Citrus Sinensis ID: 020367

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
Protein Sequence
MLQMHLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKLI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHcccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccHHccHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEcccccccccccccccccHcccccccccHEEEEEEEEcccccccccccccccccccccccccccccccHccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHEEEEHcccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHEccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHccccEEEEEEcHHHEEEEc
Coil and Loop (DISEMBL)
mlqmhlsssfslkyhplqkagciktlespvthihgVLNRSQEKKYAIKCSQSNSFYNLTNkiassrnckpfnshrapvtlqdgyasksedddhsnSFLNVFLKKFHALYRFMRAYACAGVIIAttsnsllpvqtladltpAYFTGLMEALVPAVLMHIYVVAINQlsdvevdkvnkpylplasgeismGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAysvqlpllrwkgnSFLAAFCMVSLNGLLTQFPVYVHIQKYvlgrpleiftrplMFATAFISCFCVVIAFIKdlhdvdgdkkfGIKTLSVMLGkervskli
Flexible Loop (DISEMBL)
MLQMHLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINqlsdvevdKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTlsvmlgkervskli
Low Complexity Region (SEG)
MLQMHLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKLI
Disordered region (IsUnstruct)
***********LKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKI*********************************SFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVML*********
Disordered Region (DISOPRED)
*********FSLKYHPLQ***********************************************************************************LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKLI
Disordered Region (DISEMBL)
********SFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGY********HSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKLI
Disordered Region (DISPRO)
****HLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLT************************************SFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKLI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQMHLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	327	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.733	0.610	0.487	2e-62
B7FA90	404	Probable homogentisate ph	yes	no	0.761	0.616	0.442	1e-55
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.685	0.546	0.400	2e-45
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.657	0.525	0.384	9e-40
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.697	0.590	0.336	2e-24
Q0D576	379	Probable homogentisate ph	no	no	0.522	0.451	0.370	4e-21
C5A1J7	276	Digeranylgeranylglyceryl	yes	no	0.437	0.518	0.298	3e-08
Q4J8K2	275	Digeranylgeranylglyceryl	yes	no	0.538	0.64	0.296	7e-08
B6YW76	276	Digeranylgeranylglyceryl	yes	no	0.425	0.503	0.333	8e-08
B1L6Z7	281	Digeranylgeranylglyceryl	yes	no	0.458	0.533	0.283	3e-07

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  239 bits (611), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 118/242 (48%), Positives = 168/242 (69%), Gaps = 2/242 (0%)

Query: 82  DGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA 141
           +  A + E  D SNS    F     A YRF R +   G +++  S S L V+ ++D++P 
Sbjct: 75  NATAGQPEAFD-SNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPL 133

Query: 142 YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALM 201
            FTG++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIAI  + ++M
Sbjct: 134 LFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIM 193

Query: 202 SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261
           S     ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y
Sbjct: 194 SFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFY 253

Query: 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKE 321
           +HIQ +V GRP+ +FTRPL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG++
Sbjct: 254 LHIQTHVFGRPI-LFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQK 312

Query: 322 RV 323
           RV
Sbjct: 313 RV 314

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  216 bits (551), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 112/253 (44%), Positives = 162/253 (64%), Gaps = 4/253 (1%)

Query: 74  HRAPVTLQD--GYASKSEDDDH-SNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLL 130
           HR   +  D  G   +S  + H S+S          A YRF R +   G  ++  S SLL
Sbjct: 74  HRPTSSSADASGQPLQSSAEAHDSSSIWKPISSSLDAFYRFSRPHTVIGTALSIVSVSLL 133

Query: 131 PVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGT 190
            V+ L+D++P + TGL+EA+V A+ M+IY+V +NQL D+E+DKVNKP LPLASGE S  T
Sbjct: 134 AVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLASGEYSPAT 193

Query: 191 GIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVS 250
           G+A+  A A MS      + S P   A+     +GTAYS+ LP LRWK ++ +AA C+++
Sbjct: 194 GVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILA 253

Query: 251 LNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFG 310
           +  ++ Q   ++HIQ +V  RP  +FTRPL+FATAF++ F VVIA  KD+ D++GD+ FG
Sbjct: 254 VRAVIVQLAFFLHIQTFVFRRP-AVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFG 312

Query: 311 IKTLSVMLGKERV 323
           IK+ SV LG+++V
Sbjct: 313 IKSFSVRLGQKKV 325

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  182 bits (463), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/232 (40%), Positives = 143/232 (61%), Gaps = 8/232 (3%)

Query: 92  DHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALV 151
           D  N  L++F       Y+F R YA   +++  T  SL+ V+ L+DL+ A+F G ++ +V
Sbjct: 108 DSVNDALDIF-------YKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVV 160

Query: 152 PAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRS 211
             + +HI+ V +NQL D+E+DK+NKP LPLASG++S    + IT +S ++ L +A ++ S
Sbjct: 161 AVICIHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDS 220

Query: 212 PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGR 271
            P  W V     V +AY+V LPLLRWK    L A   ++   +      ++H+Q  V  R
Sbjct: 221 WPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKR 280

Query: 272 PLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERV 323
           P   F RPL+F TA +S + +VIA  KD+ D++GD+KFGI++LS+ LG +RV
Sbjct: 281 P-TTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRV 331

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  164 bits (415), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 83/216 (38%), Positives = 133/216 (61%), Gaps = 1/216 (0%)

Query: 107 ALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQL 166
           A Y F   Y   G+ +   S+SLL V+ L+D++ ++  G+++ ++P + + IY+  +NQL
Sbjct: 115 AFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEIYLCGVNQL 174

Query: 167 SDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGT 226
            D+E+DK+NKP+LP+ASG+ S  TG+ I+ A   +S  +  +  S P I  ++      T
Sbjct: 175 YDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICNLVVIASSWT 234

Query: 227 AYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAF 286
           AYS+ +PLLRWK   F+AA CM+S   L      + H+Q  VL RP+  F R L F  AF
Sbjct: 235 AYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIG-FPRSLGFLVAF 293

Query: 287 ISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKER 322
           ++ + + +A  KD+ DV+GDK+ GI + +V LG++R
Sbjct: 294 MTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKR 329

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 133/244 (54%), Gaps = 16/244 (6%)

Query: 88  SEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGL- 146
           +E DD     L+   +  +A +RF+R +   G  + +T+   L  + L + T      L 
Sbjct: 77  AESDD---PVLDRIARFQNACWRFLRPHTIRGTALGSTA---LVTRALIENTHLIKWSLV 130

Query: 147 ---MEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSL 203
              +  L+  +  + Y+V INQ+ D+ +DKVNKPYLP+A+G++S+ +   + +  A+  L
Sbjct: 131 LKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGL 190

Query: 204 AYAVMIRSPPFIWAVIAW-IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYV 262
              V     PFI ++ +  +F+GT YSV  P LR K     A   + ++ G L  F VY 
Sbjct: 191 -LVVGFNFGPFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY- 246

Query: 263 HIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKER 322
           H  +  LG P + ++ P+ F T+F++ F +VIA  KDL DV+GD+KF I TL+  LG   
Sbjct: 247 HATRAALGLPFQ-WSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRN 305

Query: 323 VSKL 326
           ++ L
Sbjct: 306 IAFL 309

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score =  102 bits (254), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/181 (37%), Positives = 105/181 (58%), Gaps = 10/181 (5%)

Query: 149 ALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTG--IAITLASALMSLAYA 206
            LV  +  + Y+V INQ+ D+ +DKVNKPYLP+A+G++S+ T   + +  A+A  S+   
Sbjct: 129 GLVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSI--- 185

Query: 207 VMIRSPPFIWAVIAW-IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQ 265
           V+    PFI ++    +F+GT YSV  P  R K     A   + ++ G L  F VY +  
Sbjct: 186 VVTNFGPFITSLYCLGLFLGTIYSV--PPFRLKRYPVAAFLIIATVRGFLLNFGVY-YAT 242

Query: 266 KYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSK 325
           +  LG   + ++ P+ F T F++ F +VIA  KDL DV+GD+K+ I TL+  LG   ++ 
Sbjct: 243 RAALGLTFQ-WSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAF 301

Query: 326 L 326
           L
Sbjct: 302 L 302

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|C5A1J7|DGGGP_THEGJ Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_1764 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 21/164 (12%)

Query: 163 INQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI 222
           IN   D E+D++N+P  PL  G +   T +  +L    + LA A++I    F +A++A+I
Sbjct: 56  INDYFDYEIDRINRPERPLPRGAMDRRTALWYSLFLFAVGLALALLISLKAFAFALLAYI 115

Query: 223 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMF 282
            +   Y+ +L  L + GN  +AA   V+        P+Y  I    +G          + 
Sbjct: 116 TM-FLYAWKLKPLPFIGNIAVAALTGVT--------PLYGAIAVGKIG----------LA 156

Query: 283 ATAFISCFCVVIA--FIKDLHDVDGDKKFGIKTLSVMLGKERVS 324
            T  +  F V +A   +KD+ DV+GD K G KTL ++LG+ + +
Sbjct: 157 GTLAVCAFLVNVAREIVKDIEDVEGDLKKGAKTLPIILGRRKAA 200

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) (taxid: 593117)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q4J8K2|DGGGP_SULAC Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=Saci_1565 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 30/206 (14%)

Query: 116 ACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN 175
           A  G +IATT             TP +F  L+  +V  +    YV  IN + D+EVDK+N
Sbjct: 22  AFMGYVIATTWK----------FTPLFFLPLL--VVSLIAAGGYV--INDVYDIEVDKIN 67

Query: 176 KPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLL 235
           KP  PL SG I++      ++    + L  ++ +   PF +A+I  + +   Y+  L  L
Sbjct: 68  KPERPLPSGRIAVNIARRFSIVLFAVGLIISIPLGLIPFGFALITIVLL-YEYARSLKKL 126

Query: 236 RWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIA 295
              GN       +V+L   L+ +  Y  +     G  L  F  P    T +I  F +   
Sbjct: 127 GLVGN------FIVALTSALSAY--YGGLAS---GSLLGNFIIP----TIYIFFFTLSRE 171

Query: 296 FIKDLHDVDGDKKFGIKTLSVMLGKE 321
           F+K + D++GDK+ G+ TL+V LG++
Sbjct: 172 FVKGIEDIEGDKRNGVNTLAVKLGEK 197

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) (taxid: 330779)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|B6YW76|DGGGP_THEON Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus onnurineus (strain NA1) GN=TON_1950 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 81/168 (48%), Gaps = 29/168 (17%)

Query: 163 INQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASAL--MSLAYAVMIRSPPFIWAVIA 220
           IN   D E+DK+N+P  PL  G  +MG  +A+  +  L  + LA A MI    FI  VIA
Sbjct: 56  INDYFDYEIDKINRPERPLPRG--AMGRKVALYYSMLLFAVGLALAYMINIYAFILGVIA 113

Query: 221 WI--FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 278
           ++  F+   Y+ +L  L + GN  +A        GL    P+Y  +    LG        
Sbjct: 114 YVTMFI---YAWKLKPLPFVGNIVVA--------GLTGATPLYGAVAVEHLG-------- 154

Query: 279 PLMFATAFISCFCVVIA--FIKDLHDVDGDKKFGIKTLSVMLGKERVS 324
             +     I  F V +A   IKD+ DV+GD   G KTL ++ GK+R +
Sbjct: 155 --LAGYLAICAFLVNVAREVIKDIEDVEGDMAKGAKTLPIIWGKKRAA 200

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 16/166 (9%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 221
           AIN   D E+D +NKPY P+ SG IS    + I +A +L  +A ++ +    F+  V A+
Sbjct: 54  AINDYYDAEIDAINKPYRPIPSGRISKREALNIYIALSLFGIALSIFLGFIEFL-IVTAF 112

Query: 222 IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLM 281
                AY+      RW   + +    +VSL    T   ++  +    L   + IF+    
Sbjct: 113 SLSWYAYA------RWLKRTGVPGNALVSLGVAFTL--IFGSLAAGNLTNKVIIFS---- 160

Query: 282 FATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKLI 327
            + AF S   ++  F+K + D+ GD+  G++T++V +G +R   L+
Sbjct: 161 -SVAFTS--NLIREFVKAVEDLPGDRAHGVRTIAVRIGVKRTGILV 203

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
359476155	397	PREDICTED: probable homogentisate phytyl	0.886	0.730	0.432	7e-65
296082088	398	unnamed protein product [Vitis vinifera]	0.877	0.721	0.433	6e-64
219842170	411	homogentisate geranylgeranyl transferase	0.926	0.737	0.447	1e-63
185487419	407	homogentisate phytyltransferase [Manihot	0.856	0.687	0.441	2e-61
295656253	401	homogentisate geranylgeranyl transferase	0.960	0.783	0.441	2e-61
30680535	393	homogentisate phytyltransferase 1 [Arabi	0.733	0.610	0.487	1e-60
224143266	284	predicted protein [Populus trichocarpa]	0.663	0.764	0.527	1e-60
377657555	394	homogentisate phytyltransferase [Brassic	0.685	0.568	0.506	1e-60
297836742	393	predicted protein [Arabidopsis lyrata su	0.733	0.610	0.483	2e-60
299507806	393	homogentisate phytyltransferase [Solanum	0.733	0.610	0.483	3e-60

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  253 bits (646), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 135/312 (43%), Positives = 196/312 (62%), Gaps = 22/312 (7%)

Query: 17  LQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCK--PFNSH 74
           LQ+ GC++  +  V   H  L           C  SN F   +   +SS N +   F SH
Sbjct: 24  LQQQGCVQPPQLSVKKTHNFLK---------SCYCSNPFKCCSEGFSSSVNIQHLTFKSH 74

Query: 75  -RAP--VTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLP 131
            R P  V+ + GY SK ED +H +       K+  A Y F R +   G +I  TS SLLP
Sbjct: 75  KRNPIHVSSEYGYPSKPEDQNHVS-------KQLRAFYLFSRPHTIIGTVIGITSVSLLP 127

Query: 132 VQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTG 191
           ++T++DL+PA+F GL++A+VP+VLM+IYVV +NQ+ DVE+DKVNKP LPLASG+ SM TG
Sbjct: 128 LETISDLSPAFFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETG 187

Query: 192 IAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSL 251
             I   S LMS+   +M +SPP   A++    +GTAYS+++PLLRWK    LAA C++ +
Sbjct: 188 SQIVFISLLMSVGMGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIV 247

Query: 252 NGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGI 311
             ++ Q   + HIQK+VLGR + ++T+ ++F  AF+  F  VIA  KD+ DVDGD++FGI
Sbjct: 248 RAIVVQLAFFAHIQKHVLGRSI-VYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGI 306

Query: 312 KTLSVMLGKERV 323
           ++ +V LG+++V
Sbjct: 307 QSFTVKLGQKKV 318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082088|emb|CBI21093.3| unnamed protein product [Vitis vinifera]

 Score =  250 bits (639), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 134/309 (43%), Positives = 194/309 (62%), Gaps = 22/309 (7%)

Query: 20  AGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCK--PFNSH-RA 76
           AGC++  +  V   H  L           C  SN F   +   +SS N +   F SH R 
Sbjct: 3   AGCVQPPQLSVKKTHNFLK---------SCYCSNPFKCCSEGFSSSVNIQHLTFKSHKRN 53

Query: 77  P--VTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQT 134
           P  V+ + GY SK ED +H +       K+  A Y F R +   G +I  TS SLLP++T
Sbjct: 54  PIHVSSEYGYPSKPEDQNHVS-------KQLRAFYLFSRPHTIIGTVIGITSVSLLPLET 106

Query: 135 LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAI 194
           ++DL+PA+F GL++A+VP+VLM+IYVV +NQ+ DVE+DKVNKP LPLASG+ SM TG  I
Sbjct: 107 ISDLSPAFFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETGSQI 166

Query: 195 TLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL 254
              S LMS+   +M +SPP   A++    +GTAYS+++PLLRWK    LAA C++ +  +
Sbjct: 167 VFISLLMSVGMGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIVRAI 226

Query: 255 LTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTL 314
           + Q   + HIQK+VLGR + ++T+ ++F  AF+  F  VIA  KD+ DVDGD++FGI++ 
Sbjct: 227 VVQLAFFAHIQKHVLGRSI-VYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSF 285

Query: 315 SVMLGKERV 323
           +V LG+++V
Sbjct: 286 TVKLGQKKV 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/324 (44%), Positives = 202/324 (62%), Gaps = 21/324 (6%)

Query: 13  KYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAI---------KCSQSNSFYNLTN-KI 62
           KY  L   G + T+      ++ +L  S  KK  I         K S+    Y L N +I
Sbjct: 15  KYQVLD-PGQVTTVTVLKKQVNHILKESXCKKPIICSLRSLSWAKNSRKKELYVLRNLRI 73

Query: 63  ASSRNCKPFNSHRAPVTLQDGY-ASKSEDDDH--SNSFLNVFLKKFHALYRFMRAYACAG 119
            + +N  P       + LQ+ + A  SED D   S+S     L+  ++LY+F R +   G
Sbjct: 74  LTRKNGIP------AIFLQNNWLAPNSEDGDDICSSSKRGPILEHLNSLYQFSRPHTVIG 127

Query: 120 VIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL 179
            II  TS SLLPV+T+ DL+P YF GL++ALVP+VLM+IYVV +NQL DVE+DKVNKPYL
Sbjct: 128 TIIGITSVSLLPVETIVDLSPTYFIGLLKALVPSVLMNIYVVGLNQLFDVEIDKVNKPYL 187

Query: 180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKG 239
           PLASG+ SM TGI I  AS L+SL   +  +SPP + A++    +G+ YS++LP LRWK 
Sbjct: 188 PLASGKFSMATGILIVSASLLLSLYMGITFQSPPLLAALLISFALGSVYSIELPFLRWKK 247

Query: 240 NSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKD 299
           ++FLAA C++ +  ++ Q   +VHIQK+VLG+ + I  R LMFATAF+  F   IA  KD
Sbjct: 248 HAFLAASCILIVRAMVVQLAFFVHIQKFVLGKSIFI-PRSLMFATAFMCFFSAAIALFKD 306

Query: 300 LHDVDGDKKFGIKTLSVMLGKERV 323
           + DV+GD+ +GI++ SV LG+ERV
Sbjct: 307 IPDVEGDRDYGIQSFSVSLGQERV 330

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|185487419|gb|ACC77744.1| homogentisate phytyltransferase [Manihot esculenta]

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 125/283 (44%), Positives = 184/283 (65%), Gaps = 3/283 (1%)

Query: 42  EKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHS-NSFLNV 100
           E+ Y  K       ++L + +  S   +  ++H   V    G   +SE D +S  S  N 
Sbjct: 48  ERHYFAKSQHHQMKHHLRHIVERSTIYQKSDAHFL-VHATSGQPLESEPDAYSPKSTSNS 106

Query: 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYV 160
            L    A YRF R +   G  ++  S SLL V+ L+DL+P +FTG++EA+V A+LM+IY+
Sbjct: 107 ILNALDAFYRFSRPHTVIGTALSILSVSLLAVEKLSDLSPLFFTGVLEAVVAALLMNIYI 166

Query: 161 VAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIA 220
           V +NQL+D+E+DKVNKPYLPLASGE S+G G+ I  + ++MS     ++ S P  WA+  
Sbjct: 167 VGLNQLTDIEIDKVNKPYLPLASGEYSVGIGVMIIASFSMMSFWLGWVVGSWPLFWALFV 226

Query: 221 WIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPL 280
              +GTAYS+ LPLLRWK  +F+AA C++++  ++ Q   Y+H+Q +V GRP  +F+RPL
Sbjct: 227 SFVLGTAYSINLPLLRWKRFAFVAAMCILAVRAVIVQLAFYLHMQTHVYGRP-AVFSRPL 285

Query: 281 MFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERV 323
           +FATAF+S F VVIA  KD+ D++GDK FGI++ +V LG+ERV
Sbjct: 286 IFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFTVRLGQERV 328

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 146/331 (44%), Positives = 200/331 (60%), Gaps = 17/331 (5%)

Query: 1   MLQMHLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNL-- 58
           M+Q H     S +       G I  L+ P  H+    N +  KK ++     +S  N+  
Sbjct: 1   MIQAHNHPFVSCRLQNPPNQGLITLLQRPQRHLK-FSNGNTAKKLSV-----HSCVNILA 54

Query: 59  -TNKIASSRNCKPFNSHRAPV-----TLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFM 112
            T  I+SSR+ KP    + P      TL+  +  +S+DD  +        +K  A YRF 
Sbjct: 55  ATLSISSSRS-KPTRGKKLPGQTLCGTLEHEFVIESKDDQLT-LLQGDLWRKIDAFYRFS 112

Query: 113 RAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVD 172
           R +   G II  TS SLLP+ ++ DL+PA+F G ++AL+P++ M+IYVV +NQL DVE+D
Sbjct: 113 RPHTIIGTIIGITSVSLLPLTSIGDLSPAFFVGYLKALIPSIFMNIYVVGLNQLFDVEID 172

