen grains, and for male and female meiosis.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
255560125	293	conserved hypothetical protein [Ricinus	0.828	0.924	0.655	6e-98
224069822	280	predicted protein [Populus trichocarpa]	0.828	0.967	0.627	6e-89
356559041	309	PREDICTED: protein XRI1-like [Glycine ma	0.920	0.974	0.556	1e-86
449453276	304	PREDICTED: protein XRI1-like [Cucumis sa	0.880	0.947	0.576	3e-83
356506666	327	PREDICTED: LOW QUALITY PROTEIN: protein	0.862	0.862	0.567	2e-81
356527366	302	PREDICTED: protein XRI1-like [Glycine ma	0.905	0.980	0.518	3e-80
363808040	298	uncharacterized protein LOC100791247 [Gl	0.902	0.989	0.520	9e-78
147771043	320	hypothetical protein VITISV_010925 [Viti	0.785	0.803	0.583	7e-75
238481516	300	protein XRI1 [Arabidopsis thaliana] gi|2	0.883	0.963	0.526	2e-73
297792063	266	hypothetical protein ARALYDRAFT_494937 [	0.807	0.992	0.536	2e-69

>gi|255560125|ref|XP_002521080.1| conserved hypothetical protein [Ricinus communis] gi|223539649|gb|EEF41231.1| conserved hypothetical protein [Ricinus communis]

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 192/293 (65%), Positives = 220/293 (75%), Gaps = 22/293 (7%)

Query: 50  DMSGSQFNEVILNEEDLSYMLDDETTPVKSCGDLAYQATHSGKMSKDPKEHRETYSQAKR 109
           D+S   +NEV LNEEDLSYMLD ETTPVK+CGDLAY   HS  M K+P+EHRET SQ KR
Sbjct: 8   DVSECLWNEVTLNEEDLSYMLD-ETTPVKACGDLAYHVNHSDNMHKEPEEHRETSSQLKR 66

Query: 110 RRMLQFDPQVLDSSLCCDEMPSAFQKSN-----------EREDSVEEVLPGVSQWTTGLS 158
           RRMLQFD Q  DS LC +E+ S F +SN           EREDS+EEVLP  S W  G S
Sbjct: 67  RRMLQFDTQAADSPLCHEEISSVFLQSNATVNVFVTYVQEREDSLEEVLPQASDWVPGFS 126

Query: 159 G-LSASNCDGLD-SFEGWIAECLNDPEMTFTPDDMHRNFSEASDIQIDISEFCNSTNSLP 216
             +SAS+ + LD S EGW+A+C ND EM  +P+DM  NF  A D+QIDISEFCN     P
Sbjct: 127 ADVSASSYEALDHSSEGWLADCFNDTEMGLSPNDM--NFPGACDVQIDISEFCNG----P 180

Query: 217 TCN-TNVVQQQVTRTPRNVVFKGRKSLLRTPTKLASSVAYPFAFIKPCGIHGDVTLNDIN 275
             N  + VQ+++TRTPRNV+FKG+KS +RTPTKLASSV YPFAFIKPCG HGDVTL DIN
Sbjct: 181 LGNEAHAVQKRITRTPRNVIFKGKKSFIRTPTKLASSVVYPFAFIKPCGFHGDVTLKDIN 240

Query: 276 QRIHS-PGSKTKQNIDDPSAYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTKG 327
           Q+I + P SK KQN +DP+AYPTSAFSGKPVVGKTKI TEGGKGSITIMRTKG
Sbjct: 241 QKIRTPPPSKLKQNEEDPAAYPTSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069822|ref|XP_002303048.1| predicted protein [Populus trichocarpa] gi|222844774|gb|EEE82321.1| predicted protein [Populus trichocarpa]

 Score =  333 bits (854), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 180/287 (62%), Positives = 210/287 (73%), Gaps = 16/287 (5%)

Query: 50  DMSGSQFNEVILNEEDLSYMLDDETTPVKSCGDLAYQATHSG-------KMSKDPKEHRE 102
           D+S   +NEV LN EDLSYMLD ETTPVK+C DLAY   H G        M+K+P+E RE
Sbjct: 1   DVSQRLWNEVTLNGEDLSYMLD-ETTPVKACADLAYHVNHDGMVLWMSDNMNKEPEERRE 59

