Citrus Sinensis ID: 020385

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
Protein Sequence
MLLFPFLNLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVTEIESS
Secondary Structure (PSIPRED)
ccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mllfpflnlrdtKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEktgaldekfsQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNsigtllpvteiess
Flexible Loop (DISEMBL)
mllfpflnlrdtkmNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIqdlnkhqvslrtTLNKLKEKTGALDEKFSQTEFDLVQSvqqnadlrskivqspeklqrtleeKKSIREEARDAEKLamqsfqekttTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSlkarlnddvVLDKSLEAKLierqgkveqlDELQQQLekernlksedatRAFENVKLEMESKRQDLEARQKKVEAVVTevdaitsktkfvkesGAAKLQELASKAEEIVEKFQQytnsigtllpvteiess
Low Complexity Region (SEG)
MLLFPFLNLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVeqldelqqqlekeRNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVTEIESS
Disordered region (IsUnstruct)
**LFPFLNLRDTKMNLLRPIA*********************AEIAAYNEVRERELPLVQEVDAKVK*L***I*************************************************************************************************************************************V****************************************************************VVTEVDAIT***********************IVEKFQQYTNSIGTLLP*******
Disordered Region (DISOPRED)
MLLFPFLNLRDTKMNLLR******************************************************************************************************************************************************************************************************************************************************************************************AEEIVEKFQQYTNSIGTLLPVTEI***
Disordered Region (DISEMBL)
MLLFPFLNLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKT**********MQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEM****************VVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVTEIESS
Disordered Region (DISPRO)
MLLFPFLNLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVTEI***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLFPFLNLRDTKMNLLRPIAEDxxxxxxxxxxxxxxxxxxxxxxxxxxxxRERELPLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKxxxxxxxxxxxxxxxxxxxxxAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAxxxxxxxxxxxxxxxxxxxxxxxxxVTEVDAITSKTKFVKESGAAKxxxxxxxxxxxxxxxxxxxxxIGTLLPVTEIESS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
224093272	442	predicted protein [Populus trichocarpa]	0.969	0.717	0.681	1e-115
255576776	450	kinetochore protein nuf2, putative [Rici	0.969	0.704	0.681	1e-115
225447975	453	PREDICTED: kinetochore protein Nuf2 [Vit	0.978	0.706	0.653	1e-106
224140705	429	predicted protein [Populus trichocarpa]	0.932	0.710	0.659	1e-103
225430476	453	PREDICTED: probable kinetochore protein	0.981	0.708	0.641	3e-99
147852218	473	hypothetical protein VITISV_036492 [Viti	0.969	0.670	0.646	4e-99
449486560	393	PREDICTED: kinetochore protein Nuf2-like	0.981	0.816	0.567	3e-91
356512606	461	PREDICTED: uncharacterized protein LOC10	0.975	0.691	0.582	5e-91
449452094	446	PREDICTED: kinetochore protein Nuf2-like	0.981	0.719	0.567	6e-91
145336916	440	kinetochore protein Nuf2 [Arabidopsis th	0.951	0.706	0.514	8e-79

>gi|224093272|ref|XP_002309861.1| predicted protein [Populus trichocarpa] gi|222852764|gb|EEE90311.1| predicted protein [Populus trichocarpa]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/317 (68%), Positives = 262/317 (82%)

Query: 3   LFPFLNLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEV 62
           +  F   +D+KMN LRPI E+LT LDEQR  LEDKISQLNAEIA YN+ RERELPL QEV
Sbjct: 121 ILNFCLHKDSKMNELRPIGEELTLLDEQRRGLEDKISQLNAEIAEYNDARERELPLAQEV 180

Query: 63  DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 122
           D KVKELRQ I DLN HQ+SLR +  KLKE++  +D + S+ EFDLVQSVQ+NA+LRSKI
Sbjct: 181 DGKVKELRQEIADLNNHQMSLRASYRKLKERSSEMDGEISRAEFDLVQSVQENANLRSKI 240

Query: 123 VQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 182
           VQSP+KLQR LEEKKS+REEAR+AE+LAMQSF+ KT  LEVY K LKKMSK   QMQAI 
Sbjct: 241 VQSPDKLQRALEEKKSVREEARNAERLAMQSFEAKTAVLEVYTKALKKMSKHFDQMQAIH 300

Query: 183 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 242
           EQVNSAKSIEKDYK+LKA+L+DD ++DKSL+AKL+E Q K +QL+EL++ LEKER++K E
Sbjct: 301 EQVNSAKSIEKDYKALKAKLSDDGLMDKSLDAKLVELQMKAQQLNELKKLLEKERDMKCE 360

Query: 243 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 302
           +AT+ +  +K E+ESKR DLEARQ++VEAV++EVDAITSKT  V ESGAAK+Q+L SK E
Sbjct: 361 EATKEYNTIKSEVESKRHDLEARQRRVEAVLSEVDAITSKTNMVNESGAAKVQKLVSKRE 420

Query: 303 EIVEKFQQYTNSIGTLL 319
           EI E+F++Y NSI  LL
Sbjct: 421 EIAEQFKKYKNSIEPLL 437

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576776|ref|XP_002529275.1| kinetochore protein nuf2, putative [Ricinus communis] gi|223531264|gb|EEF33107.1| kinetochore protein nuf2, putative [Ricinus communis]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/317 (68%), Positives = 259/317 (81%)

Query: 3   LFPFLNLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEV 62
           +  F   +DTKMNLLR I E+LT LDEQR E EDKISQLNAEIA YN  RE ELP VQEV
Sbjct: 121 ILNFCLHKDTKMNLLRSIGEELTLLDEQRKEWEDKISQLNAEIAEYNVAREMELPFVQEV 180

Query: 63  DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 122
           DAKVKELRQT+ +LN HQ+SLR +  KLKEK G LD + S+ EFDLVQSVQ+NA+LRSKI
Sbjct: 181 DAKVKELRQTVSELNNHQMSLRASSRKLKEKAGELDGEISKAEFDLVQSVQENANLRSKI 240

Query: 123 VQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 182
           VQSP+KLQR LEEKKS+ EE ++AE+LAMQSFQEKT  LEVY KTL+K+SK   QMQ I 
Sbjct: 241 VQSPDKLQRALEEKKSVWEEVKNAERLAMQSFQEKTAILEVYSKTLRKISKHFNQMQEIH 300

Query: 183 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 242
           E+VNSAKSIEKDYK LKA+L+++ +LDK L+AKL+ERQ K +QLDEL++ LEKE++LK E
Sbjct: 301 EEVNSAKSIEKDYKELKAKLSNEGMLDKKLDAKLVERQAKAQQLDELRKVLEKEKDLKCE 360

Query: 243 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 302
           DA R F NVK E+ES+R DLEARQ+KVE +V+EVDAIT KT  VKESGAAK+QEL  K E
Sbjct: 361 DAAREFNNVKSEVESRRVDLEARQRKVEVIVSEVDAITLKTNMVKESGAAKVQELVYKCE 420

Query: 303 EIVEKFQQYTNSIGTLL 319
           +I E+F+QY NS+G ++
Sbjct: 421 QIAEQFEQYRNSMGLVM 437

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447975|ref|XP_002269064.1| PREDICTED: kinetochore protein Nuf2 [Vitis vinifera] gi|298204517|emb|CBI23792.3| unnamed protein product [Vitis vinifera]

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/320 (65%), Positives = 251/320 (78%)

Query: 6   FLNLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAK 65
           F   +D+KMN LRPI E+   LDE+R  LED+ISQL+AEI  YNE RER +PLVQE++ K
Sbjct: 123 FFLHKDSKMNELRPIVEESNLLDEERKLLEDRISQLDAEITDYNEARERAMPLVQEIEVK 182

Query: 66  VKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQS 125
           VK+LRQ I  LN  Q+SLRT+  K+KEK   +DEK S  EF LVQSVQ+NA+LRSKIVQS
Sbjct: 183 VKDLRQAIPSLNNQQMSLRTSFRKMKEKVAEMDEKISSAEFALVQSVQENANLRSKIVQS 242

Query: 126 PEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQV 185
           P+KLQRTLEEKKS+R EA++AE+ AMQSFQEK+  +EVY K  KKMSK  AQMQAI EQV
Sbjct: 243 PDKLQRTLEEKKSVRVEAKNAERSAMQSFQEKSAIVEVYTKAGKKMSKHFAQMQAIQEQV 302

Query: 186 NSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDAT 245
           NSAK+IEKD K LK +L+++ VLDKS EAKL+ERQ KVEQLDEL++QLEKERN K E+A 
Sbjct: 303 NSAKAIEKDLKVLKTKLSEEGVLDKSFEAKLLERQRKVEQLDELRKQLEKERNFKCEEAA 362

Query: 246 RAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIV 305
           +   NVKL +ESKR++LEARQ+KVEA   EVDA T K   VKESGAAK Q+L  K EEIV
Sbjct: 363 KELNNVKLAVESKRRELEARQRKVEAEAAEVDATTLKINSVKESGAAKQQKLTRKGEEIV 422

Query: 306 EKFQQYTNSIGTLLPVTEIE 325
           ++F QY NSIG LLP  ++E
Sbjct: 423 KEFHQYANSIGVLLPRIQVE 442

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140705|ref|XP_002323719.1| predicted protein [Populus trichocarpa] gi|222866721|gb|EEF03852.1| predicted protein [Populus trichocarpa]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/305 (65%), Positives = 242/305 (79%)

Query: 3   LFPFLNLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEV 62
           +  F   +D+KMN LRPI E+L+ LDEQR E +DKISQLNAEIA YN+ RERELPLVQ+V
Sbjct: 121 ILNFCLHKDSKMNELRPIGEELSLLDEQRREFDDKISQLNAEIAEYNDARERELPLVQDV 180

Query: 63  DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 122
           D KVKELRQ I DLN HQ+S R T  KLKE +  +D + S+ EFDLVQSVQ+N +LRSKI
Sbjct: 181 DGKVKELRQRIGDLNNHQMSQRATYRKLKEMSTEMDGEISRAEFDLVQSVQENVNLRSKI 240

Query: 123 VQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 182
           VQSP+KLQR LEEKKS+R++AR+AE+LAMQSFQ KT  LEVY K  KKMSK   QMQAI 
Sbjct: 241 VQSPDKLQRALEEKKSVRQDARNAERLAMQSFQAKTDVLEVYTKASKKMSKHFNQMQAIH 300

Query: 183 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 242
           EQVNSAKSIEKDYK+LKA+L  D ++DKSL AKL+E Q K +QLDE ++ LEKER+ K E
Sbjct: 301 EQVNSAKSIEKDYKALKAKLGYDELMDKSLGAKLVELQVKAQQLDECKKLLEKERDAKCE 360

Query: 243 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 302
           +AT  F N+K E+ES+R DL ARQ+KVE V+T+VDAITSKT  VKESG A++Q+L  K E
Sbjct: 361 EATEEFNNIKSEVESRRHDLGARQRKVEDVLTKVDAITSKTNMVKESGVAEVQKLVHKRE 420

Query: 303 EIVEK 307
           EI E+
Sbjct: 421 EIAEQ 425

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430476|ref|XP_002283312.1| PREDICTED: probable kinetochore protein NUF2 [Vitis vinifera] gi|296082133|emb|CBI21138.3| unnamed protein product [Vitis vinifera]

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 206/321 (64%), Positives = 250/321 (77%)

Query: 6   FLNLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAK 65
           F   +D+KMN LRPI E+LT LDEQR++ +D+ISQL+AEIA  +E RERE PLV+EV+ K
Sbjct: 123 FFLHKDSKMNDLRPIVEELTLLDEQRNQFKDRISQLDAEIADCSEARERERPLVEEVEVK 182

Query: 66  VKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQS 125
           VKELRQTI  LN  Q+SLR +  K+KEK   +DEK S  EF LVQSVQ+NA+LRSKI+QS
Sbjct: 183 VKELRQTIPSLNNQQMSLRASFRKMKEKVTEMDEKISSAEFALVQSVQENANLRSKIIQS 242

Query: 126 PEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQV 185
           P+KLQR LEEKKS R E ++AEK AMQSFQEK+  LEVY K  KKMSK  AQMQ I EQV
Sbjct: 243 PDKLQRALEEKKSDRIEVKNAEKSAMQSFQEKSAILEVYTKAGKKMSKHFAQMQTIQEQV 302

Query: 186 NSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDAT 245
           NSAK+IEKD K +K +L+++ VL+KSLEAKL+E QGKVEQLD+L++QLEKER+ K E+A 
Sbjct: 303 NSAKAIEKDLKVIKTKLSEEGVLEKSLEAKLVEWQGKVEQLDDLRKQLEKERDFKCEEAA 362

Query: 246 RAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIV 305
           +   NVKL +ES R +LEARQKKVEA   EVD IT K   VKESGAAK QEL SK EEI+
Sbjct: 363 KELNNVKLAVESSRHELEARQKKVEAQAAEVDGITLKINSVKESGAAKQQELISKGEEIM 422

Query: 306 EKFQQYTNSIGTLLPVTEIES 326
           ++F  Y NSIG LLP  ++E+
Sbjct: 423 KEFHLYANSIGVLLPRIQVET 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852218|emb|CAN82250.1| hypothetical protein VITISV_036492 [Vitis vinifera]

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 205/317 (64%), Positives = 248/317 (78%)

Query: 10  RDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKEL 69
           +D+KMN LRPI E+LT LDEQR++ +D+ISQL+AEIA  +E RERE PLV+EV+ KVKEL
Sbjct: 147 KDSKMNDLRPIVEELTLLDEQRNQFKDRISQLDAEIADCSEARERERPLVEEVEVKVKEL 206

Query: 70  RQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL 129
           RQTI  LN  Q+SLR +  K+KEK   +DEK S  EF LVQSVQ+NA+LRSKI+QSP+KL
Sbjct: 207 RQTIPSLNNQQMSLRASFRKMKEKVTEMDEKISSAEFALVQSVQENANLRSKIIQSPDKL 266

Query: 130 QRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAK 189
           QR LEEKKS R E ++AEK AMQSFQEK+  LEVY K  KKMSK  AQMQ I EQVNSAK
Sbjct: 267 QRALEEKKSDRIEVKNAEKSAMQSFQEKSAILEVYTKAGKKMSKHFAQMQTIQEQVNSAK 326

Query: 190 SIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFE 249
           +IEKD K +K +L+++ VL KSLEAKL+E QGKVEQLD+L++QLEKER+ K E+A +   
Sbjct: 327 AIEKDLKVIKTKLSEEGVLXKSLEAKLVEWQGKVEQLDDLRKQLEKERDFKCEEAAKELN 386

Query: 250 NVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ 309
           NVKL +ES R +LEARQKKVEA   EVD IT K   VKESGAAK QEL SK EEI+++F 
Sbjct: 387 NVKLAVESSRHELEARQKKVEAQAAEVDGITLKINSVKESGAAKQQELISKGEEIMKEFH 446

Query: 310 QYTNSIGTLLPVTEIES 326
            Y NSIG LLP  ++E+
Sbjct: 447 LYANSIGVLLPRIQVET 463

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449486560|ref|XP_004157332.1| PREDICTED: kinetochore protein Nuf2-like [Cucumis sativus]

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 184/324 (56%), Positives = 233/324 (71%), Gaps = 3/324 (0%)

Query: 1   MLLFPFLNL---RDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELP 57
           + L   LN    +D KMN   P+  +L    +Q+ E E K SQLNAEI  YNE RERE+P
Sbjct: 63  IFLSAILNFGIHKDAKMNFHAPVMNELDTFADQQREWEVKTSQLNAEITEYNEAREREMP 122

Query: 58  LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNAD 117
            VQE+DAKVKEL QTI  LN  QVSLR ++ KLKEK G +DEK S  EF LVQSVQ+NA+
Sbjct: 123 FVQEIDAKVKELHQTIGGLNNQQVSLRASIRKLKEKAGEMDEKISNAEFLLVQSVQENAN 182

Query: 118 LRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQ 177
           LRSKIVQSP+KLQR LEEKK  REEA++AEKLAMQ+ QEKT  +EVY K  KKM K  + 
Sbjct: 183 LRSKIVQSPDKLQRALEEKKLAREEAKNAEKLAMQACQEKTGIVEVYSKVSKKMLKHLSL 242

Query: 178 MQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKER 237
           MQ I EQVNSAKS+E+++K+LK +L+D+ V DKSL+ KL+E Q KV QL +L +Q EKER
Sbjct: 243 MQTIHEQVNSAKSVEREFKALKVKLSDEEVQDKSLQVKLVELQAKVHQLKDLVRQTEKER 302

Query: 238 NLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQEL 297
           ++  E+AT+    V+ ++ES R DLE RQ+ VEAV  EVD +TSKT  +++S   K QEL
Sbjct: 303 DVTCEEATKDLIAVRSQVESLRHDLEQRQRNVEAVFMEVDVLTSKTNSIRQSSVLKQQEL 362

Query: 298 ASKAEEIVEKFQQYTNSIGTLLPV 321
            +K E I+++F QYTN +G L+ V
Sbjct: 363 LNKCESIIKEFHQYTNLVGALMEV 386

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512606|ref|XP_003525009.1| PREDICTED: uncharacterized protein LOC100815227 [Glycine max]

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 188/323 (58%), Positives = 242/323 (74%), Gaps = 4/323 (1%)

Query: 1   MLLFPFLNL---RDTKMNLLRPIAEDLTRLDEQRSELE-DKISQLNAEIAAYNEVREREL 56
           + L   LN    RD +MN +  I E++  L+ QR+ELE ++I QL AEI+  NE +ERE+
Sbjct: 118 LFLGSLLNFCLDRDARMNSVSEIVEEVNALEAQRTELEENRILQLKAEISECNEAKEREM 177

Query: 57  PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNA 116
           PLV+EV+AKVKEL+QTI  LN +Q SLR+TL KLKEKTG  DEK S  EF LVQ+VQ+NA
Sbjct: 178 PLVEEVEAKVKELKQTIAVLNSNQSSLRSTLRKLKEKTGETDEKISNAEFTLVQNVQENA 237

Query: 117 DLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSA 176
           +LRSKI QSP+K+QR LEEKK  REEAR+AE+LAMQ+F EKT  +EV+ K  KKMSK + 
Sbjct: 238 NLRSKISQSPDKVQRALEEKKLAREEARNAERLAMQAFHEKTALVEVFSKVYKKMSKHNK 297

Query: 177 QMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKE 236
            MQ I EQVNSAKSIEKD K+LKA+L+D+ +L+KSLEAKL+E+Q KVEQ++E ++QLEKE
Sbjct: 298 LMQDIQEQVNSAKSIEKDLKALKAKLSDEEILEKSLEAKLVEKQSKVEQMEESRKQLEKE 357

Query: 237 RNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQE 296
            N+  E+AT+   + K ++ESKR   E RQK VEAV++EVDAI+SK   VKE+GA K+  
Sbjct: 358 SNIMWEEATKYLSSTKSDVESKRSATETRQKNVEAVLSEVDAISSKIISVKEAGAVKVAL 417

Query: 297 LASKAEEIVEKFQQYTNSIGTLL 319
           L  K EE+VE F  Y N I  ++
Sbjct: 418 LVRKCEELVEAFHNYANPIARVI 440

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452094|ref|XP_004143795.1| PREDICTED: kinetochore protein Nuf2-like [Cucumis sativus]

 Score =  340 bits (872), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 184/324 (56%), Positives = 233/324 (71%), Gaps = 3/324 (0%)

Query: 1   MLLFPFLNL---RDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELP 57
           + L   LN    +D KMN   P+  +L    +Q+ E E K SQLNAEI  YNE RERE+P
Sbjct: 116 IFLSAILNFGIHKDAKMNFHAPVMNELDTFADQQREWEVKTSQLNAEITEYNEAREREMP 175

Query: 58  LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNAD 117
            VQE+DAKVKEL QTI  LN  QVSLR ++ KLKEK G +DEK S  EF LVQSVQ+NA+
Sbjct: 176 FVQEIDAKVKELHQTIGGLNNQQVSLRASIRKLKEKAGEMDEKISNAEFLLVQSVQENAN 235

Query: 118 LRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQ 177
           LRSKIVQSP+KLQR LEEKK  REEA++AEKLAMQ+ QEKT  +EVY K  KKM K  + 
Sbjct: 236 LRSKIVQSPDKLQRALEEKKLAREEAKNAEKLAMQACQEKTGIVEVYSKVSKKMLKHLSL 295

Query: 178 MQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKER 237
           MQ I EQVNSAKS+E+++K+LK +L+D+ V DKSL+ KL+E Q KV QL +L +Q EKER
Sbjct: 296 MQTIHEQVNSAKSVEREFKALKVKLSDEEVQDKSLQVKLVELQAKVHQLKDLVRQTEKER 355

Query: 238 NLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQEL 297
           ++  E+AT+    V+ ++ES R DLE RQ+ VEAV  EVD +TSKT  +++S   K QEL
Sbjct: 356 DVTCEEATKDLIAVRSQVESLRHDLEQRQRNVEAVFMEVDVLTSKTNSIRQSSVLKQQEL 415

Query: 298 ASKAEEIVEKFQQYTNSIGTLLPV 321
            +K E I+++F QYTN +G L+ V
Sbjct: 416 LNKCESIIKEFHQYTNLVGALMEV 439

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145336916|ref|NP_176296.2| kinetochore protein Nuf2 [Arabidopsis thaliana] gi|19423962|gb|AAL87331.1| unknown protein [Arabidopsis thaliana] gi|22136892|gb|AAM91790.1| unknown protein [Arabidopsis thaliana] gi|332195644|gb|AEE33765.1| kinetochore protein Nuf2 [Arabidopsis thaliana]

 Score =  300 bits (767), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 160/311 (51%), Positives = 235/311 (75%)

Query: 10  RDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKEL 69
           +D+KM+L+RP AE+L  LDEQR + E K++QLNAEI  ++E  ER+LP VQE++A +++L
Sbjct: 128 KDSKMDLIRPKAEELGLLDEQRKQCEAKVAQLNAEIGEFDEAVERDLPFVQELEANIEQL 187