Query: 173 KVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQL 232
           KVNKP LPLASGE SMG G AI  A  LMS A  ++ +SPP  +A++     G+AYSV+L
Sbjct: 173 KVNKPNLPLASGEYSMGLGKAIVSAFGLMSFAMGIVFQSPPVFFALLICFLFGSAYSVEL 232

Query: 233 PLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCV 292
           PLLRWK N+FLAAF ++ +  +      + HIQKYVLGRP+ +F R L FAT  IS F  
Sbjct: 233 PLLRWKRNAFLAAFSILMVRAITVNLAFFYHIQKYVLGRPM-VFPRSLCFATVCISMFTT 291

Query: 293 VIAFIKDLHDVDGDKKFGIKTLSVMLGKERV 323
           VIA  KD+ DVDGD+ FGI++ SV LG++RV
Sbjct: 292 VIALFKDIPDVDGDRDFGIQSFSVCLGQKRV 322

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680535|ref|NP_849984.1| homogentisate phytyltransferase 1 [Arabidopsis thaliana] gi|75161194|sp|Q8VWJ1.1|HPT1_ARATH RecName: Full=Homogentisate phytyltransferase 1, chloroplastic; AltName: Full=Tocopherol polyprenyltransferase 1; AltName: Full=Vitamin E pathway gene 2-1 protein; Short=AtVTE2-1; Flags: Precursor gi|17104828|gb|AAL35412.1|AF324344_1 tocopherol polyprenyltransferase [Arabidopsis thaliana] gi|17380874|gb|AAL36249.1| unknown protein [Arabidopsis thaliana] gi|20384919|gb|AAM10489.1| homogentisate phytylprenyltransferase [Arabidopsis thaliana] gi|21281072|gb|AAM45041.1| unknown protein [Arabidopsis thaliana] gi|281193026|gb|ADA57641.1| homogentisate phytyltransferase [Arabidopsis thaliana] gi|330251737|gb|AEC06831.1| homogentisate phytyltransferase 1 [Arabidopsis thaliana]

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 118/242 (48%), Positives = 168/242 (69%), Gaps = 2/242 (0%)

Query: 82  DGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA 141
           +  A + E  D SNS    F     A YRF R +   G +++  S S L V+ ++D++P 
Sbjct: 75  NATAGQPEAFD-SNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPL 133

Query: 142 YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALM 201
            FTG++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIAI  + ++M
Sbjct: 134 LFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIM 193

Query: 202 SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261
           S     ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y
Sbjct: 194 SFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFY 253

Query: 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKE 321
           +HIQ +V GRP+ +FTRPL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG++
Sbjct: 254 LHIQTHVFGRPI-LFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQK 312

Query: 322 RV 323
           RV
Sbjct: 313 RV 314

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 115/218 (52%), Positives = 160/218 (73%), Gaps = 1/218 (0%)

Query: 106 HALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQ 165
           H+ Y+F R +   G +I  TS SLLPV+T+++L+P +F GL++ALVP+VLM+IYVV +NQ
Sbjct: 2   HSFYQFSRPHTVIGTLIGITSVSLLPVETISELSPTFFMGLLKALVPSVLMNIYVVGLNQ 61

Query: 166 LSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVG 225
           L DVE+DKVNKPYLPLASG+ SMGTG+AI  AS L S A  +M +SP    A++    +G
Sbjct: 62  LFDVEIDKVNKPYLPLASGDFSMGTGVAIVSASLLASFAMGIMFQSPLLFSALLISCVLG 121

Query: 226 TAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATA 285
           + YS++LP LRWK  +FLAA C++ +  ++ Q   +VH+QK+VLG+   + TR L+FATA
Sbjct: 122 SVYSIELPFLRWKKQAFLAATCIMIVRAIVVQLAFFVHMQKFVLGKT-TVVTRSLVFATA 180

Query: 286 FISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERV 323
           F+  F  VIA  KD+ DVDGD+ +GI++ SV LG+ERV
Sbjct: 181 FMCFFSAVIALFKDIPDVDGDRDYGIQSFSVSLGQERV 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657555|gb|AFB74211.1| homogentisate phytyltransferase [Brassica napus]

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 114/225 (50%), Positives = 161/225 (71%), Gaps = 1/225 (0%)

Query: 99  NVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHI 158
           N F     A YRF R +   G +++  S S L V+ ++D++P  FTG++EA+V A++M+I
Sbjct: 92  NSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNI 151

Query: 159 YVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAV 218
           Y+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIAI  + ++MS     ++ S P  WA+
Sbjct: 152 YIVGLNQLSDVEIDKVNKPYLPLASGEYSVKTGIAIVASFSIMSFWLGWIVGSWPLFWAL 211

Query: 219 IAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 278
                +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y+HIQ +V GRP+ +FTR
Sbjct: 212 FVSFILGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPV-MFTR 270

Query: 279 PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERV 323
           PL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG+ERV
Sbjct: 271 PLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQERV 315

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836742|ref|XP_002886253.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332093|gb|EFH62512.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 117/242 (48%), Positives = 168/242 (69%), Gaps = 2/242 (0%)

Query: 82  DGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA 141
           +  A + E  D +NS    F     A YRF R +   G +++  S S L V+ ++D++P 
Sbjct: 75  NATAGQPEAFD-ANSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPL 133

Query: 142 YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALM 201
            FTG++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIAI  + ++M
Sbjct: 134 LFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIM 193

Query: 202 SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261
           S     ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y
Sbjct: 194 SFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFY 253

Query: 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKE 321
           +HIQ +V GRP+ +FTRPL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG++
Sbjct: 254 LHIQTHVFGRPI-LFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQK 312

Query: 322 RV 323
           RV
Sbjct: 313 RV 314

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|299507806|gb|ADJ21814.1| homogentisate phytyltransferase [Solanum tuberosum]

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 117/242 (48%), Positives = 168/242 (69%), Gaps = 2/242 (0%)

Query: 82  DGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA 141
           +  A + E  D SNS    F     A YRF R +   G +++  S S L V+ ++D++P 
Sbjct: 75  NATAGQPEAFD-SNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPL 133

Query: 142 YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALM 201
            FTG++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIA+  + ++M
Sbjct: 134 LFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAMVASFSIM 193

Query: 202 SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261
           S     ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y
Sbjct: 194 SFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFY 253

Query: 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKE 321
           +HIQ +V GRP+ +FTRPL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG++
Sbjct: 254 LHIQTHVFGRPI-LFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQK 312

Query: 322 RV 323
           RV
Sbjct: 313 RV 314

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.724	0.603	0.493	1.2e-58
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.850	0.683	0.361	5e-44
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.654	0.521	0.413	2.8e-43
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.651	0.541	0.349	1.3e-27

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 118/239 (49%), Positives = 167/239 (69%)

Query:    85 ASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFT 144
             A + E  D SNS    F     A YRF R +   G +++  S S L V+ ++D++P  FT
Sbjct:    78 AGQPEAFD-SNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFT 136

Query:   145 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLA 204
             G++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIAI  + ++MS  
Sbjct:   137 GILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFW 196

Query:   205 YAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHI 264
                ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y+HI
Sbjct:   197 LGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHI 256

Query:   265 QKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERV 323
             Q +V GRP+ +FTRPL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG++RV
Sbjct:   257 QTHVFGRPI-LFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRV 314

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 103/285 (36%), Positives = 161/285 (56%)

Query:    42 EKKY-AIKCSQSN--SFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHSNSFL 98
             +K+Y A+  S+ N    Y +    ++S+ C+      A       Y  ++ D  +    +
Sbjct:    48 QKEYCAVIFSRHNLKQHYKVNEGGSTSKECEKKYVVNAISEQSFEYEPQARDPKNIWGSV 107

Query:    99 NVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHI 158
             N  L  F   Y+F R YA   V++  T  SL+ V+ L+DL+ A+F G ++ +V  + +HI
Sbjct:   108 NDALDTF---YKFCRPYAIFSVVLGATFKSLVAVERLSDLSLAFFIGWLQVVVAVICIHI 164

Query:   159 YVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAV 218
             + V +NQL D+E+DK+NKP LPLASG +S    + IT +S ++ L +A ++ S P  W V
Sbjct:   165 FDVGLNQLCDIEIDKINKPDLPLASGNLSFRNVVIITASSLILGLGFAWIVGSWPLFWTV 224

Query:   219 IAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 278
                     AY+V LPLLRWK    L A   ++   +      ++H+Q  V  RP   F R
Sbjct:   225 FICCMFAAAYNVDLPLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTT-FPR 283

Query:   279 PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERV 323
             PL+F TA +S + +VIA  KD+ D++GD+KFGI++LS+ LG +RV
Sbjct:   284 PLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRV 328

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 89/215 (41%), Positives = 137/215 (63%)

Query:   109 YRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSD 168
             Y+F R YA   +++  T  SL+ V+ L+DL+ A+F G ++ +V  + +HI+ V +NQL D
Sbjct:   118 YKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCD 177

Query:   169 VEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAY 228
             +E+DK+NKP LPLASG++S    + IT +S ++ L +A ++ S P  W V     V +AY
Sbjct:   178 IEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASAY 237

Query:   229 SVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFIS 288
             +V LPLLRWK    L A   ++   +      ++H+Q  V  RP   F RPL+F TA +S
Sbjct:   238 NVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTT-FPRPLIFCTAIVS 296

Query:   289 CFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERV 323
              + +VIA  KD+ D++GD+KFGI++LS+ LG +RV
Sbjct:   297 IYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRV 331

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 79/226 (34%), Positives = 126/226 (55%)

Query:   106 HALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHI----YVV 161
             +A +RF+R +   G  + +T+   L  + L + T      L+   +  +L  I    Y+V
Sbjct:    99 NACWRFLRPHTIRGTALGSTA---LVTRALIENTHLIKWSLVLKALSGLLALICGNGYIV 155

Query:   162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 221
              INQ+ D+ +DKVNKPYLP+A+G++S+ +   + +  A+  L   V     PFI ++ + 
Sbjct:   156 GINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLL-VVGFNFGPFITSLYSL 214

Query:   222 -IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPL 280
              +F+GT YSV  P LR K     A   + ++ G L  F VY H  +  LG P + ++ P+
Sbjct:   215 GLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQ-WSAPV 270

Query:   281 MFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326
              F T+F++ F +VIA  KDL DV+GD+KF I TL+  LG   ++ L
Sbjct:   271 AFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFL 316


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.136   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      327       327   0.00088  116 3  11 22  0.45    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  215 KB (2119 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.83u 0.16s 26.99t   Elapsed:  00:00:01
  Total cpu time:  26.83u 0.16s 26.99t   Elapsed:  00:00:01
  Start:  Sat May 11 16:12:47 2013   End:  Sat May 11 16:12:48 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	327
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	8e-91
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	5e-46
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	1e-19
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	2e-16
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	3e-12
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	2e-11
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	2e-11
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	5e-10
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	2e-09
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	1e-08
PRK12392	331	PRK12392, PRK12392, bacteriochlorophyll c synthase	8e-07
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	1e-05
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	2e-05
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	4e-05
PRK08238	479	PRK08238, PRK08238, hypothetical protein; Validate	2e-04
PRK12324	295	PRK12324, PRK12324, phosphoribose diphosphate:deca	4e-04
COG1575	303	COG1575, MenA, 1,4-dihydroxy-2-naphthoate octapren	0.002

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  271 bits (696), Expect = 8e-91
 Identities = 108/202 (53%), Positives = 152/202 (75%), Gaps = 1/202 (0%)

Query: 122 IATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPL 181
           +  TS SLL V++L+D +P +FTGL+EALVPA+LM+IY+V +NQL D+E+DKVNKPYLPL
Sbjct: 1   LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPL 60

Query: 182 ASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNS 241
           ASGE S+ TG+AI  + A+MS     ++ S P  WA+     +GTAYS+ LPLLRWK ++
Sbjct: 61  ASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSA 120

Query: 242 FLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLH 301
             AA C++++  ++ Q   ++H+Q +VLGRP  +FTRPL+FATAF+  F VVIA  KD+ 
Sbjct: 121 VAAASCILAVRAVVVQLAFFLHMQTHVLGRPA-VFTRPLIFATAFMCFFSVVIALFKDIP 179

Query: 302 DVDGDKKFGIKTLSVMLGKERV 323
           DV+GD+ FGI++ SV LG++RV
Sbjct: 180 DVEGDRIFGIRSFSVRLGQKRV 201

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  157 bits (400), Expect = 5e-46
 Identities = 76/240 (31%), Positives = 132/240 (55%), Gaps = 18/240 (7%)

Query: 94  SNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTG-------L 146
             + L       +AL++F R +     II T S S+L +  +A +  +  T        L
Sbjct: 2   PKNPLQPMTSWLYALWKFSRPHT----IIGT-SLSVLGLYLIA-IAASSNTIALANLGLL 55

Query: 147 MEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYA 206
           + A +  +  ++Y+V +NQL+D+E+D++NKP+LPLA+GE S   G  I + + +++L  A
Sbjct: 56  LGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILA 115

Query: 207 VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQK 266
             +  P  +  V   + +GTAYS  LP +R K    LAA C+ ++ G++    +++H Q 
Sbjct: 116 -ALLGPWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQ- 171

Query: 267 YVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326
           ++LG  + I    +   T F+  F   IA  KD+ D++GD+++ I T ++ LGK+ V KL
Sbjct: 172 WLLGGSVLIPP-TVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKL 230

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 86.4 bits (214), Expect = 1e-19
 Identities = 51/177 (28%), Positives = 78/177 (44%), Gaps = 15/177 (8%)

Query: 153 AVLMHIYVVAINQLSDVEVDKV--NKPYLPLASGEISMGTGIAITLASALMSLAYAVMIR 210
            +L+      +N   D E+D    NKP  PL SG IS    + + LA  L+ L  A+++ 
Sbjct: 32  LLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREALLLGLALLLLGLLLALLL- 90

Query: 211 SPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLG 270
            P  +   +  + +G  YS   P LR K    L    +    GLL      + +  Y +G
Sbjct: 91  GPLLLLLGLLGLLLGLLYS---PPLRLKRRPLLGELVVGLAFGLL------ILLGAYAVG 141

Query: 271 RPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKLI 327
                   PL+     +    + I    D+ DV+GD+K GI+TL V LG++R   L 
Sbjct: 142 G---DIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKRALALY 195

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 49/231 (21%), Positives = 83/231 (35%), Gaps = 23/231 (9%)

Query: 98  LNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMH 157
           L   LK    L R  R      +++      LL    L  L          A +   L  
Sbjct: 6   LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLL-----AFLAFFLAR 60

Query: 158 IYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFI 215
                IN L+D E+D++N      PL SG +S+   + + +   L+ LA A+++ +P   
Sbjct: 61  SAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLL-NPLAF 119

Query: 216 WAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEI 275
              +A + +  AY         K  +FL    +    GL              L      
Sbjct: 120 LLSLAALVLALAY------PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPL------ 167

Query: 276 FTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326
                         + +    I  + D++GD+K G+K+L V+ G ++   L
Sbjct: 168 ---LAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALAL 215

Length = 289

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 65.7 bits (161), Expect = 3e-12
 Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 22/168 (13%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 221
           A+N   D EVD++N+P  P+ SG IS    + + +   ++ L  A +I    F+  ++  
Sbjct: 55  ALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVS 114

Query: 222 IFVGTAYSVQLPLLRWKGN---SFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 278
           +  G  Y+ +L      GN   +FL     +                   +G   E    
Sbjct: 115 VL-GILYNWKLKEYGLIGNLYVAFLTGMTFI--------------FGGIAVGELNEAVI- 158

Query: 279 PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326
            L+ A AF+      I   KD+ DV+GD+  G +TL+++ G++   ++
Sbjct: 159 -LLAAMAFLMTLGREIM--KDIEDVEGDRLRGARTLAILYGEKIAGRI 203

Length = 279

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 21/166 (12%)

Query: 163 INQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI 222
           IN   D E+DK+N+P  PL  G +S    +  +L    + LA A +I    F++A+ A++
Sbjct: 56  INDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYV 115

Query: 223 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMF 282
            +   Y+ +L  L + GN  +A     +        P+Y  I    +G          + 
Sbjct: 116 LM-FLYAWKLKPLPFIGNVVVALLTGAT--------PIYGAIAVGRIG----------LA 156

Query: 283 ATAFISCFCVVIA--FIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326
               I  F V +A   +KD+ D++GDK  G KTL +++GK+R + +
Sbjct: 157 GYLAICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYI 202

Length = 277

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 63.3 bits (154), Expect = 2e-11
 Identities = 39/186 (20%), Positives = 77/186 (41%), Gaps = 21/186 (11%)

Query: 146 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAY 205
           L+  L+   L   +  +IN   D +VD +N+P  P+ SG IS+       L   +  L  
Sbjct: 40  LLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLV 99

Query: 206 AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLR---WKGNSFLAAFCMVSLNGLLTQFPVYV 262
           A+++ +   +   +  I +   YS+    L+   W G   +       L  +        
Sbjct: 100 ALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGL-SYEGLPWM-------- 150

Query: 263 HIQKYVLGRPL--EIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGK 320
               + +  PL  +     L+++          I  + D   V+GD++ G+++L VM+G 
Sbjct: 151 --AGHAIFAPLTWQSVVVALIYSLGAHG-----IMTLNDFKSVEGDRQLGLRSLPVMIGV 203

Query: 321 ERVSKL 326
           +R + +
Sbjct: 204 KRAAIV 209

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 58.8 bits (143), Expect = 5e-10
 Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 23/182 (12%)

Query: 153 AVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSP 212
             L+   V  IN L+D+E D +NKP   + S   + G  + + +    +      +I  P
Sbjct: 45  TFLIAAAVYIINYLTDLEEDIINKPERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGP 104

Query: 213 PFIWAVIAWIFVGTAYSV-------QLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQ 265
            F    I  + +G  YSV       ++PL     N  ++      L  L        + Q
Sbjct: 105 KFALIFIIPLILGILYSVFFKRRLKRIPLF---KNLVVS-----LLWALSPLILGVYYYQ 156

Query: 266 KYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSK 325
             +           L+    FI     +   + D+ D++GD+K G+KTL ++LGKER  K
Sbjct: 157 LTI--------FSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLK 208

Query: 326 LI 327
            +
Sbjct: 209 FL 210

Length = 285

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 24/172 (13%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 221
            +N   D EVD +N+PY P+ SG IS+   + +     ++ LA A ++    F+ A++  
Sbjct: 83  TLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALLG- 141

Query: 222 IFVGTAYSVQLPLLR-----WKGNSFLAAFCMVSLNGL--LTQFPVYVHIQKYVLGRPLE 274
           +F+   YS   P LR     W GN  +      S  GL        +             
Sbjct: 142 LFLAWIYSA--PPLRLKQNGWLGNYAVGL----SYEGLPWWAGAAAFGAGLP-----SWP 190

Query: 275 IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL 326
           I    L+++          I  + D   V+GD++ G+++L V+ G++  +++
Sbjct: 191 IVILALLYSLGAHG-----IMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARI 237

Length = 314

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 23/164 (14%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 221
            IN + D+E+DK+NKP  P+ SG IS+      ++   ++ L  ++ I    F+ A++  
Sbjct: 55  VINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNS 114

Query: 222 IFVGTAYSVQLPLLRWKGN---SFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 278
           I +   Y+  L      GN   ++L       + G L  F V   I              
Sbjct: 115 ILL-YLYAKDLKKTGLIGNLIVAYLTGL--SFIFGGLAVFNVLRII-------------- 157

Query: 279 PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKER 322
            ++F  AF S +   I  +KD+ D++GD K  + TL +  G ++
Sbjct: 158 -ILFLCAFFSTWSREI--VKDIEDIEGDLKENVITLPIKYGIKK 198

Length = 279

>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 20/166 (12%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMI-------RSPPF 214
           ++N   D+E+D+VN+P  P+ SG +S    +  ++   L+++   V +       R    
Sbjct: 68  SVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVI 127

Query: 215 IWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLE 274
           I +++A +FV   YS   P L+ K N   +A  +    G +T          ++    L 
Sbjct: 128 ISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSYGFIT----------FLSANALF 175

Query: 275 IFTRPLMFATAFISCF-CVVIAFIKDLHDVDGDKKFGIKTLSVMLG 319
              RP +   A ++ F  + +  + D   V+GDK+ G+K+L+VM+G
Sbjct: 176 SDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIG 221

Length = 331

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 17/169 (10%)

Query: 159 YVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMI------RSP 212
           Y   IN   D ++D +N+PY P+ SG IS    I   +   +  +A A ++        P
Sbjct: 69  YTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFP 128

Query: 213 PFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRP 272
                 +   F+   YS   P L+ K N +L  F + +          Y+ +  +     
Sbjct: 129 NVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGA---------SYIALPWWAGHAL 177

Query: 273 LEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKE 321
                  +   T   S   + IA + D   V+GD+  G+++L V  G E
Sbjct: 178 FGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIE 226