Query: 103 TYSQAKRRRMLQFDPQVLDSSLCCDEMPSAFQKSNEREDSVEEVLPGVSQWTTGLSGLSA 162
           T  Q KRRR LQFD  + DS  C +++ S F KSNE E+S+EEV P  SQW +G   +SA
Sbjct: 60  TCFQFKRRR-LQFDTHLADSPFCDEDLTSVFLKSNETEESLEEVFPQASQWDSGYQDMSA 118

Query: 163 SNCDGLD-SFEGWIAECLNDPEMTFTPDDMHRNFSEASDIQIDISEFCNSTNSLPTCNTN 221
           S  +GLD S + WIA+C ND  M F+P+DM  NF  ASDIQIDIS+FCN     P    +
Sbjct: 119 SCYNGLDPSSDPWIADCFNDSGMHFSPNDM--NFPGASDIQIDISDFCNDP---PEFEAS 173

Query: 222 VVQQQVTRTPRNVVFKGRKSLLRTPTKLASSVAYPFAFIKPCGIHGDVTLNDINQRIHS- 280
            VQ+ V RTPRNVVFKG KS ++TPTKLA+SVAYPFAFIKPCG+HGDVTLN+INQRI + 
Sbjct: 174 TVQKCVPRTPRNVVFKGTKSFIQTPTKLATSVAYPFAFIKPCGVHGDVTLNEINQRIRTP 233

Query: 281 PGSKTKQNIDDPSAYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTKG 327
           P SK+KQ  +DP  YP SAFSGKPVVGKTKI TEGGKGSITIMRTKG
Sbjct: 234 PPSKSKQKDEDPVVYPMSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559041|ref|XP_003547810.1| PREDICTED: protein XRI1-like [Glycine max]

 Score =  325 bits (834), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 177/318 (55%), Positives = 224/318 (70%), Gaps = 17/318 (5%)

Query: 18  MDYSGTLSSNPGDSKSWNWQGEEFCLQKGSNFDMSGSQFNEVILNEEDLSYMLDDETTPV 77
           MDY+   +++ G  + W+WQG+++ L++  +F++S   +N+V  NEEDLSYMLDDETTPV
Sbjct: 1   MDYN---NNDHGAREPWDWQGKKYSLRRTFDFEISEELWNDVPQNEEDLSYMLDDETTPV 57

Query: 78  KSCGDLAYQATHSGKMSKDPKEHRETYSQAKRRRMLQFDPQVLDSSLCCDEMPSAFQKSN 137
           K+CGDLAY   ++  M K+ +E RETYSQAKRRRMLQF+ Q  D SL  + M  ++ K N
Sbjct: 58  KACGDLAYNVNNADNMQKELEECRETYSQAKRRRMLQFNSQESDQSLSNEGMSLSYLK-N 116

Query: 138 EREDSVEEVLPGVSQWTTG-----LSGLSASNCDGLDSFEGWIAECLNDPEMTFTPDDMH 192
            +ED V+E+ P VSQW +G     L   SAS+   L+S E W+A+  ND EM  +P+++ 
Sbjct: 117 GKEDPVKEIFPEVSQWVSGASDFTLGNASASDYVDLESTETWLADYFNDAEMDISPEEL- 175

Query: 193 RNFSEASDIQIDISEFCNSTNSLPTCNTNVVQQ-QVTRTPRNVVFKGRKSLLRTPTKLAS 251
             FS A D+QID +E        P+   NVVQQ  + RT RN++FKGRKS +  PTKLAS
Sbjct: 176 -KFSVADDVQIDGTEVSAIK---PSREQNVVQQTHIPRTTRNIIFKGRKSFIHMPTKLAS 231

Query: 252 SVAYPFAFIKPCGIHGDVTLNDINQRIHSPGS-KTKQ-NIDDPSAYPTSAFSGKPVVGKT 309
           SVAYPFAFIKP G HGDVTL +INQ I +P   K+KQ N DDPSAYP SAFSGKPVVGKT
Sbjct: 232 SVAYPFAFIKPSGAHGDVTLKEINQHIQTPPPLKSKQSNDDDPSAYPKSAFSGKPVVGKT 291