Query: 70  RQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL 129
            + I +LN  Q+SLR T  K++EK+  +D + S+ EFDLV++VQ+NA+LRS+IVQSP+KL
Sbjct: 188 NKKILELNNQQMSLRATFQKMREKSTQMDNEISKAEFDLVETVQENANLRSQIVQSPDKL 247

Query: 130 QRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAK 189
           Q  LEEKK +  E + AE+ AM +FQEK   LEV++K LKK+ K S+Q+Q I EQV +AK
Sbjct: 248 QGALEEKKLVLGETKKAEQSAMVTFQEKAAILEVFEKALKKILKSSSQLQLINEQVTNAK 307

Query: 190 SIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFE 249
           ++EK++K+LK +L++D V  KSLEAK++ER+  VEQL+E  +QLEKE+ +  +D T+   
Sbjct: 308 TVEKEFKALKDKLSEDGVAYKSLEAKVVERERIVEQLNESLKQLEKEKAVMFDDWTKQLN 367

Query: 250 NVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ 309
            +K+E+ES+R++LE RQ  VE+VV  VD  T+KT  V++SG AK+++LA+K EEIV++F 
Sbjct: 368 ELKVEVESRRRELETRQTNVESVVAMVDDNTAKTNQVRQSGEAKVKKLAAKYEEIVKQFH 427

Query: 310 QYTNSIGTLLP 320
           +YT S    LP
Sbjct: 428 EYTVSFDAFLP 438

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
TAIR|locus:2206071	440	AT1G61000 [Arabidopsis thalian	0.951	0.706	0.485	6.5e-74
ZFIN|ZDB-GENE-050208-275	2037	golga4 "golgin A4" [Danio reri	0.862	0.138	0.243	1.8e-10
DICTYBASE|DDB_G0286985	1024	zipA "zipper-like domain-conta	0.886	0.283	0.235	2.9e-10
ASPGD|ASPL0000042966	1153	AN2480 [Emericella nidulans (t	0.850	0.241	0.234	1.6e-09
ZFIN|ZDB-GENE-030131-6206	1937	myhc4 "myosin heavy chain 4" [	0.853	0.144	0.246	3e-09
TAIR|locus:2045412	1333	AT2G32240 "AT2G32240" [Arabido	0.889	0.218	0.216	3.3e-09
ZFIN|ZDB-GENE-040426-1121	454	nuf2 "NUF2, NDC80 kinetochore	0.923	0.665	0.184	3.3e-09
ZFIN|ZDB-GENE-010328-15	1048	hip1 "huntingtin interacting p	0.743	0.231	0.225	4.8e-09
UNIPROTKB|F1SS62	1470	MYH1 "Myosin-1" [Sus scrofa (t	0.896	0.199	0.228	4.8e-09
UNIPROTKB|F1SS66	1935	MYH13 "Uncharacterized protein	0.877	0.148	0.230	5.1e-09

TAIR|locus:2206071 AT1G61000 [Arabidopsis thaliana (taxid:3702)]

 Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
 Identities = 151/311 (48%), Positives = 224/311 (72%)

Query:    10 RDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKEL 69
             +D+KM+L+RP AE+L  LDEQR + E K++QLNAEI  ++E  ER+LP VQE++A +++L
Sbjct:   128 KDSKMDLIRPKAEELGLLDEQRKQCEAKVAQLNAEIGEFDEAVERDLPFVQELEANIEQL 187

Query:    70 RQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL 129
              + I +LN  Q+SLR T  K++EK+  +D + S+ EFDLV++VQ+NA+LRS+IVQSP+KL
Sbjct:   188 NKKILELNNQQMSLRATFQKMREKSTQMDNEISKAEFDLVETVQENANLRSQIVQSPDKL 247

Query:   130 QRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAK 189
             Q  LEEKK +  E + AE+ AM +FQEK   LEV++K LKK+ K S+Q+Q I EQV +AK
Sbjct:   248 QGALEEKKLVLGETKKAEQSAMVTFQEKAAILEVFEKALKKILKSSSQLQLINEQVTNAK 307

Query:   190 SIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVXXXXXXXXXXXXXRNLKSEDATRAFE 249
             ++EK++K+LK +L++D V  KSLEAK++ER+  V             + +  +D T+   
Sbjct:   308 TVEKEFKALKDKLSEDGVAYKSLEAKVVERERIVEQLNESLKQLEKEKAVMFDDWTKQLN 367

Query:   250 NVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ 309
              +K+E+ES+R++LE RQ  VE+VV  VD  T+KT  V++SG AK+++LA+K EEIV++F 
Sbjct:   368 ELKVEVESRRRELETRQTNVESVVAMVDDNTAKTNQVRQSGEAKVKKLAAKYEEIVKQFH 427

Query:   310 QYTNSIGTLLP 320
             +YT S    LP
Sbjct:   428 EYTVSFDAFLP 438

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0007067 "mitosis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

ZFIN|ZDB-GENE-050208-275 golga4 "golgin A4" [Danio rerio (taxid:7955)]

 Score = 181 (68.8 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 74/304 (24%), Positives = 145/304 (47%)

Query:    20 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKE-----LRQTIQ 74
             ++E+L     Q S+LE  I+ L  ++A+    +E  + L+ +  +K KE     + +T++
Sbjct:  1314 VSENLKANILQISDLESAINDLKTQLASSITEKEEAISLLNQQHSKDKERVTSQMGETVE 1373

Query:    75 DLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQN-ADLRSKIVQSPEKLQRTL 133
              L K +  L+  ++ L+ K   L +KFSQ+    V+S+Q   AD+  +I +   +LQ TL
Sbjct:  1374 KLEKEKTLLQEQVDSLRNKFSELKKKFSQSH-STVKSLQDKLADMERQIAEKDGQLQ-TL 1431

Query:   134 EEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEK 193
                 S+   +    ++  Q+  EK   +      L+  SK+   ++   EQ+   +  E+
Sbjct:  1432 TA--SVDNHSISKSEMD-QALSEKDQRVHALTSELESCSKKVCDLE---EQLQ-LRVKER 1484

Query:   194 DYKSLKARLNDDVVLDKSLEAKLIERQGKVXXXXXXXXXXXXXRNLKSEDATRAFENVKL 253
             D   L A L     + +S + +L+++  +                   +   +  E+ K 
Sbjct:  1485 D--QLAADLQQHHNIRESEKTELMKQVQEAQDQSSQNGALMQKTEESLQSLRKDIESAKQ 1542

Query:   254 EMESKRQDLEARQKKVEAVVTEVDAI-TSKTKFVKESGAAKLQELASKAEEIVEKFQ-QY 311
             E+ES+R+D E  ++K E +  + +A+  ++ K   E+G  K+ EL  KAE+ +   + Q 
Sbjct:  1543 ELESQRKDFE--REKAEILKEKKEAVKAAQVKASSETGV-KVAELKKKAEQKIGMIRKQL 1599

Query:   312 TNSI 315
             T+ I
Sbjct:  1600 TSQI 1603

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 176 (67.0 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 74/314 (23%), Positives = 157/314 (50%)

Query:     8 NLRDTKMNLLRPIAEDL-TRLDEQRS---ELEDKISQLNAEIAAYNEVRERELPLVQEVD 63
             N+ D K   +  + + L  +  EQ++    L+++ISQL  ++A+ N+  E      Q + 
Sbjct:   411 NITDEKDFQIEKLVDQLEAKQSEQQTTTNNLQNEISQLKQQLAS-NQSTES-----QALQ 464

Query:    64 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV 123
             +K+ EL Q   +  K Q       N+L+ K   L E  S+ +  L++   +++  + + +
Sbjct:   465 SKITELSQLQSEFEKLQ-------NQLQSKDSELLET-SKKQSALLEQQSEDSQSKDEKL 516

Query:   124 QSPE-KLQRTLEEKKSIREEARDAE-KLAMQS--FQEKTTTLEVYQKTLKKMSKQSAQMQ 179
             +S E  LQ+TL++ +S  +E ++ + +L  QS   + K   L+  + TL++  +Q   ++
Sbjct:   517 KSVELNLQQTLQQLQSKDQELQNVKSQLEQQSEDSESKDQKLKSVELTLQQTLQQLQDVK 576

Query:   180 AILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVXXXXXXXXXXXXXRNL 239
             + LEQ  S  +  KD K     LN    L +S +++L  +  ++              + 
Sbjct:   577 SQLEQ-QSEHNESKDEKLKSIELNLQQQL-QSKDSELSSKDEQLKCLESELSSVKEQLSS 634

Query:   240 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELAS 299
             +S +      +VK ++ SK  +L+++ +++    +++ +I S  + VK+  ++K QEL S
Sbjct:   635 QSSNTDSELSSVKDQLLSKDSELKSKDEQLSNKDSQIKSIESDLQSVKDQLSSKDQELQS 694

Query:   300 KAEEIVEKFQQYTN 313
               +++  K +Q +N
Sbjct:   695 TKDQLSSKDEQLSN 708

GO:0005615 "extracellular space" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000042966 AN2480 [Emericella nidulans (taxid:162425)]

 Score = 170 (64.9 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 70/298 (23%), Positives = 149/298 (50%)

Query:    32 SELEDKISQLNAEIAAYNEVRER-ELPLVQEVDAK--VKELRQTIQDLNKHQVSLRTTLN 88
             +ELE KI+ L  ++    +  ER +  L  E D K  ++ LR  + ++ +  V  +  + 
Sbjct:   569 AELEKKIADLEQQLREKEQAIERLDSRLKGEEDLKEEIESLRDDLLNIGQEHVEAKDKIK 628

Query:    89 KLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKK----SIREEAR 144
             +L  +  AL+   S+ E ++      NA   +   ++   L+   E  K    +I  E  
Sbjct:   629 ELVAEKAALEGTISKLEAEITDLRSNNAAKSADSEKAHNDLKDEYESLKVKFTTIETELS 688

Query:   145 DAEKLAMQSFQEKTTTLEVYQKT---LKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKAR 201
              A++LA   F++ T   E  QK    LKK+  +SA++++  +++ S K+ E   ++L+++
Sbjct:   689 AAQQLATTRFKDITDLRESIQKIQPELKKLRGESAELRSTKDELKS-KTAE--LRTLESK 745

Query:   202 LNDDVVLD-KSLEAKLIERQGKVXXXXXXXXXXXXXRNLKSEDATRAFENVKLEMESKRQ 260
              +DD+  + K+L+  + +R+ +V             R LK+E++    ++    +ES++Q
Sbjct:   746 -HDDLQAEVKALKTSISDRETEVKTLNQKIKQELDSR-LKAEESLTVAQSDLRYIESRKQ 803

Query:   261 D-LEARQKKVEAVVTEVDAI-TSKTKFVK-ESGAAKL-QELASKAEEIVEKFQQYTNS 314
             + +E +QK +  +    D + T++ +  + E   ++L +EL    +EI  K  Q++++
Sbjct:   804 EAIEGKQKVLSELSNVQDELKTARARLREYEQQTSQLNKELEGLRDEIQLKTAQHSSA 861

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0000042 "protein targeting to Golgi" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

ZFIN|ZDB-GENE-030131-6206 myhc4 "myosin heavy chain 4" [Danio rerio (taxid:7955)]

 Score = 170 (64.9 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 76/308 (24%), Positives = 143/308 (46%)

Query:    26 RLDEQRSELEDKISQLNAEIAAYNEVRERELP-LVQEVD------AKV-KELRQT---IQ 74
             +L E    LED+  ++NAE+ A     E E   L +++D      AKV KE   T   ++
Sbjct:   922 KLKETTERLEDE-EEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVK 980

Query:    75 DLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV---QSVQQNADLRSKIVQSPEKLQR 131
             +L +   S   ++ KL ++  AL E   QT  DL      V      ++K+ Q  + L+ 
Sbjct:   981 NLTEEMASQDESIAKLTKEKKALQEAHQQTLDDLQAEEDKVNTLTKSKTKLEQQVDDLEG 1040

Query:   132 TLEEKKSIR---EEA-RDAE---KLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQ 184
             +LE++K +R   E A R  E   KLA +S  +     +  ++ +KK   ++AQ+ + +E 
Sbjct:  1041 SLEQEKKLRMDLERAKRKLEGDLKLAQESIMDLENDKQQSEEKIKKKDFETAQLLSKIED 1100

Query:   185 VNS-AKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVXXXXXXXXXXXXXRNLKSED 243
               S    ++K  K L+AR+ +   L++ +EA+   R  KV              + + E+
Sbjct:  1101 EQSLGAQLQKKIKELQARIEE---LEEEIEAERAAR-AKVEKQRADLSRELEEISERLEE 1156

Query:   244 ATRAFENVKLEMESKRQ-DLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 302
             A  A    ++EM  KR+ + +  ++ +E    + +A  +  +  +    A+L E     +
Sbjct:  1157 AGGATA-AQIEMNKKREAEFQKLRRDLEESTLQHEATAAALRKKQADSVAELGEQIDNLQ 1215

Query:   303 EIVEKFQQ 310
              + +K ++
Sbjct:  1216 RVKQKLEK 1223

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TAIR|locus:2045412 AT2G32240 "AT2G32240" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 66/305 (21%), Positives = 140/305 (45%)

Query:     9 LRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKE 68
             L+ TK +  + + E +  L ++  EL +K+S+ N ++ A  +    EL  VQE  A  K 
Sbjct:   242 LKSTKESA-KEMEEKMASLQQEIKELNEKMSE-NEKVEAALKSSAGELAAVQEELALSKS 299

Query:    69 -LRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQ-QNADLRSKIVQSP 126
              L +T Q ++  +  +     +L++K  A + +F + E  ++Q +  Q   L++K+ +  
Sbjct:   300 RLLETEQKVSSTEALIDELTQELEQKK-ASESRFKE-ELSVLQDLDAQTKGLQAKLSEQE 357

Query:   127 ---EKLQRTLEEKKSIREEARDAE-KL--AMQSFQEKTTTLEVYQKTLKKMSKQSAQMQA 180
                 KL   L+EK+ +   ++D E KL  A +   E     E  +  + +++   A +  
Sbjct:   358 GINSKLAEELKEKELLESLSKDQEEKLRTANEKLAEVLKEKEALEANVAEVTSNVATVTE 417

Query:   181 ILEQVNSA-KSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVXXXXXXXXXXXXXRNL 239
             +  ++    K+ ++++    A L+  +  +  LE KL   + ++             +NL
Sbjct:   418 VCNELEEKLKTSDENFSKTDALLSQALSNNSELEQKLKSLE-ELHSEAGSAAAAATQKNL 476

Query:   240 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELAS 299
             + ED  R+      E +S+ ++LE +    E    E++   +  +        +L+EL+ 
Sbjct:   477 ELEDVVRSSSQAAEEAKSQIKELETKFTAAEQKNAELEQQLNLLQLKSSDAERELKELSE 536

Query:   300 KAEEI 304
             K+ E+
Sbjct:   537 KSSEL 541

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

ZFIN|ZDB-GENE-040426-1121 nuf2 "NUF2, NDC80 kinetochore complex component, homolog" [Danio rerio (taxid:7955)]

 Score = 162 (62.1 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 58/314 (18%), Positives = 141/314 (44%)

Query:    23 DLTRLDEQ--RSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLN--- 77
             ++T   +Q  R+++ D++     EI    +  E+   +  E  A+ KEL   + +L+   
Sbjct:   136 EITAAHQQSFRADM-DRLQAYTREIKEAEKKIEKLTTIPPEQQAEAKELASALAELSTNT 194

Query:    78 KHQVSLRTTLNK----LKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTL 133
             +H+    + +N+     K +   L +K +Q + ++     + + L+S+IV+SPE+L+  +
Sbjct:   195 QHEYQDVSAINEKVAQFKTEIAELSQKLTQRKVEVATLKDEISKLKSQIVESPEELKNEM 254

Query:   134 EEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEK 193
             E  +   +  + +++LA +   E    ++   +   ++     Q+Q +   ++  K  ++
Sbjct:   255 ERMRETAKNIKMSKELADERLVELQMLVQCASQVEAEIQILLKQLQDLQSSMSKTKQRKE 314

Query:   194 DYKSLKARLNDDVVLD-KSLEAKLIERQGKVXXXXXXXXXXXXXRNLKSEDATRAFENVK 252
             + +SL+  +N+ +  + KSL ++  + +  +             R  K E   +  +N+ 
Sbjct:   315 EVQSLEV-MNESLQKELKSLSSEEAQLKRALTMKLDKESKQQIRRQKKKEVKDQQVKNIY 373

Query:   253 LEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYT 312
              + +   Q  +   KK+E    E      K + ++E+   + Q+     E ++   +QY 
Sbjct:   374 GQYDKMHQKRQEIVKKIEECNRETKQFKEKMQALRENCNQRTQKAQEIYERLLTTLEQYH 433

Query:   313 NSIGTLLPVTEIES 326
               I  +L  T  ++
Sbjct:   434 KRIEKILVETNADA 447

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007507 "heart development" evidence=IMP

GO:0031262 "Ndc80 complex" evidence=ISS

GO:0005694 "chromosome" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

ZFIN|ZDB-GENE-010328-15 hip1 "huntingtin interacting protein 1" [Danio rerio (taxid:7955)]

 Score = 157 (60.3 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
 Identities = 58/257 (22%), Positives = 123/257 (47%)

Query:    17 LRPIAEDLT--RLDEQR--SELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQT 72
             L+ + E+L   RL+  R    L  ++++L AE+A    ++++ L   + + A++ +LR+ 
Sbjct:   385 LQALKEELESFRLESGRLCQALRGRVNELEAELAEQTHLKQQALGESEFLRAELDDLRRV 444

Query:    73 IQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL--- 129
              +D  K Q SL    ++++ K  A ++++++ +    + VQ +ADL  K  +   ++   
Sbjct:   445 KEDTEKEQRSL----SEIERKAQANEQRYTKLKEKYTELVQSHADLLRKNAEVTRQMTVA 500

Query:   130 QRTLEEKKSIREEARDAEKLAMQSF-QEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSA 188
             +   +E +++++E +D  K+A  S  Q++   LE  Q    ++     +++ +   V S+
Sbjct:   501 RAAQDEVENVKKEMQDRLKVAQDSASQQEKAQLEQLQALQAELMSSRTELETLKSTVTSS 560

Query:   189 K-SIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVXXXXXXXXXXXXXRNLKSEDATRA 247
             + S E+    L A + +   L +++  K +E  G               R      A  A
Sbjct:   561 QQSNEQLGTQLSALVAEKAGLVETVSRKEVELSGLGAELERLQSSLTNERE-SGVKAAEA 619

Query:   248 FENVKLEMESKRQDLEA 264
              +N   E ES+ Q LE+
Sbjct:   620 LQNQLNEKESREQALES 636

GO:0003779 "actin binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0009790 "embryo development" evidence=IMP

UNIPROTKB|F1SS62 MYH1 "Myosin-1" [Sus scrofa (taxid:9823)]

 Score = 167 (63.8 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 72/315 (22%), Positives = 142/315 (45%)

Query:    12 TKMNLLRPIAEDLTRLDEQR---SELEDKISQLNAEIAAYN-EVRERELPLVQEVDAKVK 67
             TK+ L   I E   R +++    +EL  K  +L  E +    ++ + EL L + V+ +  
Sbjct:   446 TKIQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAK-VEKEKH 504

Query:    68 ELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV---QSVQQNADLRSKIVQ 124
                  +++L +    L  T+ KL ++  AL E   QT  DL      V      ++K+ Q
Sbjct:   505 ATENKVKNLTEEMAGLDETIAKLTKEKKALQEAHQQTLDDLQAEEDKVNTLTKAKTKLEQ 564

Query:   125 SPEKLQRTLEEKKSIR---EEA-RDAE---KLAMQSFQEKTTTLEVYQKTLKKMSKQSAQ 177
               + L+ +LE++K +R   E A R  E   KLA +S  +     +   + LKK   + + 
Sbjct:   565 QVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESTMDIENDKQQLDEKLKKKEFEMSN 624

Query:   178 MQAILEQVNS-AKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVXXXXXXXXXXXXX 236
             +Q+ +E   + A  ++K  K L+AR+ +   L++ +EA+   R  K              
Sbjct:   625 LQSKIEDEQALAMQLQKKIKELQARIEE---LEEEIEAERASR-AKAEKQRSDLSRELEE 680

Query:   237 RNLKSEDATRAFENVKLEMESKRQ-DLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQ 295
              + + E+A  A  + ++EM  KR+ + +  ++ +E    + +A  +  +       A+L 
Sbjct:   681 ISERLEEAGGA-TSAQIEMNKKREAEFQKMRRDLEEATLQHEATAATLRKKHADSVAELG 739

Query:   296 ELASKAEEIVEKFQQ 310
             E     + + +K ++
Sbjct:   740 EQIDNLQRVKQKLEK 754

GO:0031672 "A band" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005859 "muscle myosin complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|F1SS66 MYH13 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 168 (64.2 bits), Expect = 5.1e-09, P = 5.1e-09
 Identities = 71/308 (23%), Positives = 148/308 (48%)

Query:    17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYN-EVRERELPLVQEVDAKVKELRQTIQD 75
             ++ + E L   +E  SEL  K   L  + ++   ++ + EL L + V+ +       +++
Sbjct:   925 VKELNERLEEEEEVNSELVAKKRNLEDKCSSLKRDIDDLELTLAK-VEKEKHATENKVKN 983

Query:    76 LNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDL-VQSVQQNA--DLRSKIVQSPEKLQRT 132
             L++   +L   L+KL ++  +L E   QT  DL V+  + N    +  K+ Q  + L+  
Sbjct:   984 LSEEMTALEGNLSKLTKEKKSLQEAHQQTLDDLQVEEDKVNGLIKINVKLEQQADDLEGC 1043

Query:   133 LEEKKSIREEARDAE-KLA--MQSFQEKTTTLE----VYQKTLKKMSKQSAQMQAIL--E 183
             LE++K +R +   A+ KL   ++  QE    LE      ++ LKK   + +Q+Q  +  E
Sbjct:  1044 LEQEKKLRADLERAKRKLEGDLKMCQESLVDLENDKQQAEEKLKKKEFEISQLQTKIDDE 1103