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 47/209 (22%), Positives = 78/209 (37%), Gaps = 68/209 (32%)

Query: 144 TGLMEALVPAVLMHIYVV-------AINQLSDVEVDKVNKPYLPLASGEIS--------- 187
            G++ +     L    V        AIN   D E+D++N+P  P+ SG +S         
Sbjct: 31  GGILSSPSLTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSI 90

Query: 188 ----MGTGIAITL-----ASALMSL----AYAVMIRSPPFIW-AVIAWIFVGTAYSVQLP 233
                G  +A  L     A AL +      YA  ++  P +  A +A++           
Sbjct: 91  LLFAAGVALAFLLPPLCLAIALFNSLLLVLYAETLKGTPGLGNASVAYL----------- 139

Query: 234 LLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVV 293
                G++FL     V   GLL                         +FA A ++     
Sbjct: 140 ----TGSTFLFGGAAVGTEGLLALLV---------------------LFALAALATLARE 174

Query: 294 IAFIKDLHDVDGDKKFGIKTLSVMLGKER 322
           I  IKD+ D++GD+  G +TL +++G  +
Sbjct: 175 I--IKDVEDIEGDRAEGARTLPILIGVRK 201

Length = 276

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 47/182 (25%), Positives = 74/182 (40%), Gaps = 43/182 (23%)

Query: 159 YVVAINQLSDVEVDKVNKPYLPLASGEISMG---TGIAITLASALMSLAYAVMIRS---- 211
           Y   IN   D E+D +N+PY P+ SG IS     T I + L   L  LAY + + +    
Sbjct: 138 YTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGL-GLAYTLDVWAGHDF 196

Query: 212 PPFIWAVIAWIFVGTAYSVQLPLLR-----WKGNSFLAA-------FCMVSLNGLLTQFP 259
           P   +  +    +   YS   P L+     W GN  L A       +   +L G LT   
Sbjct: 197 PIVFYLALGGSLLSYIYSA--PPLKLKQNGWIGNYALGASYISLPWWAGQALFGTLT--- 251

Query: 260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLG 319
                         ++    L+++ A +      IA + D   ++GD+  G+++L V  G
Sbjct: 252 -------------PDVVVLTLLYSIAGLG-----IAIVNDFKSIEGDRALGLQSLPVAFG 293

Query: 320 KE 321
            E
Sbjct: 294 VE 295

Length = 375

>gnl|CDD|236195 PRK08238, PRK08238, hypothetical protein; Validated

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 158 IYVVAINQLSDVEVDK--VNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFI 215
           +Y+  +N L D+E D+    K   P ASG + +  G+A      L  LA A+ +  P F+
Sbjct: 242 VYI--LNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALAL-GPAFL 298

Query: 216 WAVIAWIFVGTAYSVQL 232
             ++A++ +  AYS++L
Sbjct: 299 LVLLAYLALTLAYSLRL 315

Length = 479

>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 158 IYVVAINQLSDVEVDKV--NKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFI 215
           +Y+  +N + DVE D++   K   P+ASG +S+     + +   + SLA A ++ SP   
Sbjct: 62  VYL--VNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAYLL-SPKLA 118

Query: 216 WAVIAWIFVGTAYSVQL 232
             ++ ++ +  AYS +L
Sbjct: 119 LVLLVYLVLNLAYSFKL 135

Length = 295

>gnl|CDD|224491 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 42/189 (22%), Positives = 69/189 (36%), Gaps = 24/189 (12%)

Query: 149 ALVPAVLMHIYVVAINQLSDVE--VDKVNKPYLPLASGEI---SMGTGIAITLASALMSL 203
           AL+ A+L+ I V   N   D +   D      L   SG I   SM   + ++LA  L++ 
Sbjct: 49  ALIAAILLQILVNLANDYFDYKKGTDTHGPDRL-KQSGLIVRQSMKPALILSLALFLLAG 107

Query: 204 AYAVMI-----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKG-NSFLAAFCMVSLNGLLTQ 257
              + +          +   +  I  G  Y+     L + G            L  L   
Sbjct: 108 LALLGVILAALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLIVLGAY 167

Query: 258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVM 317
           +     IQ   L   + + + P+    A        I    +L D++ D + G  TL+V 
Sbjct: 168 Y-----IQTGRLSWAILLPSLPVGILIA-------NILLANNLRDIEEDIRNGKYTLAVR 215

Query: 318 LGKERVSKL 326
           LG++   KL
Sbjct: 216 LGRKNARKL 224

Length = 303

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	327
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PLN00012	375	chlorophyll synthetase; Provisional	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.98
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.98
PRK12882	276	ubiA prenyltransferase; Reviewed	99.98
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.97
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.97
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.97
PRK12874	291	ubiA prenyltransferase; Reviewed	99.97
PRK13595	292	ubiA prenyltransferase; Provisional	99.97
PRK13106	300	ubiA prenyltransferase; Reviewed	99.97
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.97
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.97
PRK12886	291	ubiA prenyltransferase; Reviewed	99.97
PRK12895	286	ubiA prenyltransferase; Reviewed	99.97
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.96
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.96
PRK05951	296	ubiA prenyltransferase; Reviewed	99.96
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.96
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.96
PRK12888	284	ubiA prenyltransferase; Reviewed	99.96
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.96
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.96
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.96
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.96
PRK12873	294	ubiA prenyltransferase; Reviewed	99.95
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.95
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.95
PRK08238	479	hypothetical protein; Validated	99.95
PRK12876	300	ubiA prenyltransferase; Reviewed	99.95
PLN02922	315	prenyltransferase	99.95
PRK13105	282	ubiA prenyltransferase; Reviewed	99.95
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.95
PRK12871	297	ubiA prenyltransferase; Reviewed	99.94
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.94
PRK12875	282	ubiA prenyltransferase; Reviewed	99.94
PRK12872	285	ubiA prenyltransferase; Reviewed	99.93
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.93
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.93
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.92
PRK13592	299	ubiA prenyltransferase; Provisional	99.91
PRK13591	307	ubiA prenyltransferase; Provisional	99.9
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.88
PLN02776	341	prenyltransferase	99.88
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.77
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.26
KOG4581	359	consensus Predicted membrane protein [Function unk	99.05
PRK13591	307	ubiA prenyltransferase; Provisional	93.74
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	91.65
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	91.14
PLN00012	375	chlorophyll synthetase; Provisional	90.88
PRK12872	285	ubiA prenyltransferase; Reviewed	90.31
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	89.55
PLN02922	315	prenyltransferase	89.32
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	89.1
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	88.86
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	88.08
PRK12392	331	bacteriochlorophyll c synthase; Provisional	87.79
PRK12886	291	ubiA prenyltransferase; Reviewed	85.99
PRK12875	282	ubiA prenyltransferase; Reviewed	85.98
PRK13105	282	ubiA prenyltransferase; Reviewed	85.74
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	85.73
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	85.65
PRK12884	279	ubiA prenyltransferase; Reviewed	85.64
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	85.62
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	85.12
PRK04214	412	rbn ribonuclease BN/unknown domain fusion protein;	85.07
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	85.04
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	84.82
PRK12882	276	ubiA prenyltransferase; Reviewed	83.76
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	83.23
PRK12871	297	ubiA prenyltransferase; Reviewed	83.14
PRK12888	284	ubiA prenyltransferase; Reviewed	82.15
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	81.58
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	81.01
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	80.15

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=3.1e-40  Score=306.54  Aligned_cols=199  Identities=54%  Similarity=0.946  Sum_probs=182.0

Q ss_pred             HHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCCCCccccccChHHHHHHHHHHHHHHHHHH
Q 020367          127 NSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYA  206 (327)
Q Consensus       127 g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~la  206 (327)
                      .+++|.+..+|+++..+.+++.+++++++++.++..+|||+|+|+||+|||+||+|||++|+++++.++..+.++|++++
T Consensus         6 ~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la   85 (280)
T PLN02878          6 VSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMG   85 (280)
T ss_pred             HhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            35777777778777788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHH
Q 020367          207 VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAF  286 (327)
Q Consensus       207 ~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~  286 (327)
                      +.+|+++++++++.+++++++||.++||+|+||+++++.+|.....++.+.+|+|.|++++++|++. .++++.++.+++
T Consensus        86 ~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~-~~~~~~~~~~~f  164 (280)
T PLN02878         86 WIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPA-VFTRPLIFATAF  164 (280)
T ss_pred             HHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCcc-ccchhHHHHHHH
Confidence            9999878878777888999999988899999999999999998888888899999999999999765 566677777778


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          287 ISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       287 ~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      ++++..+++++||++|+|||++.|++|+|+++|+|+++++
T Consensus       165 ~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i  204 (280)
T PLN02878        165 MCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWL  204 (280)
T ss_pred             HHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHH
Confidence            8888999999999999999999999999999999999875

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=1.2e-37  Score=296.72  Aligned_cols=228  Identities=30%  Similarity=0.538  Sum_probs=187.4

Q ss_pred             chhhhHhhHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCC-ChHHHHHHHHHHHHHHHHHHHHHHhhhccccchh
Q 020367           94 SNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADL-TPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVD  172 (327)
Q Consensus        94 ~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~-~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~D  172 (327)
                      |++.+++..+.+++|+|++|||+.+.+.++++.+.+++.....+. ....+..++.++++...++.+++.+|||+|+|+|
T Consensus         2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD   81 (308)
T PRK12887          2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID   81 (308)
T ss_pred             CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            455677888899999999999999999999988887764322221 1223445555666667777777779999999999


Q ss_pred             ccCCCCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhH
Q 020367          173 KVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN  252 (327)
Q Consensus       173 r~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~  252 (327)
                      ++|||+||+++|++|+++++.++.++.++|+++++..|++.+ +..+++.+++++||.  ||+|+||+++.++++++..+
T Consensus        82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~-~~~~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~  158 (308)
T PRK12887         82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLL-ITVGISLLIGTAYSL--PPIRLKRFPLLAALCIFTVR  158 (308)
T ss_pred             hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHcC--CchhhcccchhHHHHHHHHH
Confidence            999999999999999999999999999999999999996544 455678899999995  99999999999999999888


Q ss_pred             HHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       253 g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      |.++.+|.+.+.+.. .+... .++...++.++++++++.+++++||++|+|||++.|+||+|+++|+|++.++
T Consensus       159 g~i~~~g~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l  230 (308)
T PRK12887        159 GVIVNLGLFLHFQWL-LGGSV-LIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKL  230 (308)
T ss_pred             HHHHHHHHHHHHHHH-Hhccc-cCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHH
Confidence            988888887764322 22222 4566667777888899999999999999999999999999999999998864

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=4e-33  Score=262.78  Aligned_cols=208  Identities=21%  Similarity=0.220  Sum_probs=166.1

Q ss_pred             HHHHHHHchhhhHHHHHHHHHHHHhccccCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCCCCcccc
Q 020367          106 HALYRFMRAYACAGVIIATTSNSLLPVQTLAD-LTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASG  184 (327)
Q Consensus       106 ~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~-~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG  184 (327)
                      |+|++++||++|..++++++.|.+++.....+ +++.  ..++.++++..+.+.++|.+|||+|+|+|++|+|+||+++|
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~--~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G   78 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWW--LMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG   78 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHH--HHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence            46889999999999999999999887432222 2222  12344667889999999999999999999999999999999


Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHHHhh
Q 020367          185 EISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHI  264 (327)
Q Consensus       185 ~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~~~~  264 (327)
                      ++|++++..++.++.++++++++.++.+...+..+++++++++||.  ||+++||+++++++.+++.++.....+.+.  
T Consensus        79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~--  154 (283)
T TIGR01476        79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGHA--  154 (283)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHHH--
Confidence            9999999999999999999999888866634444567778999996  899999999889998887655322222221  


Q ss_pred             HHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          265 QKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       265 ~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                         +.+    .++...++..+..+++..+++++||++|+|+|+++|+||+|+++|+|+++++
T Consensus       155 ---~~~----~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l  209 (283)
T TIGR01476       155 ---IFA----PLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIV  209 (283)
T ss_pred             ---HhC----CCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHH
Confidence               222    2344455556667788889999999999999999999999999999999874

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=4.1e-32  Score=264.22  Aligned_cols=214  Identities=20%  Similarity=0.306  Sum_probs=164.0

Q ss_pred             hhHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCC
Q 020367          100 VFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA-YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPY  178 (327)
Q Consensus       100 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~-~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~  178 (327)
                      ...+++++|++++||++|..+++++++|.... +.+ ++.+. .....+.++++..++++++|++|||+|+|+|++|+|+
T Consensus        80 ~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g~~-~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~  157 (375)
T PLN00012         80 QETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-GNF-HWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPY  157 (375)
T ss_pred             cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-CCC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCC
Confidence            44578899999999999999999999988743 322 21111 1112356677888999999999999999999999999


Q ss_pred             CCccccccChHHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhH
Q 020367          179 LPLASGEISMGTGIAITLASALMSLAYAVMIRS------PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN  252 (327)
Q Consensus       179 RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~------~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~  252 (327)
                      ||+++|++++++++.++.+++++++.+++.+..      +..++..+++++++++||.  ||+++||+++++++.++...
T Consensus       158 Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG~~~  235 (375)
T PLN00012        158 RPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSA--PPLKLKQNGWIGNYALGASY  235 (375)
T ss_pred             CCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcC--CchhhhHhccHhHHHHHHHH
Confidence            999999999999999877777777777665431      2232333457778999996  89999999999998877665


Q ss_pred             HHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       253 g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      +..+..+.+     .+.|    .++...+++.++.+++..++++.||++|+|+|+++|++|+|+++|+|+++++
T Consensus       236 ~~lp~~~g~-----a~~g----~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l  300 (375)
T PLN00012        236 ISLPWWAGQ-----ALFG----TLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWI  300 (375)
T ss_pred             HHHHHHHHH-----HHcC----CCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHH
Confidence            532211111     2344    3455556666777888999999999999999999999999999999999875

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=1.3e-31  Score=256.12  Aligned_cols=212  Identities=21%  Similarity=0.292  Sum_probs=167.2

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHH-HHHHHHHHHHHHHHHHHhhhccccchhccCCCCCC
Q 020367          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTG-LMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLP  180 (327)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~-~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RP  180 (327)
                      .+++++|++++||++|.+++++++.|.+.+. .. ++....... .+.+++++.++++++|++|||+|+|+|++|+|+||
T Consensus        24 ~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~-~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rp  101 (314)
T PRK07566         24 TSIWKARLQLMKPITWFPPMWAFLCGAVSSG-AF-GWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRP  101 (314)
T ss_pred             chHHHHHHHHhCCcchHHHHHHHHHHHHHcC-CC-CcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCCC
Confidence            4678999999999999999999888877543 21 222211111 24456777889999999999999999999999999


Q ss_pred             ccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHH-HHHhH
Q 020367          181 LASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL-LTQFP  259 (327)
Q Consensus       181 lasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~-~~~lg  259 (327)
                      +++|++++++++.++.++.++++.+++.+|++.+. ..+++++++++||.  ||+++||+++++++.+++.+|. ++..|
T Consensus       102 l~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~-l~l~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~~g  178 (314)
T PRK07566        102 IPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFL-AALLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWAG  178 (314)
T ss_pred             CCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHH-HHHHHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999989865553 34567778899996  8889999998899999887753 33343


Q ss_pred             HHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       260 ~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      ++.     +.+.   .++...++..++.+++..+++..||++|+|+|+++|+||+|+++|+|+++++
T Consensus       179 ~~~-----~~~~---~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l  237 (314)
T PRK07566        179 AAA-----FGAG---LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARI  237 (314)
T ss_pred             HHH-----hccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHH
Confidence            332     2221   2344555556666778888999999999999999999999999999988754

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=1.7e-31  Score=254.48  Aligned_cols=214  Identities=21%  Similarity=0.308  Sum_probs=166.2

Q ss_pred             hhHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCC
Q 020367          100 VFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA-YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPY  178 (327)
Q Consensus       100 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~-~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~  178 (327)
                      ...+++++|++++||++|..++++++.|...+ +++ ++... ....++.++++..++++++|.+|||+|+|.|+.|+|+
T Consensus        11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~~~-~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~   88 (306)
T TIGR02056        11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-GNF-HWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEPY   88 (306)
T ss_pred             cchhHHHHHHHHcChHhhHHHHHHHHHHHHHc-CCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCC
Confidence            44567899999999999999999999988754 322 21111 1111344457779999999999999999999999999


Q ss_pred             CCccccccChHHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhH
Q 020367          179 LPLASGEISMGTGIAITLASALMSLAYAVMIRS------PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN  252 (327)
Q Consensus       179 RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~------~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~  252 (327)
                      ||+++|+++++++..++..+.++++++++.+..      +..++..+++++++++||.  ||+++||+++++++.++...
T Consensus        89 Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~~  166 (306)
T TIGR02056        89 RPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGASY  166 (306)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcC--ChhhhhhcccHHHHHHHHHH
Confidence            999999999999999999999888888776531      2333444567788999996  89999999988998887666


Q ss_pred             HHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       253 g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      +..+..+.+.     +.|    .++...++..++.++|+.++++.||++|+|+|+++|+||+|+++|+|+++++
T Consensus       167 ~~~~~~~~~a-----~~g----~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~  231 (306)
T TIGR02056       167 IALPWWAGHA-----LFG----ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWI  231 (306)
T ss_pred             HHHHHHHHHH-----HhC----CCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHH
Confidence            5433333221     234    3455556666777889999999999999999999999999999999998763

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=9.4e-32  Score=252.74  Aligned_cols=202  Identities=22%  Similarity=0.357  Sum_probs=168.7

Q ss_pred             HHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCCCCcc
Q 020367          103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLA  182 (327)
Q Consensus       103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPla  182 (327)
                      +++++|++++||+++..+.++.+.|.++|.+..+   +   ...++++++.+++++++|++||++|+|+|+.|+|+||++
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~---~---~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~   75 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP---L---DEALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP   75 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc---h---HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence            5789999999999999999999999988865422   2   124667788999999999999999999999999999999


Q ss_pred             ccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHHH
Q 020367          183 SGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYV  262 (327)
Q Consensus       183 sG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~~  262 (327)
                      +|++|+++++.++.++.++++.+++.+|+..+.. .+++.++++.||.     ++||++++++++++..+|.++..|+..
T Consensus        76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~  149 (279)
T PRK12884         76 SGRISRREALLLAILLFILGLIAAYLISPLAFLV-VILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA  149 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888755544 4567778999996     689999889999998888766666542


Q ss_pred             hhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          263 HIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       263 ~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                           + +.    .+...+++....++|+.+.++++|++|+|+|+++|+||+|+++|+|++.++
T Consensus       150 -----~-~~----~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~  203 (279)
T PRK12884        150 -----V-GE----LNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRI  203 (279)
T ss_pred             -----h-CC----CchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHH
Confidence                 1 22    122445555666788889999999999999999999999999999998764

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.98  E-value=9e-32  Score=253.15  Aligned_cols=201  Identities=21%  Similarity=0.314  Sum_probs=166.7

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCCCCccc
Q 020367          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS  183 (327)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlas  183 (327)
                      ++++|++++||+++..++++.+.|.+++.+...+  +.   ..++++++.+++++++|++|||+|+|+|++|+|+||+++
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~--~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s   76 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKID--LK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS   76 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCcc--hH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence            3689999999999999999999998888543222  22   256678899999999999999999999999999999999


Q ss_pred             cccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHHHh
Q 020367          184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH  263 (327)
Q Consensus       184 G~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~~~  263 (327)
                      |++|+++++.++.++.++++.+++.++++.+... +++.++.++||.     ++||++.+++++++...|..+..|+...
T Consensus        77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~~  150 (279)
T PRK09573         77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIA-LLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLAV  150 (279)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998887666444 456667899995     6899999999999998887666765532


Q ss_pred             hHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       264 ~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                           .+      ....++++...++|+.++++.||++|+|+|+++|+||+|+++|+|++.++
T Consensus       151 -----~~------~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~  202 (279)
T PRK09573        151 -----FN------VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYI  202 (279)
T ss_pred             -----cc------chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHH
Confidence                 22      11233344555678888999999999999999999999999999998764

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.98  E-value=4.3e-31  Score=253.61  Aligned_cols=213  Identities=21%  Similarity=0.328  Sum_probs=160.8

Q ss_pred             hHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccC-CCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCCC
Q 020367          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTL-ADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL  179 (327)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~-~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~R  179 (327)
                      ...++|+|++++||++|+ .+++++.|.++|.+.. ++.... ...+...++...+...++|++|||+|+|+|++|+|.|
T Consensus         8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~-~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR   85 (331)
T PRK12392          8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDY-LLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR   85 (331)
T ss_pred             hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHH-HHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence            345789999999999998 6666777777876432 222111 1112222334455667889999999999999999999