Query: 310 KIHTEGGKGSITIMRTKG 327
           KI TEGGKGSITI RTKG
Sbjct: 292 KIRTEGGKGSITITRTKG 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453276|ref|XP_004144384.1| PREDICTED: protein XRI1-like [Cucumis sativus] gi|449529551|ref|XP_004171763.1| PREDICTED: protein XRI1-like [Cucumis sativus]

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 174/302 (57%), Positives = 216/302 (71%), Gaps = 14/302 (4%)

Query: 33  SWNWQGEEFCLQKGSNFDMSGSQFNEVILNEEDLSYMLDDETTPVKSCGDLAYQATHSGK 92
           +WNW+G+ + +QK ++ ++S   ++ V  N  DLSY+ D ETTPVK+CGDLAY  T S  
Sbjct: 10  TWNWEGDGYTIQKDTDIEISECLWDGVSENG-DLSYVFD-ETTPVKACGDLAYHVTCSDD 67

Query: 93  MSKDPKEHRETYSQAKRRRMLQFDPQVLDSSLCCDEMPSAFQKSNEREDSVEEVLPGVSQ 152
            +K  +E RET+SQAKRRRMLQF  Q L++S+C +++ S F KS+ +  S    L  VS 
Sbjct: 68  RNKKSEESRETHSQAKRRRMLQFTAQDLETSICREDLSSRFLKSHNKVVSSPAALAEVSY 127

Query: 153 WTTGLSGLS----ASNCDGLD-SFEGWIAECLNDPEMTFTPDDMHRNFSEASDIQIDISE 207
                SGL+     S  + LD S EGWIAECLND +M  +P+D+  +F+  SDIQID+SE
Sbjct: 128 GIPECSGLADNVLISCHENLDHSPEGWIAECLNDADMHCSPEDL--SFAGTSDIQIDVSE 185

Query: 208 FCNSTNSLPTCNTNVVQQQVTRTPRNVVFKGRKSLLRTPTKLASSVAYPFAFIKPCGIHG 267
           FC+     P   +NVVQ   TR P N++FKGRKS +RTPTKLASSVAYPFAFIKPCG HG
Sbjct: 186 FCDGA---PEFKSNVVQHHPTRAPPNIIFKGRKSYIRTPTKLASSVAYPFAFIKPCGFHG 242

Query: 268 DVTLNDINQRIHS-PGSKTKQNIDDPS-AYPTSAFSGKPVVGKTKIHTEGGKGSITIMRT 325
           DVTL DINQRI + P SK K   +DPS +YPTSAFSGKPVVGKTKIHTEGGKGSITIMRT
Sbjct: 243 DVTLKDINQRIRTPPPSKLKHQPEDPSESYPTSAFSGKPVVGKTKIHTEGGKGSITIMRT 302

Query: 326 KG 327
           +G
Sbjct: 303 RG 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506666|ref|XP_003522097.1| PREDICTED: LOW QUALITY PROTEIN: protein XRI1-like [Glycine max]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 172/303 (56%), Positives = 211/303 (69%), Gaps = 21/303 (6%)

Query: 29  GDSKSWNWQGEEFCLQKGSNFDMSGSQFNEVILNEEDLSYMLDDETTPVKSCGDLAYQAT 88
           G  + W+W G+   L K ++F++S   +N+V  NEEDLSYMLDDETTPVK+CGDL     
Sbjct: 42  GAREPWDWHGKNISLGKTADFEISEELWNDVPQNEEDLSYMLDDETTPVKACGDL----- 96

Query: 89  HSGKMSKDPKEHRETYSQAKRRRMLQFDPQVLDSSLCCDEMPSAFQKSNEREDSVEEVLP 148
                  +P+E RETYSQ KRRRMLQF+ Q  D SL  +EM  ++ K N +ED V+E+ P
Sbjct: 97  -------EPEECRETYSQXKRRRMLQFNSQDSDQSLSNEEMSLSYLK-NGKEDPVKEIFP 148

Query: 149 GVSQWTTGLSG-LSASNCDGLDSFEGWIAECLNDPEMTFTPDDMHRNFSEASDIQIDISE 207
            VSQW +G SG  SAS+   L+S E W+A+  ND  M F+P+++  NFS A  +QID   
Sbjct: 149 EVSQWVSGASGNASASDYVDLESTETWLADYFNDAVMDFSPEEL--NFSVADGVQIDDGT 206