Query:   184 QVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVXXXXXXXXXXXXXRNLKSED 243
             QV+S + ++K  K L+AR  +   L++ +EA+   R GK+              + + E+
Sbjct:  1104 QVHSLQ-LQKKIKELQARTEE---LEEEVEAEHTLR-GKIEKQRADLARELEEISERLEE 1158

Query:   244 ATRAFENVKLEMESKRQ-DLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 302
             A+ A  + ++E+  KR+ + +  ++ +E    + +A  +  +       A+L E     +
Sbjct:  1159 ASGA-TSAQIELNKKREAEFQKLRRDLEEATLQHEATAAALRKKHADSVAELGEQIDNLQ 1217

Query:   303 EIVEKFQQ 310
              + +K ++
Sbjct:  1218 RVKQKLEK 1225

GO:0030016 "myofibril" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	327
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	2e-05
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	5e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	0.001
PLN02939	977	PLN02939, PLN02939, transferase, transferring glyc	0.003
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.003
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.004

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 55/288 (19%), Positives = 125/288 (43%), Gaps = 12/288 (4%)

Query: 33  ELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKE 92
           EL +++ +L  E+    E  E     +QE++ K++ELR  + +L +    L+  L  L  
Sbjct: 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295

Query: 93  KTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQ 152
           +   L+++       L    +Q  +L +++ +   KL    EE   + E+  + ++  ++
Sbjct: 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE-LE 354

Query: 153 SFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSL 212
           S + +   LE   + L+  S+     + +    +    +E    SL   +         L
Sbjct: 355 SLEAELEELEAELEELE--SRLEELEEQLETLRSKVAQLELQIASLNNEIE-------RL 405

Query: 213 EAKLIERQGKVEQLDELQQQLEKER-NLKSEDATRAFENVKLEMESKRQDLEARQKKVEA 271
           EA+L   + + E+L +  ++L K+    + ++     E ++ E+E  +++LE  ++ +E 
Sbjct: 406 EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEE 465

Query: 272 VVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLL 319
           +  E++         +   A     L S  E + E  + ++  +  LL
Sbjct: 466 LREELEEAEQALDAAERELAQLQARLDS-LERLQENLEGFSEGVKALL 512

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 53/291 (18%), Positives = 123/291 (42%), Gaps = 36/291 (12%)

Query: 26   RLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRT 85
            +L+E+ ++L  ++++L AEI    E  E     + E +A+++EL   I+ L +   +LR 
Sbjct: 744  QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE 803

Query: 86   TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ--------------------- 124
             L++L+ +   L+E+ +     L    ++ A    ++                       
Sbjct: 804  ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE 863

Query: 125  ---SPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAI 181
                 E+L+  LE   + R    +A  L     +E +  L   +    ++ ++  +++  
Sbjct: 864  LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923

Query: 182  LEQVNSAKS-IEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLK 240
            L Q+      +E    +L+ RL+++  L  +LE          +  +E +++L++  N  
Sbjct: 924  LAQLELRLEGLEVRIDNLQERLSEEYSL--TLEEAEALENKIEDDEEEARRRLKRLENKI 981

Query: 241  SE------DATRAFENVK---LEMESKRQDLEARQKKVEAVVTEVDAITSK 282
             E       A   +E +K     + ++++DL   ++ +E  + E+D    +
Sbjct: 982  KELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARE 1032

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 50/283 (17%), Positives = 128/283 (45%), Gaps = 18/283 (6%)

Query: 26  RLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRT 85
            L+E+  ELE+KI++L   +A   +  E       E++ ++++LR+ +++L++   +LR 
Sbjct: 681 ELEEKIEELEEKIAELEKALAELRKELE-------ELEEELEQLRKELEELSRQISALRK 733

Query: 86  TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARD 145
            L +L+ +   L+E+ +Q   +L +   +  +L  ++ ++ E+L     E + +  +   
Sbjct: 734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ 793

Query: 146 AEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDD 205
            ++  +++ +E    L      L          +         +S+E+   + + RL D 
Sbjct: 794 LKE-ELKALREALDELRAELTLLN---------EEAANLRERLESLERRIAATERRLEDL 843

Query: 206 VVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEAR 265
               + L   +     ++E+L+EL ++LE E      +     E +   + S+ ++L   
Sbjct: 844 EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA-LLRSELEELSEE 902

Query: 266 QKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF 308
            +++E+  +E+     + +        +L+ L  + + + E+ 
Sbjct: 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 51/261 (19%), Positives = 122/261 (46%), Gaps = 12/261 (4%)

Query: 20  IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH 79
           + E+L  L E+  E E +I +L +E+    E  E     + E+  +++EL   I  L + 
Sbjct: 251 LEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRER 310

Query: 80  QVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSI 139
              L   L +L+E+   L EK    +    + +++   L  ++ Q   +L+   EE +  
Sbjct: 311 LEELENELEELEERLEELKEKIEALK----EELEERETLLEELEQLLAELEEAKEELEEK 366

Query: 140 REEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAK-SIEKDYKSL 198
                +  +   ++ +E+   LE       ++++   +++ +  ++ S +  +E+  + L
Sbjct: 367 LSALLEELEELFEALREELAELE------AELAEIRNELEELKREIESLEERLERLSERL 420

Query: 199 KARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESK 258
           +    +   L+  LE    E +   E+L+EL++QLE+ R+ + ++  R    ++ E++  
Sbjct: 421 EDLKEELKELEAELEELQTELEELNEELEELEEQLEELRD-RLKELERELAELQEELQRL 479

Query: 259 RQDLEARQKKVEAVVTEVDAI 279
            ++L + + +++ +  E  A 
Sbjct: 480 EKELSSLEARLDRLEAEQRAS 500

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 51/262 (19%), Positives = 125/262 (47%), Gaps = 15/262 (5%)

Query: 20   IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH 79
            + E L  L+E+   LE+ +++L  EI    E R       Q +  +++EL + +++  + 
Sbjct: 756  LQERLEELEEELESLEEALAKLKEEIEELEEKR-------QALQEELEELEEELEEAERR 808

Query: 80   QVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSI 139
              +L   L  L+++   L+++  + E ++ +  ++  +L  ++    E+L++ LEE K  
Sbjct: 809  LDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEEL----EELEKELEELKEE 864

Query: 140  REEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQM-QAILEQVNSAKSIEKDYKSL 198
             EE    ++      +E     E  ++ L+++  + A++ + I +     + +E   + L
Sbjct: 865  LEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERL 924

Query: 199  KARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKER--NLKSEDATRAFENVKLEME 256
            +  L +     +    +         +++ L++++E     NL++ +     E    E++
Sbjct: 925  EVELPELEEELEEEY-EDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELK 983

Query: 257  SKRQDLEARQKKVEAVVTEVDA 278
            S+R+DLE  ++K+  V+ E+D 
Sbjct: 984  SQREDLEEAKEKLLEVIEELDK 1005

Length = 1163

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 64/320 (20%), Positives = 126/320 (39%), Gaps = 31/320 (9%)

Query: 20  IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH 79
           +      L+++  EL D++ +      A+NE  E       +++ + +ELR+   +L   
Sbjct: 312 VEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESE 371

Query: 80  QVSLRTTLNKLKEKTGALDE-------KFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRT 132
               R  +   +E+   L+E       +F     DL  +     +LR +  +  E+    
Sbjct: 372 LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAEL 431

Query: 133 LEEKKSIREEARDAEKLA-----------------MQSFQEKTTTLEVYQKTLKKMSKQS 175
               ++ RE   +AE L                  +++ +E    +E  +  L+ + ++ 
Sbjct: 432 EATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEV 491

Query: 176 AQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEK 235
            +++  LE+       E   + L+ R  D   L       + E++ + E+L E   +LE 
Sbjct: 492 EEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEA 551

Query: 236 ERNLKSEDATRAFENVK------LEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKES 289
           E   K E A  A E  +       E+ SK  +L+ R + +E + T + AI      + E 
Sbjct: 552 EAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEI-ER 610

Query: 290 GAAKLQELASKAEEIVEKFQ 309
              K + LA   +E  E+  
Sbjct: 611 LREKREALAELNDERRERLA 630

Length = 880

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 33/222 (14%), Positives = 75/222 (33%), Gaps = 11/222 (4%)

Query: 61  EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 120
           ++  ++  L + I++    +  L   L  L+ +  +L+ +  +T  DL +  +Q ADL +
Sbjct: 42  QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNA 101

Query: 121 KIVQSPEKL---QRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQ 177
           ++     +    +R L E+ +  + +      A+    E              ++   A+
Sbjct: 102 RLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAE 161

Query: 178 MQAILEQVNSA-----KSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLD---EL 229
               L+            I  +   L   L++       L   L ER+  + QL+     
Sbjct: 162 RIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSA 221

Query: 230 QQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEA 271
            Q+  +E             + +      R+   A +     
Sbjct: 222 DQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAAR 263

Length = 420

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 57/288 (19%), Positives = 145/288 (50%), Gaps = 7/288 (2%)

Query: 23  DLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVS 82
           +L  L+E+ +ELE ++ +L  E+ +          L++E+  +++EL + +++L +   +
Sbjct: 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAA 727

Query: 83  LRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREE 142
           L   L +L+ +   L+E+  + E +L +  ++  +L  ++    E L + L+E+    EE
Sbjct: 728 LEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAK-LKEEIEELEE 786

Query: 143 ARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARL 202
            R A +  ++  +E+    E     L++  +   Q +  LEQ    + +E++ + L+ +L
Sbjct: 787 KRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQ--EIEELEEEIEELEEKL 844

Query: 203 NDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDL 262
           ++     + LE +L E + ++E+L+  +++LE E     ++     E ++ E+     +L
Sbjct: 845 DELEEELEELEKELEELKEELEELEAEKEELEDE----LKELEEEKEELEEELRELESEL 900

Query: 263 EARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQ 310
              ++++E +   ++ + +K + ++       +EL  + E+ +E   +
Sbjct: 901 AELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELE 948

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 58/311 (18%), Positives = 139/311 (44%), Gaps = 24/311 (7%)

Query: 14  MNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLV-QEVDAKVKELRQT 72
              L    E+L RL++   ELE ++ +L          R+ E     QE+ A+++EL   
Sbjct: 178 ERKLERTEENLERLEDLLEELEKQLEKLE---------RQAEKAERYQELKAELRELELA 228

Query: 73  -----IQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPE 127
                +++L K    L   L++L+E+   L E+  + E ++ +   +  +LR ++ +  E
Sbjct: 229 LLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQE 288

Query: 128 KLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNS 187
           +L    EE + +  E     +   +   E     E  ++  +K+     +++     +  
Sbjct: 289 ELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEE 348

Query: 188 AKSIEKDYKS--------LKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNL 239
            + +  + +         L A L +   L ++L  +L E + ++ ++    ++L++E   
Sbjct: 349 LEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIES 408

Query: 240 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELAS 299
             E   R  E ++ +++ + ++LEA  ++++  + E++    + +   E    +L+EL  
Sbjct: 409 LEERLERLSERLE-DLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELER 467

Query: 300 KAEEIVEKFQQ 310
           +  E+ E+ Q+
Sbjct: 468 ELAELQEELQR 478

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 37/180 (20%), Positives = 81/180 (45%), Gaps = 6/180 (3%)

Query: 21  AEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQ 80
            E+L   +    ELE  +++L        E+ E+   L++E++   + LR+ + +L    
Sbjct: 336 KEELEERETLLEELEQLLAELEEAKE---ELEEKLSALLEELEELFEALREELAELEAEL 392

Query: 81  VSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQS---PEKLQRTLEEKK 137
             +R  L +LK +  +L+E+  +    L    ++  +L +++ +     E+L   LEE +
Sbjct: 393 AEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELE 452

Query: 138 SIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKS 197
              EE RD  K   +   E    L+  +K L  +  +  +++A        +++ +  +S
Sbjct: 453 EQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALES 512

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 62/311 (19%), Positives = 135/311 (43%), Gaps = 16/311 (5%)

Query: 8    NLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVK 67
             LR     L R + E    L     ELE   S+L        E+ E       E+  +++
Sbjct: 706  ELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELE----ELQERLE 761

Query: 68   ELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPE 127
            EL + ++ L +    L+  + +L+EK  AL E+  + E +L ++ ++   L  ++    +
Sbjct: 762  ELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQ 821

Query: 128  KLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNS 187
            + +R  +E + + EE  + E    +   E    LE  +K L+++ ++  +++A  E++  
Sbjct: 822  RRERLEQEIEELEEEIEELE----EKLDELEEELEELEKELEELKEELEELEAEKEELED 877

Query: 188  A-KSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATR 246
              K +E++ + L+  L +   L+  L     E +   E+L+EL+ +LE+      E    
Sbjct: 878  ELKELEEEKEELEEELRE---LESELAELKEEIEKLRERLEELEAKLERLEVELPELEEE 934

Query: 247  AFENVKLEM----ESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 302
              E  +  +    E + + LE   + +  V         + +   E   ++ ++L    E
Sbjct: 935  LEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKE 994

Query: 303  EIVEKFQQYTN 313
            +++E  ++   
Sbjct: 995  KLLEVIEELDK 1005

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 58/316 (18%), Positives = 130/316 (41%), Gaps = 31/316 (9%)

Query: 25  TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLR 84
                +   L +++  L  E+++      R    + E+  ++ +  + I ++ K    L 
Sbjct: 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729

Query: 85  TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEAR 144
               KLKE+   L+E  S  E       Q+  +++S++ +   +++   E+   + E   
Sbjct: 730 QEEEKLKERLEELEEDLSSLE-------QEIENVKSELKELEARIEELEEDLHKLEEALN 782

Query: 145 DAE-KLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKD--------- 194
           D E +L+     E    L   ++ + ++  +  +++  L ++   K   +          
Sbjct: 783 DLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR 842

Query: 195 ------YKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKER-NLKSE--DAT 245
                  KS++  + +     + LE +L E +  +  L+     L+KER  L+++  +  
Sbjct: 843 IDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE 902

Query: 246 RAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIV 305
           R  E ++ ++E KR+ L   + K+EA+  E+  I       +E    +L       E++ 
Sbjct: 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSL-----EDVQ 957

Query: 306 EKFQQYTNSIGTLLPV 321
            + Q+    I  L PV
Sbjct: 958 AELQRVEEEIRALEPV 973

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 34/208 (16%), Positives = 84/208 (40%), Gaps = 12/208 (5%)

Query: 107 DLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQK 166
           +L  +  +     ++   +  +LQ+  +E++++R+E   A +   ++ QE     +  Q 
Sbjct: 89  ELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQD 148

Query: 167 TLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQL 226
              ++   + Q + +  Q  S ++ +K  ++   +L    VLD  L +  IE++ +    
Sbjct: 149 LQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQL-KSQVLDLKLRSAQIEQEAQ---- 203

Query: 227 DELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV 286
             L  +    +    E A RA    +     +++D +  QK  +                
Sbjct: 204 -NLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRE------ 256

Query: 287 KESGAAKLQELASKAEEIVEKFQQYTNS 314
           +E    +L+   ++ E+ V + + Y  +
Sbjct: 257 RERQLQRLETAQARLEQEVAQLEAYYQA 284

Length = 499

>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 63/263 (23%), Positives = 109/263 (41%), Gaps = 38/263 (14%)

Query: 71  QTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQ 130
           Q ++DL K    + T    L+ K   L+ + S+T+  +  + Q+        V+  E+  
Sbjct: 153 QALEDLEK----ILTEKEALQGKINILEMRLSETDARIKLAAQEKIH-----VEILEEQL 203

Query: 131 RTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKK-MSKQSAQMQAILEQVNSAK 189
             L  +  IR      E L + S  ++   L+     LK  +    A++  + E      
Sbjct: 204 EKLRNELLIRGAT---EGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVF 260

Query: 190 SIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQ--LEKERNLKS--EDAT 245
            +EK+   L A L +       LE+K I  Q  V +L  LQ     EK  NL+   + AT
Sbjct: 261 KLEKERSLLDASLRE-------LESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRAT 313

Query: 246 RAFENVKLEMESKRQDLEARQKKVEAVVTE----------VDAITSKTKFVKESGAAKLQ 295
              E   L ++ + QDL  +  K+EA + E          V+ +  K K ++E   A   
Sbjct: 314 NQVEKAALVLD-QNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDH 372

Query: 296 ELASKA---EEIVEKFQQYTNSI 315
           E+ S     +E +++FQ   + +
Sbjct: 373 EIHSYIQLYQESIKEFQDTLSKL 395

Length = 977

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 51/266 (19%), Positives = 122/266 (45%), Gaps = 8/266 (3%)

Query: 26  RLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRT 85
            L E   E++ +I +L   I     + E     ++E + +++E+ + I +++     LR 
Sbjct: 166 NLGEVIKEIKRRIERLEKFIKRTENIEEL----IKEKEKELEEVLREINEISSELPELRE 221

Query: 86  TLNKL---KEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREE 142
            L KL    ++   L E+  + E +L         L  KI +  E+++   +E + + E+
Sbjct: 222 ELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK 281

Query: 143 ARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARL 202
            ++ ++L  +  +E     E Y++ L ++ +   ++  + E++N  +   K+ +  + RL
Sbjct: 282 VKELKELK-EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL 340

Query: 203 NDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDL 262
            +     K LE +L E + + E  +E + + E+   LK        E ++ E+E   +  
Sbjct: 341 EELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAK 400

Query: 263 EARQKKVEAVVTEVDAITSKTKFVKE 288
           E  ++++  +   +  +  + K +K+
Sbjct: 401 EEIEEEISKITARIGELKKEIKELKK 426

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 60/271 (22%), Positives = 121/271 (44%), Gaps = 11/271 (4%)

Query: 50  EVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ--TEFD 107
           E          E+  +++EL + +++L +  + L      LKE+     EK      E +
Sbjct: 487 EEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELE 546

Query: 108 LVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKT 167
            ++   Q   L+ ++ Q  ++LQ   E  + +R      E+L  +  +E+   L+   K 
Sbjct: 547 ELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEEL--EELRERLKELKKKLKE 604

Query: 168 LKKMSKQSA---QMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVE 224
           L++   Q     Q   + E  N  +  E++ +S   +LN    L++ L+A L E + KVE
Sbjct: 605 LEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVE 664

Query: 225 QLDELQQQLE--KERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSK 282
           +L+   ++     E   + E+     E ++ E+E  R++LE   KK+  +   ++ + S+
Sbjct: 665 ELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESR 724

Query: 283 TKFVKES--GAAKLQELASKAEEIVEKFQQY 311
              ++E      KL++     EE+ EK  + 
Sbjct: 725 KAELEELKKELEKLEKALELLEELREKLGKA 755

Length = 908

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	327
KOG4438	446	consensus Centromere-associated protein NUF2 [Cell	100.0
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.99
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.93
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.83
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.77
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.68
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.67
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.63
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.63
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.62
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.58
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.48
PRK03918	880	chromosome segregation protein; Provisional	98.48
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.43
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.42
PRK03918	880	chromosome segregation protein; Provisional	98.37
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.36
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.32
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.31
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	98.3
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.27
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.26
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.23
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.17
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.1
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	98.08
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.04
PRK01156	895	chromosome segregation protein; Provisional	98.04
PHA02562	562	46 endonuclease subunit; Provisional	98.03
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.01
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	97.97
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.95
PRK11637	428	AmiB activator; Provisional	97.84
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.83
PRK01156	895	chromosome segregation protein; Provisional	97.79
PRK04778	569	septation ring formation regulator EzrA; Provision	97.75
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.67
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.57
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.5
PHA02562	562	46 endonuclease subunit; Provisional	97.49
PRK04778	569	septation ring formation regulator EzrA; Provision	97.49
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.4
KOG0964	1200	consensus Structural maintenance of chromosome pro	97.4
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.37
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.24
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.18
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.13
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.12
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.04
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.04
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.97
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	96.96
PRK04863	1486	mukB cell division protein MukB; Provisional	96.95
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.87
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.85
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.84
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.8
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.79
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.67
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.67
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	96.59
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.59
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	96.59
KOG0018	1141	consensus Structural maintenance of chromosome pro	96.46
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.39
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.33
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.32
KOG0971	1243	consensus Microtubule-associated protein dynactin	96.28
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.25
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.22
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.22
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	96.18
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	96.12
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.07
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.01
COG5185	622	HEC1 Protein involved in chromosome segregation, i	95.91
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	95.78
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.65
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	95.62
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	95.6
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	95.58
PRK04863	1486	mukB cell division protein MukB; Provisional	95.54
KOG0971	1243	consensus Microtubule-associated protein dynactin	95.48
PRK09039	343	hypothetical protein; Validated	95.47
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	95.38
KOG0963	629	consensus Transcription factor/CCAAT displacement	95.31
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.26
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	95.24
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	95.22
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	95.2
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	95.1
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	95.07
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	95.06
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	95.03
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	95.02
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	94.99
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	94.95
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.89
COG5185	622	HEC1 Protein involved in chromosome segregation, i	94.82
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	94.8
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.8
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	94.79
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	94.76
KOG0018	1141	consensus Structural maintenance of chromosome pro	94.58
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	94.46
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	94.42
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	94.36
KOG1003	205	consensus Actin filament-coating protein tropomyos	94.26
COG4477	570	EzrA Negative regulator of septation ring formatio	94.19
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	94.18
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.17
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	94.16
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.99
PRK15422	79	septal ring assembly protein ZapB; Provisional	93.92
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	93.89
PRK09039	343	hypothetical protein; Validated	93.85
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	93.81
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	93.76
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	93.75
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	93.49
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	93.45
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.4
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	93.32
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	93.23
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	93.16
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	93.09
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	93.02
COG4372	499	Uncharacterized protein conserved in bacteria with	92.87
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	92.72
KOG0963	629	consensus Transcription factor/CCAAT displacement	92.67
KOG4673	961	consensus Transcription factor TMF, TATA element m	92.65
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	92.47
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	92.4
KOG0979	1072	consensus Structural maintenance of chromosome pro	92.39
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	92.34
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	92.33
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	92.31
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	92.3
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	92.16
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	92.13
COG4372	499	Uncharacterized protein conserved in bacteria with	92.11
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	91.77
COG4942	420	Membrane-bound metallopeptidase [Cell division and	91.71
PRK10884	206	SH3 domain-containing protein; Provisional	91.01
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	90.98
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.71
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	90.63
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	90.61
PRK15422	79	septal ring assembly protein ZapB; Provisional	90.29
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	90.26
KOG1003	205	consensus Actin filament-coating protein tropomyos	90.17
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	89.58
COG4026	290	Uncharacterized protein containing TOPRIM domain,	89.38
PRK10884	206	SH3 domain-containing protein; Provisional	89.29
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	89.1
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	88.72
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	88.67
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	88.09
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	88.07
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	87.94
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	87.93
PRK10869	553	recombination and repair protein; Provisional	87.63
KOG4673	961	consensus Transcription factor TMF, TATA element m	87.59
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	87.56
PRK11281	1113	hypothetical protein; Provisional	87.2
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	87.0
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	86.71
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	86.68
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	86.6
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	86.14
KOG2991	330	consensus Splicing regulator [RNA processing and m	85.83
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	85.8
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	85.79
KOG1962	216	consensus B-cell receptor-associated protein and r	84.97
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	84.7
PLN02939	977	transferase, transferring glycosyl groups	84.7
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	84.37
PRK09343	121	prefoldin subunit beta; Provisional	83.45
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	83.4
COG2433	652	Uncharacterized conserved protein [Function unknow	82.99
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	82.94
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	82.93
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	82.34
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	82.12
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	82.07
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	81.97
KOG4438	446	consensus Centromere-associated protein NUF2 [Cell	80.3
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	80.25