Q ss_pred             CccccccChHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhH
Q 020367          180 PLASGEISMGTGIAITLASALMSLAYAVMIRS-------PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN  252 (327)
Q Consensus       180 PlasG~ls~~~a~~~~~~~~~l~l~la~~lg~-------~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~  252 (327)
                      |+++|++|+++++.+..++.+++++++++++.       +.+++..+++++++++||.  ||+++||++++++..+++.+
T Consensus        86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~  163 (331)
T PRK12392         86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSY  163 (331)
T ss_pred             CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHH
Confidence            99999999999999999999998888877652       2333334567788999996  89999999988888888777


Q ss_pred             HHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       253 g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      +.....+++     .+++    .++...++..++.++|+.+++++||++|+|+|++.|+||+|+++|++++.++
T Consensus       164 ~~~~~~~~~-----a~~g----~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i  228 (331)
T PRK12392        164 GFITFLSAN-----ALFS----DIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLV  228 (331)
T ss_pred             HHHHHHHHH-----HHhc----CCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHH
Confidence            654333322     2334    2344555566677888999999999999999999999999999999998654

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.98  E-value=1.2e-31  Score=251.89  Aligned_cols=203  Identities=20%  Similarity=0.244  Sum_probs=164.8

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCCCCccc
Q 020367          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS  183 (327)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlas  183 (327)
                      ++|+|++++||+++..++++.+.|.+++.+...+  .   ...++++++.+++++++|++||++|+|+|++|+|+||+++
T Consensus         3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~--~---~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~   77 (276)
T PRK12882          3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS--P---SLTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS   77 (276)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch--H---HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence            4789999999999999999999999988554221  1   1145678889999999999999999999999999999999


Q ss_pred             cccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHHHh
Q 020367          184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH  263 (327)
Q Consensus       184 G~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~~~  263 (327)
                      |++|+++++.++.++.++++.+++.+++..+.. .+++.++.++||.     |+||++.+++++++...|.++.+|... 
T Consensus        78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~-~~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~-  150 (276)
T PRK12882         78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAI-ALFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGAA-  150 (276)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHHH-
Confidence            999999999999999999999999988655543 3456667889996     799999899999888777555555432 


Q ss_pred             hHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       264 ~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                           .+..   .....+.+.++.+++..+++++||++|+|+|+++|+||+|+++|+|++.++
T Consensus       151 -----~~~~---~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~  205 (276)
T PRK12882        151 -----VGTE---GLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYV  205 (276)
T ss_pred             -----hccc---chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHH
Confidence                 2211   122233444555677889999999999999999999999999999999875

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.97  E-value=3.7e-31  Score=248.66  Aligned_cols=201  Identities=24%  Similarity=0.325  Sum_probs=161.9

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCCCCccc
Q 020367          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS  183 (327)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlas  183 (327)
                      .+|+|++++||+++..+.++.+.|.+++.+..++  +.   ..++++++.++.++++|++|||+|+|+|+.|+|+||+++
T Consensus         2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s   76 (277)
T PRK12883          2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IK---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR   76 (277)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HH---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence            3689999999999999999999999887554332  21   135566788888999999999999999999999999999


Q ss_pred             cccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHHHh
Q 020367          184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH  263 (327)
Q Consensus       184 G~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~~~  263 (327)
                      |+++++++..++.++.++|+++++.+|++.+.+. +.+.++++.|+.     ++|+.+.++++.++..+|..+..|++. 
T Consensus        77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a-  149 (277)
T PRK12883         77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFA-LGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIA-  149 (277)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHH-
Confidence            9999999999999999999999998997666444 456678999997     789998889999998888655555432 


Q ss_pred             hHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       264 ~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                          + +    .++...+. ..+.+++...+++.||++|+|+|+++|+||+|+++|+|+++++
T Consensus       150 ----~-~----~~~~~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~  202 (277)
T PRK12883        150 ----V-G----RIGLAGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYI  202 (277)
T ss_pred             ----h-c----cccHHHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHH
Confidence                1 2    22322222 2334556678899999999999999999999999999998764

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.97  E-value=3.4e-30  Score=243.64  Aligned_cols=205  Identities=23%  Similarity=0.310  Sum_probs=166.8

Q ss_pred             hHHHHHHHHHHHchhhhHHHHHHHHH---HHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCC
Q 020367          101 FLKKFHALYRFMRAYACAGVIIATTS---NSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP  177 (327)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~---g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~  177 (327)
                      .+.+++.+.+++|+++++++.+.+.+   |..++...++   .  +...++++++++++.+++|++||+.|+|+||+|+|
T Consensus         6 ~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~---~--~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~r   80 (289)
T COG0382           6 LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLP---S--LKLLLLAFLAFFLARSAGYVINDLADREIDRINPR   80 (289)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCc---h--HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCC
Confidence            44566777777777777666665544   4444442222   1  34567888999999999999999999999999998


Q ss_pred             --CCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHH
Q 020367          178 --YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL  255 (327)
Q Consensus       178 --~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~  255 (327)
                        +||+++|++|+++++.+..+++++++.+++.++++.+.+ .+++.++.++|.      ++||.+.+++++++...+..
T Consensus        81 t~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l-~~~~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~~  153 (289)
T COG0382          81 TKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLL-SLAALVLALAYP------FLKRFTFLPQLVLGLAFGLG  153 (289)
T ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHH------HhhcCCchHHHHHHHHHHHH
Confidence              999999999999999999999999999999999766544 467888999994      69999999999999999877


Q ss_pred             HHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       256 ~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      +..|+...     .|    ..+...+++.++..+|+.++++++|++|+|+|++.|++|+|+.+|++++.++
T Consensus       154 ~~~g~~a~-----~~----~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l  215 (289)
T COG0382         154 ALAGAAAV-----GG----SLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALAL  215 (289)
T ss_pred             HHHHHHHH-----hC----ccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHH
Confidence            77776542     23    2244566777788899999999999999999999999999999999988653

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.97  E-value=3.3e-30  Score=242.85  Aligned_cols=204  Identities=21%  Similarity=0.244  Sum_probs=165.5

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccC--CCCCCc
Q 020367          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPL  181 (327)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~n--k~~RPl  181 (327)
                      ++++|++++||++...+.+..+.|.++|.+...+  +.   ..++++++.+++++++|++|||+|+|+|++|  +|+||+
T Consensus         1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~~--~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl   75 (282)
T TIGR01475         1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLPG--LK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL   75 (282)
T ss_pred             CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence            3689999999999999988888888888654333  32   2566788999999999999999999999998  679999


Q ss_pred             cccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHH
Q 020367          182 ASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY  261 (327)
Q Consensus       182 asG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~  261 (327)
                      ++|++|+++++.++.++.++++++++.++...+.+. ..+.++.+.|+.      +||+..++++..+...+.++..|+.
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~  148 (282)
T TIGR01475        76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILS-PLVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWV  148 (282)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------HhccccccHHHHHHHHHHHHHHHHH
Confidence            999999999999999888888888888887665443 345556789984      8999999999999988877777765


Q ss_pred             HhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       262 ~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      .     +.|..  ......++..+..++|+.+.+++||++|+|+|+++|+||+|+++|+|+++++
T Consensus       149 a-----~~g~~--~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~  206 (282)
T TIGR01475       149 A-----VIGTI--SFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKI  206 (282)
T ss_pred             H-----HhCCc--cchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHH
Confidence            4     22321  1113445556677889999999999999999999999999999999887654

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=8.3e-30  Score=241.15  Aligned_cols=207  Identities=20%  Similarity=0.227  Sum_probs=170.5

Q ss_pred             hHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccC---CCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC-
Q 020367          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTL---ADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-  176 (327)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~---~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk-  176 (327)
                      .++++++|++++||++.+.+....+.|.++|....   ..+++.   .+++++++.+++++++|++|||+|+|+|++|+ 
T Consensus         4 ~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~R   80 (291)
T PRK12874          4 FTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKDNPR   80 (291)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Confidence            45689999999999999999999888888875211   122332   25667788899999999999999999999987 


Q ss_pred             -CCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHH
Q 020367          177 -PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL  255 (327)
Q Consensus       177 -~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~  255 (327)
                       ++||+++|++|+++++.++.++.++++.+++.+++.++.+. +..+++...|+.      +||+..++++.+++..|.+
T Consensus        81 T~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~~~  153 (291)
T PRK12874         81 TANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLGGYSY------FKRFSSLAHLVLGLSLGLA  153 (291)
T ss_pred             CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------hcccccccHHHHHHHHHHH
Confidence             68999999999999999999998888888888887666554 345566789995      8999999999999998888


Q ss_pred             HHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       256 ~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      +.+|+..     +.|    ..+.+.+++.+..++|+.+.+++++++|+|+|+++|++|+|+++|++++.++
T Consensus       154 ~l~G~~a-----v~g----~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~  215 (291)
T PRK12874        154 PIAGVVA-----VLG----EIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFI  215 (291)
T ss_pred             HHHHHHH-----HcC----CCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHH
Confidence            8888664     334    2344455566677899999999999999999999999999999999988754

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.97  E-value=1.5e-29  Score=237.55  Aligned_cols=205  Identities=19%  Similarity=0.240  Sum_probs=156.2

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCCCCc
Q 020367          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPL  181 (327)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPl  181 (327)
                      ...++.+++.+||.+|+.++.++.+|...+.+. .|..+..   ++++++.....+.+.|.+|||+|+|+|++|+|+||+
T Consensus         9 ~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~-~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~i   84 (292)
T PRK13595          9 LLPLRRLLLISRPALWVNTVGTLVTGVWLTGHL-YTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGGW   84 (292)
T ss_pred             hhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCc-ccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCC
Confidence            356778999999999999999999998777542 3321122   345556667788899999999999999999999999


Q ss_pred             cccccChHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHH
Q 020367          182 ASGEISMGTGIAITLASALM----SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ  257 (327)
Q Consensus       182 asG~ls~~~a~~~~~~~~~l----~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~  257 (327)
                      ++|++|++++..+..++.++    ++.+++..|++.+.+ .+++.++.++||.  ||+|+|++|++++++. ...|.+..
T Consensus        85 ~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l-~~v~~~l~~~YS~--pPlRlK~rp~l~~l~~-~~~g~p~~  160 (292)
T PRK13595         85 QGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLL-LLLYAALFVGYSL--PPLRFKARPFLDGLSN-AAYALPLA  160 (292)
T ss_pred             CcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHcc--CccchhcCcchhHHHH-HHHHHHHH
Confidence            99999999998865555443    556677777655543 4567789999995  9999999999998886 34454433


Q ss_pred             hHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       258 lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      .+.      .+.|.+    +.+.+  .....+|..+.++++|++|+|+||+.|+||+|+++|+|++.++
T Consensus       161 ~~~------~~~g~~----~~~~~--l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~  217 (292)
T PRK13595        161 LPA------LALGAP----VPWPP--LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALY  217 (292)
T ss_pred             HHH------HHcCCc----chHHH--HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHH
Confidence            331      233432    22222  2344677899999999999999999999999999999998753

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=1.3e-29  Score=240.38  Aligned_cols=209  Identities=17%  Similarity=0.260  Sum_probs=164.9

Q ss_pred             HhhHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccC--C
Q 020367           99 NVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--K  176 (327)
Q Consensus        99 ~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~n--k  176 (327)
                      ...+.++++|++++||++.+...++.+.|.++|.+..++  +.   ..++.+++.+++++++|++||++|+|+|++|  +
T Consensus         9 ~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~--~~---~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT   83 (300)
T PRK13106          9 NNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPP--IS---TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRT   83 (300)
T ss_pred             hhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCcc
Confidence            335678999999999999999998888999888654333  32   2456778999999999999999999999998  5


Q ss_pred             CCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHH
Q 020367          177 PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT  256 (327)
Q Consensus       177 ~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~  256 (327)
                      ++||+++|++|+++++.+..++.+.++.+++.+|+.++.+.. ++.++...|+.      +||+..++++.+++..|..+
T Consensus        84 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~  156 (300)
T PRK13106         84 KNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHLASIQGLAV  156 (300)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHHHHHHHHHH
Confidence            689999999999999999877777888888888876665443 44455678984      89999999999999888766


Q ss_pred             HhHHHHhhHHHhhCCCCc----cCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeeccccccc
Q 020367          257 QFPVYVHIQKYVLGRPLE----IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSK  325 (327)
Q Consensus       257 ~lg~~~~~~~~v~g~~~~----~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~  325 (327)
                      ..|+..     +.|....    ..+...+++.+...+|+.+.+++|+++|+|+|++.|+||+|+++| +++.+
T Consensus       157 ~~G~~a-----~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~  223 (300)
T PRK13106        157 FSGAVA-----VLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALT  223 (300)
T ss_pred             HHHHHH-----HcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHH
Confidence            677653     2232100    111223444455678999999999999999999999999999999 77654

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.97  E-value=2.4e-29  Score=237.43  Aligned_cols=206  Identities=19%  Similarity=0.218  Sum_probs=165.1

Q ss_pred             hHHHHHHHHHHHchhhhHH---HHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC-
Q 020367          101 FLKKFHALYRFMRAYACAG---VIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-  176 (327)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~---~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk-  176 (327)
                      ..+++++|++++||++...   ..++++.|.++|.... ..++.   ..++++++.+++++++|++|||+|+|.|+.|+ 
T Consensus         3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R   78 (285)
T PRK12847          3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR   78 (285)
T ss_pred             hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence            3457899999999998765   4466777888875432 12232   25667888899999999999999999999754 


Q ss_pred             -CCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHH
Q 020367          177 -PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL  255 (327)
Q Consensus       177 -~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~  255 (327)
                       ++||+++|+++++++..++.++.++++.+++.+|+..+.. .+++.++.+.||.      .||+..++++..++..+..
T Consensus        79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~-~~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~  151 (285)
T PRK12847         79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYL-SFIAVILIVLYPL------MKRFFYWPQLFLGFTFNMG  151 (285)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHhccc------cccCCcccHHHHHHHHHHH
Confidence             5899999999999999999999999999998888655544 3456677899995      7888888998888877766


Q ss_pred             HHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       256 ~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      +..|+..     +.|    .++...+++.+..++|+.+.+++++++|+|+|+++|+||+|+++|+|++.++
T Consensus       152 ~l~~~~a-----~~g----~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~  213 (285)
T PRK12847        152 ILMAFAA-----VQN----QLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYI  213 (285)
T ss_pred             HHHHHHH-----HcC----CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHH
Confidence            6666553     223    3455566667778899999999999999999999999999999999988764

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.97  E-value=4.2e-29  Score=236.37  Aligned_cols=207  Identities=16%  Similarity=0.187  Sum_probs=164.7

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccc--chhc--cCCCCC
Q 020367          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDV--EVDK--VNKPYL  179 (327)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~--e~Dr--~nk~~R  179 (327)
                      .+++|++++||+++..++++++.|.++|... .++++.   ..++++++.++++.++|.+|||+|+  +.|+  .++|+|
T Consensus         2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r   77 (293)
T PRK06080          2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR   77 (293)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence            3688999999999999999999999888542 334442   3567788999999999999999998  4675  467899


Q ss_pred             CccccccChHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHH
Q 020367          180 PLASGEISMGTGIAITLASALMSLAYAVMI----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL  255 (327)
Q Consensus       180 PlasG~ls~~~a~~~~~~~~~l~l~la~~l----g~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~  255 (327)
                      |+++|++|++++..++..+.+++++++..+    ++ ..++..+++++++++||.  ||.++|+++ ++++..++.+|..
T Consensus        78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~~~~~~~Ys~--~p~~~~~~g-lge~~~~~~~G~~  153 (293)
T PRK06080         78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGW-WLLLLGLLCIAAAILYTG--GPKPYGYTG-LGELFVGVFFGLV  153 (293)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhhhhcC--CCCccCCCC-cHHHHHHHHHHHH
Confidence            999999999999988888887766665443    54 333444567788899996  888899988 5888888888865


Q ss_pred             HHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       256 ~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      ...+.+..     ..+   .++...++..++.++++...++.||++|+|+|+++|+||+|+++|+|+++++
T Consensus       154 ~~~~~~~~-----~~~---~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~  216 (293)
T PRK06080        154 IVLGTYYL-----QAG---TVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRL  216 (293)
T ss_pred             HHHHHHHH-----hcC---CCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHH
Confidence            55554321     111   3455667777788899999999999999999999999999999999998764

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.97  E-value=4.4e-29  Score=235.04  Aligned_cols=204  Identities=14%  Similarity=0.166  Sum_probs=160.2

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC--CCCCc
Q 020367          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPL  181 (327)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk--~~RPl  181 (327)
                      ++++|++++||++.....++.+.|.+++.+...  ++.   ..++++++.+++++++|++|||+|+|+|++|+  |+||+
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~--~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl   75 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHGV--SWL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT   75 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCC--CHH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence            368999999999999999999999988854322  232   24567788899999999999999999999976  69999


Q ss_pred             cccccChHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHH
Q 020367          182 ASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPV  260 (327)
Q Consensus       182 asG~ls~~~a~~~~~~~~~l~l~la~~-lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~  260 (327)
                      ++|++|++++..++.+++++++.+++. +++.+.....+...+..+.||.     ++||+++...+..++..+.++..|+
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~  150 (279)
T PRK12869         76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWLNIVIGGFAGNAAALAGY  150 (279)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999887 7764433333445567789996     6899998655555544445555554


Q ss_pred             HHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          261 YVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       261 ~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      +.     ..|    .++...+++.+.+++|+.+.....+++|+|+|+++|+||+|+++|+|+++++
T Consensus       151 ~a-----~~g----~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~  207 (279)
T PRK12869        151 AS-----GTG----SLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRA  207 (279)
T ss_pred             HH-----HhC----CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHH
Confidence            43     223    3455556666777888888877788999999999999999999999988754

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=4.3e-29  Score=236.33  Aligned_cols=204  Identities=19%  Similarity=0.182  Sum_probs=165.4

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC--CCC
Q 020367          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYL  179 (327)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk--~~R  179 (327)
                      -+++++|++++||++.+.+..+.+.|.++|..+.++  +   ...++.+++.+++++++|++|||+|+|+|++|+  ++|
T Consensus         5 ~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~---~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R   79 (291)
T PRK12886          5 LTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--A---SQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGR   79 (291)
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--H---HHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCC
Confidence            357899999999999999988888898888654333  2   124566788999999999999999999999987  589


Q ss_pred             CccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhH
Q 020367          180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP  259 (327)
Q Consensus       180 PlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg  259 (327)
                      |+++|++|++++..+...+.+.++.+++.+|++.+.+.+ ++.++.+.|+.      +||+..++++..++..+.++..|
T Consensus        80 PL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~g  152 (291)
T PRK12886         80 AIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLALAPLGA  152 (291)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHHHHHHH
Confidence            999999999999988777777776777778876665443 45556789994      79999999999998887776666


Q ss_pred             HHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       260 ~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      ++.     +.|    .++...+++.+..++|+.+.+++++++|+|+|+++|+||+|+++|++++.++
T Consensus       153 ~~a-----~~g----~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~  210 (291)
T PRK12886        153 WIA-----IRG----TIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWI  210 (291)
T ss_pred             HHH-----HcC----CCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHH
Confidence            553     234    3345556666777889999999999999999999999999999999988764

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=3.9e-29  Score=235.56  Aligned_cols=203  Identities=18%  Similarity=0.164  Sum_probs=164.2

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccC--CCCCCc
Q 020367          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPL  181 (327)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~n--k~~RPl  181 (327)
                      ++|+|++++||++.+.++...+.|.++|.+...+  +.   ..++.+++.+++.+++|++||+.|+|+|++|  +++||+
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~~--~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL   76 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYIH--PI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL   76 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence            4789999999999999999999999988653222  22   2345667888999999999999999999998  569999


Q ss_pred             cccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHH
Q 020367          182 ASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY  261 (327)
Q Consensus       182 asG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~  261 (327)
                      ++|++|+++++.+..+++++++.+++.+|+.++.+.. ....+...|+      .+||+..+.++.+|...|..+..|+.
T Consensus        77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp------~~KR~t~~~~~~lG~~~g~~~l~g~~  149 (286)
T PRK12895         77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDP------FLKRYTAWRHIYMGSIIGLGVLAGYL  149 (286)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHH------HHHhCccccHHHHHHHHHhHHHHHHH
Confidence            9999999999999999999999999999987665443 3444555566      48999999999999988877777765


Q ss_pred             HhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeeccccccc
Q 020367          262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSK  325 (327)
Q Consensus       262 ~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~  325 (327)
                      .     +.|..  .+....+++++...+|+.+.+++++++|+|+|++.|+||+|+++|++++.+
T Consensus       150 A-----v~g~~--~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~  206 (286)
T PRK12895        150 A-----VIPAF--PYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLY  206 (286)
T ss_pred             H-----HcCCC--CchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHH
Confidence            3     33321  222233455667788999999999999999999999999999999998764

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.96  E-value=8e-29  Score=235.08  Aligned_cols=205  Identities=13%  Similarity=0.120  Sum_probs=161.4