Query: 208 FCNSTNSLPTCNTNVVQQ-QVTRTPRNVVFKGRKSLLRTPTKLASSVAYPFAFIKPCGIH 266
             ++    P+   NVVQQ  V RT  N++FKGRKS +  PTKLASSVAYPFAFIKP G H
Sbjct: 207 EVSAIT--PSHEQNVVQQTHVPRTTCNIIFKGRKSFIHMPTKLASSVAYPFAFIKPSGAH 264

Query: 267 GDVTLNDINQRIHSPG-SKTKQNI-DDPSAYPTSAFSGKPVVGKTKIHTEGGKGSITIMR 324
           GDVTL +INQRI +P  SK+ Q+I DDPSAYP SAFSGKPVVGKTKI TEGGKGSITI R
Sbjct: 265 GDVTLKEINQRIQTPSPSKSNQSIDDDPSAYPKSAFSGKPVVGKTKIRTEGGKGSITITR 324

Query: 325 TKG 327
           TKG
Sbjct: 325 TKG 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527366|ref|XP_003532282.1| PREDICTED: protein XRI1-like [Glycine max]

 Score =  304 bits (779), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 164/316 (51%), Positives = 214/316 (67%), Gaps = 20/316 (6%)

Query: 18  MDYSGTLSSNPGDSKSWNWQGEEFCLQKGSNFDMSGSQFNEVILNEEDLSYMLDDETTPV 77
           MDYS        + + W+W  E++CLQ+  N+++S   +N V  NE DLS++ +DETTPV
Sbjct: 1   MDYSND------NKEPWDWHREDYCLQRSFNYEISPGIWNGVSQNE-DLSFVFNDETTPV 53

Query: 78  KSCGDLAYQATHSGKMS--KDPKEHRETYSQAKRRRMLQFDPQVLDSSLCCDEMPSAFQK 135
           K+CGD AY   +S   +  K+  +  ++  Q KRRRMLQF+ Q     L  ++M SA+ K
Sbjct: 54  KACGDFAYNVNNSESNNVQKESDKCLKSSYQIKRRRMLQFNSQDGGHLLSNEQMSSAYLK 113

Query: 136 SNEREDSVEEVLPGVSQWTTGLSG-LSASNCDGLDSFEGWIAECLNDPEMTFTPDDMHRN 194
              +E+  E+V P  SQW +G  G  SASN + L+S EGW+A+C  D EM   PDD+  N
Sbjct: 114 G--KEEPKEDVFPEFSQWVSGTPGSASASNYEDLESAEGWLADCFKDAEMQLCPDDL--N 169

Query: 195 FSEASDIQIDISEFCNSTNSLPTCNTNVVQQQVTRTPRNVVFKGRKSLLRTPTKLASSVA 254
           FS A ++Q+D+++  N     P C  NVVQ   T+TP+N++FKG KS + TPTKLA+SVA
Sbjct: 170 FSGADEVQVDVADLGNFP---PACEQNVVQHGFTQTPKNIIFKGGKSFIETPTKLAASVA 226

Query: 255 YPFAFIKPCGIHGDVTLNDINQRIHSPGSKTK---QNIDDPSAYPTSAFSGKPVVGKTKI 311
           YPFAFIKPCG HGDVTL +INQRI SP    K   Q+++DPSAYP SAFSGKPVVGKT+I
Sbjct: 227 YPFAFIKPCGAHGDVTLKEINQRILSPPPPLKSQQQSMEDPSAYPKSAFSGKPVVGKTRI 286

Query: 312 HTEGGKGSITIMRTKG 327
           H EGGKGSITIMRTKG
Sbjct: 287 HIEGGKGSITIMRTKG 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808040|ref|NP_001242722.1| uncharacterized protein LOC100791247 [Glycine max] gi|255647285|gb|ACU24109.1| unknown [Glycine max]

 Score =  296 bits (758), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 163/313 (52%), Positives = 215/313 (68%), Gaps = 18/313 (5%)

Query: 18  MDYSGTLSSNPGDSKSWNWQGEEFCLQKGSNFDMSGSQFNEVILNEEDLSYMLDDETTPV 77
           MDYS        + + W+W  E++CLQ+  +++ S   +N V  NE DLS + +DETTPV
Sbjct: 1   MDYSND------NKEPWDWHREDYCLQRSFDYENSQGLWNGVPQNE-DLSNVFNDETTPV 53