>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.2e-29  Score=229.96  Aligned_cols=318  Identities=19%  Similarity=0.242  Sum_probs=259.6

Q ss_pred             cccchhhhhhhchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020385            2 LLFPFLNLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQV   81 (327)
Q Consensus         2 a~INf~~Free~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~   81 (327)
                      |||||++|||+||++|+++..+.+++.+.+.++.+.+.++..++..+......++++++++...+.+|.+.+......|.
T Consensus       118 avvNfa~fRe~k~~~~~~~~~q~eslle~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~  197 (446)
T KOG4438|consen  118 AVVNFALFREEKMDLYRPFIQQLESLLELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQM  197 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           82 SLRTTLNKLKEKTGA-LDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTT  160 (327)
Q Consensus        82 ~l~~~~~~lk~~~~~-l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~  160 (327)
                      .+..++..++..... ..+.++.+.+.+.++.+....|+++||+||++|++.|++|+....+.++.-..+..+...+..+
T Consensus       198 ~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ek  277 (446)
T KOG4438|consen  198 SLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEK  277 (446)
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            999999999988888 6677888888888899888889999999999999999999995555555555555666999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHhhchhhhhhHHHHHHHHHHHhHHHHHH-HHHHHHHHH
Q 020385          161 LEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYK---SLKARLNDDVVLDKSLEAKLIERQGKVEQLD-ELQQQLEKE  236 (327)
Q Consensus       161 ~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~---~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~-~~l~~~~e~  236 (327)
                      ++.++.++.|+..|.+.+++...+..+.+.....++   .+.+.+.-...+.. .-.-...|..++..+. +.....+..
T Consensus       278 v~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e~~~~e~~-~lk~~e~~~kqL~~~~kek~~~~Qd~  356 (446)
T KOG4438|consen  278 VTNLQTIEKELKALLKKISSDGVEYDSLETKVVELKEILELEDQIELNQLELE-KLKMFENLTKQLNELKKEKESRRQDL  356 (446)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999977777766333332   33333322111111 1111234444444433 444444444


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 020385          237 RNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITS--KTKFVKESGAAKLQELASKAEEIVEKFQQYTNS  314 (327)
Q Consensus       237 ~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~--~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~  314 (327)
                      .++-.+...+.++........+++..+....++.+...++..++.  ++...+..++..+.+|..+|..|..||+.|+.+
T Consensus       357 ~~r~~E~v~~~md~~~~~~n~V~~kr~a~~~kie~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk~HV~~y~AE  436 (446)
T KOG4438|consen  357 ENRKTESVKAMMDDNIEKYNVVRQKRNAKVKKIEEKNEEIKKIELFLEIARGREELESQIVAITLECILLKMHVELYEAE  436 (446)
T ss_pred             HHhhHHHHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555566777777777777778888888888888888888  999999999999999999999999999999999


Q ss_pred             Hhcccc
Q 020385          315 IGTLLP  320 (327)
Q Consensus       315 l~~~~~  320 (327)
                      |...|-
T Consensus       437 l~~~m~  442 (446)
T KOG4438|consen  437 LKRIMI  442 (446)
T ss_pred             HHHHHH
Confidence            986654

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.99  E-value=1.5e-05  Score=86.41  Aligned_cols=17  Identities=12%  Similarity=0.307  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 020385          295 QELASKAEEIVEKFQQY  311 (327)
Q Consensus       295 ~~~~~~~~~L~~~~~~Y  311 (327)
                      ..+......|..+++.|
T Consensus       968 ~~l~~~i~~lg~aiee~  984 (1179)
T TIGR02168       968 EEARRRLKRLENKIKEL  984 (1179)
T ss_pred             HHHHHHHHHHHHHHHHc
Confidence            34444444444444444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.93  E-value=3.2e-05  Score=83.83  Aligned_cols=8  Identities=0%  Similarity=0.135  Sum_probs=3.1

Q ss_pred             HhHhcccc
Q 020385          313 NSIGTLLP  320 (327)
Q Consensus       313 ~~l~~~~~  320 (327)
                      ..|++.|+
T Consensus       975 ~~lg~aie  982 (1179)
T TIGR02168       975 KRLENKIK  982 (1179)
T ss_pred             HHHHHHHH
Confidence            33333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR00606 rad50 rad50

Probab=98.83  E-value=0.00017  Score=79.36  Aligned_cols=228  Identities=10%  Similarity=0.149  Sum_probs=112.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHH
Q 020385           56 LPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEE  135 (327)
Q Consensus        56 e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~  135 (327)
                      ......++..+..|+..+..+......+...+    ..+..|...|..+...+..+..++..+...+..-...+......
T Consensus       849 ~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l----~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~  924 (1311)
T TIGR00606       849 RKLIQDQQEQIQHLKSKTNELKSEKLQIGTNL----QRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQE  924 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            33444444444444444444444444443322    14455555555566666666666666655555544444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhH
Q 020385          136 KKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSA-----QMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDK  210 (327)
Q Consensus       136 l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~-----~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k  210 (327)
                      +...+.............+..+...+..+..+..+|..+..     .+..+...+..+..   .+..++.++...+..+.
T Consensus       925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~---~ie~le~e~~~l~~~i~ 1001 (1311)
T TIGR00606       925 KEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNA---QLEECEKHQEKINEDMR 1001 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            44433333333333334446677777777777777766554     35555555544432   44444444444333333


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHH---------HHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          211 SLEAKLIERQGKVEQLDELQQQL---------EKERNLKSEDA-TRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAIT  280 (327)
Q Consensus       211 ~l~~~~~e~~~~~~~l~~~l~~~---------~e~~~~~~~~~-~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le  280 (327)
                      .+...+..+......+...+..+         ...+..+..+. ......+..+...+..+++........+.+++..++
T Consensus      1002 ~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le 1081 (1311)
T TIGR00606      1002 LMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYE 1081 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444443333         22222222110 112244566666666666666666666666667777


Q ss_pred             HHHHHHHHhh
Q 020385          281 SKTKFVKESG  290 (327)
Q Consensus       281 ~~i~~~~~~~  290 (327)
                      ..|..++...
T Consensus      1082 ~qi~~l~~eL 1091 (1311)
T TIGR00606      1082 KEIKHFKKEL 1091 (1311)
T ss_pred             HHHHHHHHHH
Confidence            7776666665

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.77  E-value=0.00027  Score=78.25  Aligned_cols=83  Identities=18%  Similarity=0.314  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020385          176 AQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEM  255 (327)
Q Consensus       176 ~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~  255 (327)
                      ....++...+.+...   ++..+..++++.+..+..++..+.+++.++..+.+.++.-...+..+..    ...++..++
T Consensus      1062 ~~~~el~~~l~kke~---El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek----~r~dL~~el 1134 (1930)
T KOG0161|consen 1062 KQKEELDNQLKKKES---ELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAER----QRRDLSEEL 1134 (1930)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence            344444444444444   4444555555544444447777777777777777776655554444444    666677777


Q ss_pred             HHHHHHHHHH
Q 020385          256 ESKRQDLEAR  265 (327)
Q Consensus       256 ~~~~~el~~~  265 (327)
                      +.+..++...
T Consensus      1135 e~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1135 EELKEELEEQ 1144 (1930)
T ss_pred             HHHHHHHHHH
Confidence            7777666664

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.68  E-value=0.00031  Score=65.29  Aligned_cols=109  Identities=22%  Similarity=0.325  Sum_probs=83.1

Q ss_pred             hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRE-RELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT   94 (327)
Q Consensus        16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~-~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~   94 (327)
                      .+..|........+++..|..+|..|+.+|..++.... ...+.-.-+..++..+...|.........+..++..+....
T Consensus         5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~   84 (312)
T PF00038_consen    5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEEL   84 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHH
Confidence            46788899999999999999999999999999999843 23335566777888888888888888888888888888888


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhchhhhhc
Q 020385           95 GALDEKFSQTEFDLVQSVQQNADLRSKIVQ  124 (327)
Q Consensus        95 ~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~  124 (327)
                      ..+..+++........+..++..|++.+..
T Consensus        85 ~~~r~k~e~e~~~~~~le~el~~lrk~ld~  114 (312)
T PF00038_consen   85 EDLRRKYEEELAERKDLEEELESLRKDLDE  114 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            888888888888888888888887755543

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.67  E-value=0.00053  Score=74.59  Aligned_cols=99  Identities=21%  Similarity=0.399  Sum_probs=43.9

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           20 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE   99 (327)
Q Consensus        20 l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~   99 (327)
                      +..+...+......+......+...+..+...+.........+...+..+...+..+......+..++..+..+...+..
T Consensus       672 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  751 (1163)
T COG1196         672 LEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEE  751 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444433333444444444444444444444444444444444444444444


Q ss_pred             HHhhhHHHHHHHHHHHHhc
Q 020385          100 KFSQTEFDLVQSVQQNADL  118 (327)
Q Consensus       100 ~l~~~~~~i~~~~~e~~~L  118 (327)
                      .+..+...+..+...+..+
T Consensus       752 ~~~~~~~~~~~~~~~l~~~  770 (1163)
T COG1196         752 ELEELQERLEELEEELESL  770 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.63  E-value=0.00091  Score=72.79  Aligned_cols=110  Identities=19%  Similarity=0.306  Sum_probs=57.0

Q ss_pred             hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA   96 (327)
Q Consensus        17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~   96 (327)
                      +..+..........+..+...+..+...+.+++.........+..+..++..+...+..+......+...+..+......
T Consensus       676 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  755 (1163)
T COG1196         676 LAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEE  755 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555555555555555555555555544444555555555555555555555555555555555555555


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhchhhhhcCH
Q 020385           97 LDEKFSQTEFDLVQSVQQNADLRSKIVQSP  126 (327)
Q Consensus        97 l~~~l~~~~~~i~~~~~e~~~L~s~iv~sp  126 (327)
                      +..++..+...+..+......|..++....
T Consensus       756 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~  785 (1163)
T COG1196         756 LQERLEELEEELESLEEALAKLKEEIEELE  785 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555554444444

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.63  E-value=0.00012  Score=65.42  Aligned_cols=108  Identities=17%  Similarity=0.226  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhh
Q 020385           43 AEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI  122 (327)
Q Consensus        43 ~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~i  122 (327)
                      .++.........-...+...........+.+..+++....+..++............+|..+.........-...|.++.
T Consensus         8 ~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~   87 (237)
T PF00261_consen    8 DELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENRE   87 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            33333333333333344444555555556666666666666666666666677777777777777777666666666666


Q ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          123 VQSPEKLQRTLEEKKSIREEARDAEKLA  150 (327)
Q Consensus       123 v~spe~lk~~le~l~~~~~~l~~~e~~~  150 (327)
                      ..+.+++...=..++.....+...+.++
T Consensus        88 ~~~eeri~~lE~~l~ea~~~~ee~e~k~  115 (237)
T PF00261_consen   88 QSDEERIEELEQQLKEAKRRAEEAERKY  115 (237)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6665554333333333333333343333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.62  E-value=0.002  Score=71.68  Aligned_cols=70  Identities=13%  Similarity=0.234  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 020385          247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKF----------VKESGAAKLQELASKAEEIVEKFQQYTNSIG  316 (327)
Q Consensus       247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~----------~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~  316 (327)
                      .+..+..+++.-+..+...++.+.++..++..+...+..          +....+.++..+...+..=..+...++..|-
T Consensus      1105 ~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr 1184 (1930)
T KOG0161|consen 1105 RIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELR 1184 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            444444444444444444555555544444444444443          2333445555555555555555555554443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.58  E-value=0.00079  Score=70.15  Aligned_cols=245  Identities=20%  Similarity=0.248  Sum_probs=162.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHH---HHHHHHH
Q 020385           59 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEK---LQRTLEE  135 (327)
Q Consensus        59 ~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~---lk~~le~  135 (327)
                      ..++....+.+......+......+..++..+.....++...++.+...|.++....    .+.+.+.++   ++..|++
T Consensus       794 ~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~----~k~~~d~~~l~~~~~~ie~  869 (1293)
T KOG0996|consen  794 ARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAV----LKKVVDKKRLKELEEQIEE  869 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhccCcHHHHHHHHHHHHH
Confidence            444444555555555555555555555555556666666666666666666555552    222333333   4556777


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHH
Q 020385          136 KKSIREEARDAEKLAM-QSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEA  214 (327)
Q Consensus       136 l~~~~~~l~~~e~~~~-~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~  214 (327)
                      ++...+.+.  +..+- +....+++.++.+...  .+......+..+...+..+..   ++..+...+...++.+..++.
T Consensus       870 l~kE~e~~q--e~~~Kk~~i~~lq~~i~~i~~e--~~q~qk~kv~~~~~~~~~l~~---~i~k~~~~i~~s~~~i~k~q~  942 (1293)
T KOG0996|consen  870 LKKEVEELQ--EKAAKKARIKELQNKIDEIGGE--KVQAQKDKVEKINEQLDKLEA---DIAKLTVAIKTSDRNIAKAQK  942 (1293)
T ss_pred             HHHHHHHHH--HhhhHHHHHHHHHHHHHHhhch--hhHHhHHHHHHHHHHHHHHHH---HHHHhHHHHhcCcccHHHHHH
Confidence            777555443  22221 2336667766666543  233334466666677766666   777777778888888888888


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhH
Q 020385          215 KLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKE---SGA  291 (327)
Q Consensus       215 ~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~---~~e  291 (327)
                      .+.++...+......+..+.+.......    +...++.++.+...-+..+...+..+...+..+...++.++.   .++
T Consensus       943 ~l~~le~~~~~~e~e~~~L~e~~~~~~~----k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~ 1018 (1293)
T KOG0996|consen  943 KLSELEREIEDTEKELDDLTEELKGLEE----KAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIE 1018 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence            8888888888888888888777776666    666677777777777777777777777777777777777665   578


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcc
Q 020385          292 AKLQELASKAEEIVEKFQQYTNSIGTL  318 (327)
Q Consensus       292 ~e~~~~~~~~~~L~~~~~~Y~~~l~~~  318 (327)
                      ..+.++..++..+.+.+..|...+.+.
T Consensus      1019 ~K~e~~~~~l~e~~~~~~~~~k~~~~l 1045 (1293)
T KOG0996|consen 1019 NKLEAINGELNEIESKIKQPEKELKKL 1045 (1293)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHhhCcc
Confidence            888899999999999999998776654

>TIGR00606 rad50 rad50

Probab=98.48  E-value=0.0044  Score=68.36  Aligned_cols=20  Identities=5%  Similarity=-0.021  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 020385           31 RSELEDKISQLNAEIAAYNE   50 (327)
Q Consensus        31 ~~~l~~~~~~l~~~i~~~k~   50 (327)
                      ...+..........++.+..
T Consensus       711 ~~~~~~~~~~~~~~~e~l~~  730 (1311)
T TIGR00606       711 LKSTESELKKKEKRRDEMLG  730 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03918 chromosome segregation protein; Provisional

Probab=98.48  E-value=0.0033  Score=66.61  Aligned_cols=17  Identities=29%  Similarity=0.395  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 020385           29 EQRSELEDKISQLNAEI   45 (327)
Q Consensus        29 ~~~~~l~~~~~~l~~~i   45 (327)
                      .....+...+..+...+
T Consensus       169 ~~~~~~~~~~~~l~~~l  185 (880)
T PRK03918        169 EVIKEIKRRIERLEKFI  185 (880)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333444444443333

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.43  E-value=0.0023  Score=62.80  Aligned_cols=33  Identities=18%  Similarity=0.284  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385           86 TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL  118 (327)
Q Consensus        86 ~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L  118 (327)
                      ....++.+...|..+.+.....|..+..++..|
T Consensus       200 ~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l  232 (546)
T PF07888_consen  200 SSEELKEERESLKEQLAEARQRIRELEEDIKTL  232 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444444444444444433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.42  E-value=0.0037  Score=64.36  Aligned_cols=171  Identities=12%  Similarity=0.117  Sum_probs=101.8

Q ss_pred             HHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           98 DEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQ  177 (327)
Q Consensus        98 ~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~  177 (327)
                      ..++..+...+..+..++..|++.+..++.........+..-+.....+..+++...-++...-.-+..+..++......
T Consensus       237 d~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~  316 (775)
T PF10174_consen  237 DTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQ  316 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34555555555667999999999998887765555455555333333344444444455555555555555666666666


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020385          178 MQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMES  257 (327)
Q Consensus       178 l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~  257 (327)
                      -.+...-+..++.   .+.+.+.+..-       |+..+..+..++..-...+..+..-+..+..    ....+..++..
T Consensus       317 ~~d~r~hi~~lke---sl~~ke~~~~~-------Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qe----E~~~~~~Ei~~  382 (775)
T PF10174_consen  317 DSDMRQHIEVLKE---SLRAKEQEAEM-------LQSDVEALRFRLEEKNSQLEKKQAQIEKLQE----EKSRLQGEIED  382 (775)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            6666555655555   55555555555       6666666666666666666655555555555    55556666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          258 KRQDLEARQKKVEAVVTEVDAITSK  282 (327)
Q Consensus       258 ~~~el~~~~~~~~~~~~ei~~le~~  282 (327)
                      ++..++..++++..++..|+.++..
T Consensus       383 l~d~~d~~e~ki~~Lq~kie~Lee~  407 (775)
T PF10174_consen  383 LRDMLDKKERKINVLQKKIENLEEQ  407 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666655555555444433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK03918 chromosome segregation protein; Provisional

Probab=98.37  E-value=0.0059  Score=64.69  Aligned_cols=35  Identities=17%  Similarity=0.363  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAITS  281 (327)
Q Consensus       247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~  281 (327)
                      .+..+...+.++...+......++.....+..++.
T Consensus       667 ~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~  701 (880)
T PRK03918        667 EYLELSRELAGLRAELEELEKRREEIKKTLEKLKE  701 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444433333333

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.36  E-value=0.0017  Score=57.93  Aligned_cols=76  Identities=13%  Similarity=0.190  Sum_probs=37.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 020385          212 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA  291 (327)
Q Consensus       212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e  291 (327)
                      +..++.++...+..+...+..+......+..    +...+...+..+...+...+...+..-..+..++..|+.+.....
T Consensus       139 ~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~----re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~  214 (237)
T PF00261_consen  139 AESKIKELEEELKSVGNNLKSLEASEEKASE----REDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE  214 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hchhHHHHHHHHHHHHHHHHHhhhhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444443444333333333333    445555555555555555555555555556666666655544433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.32  E-value=0.0062  Score=62.71  Aligned_cols=97  Identities=20%  Similarity=0.255  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 020385           27 LDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEF  106 (327)
Q Consensus        27 l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~  106 (327)
                      +.+.+.....+...|+..++.++..+......+...++.+..+......+.....-+...++....+...|..+|+++..
T Consensus       327 lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee  406 (775)
T PF10174_consen  327 LKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEE  406 (775)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344444444444444333334444444444444444444444333444444444444444444444444


Q ss_pred             HHHHHHHHHHhchhhhh
Q 020385          107 DLVQSVQQNADLRSKIV  123 (327)
Q Consensus       107 ~i~~~~~e~~~L~s~iv  123 (327)
                      .+..=......++.++.
T Consensus       407 ~l~ekd~ql~~~k~Rl~  423 (775)
T PF10174_consen  407 QLREKDRQLDEEKERLS  423 (775)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            44333333333333333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.31  E-value=0.0045  Score=60.78  Aligned_cols=94  Identities=20%  Similarity=0.308  Sum_probs=45.5

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           22 EDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF  101 (327)
Q Consensus        22 ~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l  101 (327)
                      .+.+........|...+..|+.+...++......+..+.....++..|......+...-..+..+...++.....+..+|
T Consensus       143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri  222 (546)
T PF07888_consen  143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRI  222 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444445554444444444444444444444455544444444444445555555555555555555


Q ss_pred             hhhHHHHHHHHHHH
Q 020385          102 SQTEFDLVQSVQQN  115 (327)
Q Consensus       102 ~~~~~~i~~~~~e~  115 (327)
                      ..+...+..+.+..
T Consensus       223 ~~LEedi~~l~qk~  236 (546)
T PF07888_consen  223 RELEEDIKTLTQKE  236 (546)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555444444333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=98.30  E-value=0.0025  Score=57.58  Aligned_cols=79  Identities=23%  Similarity=0.363  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHH
Q 020385           59 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKS  138 (327)
Q Consensus        59 ~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~  138 (327)
                      ..++.+.+.++...+..+......+..++..|+.+...+...+..+-..+..+...+.... ....||..+.+.|..+..
T Consensus        43 Rdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~-~~~~~~~~ler~i~~Le~  121 (294)
T COG1340          43 RDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN-LGGRSIKSLEREIERLEK  121 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCCHHHHHHHHHHHHH
Confidence            3445555555666666666666666666666666666666666664444444444444333 445677778888887655