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC--CCC
Q 020367          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYL  179 (327)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk--~~R  179 (327)
                      ++++++|++++||++++.+.++.+.|.++|.+...  ++.   ..++++++.+++++++|++|||+|+|.|+.|+  |+|
T Consensus         7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~~--~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~R   81 (296)
T PRK04375          7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPGVP--PLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNR   81 (296)
T ss_pred             hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCC
Confidence            45799999999999999999999999999864322  232   24667889999999999999999999999976  799


Q ss_pred             CccccccChHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhH-HHHHH
Q 020367          180 PLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN-GLLTQ  257 (327)
Q Consensus       180 PlasG~ls~~~a~~~~~~~~~l~l~la~~-lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~-g~~~~  257 (327)
                      |+++|++|++++..++.++.++|+.+++. .+.....+..+......+.||.     ++||++. ++..++... +.++.
T Consensus        82 pl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~l  155 (296)
T PRK04375         82 PLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPPL  155 (296)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHHH
Confidence            99999999999999999999999988755 4654454333322335678996     6999996 554444444 35666


Q ss_pred             hHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       258 lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      .|++.     +.|    .++...+++++..++|+...+..+.++|+|+|+++|+||+|+++|+++++++
T Consensus       156 ~g~~a-----~~g----~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~  215 (296)
T PRK04375        156 IGWAA-----VTG----SLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQ  215 (296)
T ss_pred             HHHHH-----hCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHH
Confidence            66653     223    3455566667778889998999999999999999999999999999988764

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.96  E-value=4.2e-29  Score=236.35  Aligned_cols=204  Identities=18%  Similarity=0.203  Sum_probs=163.8

Q ss_pred             hHHHHHHHHHHHchhhhHHHH---HHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC-
Q 020367          101 FLKKFHALYRFMRAYACAGVI---IATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-  176 (327)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~---l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk-  176 (327)
                      .++++++|++++||++.....   ++.+.|.++|.+..++  +.   ..++++++.+++++++|++||++|+|+|+.++ 
T Consensus         5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~--~~---~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R   79 (290)
T PRK12870          5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPP--LP---LVGIIILGALATSAAGCVVNDLWDRDIDPQVER   79 (290)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence            346889999999999977666   4567777777654333  22   24566788899999999999999999998644 


Q ss_pred             -CCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHH
Q 020367          177 -PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL  255 (327)
Q Consensus       177 -~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~  255 (327)
                       ++||+++|++|++++..++.++.++++.+++.+++..+.+. +.+.++.+.|+.      .||+..++++.+++..+..
T Consensus        80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~  152 (290)
T PRK12870         80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLC-VAAVPVIFLYPL------AKRVFPVPQLVLAIAWGFA  152 (290)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHhhh------hhhccccceeeehHHHHhH
Confidence             38999999999999999999999999999999987666544 346667789985      7888888888888888876


Q ss_pred             HHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeeccccccc
Q 020367          256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSK  325 (327)
Q Consensus       256 ~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~  325 (327)
                      +..|+..     +.|    .++...+++++..++|+.+.+++++++|+|+|+++|+||+|+++|++++.+
T Consensus       153 ~l~g~~a-----~~g----~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~  213 (290)
T PRK12870        153 VLISWSA-----VTG----HLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEA  213 (290)
T ss_pred             HHHHHHH-----HcC----CCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHH
Confidence            6666553     233    334455566677789999999999999999999999999999999998764

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=1.1e-28  Score=234.26  Aligned_cols=206  Identities=16%  Similarity=0.185  Sum_probs=165.1

Q ss_pred             HHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC-----C
Q 020367          103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-----P  177 (327)
Q Consensus       103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk-----~  177 (327)
                      .++|.|++++||+++..++.+++.|.++|.....++++.   ..++++++..++++++|.+|||+|.+.|..++     +
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~   78 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPL---LGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR   78 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence            368899999999999999999999999987544556553   35778899999999999999999966555544     7


Q ss_pred             CCCccccccChHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHH
Q 020367          178 YLPLASGEISMGTGIAITLASALMSLAYAVM----IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG  253 (327)
Q Consensus       178 ~RPlasG~ls~~~a~~~~~~~~~l~l~la~~----lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g  253 (327)
                      +||+++|+++++++...+.++..+++.++..    .++ ..++..+++.++++.||.  ||+++|+++ +|++.+++.+|
T Consensus        79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~-~~l~l~~~~~~~~~~Yt~--~P~~lky~g-lGe~~v~~~~g  154 (296)
T PRK05951         79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGI-GAVTLALLGVFLWTCYMG--PPFFLKYRW-LGEHLVFYAWS  154 (296)
T ss_pred             CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHcC--CCcccCCCC-chHHHHHHHHH
Confidence            8999999999999999888877766655433    353 343444678889999996  899999887 59999999998


Q ss_pred             HHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeeccccc
Q 020367          254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERV  323 (327)
Q Consensus       254 ~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a  323 (327)
                      ..+.+|.+..     ..+   .++...+...+...+++....+.||++|+|+|++.|+||+|+++|+|++
T Consensus       155 ~~~vlg~~~~-----~~~---~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a  216 (296)
T PRK05951        155 HMLVMGLIYV-----WLG---NLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA  216 (296)
T ss_pred             HHHHHHHHHH-----HhC---cccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH
Confidence            7666776542     222   3444556666777888888999999999999999999999999999998

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.96  E-value=1.5e-28  Score=235.11  Aligned_cols=207  Identities=13%  Similarity=0.058  Sum_probs=164.1

Q ss_pred             HHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC----CCCC
Q 020367          105 FHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK----PYLP  180 (327)
Q Consensus       105 l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk----~~RP  180 (327)
                      ++.|++++||++...++++++.|.++|.....++++.   ..++++++.++.++++|.+|||+|.+.|..++    +.|+
T Consensus         3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~---~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~   79 (317)
T PRK13387          3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWL---LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG   79 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence            6789999999999999999999999986544455553   35677888899999999999999987666554    6799


Q ss_pred             ccccccChHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHH
Q 020367          181 LASGEISMGTGIAITLASALMSLA----YAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT  256 (327)
Q Consensus       181 lasG~ls~~~a~~~~~~~~~l~l~----la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~  256 (327)
                      +++|.++++++...+..+++++++    +.+..|+ .++...+++++.+++||.  ||+++||++ +|++.+++.+|+.+
T Consensus        80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~-~~l~igl~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~  155 (317)
T PRK13387         80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSW-LLLVIGLICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGI  155 (317)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcH-HHHHHHHHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHH
Confidence            999999999999988888777766    4555564 454556678889999996  899999999 69999999998765


Q ss_pred             HhHHHHhhHHHhhCCCCccCcHHHH--------------------HHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccce
Q 020367          257 QFPVYVHIQKYVLGRPLEIFTRPLM--------------------FATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSV  316 (327)
Q Consensus       257 ~lg~~~~~~~~v~g~~~~~~~~~~i--------------------~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv  316 (327)
                      ..|.+.. ++   +    .++...+                    +..+...+.+..+++.||++|+|+|+++|+||+|+
T Consensus       156 v~g~~yv-~t---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v  227 (317)
T PRK13387        156 FLLAVYI-NT---N----TITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY  227 (317)
T ss_pred             HHHHHHH-hc---C----CCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeee
Confidence            5655432 21   1    1121111                    24556677778889999999999999999999999


Q ss_pred             eecccccccc
Q 020367          317 MLGKERVSKL  326 (327)
Q Consensus       317 ~lG~~~a~~l  326 (327)
                      ++|+|++.++
T Consensus       228 ~lG~~~a~~l  237 (317)
T PRK13387        228 YIGREKGVVL  237 (317)
T ss_pred             eEcHHhHHHH
Confidence            9999998764

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.96  E-value=1.5e-28  Score=231.77  Aligned_cols=204  Identities=20%  Similarity=0.202  Sum_probs=161.3

Q ss_pred             HHHHHHHHHHHchhhhHHHHHH---HHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC--
Q 020367          102 LKKFHALYRFMRAYACAGVIIA---TTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--  176 (327)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~---~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk--  176 (327)
                      ++++++|++++|++++..+.+.   .+.|.++|.+..++  +.   ..++++++.+++++++|++||++|+|+|+.++  
T Consensus         2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt   76 (282)
T PRK12848          2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT   76 (282)
T ss_pred             chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence            3578999999998877666544   56677777554333  22   24556678889999999999999999998754  


Q ss_pred             CCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHH
Q 020367          177 PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT  256 (327)
Q Consensus       177 ~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~  256 (327)
                      ++||+++|++|++++..++.++.++++++++.+++..+.+. +++.++.+.|+.      .||+..++++..++..|.++
T Consensus        77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~  149 (282)
T PRK12848         77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALALAWIYPF------MKRYTHLPQVVLGAAFGWGI  149 (282)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh------HHhcCcccHHHHHHHHHHHH
Confidence            58999999999999999999999999999988887555443 456667889974      78888889988888888766


Q ss_pred             HhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          257 QFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       257 ~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      .+|+..     +.|    .++...+++++...+|+...++.++++|+|+|+++|+||+|+++|+|++.++
T Consensus       150 ~~g~~a-----~~~----~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~  210 (282)
T PRK12848        150 PMAFAA-----VQG----SVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLII  210 (282)
T ss_pred             HHHHHH-----HhC----CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHH
Confidence            667653     223    3455556666777889999999999999999999999999999999987653

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=2.1e-28  Score=230.91  Aligned_cols=202  Identities=15%  Similarity=0.120  Sum_probs=162.0

Q ss_pred             HHHHHHHHchhhhHHHHHHHHHHHHhcccc-CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC--CCCCc
Q 020367          105 FHALYRFMRAYACAGVIIATTSNSLLPVQT-LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPL  181 (327)
Q Consensus       105 l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~-~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk--~~RPl  181 (327)
                      +++|+++.||++.+......+.+.+++... ...+++.   ..++.+++.+++++++|.+||++|+|+|++|+  ++||+
T Consensus         2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL   78 (284)
T PRK12888          2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGREL   78 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCC
Confidence            689999999999988877766666655311 0122232   24667889999999999999999999999987  68999


Q ss_pred             cccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHH
Q 020367          182 ASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY  261 (327)
Q Consensus       182 asG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~  261 (327)
                      ++|++|+++++.++..++++++.++..+++..+... .++++....|+.      .||+..++++.+++..+.++..|++
T Consensus        79 ~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g~~  151 (284)
T PRK12888         79 VTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALA-PLAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVGAWI  151 (284)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHHHHH
Confidence            999999999999998888888888888887655443 345556678984      7999999999998888776667765


Q ss_pred             HhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeeccccccc
Q 020367          262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSK  325 (327)
Q Consensus       262 ~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~  325 (327)
                      .     +.|    .++...+++.+..++|+.+.+++++++|+|+|++.|+||+|+++|+|++.+
T Consensus       152 a-----~~g----~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~  206 (284)
T PRK12888        152 A-----VTG----TWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALW  206 (284)
T ss_pred             H-----HcC----CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHH
Confidence            3     234    335556666777889999999999999999999999999999999998875

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.96  E-value=4.3e-28  Score=230.85  Aligned_cols=207  Identities=15%  Similarity=0.212  Sum_probs=166.8

Q ss_pred             hHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC--CC
Q 020367          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PY  178 (327)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk--~~  178 (327)
                      .+.++++|++++||+++..+.++++.|.+++.+.  +.++..   .++++++.+++++++|++|||+|+|+|+.++  ++
T Consensus         9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~   83 (306)
T PRK13362          9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRN   83 (306)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCC
Confidence            3457899999999999999999999999988543  223322   4556788899999999999999999998753  58


Q ss_pred             CCccccccChHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHH
Q 020367          179 LPLASGEISMGTGIAITLASALMSLAYAV-MIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ  257 (327)
Q Consensus       179 RPlasG~ls~~~a~~~~~~~~~l~l~la~-~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~  257 (327)
                      ||+++|++|+++++.++.++.++|+.++. ..+........+..++..+.||.     ++||++..+++..++..+.++.
T Consensus        84 RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l  158 (306)
T PRK13362         84 RVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPV  158 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHH
Confidence            99999999999999999999999988654 45654443333334445679995     6999999999988888888888


Q ss_pred             hHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       258 lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      .|++.     +.|    .++...++++.++++|+.......++.|.|+|+++|++|+|+++|+|++++.
T Consensus       159 ~G~~a-----~~g----~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~  218 (306)
T PRK13362        159 VGYCA-----VTG----QFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLH  218 (306)
T ss_pred             HHHHH-----HcC----CCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHH
Confidence            88764     223    3355566667788899999999999999999999999999999999988753

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.96  E-value=5.7e-28  Score=230.82  Aligned_cols=210  Identities=17%  Similarity=0.111  Sum_probs=169.0

Q ss_pred             hHhhHHHHHHHHHHH---chhhhHHHHHHHHHHHHhccccCC---CCChHHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 020367           98 LNVFLKKFHALYRFM---RAYACAGVIIATTSNSLLPVQTLA---DLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEV  171 (327)
Q Consensus        98 ~~~~~~~l~~~~~l~---Rp~~~~~~~l~~~~g~llA~~~~~---~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~  171 (327)
                      ....+.++++|++++   ||......+++.+.|.++|.+...   ..++.   ..++++++.+++++++|++|||+|+|+
T Consensus        23 ~~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~i   99 (314)
T PRK12878         23 DRRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDI   99 (314)
T ss_pred             hhhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344668999999999   888999999999999999865311   22222   256778899999999999999999999


Q ss_pred             hccCC--CCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHH
Q 020367          172 DKVNK--PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMV  249 (327)
Q Consensus       172 Dr~nk--~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~  249 (327)
                      |+.++  ++||+++|++|++++..++.++.++|+.+.+..|++.+.+. ++++++.+.|+.      .||+........+
T Consensus       100 D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~G  172 (314)
T PRK12878        100 DAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASLAIVAAYPF------MKRITWWPQFFLG  172 (314)
T ss_pred             ccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhcCCcchHHHH
Confidence            98755  58999999999999999999999999999888886555443 456677899984      7888777877777


Q ss_pred             HhHHHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          250 SLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       250 ~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      +..+.++..|++.     +.|    .++...+++++...+|+...+.+++++|+|+|+++|+||+|+++|+++++++
T Consensus       173 l~~~~~~l~g~~a-----~~g----~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~  240 (314)
T PRK12878        173 LAFSWGALMGWAA-----HFG----SLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWL  240 (314)
T ss_pred             HHHHHHHHHHHHH-----HhC----CCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHH
Confidence            7766666677654     234    3344455556667889999999999999999999999999999999998764

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.96  E-value=8.1e-28  Score=226.43  Aligned_cols=202  Identities=17%  Similarity=0.148  Sum_probs=156.0

Q ss_pred             HHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC--CCCCccc
Q 020367          106 HALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPLAS  183 (327)
Q Consensus       106 ~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk--~~RPlas  183 (327)
                      |+|++++||+++..+.++++.|.++|.+.. +.++.   ..++++++.+++++++|++|||+|+|.|++|+  |+||+++
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s   76 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT   76 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence            468999999999999999999999986542 22332   25667889999999999999999999999865  7999999


Q ss_pred             cccChHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH-HhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHH
Q 020367          184 GEISMGTGIAITLASALMSLAYA-VMIRSPPFIWAVIAWIF-VGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY  261 (327)
Q Consensus       184 G~ls~~~a~~~~~~~~~l~l~la-~~lg~~~~~~~ll~~~~-l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~  261 (327)
                      |++|++++..++.++.++|+.+. +.+++....+. +++.+ ..+.||.     .+||++..+.+..++..+.++..|++
T Consensus        77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~-~~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~~  150 (280)
T TIGR01473        77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLG-LFGIFFYVIVYTI-----WLKRRTPQNTVIGGFAGAVPPLIGWA  150 (280)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhhcCh-----hhccCCchhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998844 45776544433 34444 4789995     48999887666665544455556654


Q ss_pred             HhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       262 ~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      .     ..|    .++...+++.....+|+........++|+|+|+++|+||+|+++|+|++.++
T Consensus       151 a-----~~g----~~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~  206 (280)
T TIGR01473       151 A-----VTG----SISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQ  206 (280)
T ss_pred             H-----hcC----CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHH
Confidence            3     123    3455555566677888877766777899999999999999999999988653

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.96  E-value=8.9e-28  Score=226.36  Aligned_cols=201  Identities=19%  Similarity=0.161  Sum_probs=156.6

Q ss_pred             HHHHHHHchhhhHHH---HHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC--CCCC
Q 020367          106 HALYRFMRAYACAGV---IIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLP  180 (327)
Q Consensus       106 ~~~~~l~Rp~~~~~~---~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk--~~RP  180 (327)
                      ++|.+++|++++..+   .++.+.|.++|.+.....++.   ..++.+++..++++++|++|||+|+|.|+.++  ++||
T Consensus         2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~---~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP   78 (281)
T TIGR01474         2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLY---LLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRP   78 (281)
T ss_pred             hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHH---HHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCC
Confidence            567888877776555   444566777775421111122   13556677889999999999999999998754  5899


Q ss_pred             ccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHH
Q 020367          181 LASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPV  260 (327)
Q Consensus       181 lasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~  260 (327)
                      +++|+++++++..++.++.++++.+++.+|+..+... ++++++.+.|+.      .||+..++++..++..+..+..|+
T Consensus        79 l~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~  151 (281)
T TIGR01474        79 LASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG-VASLALVATYPF------MKRITYWPQLVLGLAFGWGALMGW  151 (281)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhch------hcccccccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998887655444 567777999994      899998999999888887777776


Q ss_pred             HHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeeccccccc
Q 020367          261 YVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSK  325 (327)
Q Consensus       261 ~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~  325 (327)
                      +.     +.|    .++...+++.+...+|+.+.+.+++++|+|+|+++|+||+|+++|+|++++
T Consensus       152 ~a-----~~g----~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~  207 (281)
T TIGR01474       152 AA-----VTG----DLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPW  207 (281)
T ss_pred             HH-----HcC----CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHH
Confidence            53     234    234444545566788999999999999999999999999999999988754

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=1.7e-27  Score=224.84  Aligned_cols=205  Identities=18%  Similarity=0.143  Sum_probs=159.7

Q ss_pred             hHHHHHHHHHHHchhhhHHHHHHHHH---HHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC-
Q 020367          101 FLKKFHALYRFMRAYACAGVIIATTS---NSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-  176 (327)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~---g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk-  176 (327)
                      .++++++|++++||+++.++.+.+.+   |.+++.+..++  +   ...++++++++++.+++|++||+.|+|+|+.|+ 
T Consensus         3 ~~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~--~---~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~R   77 (294)
T PRK12873          3 RSIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPS--L---LLLLLIILGGLAVSGAGCIANDLWDRRIDRKVER   77 (294)
T ss_pred             chHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCC--H---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Confidence            34578999999999999988777543   55555332222  2   225678899999999999999999999999865 


Q ss_pred             -CCCCccccccChHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHh
Q 020367          177 -PYLPLASGEISMGTGIAITLASALMSLAYAVMI----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSL  251 (327)
Q Consensus       177 -~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~l----g~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~  251 (327)
                       ++||+++|++++++++.++.++.++++.+.+.+    ++..+.+. +++++....|+.      +||+....++..++.
T Consensus        78 T~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~vlg~~  150 (294)
T PRK12873         78 TKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLA-FLALPPILIYPS------AKRWFAYPQAILALC  150 (294)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHH------HHhccccchHHHHHH
Confidence             599999999999999999999999999888766    43444433 344556789995      899988899999988


Q ss_pred             HHHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccc
Q 020367          252 NGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVS  324 (327)
Q Consensus       252 ~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~  324 (327)
                      .+.++.+||..     +.|..  .+....+++++..++|+.+.+++++++|+|+|+++|++|+|+++|++..+
T Consensus       151 ~a~~~l~gw~A-----v~g~~--~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~~  216 (294)
T PRK12873        151 WGFAVLIPWAA-----AEGSL--NGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNALK  216 (294)
T ss_pred             HHhHHHHHHHH-----HhCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhHH
Confidence            88877787653     34432  22223444456778999999999999999999999999999999986544

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.95  E-value=4.7e-27  Score=222.08  Aligned_cols=203  Identities=19%  Similarity=0.168  Sum_probs=158.6

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHH---HHHHHhccc-c-CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC
Q 020367          102 LKKFHALYRFMRAYACAGVIIAT---TSNSLLPVQ-T-LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK  176 (327)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~---~~g~llA~~-~-~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk  176 (327)
                      ++++++|+|++|.+......+..   ..|..++.. + .++  +.   ..++.+++.+++.+++|++||++|+|+|++|+
T Consensus         3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~--~~---~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~   77 (289)
T PLN02809          3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPD--LK---MLALFGCGALLLRGAGCTINDLLDRDIDKKVE   77 (289)
T ss_pred             chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCc--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCC
Confidence            35889999999999876665544   345555532 2 222  22   24567788899999999999999999999864