Query: 78  KSCGDLAYQATHSGKMSKDPKEHRETYSQAKRRRMLQFDPQVLDSSLCCDEMPSAFQKSN 137
           K+CGD AY   +S ++ K+  +  ++  Q KRRRMLQF+ Q     L  + M SA+ K  
Sbjct: 54  KACGDFAYNVNNS-ELQKESDKCLKSSDQIKRRRMLQFNTQDGGHFLSNEHMSSAYLKG- 111

Query: 138 EREDSVEEVLPGVSQWTTGLSGLSAS-NCDGLDSFEGWIAECLNDPEMTFTPDDMHRNFS 196
            +E+S E+V P +S W +G SG +++ N + L+S EGW+A+C  D EM   PDD+  NFS
Sbjct: 112 -KEESNEDVFPELSHWVSGASGSASASNYEDLESAEGWLADCFKDAEMQLCPDDL--NFS 168

Query: 197 EASDIQIDISEFCNSTNSLPTCNTNVVQQQVTRTPRNVVFKGRKSLLRTPTKLASSVAYP 256
            A  +QID+++ CN     P C  NV+Q  VT+TP+N+VFKG KS + TPTKLA+SVAYP
Sbjct: 169 GADAVQIDVADLCNFP---PACEQNVLQHHVTQTPKNIVFKGGKSFIETPTKLAASVAYP 225

Query: 257 FAFIKPCGIHGDVTLNDINQRIHSPGS--KTKQNIDDPSAYPTSAFSGKPVVGKTKIHTE 314
           F FIKPCG HGDVTL +INQRI SP    K++Q+++DPSAYP SAFSGKPVVGKTKIH E
Sbjct: 226 FTFIKPCGAHGDVTLKEINQRILSPPPPLKSQQSMEDPSAYPKSAFSGKPVVGKTKIHIE 285

Query: 315 GGKGSITIMRTKG 327
           GGKGSITIM TKG
Sbjct: 286 GGKGSITIMGTKG 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771043|emb|CAN65243.1| hypothetical protein VITISV_010925 [Vitis vinifera]

 Score =  286 bits (733), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 165/283 (58%), Positives = 196/283 (69%), Gaps = 26/283 (9%)

Query: 50  DMSGSQFNEVILNEEDLSYMLDDETTPVKSCGDLAYQATHSGKMSKDPKEHRETYSQAKR 109
           D+S   ++ V  NEEDLSYM D ETTPVK+CGDLAY  T  G ++     H     Q K 
Sbjct: 59  DISQCLWDGVTQNEEDLSYMFD-ETTPVKACGDLAYHVTDGGILAL----HCLPJLQLK- 112

Query: 110 RRMLQFDPQVLDSSLCCDEMPSAFQKSNEREDSVEEVLPGVSQWTTGL-SGLSASNCDGL 168
               ++ P  ++    C E       S ERE  VEE  P  SQW +G    +S S  +GL
Sbjct: 113 ----EWIPGNMNKETECKET-----CSQERESFVEETQPDASQWVSGFPENMSVSGYEGL 163

Query: 169 D-SFEGWIAECLNDPEMTFTPDDMHRNFSEASDIQIDISEFCNSTNSLPT-CNTNVVQQQ 226
           D S EGW+AEC ND EM F+PDDM  N SE SD+QID++EF N    +PT    N VQ++
Sbjct: 164 DKSSEGWLAECFNDAEMHFSPDDM--NLSEISDVQIDVTEFYN----IPTEYEANTVQER 217

Query: 227 VTRTPRNVVFKGRKSLLRTPTKLASSVAYPFAFIKPCGIHGDVTLNDINQRIHS-PGSKT 285
            TRTP+NV+FKGRKS +RTPTKLASSVAYPFAFIKPCG+HGDVTL DINQRI + P SK+
Sbjct: 218 ATRTPQNVIFKGRKSYMRTPTKLASSVAYPFAFIKPCGVHGDVTLKDINQRIRTPPPSKS 277