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.27  E-value=0.014  Score=64.42  Aligned_cols=245  Identities=18%  Similarity=0.179  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           75 DLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSF  154 (327)
Q Consensus        75 ~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~  154 (327)
                      .+......++..-..+-..+..|..-++.....|..+..++..|..++..+...+.....-+.........++-+..-..
T Consensus       105 ~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~  184 (1822)
T KOG4674|consen  105 ALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLE  184 (1822)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444555555566666666666666666666666666665533222222221111111111111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHH
Q 020385          155 QEKTTTLEVYQKTLKKMSKQSAQMQAILEQ----VNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQ  230 (327)
Q Consensus       155 ~~l~~~~e~~~~~e~el~~~~~~l~~~~~e----l~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l  230 (327)
                      ++...+.....-+..++......+..+..+    ...++.   .+.++...+..-+-.++.|..+..++..+++.+...+
T Consensus       185 QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~---~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~l  261 (1822)
T KOG4674|consen  185 QEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEE---KLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLEL  261 (1822)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222222233333333333333222    222222   2222222222222222224445555555555444444


Q ss_pred             HHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 020385          231 QQLEKERNLKSED--------------ATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQE  296 (327)
Q Consensus       231 ~~~~e~~~~~~~~--------------~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~  296 (327)
                      ..+.+.......+              |..+..++...+.++...+.....-+++.-..+......+..++.........
T Consensus       262 s~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~  341 (1822)
T KOG4674|consen  262 SKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEK  341 (1822)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            4444433333333              33344445555555555566666666666666666777777788888888888


Q ss_pred             HHHHHHHHHHHHHHHHHhHhcccccc
Q 020385          297 LASKAEEIVEKFQQYTNSIGTLLPVT  322 (327)
Q Consensus       297 ~~~~~~~L~~~~~~Y~~~l~~~~~~~  322 (327)
                      ...++.+|.+.+..-.+++...++.-
T Consensus       342 ~~k~~~~le~~l~~an~~~~~~~~~~  367 (1822)
T KOG4674|consen  342 LEKKVSRLEGELEDANDSLSATGESS  367 (1822)
T ss_pred             HHHHHHHHHHHHHhhhhhHHhhcccc
Confidence            88999999988888887776654443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.26  E-value=0.0012  Score=64.57  Aligned_cols=248  Identities=16%  Similarity=0.263  Sum_probs=122.0

Q ss_pred             hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTG   95 (327)
Q Consensus        16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~   95 (327)
                      ++++.......+...+..+..++..+...+.+...........+......+.+++.++..++.....+..+...++.+..
T Consensus       100 ~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~  179 (546)
T KOG0977|consen  100 LLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENS  179 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444445555555555666666666666655544444444455555555566666666666666666666666666666


Q ss_pred             HHHHHHhhh-------------------------HHHHHHHHHHHHhchhhhhcCHH---------HHHHHHHHHHHHHH
Q 020385           96 ALDEKFSQT-------------------------EFDLVQSVQQNADLRSKIVQSPE---------KLQRTLEEKKSIRE  141 (327)
Q Consensus        96 ~l~~~l~~~-------------------------~~~i~~~~~e~~~L~s~iv~spe---------~lk~~le~l~~~~~  141 (327)
                      +|...|..+                         .|......++|..++.+...+|.         +|...|.++...  
T Consensus       180 rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaq--  257 (546)
T KOG0977|consen  180 RLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQ--  257 (546)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHH--
Confidence            655555443                         34555555677777777776661         144444444431  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHh
Q 020385          142 EARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQG  221 (327)
Q Consensus       142 ~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~  221 (327)
                          ++.-+    .....-++.  -+..+|..............+...+   ++...+..+.+       |..++.+++.
T Consensus       258 ----ye~~~----~~nR~diE~--~Y~~kI~~i~~~~~~~~~~~~~~rE---El~~~R~~i~~-------Lr~klselE~  317 (546)
T KOG0977|consen  258 ----YEAIS----RQNRKDIES--WYKRKIQEIRTSAERANVEQNYARE---ELRRIRSRISG-------LRAKLSELES  317 (546)
T ss_pred             ----HHHHH----HHhHHHHHH--HHHHHHHHHHhhhccccchhHHHHH---HHHHHHhcccc-------hhhhhccccc
Confidence                11111    111111111  1112222222211111122222333   44444444444       4444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          222 KVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKF  285 (327)
Q Consensus       222 ~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~  285 (327)
                      .-.-+...+..+.-....-..-....+.....++..++++|...--+++.+.+---.|..+|.-
T Consensus       318 ~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~  381 (546)
T KOG0977|consen  318 RNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAA  381 (546)
T ss_pred             cChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHH
Confidence            4333333333333322222222233677777788888888888888877777544455555544

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.23  E-value=0.011  Score=61.86  Aligned_cols=38  Identities=24%  Similarity=0.228  Sum_probs=21.4

Q ss_pred             hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020385           16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRE   53 (327)
Q Consensus        16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~   53 (327)
                      .|..+....+.....+......+..+..+|.+.+..+.
T Consensus       215 ~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~  252 (1074)
T KOG0250|consen  215 SYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLD  252 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            34444445555555555666666666666666655543

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.17  E-value=0.021  Score=62.97  Aligned_cols=119  Identities=17%  Similarity=0.235  Sum_probs=62.5

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           20 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE   99 (327)
Q Consensus        20 l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~   99 (327)
                      +-.+.+.+..+...+...|..-...+..+...+..-...+..+..++..|+++-.-+......|..++..|-.+..++..
T Consensus       701 ~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~  780 (1822)
T KOG4674|consen  701 TKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQL  780 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333334444333333333333334443444556666666666666666666666666777666666666666


Q ss_pred             HHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHH
Q 020385          100 KFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKS  138 (327)
Q Consensus       100 ~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~  138 (327)
                      -+.++.+........-...+.+..+-...|...+..++.
T Consensus       781 ~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~  819 (1822)
T KOG4674|consen  781 LLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKK  819 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666655555555444444333334444444333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.10  E-value=0.02  Score=59.90  Aligned_cols=93  Identities=19%  Similarity=0.326  Sum_probs=40.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 020385          213 EAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAA  292 (327)
Q Consensus       213 ~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~  292 (327)
                      ..++.+.+.++..|...++.++.-...+..    ++..+...+....++...+...+..++..+.-....|..++..-..
T Consensus       393 ~~~~~e~e~k~~~L~~evek~e~~~~~L~~----e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~d  468 (1074)
T KOG0250|consen  393 GSELEERENKLEQLKKEVEKLEEQINSLRE----ELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTD  468 (1074)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            333444444444444444444333333333    4444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 020385          293 KLQELASKAEEIVEKFQ  309 (327)
Q Consensus       293 e~~~~~~~~~~L~~~~~  309 (327)
                      .+...=.-...|..+|+
T Consensus       469 kvs~FG~~m~~lL~~I~  485 (1074)
T KOG0250|consen  469 KVSAFGPNMPQLLRAIE  485 (1074)
T ss_pred             hhhhcchhhHHHHHHHH
Confidence            44444444444444443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.08  E-value=0.013  Score=57.16  Aligned_cols=65  Identities=12%  Similarity=0.274  Sum_probs=28.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhh
Q 020385           58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI  122 (327)
Q Consensus        58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~i  122 (327)
                      ..+.+.+....|+..++.|..-...+...-..+......+..+++.....+..+..+++.|+.+|
T Consensus       260 ~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I  324 (581)
T KOG0995|consen  260 KEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI  324 (581)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444443333333333334444444444444444444555555554444

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.04  E-value=0.011  Score=54.79  Aligned_cols=245  Identities=20%  Similarity=0.258  Sum_probs=145.1

Q ss_pred             hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTG   95 (327)
Q Consensus        16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~   95 (327)
                      ....+..+...+...++.+..+...+..++..+......-.+.+....+.+..++..+..+.+.........-.+.....
T Consensus        48 ~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~  127 (312)
T PF00038_consen   48 IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQ  127 (312)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH
Confidence            44556666666666777777777777777776666666555666666666666666666666666555555566666666


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           96 ALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEK---------LQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQK  166 (327)
Q Consensus        96 ~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~---------lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~  166 (327)
                      .|.++|.   |....+.+++..|++++..+|..         |...|.++..      .++..+    .....  +.-..
T Consensus       128 ~L~eEl~---fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~------~ye~~~----~~~~~--e~e~~  192 (312)
T PF00038_consen  128 SLKEELE---FLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRA------QYEEIA----QKNRE--ELEEW  192 (312)
T ss_dssp             HHHHHHH---HHHHHHHHHHHTTSTT----------------HHHHHHHHHH------HHHHHH----HHHHH--HHHHH
T ss_pred             HHHHHHH---HHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHH------HHHHHH----hhhhh--hhhhh
Confidence            6665554   55566778888898888422211         3333333222      222222    22222  22223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 020385          167 TLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATR  246 (327)
Q Consensus       167 ~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~  246 (327)
                      +...+..+..........+...+.   ++..++..++.       |..++..+..+...+...+..+......-......
T Consensus       193 y~~k~~~l~~~~~~~~~~~~~~~~---E~~~~r~~~~~-------l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~  262 (312)
T PF00038_consen  193 YQSKLEELRQQSEKSSEELESAKE---ELKELRRQIQS-------LQAELESLRAKNASLERQLRELEQRLDEEREEYQA  262 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccchhHh---HHHHHHhhhhH-------hhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence            334455555555555555555555   66666666666       66667777777777777777666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKF  285 (327)
Q Consensus       247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~  285 (327)
                      .+..++.++..++.++...-+.+..+.+---.+..+|+.
T Consensus       263 ~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIat  301 (312)
T PF00038_consen  263 EIAELEEELAELREEMARQLREYQELLDVKLALDAEIAT  301 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            777777777777777777776666666544455555544

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK01156 chromosome segregation protein; Provisional

Probab=98.04  E-value=0.03  Score=59.62  Aligned_cols=15  Identities=13%  Similarity=0.251  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHHHH
Q 020385           36 DKISQLNAEIAAYNE   50 (327)
Q Consensus        36 ~~~~~l~~~i~~~k~   50 (327)
                      .++..+...+..+..
T Consensus       197 ~eL~~~~~~i~el~~  211 (895)
T PRK01156        197 LELENIKKQIADDEK  211 (895)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.03  E-value=0.02  Score=57.55  Aligned_cols=63  Identities=11%  Similarity=0.150  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 020385           85 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAE  147 (327)
Q Consensus        85 ~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e  147 (327)
                      ..+..++.+...+..+...+...+..+..++..+...+..-++.|+..-..+......+..++
T Consensus       213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~  275 (562)
T PHA02562        213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQ  275 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666666666666666666666666655443333334333333333333333333

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.01  E-value=0.03  Score=58.85  Aligned_cols=191  Identities=18%  Similarity=0.243  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhch---hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           80 QVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR---SKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQE  156 (327)
Q Consensus        80 q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~---s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~  156 (327)
                      ...+..++..+......+.+.+..+...+..+..+++..+   +-+...|+.....+..+......|.......   .+.
T Consensus       386 ~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~---~~~  462 (1293)
T KOG0996|consen  386 FESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKE---ERE  462 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHH---HHH
Confidence            3333334444444444444444444444444443333332   2234567776666666666433333332222   122


Q ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHH
Q 020385          157 KTTTLEVYQ----KTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQ  232 (327)
Q Consensus       157 l~~~~e~~~----~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~  232 (327)
                      +.....+|.    .+..++....+.|..+...++....   ++.-.+.+|..       |.........++..+...+..
T Consensus       463 l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~---e~~vaesel~~-------L~~~~~~~~~~~e~lk~~L~~  532 (1293)
T KOG0996|consen  463 LDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARS---ELDVAESELDI-------LLSRHETGLKKVEELKGKLLA  532 (1293)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            222222222    2223333344444444444443333   33333333333       555555555556666555555


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          233 LEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVK  287 (327)
Q Consensus       233 ~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~  287 (327)
                      ..........    .+..++..+..+..++......+...+.+...+.+....+.
T Consensus       533 ~~~~~~e~~~----~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~r  583 (1293)
T KOG0996|consen  533 SSESLKEKKT----ELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLR  583 (1293)
T ss_pred             HHHHHHHHHH----HHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            5554444444    44555555555555555555555544444444444433333

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=97.97  E-value=0.012  Score=53.00  Aligned_cols=269  Identities=16%  Similarity=0.219  Sum_probs=144.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhchh----hHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020385           33 ELEDKISQLNAEIAAYNEVRERELP----LVQEVDAKVKELRQTIQ----DLNKHQVSLRTTLNKLKEKTGALDEKFSQT  104 (327)
Q Consensus        33 ~l~~~~~~l~~~i~~~k~~~~~~e~----~~~~l~~~~~eL~~~i~----~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~  104 (327)
                      .|+++|+-|..+|..++....+.++    .+.-+...+.+|...|.    .+.+..-.....+..|+++.+.|..+|+.-
T Consensus         3 ~Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~E   82 (305)
T PF14915_consen    3 MLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKE   82 (305)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHh
Confidence            3677888888888888887666665    44445555666655444    233333334444555555555555555555


Q ss_pred             HHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Q 020385          105 EFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSA-------Q  177 (327)
Q Consensus       105 ~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~-------~  177 (327)
                      +..-..+..+++..       ..+|-.+|.+...-...-..++......+.+.....+.+   .-+|+.+..       +
T Consensus        83 Kq~kerLEtEiES~-------rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkm---n~d~S~lkd~ne~LsQq  152 (305)
T PF14915_consen   83 KQNKERLETEIESY-------RSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKM---NSDVSNLKDNNEILSQQ  152 (305)
T ss_pred             HHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHh---cchHHhHHHHhHHHHHH
Confidence            54444444444444       445555666555422222222222211122233332222   224433333       4


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHH
Q 020385          178 MQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDA---TRAFENVKLE  254 (327)
Q Consensus       178 l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~---~~k~~~~~~e  254 (327)
                      |...+..++.++.   ++-...+.|.+....+..++..+...+.++..++.-+.+-+.+...+....   ..++..++++
T Consensus       153 LskaesK~nsLe~---elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsE  229 (305)
T PF14915_consen  153 LSKAESKFNSLEI---ELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSE  229 (305)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444   444445556666666666788888888888888777777666666666522   2355556666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHH-------HHHHHHHHHHHHHHHHHHHHh
Q 020385          255 MESKRQDLEARQKKVEAVVTEVDAITSKTKF----VKESGAAK-------LQELASKAEEIVEKFQQYTNS  314 (327)
Q Consensus       255 ~~~~~~el~~~~~~~~~~~~ei~~le~~i~~----~~~~~e~e-------~~~~~~~~~~L~~~~~~Y~~~  314 (327)
                      ---++++++....+.+.+-.-|..+......    +....++.       -..+..+|.-|...+-.|-.+
T Consensus       230 N~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyEkE  300 (305)
T PF14915_consen  230 NMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYEKE  300 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666665555544444444443322    33333332       234677788888887777543

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.95  E-value=0.025  Score=55.69  Aligned_cols=48  Identities=25%  Similarity=0.305  Sum_probs=41.2

Q ss_pred             hhhhhchh---hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020385            8 NLRDTKMN---LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERE   55 (327)
Q Consensus         8 ~Free~~~---~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~   55 (327)
                      -||+.|..   .+..|...+....++++.|.++|..|+.+|..++......
T Consensus        32 ~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~   82 (546)
T KOG0977|consen   32 PIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRE   82 (546)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            45666644   6888999999999999999999999999999999977665

>PRK11637 AmiB activator; Provisional

Probab=97.84  E-value=0.032  Score=54.21  Aligned_cols=25  Identities=8%  Similarity=0.166  Sum_probs=10.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           26 RLDEQRSELEDKISQLNAEIAAYNE   50 (327)
Q Consensus        26 ~l~~~~~~l~~~~~~l~~~i~~~k~   50 (327)
                      .+..++.++..++..++.++.....
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~   68 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQ   68 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444443333

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.83  E-value=0.023  Score=51.52  Aligned_cols=68  Identities=19%  Similarity=0.250  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHhchhhhhcCH
Q 020385           59 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS---QTEFDLVQSVQQNADLRSKIVQSP  126 (327)
Q Consensus        59 ~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~---~~~~~i~~~~~e~~~L~s~iv~sp  126 (327)
                      ++++.....++-.++..|.....-+...+..+-.....+.....   .....+..+..++.+|.-.+.++|
T Consensus        57 ~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~  127 (294)
T COG1340          57 AQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSV  127 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcC
Confidence            33333333334444444444444444444444444444444444   344455667777777766655544

>PRK01156 chromosome segregation protein; Provisional

Probab=97.79  E-value=0.077  Score=56.51  Aligned_cols=9  Identities=22%  Similarity=0.405  Sum_probs=3.9

Q ss_pred             chhhhHHHH
Q 020385           13 KMNLLRPIA   21 (327)
Q Consensus        13 ~~~~~~~l~   21 (327)
                      |..+++.+.
T Consensus       151 r~~~ld~~~  159 (895)
T PRK01156        151 RKKILDEIL  159 (895)
T ss_pred             HHHHHHHHh
Confidence            444444443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.75  E-value=0.062  Score=54.18  Aligned_cols=62  Identities=10%  Similarity=0.120  Sum_probs=34.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhch
Q 020385           58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR  119 (327)
Q Consensus        58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~  119 (327)
                      .+......+..+...|..+-.....-.............+.+.+..+......+..++++|+
T Consensus       276 ~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~  337 (569)
T PRK04778        276 DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVK  337 (569)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555555554555555555555666666666666666666666664

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.67  E-value=0.084  Score=53.52  Aligned_cols=45  Identities=7%  Similarity=0.042  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          140 REEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQ  184 (327)
Q Consensus       140 ~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~e  184 (327)
                      +.+.....+.+..-...++...+.+.-+.+....+..+..+++.-
T Consensus       220 ~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~s  264 (1265)
T KOG0976|consen  220 LHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQAS  264 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHH
Confidence            333334444444444455555555555555555444444444333

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.57  E-value=0.14  Score=53.33  Aligned_cols=31  Identities=16%  Similarity=0.236  Sum_probs=13.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH
Q 020385          212 LEAKLIERQGKVEQLDELQQQLEKERNLKSE  242 (327)
Q Consensus       212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~  242 (327)
                      |..++..+...+......+..++.++.....
T Consensus       848 l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~  878 (1174)
T KOG0933|consen  848 LKSELGNLEAKVDKVEKDVKKAQAELKDQKA  878 (1174)
T ss_pred             HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence            4444444444444444444444444433333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.50  E-value=0.062  Score=47.60  Aligned_cols=90  Identities=11%  Similarity=0.154  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          107 DLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVN  186 (327)
Q Consensus       107 ~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~  186 (327)
                      .|..+..+.++|.+.+..-|..|+....++......+...+..+    ..   .-..+..++.+|......+...+..+ 
T Consensus        11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~----e~---le~qv~~~e~ei~~~r~r~~~~e~kl-   82 (239)
T COG1579          11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIEL----ED---LENQVSQLESEIQEIRERIKRAEEKL-   82 (239)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            45577778888888888777777766666555444444444333    22   22334455556666666666665555 


Q ss_pred             HHhhHHHHHHHHHHhhch
Q 020385          187 SAKSIEKDYKSLKARLND  204 (327)
Q Consensus       187 ~~~~~~~~~~~l~~~l~~  204 (327)
                      ..-...+.+.+|..+++.
T Consensus        83 ~~v~~~~e~~aL~~E~~~  100 (239)
T COG1579          83 SAVKDERELRALNIEIQI  100 (239)
T ss_pred             hccccHHHHHHHHHHHHH
Confidence            222224445555444444

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.49  E-value=0.14  Score=51.45  Aligned_cols=26  Identities=19%  Similarity=0.332  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020385           28 DEQRSELEDKISQLNAEIAAYNEVRE   53 (327)
Q Consensus        28 ~~~~~~l~~~~~~l~~~i~~~k~~~~   53 (327)
                      .+.++.+..++..+..++..+.....
T Consensus       173 k~~~~e~~~~i~~l~~~i~~l~~~i~  198 (562)
T PHA02562        173 KDKIRELNQQIQTLDMKIDHIQQQIK  198 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555555555555443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.49  E-value=0.15  Score=51.53  Aligned_cols=59  Identities=12%  Similarity=0.101  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 020385          140 REEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKAR  201 (327)
Q Consensus       140 ~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~  201 (327)
                      ...+.......+..+..+..-+.....+++....+...+..+......+..   ++..+...
T Consensus       281 ~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~---Ei~~l~~s  339 (569)
T PRK04778        281 EEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKE---EIDRVKQS  339 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHc
Confidence            445555555555555555555555666666666666666665555555554   44444433

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.40  E-value=0.16  Score=49.94  Aligned_cols=140  Identities=13%  Similarity=0.178  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020385          177 QMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEME  256 (327)
Q Consensus       177 ~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~  256 (327)
                      .+.++..++.....   +...+++.++.....+..+...+..+..++..+........+........++..++.+..++.
T Consensus       426 l~~ei~~~~~~~~~---~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~  502 (581)
T KOG0995|consen  426 LLDEISEELHEAEN---ELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELL  502 (581)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777777766666   777777777775555444555555666666666555555555555555555444444444443


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhcccccc
Q 020385          257 SKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVT  322 (327)
Q Consensus       257 ~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~~~~~~~  322 (327)
                      ...--+   ...+...-..++.++-+.+.+..+++.++.++......+...|=..|-.|...|+..
T Consensus       503 ~l~l~~---~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~iqs~le~~  565 (581)
T KOG0995|consen  503 NLKLVL---NTSMKEAEELVKSIELELDRMVATGEEERQKIAKQLFAVIDQISDFKVSIQSSLENL  565 (581)
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332222   223333336677888888888888888888887777777777766666666666544

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.40  E-value=0.22  Score=51.70  Aligned_cols=93  Identities=16%  Similarity=0.233  Sum_probs=58.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHH
Q 020385           58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKK  137 (327)
Q Consensus        58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~  137 (327)
                      .+.....+...+...|.+++..-..|..+...++.+.+.+..+...+...+..+.++|+.=...-......++.....+.
T Consensus       259 ~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~  338 (1200)
T KOG0964|consen  259 ALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIE  338 (1200)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence            55666777777777888888888888888888888888888877777777777777776543332222222333333333