Q ss_pred             --CCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHH
Q 020367          177 --PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL  254 (327)
Q Consensus       177 --~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~  254 (327)
                        |+||+++|++|+++++.+..++.++++.+++.++...+... +++.++.+.|+.      +||+..++++..++..+.
T Consensus        78 RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~  150 (289)
T PLN02809         78 RTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILG-ASSLLLVFTYPL------MKRFTFWPQAFLGLTFNW  150 (289)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhH------HHhcCcchHHHHHHHHHH
Confidence              59999999999999999999999999999998887666544 456667889994      899999999998888777


Q ss_pred             HHHhHHHHhhHHHhhCCCCccCcHHHH-HHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeeccccccc
Q 020367          255 LTQFPVYVHIQKYVLGRPLEIFTRPLM-FATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSK  325 (327)
Q Consensus       255 ~~~lg~~~~~~~~v~g~~~~~~~~~~i-~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~  325 (327)
                      ++.+|+..     +.|.    .+...+ .+.....+|+.+.+++++++|+|+|+++|++|+|+++|++...+
T Consensus       151 ~~l~g~~a-----v~g~----~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~  213 (289)
T PLN02809        151 GALLGWAA-----VKGS----LDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLW  213 (289)
T ss_pred             HHHHHHHH-----HhCC----CChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHH
Confidence            77777643     3443    232333 25556678899999999999999999999999999999995544

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.95  E-value=6.7e-27  Score=222.25  Aligned_cols=208  Identities=15%  Similarity=0.116  Sum_probs=165.3

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccc--hhccCCCCC
Q 020367          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKPYL  179 (327)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e--~Dr~nk~~R  179 (327)
                      .++++.|++.+||+++..++.+++.|.++|.....++++.   .+++++++..+.+.++|.+|||+|.+  .|+. ++. 
T Consensus         9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~-   83 (304)
T PRK07419          9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLD---QFITFLLAAILILAWENLSNDVFDADTGIDKN-KFH-   83 (304)
T ss_pred             ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-
Confidence            4678899999999999999999999999987654566653   36778899999999999999999986  6773 222 


Q ss_pred             CccccccChHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHH
Q 020367          180 PLASGEISMGTGIAITLASALMSLAYA----VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL  255 (327)
Q Consensus       180 PlasG~ls~~~a~~~~~~~~~l~l~la----~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~  255 (327)
                      ...++..++++....+.+++++++.++    +..| |+++...+++++.+++||.  ||+++|++++ |++.+++.+|..
T Consensus        84 ~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g-~~~l~ig~~g~~~~~~YT~--gP~~l~y~gL-GE~~v~l~~G~l  159 (304)
T PRK07419         84 SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSD-WTVLGLVLLCCFLGYLYQG--PPFRLGYQGL-GEPLCFLAFGPL  159 (304)
T ss_pred             CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHhheccC--CCcccCCCCc-hHHHHHHHHHHH
Confidence            233455578888888777776666544    3345 4555556678899999996  8999999995 999999999976


Q ss_pred             HHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       256 ~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      +..|.+..     ..+   .++...+...+.+++++..+.+.||++|+|+|+++|+||+|+++|+|+++++
T Consensus       160 ~v~g~~yv-----~t~---~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l  222 (304)
T PRK07419        160 AVAAALYS-----QTP---SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQL  222 (304)
T ss_pred             HHHHHHHH-----hcC---CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHH
Confidence            66666542     222   4566667777788888899999999999999999999999999999999764

>PRK08238 hypothetical protein; Validated

Probab=99.95  E-value=3.2e-27  Score=236.89  Aligned_cols=225  Identities=18%  Similarity=0.239  Sum_probs=174.6

Q ss_pred             hhccccc-cCcCeeecCCCcccccCcCCCCCCcccchhhhHhhHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCC
Q 020367           60 NKIASSR-NCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADL  138 (327)
Q Consensus        60 ~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~  138 (327)
                      ..++-|+ ++++++||++++.+..     .+....+...++..+.++++|++++|||||++|++.++ +.+++ +.+.+ 
T Consensus       150 ~Dlp~~~~A~~av~Vn~~~~l~~~-----a~~~~~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a-~~~~~-  221 (479)
T PRK08238        150 ADLPVWAAARRAIVVGASPGVARA-----ARALGPVERVFPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAA-HQFGD-  221 (479)
T ss_pred             HHHHHHHhCCCeEEECCCHHHHHH-----HHHcCCcceecCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHh-cccCC-
Confidence            3344799 9999999997765333     11123467778888899999999999999999999876 44444 54433 


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccC--CCCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 020367          139 TPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIW  216 (327)
Q Consensus       139 ~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~n--k~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~  216 (327)
                       +..+...++++++++++.+++|++||++|+|+||.|  ||+||++||++|+++++.++.+++++|+++++.+++ .+.+
T Consensus       222 -~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~-~~~~  299 (479)
T PRK08238        222 -LQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGP-AFLL  299 (479)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhH-HHHH
Confidence             333445778899999999999999999999999997  789999999999999999999999999999999886 5545


Q ss_pred             HHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHH
Q 020367          217 AVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAF  296 (327)
Q Consensus       217 ~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~  296 (327)
                      .++.+++++++||.     ++||+++++++++++..+..+..|+..      .+.     +.+.+++ ++..++.....+
T Consensus       300 ~~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~~G~~a------~~~-----~~s~wll-~~~~~~~l~la~  362 (479)
T PRK08238        300 VLLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRIIAGAAA------IGV-----ALSFWLL-AFSMFFFLSLAL  362 (479)
T ss_pred             HHHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHHHHHHH------hcc-----CHHHHHH-HHHHHHHHHHHH
Confidence            56678889999997     799999999999998887666666442      121     2222322 223344566788


Q ss_pred             HHhcCChHHHHHcCC
Q 020367          297 IKDLHDVDGDKKFGI  311 (327)
Q Consensus       297 ~~di~DiegD~~~G~  311 (327)
                      .|...|+++++..|.
T Consensus       363 ~KR~~El~~~~~~~~  377 (479)
T PRK08238        363 VKRYTELRRALQRGK  377 (479)
T ss_pred             HHhHHHHHHHHhcCC
Confidence            999999999988885

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=7.3e-27  Score=220.72  Aligned_cols=206  Identities=13%  Similarity=0.160  Sum_probs=161.5

Q ss_pred             HHHHHHHHHHchhhhHHHHHHHHHHHHhcc------ccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC
Q 020367          103 KKFHALYRFMRAYACAGVIIATTSNSLLPV------QTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK  176 (327)
Q Consensus       103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~------~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk  176 (327)
                      ++++.|.++.|.++.+..+-....|.++|.      ++.-+. |. +..+++..++.+++.+++|++||+.|+|+|++|+
T Consensus         2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~   79 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSL-GG-IKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNP   79 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCC-CC-HHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCC
Confidence            368899999999999888777788888885      220001 11 2235677889999999999999999999999998


Q ss_pred             --CCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHH
Q 020367          177 --PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL  254 (327)
Q Consensus       177 --~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~  254 (327)
                        ++||+++|++|+++++.++..+.++++++++.+|+.++.+.. +++++.+.||.      +||+..++++..++..+.
T Consensus        80 RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLGl~~~~  152 (300)
T PRK12876         80 RTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILGLVYYL  152 (300)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHHHHHHH
Confidence              599999999999999999988888888888889976665554 45556689994      999999999988888776


Q ss_pred             HHHhHHHHhhHHHhhCCCCccCcH----HHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeeccccccc
Q 020367          255 LTQFPVYVHIQKYVLGRPLEIFTR----PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSK  325 (327)
Q Consensus       255 ~~~lg~~~~~~~~v~g~~~~~~~~----~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~  325 (327)
                      .+..|+..     +.+++   .+.    ..++..+..++|+.+.+++++++|+|+|++.|+||+|+++|++++.+
T Consensus       153 ~~l~~~~A-----v~~~~---~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~  219 (300)
T PRK12876        153 AILMNFFA-----IIETP---LSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIR  219 (300)
T ss_pred             HHHHHHHH-----HhcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHH
Confidence            66666553     33431   122    12333445577788999999999999999999999999999998743

>PLN02922 prenyltransferase

Probab=99.95  E-value=1e-26  Score=222.02  Aligned_cols=216  Identities=19%  Similarity=0.226  Sum_probs=163.1

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccc--hhccCCCCC
Q 020367          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKPYL  179 (327)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e--~Dr~nk~~R  179 (327)
                      .++++.|+++.||+++..++.+++.|.++|......+++.   ..++++++.++.+.++|.+|||+|.+  .|+.++..+
T Consensus        12 ~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~   88 (315)
T PLN02922         12 LSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDAR---RYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESV   88 (315)
T ss_pred             ccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCC
Confidence            3578899999999999999999999999987654456654   36778899999999999999999975  576433221


Q ss_pred             CccccccChHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHH
Q 020367          180 PLASGEISMGTGIAITLASALMSLAYAVMI----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL  255 (327)
Q Consensus       180 PlasG~ls~~~a~~~~~~~~~l~l~la~~l----g~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~  255 (327)
                      .-..|  ++++....+..++++++...+.+    +.|.+++..+++++.+++||.  ||+++|++++ |++.+++.+|..
T Consensus        89 ~~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~--gP~pl~y~gL-GE~~v~i~fG~l  163 (315)
T PLN02922         89 VNLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQC--PPFRLSYKGL-GEPLCFAAFGPL  163 (315)
T ss_pred             CCccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhc--CCcccccCcc-hHHHHHHHHHHH
Confidence            12233  89999888777776666433222    225565666788999999996  8999999995 898889999976


Q ss_pred             HHhHHHHhhHHHhhCCC-Cc--cCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          256 TQFPVYVHIQKYVLGRP-LE--IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       256 ~~lg~~~~~~~~v~g~~-~~--~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      ++.|.|.. ++...+.. ..  .++...++..++..+++..++++||+||+|+|+++|+||+|+++|+|+++++
T Consensus       164 ~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l  236 (315)
T PLN02922        164 ATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRV  236 (315)
T ss_pred             HHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHH
Confidence            66776643 22111110 00  1344556677888899999999999999999999999999999999998764

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=1.3e-26  Score=218.02  Aligned_cols=203  Identities=19%  Similarity=0.177  Sum_probs=144.0

Q ss_pred             HHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCCCCcccc
Q 020367          105 FHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASG  184 (327)
Q Consensus       105 l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG  184 (327)
                      +|.+++++||.+|+.+.+++..|+++|.+ .++  +..   .+.++......+.+.|.+|||+|.|.|..|++++.. .|
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~~-~~~--~~~---l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g   73 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLAGG-EID--WLF---VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EG   73 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHHCC-CCC--hHH---HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CC
Confidence            36789999999999999999999999833 232  321   122222234455555778999999999999765443 48


Q ss_pred             ccChHHHHHHHHHHHH-----HHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhH
Q 020367          185 EISMGTGIAITLASAL-----MSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP  259 (327)
Q Consensus       185 ~ls~~~a~~~~~~~~~-----l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg  259 (327)
                      .+++++.......+.+     .++.+.+..+ +.++....++++.++.||.  ||.|+|++++.|+++.+........+|
T Consensus        74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-~~~~~l~~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~G  150 (282)
T PRK13105         74 AVLDRAMHRTTLWASVVTTVPFLVVLLAVGS-WASGLVLAVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALYG  150 (282)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHHH
Confidence            8999887444333332     2223333324 4454555678889999996  899999999988876655443334454


Q ss_pred             HHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       260 ~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      .+.     + +.   .++...++....+.+|+.+++++||+||+|+||+.|+||+|+++|+|++.++
T Consensus       151 ~~~-----~-~~---~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~  208 (282)
T PRK13105        151 LVL-----A-GA---PFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRL  208 (282)
T ss_pred             HHH-----h-hc---cccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHH
Confidence            432     2 32   3344556666777889999999999999999999999999999999998764

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.95  E-value=1.8e-26  Score=217.68  Aligned_cols=199  Identities=18%  Similarity=0.125  Sum_probs=159.3

Q ss_pred             chhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccc--hhcc--CCCCCCccccccCh
Q 020367          113 RAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKV--NKPYLPLASGEISM  188 (327)
Q Consensus       113 Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e--~Dr~--nk~~RPlasG~ls~  188 (327)
                      ||+++..++.+++.|.++|..+. .+++.   ..++++++.++++.++|.+|||+|.+  .|+.  .+|.|++++|.+++
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~---~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~   76 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLH-AFVWL---VALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP   76 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcC-CccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence            89999999999999999987653 56553   36778899999999999999999984  3543  35789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH----hhH-----HHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhH
Q 020367          189 GTGIAITLASALMSLAYAVM----IRS-----PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP  259 (327)
Q Consensus       189 ~~a~~~~~~~~~l~l~la~~----lg~-----~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg  259 (327)
                      +++..++.+++++++.++..    .++     +++++..+++++.+++||.  ||+++|+++ +|++.+++.+|...++|
T Consensus        77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~--gP~~l~y~g-LGE~~v~i~~G~l~v~g  153 (284)
T TIGR00751        77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTV--GSKPYGYAG-LGDISVLVFFGPLAVLG  153 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcC--CCCccccCc-hHHHHHHHHHHHHHHHH
Confidence            99999888887766655443    342     2444455678888999996  899999999 59999999999766676


Q ss_pred             HHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       260 ~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      .+..     ..+   .++...++..+...+++..+++.||++|+|+|+++|+||+|+++|+|+++++
T Consensus       154 ~~yv-----q~~---~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l  212 (284)
T TIGR00751       154 TQYL-----QAH---RVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMY  212 (284)
T ss_pred             HHHH-----hcC---CCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHH
Confidence            5542     222   4565566666777888889999999999999999999999999999999764

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.94  E-value=1.5e-25  Score=212.59  Aligned_cols=203  Identities=16%  Similarity=0.188  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccC-------
Q 020367          103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN-------  175 (327)
Q Consensus       103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~n-------  175 (327)
                      +++++|++++||++++....+++.|.++|......+++..   .+++++...++..++|++|||+|+|.|+.|       
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r   79 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR   79 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence            4689999999999888777777788888732111233322   232344445555677999999999999864       


Q ss_pred             --C--CCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHhhhccCCCCccccccc----cchh
Q 020367          176 --K--PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSP---PFIWAVIAWIFVGTAYSVQLPLLRWKGN----SFLA  244 (327)
Q Consensus       176 --k--~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~---~~~~~ll~~~~l~~~YS~~lpp~rlKr~----~~l~  244 (327)
                        |  ++||+++|++|+++++.++.++.++|+.++..++..   ..+...+.+.++++.|+.       |++    | .+
T Consensus        80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~-------~kr~~~~p-~~  151 (297)
T PRK12871         80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQV-------KKRNQKYP-VA  151 (297)
T ss_pred             cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cccccccc-HH
Confidence              3  489999999999999999999999888887765532   222222445567778884       333    4 22


Q ss_pred             hHHHHHhHHHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccc
Q 020367          245 AFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVS  324 (327)
Q Consensus       245 ~l~~~~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~  324 (327)
                      .+..+...+.++..| +.     ..|    ..+...++..++.++|+.+++.++|++|+|+|++.|+||+|+++|+++++
T Consensus       152 ~l~G~~~~~~~~~~g-~~-----~~g----~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~  221 (297)
T PRK12871        152 QLLGRTDFTLFPAAG-YL-----CYG----QPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTM  221 (297)
T ss_pred             HHHHHHHHHHHHHHH-HH-----HhC----CCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHH
Confidence            222323333334444 22     234    23444555567778899999999999999999999999999999999887


Q ss_pred             cc
Q 020367          325 KL  326 (327)
Q Consensus       325 ~l  326 (327)
                      ++
T Consensus       222 ~~  223 (297)
T PRK12871        222 YW  223 (297)
T ss_pred             HH
Confidence            54

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.94  E-value=2.1e-25  Score=210.48  Aligned_cols=202  Identities=14%  Similarity=0.103  Sum_probs=156.0

Q ss_pred             HHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccch--hccCCCCCCccccc
Q 020367          108 LYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEV--DKVNKPYLPLASGE  185 (327)
Q Consensus       108 ~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~--Dr~nk~~RPlasG~  185 (327)
                      |++.+||+++..++.+++.|.++|.....++++..   .++++++..+.+.++|.+|||+|.+.  |+.+.  ....++.
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~~~~   76 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL--HSIVNLT   76 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCccccc
Confidence            78899999999999999999999976544566543   56788899999999999999999764  76422  1122233


Q ss_pred             cChHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHH
Q 020367          186 ISMGTGIAITLASALMSLAYA----VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY  261 (327)
Q Consensus       186 ls~~~a~~~~~~~~~l~l~la----~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~  261 (327)
                      .++++....+.+++++++.++    +..+ |+++...+++++.+++||.  ||+++|++++ |++.+++.+|..++.|.+
T Consensus        77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~-~~~l~lg~~g~~~~~~Yt~--gP~~l~y~gL-GE~~v~l~~G~l~v~g~~  152 (285)
T TIGR02235        77 GSRSLVFWLANFFLLIGLVGIAALSWRWQ-ITVLALVGLCCFLGYLYQG--PPFRLGYQGL-GEPICWLCFGPLAIAAAL  152 (285)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhcC--CCcccCCCCc-cHHHHHHHHHHHHHHHHH
Confidence            456777776666665555444    4445 4555556678899999996  8999999995 999999999976666655


Q ss_pred             HhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       262 ~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      ..     ..+   .+++..++..+.+++.+..+.+.||+||+|+|+++|+||+|+++|+|++.++
T Consensus       153 yv-----qt~---~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l  209 (285)
T TIGR02235       153 YA-----QSQ---SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKI  209 (285)
T ss_pred             HH-----hCC---cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHH
Confidence            42     222   4566667777788888999999999999999999999999999999998764

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.94  E-value=2.3e-25  Score=209.78  Aligned_cols=203  Identities=18%  Similarity=0.222  Sum_probs=133.9

Q ss_pred             hHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCC-CChHHHHHHHHHHHHH--HHHHHHHHHhhhccccchhccCCC
Q 020367          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLAD-LTPAYFTGLMEALVPA--VLMHIYVVAINQLSDVEVDKVNKP  177 (327)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~-~~~~~l~~~lla~la~--~l~~~a~~~~Nd~~D~e~Dr~nk~  177 (327)
                      .+.+++.|+++.||++|..++.+++.|.++|.+...+ +++.     ++++++.  +..+..+|++||++|+|+||.|++
T Consensus         4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~-----~~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~pr   78 (282)
T PRK12875          4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPA-----AVALFAYFLFPANVFLYGVNDVFDADTDELNPK   78 (282)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHH-----HHHHHHHHHHHHHHHHhcchhhhhhhccccCCC
Confidence            4568899999999999999999999999999765332 2331     1112221  234456788999999999999876


Q ss_pred             CCCccccccChHHHH---H-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHH
Q 020367          178 YLPLASGEISMGTGI---A-ITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG  253 (327)
Q Consensus       178 ~RPlasG~ls~~~a~---~-~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g  253 (327)
                      ++.   |+...++..   . ......++++.+.+..++... ..++.+++++++||.  ||+|+|++++.+..+.+.. .
T Consensus        79 k~~---~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~-~~ll~~i~~~~~YS~--pP~rlk~~p~~~~~~~g~~-~  151 (282)
T PRK12875         79 KDR---EREVRYRGDRRVLVAVALSGALALAFLLVLPPAAW-PALLAFLVLSVEYSA--PPLRFKTTPVLDSLSNGLY-I  151 (282)
T ss_pred             ccC---CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHcC--CCccchhccHHHHHHHHHH-H
Confidence            653   221112221   1 122233344444444443222 233567888999996  8999999998776554432 2


Q ss_pred             HHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       254 ~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      .++..+++.+     .|    .++...++  +..++|+.+.+++||++|+|+|+++|+||+|+++|+|+++++
T Consensus       152 ~~~~~~y~~~-----tg----~~~~~~l~--~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~  213 (282)
T PRK12875        152 LPGVAAYALV-----SG----SLPPLLAV--AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAY  213 (282)
T ss_pred             HHHHHHHHHH-----cC----CCcHHHHH--HHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHH
Confidence            3333443321     22    33433332  234688899999999999999999999999999999998753

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.93  E-value=1.3e-25  Score=211.58  Aligned_cols=205  Identities=24%  Similarity=0.275  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCCCCcc
Q 020367          103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLA  182 (327)
Q Consensus       103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPla  182 (327)
                      +.+++++++.|+.+.+........+..  .....+. +.    ....+++.++.+.++|.+||++|+|+|+.|+|+||.+
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~-~~----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~   74 (285)
T PRK12872          2 KLLFAFLKLFRYGNLLIAALGQSLVYM--ASLLLGL-PI----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF   74 (285)
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHH--HHHHHcC-hh----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence            457899999999988777666554321  1111111 11    2345677888999999999999999999999999988