Query: 286 KQNIDDPS-AYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTKG 327
           +Q+ +DPS +YPTSAFSGKPVVGKTKI TEGGKGSITIMRTKG
Sbjct: 278 RQSNEDPSVSYPTSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238481516|ref|NP_001154770.1| protein XRI1 [Arabidopsis thaliana] gi|239977726|sp|Q6NLW5.2|XRI1_ARATH RecName: Full=Protein XRI1; AltName: Full=Protein X-RAY INDUCED 1 gi|332008333|gb|AED95716.1| protein XRI1 [Arabidopsis thaliana]

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 158/300 (52%), Positives = 201/300 (67%), Gaps = 11/300 (3%)

Query: 31  SKSWNWQGEEFCLQKGSNF-DMSGSQFNEVILNEEDLSYMLDDETTPVKSCGDLAYQATH 89
           S SWNWQ + +  Q  S+F D+      EV LN+ED SYM DDE TPVK+C +L Y  T 
Sbjct: 9   SSSWNWQVDNYNHQPQSHFSDVPDCTMTEVTLNQEDHSYMFDDENTPVKACSELGYHVT- 67

Query: 90  SGKMSKDPKEHRETYSQAKRRRMLQFDPQVLDSSLCCDEMPSAFQKSNEREDSVEEVLPG 149
           +   ++  + H ET S  KRRRMLQF+ Q  ++SL   E  SA  KS+ R+D+ +E+LP 
Sbjct: 68  TEDTNRKMEVHSETRSALKRRRMLQFEDQP-ETSLFSSESFSAILKSSARDDTFDELLPE 126

Query: 150 VSQWTTGLS-GLSASNCDGLDSF-EGWIAECLNDPEMTFTPDDMHRNFSEASDIQIDISE 207
            SQ   G S   SAS+ +GLD + E W A+CLND E    PDD+  NF  + D+Q+DISE
Sbjct: 127 GSQLIEGFSEDASASSFEGLDLYAEEWYADCLNDAETPMLPDDL--NFG-SPDVQVDISE 183

Query: 208 FCNSTNSLPTCNTNVVQQQVTRTPRNVVFKGRKSLLRTPTKLASSVAYPFAFIKPCGIHG 267
           + N     P   T  VQ+ VTR+  NV+FKGRKS  R  +KL SS+ YPFAFIKPCG+HG
Sbjct: 184 YLNVP---PETETREVQRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHG 240

Query: 268 DVTLNDINQRIHSPGSKTKQNIDDPSAYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTKG 327
            +TL DINQ+I +P +K K +I++P+   TSAFSGKPVVGKTKI TEGGKGSITIMRT+G
Sbjct: 241 GMTLKDINQKIRNPPAKPKAHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 300

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792063|ref|XP_002863916.1| hypothetical protein ARALYDRAFT_494937 [Arabidopsis lyrata subsp. lyrata] gi|297309751|gb|EFH40175.1| hypothetical protein ARALYDRAFT_494937 [Arabidopsis lyrata subsp. lyrata]

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 147/274 (53%), Positives = 186/274 (67%), Gaps = 10/274 (3%)

Query: 56  FNEVILNEEDLSYMLDDETTPVKSCGDLAYQATHSGKMSKDPKEHRETYSQAKRRRMLQF 115
             EV LN+ED SYM DDETTPVK+C +L Y  T +   ++  + H ET S  KRRRMLQF
Sbjct: 1   MTEVTLNQEDHSYMFDDETTPVKACSELGYHVT-TEDTNRKMEVHSETRSALKRRRMLQF 59

Query: 116 DPQVLDSSLCCDEMPSAFQKSNEREDSVEEVLPGVSQWTTGLS-GLSASNCDGLDSF-EG 173
           + Q  ++SL   E  SA  KS+ R+++ +E+LP  SQ   G S   SAS+ +GLD + E 
Sbjct: 60  EDQP-ETSLFSSESFSAILKSSARDETFDELLPEGSQLIEGFSEDASASSFEGLDLYAEE 118

Query: 174 WIAECLNDPEMTFTPDDMHRNFSEASDIQIDISEFCNSTNSLPTCNTNVVQQQVTRTPRN 233
           W AECLND E    PDD+      + D+Q+DISE+ N     P   T   Q+ VTR+  N
Sbjct: 119 WYAECLNDAETPMLPDDLSFG---SPDVQVDISEYLNVP---PETETREAQRPVTRSSPN 172