Q ss_pred             HHHHHHHHHHHHH
Q 020385          138 SIREEARDAEKLA  150 (327)
Q Consensus       138 ~~~~~l~~~e~~~  150 (327)
                      ....+++..++++
T Consensus       339 e~~~EL~~I~Pky  351 (1200)
T KOG0964|consen  339 EKKDELSKIEPKY  351 (1200)
T ss_pred             HHHHHHHHhhhHH
Confidence            3444444444444

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.37  E-value=0.35  Score=53.22  Aligned_cols=76  Identities=14%  Similarity=0.238  Sum_probs=60.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHH
Q 020385           58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTL  133 (327)
Q Consensus        58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~l  133 (327)
                      .+......+................+...+..+..........+......+..+...+..|...+...|+.|-..|
T Consensus       470 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL  545 (1201)
T PF12128_consen  470 QLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFL  545 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHH
Confidence            4555666666667777777777888888888888888888889999999999999999999999988887755443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.24  E-value=0.35  Score=50.50  Aligned_cols=87  Identities=14%  Similarity=0.135  Sum_probs=35.3

Q ss_pred             hHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          104 TEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILE  183 (327)
Q Consensus       104 ~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~  183 (327)
                      -...+..+..++..++.++..+...+++...+......++..++.......+.+......+..+..++..+...+..+..
T Consensus       785 re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~  864 (1174)
T KOG0933|consen  785 RERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEK  864 (1174)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            33344444444444544444444444444444433333333333333222233333333333344444444444444444


Q ss_pred             HHHHHhh
Q 020385          184 QVNSAKS  190 (327)
Q Consensus       184 el~~~~~  190 (327)
                      ++.+...
T Consensus       865 ~~~~~~~  871 (1174)
T KOG0933|consen  865 DVKKAQA  871 (1174)
T ss_pred             HHHHHHH
Confidence            4433333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.18  E-value=0.3  Score=48.71  Aligned_cols=66  Identities=20%  Similarity=0.258  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHH
Q 020385          155 QEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKV  223 (327)
Q Consensus       155 ~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~  223 (327)
                      .++...-..+..+..++..+...+..+..++.+.+.   ++..++.........+-+|..++......+
T Consensus       288 ~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~---el~~lke~e~~a~~~v~~L~~eL~~~r~eL  353 (522)
T PF05701_consen  288 KELEEAKKELEKAKEEASSLRASVESLRSELEKEKE---ELERLKEREKEASSEVSSLEAELNKTRSEL  353 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence            344444444455555555555555555555555554   444444444443333333443333333333

Several sequences in this family are described as being myosin heavy chain-like.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.13  E-value=0.41  Score=49.25  Aligned_cols=37  Identities=14%  Similarity=0.075  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          139 IREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQS  175 (327)
Q Consensus       139 ~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~  175 (327)
                      .+.....+|.++...+.++...-+....++.++..+.
T Consensus       543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr  579 (697)
T PF09726_consen  543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELR  579 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555666666666666666666666666664333

; GO: 0016021 integral to membrane

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.12  E-value=0.35  Score=48.31  Aligned_cols=75  Identities=15%  Similarity=0.205  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 020385          162 EVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNL  239 (327)
Q Consensus       162 e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~  239 (327)
                      ..+..+..+|......|+.+..++..+..   .+..|+.+|..-...+..+..........+..|...+.....++..
T Consensus       281 ~~l~s~~~ELe~ak~~L~~~k~E~~~L~~---~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea  355 (522)
T PF05701_consen  281 SSLASAKKELEEAKKELEKAKEEASSLRA---SVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEA  355 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Confidence            33556666666666666666666666665   5566666665544444445555555555555555555555544433

Several sequences in this family are described as being myosin heavy chain-like.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.04  E-value=0.74  Score=50.71  Aligned_cols=102  Identities=20%  Similarity=0.316  Sum_probs=49.0

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 020385           19 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT-GAL   97 (327)
Q Consensus        19 ~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~-~~l   97 (327)
                      .+..+.+.+...+.........++..+..+......-...+.............+..++.....+..++...+... ..+
T Consensus       604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  683 (1201)
T PF12128_consen  604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQI  683 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444455555554444444444444444444555555555555555555555544433322 344


Q ss_pred             HHHHhhhHHHHHHHHHHHHhchh
Q 020385           98 DEKFSQTEFDLVQSVQQNADLRS  120 (327)
Q Consensus        98 ~~~l~~~~~~i~~~~~e~~~L~s  120 (327)
                      ...+..+...+..+.+++..+..
T Consensus       684 ~~~l~~l~~~l~~~~~e~~~~~~  706 (1201)
T PF12128_consen  684 EEQLNELEEELKQLKQELEELLE  706 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555433

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.04  E-value=0.44  Score=48.09  Aligned_cols=13  Identities=23%  Similarity=0.373  Sum_probs=5.4

Q ss_pred             HhchhhhhcCHHH
Q 020385          116 ADLRSKIVQSPEK  128 (327)
Q Consensus       116 ~~L~s~iv~spe~  128 (327)
                      .+|...+..+..+
T Consensus       397 ~kL~~~v~~s~~r  409 (594)
T PF05667_consen  397 AKLQALVEASEQR  409 (594)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.97  E-value=0.24  Score=43.88  Aligned_cols=46  Identities=11%  Similarity=0.229  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 020385          254 EMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELAS  299 (327)
Q Consensus       254 e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~  299 (327)
                      ++..+...+...+..+..+...+..++..+...+..++.++..+..
T Consensus       111 el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e  156 (239)
T COG1579         111 ELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE  156 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333344444444433333

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=96.96  E-value=0.28  Score=44.48  Aligned_cols=52  Identities=15%  Similarity=0.248  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 020385           65 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNA  116 (327)
Q Consensus        65 ~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~  116 (327)
                      .+-.+..+++.|...=..|...+..=|..+.+|-.+++.....+..+-.+.+
T Consensus        57 Ti~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~d  108 (305)
T PF14915_consen   57 TIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHD  108 (305)
T ss_pred             HHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            3333444444444444445555555555555666666655555555554443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.95  E-value=0.97  Score=50.49  Aligned_cols=63  Identities=5%  Similarity=0.043  Sum_probs=39.3

Q ss_pred             chhhhhhhchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 020385            5 PFLNLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQ   71 (327)
Q Consensus         5 Nf~~Free~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~   71 (327)
                      -|++-.++|+..+++...    ...++......+...+..+..+...+.+..+.+..+..+......
T Consensus       273 d~~r~~eERR~liEEAag----~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~k  335 (1486)
T PRK04863        273 DYMRHANERRVHLEEALE----LRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASD  335 (1486)
T ss_pred             HHhhCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            477888888888887732    335555666666666666666666655555555555555554433

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.87  E-value=0.62  Score=46.97  Aligned_cols=85  Identities=18%  Similarity=0.276  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----------------HHHHHHHHHHHH
Q 020385          240 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA----------------AKLQELASKAEE  303 (327)
Q Consensus       240 ~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e----------------~e~~~~~~~~~~  303 (327)
                      +.......+..+...++...-.+..+.+.+.....-+..+...+.++.....                .+++.....-..
T Consensus       445 ~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYaNRYR~~~~~v~~al~~Ae~  524 (560)
T PF06160_consen  445 YFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLIQYANRYRSDNPEVDEALTEAED  524 (560)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHH
Confidence            3333344555566666666666666776666666666666666666555443                455555555555


Q ss_pred             HHHHHHHHHHhHh---cccccccc
Q 020385          304 IVEKFQQYTNSIG---TLLPVTEI  324 (327)
Q Consensus       304 L~~~~~~Y~~~l~---~~~~~~~~  324 (327)
                      +..+-..|...|.   .+|+.++.
T Consensus       525 ~F~~~~~Y~~ALe~i~~alE~veP  548 (560)
T PF06160_consen  525 LFRNEYDYEKALETIATALEKVEP  548 (560)
T ss_pred             HHHhhCCHHHHHHHHHHHHHHhCC
Confidence            5555445555544   45555544

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=96.85  E-value=0.00026  Score=74.25  Aligned_cols=68  Identities=22%  Similarity=0.343  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          212 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKT  283 (327)
Q Consensus       212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i  283 (327)
                      |...+.+|..+...+...+.....+...+..    .+-.+...++.....+....+....+.+++..+.+..
T Consensus       382 fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~t----e~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~  449 (859)
T PF01576_consen  382 FDKQLAEWKAKVEELQAERDAAQREARELET----ELFKLKNELEELQEQLEELERENKQLQDELEDLTSQL  449 (859)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence            6666667776666666666666666555555    5556666666666666666655555555555444443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=96.84  E-value=0.00027  Score=74.16  Aligned_cols=67  Identities=19%  Similarity=0.201  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 020385          251 VKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGT  317 (327)
Q Consensus       251 ~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~~  317 (327)
                      ++.++.++...+...+..+...-..+-.++..+..++..|+..+..=..++..++.....=+.+|..
T Consensus       466 LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~  532 (859)
T PF01576_consen  466 LEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEA  532 (859)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHh
Confidence            3344444444444444444444444445555555555555555555555555554444443334333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.80  E-value=0.8  Score=47.22  Aligned_cols=103  Identities=12%  Similarity=0.194  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 020385          174 QSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIE-------RQGKVEQLDELQQQLEKERNLKSEDATR  246 (327)
Q Consensus       174 ~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e-------~~~~~~~l~~~l~~~~e~~~~~~~~~~~  246 (327)
                      |.....+++.++.++..   +++..++.+..       ++.+..+       -....+.|-.-|..++++...+...+..
T Consensus       543 ~r~r~~~lE~E~~~lr~---elk~kee~~~~-------~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsa  612 (697)
T PF09726_consen  543 CRQRRRQLESELKKLRR---ELKQKEEQIRE-------LESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSA  612 (697)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            44455555555555555   55555555544       3333322       2233444555566666666666553221


Q ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          247 A---FENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV  286 (327)
Q Consensus       247 k---~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~  286 (327)
                      +   --+|=+.+...+.+++..+..+-..-.+|..++.+|..+
T Consensus       613 EtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~  655 (697)
T PF09726_consen  613 ETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL  655 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1   112333444445555555544444445555555555443

; GO: 0016021 integral to membrane

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.79  E-value=0.77  Score=46.99  Aligned_cols=34  Identities=18%  Similarity=0.113  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchh
Q 020385           87 LNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS  120 (327)
Q Consensus        87 ~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s  120 (327)
                      ...++-+...+..++.+.......+..+.+-|+.
T Consensus       680 ~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~  713 (970)
T KOG0946|consen  680 EKELQVENEELEEEVQDFISEHSQLKDQLDLLKN  713 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.67  E-value=0.96  Score=46.49  Aligned_cols=100  Identities=14%  Similarity=0.192  Sum_probs=40.1

Q ss_pred             cccchhhhhhhchhhhHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 020385            2 LLFPFLNLRDTKMNLLRPIAEDLTRLDEQRSELE--DKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH   79 (327)
Q Consensus         2 a~INf~~Free~~~~~~~l~~~~e~l~~~~~~l~--~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~   79 (327)
                      ++.+|+.|==+++..+..-....+.+..-+..+-  +-+..|...+..+...... ......+...+.+++..+..+...
T Consensus       146 ~~~~~FfFDGE~I~~la~~~~~~~~l~~Ai~~LlGl~~~~~L~~dl~~~~~~~~~-~~~~~~~~~~~~~le~el~~l~~~  224 (650)
T TIGR03185       146 ELADLFFFDGEKIEALANPDRLASLLKEAIEVLLGLDLIDRLAGDLTNVLRRRKK-SELPSSILSEIEALEAELKEQSEK  224 (650)
T ss_pred             hHHHHhcccHHHHHHHhccccchHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHH
Confidence            3556666766665443321111111222222111  1144455555554333221 222333444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 020385           80 QVSLRTTLNKLKEKTGALDEKFS  102 (327)
Q Consensus        80 q~~l~~~~~~lk~~~~~l~~~l~  102 (327)
                      ...+..++..+......+..++.
T Consensus       225 ~e~l~~~i~~l~~ele~a~~~l~  247 (650)
T TIGR03185       225 YEDLAQEIAHLRNELEEAQRSLE  247 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444433333333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.67  E-value=0.36  Score=41.58  Aligned_cols=102  Identities=22%  Similarity=0.329  Sum_probs=79.2

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           22 EDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF  101 (327)
Q Consensus        22 ~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l  101 (327)
                      .++..+...+..+...+..+..+..-++.-....+..+........+|=+-|...++....|...+..++.....+...+
T Consensus        12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl   91 (194)
T PF15619_consen   12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL   91 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555566666666666666666666666778888888888888899999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhchhhhh
Q 020385          102 SQTEFDLVQSVQQNADLRSKIV  123 (327)
Q Consensus       102 ~~~~~~i~~~~~e~~~L~s~iv  123 (327)
                      ......+..+...+..|...+.
T Consensus        92 k~~~~el~k~~~~l~~L~~L~~  113 (194)
T PF15619_consen   92 KDKDEELLKTKDELKHLKKLSE  113 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888888888765443

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=96.59  E-value=1.1  Score=45.98  Aligned_cols=60  Identities=22%  Similarity=0.241  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 020385          248 FENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF  308 (327)
Q Consensus       248 ~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~  308 (327)
                      ..+.+.++.++.....+++.+++...+.+-.++.--. -.++.-.|+..+......|..|.
T Consensus       374 k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~-dhe~~kneL~~a~ekld~mgthl  433 (1265)
T KOG0976|consen  374 KENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKK-DHEAAKNELQEALEKLDLMGTHL  433 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc-hhHHHHHHHHHHHHHHHHHhHHH
Confidence            3344444444444444455444444433332222111 11223344555555555555443

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.59  E-value=1.2  Score=46.58  Aligned_cols=53  Identities=17%  Similarity=0.176  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 020385          247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELAS  299 (327)
Q Consensus       247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~  299 (327)
                      ++..+-.++-++.++++.....+..++.+-..+.+.|.++++....--+.+..
T Consensus       447 r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~  499 (1200)
T KOG0964|consen  447 RMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRA  499 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666667777777777777777777777888888777776655444443

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=96.59  E-value=1.2  Score=46.64  Aligned_cols=31  Identities=19%  Similarity=0.165  Sum_probs=17.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH
Q 020385          212 LEAKLIERQGKVEQLDELQQQLEKERNLKSE  242 (327)
Q Consensus       212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~  242 (327)
                      +...+.++..++..+...+.+...+...+..
T Consensus       479 ~~~et~el~~~iknlnk~L~~r~~elsrl~a  509 (1195)
T KOG4643|consen  479 LEAETEELLNQIKNLNKSLNNRDLELSRLHA  509 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555666666666555555555555544

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.46  E-value=1.5  Score=46.27  Aligned_cols=27  Identities=19%  Similarity=0.364  Sum_probs=13.1

Q ss_pred             HHHHHhhhHHHHHHHHHHHHhchhhhh
Q 020385           97 LDEKFSQTEFDLVQSVQQNADLRSKIV  123 (327)
Q Consensus        97 l~~~l~~~~~~i~~~~~e~~~L~s~iv  123 (327)
                      +...+......+..+..++..+.|.|.
T Consensus       702 ~k~~l~~~~~El~~~~~~i~~~~p~i~  728 (1141)
T KOG0018|consen  702 LKRSLEQNELELQRTESEIDEFGPEIS  728 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCchHH
Confidence            334444444455555555555544444

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.39  E-value=0.42  Score=39.10  Aligned_cols=58  Identities=19%  Similarity=0.262  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 020385          174 QSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKS  241 (327)
Q Consensus       174 ~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~  241 (327)
                      +.+.++-++.++.....   .+......|.+       .......+.+++..+......+..++..+.
T Consensus        78 l~rriq~LEeele~ae~---~L~e~~ekl~e-------~d~~ae~~eRkv~~le~~~~~~E~k~eel~  135 (143)
T PF12718_consen   78 LNRRIQLLEEELEEAEK---KLKETTEKLRE-------ADVKAEHFERKVKALEQERDQWEEKYEELE  135 (143)
T ss_pred             HHhhHHHHHHHHHHHHH---HHHHHHHHHHH-------HHHHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            33444444444444444   44434333444       334444444444444444443333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.33  E-value=1.5  Score=44.64  Aligned_cols=151  Identities=15%  Similarity=0.177  Sum_probs=79.1

Q ss_pred             hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELP-LV-QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT   94 (327)
Q Consensus        17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~-~~-~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~   94 (327)
                      +..+..+...+..........+..|+..|.+++.......+ .- ..-...-..|...+..|.+....|...+...-...
T Consensus        31 ~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~n  110 (617)
T PF15070_consen   31 MQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENN  110 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566667777777777777777888888877765543221 00 00000111233333334444444444444444444


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           95 GALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKM  171 (327)
Q Consensus        95 ~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el  171 (327)
                      ..|..-.......|.++...+.++....   |+ ..+.++.|.+.+..++.+-.........+....+.|-.+.++=
T Consensus       111 e~Ls~L~~EqEerL~ELE~~le~~~e~~---~D-~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~  183 (617)
T PF15070_consen  111 EQLSRLNQEQEERLAELEEELERLQEQQ---ED-RQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNEN  183 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence            4454444455556666666666655433   32 3445666666555555554444444455555555666555543

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.32  E-value=1.6  Score=44.92  Aligned_cols=93  Identities=20%  Similarity=0.275  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHHHHHhchhhhhcCHH
Q 020385           58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTE----------FDLVQSVQQNADLRSKIVQSPE  127 (327)
Q Consensus        58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~----------~~i~~~~~e~~~L~s~iv~spe  127 (327)
                      .+..+..+...|+..|++|+-.-..+-.+|..|..+.-.|...+..++          ..|..+..+++-|.+++.....
T Consensus        70 ~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~r  149 (717)
T PF09730_consen   70 ECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAAR  149 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444555555555555555555555566666666555555444332          2233444444444444332211


Q ss_pred             H-------HHHHHHHHHHHHHHHHHHHHHH
Q 020385          128 K-------LQRTLEEKKSIREEARDAEKLA  150 (327)
Q Consensus       128 ~-------lk~~le~l~~~~~~l~~~e~~~  150 (327)
                      -       |...|+.++..|++-..+++.+
T Consensus       150 Lk~iae~qleEALesl~~EReqk~~LrkEL  179 (717)
T PF09730_consen  150 LKEIAEKQLEEALESLKSEREQKNALRKEL  179 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0       3344444555555555555544

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=96.28  E-value=1.8  Score=45.06  Aligned_cols=47  Identities=23%  Similarity=0.326  Sum_probs=21.3

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          218 ERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEA  264 (327)
Q Consensus       218 e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~  264 (327)
                      +....++.+++--+.+.+-...+.-+++..++.+...+.++....+.
T Consensus       469 etv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~a  515 (1243)
T KOG0971|consen  469 ETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEA  515 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            33333344444444444444444444444555554444444444444

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.25  E-value=1.7  Score=44.63  Aligned_cols=29  Identities=24%  Similarity=0.221  Sum_probs=13.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 020385          213 EAKLIERQGKVEQLDELQQQLEKERNLKS  241 (327)
Q Consensus       213 ~~~~~e~~~~~~~l~~~l~~~~e~~~~~~  241 (327)
                      ..++..+..++...........+++..+.
T Consensus       854 eq~ls~l~~~~k~~~nli~~ltEk~~sl~  882 (970)
T KOG0946|consen  854 EQKLSNLQEKIKFGNNLIKELTEKISSLE  882 (970)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHhhhhhhHH
Confidence            33444444444444444444444444444

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.22  E-value=1.2  Score=42.64  Aligned_cols=61  Identities=13%  Similarity=0.285  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           29 EQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNK   89 (327)
Q Consensus        29 ~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~   89 (327)
                      .+++++..++..++..|..........+..++.+..++..+...|......-..+...+..
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~   98 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIAD   98 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence            5666777777777777666666554444444444444444444444433333333333333

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.22  E-value=0.0012  Score=68.28  Aligned_cols=46  Identities=7%  Similarity=0.098  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 020385          265 RQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQ  310 (327)
Q Consensus       265 ~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~  310 (327)
                      ....+......|..++..+...+...+.|.+-|...|.++.-.++.
T Consensus       627 L~~ql~e~~~~i~~lE~~~e~~k~~~~~EekLi~sa~y~~g~~~~~  672 (713)
T PF05622_consen  627 LKKQLQEKDRRIESLEKELEKSKQMREQEEKLIVSAWYNLGMRLHR  672 (713)
T ss_dssp             ----------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445666667777667777777777777777777666553

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.18  E-value=0.9  Score=40.83  Aligned_cols=67  Identities=16%  Similarity=0.321  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHH
Q 020385           72 TIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKS  138 (327)
Q Consensus        72 ~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~  138 (327)
                      ....+.++...|...+..+-.+..++..++...+..+..+..+|+.|+..|+.-.+.|+.....|..
T Consensus        46 ~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~  112 (265)
T COG3883          46 EKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV  112 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444444444444445555555555555556666666666666666666666666655

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=96.12  E-value=1  Score=40.79  Aligned_cols=121  Identities=14%  Similarity=0.239  Sum_probs=68.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhc-CHHHHHHHHHHH
Q 020385           58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ-SPEKLQRTLEEK  136 (327)
Q Consensus        58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~-spe~lk~~le~l  136 (327)
                      .+..+..++..|..+.......-..+.............|...+..+...|..+......|-..... +|..+.+.+.+.
T Consensus        53 ~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea  132 (264)
T PF06008_consen   53 ELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEA  132 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHH
Confidence            3455555555555555555555556666666666677777777777777777777777777663333 344466666664


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385          137 KSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKS  190 (327)
Q Consensus       137 ~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~  190 (327)
                      ......   ++.      +.   .......++.++..+..++..+...+.+...
T Consensus       133 ~~mL~e---mr~------r~---f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~  174 (264)
T PF06008_consen  133 QRMLEE---MRK------RD---FTPQRQNAEDELKEAEDLLSRVQKWFQKPQQ  174 (264)
T ss_pred             HHHHHH---HHh------cc---chhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            432111   111      11   2222345566666666777766666654444