Q ss_pred             ccccChHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHhhhccCCCCcc-ccccccchhhHHHHHhHHHH-HHhH
Q 020367          183 SGEISMGTGIAITLASALMSLAYAV-MIRSPPFIWAVIAWIFVGTAYSVQLPLL-RWKGNSFLAAFCMVSLNGLL-TQFP  259 (327)
Q Consensus       183 sG~ls~~~a~~~~~~~~~l~l~la~-~lg~~~~~~~ll~~~~l~~~YS~~lpp~-rlKr~~~l~~l~~~~~~g~~-~~lg  259 (327)
                      +++.....+..+..+...+++.+.. ..+++.+ +..+++.++++.||.  ||. ++||.|.+++++++..||.. +..+
T Consensus        75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~  151 (285)
T PRK12872         75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFA-LIFIIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG  151 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence            5544444443334444444444332 2365444 444567778999996  444 68999999999999999854 3334


Q ss_pred             HHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       260 ~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      ++.      .+.   .++...+...++++++.+.++.++|++|+|+|+++|++|+|+++|+|+++++
T Consensus       152 ~~~------~~~---~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~  209 (285)
T PRK12872        152 VYY------YQL---TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKF  209 (285)
T ss_pred             HHh------ccc---ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHH
Confidence            332      121   2344455555666777888999999999999999999999999999999875

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.93  E-value=9.1e-25  Score=204.61  Aligned_cols=208  Identities=17%  Similarity=0.153  Sum_probs=162.9

Q ss_pred             HHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccc--hhcc----CC
Q 020367          103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKV----NK  176 (327)
Q Consensus       103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e--~Dr~----nk  176 (327)
                      ++.+.|+++.|||++...+.+++.|.++|......+++   +..+++++++.+++..+|..|||.|.+  .|..    .+
T Consensus         6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~---~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~   82 (303)
T COG1575           6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL---LVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK   82 (303)
T ss_pred             HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence            35589999999999999999999999999876544544   347889999999999999999999974  5542    33


Q ss_pred             CCCCccccccChHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhH
Q 020367          177 PYLPLASGEISMGTGIAITLASALMSLAYA----VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN  252 (327)
Q Consensus       177 ~~RPlasG~ls~~~a~~~~~~~~~l~l~la----~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~  252 (327)
                      ..+-+...+++++..+.+.+.++..+.+++    ...++ .+++..+++++++++|+.  +|+++++.| +|++..++.+
T Consensus        83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~-~~l~lG~l~~~~g~~YTg--Gp~PlgY~g-LGEi~~~vff  158 (303)
T COG1575          83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDW-LVLLLGLLCIAAGILYTG--GPFPLGYMG-LGEIFVGVFF  158 (303)
T ss_pred             ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHheeeecc--CCcCcccCC-HHHHHHHHHH
Confidence            345556667777777777766665554444    33454 466667789999999997  899999999 5999999999


Q ss_pred             HHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeeccccccc
Q 020367          253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSK  325 (327)
Q Consensus       253 g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~  325 (327)
                      |....+|.|+. |+   +    .+++..++..++..+.+..++..||++|+|.|+++|++|+|+++|+++++.
T Consensus       159 G~l~v~g~~yi-qt---~----~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~  223 (303)
T COG1575         159 GPLIVLGAYYI-QT---G----RLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARK  223 (303)
T ss_pred             HHHHHHHHHHH-hc---c----cchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHH
Confidence            97555554432 21   1    456566677778888888999999999999999999999999999999875

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.93  E-value=1.6e-25  Score=206.05  Aligned_cols=167  Identities=28%  Similarity=0.472  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccchhcc--CCCCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 020367          146 LMEALVPAVLMHIYVVAINQLSDVEVDKV--NKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIF  223 (327)
Q Consensus       146 ~lla~la~~l~~~a~~~~Nd~~D~e~Dr~--nk~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~  223 (327)
                      ....+++.++.+.++|.+||+.|+|+|+.  |||+||+++|+++++++...+.++.++++.+++..+++.+.+ .+++.+
T Consensus        25 ~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~~~~~~~~~~-~~~~~~  103 (257)
T PF01040_consen   25 FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLALLLGPWFLLI-LLLGFL  103 (257)
T ss_pred             HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHHhcCchhHHH-HHHHHH
Confidence            45566677799999999999999999999  899999999999999999999999999999998888655544 456677


Q ss_pred             HhhhccCCCCccccccccchhhHHHHHhHHHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 020367          224 VGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDV  303 (327)
Q Consensus       224 l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~Di  303 (327)
                      ++++||   ||+|+||++++++++.++.++..+.+|++.      .++   ..+.+.+....+..++.......+|++|+
T Consensus       104 ~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~  171 (257)
T PF01040_consen  104 LGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGG---DPPPPPFLLAIFFFLLIFAIMFFNDIRDI  171 (257)
T ss_pred             HHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCC---cccHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            789999   678999999999999999888766666553      222   22334444455556777778888899999


Q ss_pred             HHHHHcCCcccceeeccccccc
Q 020367          304 DGDKKFGIKTLSVMLGKERVSK  325 (327)
Q Consensus       304 egD~~~G~~Tlpv~lG~~~a~~  325 (327)
                      |+|++.|+||+|+++|++++++
T Consensus       172 ~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  172 EGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHcCCcchHHHHHHHHHHH
Confidence            9999999999999999999864

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.92  E-value=7.1e-24  Score=200.61  Aligned_cols=151  Identities=21%  Similarity=0.284  Sum_probs=122.5

Q ss_pred             hHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccC--CCC
Q 020367          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPY  178 (327)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~n--k~~  178 (327)
                      .++++++|++++||++|++|++.+.++ +++.. ..+  +..+...++++++++++++++|++||++|+|+||.|  ||+
T Consensus         7 ~~~~l~~~l~L~RP~~w~~nll~~~~~-~~a~~-~~~--~~~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~   82 (295)
T PRK12324          7 PKNLLAGYLKLLRPKQWIKNLFVFAAP-IFAGN-LLN--PGALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN   82 (295)
T ss_pred             hHHHHHHHHHHhCchHHHHHHHHHHHH-HHHHh-hcc--cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence            346889999999999999999977654 44432 222  112334677888889999999999999999999995  889


Q ss_pred             CCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHHh
Q 020367          179 LPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF  258 (327)
Q Consensus       179 RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~l  258 (327)
                      ||+++|++++++++.++.+++++|+++++.+++..+ +..+.++++.++||.     ++|+++++++++++..++..+..
T Consensus        83 RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~-~~~~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~~~  156 (295)
T PRK12324         83 RPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLA-LVLLVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRAIA  156 (295)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998886444 334678888899997     79999999999998877765555


Q ss_pred             HHH
Q 020367          259 PVY  261 (327)
Q Consensus       259 g~~  261 (327)
                      |..
T Consensus       157 G~~  159 (295)
T PRK12324        157 GGV  159 (295)
T ss_pred             HHH
Confidence            543

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.91  E-value=1.9e-23  Score=195.92  Aligned_cols=209  Identities=11%  Similarity=0.110  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHchhh---hHHHHHHHHHHHHhc--cccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCC
Q 020367          103 KKFHALYRFMRAYA---CAGVIIATTSNSLLP--VQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP  177 (327)
Q Consensus       103 ~~l~~~~~l~Rp~~---~~~~~l~~~~g~llA--~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk~  177 (327)
                      ++++-|.|-+=|-.   .+...+. +..+.+.  .++..++.+  ..+.+++++..++..+++|++|||+|+|+||+|+|
T Consensus         3 k~~~iy~~e~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P   79 (299)
T PRK13592          3 KRLNVYLKEMYPLLPRLILSLTLF-FEIYMITLLSNHISSFRI--GIQEFVGVFTVFGFWMILRIADDFKDYETDRRLFP   79 (299)
T ss_pred             hhHHHHHHHhccchhhhHHHHHHH-HHHHHHhhhccCCCCCCC--chHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCC
Confidence            35667777765543   2222222 2222221  122234333  23567777788888999999999999999999999


Q ss_pred             CCCccccccChHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHH
Q 020367          178 YLPLASGEISMGTGIAITLASALMSLAYAVMI--RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL  255 (327)
Q Consensus       178 ~RPlasG~ls~~~a~~~~~~~~~l~l~la~~l--g~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~  255 (327)
                      +||+|||++|++++..++..+.++++.++...  +...++ .+.++.++++  +.     ++|+.++.+|+.++...|.+
T Consensus        80 ~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~~i~i~~~~-i~~lY~~lm~--a~-----~~K~~~l~gNl~Va~ltg~~  151 (299)
T PRK13592         80 HRALPSGRVKKKDLAIALSFIVAVSVLLNVLFMNNVGWFL-FLYIYGTLMS--FW-----FFKRDKIQNSLPLALVTHNP  151 (299)
T ss_pred             CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HH-----HHcccCCCcchhhhhhccch
Confidence            99999999999999999999988887776555  211111 1122222222  65     69999999999999988865


Q ss_pred             HHhH--HHHhh-HHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          256 TQFP--VYVHI-QKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       256 ~~lg--~~~~~-~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      +..|  ++... .....|.+.  .....+++.+..++...++|+.+|++| |||++ |.+|+|+++|.|+|.++
T Consensus       152 f~~g~~~~~~~fg~~~~g~~~--~~~~~~~l~l~afl~~l~rEI~KdieD-~gd~~-~~~Tlpi~~G~kkA~~i  221 (299)
T PRK13592        152 VMMILNLYTISFVCYKYNLPL--LSLPTVLLAFTMYFPSLIWEVCRKIRA-PKDET-EYVTYSKLFGYKKATRF  221 (299)
T ss_pred             hhhchhhhhhhhhhhhcccch--hhHHHHHHHHHHHHHHHHHHHHHhhcC-Ccccc-CCeeechhccchhHHHH
Confidence            5333  22110 011123211  111112333344555689999999999 88886 59999999999998754

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.90  E-value=1.1e-22  Score=192.24  Aligned_cols=159  Identities=23%  Similarity=0.234  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHhhhccccchhccCCCCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccC
Q 020367          151 VPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSV  230 (327)
Q Consensus       151 la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~  230 (327)
                      +++.+...++|++|||+|+|+|++|+|+||.+    +++.+..++.+..++|+++++..|+ .+ + .+++.+.+++||.
T Consensus        65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~-~l-l-~ll~~l~g~lYS~  137 (307)
T PRK13591         65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGM-LL-L-AFLPFITGYLYSK  137 (307)
T ss_pred             HHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhH-HH-H-HHHHHHHHHHhcC
Confidence            45567789999999999999999999999986    7888999999999999999999885 33 2 3467778999996


Q ss_pred             CC--Cc--cccccccchhhHHHHHhHHHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Q 020367          231 QL--PL--LRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGD  306 (327)
Q Consensus       231 ~l--pp--~rlKr~~~l~~l~~~~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD  306 (327)
                      ++  +|  +++|+++.+|++.+++.||.....+ .  +.  ..+    .+ ........+.....++++.+||++|+|||
T Consensus       138 Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~-~--g~--~~~----~~-~~~~~i~l~~~~~l~~~~iindirDiEGD  207 (307)
T PRK13591        138 GIKIGKFALKLKGGLGVKNIVVGITWGGFIAGI-A--GS--YCG----SL-IPVGLIFLFFGVKLFINSCVYDFKDVKGD  207 (307)
T ss_pred             CCCCCCccccccCCCchhHHHHHHHHHHHHHHH-H--Hh--hhh----hH-HHHHHHHHHHHHHHHHHHHHHHhhhhHhH
Confidence            42  24  4889999999999999998633221 0  00  001    11 01111112222233667789999999999


Q ss_pred             HHcCCcccceeecccccccc
Q 020367          307 KKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       307 ~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      ++.|++|+|+++|+++|+++
T Consensus       208 r~~G~kTLPV~lG~~~A~~l  227 (307)
T PRK13591        208 TLAGIKTLPVSLGEQKTRNL  227 (307)
T ss_pred             HHcCCeeEEEEECHHHHHHH
Confidence            99999999999999999864

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=1.8e-22  Score=188.88  Aligned_cols=207  Identities=16%  Similarity=0.161  Sum_probs=162.1

Q ss_pred             hHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC--CC
Q 020367          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PY  178 (327)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk--~~  178 (327)
                      .+.++|+|+++++|..+..++++.+.|+++|...  ..++..   ++.+.++..++..+++.+|+++|+|+|++++  ++
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~l---~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~   88 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SINPLL---LLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK   88 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--cccHHH---HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence            4578999999999999999999999999999852  223432   5677889999999999999999999999965  58


Q ss_pred             CCccccccChHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHHHHHH
Q 020367          179 LPLASGEISMGTGIAITLASALMSLAYA-VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ  257 (327)
Q Consensus       179 RPlasG~ls~~~a~~~~~~~~~l~l~la-~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g~~~~  257 (327)
                      ||+++|++++++++.++.++.++|+.+. +..|+.+-.+.++..++..+.||.     .+||+.....+..++..+.|+.
T Consensus        89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~-----~lKR~T~~NiviGg~aGa~Ppl  163 (304)
T COG0109          89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL-----WLKRRTPQNIVIGGFAGAMPPL  163 (304)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hccCCcccceeeeecccccccc
Confidence            9999999999999999999999999987 667765444444555667789997     6899987655555555557888


Q ss_pred             hHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       258 lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      +||..     +.|.    .+...+++++++++|+-..-..-.+.-.|+.+++|+..+|++-|++.+++-
T Consensus       164 iGwaA-----vtg~----~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~  223 (304)
T COG0109         164 IGWAA-----VTGS----ISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQ  223 (304)
T ss_pred             ceeee-----eeCC----CCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHH
Confidence            88764     4453    344555566677777643333334555677799999999999999998764

>PLN02776 prenyltransferase

Probab=99.88  E-value=2.8e-21  Score=185.45  Aligned_cols=188  Identities=17%  Similarity=0.074  Sum_probs=145.9

Q ss_pred             HHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC--CCCCccccccCh
Q 020367          111 FMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPLASGEISM  188 (327)
Q Consensus       111 l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk--~~RPlasG~ls~  188 (327)
                      +++|.....++++.+.|+++|.+...+  +.   .+++.+++..++.+++|++||++|+|+|+.|+  ++||+++|++++
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~~--~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~   75 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAID--LP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV   75 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence            367888999999999999998654333  22   24567789999999999999999999999865  599999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHH-HHHHhHHHHhhHH
Q 020367          189 GTGIAITLASALMSLAY-AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG-LLTQFPVYVHIQK  266 (327)
Q Consensus       189 ~~a~~~~~~~~~l~l~l-a~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g-~~~~lg~~~~~~~  266 (327)
                      ++++.+++++.++|+.+ ++.+|+.++.+..+..++....||.      +||+..+. ..+|...| .++.+||..    
T Consensus        76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~~-~~lG~~~Ga~ppL~Gw~A----  144 (341)
T PLN02776         76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPAN-TWVGAVVGAIPPLMGWAA----  144 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCchh-HHHHHHHHHHHHHHHHHH----
Confidence            99999999999988854 5667866665443323334568994      89999765 57777766 677777664    


Q ss_pred             HhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeec
Q 020367          267 YVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLG  319 (327)
Q Consensus       267 ~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG  319 (327)
                       +.|    .++...+++++.+++|+........+.|.|+|+++|++++|+.-+
T Consensus       145 -vtg----~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~  192 (341)
T PLN02776        145 -ASG----QLDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADA  192 (341)
T ss_pred             -HcC----CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCcccc
Confidence             334    345566777778899998766666788888999999999999763

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.77  E-value=3.3e-19  Score=163.02  Aligned_cols=214  Identities=18%  Similarity=0.162  Sum_probs=155.5

Q ss_pred             hhhhHhhHHHHHHHHHHHchhhhHHHHHHHHH---HHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 020367           95 NSFLNVFLKKFHALYRFMRAYACAGVIIATTS---NSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEV  171 (327)
Q Consensus        95 ~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~---g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~  171 (327)
                      .+..+..+.+++.|.+++|....+++.+.+.+   ..++|... ... +. +.-+.+.-++.++|.+++|.+||++|.|.
T Consensus        54 ss~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda-g~~-p~-~~mL~LFG~GAllMRgAGCtINDlwDkdl  130 (353)
T KOG1381|consen   54 SSLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA-GLL-PS-IKMLALFGVGALLMRGAGCTINDLWDKDL  130 (353)
T ss_pred             hhhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCC-Ccc-ch-hHHHHHhcccHHHhccCCceehhhhhhhh
Confidence            34555566779999999999988888666533   34555532 111 21 22233344678999999999999999999


Q ss_pred             hcc--CCCCCCccccccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHH
Q 020367          172 DKV--NKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMV  249 (327)
Q Consensus       172 Dr~--nk~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~  249 (327)
                      |..  +.+.||+++|++++++++.+..+.+.+|+.+-..+|+... +....++.+.+.|+.      +||..+...+..+
T Consensus       131 D~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi-~lg~~sl~~v~~ypl------~kr~TY~pq~vLg  203 (353)
T KOG1381|consen  131 DAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSI-ALGASSLALVITYPL------MKRFTYWPQLVLG  203 (353)
T ss_pred             hhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHH-HhcccccccEEEeeh------hhhcchhHHHHHh
Confidence            987  3458999999999999999999999999999999997555 334556677788985      8998888877776


Q ss_pred             HhHHHHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeecccccccc
Q 020367          250 SLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVSKL  326 (327)
Q Consensus       250 ~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a~~l  326 (327)
                      +....-..+||-+     +-|.   ..+...+-+++--..|++..+.++..+|.++|.+.|+|+.+.++|++.-.|+
T Consensus       204 ltfnwGAllGw~A-----~~g~---~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl  272 (353)
T KOG1381|consen  204 LTFNWGALLGWCA-----LKGS---LSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWL  272 (353)
T ss_pred             hhcchhhhhcchh-----hcCc---cChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHH
Confidence            5443323455442     3343   2232223333334568889999999999999999999999999999876553

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.26  E-value=3.3e-12  Score=119.83  Aligned_cols=198  Identities=14%  Similarity=0.125  Sum_probs=139.1

Q ss_pred             hhHhhHHHHHHHHHHHchhhhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccchhccCC
Q 020367           97 FLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK  176 (327)
Q Consensus        97 ~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~e~Dr~nk  176 (327)
                      .-+..+.-++.|+++.+|.-....++....|+++|-..+ +++     .++...++..++.++.|.+||+++.+.|+.++
T Consensus        86 ly~lp~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~-s~~-----~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~  159 (409)
T KOG1380|consen   86 LYTLPGKYARCYLELSKPRLTMLVVLTTMTGYALAPGPF-SFP-----TLLYTTVGTGLCSASANAINQIFEPPFDSQMK  159 (409)
T ss_pred             hcCCCcchHHHHHHhcccceEEEEeeeccccccccccCC-Ccc-----hhHHHhhhhHHHHhhhHhhhhhccCCchhhhH
Confidence            344445678899999999998888888888998887653 222     35667789999999999999999999999866


Q ss_pred             C--CCCccccccChHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHhHH
Q 020367          177 P--YLPLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG  253 (327)
Q Consensus       177 ~--~RPlasG~ls~~~a~~~~~~~~~l~l~la~~-lg~~~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~~g  253 (327)
                      |  .||+++|++++.+++.++.+....|+.+.++ .|+....+...-.++.+..|+      .+||..++..-+.+++.+
T Consensus       160 RT~~Rplv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYT------PlKrihiinTWvGavVGA  233 (409)
T KOG1380|consen  160 RTQNRPLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYT------PLKRIHIINTWVGAVVGA  233 (409)
T ss_pred             hhcccccccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeecccc------chhhhhhhhhHHHHHhcc
Confidence            4  8999999999999999999998888876544 665333222222345577888      489987543333333334


Q ss_pred             HHHHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHH--HHHHHHhcCChHHHHHcCCccccee
Q 020367          254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCV--VIAFIKDLHDVDGDKKFGIKTLSVM  317 (327)
Q Consensus       254 ~~~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~--~~~~~~di~DiegD~~~G~~Tlpv~  317 (327)
                      +++.+||-..     .|.    .++..+++...+..|.+  ...+..+++  ++..++|.+.+++.
T Consensus       234 IPPLMGwAAa-----sg~----l~~ga~iLa~~LyaWQfPHFnaLS~~lR--~DYs~~GY~Mma~~  288 (409)
T KOG1380|consen  234 IPPLMGWAAA-----SGL----LDPGAMILAGILYAWQFPHFNALSWNLR--NDYSKAGYRMMAVT  288 (409)
T ss_pred             CCccchhhhh-----ccC----CCccHHHHHHHHHHhcccchhhhhhhhc--hhhhhccEEEEEee
Confidence            6778887642     232    23344555556667763  345555553  34578999988764