Query: 234 VVFKGRKSLLRTPTKLASSVAYPFAFIKPCGIHGDVTLNDINQRIHSPGSKTKQNIDDPS 293
           V+FKGRKS  R  +KL SS+ YPFAFIKPCG+HG +TL DINQ+I +P +K KQ+I++P+
Sbjct: 173 VIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRNPPAKPKQHIEEPA 232

Query: 294 AYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTKG 327
              TSAFSGKPVVGKTKI TEGGKGSITIMRT+G
Sbjct: 233 VIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 266

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
TAIR|locus:2156519	300	XRI1 "AT5G48720" [Arabidopsis	0.883	0.963	0.526	5.9e-73
TAIR|locus:2041110	213	AT2G01990 "AT2G01990" [Arabido	0.428	0.657	0.329	8.9e-14
TAIR|locus:2204538	226	AT1G14630 "AT1G14630" [Arabido	0.452	0.654	0.327	7.6e-10

TAIR|locus:2156519 XRI1 "AT5G48720" [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 158/300 (52%), Positives = 201/300 (67%)

Query:    31 SKSWNWQGEEFCLQKGSNF-DMSGSQFNEVILNEEDLSYMLDDETTPVKSCGDLAYQATH 89
             S SWNWQ + +  Q  S+F D+      EV LN+ED SYM DDE TPVK+C +L Y  T 
Sbjct:     9 SSSWNWQVDNYNHQPQSHFSDVPDCTMTEVTLNQEDHSYMFDDENTPVKACSELGYHVT- 67

Query:    90 SGKMSKDPKEHRETYSQAKRRRMLQFDPQVLDSSLCCDEMPSAFQKSNEREDSVEEVLPG 149
             +   ++  + H ET S  KRRRMLQF+ Q  ++SL   E  SA  KS+ R+D+ +E+LP 
Sbjct:    68 TEDTNRKMEVHSETRSALKRRRMLQFEDQP-ETSLFSSESFSAILKSSARDDTFDELLPE 126

Query:   150 VSQWTTGLS-GLSASNCDGLDSF-EGWIAECLNDPEMTFTPDDMHRNFSEASDIQIDISE 207
              SQ   G S   SAS+ +GLD + E W A+CLND E    PDD+  NF  + D+Q+DISE
Sbjct:   127 GSQLIEGFSEDASASSFEGLDLYAEEWYADCLNDAETPMLPDDL--NFG-SPDVQVDISE 183

Query:   208 FCNSTNSLPTCNTNVVQQQVTRTPRNVVFKGRKSLLRTPTKLASSVAYPFAFIKPCGIHG 267
             + N     P   T  VQ+ VTR+  NV+FKGRKS  R  +KL SS+ YPFAFIKPCG+HG
Sbjct:   184 YLNVP---PETETREVQRPVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHG 240

Query:   268 DVTLNDINQRIHSPGSKTKQNIDDPSAYPTSAFSGKPVVGKTKIHTEGGKGSITIMRTKG 327
              +TL DINQ+I +P +K K +I++P+   TSAFSGKPVVGKTKI TEGGKGSITIMRT+G
Sbjct:   241 GMTLKDINQKIRNPPAKPKAHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 300

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=IMP

GO:0007140 "male meiosis" evidence=IMP

GO:0007143 "female meiosis" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0010165 "response to X-ray" evidence=IEP

GO:0006302 "double-strand break repair" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2041110 AT2G01990 "AT2G01990" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 8.9e-14, Sum P(2) = 8.9e-14
 Identities = 52/158 (32%), Positives = 78/158 (49%)

Query:   178 CLNDPEMTFTPDDMHRNFSEASDIQIDISEFCNST--NSLPTCNTNVVQQQVTRTPRNVV 235
             CLN   +T  P   H N  E    +I    +C  T  N   + +T+V   ++    ++  
Sbjct:    66 CLNSQFVT--P---HVNTGE----RISGVSYCQETISNVYESPDTSVSYDKIYVREKSPT 116