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.07  E-value=0.62  Score=37.88  Aligned_cols=100  Identities=19%  Similarity=0.340  Sum_probs=60.6

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           19 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALD   98 (327)
Q Consensus        19 ~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~   98 (327)
                      .+.++........+.+.+.+..|+.+++........-.....-..+.+..|...|..+......+..++..+..++..|.
T Consensus         7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~   86 (140)
T PF10473_consen    7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD   86 (140)
T ss_pred             HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555566666666677777777766666555555555555566666666666666666666666666666666666


Q ss_pred             HHHhhhHHHHHHHHHHHHhc
Q 020385           99 EKFSQTEFDLVQSVQQNADL  118 (327)
Q Consensus        99 ~~l~~~~~~i~~~~~e~~~L  118 (327)
                      ..+......+..+..-+..+
T Consensus        87 k~lq~~q~kv~eLE~~~~~~  106 (140)
T PF10473_consen   87 KELQKKQEKVSELESLNSSL  106 (140)
T ss_pred             HHHHHHHHHHHHHHHHhHHH
Confidence            66666555555554444333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.01  E-value=0.69  Score=37.87  Aligned_cols=90  Identities=13%  Similarity=0.157  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHH
Q 020385          146 AEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQ  225 (327)
Q Consensus       146 ~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~  225 (327)
                      +..++......+...-+.+...+.+|.++...+..++.++.++..   .+...+..+.....    ......-+.++++.
T Consensus        12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~---~l~~~k~~lee~~~----~~~~~E~l~rriq~   84 (143)
T PF12718_consen   12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEE---QLKEAKEKLEESEK----RKSNAEQLNRRIQL   84 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHH----HHHhHHHHHhhHHH
Confidence            333333333444444455566666777777777777777776666   55555444433111    11123345555555


Q ss_pred             HHHHHHHHHHHHHHhHH
Q 020385          226 LDELQQQLEKERNLKSE  242 (327)
Q Consensus       226 l~~~l~~~~e~~~~~~~  242 (327)
                      +++.+......+.....
T Consensus        85 LEeele~ae~~L~e~~e  101 (143)
T PF12718_consen   85 LEEELEEAEKKLKETTE  101 (143)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555555544444444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=95.91  E-value=1.8  Score=41.80  Aligned_cols=89  Identities=17%  Similarity=0.238  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 020385           32 SELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQS  111 (327)
Q Consensus        32 ~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~  111 (327)
                      .-+..+++.+..+...+-..+.    ....+...+..|..+-+.+...-..+..-...+|.+..+....++.+...|...
T Consensus       267 ~~i~~~i~~lk~~n~~l~e~i~----ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~k  342 (622)
T COG5185         267 HIINTDIANLKTQNDNLYEKIQ----EAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELK  342 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            3556666666666665555433    344555567777777777777777777778888888888888888888888888


Q ss_pred             HHHHHhchhhhhc
Q 020385          112 VQQNADLRSKIVQ  124 (327)
Q Consensus       112 ~~e~~~L~s~iv~  124 (327)
                      ..++.-|++.+..
T Consensus       343 Eeei~~L~~~~d~  355 (622)
T COG5185         343 EEEIKALQSNIDE  355 (622)
T ss_pred             HHHHHHHHhhHHH
Confidence            8888777766543

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=95.78  E-value=3.5  Score=44.29  Aligned_cols=59  Identities=17%  Similarity=0.251  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385           60 QEVDAKVKELRQTIQDLNK-HQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL  118 (327)
Q Consensus        60 ~~l~~~~~eL~~~i~~l~~-~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L  118 (327)
                      .+++..+..++....++++ ....++.++..+...-.....++..+...+..+..+.+.+
T Consensus       468 keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~  527 (1317)
T KOG0612|consen  468 KELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA  527 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444443 2222333344444444444444444444444444444444

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.65  E-value=4.9  Score=44.96  Aligned_cols=116  Identities=7%  Similarity=0.086  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHH
Q 020385          164 YQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSED  243 (327)
Q Consensus       164 ~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~  243 (327)
                      +..+...+..+...+..+......+.............+..       +...+......+..+..++.....++..+...
T Consensus       846 l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~-------ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~  918 (1353)
T TIGR02680       846 LEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAAR-------AESDAREAAEDAAEARAEAEEASLRLRTLEES  918 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444455555544444444444444444555544       44444444444444444444444444444443


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          244 ATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV  286 (327)
Q Consensus       244 ~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~  286 (327)
                      ....+.++...+...+..++....++.+....+......+...
T Consensus       919 l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a  961 (1353)
T TIGR02680       919 VGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRA  961 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322444444444444444444444444444444444444433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=95.62  E-value=1.3  Score=38.18  Aligned_cols=55  Identities=18%  Similarity=0.295  Sum_probs=24.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          212 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQ  266 (327)
Q Consensus       212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~  266 (327)
                      +...+.+...++..+..++.-.......-.....++...+..++..+..++....
T Consensus       130 ~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~  184 (194)
T PF15619_consen  130 LEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLN  184 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444445444444444444444444444444444444444444444333

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=95.60  E-value=0.46  Score=42.46  Aligned_cols=114  Identities=14%  Similarity=0.230  Sum_probs=100.4

Q ss_pred             hhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           15 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT   94 (327)
Q Consensus        15 ~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~   94 (327)
                      .-+.++..+.+.+.-...+-+-.++-|++.+.+-+.+...+...+..+..+++.|-.....+.+....+..++.--....
T Consensus        18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv   97 (307)
T PF10481_consen   18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV   97 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence            45778888999999999999999999999999999998888889999999999999999999999999999988888888


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHH
Q 020385           95 GALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEK  128 (327)
Q Consensus        95 ~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~  128 (327)
                      .-+..+++..+..|..+.+++.++++.+..|...
T Consensus        98 ~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~  131 (307)
T PF10481_consen   98 NFLEGQLNSCKKQIEKLEQELKRCKSELERSQQA  131 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888999999999999999999888777655444

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=95.58  E-value=4.1  Score=43.62  Aligned_cols=29  Identities=10%  Similarity=0.160  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020385          161 LEVYQKTLKKMSKQSAQMQAILEQVNSAK  189 (327)
Q Consensus       161 ~e~~~~~e~el~~~~~~l~~~~~el~~~~  189 (327)
                      .+.+..+-.++......|..++.++...+
T Consensus      1583 ~~ai~~a~~~~~~a~~~l~kv~~~t~~aE 1611 (1758)
T KOG0994|consen 1583 QDAIQGADRDIRLAQQLLAKVQEETAAAE 1611 (1758)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444445555555555444433

>PRK04863 mukB cell division protein MukB; Provisional

Probab=95.54  E-value=5.5  Score=44.78  Aligned_cols=107  Identities=14%  Similarity=0.242  Sum_probs=66.2

Q ss_pred             hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---HH------hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE---VR------ERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTT   86 (327)
Q Consensus        16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~---~~------~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~   86 (327)
                      -+..|..+.+.+.+......-++..++.-......   ..      ..-+|.+..+.....++...|..+...-...+..
T Consensus       787 ~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~f~~~pe~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  866 (1486)
T PRK04863        787 RIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQQQRSQ  866 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCcchhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666666666665555554444443   11      1235688888899999999999888888888888


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHhchhhh
Q 020385           87 LNKLKEKTGALDEKFSQTEFDLVQ-SVQQNADLRSKI  122 (327)
Q Consensus        87 ~~~lk~~~~~l~~~l~~~~~~i~~-~~~e~~~L~s~i  122 (327)
                      +..++.....|..-+-........ +..++..+..++
T Consensus       867 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~  903 (1486)
T PRK04863        867 LEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQL  903 (1486)
T ss_pred             HHHHHHHHHHHHHhchhhhhcCCccHHHHHHHHHHHH
Confidence            888887777666544443333332 333333333333

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=95.48  E-value=3.9  Score=42.66  Aligned_cols=23  Identities=17%  Similarity=0.255  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhc
Q 020385          295 QELASKAEEIVEKFQQYTNSIGT  317 (327)
Q Consensus       295 ~~~~~~~~~L~~~~~~Y~~~l~~  317 (327)
                      .-...+|-.|+.|++.-...+..
T Consensus       524 dqTI~KfRelva~Lqdqlqe~~d  546 (1243)
T KOG0971|consen  524 DQTIKKFRELVAHLQDQLQELTD  546 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445666666666665555544

>PRK09039 hypothetical protein; Validated

Probab=95.47  E-value=2.3  Score=40.08  Aligned_cols=43  Identities=14%  Similarity=0.127  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020385          247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKES  289 (327)
Q Consensus       247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~  289 (327)
                      .+..++++++.++.++..++..+++...+....+..|..+...
T Consensus       138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~  180 (343)
T PRK09039        138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRR  180 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555555554444444444444444333

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=95.38  E-value=3.5  Score=41.59  Aligned_cols=58  Identities=16%  Similarity=0.154  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 020385          140 REEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKA  200 (327)
Q Consensus       140 ~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~  200 (327)
                      ...+.......+..+.-+..-+.+...+.+.+..+...+..+......+..   ++..+..
T Consensus       277 ~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~---e~~~v~~  334 (560)
T PF06160_consen  277 EEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKE---ELERVSQ  334 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence            344444444454455555555555555555555555555555555544444   4444433

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=95.31  E-value=3.5  Score=41.17  Aligned_cols=54  Identities=6%  Similarity=0.099  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 020385          264 ARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGT  317 (327)
Q Consensus       264 ~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~~  317 (327)
                      ...-.+..+-.+|..+...|..++.++..++.+.....+.|...++.|...+..
T Consensus       282 ~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~lee  335 (629)
T KOG0963|consen  282 ALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEE  335 (629)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334466667777777777777777777777777777777777666554

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.26  E-value=1.7  Score=37.10  Aligned_cols=57  Identities=12%  Similarity=0.237  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhch
Q 020385           63 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR  119 (327)
Q Consensus        63 ~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~  119 (327)
                      ..++.+|+..+..++..-..|......+..+...|..++..+...-..+..+.+.|+
T Consensus        66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk  122 (193)
T PF14662_consen   66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLK  122 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHH
Confidence            444555555555555555555555555555555555555544444444444444443

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=95.24  E-value=4  Score=41.43  Aligned_cols=69  Identities=22%  Similarity=0.348  Sum_probs=47.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhh-hcCH
Q 020385           58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI-VQSP  126 (327)
Q Consensus        58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~i-v~sp  126 (327)
                      .+..+.....+|+..+..+.........++.....+..-|.++|......+..-..-..+|+.|| .+-|
T Consensus       163 ~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p  232 (739)
T PF07111_consen  163 ALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVP  232 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCC
Confidence            45555556666666666666666566666777777777777788887777777777788888888 4444

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=95.22  E-value=2.2  Score=38.25  Aligned_cols=45  Identities=20%  Similarity=0.302  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHhccccc
Q 020385          277 DAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPV  321 (327)
Q Consensus       277 ~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~~~~~~  321 (327)
                      ..+-.+++.++.+...+..+=......++.+++.|+..|-..|.-
T Consensus       200 ~~v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~yt~~lQ~~L~~  244 (247)
T PF06705_consen  200 NFVLEEIAALKNALALESQEREQSDDDIVQALNHYTKALQDGLRI  244 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence            347778889999999999999999999999999999999877643

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=95.20  E-value=4.4  Score=41.68  Aligned_cols=10  Identities=10%  Similarity=0.232  Sum_probs=3.7

Q ss_pred             HHHHHHHHhH
Q 020385          306 EKFQQYTNSI  315 (327)
Q Consensus       306 ~~~~~Y~~~l  315 (327)
                      ..+..+-..|
T Consensus       509 ~~~~~~f~~l  518 (650)
T TIGR03185       509 EEITKSFKKL  518 (650)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=95.10  E-value=0.086  Score=54.76  Aligned_cols=42  Identities=19%  Similarity=0.276  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 020385          264 ARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIV  305 (327)
Q Consensus       264 ~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~  305 (327)
                      .....+..+..++...+..+.-+++-|.+.+..+...|..|.
T Consensus       603 ~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~ll  644 (722)
T PF05557_consen  603 SQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSLL  644 (722)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345556677778888888888888888888888777776664

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.07  E-value=3.9  Score=40.33  Aligned_cols=60  Identities=12%  Similarity=0.088  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHH
Q 020385          165 QKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQ  231 (327)
Q Consensus       165 ~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~  231 (327)
                      .-++.+=-.+.+++..+...--.++....+++++..+..-       +..++.+...-..-.+.+++
T Consensus       173 SELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~el-------ln~q~ee~~~Lk~IAekQlE  232 (772)
T KOG0999|consen  173 SELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETEL-------LNSQLEEAIRLKEIAEKQLE  232 (772)
T ss_pred             HHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444333333344444466666555444       44444444444444444443

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=95.06  E-value=2.1  Score=37.24  Aligned_cols=123  Identities=15%  Similarity=0.214  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHH
Q 020385          166 KTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDAT  245 (327)
Q Consensus       166 ~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~  245 (327)
                      .+..+|.++.+...++.....+.+.+   +...+..=+.       |...+.++..++......+..+......      
T Consensus        80 q~~~dL~s~E~sfsdl~~ryek~K~v---i~~~k~NEE~-------Lkk~~~ey~~~l~~~eqry~aLK~hAee------  143 (207)
T PF05010_consen   80 QAYADLNSLEKSFSDLHKRYEKQKEV---IEGYKKNEET-------LKKCIEEYEERLKKEEQRYQALKAHAEE------  143 (207)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            34445555555555565555555552   2222221122       4455555555555444444444333332      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHH
Q 020385          246 RAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA---AKLQELASKAEEIVEKF  308 (327)
Q Consensus       246 ~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e---~e~~~~~~~~~~L~~~~  308 (327)
                       ++.....++..++...   ...+-++++.+...+..+.++....+   ++...+...|+.|.+.+
T Consensus       144 -kL~~ANeei~~v~~~~---~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~  205 (207)
T PF05010_consen  144 -KLEKANEEIAQVRSKH---QAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKM  205 (207)
T ss_pred             -HHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             3333333333332222   22333344555555666666655554   56666777777777654

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=95.03  E-value=3.6  Score=39.69  Aligned_cols=163  Identities=14%  Similarity=0.163  Sum_probs=82.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhch
Q 020385          125 SPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLND  204 (327)
Q Consensus       125 spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~  204 (327)
                      -..+|+..++++-..+-.+.--....   -+-++++.+.+..+.+.|....+--+.++-++.+.+.   +.-.|+++...
T Consensus       363 iinkLk~niEeLIedKY~viLEKnd~---~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~---nyv~LQEry~~  436 (527)
T PF15066_consen  363 IINKLKENIEELIEDKYRVILEKNDI---EKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKA---NYVHLQERYMT  436 (527)
T ss_pred             HHHHHHHHHHHHHHhHhHhhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh---hHHHHHHHHHH
Confidence            34556666666666322222111112   1345556666777777888888877777777777776   77777666422


Q ss_pred             hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          205 DVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFE-NVKLEMESKRQDLEARQKKVEAVVTEVDAITSKT  283 (327)
Q Consensus       205 ~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~-~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i  283 (327)
                       .+.      +-+....+-..+.+-+..+.++...+.. ++.+++ ++.+.++-++.+...++       -+.-.+..+.
T Consensus       437 -eiQ------qKnksvsqclEmdk~LskKeeeverLQ~-lkgelEkat~SALdlLkrEKe~~E-------qefLslqeEf  501 (527)
T PF15066_consen  437 -EIQ------QKNKSVSQCLEMDKTLSKKEEEVERLQQ-LKGELEKATTSALDLLKREKETRE-------QEFLSLQEEF  501 (527)
T ss_pred             -HHH------HhhhHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence             111      1112222222233334433333333222 111222 12233333333333333       3333445555


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHH
Q 020385          284 KFVKESGAAKLQELASKAEEIVEKF  308 (327)
Q Consensus       284 ~~~~~~~e~e~~~~~~~~~~L~~~~  308 (327)
                      +......-+|.+++...|..|+++|
T Consensus       502 Qk~ekenl~ERqkLKs~leKLvaqv  526 (527)
T PF15066_consen  502 QKHEKENLEERQKLKSRLEKLVAQV  526 (527)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            5555666677777888888777765

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=95.02  E-value=0.0063  Score=63.08  Aligned_cols=14  Identities=7%  Similarity=0.347  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHH
Q 020385          299 SKAEEIVEKFQQYT  312 (327)
Q Consensus       299 ~~~~~L~~~~~~Y~  312 (327)
                      .+..-|+..++.|-
T Consensus       413 kE~d~LR~~L~syd  426 (722)
T PF05557_consen  413 KERDYLRAQLKSYD  426 (722)
T ss_dssp             --------------
T ss_pred             HHHHHHHHHHHHhh
Confidence            33334444444443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=94.99  E-value=3.1  Score=38.87  Aligned_cols=52  Identities=8%  Similarity=0.165  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 020385          257 SKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF  308 (327)
Q Consensus       257 ~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~  308 (327)
                      .+...++....+......+|..++......+.-...|+..+...|..|.+..
T Consensus       241 ~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~  292 (325)
T PF08317_consen  241 ELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLT  292 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333344444444444444445577777777777776543

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=94.95  E-value=1.7  Score=35.69  Aligned_cols=49  Identities=14%  Similarity=0.239  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 020385          261 DLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ  309 (327)
Q Consensus       261 el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~  309 (327)
                      .+......+.....++..+..-+...+..+..+++.-..+|..|..++.
T Consensus       102 ~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~  150 (151)
T PF11559_consen  102 QLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN  150 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3334444444445677788889999999999999999999999998763

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=94.89  E-value=0.0072  Score=62.55  Aligned_cols=24  Identities=8%  Similarity=0.082  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          157 KTTTLEVYQKTLKKMSKQSAQMQA  180 (327)
Q Consensus       157 l~~~~e~~~~~e~el~~~~~~l~~  180 (327)
                      +....+.+.+++..|..|.+.+++
T Consensus       303 lR~~a~r~~klE~~ve~YKkKLed  326 (713)
T PF05622_consen  303 LREKADRADKLENEVEKYKKKLED  326 (713)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444444443333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=94.82  E-value=4.1  Score=39.38  Aligned_cols=106  Identities=13%  Similarity=0.187  Sum_probs=74.6

Q ss_pred             hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA   96 (327)
Q Consensus        17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~   96 (327)
                      +..+...++...+++..|...++.|..++..-.-    .-..+..+.++...|...+...+-+...|+.....-+-..+.
T Consensus       332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~I----s~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~  407 (622)
T COG5185         332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGI----STEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQG  407 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHH
Confidence            3344444444444444444444444444433222    123677777788888888888888888888888888888888


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhchhhhhcCH
Q 020385           97 LDEKFSQTEFDLVQSVQQNADLRSKIVQSP  126 (327)
Q Consensus        97 l~~~l~~~~~~i~~~~~e~~~L~s~iv~sp  126 (327)
                      ..+.++..-+.+..+.++|..-++.|++.-
T Consensus       408 ~~~slek~~~~~~sl~~~i~~~~~~i~~~~  437 (622)
T COG5185         408 IFKSLEKTLRQYDSLIQNITRSRSQIGHNV  437 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHhhcC
Confidence            899999999999999999999988887653

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=94.80  E-value=5.2  Score=40.48  Aligned_cols=55  Identities=9%  Similarity=0.092  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 020385          257 SKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQY  311 (327)
Q Consensus       257 ~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y  311 (327)
                      .=..+++.+-.+.++-.+....-+.+...++.+.+.++..+....+.|...+..-
T Consensus       711 KHK~qYDkiVEEkDaEL~~~k~KE~E~~s~k~sLE~ELs~lk~el~slK~QLk~e  765 (786)
T PF05483_consen  711 KHKHQYDKIVEEKDAELGLYKKKEQEQSSHKASLELELSNLKNELSSLKKQLKTE  765 (786)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3345566666666666677777777777788888888888888888887776543

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.80  E-value=2.5  Score=36.71  Aligned_cols=77  Identities=21%  Similarity=0.207  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhh
Q 020385          129 LQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVL  208 (327)
Q Consensus       129 lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~  208 (327)
                      |+..+.+|+..   ....++.+.....+.....+-+..+..++..+.+.+......-..+..+...+..+..++.+..|+
T Consensus        32 LKeei~emkk~---e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e  108 (201)
T PF13851_consen   32 LKEEIAEMKKK---EERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWE  108 (201)
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555551   112222333334677777888888888888888888877776666665555566555556553333

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=94.79  E-value=3.4  Score=38.32  Aligned_cols=86  Identities=17%  Similarity=0.269  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020385           39 SQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLN--------------KHQVSLRTTLNKLKEKTGALDEKFSQT  104 (327)
Q Consensus        39 ~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~--------------~~q~~l~~~~~~lk~~~~~l~~~l~~~  104 (327)
                      --|..+++.++.++..---.+++++.....++....++.              +.+..|..-+...+.....|..++..+
T Consensus        12 ~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~L   91 (319)
T PF09789_consen   12 LILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEEL   91 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555555555544444456666666666666665555              345667777777777777777777777


Q ss_pred             HHHHHHHHHHHHhchhhhhc
Q 020385          105 EFDLVQSVQQNADLRSKIVQ  124 (327)
Q Consensus       105 ~~~i~~~~~e~~~L~s~iv~  124 (327)
                      ...+.++..+|.-|+..+..
T Consensus        92 rqkl~E~qGD~KlLR~~la~  111 (319)
T PF09789_consen   92 RQKLNEAQGDIKLLREKLAR  111 (319)
T ss_pred             HHHHHHHhchHHHHHHHHHh
Confidence            77777777777777655544

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.76  E-value=5.8  Score=40.79  Aligned_cols=102  Identities=18%  Similarity=0.246  Sum_probs=64.0