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.05  E-value=2.3e-11  Score=109.54  Aligned_cols=206  Identities=14%  Similarity=0.155  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHhcccc--CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccc--chhccCCC
Q 020367          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQT--LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDV--EVDKVNKP  177 (327)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~--~~~~~~~~l~~~lla~la~~l~~~a~~~~Nd~~D~--e~Dr~nk~  177 (327)
                      ..+.+.|+-.+||+..-.++.+...|..+|...  ..|+..   ....+..++.+..+.++|.+|.|+|.  .+|+....
T Consensus        58 ~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l---~~~fl~a~avlavh~agnlvntyfdf~kgid~kkad  134 (359)
T KOG4581|consen   58 FMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRL---ATFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKAD  134 (359)
T ss_pred             HHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhH---HHHHHHHhhheeeecccchhhhhhhhhhcccccccc
Confidence            467889999999999999988999999998642  234332   22344556667789999999999996  57887777


Q ss_pred             CCCccccccChHHHHHHHHHHHHHHHHHH---HHhhHH---HHHHHHHHHHHHhhhccCCCCccccccccchhhHHHHHh
Q 020367          178 YLPLASGEISMGTGIAITLASALMSLAYA---VMIRSP---PFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSL  251 (327)
Q Consensus       178 ~RPlasG~ls~~~a~~~~~~~~~l~l~la---~~lg~~---~~~~~ll~~~~l~~~YS~~lpp~rlKr~~~l~~l~~~~~  251 (327)
                      +|.++...+.+.+...++..+..+|..-+   +.+++.   -+.+..+.++--.+.|+.+   +.+|+..+ +.+.+.+.
T Consensus       135 drtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytgg---igfkyial-gdliili~  210 (359)
T KOG4581|consen  135 DRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGG---IGFKYIAL-GDLIILIL  210 (359)
T ss_pred             chhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecc---cceEEEec-cCEEEEEe
Confidence            89999999999998888887776555433   233331   1222223444456789964   46888874 66555555


Q ss_pred             HHHH-HHhHHHHhhHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHcCCcccceeeccccc
Q 020367          252 NGLL-TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERV  323 (327)
Q Consensus       252 ~g~~-~~lg~~~~~~~~v~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~di~DiegD~~~G~~Tlpv~lG~~~a  323 (327)
                      .|.+ +.+.+..  |+   |..  .|.+  +--.+++.+-+-++...|+-+|.|.||++|+-|+++.+|+..+
T Consensus       211 fgpiavlfaf~~--q~---g~l--~~~~--l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s  274 (359)
T KOG4581|consen  211 FGPIAVLFAFAI--QT---GHL--AIFP--LGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTAS  274 (359)
T ss_pred             echHHHHHHHHH--hc---Cce--eEEe--ehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHH
Confidence            5643 2222221  21   221  1211  1112334455566788999999999999999999999998754

>PRK13591 ubiA prenyltransferase; Provisional

Probab=93.74  E-value=0.25  Score=47.45  Aligned_cols=66  Identities=20%  Similarity=0.322  Sum_probs=36.0

Q ss_pred             HhhhccccchhccCC-CCCCccccccChHHHHHHHHHHHH---HHHHHHHHhhHH-----HHHHHHHHHHHHhhhccC
Q 020367          162 AINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLASAL---MSLAYAVMIRSP-----PFIWAVIAWIFVGTAYSV  230 (327)
Q Consensus       162 ~~Nd~~D~e~Dr~nk-~~RPlasG~ls~~~a~~~~~~~~~---l~l~la~~lg~~-----~~~~~ll~~~~l~~~YS~  230 (327)
                      .+||+.|.|.|+.++ +.-|..=|+   +.+..+...+.+   +.++++...|..     ..+..++.+++..+.|+.
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG~---~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLGE---QKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEECH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence            789999999999865 345654443   333333222222   222223333321     122345566777788996

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=91.65  E-value=0.62  Score=44.58  Aligned_cols=45  Identities=18%  Similarity=0.232  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHhhhccccchhccCCCCCCccccccChHHHHHH
Q 020367          148 EALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAI  194 (327)
Q Consensus       148 la~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~ls~~~a~~~  194 (327)
                      +..+...+..+.++..|++.|+|+|+.|+++.+..  ++..+.+..+
T Consensus       180 l~slp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l  224 (303)
T COG1575         180 LPSLPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKL  224 (303)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHH
Confidence            33455566777888999999999999988765432  3444444443

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=91.14  E-value=1.2  Score=43.00  Aligned_cols=49  Identities=18%  Similarity=0.220  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHhhhccccchhccCCC-CCCccccccChHHHHHHHHHHHH
Q 020367          149 ALVPAVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLASAL  200 (327)
Q Consensus       149 a~la~~l~~~a~~~~Nd~~D~e~Dr~nk~-~RPlasG~ls~~~a~~~~~~~~~  200 (327)
                      ..+...+........||+-|+|.||.+.+ .-|.   ++.++.+..+...+.+
T Consensus       194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~~  243 (317)
T PRK13387        194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILFY  243 (317)
T ss_pred             HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHHH
Confidence            44566677788899999999999998654 3333   3445555554444333

>PLN00012 chlorophyll synthetase; Provisional

Probab=90.88  E-value=1.4  Score=43.47  Aligned_cols=34  Identities=21%  Similarity=0.311  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHhhhccccchhcc-CCCCCCccccc
Q 020367          152 PAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE  185 (327)
Q Consensus       152 a~~l~~~a~~~~Nd~~D~e~Dr~-nk~~RPlasG~  185 (327)
                      ..++...+....||+-|+|.|+. +++.-|..-|.
T Consensus       260 ~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        260 LYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence            34456777889999999999997 46677776664

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=90.31  E-value=1.7  Score=40.70  Aligned_cols=34  Identities=21%  Similarity=0.272  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHhhhccccchhccC-CCCCCccccc
Q 020367          152 PAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE  185 (327)
Q Consensus       152 a~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~  185 (327)
                      ..++.......+||.-|+|.||.+ .+.-|..-|+
T Consensus       169 ~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~  203 (285)
T PRK12872        169 FIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK  203 (285)
T ss_pred             HHHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence            334455666788999999999985 4556665554

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=89.55  E-value=1.9  Score=41.36  Aligned_cols=43  Identities=12%  Similarity=0.026  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHhhhccccchhccCCC-CCCccccccChHHHHHHHHH
Q 020367          152 PAVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLA  197 (327)
Q Consensus       152 a~~l~~~a~~~~Nd~~D~e~Dr~nk~-~RPlasG~ls~~~a~~~~~~  197 (327)
                      ...+....+...||+-|+|+||.+.+ .-|.   ++.++.+..+...
T Consensus       182 ~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~ly~~  225 (304)
T PRK07419        182 ILGLATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQLLPW  225 (304)
T ss_pred             HHHHHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHHHHH
Confidence            33456677888999999999998654 3333   3445555444333

>PLN02922 prenyltransferase

Probab=89.32  E-value=2  Score=41.44  Aligned_cols=47  Identities=11%  Similarity=0.109  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHhhhccccchhccCCCC-CCccccccChHHHHHHHHHH
Q 020367          149 ALVPAVLMHIYVVAINQLSDVEVDKVNKPY-LPLASGEISMGTGIAITLAS  198 (327)
Q Consensus       149 a~la~~l~~~a~~~~Nd~~D~e~Dr~nk~~-RPlasG~ls~~~a~~~~~~~  198 (327)
                      ..+...+....+...||+-|+|+||.++++ -|.   ++.++.+..+...+
T Consensus       193 ~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l  240 (315)
T PLN02922        193 ASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLV---RLGTEKGSRVVRWA  240 (315)
T ss_pred             HHHHHHHHHHHHHHHccCcchhhHHHcCccceee---EEChHHHHHHHHHH
Confidence            334445667788899999999999997653 333   34455555443333

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=89.10  E-value=1.9  Score=41.37  Aligned_cols=32  Identities=28%  Similarity=0.319  Sum_probs=23.8

Q ss_pred             HHHHHHHHHhhhccccchhccC-CCCCCccccc
Q 020367          154 VLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE  185 (327)
Q Consensus       154 ~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~  185 (327)
                      .+...+....||+.|.|.||.. ++.-|..-|+
T Consensus       199 ~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~  231 (314)
T PRK07566        199 SLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE  231 (314)
T ss_pred             HHHHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence            3455666899999999999974 5666765554

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=88.86  E-value=4.6  Score=38.13  Aligned_cols=36  Identities=19%  Similarity=0.170  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHhhhccccchhcc-CCCCCCccccc
Q 020367          150 LVPAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE  185 (327)
Q Consensus       150 ~la~~l~~~a~~~~Nd~~D~e~Dr~-nk~~RPlasG~  185 (327)
                      +++.++....-..+|++.|+|.|+. +.|.-|..-|.
T Consensus       166 ~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  202 (281)
T TIGR01474       166 YLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD  202 (281)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence            4455666667778999999999997 45677776664

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=88.08  E-value=2.7  Score=40.18  Aligned_cols=32  Identities=25%  Similarity=0.342  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHhhhccccchhccC-CCCCCcccc
Q 020367          153 AVLMHIYVVAINQLSDVEVDKVN-KPYLPLASG  184 (327)
Q Consensus       153 ~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG  184 (327)
                      .++...+....||+.|+|.|+.+ ++.-|..-|
T Consensus       192 ~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG  224 (306)
T TIGR02056       192 YSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFG  224 (306)
T ss_pred             HHHHHHHHHHHHHccChHHHHHcCCcCcchhcC
Confidence            34566777899999999999975 455555444

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=87.79  E-value=2.1  Score=41.56  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHhhhccccchhccC-CCCCCccccc
Q 020367          152 PAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE  185 (327)
Q Consensus       152 a~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~  185 (327)
                      ..++...+...+||+.|+|.|+.. ++.-|+.=|+
T Consensus       188 ~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~  222 (331)
T PRK12392        188 LNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGA  222 (331)
T ss_pred             HHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcH
Confidence            345566777789999999999975 4455654443

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=85.99  E-value=3.1  Score=39.59  Aligned_cols=36  Identities=17%  Similarity=0.170  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHhhhccccchhcc-CCCCCCccccc
Q 020367          150 LVPAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE  185 (327)
Q Consensus       150 ~la~~l~~~a~~~~Nd~~D~e~Dr~-nk~~RPlasG~  185 (327)
                      +++.++-+..-..+|++.|+|.|+. ..|.-|..-|.
T Consensus       168 ~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~  204 (291)
T PRK12886        168 GLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV  204 (291)
T ss_pred             HHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence            3444444555557888999999986 55777776665

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=85.98  E-value=10  Score=36.02  Aligned_cols=57  Identities=14%  Similarity=0.083  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHhhhccccchhccC-CCCCCccccccChHHHHHHHHHHHHHHHHHHHHhh
Q 020367          151 VPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEISMGTGIAITLASALMSLAYAVMIR  210 (327)
Q Consensus       151 la~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg  210 (327)
                      ++..+...+...+|++-|+|.|+.. ++.-|.   ++..+.+..+..++.+++..+-+..+
T Consensus       172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~~~~~~  229 (282)
T PRK12875        172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAAFAAVD  229 (282)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHHHHHHH
Confidence            3445666677899999999999974 444443   34455666555555555544433444

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=85.74  E-value=5.5  Score=37.81  Aligned_cols=57  Identities=9%  Similarity=0.095  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHhhhccccchhccCC-CCCCccccccChHHHHHHHHHHHHHHHHHHHHhh
Q 020367          151 VPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLASALMSLAYAVMIR  210 (327)
Q Consensus       151 la~~l~~~a~~~~Nd~~D~e~Dr~nk-~~RPlasG~ls~~~a~~~~~~~~~l~l~la~~lg  210 (327)
                      +++.+...+..++||+-|.|.||.+. +.-|.   ++.++.+..++..+.+++.+.....+
T Consensus       167 ~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        167 AAFFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444567778999999999999754 33332   55677777777777766665544444

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=85.73  E-value=4.1  Score=38.29  Aligned_cols=32  Identities=25%  Similarity=0.264  Sum_probs=22.8

Q ss_pred             HHHHHHHHHhhhccccchhccC-CCCCCccccc
Q 020367          154 VLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE  185 (327)
Q Consensus       154 ~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~  185 (327)
                      .+...+....||+-|.|.||.+ ++.-|..-|+
T Consensus       171 ~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~  203 (283)
T TIGR01476       171 SLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV  203 (283)
T ss_pred             HHHHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence            3445567899999999999985 4455654444

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=85.65  E-value=5.9  Score=37.25  Aligned_cols=35  Identities=17%  Similarity=0.097  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHhhhccccchhcc-CCCCCCcccc
Q 020367          150 LVPAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASG  184 (327)
Q Consensus       150 ~la~~l~~~a~~~~Nd~~D~e~Dr~-nk~~RPlasG  184 (327)
                      ++..++.+..-..+||..|+|.|+. +.|.-|..-|
T Consensus       164 ~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G  199 (282)
T TIGR01475       164 GIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFG  199 (282)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhc
Confidence            3444555666778999999999986 4566676666

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=85.64  E-value=4.4  Score=37.94  Aligned_cols=34  Identities=29%  Similarity=0.377  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHhhhccccchhccC-CCCCCccccc
Q 020367          152 PAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE  185 (327)
Q Consensus       152 a~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~  185 (327)
                      ..++........||+.|+|.|+.+ .+.-|..-|+
T Consensus       163 ~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~  197 (279)
T PRK12884        163 MAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGE  197 (279)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcH
Confidence            344555667889999999999975 4556655444

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=85.62  E-value=4.6  Score=38.32  Aligned_cols=47  Identities=11%  Similarity=0.020  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHhhhccccchhccCCC-CCCccccccChHHHHHHHHHHHH
Q 020367          151 VPAVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLASAL  200 (327)
Q Consensus       151 la~~l~~~a~~~~Nd~~D~e~Dr~nk~-~RPlasG~ls~~~a~~~~~~~~~  200 (327)
                      +...+........||+-|+|+|+.+.+ .-|.   ++.++.+..+...+..
T Consensus       168 l~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~  215 (285)
T TIGR02235       168 ILVGLATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVIS  215 (285)
T ss_pred             HHHHHHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHHH
Confidence            344466778889999999999998654 3333   4445555554444433

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=85.12  E-value=5  Score=37.87  Aligned_cols=47  Identities=21%  Similarity=0.246  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHhhhccccchhccCC-CCCCccccccChHHHHHHHHHHHH
Q 020367          151 VPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLASAL  200 (327)
Q Consensus       151 la~~l~~~a~~~~Nd~~D~e~Dr~nk-~~RPlasG~ls~~~a~~~~~~~~~  200 (327)
                      +...+........||+-|+|.||.++ +.-|.   ++..+.+..+...+..
T Consensus       175 l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v---~lG~~~a~~~~~~l~~  222 (293)
T PRK06080        175 LPCGLLIGAVLLANNIRDIETDRENGKNTLAV---RLGDKNARRLHAALLA  222 (293)
T ss_pred             HHHHHHHHHHHHhcCCCcchhHHHcCCeeEEe---eECcHhHHHHHHHHHH
Confidence            34455667777999999999999864 33343   3344444444444333

>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed

Probab=85.07  E-value=11  Score=37.70  Aligned_cols=21  Identities=19%  Similarity=0.273  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHhhhccccch
Q 020367          151 VPAVLMHIYVVAINQLSDVEV  171 (327)
Q Consensus       151 la~~l~~~a~~~~Nd~~D~e~  171 (327)
                      -+..++..--..+|++++.+.
T Consensus       112 ta~~~~~~ie~a~N~Iw~v~~  132 (412)
T PRK04214        112 TLLILLHTIEQTFNRIWRVNS  132 (412)
T ss_pred             HHHHHHHHHHHHHHHHhCCCC
Confidence            334556666789999998754

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=85.04  E-value=5.9  Score=38.00  Aligned_cols=30  Identities=13%  Similarity=0.282  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHhhhccccchhccCC-CCCCc
Q 020367          152 PAVLMHIYVVAINQLSDVEVDKVNK-PYLPL  181 (327)
Q Consensus       152 a~~l~~~a~~~~Nd~~D~e~Dr~nk-~~RPl  181 (327)
                      ..++...+...+||+-|+|.||.++ +.-|.
T Consensus       190 ~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav  220 (308)
T PRK12887        190 FVLVFTFAIAIFKDIPDMEGDRQYQITTFTL  220 (308)
T ss_pred             HHHHHHHHHHHHHhccchhhHHHcCCcchhH
Confidence            4445666777899999999999864 34443

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=84.82  E-value=4.7  Score=38.06  Aligned_cols=36  Identities=14%  Similarity=0.044  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHhhhccccchhccC-CCCCCccccc
Q 020367          150 LVPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE  185 (327)
Q Consensus       150 ~la~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~  185 (327)
                      ++..++....-...|++.|+|.|+.+ .+.-|..-|.
T Consensus       171 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~  207 (285)
T PRK12847        171 YIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN  207 (285)
T ss_pred             HHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence            34455566666688999999999975 4566665554

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=83.76  E-value=7.8  Score=36.29  Aligned_cols=35  Identities=26%  Similarity=0.340  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHhhhccccchhccCC-CCCCccccc
Q 020367          151 VPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGE  185 (327)
Q Consensus       151 la~~l~~~a~~~~Nd~~D~e~Dr~nk-~~RPlasG~  185 (327)
                      +..++...+-..+||+-|.|.|+.++ |.-|..-|+
T Consensus       164 ~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~  199 (276)
T PRK12882        164 ALAALATLAREIIKDVEDIEGDRAEGARTLPILIGV  199 (276)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhH
Confidence            33345556678999999999999754 556654444

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=83.23  E-value=5.8  Score=37.43  Aligned_cols=39  Identities=10%  Similarity=0.015  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHhhhccccchhccC-CCCCCcccccc
Q 020367          148 EALVPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEI  186 (327)
Q Consensus       148 la~la~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~l  186 (327)
                      +.++..++-...-...|.+.|+|.|+.. .|.-|..-|.-
T Consensus       166 ~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~  205 (282)
T PRK12848        166 LLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRY  205 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccc
Confidence            3345556666666788999999999974 46667666653

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=83.14  E-value=13  Score=35.50  Aligned_cols=36  Identities=17%  Similarity=0.159  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHhhhccccchhccC-CCCCCcccccc
Q 020367          151 VPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEI  186 (327)
Q Consensus       151 la~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~l  186 (327)
                      +..++.+..-...||+.|+|.|+.+ .+.-|+.-|+-
T Consensus       182 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~  218 (297)
T PRK12871        182 VFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMK  218 (297)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechH
Confidence            4455567777899999999999974 56777766653

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=82.15  E-value=7.1  Score=37.00  Aligned_cols=36  Identities=22%  Similarity=0.033  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHhhhccccchhccC-CCCCCccccc
Q 020367          150 LVPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE  185 (327)
Q Consensus       150 ~la~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~  185 (327)
                      .+...+....-..+|++-|+|.|+.. .+.-|..-|.
T Consensus       165 ~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~  201 (284)
T PRK12888        165 GLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV  201 (284)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence            34555666677899999999999974 4566665554

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=81.58  E-value=7.4  Score=36.94  Aligned_cols=44  Identities=18%  Similarity=0.156  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHhhhccccchhccCCC-CCCccccccChHHHHHHHHHHH
Q 020367          153 AVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLASA  199 (327)
Q Consensus       153 ~~l~~~a~~~~Nd~~D~e~Dr~nk~-~RPlasG~ls~~~a~~~~~~~~  199 (327)
                      ..+........|+.-|+|.|+.+.+ .-|.   ++.++.+..+...+.
T Consensus       173 ~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v---~lG~~~a~~l~~~l~  217 (284)
T TIGR00751       173 TGLLACAVLNINNLRDIPTDARAGKNTLAV---RLGDARTRMYHQGLL  217 (284)
T ss_pred             HHHHHHHHHHHcCcccchhHHHcCCEeehh---hcchHhHHHHHHHHH
Confidence            3455677788999999999998654 3332   444555554443333

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=81.01  E-value=6.5  Score=36.82  Aligned_cols=31  Identities=26%  Similarity=0.472  Sum_probs=22.6

Q ss_pred             HHHHHHHHhhhccccchhccC-CCCCCccccc
Q 020367          155 LMHIYVVAINQLSDVEVDKVN-KPYLPLASGE  185 (327)
Q Consensus       155 l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~  185 (327)
                      +...+....||.-|+|.|+.. .+.-|..-|.
T Consensus       165 l~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~  196 (277)
T PRK12883        165 LVNVAREIMKDIEDIEGDKAKGAKTLPIIIGK  196 (277)
T ss_pred             HHHHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence            344566688999999999974 5666766554

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=80.15  E-value=7.7  Score=36.41  Aligned_cols=34  Identities=24%  Similarity=0.215  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHhhhccccchhcc-CCCCCCccccc
Q 020367          152 PAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE  185 (327)
Q Consensus       152 a~~l~~~a~~~~Nd~~D~e~Dr~-nk~~RPlasG~  185 (327)
                      ..++.+.+-...||+-|+|.|+. +.|.-|..-|.
T Consensus       162 ~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~  196 (279)
T PRK09573        162 CAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGI  196 (279)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhH
Confidence            34455566677899999999997 45666765553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00