Query:   236 FKGRKSLLRTPTKLASSVAYPFAFIKPCGIHGDVTLNDINQRI-HSPGSKTKQNIDDPSA 294
                  +      +L + + YPF  +KP G   DVTLNDIN+RI  +P    +  + D ++
Sbjct:   117 EPSSSNCGNKNKRLITKLVYPFGLVKPGGRENDVTLNDINERILMAPSRPIRHPVGDFAS 176

Query:   295 YPTSA-----FSGKPVVGKTKIHTEGGKGSITIMRTKG 327
              P  +      SGK VV  TKI T+G +G+ITI+RTKG
Sbjct:   177 RPCVSGRGPGLSGKAVVALTKIQTQG-RGTITIIRTKG 213

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2204538 AT1G14630 "AT1G14630" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 7.6e-10, P = 7.6e-10
 Identities = 54/165 (32%), Positives = 79/165 (47%)

Query:   170 SFEGWIAECLNDPEMTFTPDDMHRNFSEASDIQIDISEFCNSTNSLPTCNTNVVQQQVTR 229
             SF G  AE  + P+        H   SE  +     S+F + +   P  + N+  ++ + 
Sbjct:    72 SFNG--AE--DKPDNDLDHSQNHWGLSE--NYSCTSSQFADES---PNSSINICSEEKSS 122

Query:   230 -TPRNVVFKGRKSLLRTPTKLASSVAYPFAFIKPCGIHGDVTLNDINQRIHSPGSK-TKQ 287
              + RN       +  +        V YPF  +KP G   D+TLNDIN+RI  P ++  + 
Sbjct:   123 ISSRNSFEPSSSTSKKNDYDEKKRVVYPFGVVKPGGREEDITLNDINKRILMPSARPVRH 182

Query:   288 NIDDPSAYP-TSA----FSGKPVVGKTKIHTEGGKGSITIMRTKG 327
              + D +  P  SA     SGK VV  TKI T G +G+ITI+RTKG
Sbjct:   183 PVGDFACRPCVSADGPGLSGKAVVAFTKIQTLG-RGTITIIRTKG 226


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.129   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      327       327   0.00088  116 3  11 23  0.46    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  245 KB (2132 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  31.10u 0.13s 31.23t   Elapsed:  00:00:02
  Total cpu time:  31.10u 0.13s 31.23t   Elapsed:  00:00:02
  Start:  Sat May 11 14:35:14 2013   End:  Sat May 11 14:35:16 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NLW5	XRI1_ARATH	No assigned EC number	0.5266	0.8837	0.9633	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	327
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 9e-04
 Identities = 51/325 (15%), Positives = 93/325 (28%), Gaps = 116/325 (35%)

Query: 39  EEFCLQKGSNFDMSGSQFNEVILNEEDL-----------SY-----MLDD---------- 72
           ++   Q   N+       + + L    +            Y     +L +          
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 73  -------ETTPVKSCGDLAYQATHSGKMSKDPKEHRETYSQAKRRRMLQFDPQVLDSSLC 125
                   TT  K   D    A  +  +S D   H  T +  + + +L    + LD    
Sbjct: 263 NLSCKILLTTRFKQVTD-FLSAATTTHISLD--HHSMTLTPDEVKSLLL---KYLDCR-- 314

Query: 126 CDEMPSAFQKSNEREDSVEEVLPGVSQWTTGLSGLSASNCDGLDSFEGW----------- 174
             ++P        RE  V    P        LS ++ S  DGL +++ W           
Sbjct: 315 PQDLP--------RE--VLTTNPRR------LSIIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 175 IAECLNDPEMTFTPDDMHRNFSEASDIQIDISEFCNSTNSLPTCNTNVVQ----QQVTRT 230
           I   LN       P +  + F         +S F  S + +P   T ++       +   
Sbjct: 359 IESSLNV----LEPAEYRKMF-------DRLSVFPPSAH-IP---TILLSLIWFDVIKSD 403

Query: 231 PRNVVFK-GRKSLL-RTPTKLASSVAYPFAFIKPCGIHGDVTL-----NDINQRIHSPGS 283
              VV K  + SL+ + P +   S            I   + L      +    +H    
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTIS------------IP-SIYLELKVKLENEYALH---- 446

Query: 284 KTKQNID---DPSAYPTSAFSGKPV 305
             +  +D    P  + +       +
Sbjct: 447 --RSIVDHYNIPKTFDSDDLIPPYL 469

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00