Q ss_pred             HHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          194 DYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKER---NLKSEDATRAFENVKLEMESKRQDLEARQKKVE  270 (327)
Q Consensus       194 ~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~---~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~  270 (327)
                      ++..++++|.+       ++..+..+.-..+.+..++.+.+...   ......+.+.+..-+.-+..++..++.+..+.+
T Consensus       487 ei~qlqarikE-------~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~e  559 (1118)
T KOG1029|consen  487 EIDQLQARIKE-------LQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETE  559 (1118)
T ss_pred             HHHHHHHHHHH-------HHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555       55555555555555555555554422   222333333444444555666677777888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 020385          271 AVVTEVDAITSKTKFVKESGAAKLQELASKAE  302 (327)
Q Consensus       271 ~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~  302 (327)
                      .+..+++.....+..+++.+...+-+....|-
T Consensus       560 sk~~eidi~n~qlkelk~~~~~q~lake~~yk  591 (1118)
T KOG1029|consen  560 SKLNEIDIFNNQLKELKEDVNSQQLAKEELYK  591 (1118)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888899999999999888887777766554

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.58  E-value=7.6  Score=41.35  Aligned_cols=67  Identities=19%  Similarity=0.270  Sum_probs=39.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          212 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSK  282 (327)
Q Consensus       212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~  282 (327)
                      ......+++.++..+...+..+...+..+..    .+..+...+.++..++...+..+.....+...+..+
T Consensus       400 ~~~~~~elE~r~k~l~~sver~~~~~~~L~~----~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~e  466 (1141)
T KOG0018|consen  400 ELERRAELEARIKQLKESVERLDKRRNKLAA----KITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEE  466 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHH
Confidence            4445566666666666666655555555555    666666666666666666665555544433333333

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=94.46  E-value=2.3  Score=36.32  Aligned_cols=7  Identities=29%  Similarity=0.368  Sum_probs=2.6

Q ss_pred             ccchhhh
Q 020385            3 LFPFLNL    9 (327)
Q Consensus         3 ~INf~~F    9 (327)
                      +.+|+..
T Consensus        57 ~~~~~~~   63 (191)
T PF04156_consen   57 LLCLLSK   63 (191)
T ss_pred             HHHHHHc
Confidence            3333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=94.42  E-value=8.7  Score=41.34  Aligned_cols=48  Identities=6%  Similarity=0.075  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 020385          155 QEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARL  202 (327)
Q Consensus       155 ~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l  202 (327)
                      ..+.+.-..+....-|+.....++++...-...+..++.......+-|
T Consensus      1525 ~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL 1572 (1758)
T KOG0994|consen 1525 ASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEAL 1572 (1758)
T ss_pred             HhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            333333344444445555555555554444444444333333333333

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=94.36  E-value=4.2  Score=37.52  Aligned_cols=111  Identities=12%  Similarity=0.244  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020385          158 TTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKER  237 (327)
Q Consensus       158 ~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~  237 (327)
                      ++.+..+..-..-+..+...+++-+.+...++.   .-..+.++|-.       ...-.....++.+++++.+..+.++.
T Consensus        74 q~kirk~~e~~eglr~i~es~~e~q~e~~qL~~---qnqkL~nqL~~-------~~~vf~k~k~~~q~LE~li~~~~EEn  143 (401)
T PF06785_consen   74 QTKIRKITEKDEGLRKIRESVEERQQESEQLQS---QNQKLKNQLFH-------VREVFMKTKGDIQHLEGLIRHLREEN  143 (401)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHH-------HHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            333333333333344444444444444444444   33333333433       44445566677777778888777777


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          238 NLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSK  282 (327)
Q Consensus       238 ~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~  282 (327)
                      ..+..    +++++..+..++.++-....+++.+..+-...+..+
T Consensus       144 ~~lql----qL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~e  184 (401)
T PF06785_consen  144 QCLQL----QLDALQQECGEKEEESQTLNRELAEALAYQQELNDE  184 (401)
T ss_pred             HHHHH----hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777    778888888777777777777777776555555444

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=94.26  E-value=3.1  Score=35.53  Aligned_cols=120  Identities=13%  Similarity=0.165  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 020385           27 LDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEF  106 (327)
Q Consensus        27 l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~  106 (327)
                      +..++..+..+...-+..+.....++.+.+....+-..-...+.+....+......+...+...+.-......+.+..-.
T Consensus         9 lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVar   88 (205)
T KOG1003|consen    9 LNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVAR   88 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444455566666666777777777777777777777667777777


Q ss_pred             HHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHH
Q 020385          107 DLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDA  146 (327)
Q Consensus       107 ~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~  146 (327)
                      .++-+..+.++...+.......+...-++++-....++.+
T Consensus        89 kL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l  128 (205)
T KOG1003|consen   89 KLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSL  128 (205)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence            7777777776665555555444444444433333333333

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=94.19  E-value=6.3  Score=38.83  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHh
Q 020385          291 AAKLQELASKAEEIVEKFQQYTNSIG  316 (327)
Q Consensus       291 e~e~~~~~~~~~~L~~~~~~Y~~~l~  316 (327)
                      .+++.+-...-.+|..--..|..++.
T Consensus       515 ~~~v~~~l~eAe~lF~~~~dY~~s~e  540 (570)
T COG4477         515 NAEVAKSLNEAERLFENAFDYDASFE  540 (570)
T ss_pred             hHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            35555555555555554455666554

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=94.18  E-value=3.5  Score=35.88  Aligned_cols=69  Identities=7%  Similarity=0.075  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385          222 KVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESG  290 (327)
Q Consensus       222 ~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~  290 (327)
                      -..+...++....++++.+.........+++..+.-..-.+...++.++.+..+...|..-+++|....
T Consensus       137 LK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~  205 (207)
T PF05010_consen  137 LKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKM  205 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334445667777777777777777777777777777777777777777777777777777777766543

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.17  E-value=3.2  Score=35.39  Aligned_cols=51  Identities=16%  Similarity=0.176  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHH
Q 020385          164 YQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVE  224 (327)
Q Consensus       164 ~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~  224 (327)
                      -..++++-..+...++.++.+..+...   +...++....+       |......++.++-
T Consensus        90 ~rqlEkE~q~L~~~i~~Lqeen~kl~~---e~~~lk~~~~e-------L~~~~~~Lq~Ql~  140 (193)
T PF14662_consen   90 ARQLEKEQQSLVAEIETLQEENGKLLA---ERDGLKKRSKE-------LATEKATLQRQLC  140 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHH---hhhhHHHHHHH-------HHHhhHHHHHHHH
Confidence            345566667777777777777666665   55555444444       4444444444443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=94.16  E-value=7.7  Score=39.74  Aligned_cols=31  Identities=16%  Similarity=0.132  Sum_probs=12.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH
Q 020385          212 LEAKLIERQGKVEQLDELQQQLEKERNLKSE  242 (327)
Q Consensus       212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~  242 (327)
                      ++..+.+....++........++++...+..
T Consensus       585 i~~~~~e~~~ele~~~~k~~rleEE~e~L~~  615 (698)
T KOG0978|consen  585 IQEQYAELELELEIEKFKRKRLEEELERLKR  615 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444444443

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.99  E-value=0.95  Score=38.99  Aligned_cols=76  Identities=18%  Similarity=0.253  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385           43 AEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL  118 (327)
Q Consensus        43 ~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L  118 (327)
                      ..+..++.........+..+...+..|...+..+..........+..++++...|.-+.+.+...+..+..|...|
T Consensus       102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L  177 (194)
T PF08614_consen  102 DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL  177 (194)
T ss_dssp             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333334444444444444444444444444444444444444444444555555555555555555

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=93.92  E-value=1.5  Score=31.62  Aligned_cols=70  Identities=24%  Similarity=0.328  Sum_probs=43.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385           24 LTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ  103 (327)
Q Consensus        24 ~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~  103 (327)
                      .+.+..++.+.-+.|.-|+.+|++++.              .+..|...+.........|..+...++.+...+.+.|..
T Consensus         6 leqLE~KIqqAvdtI~LLqmEieELKe--------------kn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~   71 (79)
T PRK15422          6 FEKLEAKVQQAIDTITLLQMEIEELKE--------------KNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA   71 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666677777777777776666              444555555555556666666666666666666666655


Q ss_pred             hHHH
Q 020385          104 TEFD  107 (327)
Q Consensus       104 ~~~~  107 (327)
                      +-..
T Consensus        72 LLGk   75 (79)
T PRK15422         72 LLGR   75 (79)
T ss_pred             HHHh
Confidence            4433

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=93.89  E-value=9  Score=39.57  Aligned_cols=65  Identities=22%  Similarity=0.243  Sum_probs=43.9

Q ss_pred             hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQV   81 (327)
Q Consensus        17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~   81 (327)
                      .+.+......+......+..+...|..+|.+++..-...-..+.++..+|-.|+..+..|+..|.
T Consensus        57 ~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQv  121 (717)
T PF09730_consen   57 NERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQV  121 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH
Confidence            34444445555555555555666666666666666666667888888899888888888877753

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PRK09039 hypothetical protein; Validated

Probab=93.85  E-value=5.9  Score=37.34  Aligned_cols=27  Identities=15%  Similarity=0.110  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHhchhhhhcCHHHHHH
Q 020385          105 EFDLVQSVQQNADLRSKIVQSPEKLQR  131 (327)
Q Consensus       105 ~~~i~~~~~e~~~L~s~iv~spe~lk~  131 (327)
                      ...+.....+++.|.++|...|+-|.-
T Consensus        45 s~~i~~~~~eL~~L~~qIa~L~e~L~l   71 (343)
T PRK09039         45 SREISGKDSALDRLNSQIAELADLLSL   71 (343)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            445666666777776666665555433

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=93.81  E-value=11  Score=40.08  Aligned_cols=33  Identities=18%  Similarity=0.088  Sum_probs=16.9

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           19 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNEV   51 (327)
Q Consensus        19 ~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~   51 (327)
                      +-.-.++-+.+++..+..+|..|...-+.++..
T Consensus       254 erlmDs~fykdRveelkedN~vLleekeMLeeQ  286 (1195)
T KOG4643|consen  254 ERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQ  286 (1195)
T ss_pred             hhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            333334445555555655555555555555443

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=93.76  E-value=10  Score=39.64  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=13.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           25 TRLDEQRSELEDKISQLNAEIAAYN   49 (327)
Q Consensus        25 e~l~~~~~~l~~~~~~l~~~i~~~k   49 (327)
                      +.....+.++..+.+.+...+..+.
T Consensus       329 d~~~~~~~~~~~e~~~~~~~l~~~~  353 (980)
T KOG0980|consen  329 DPRELQIEQLSREVAQLKAQLENLK  353 (980)
T ss_pred             ChhhHHHHHHHHHHHHHhhhhhhHH
Confidence            3444555555555555555555443

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=93.75  E-value=4  Score=35.02  Aligned_cols=103  Identities=22%  Similarity=0.271  Sum_probs=55.9

Q ss_pred             hhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 020385           14 MNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLK--   91 (327)
Q Consensus        14 ~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk--   91 (327)
                      ...........+.+..++..+...+..+...|+..+..+... ..-..+-       .++..+......|..++..+.  
T Consensus        61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l-------~~l~~l~~~~~~l~~el~~~~~~  132 (188)
T PF03962_consen   61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELL-------EELEELKKELKELKKELEKYSEN  132 (188)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhc
Confidence            334456667777777777888888888888888876655433 1222222       233333333333333333222  


Q ss_pred             --HHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhc
Q 020385           92 --EKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ  124 (327)
Q Consensus        92 --~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~  124 (327)
                        .....+...+..+...++.-...|.-|.++++.
T Consensus       133 Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~  167 (188)
T PF03962_consen  133 DPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKK  167 (188)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence              234444445555555555566666666666655

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=93.49  E-value=3.3  Score=33.27  Aligned_cols=83  Identities=16%  Similarity=0.204  Sum_probs=40.6

Q ss_pred             HHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          108 LVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNS  187 (327)
Q Consensus       108 i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~  187 (327)
                      +..+..++..+...+......+.....++.........+...+..=..--...+..+..+..++..+...+..+......
T Consensus         5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~   84 (132)
T PF07926_consen    5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAES   84 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444445555555555553333333333322111444455556666666666666666666555555


Q ss_pred             Hhh
Q 020385          188 AKS  190 (327)
Q Consensus       188 ~~~  190 (327)
                      ...
T Consensus        85 a~~   87 (132)
T PF07926_consen   85 AKA   87 (132)
T ss_pred             HHH
Confidence            544

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=93.45  E-value=13  Score=39.92  Aligned_cols=22  Identities=18%  Similarity=0.593  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 020385           59 VQEVDAKVKELRQTIQDLNKHQV   81 (327)
Q Consensus        59 ~~~l~~~~~eL~~~i~~l~~~q~   81 (327)
                      +..+..++..+.. +..++..+.
T Consensus       205 ~~~~~~e~~~~~~-l~e~~~~~~  226 (908)
T COG0419         205 LEALEEELKELKK-LEEIQEEQE  226 (908)
T ss_pred             HHHHHHHHHHHHh-HHHHHHHHh
Confidence            3444444444444 444444443

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=93.40  E-value=6.4  Score=36.26  Aligned_cols=10  Identities=30%  Similarity=0.398  Sum_probs=5.2

Q ss_pred             HHHHHHHHHH
Q 020385          129 LQRTLEEKKS  138 (327)
Q Consensus       129 lk~~le~l~~  138 (327)
                      |++.+..+..
T Consensus       165 Lq~Klk~LEe  174 (306)
T PF04849_consen  165 LQEKLKSLEE  174 (306)
T ss_pred             HHHHHHHHHH
Confidence            5555555544

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=93.32  E-value=5  Score=34.80  Aligned_cols=13  Identities=8%  Similarity=0.227  Sum_probs=5.1

Q ss_pred             HHHHHHHHHhchh
Q 020385          108 LVQSVQQNADLRS  120 (327)
Q Consensus       108 i~~~~~e~~~L~s  120 (327)
                      |..+..++..++.
T Consensus        29 IksLKeei~emkk   41 (201)
T PF13851_consen   29 IKSLKEEIAEMKK   41 (201)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333444444433

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=93.23  E-value=7  Score=36.28  Aligned_cols=20  Identities=20%  Similarity=0.233  Sum_probs=10.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHH
Q 020385          212 LEAKLIERQGKVEQLDELQQ  231 (327)
Q Consensus       212 l~~~~~e~~~~~~~l~~~l~  231 (327)
                      |..++.-+..+...++..+.
T Consensus       214 Lr~QL~~Y~~Kf~efq~tL~  233 (309)
T PF09728_consen  214 LREQLNLYSEKFEEFQDTLN  233 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555544443

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=93.16  E-value=11  Score=38.29  Aligned_cols=62  Identities=19%  Similarity=0.307  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 020385          254 EMESKRQDLEARQ------KKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSI  315 (327)
Q Consensus       254 e~~~~~~el~~~~------~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l  315 (327)
                      +++.++..+...+      ...+.+.......+..+..+....+++|..+...+..+...=..|-..+
T Consensus       406 eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQV  473 (786)
T PF05483_consen  406 ELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQV  473 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHH
Confidence            3444444444444      2333333555556666666777777777777777666666555554443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.09  E-value=12  Score=38.58  Aligned_cols=28  Identities=14%  Similarity=0.310  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          247 AFENVKLEMESKRQDLEARQKKVEAVVT  274 (327)
Q Consensus       247 k~~~~~~e~~~~~~el~~~~~~~~~~~~  274 (327)
                      ++.++..+.++...+++..+..+...+.
T Consensus       550 qldelskE~esk~~eidi~n~qlkelk~  577 (1118)
T KOG1029|consen  550 QLDELSKETESKLNEIDIFNNQLKELKE  577 (1118)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            6666666666666666666655555543

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=93.02  E-value=11  Score=38.14  Aligned_cols=98  Identities=27%  Similarity=0.282  Sum_probs=48.8

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           19 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALD   98 (327)
Q Consensus        19 ~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~   98 (327)
                      +-..+.+.+..+++.+...+..+...+..+..........+.+....+.+++..+.-..+....|-.    -......|.
T Consensus       325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d----~e~ni~kL~  400 (594)
T PF05667_consen  325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPD----AEENIAKLQ  400 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cHHHHHHHH
Confidence            3344555555555555555555555555555555555555555555555555544433332222221    112234445


Q ss_pred             HHHhhhHHHHHHHHHHHHhchh
Q 020385           99 EKFSQTEFDLVQSVQQNADLRS  120 (327)
Q Consensus        99 ~~l~~~~~~i~~~~~e~~~L~s  120 (327)
                      .-+......+.++..+.+..+.
T Consensus       401 ~~v~~s~~rl~~L~~qWe~~R~  422 (594)
T PF05667_consen  401 ALVEASEQRLVELAQQWEKHRA  422 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            5555555555555555555544

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=92.87  E-value=8.6  Score=36.32  Aligned_cols=35  Identities=14%  Similarity=0.211  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020385          155 QEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAK  189 (327)
Q Consensus       155 ~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~  189 (327)
                      +++.+..+..+..++++.......+......+...
T Consensus       203 ~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd  237 (499)
T COG4372         203 QNLATRANAAQARTEELARRAAAAQQTAQAIQQRD  237 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777766666555554443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=92.72  E-value=8.4  Score=35.82  Aligned_cols=31  Identities=19%  Similarity=0.216  Sum_probs=17.1

Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           53 ERELPLVQEVDAKVKELRQTIQDLNKHQVSL   83 (327)
Q Consensus        53 ~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l   83 (327)
                      .-.-|.++-.+--+++|...|.+-......+
T Consensus        59 ~~~iP~LElY~~sC~EL~~~I~egr~~~~~~   89 (312)
T smart00787       59 YCTVPLLELYQFSCKELKKYISEGRDLFKEI   89 (312)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344666666666666666665544443333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=92.67  E-value=12  Score=37.53  Aligned_cols=56  Identities=13%  Similarity=0.259  Sum_probs=25.9

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 020385           20 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH   79 (327)
Q Consensus        20 l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~   79 (327)
                      +......++...+....++..+...+.++...+.    .+..++..+..|..++..++..
T Consensus       105 ll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~----~~k~qq~~v~~l~e~l~k~~~~  160 (629)
T KOG0963|consen  105 LLASAAELLNKQQKASEENEELKEELEEVNNELA----DLKTQQVTVRNLKERLRKLEQL  160 (629)
T ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHh----hhhhhHHHHHhHHHHHHHHHHH
Confidence            3344444444444445555555555555555433    2223333444444444444444

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=92.65  E-value=13  Score=37.81  Aligned_cols=68  Identities=21%  Similarity=0.330  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHH
Q 020385           63 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA-L-DEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQ  130 (327)
Q Consensus        63 ~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~-l-~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk  130 (327)
                      -+.+..|+.....+-+...+++.+...+|.+... | .+.|......|..+..+-++|..++.+-...++
T Consensus       408 ~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIk  477 (961)
T KOG4673|consen  408 HQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIK  477 (961)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3344444444444444444444444444433322 1 135666777888888888888777666555443

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.47  E-value=7.3  Score=34.52  Aligned_cols=11  Identities=9%  Similarity=0.129  Sum_probs=4.0

Q ss_pred             HHHHHHHHHHH
Q 020385          275 EVDAITSKTKF  285 (327)
Q Consensus       275 ei~~le~~i~~  285 (327)
                      ++.-+...|+.
T Consensus        89 ey~~Lk~~in~   99 (230)
T PF10146_consen   89 EYKPLKDEINE   99 (230)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.40  E-value=4.1  Score=37.93  Aligned_cols=94  Identities=19%  Similarity=0.241  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 020385           28 DEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFD  107 (327)
Q Consensus        28 ~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~  107 (327)
                      ......+..++..++.+...+..++...+.+..++.+++..++.+...+...-...-..++.+.-......++...+...
T Consensus        42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q  121 (314)
T PF04111_consen   42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQ  121 (314)
T ss_dssp             HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555555666666666666666666666666666777777777777777777777


Q ss_pred             HHHHHHHHHhchhh
Q 020385          108 LVQSVQQNADLRSK  121 (327)
Q Consensus       108 i~~~~~e~~~L~s~  121 (327)
                      +..+...+++|+..
T Consensus       122 ~~~~~~~L~~L~kt  135 (314)
T PF04111_consen  122 YEYASNQLDRLRKT  135 (314)
T ss_dssp             HHHHHHHHHCHHT-
T ss_pred             HHHHHHHHHHHHhc
Confidence            77777777777643

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=92.39  E-value=17  Score=38.59  Aligned_cols=54  Identities=17%  Similarity=0.239  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHH--HHHHHHHHHH
Q 020385           85 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEK--LQRTLEEKKS  138 (327)
Q Consensus        85 ~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~--lk~~le~l~~  138 (327)
                      .++..+..+..+|.+.+..-+..+..+.++++.|..-+..--++  ++..|+-|..
T Consensus       181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~  236 (1072)
T KOG0979|consen  181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEK  236 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555566666666666666666666666665544333333  6666666655

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.34  E-value=2.8  Score=29.39  Aligned_cols=48  Identities=21%  Similarity=0.270  Sum_probs=29.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 020385           24 LTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQ   71 (327)
Q Consensus        24 ~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~   71 (327)
                      .+.+..++.+.-+.|.-|+.+|++++.+......+++..+..+..|..
T Consensus         6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~   53 (79)
T COG3074           6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALER   53 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence            345666777777888888888888887544333344443333333333

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=92.33  E-value=23  Score=39.85  Aligned_cols=35  Identities=20%  Similarity=0.346  Sum_probs=17.6

Q ss_pred             hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEV   51 (327)
Q Consensus        17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~   51 (327)
                      +.+|...+..+..++..+.+.+..+...+..+...
T Consensus       744 i~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e  778 (1353)
T TIGR02680       744 IAELDARLAAVDDELAELARELRALGARQRALADE  778 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555555555555555443

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=92.31  E-value=9.7  Score=35.57  Aligned_cols=26  Identities=23%  Similarity=0.170  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchh
Q 020385           32 SELEDKISQLNAEIAAYNEVRERELP   57 (327)
Q Consensus        32 ~~l~~~~~~l~~~i~~~k~~~~~~e~   57 (327)
                      ++|...|.....-+.++.......-|
T Consensus        78 ~EL~~~I~egr~~~~~~E~~~~~~nP  103 (325)
T PF08317_consen   78 RELKKYISEGRQIFEEIEEETYESNP  103 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            34444455555555555555444444

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=92.30  E-value=15  Score=37.58  Aligned_cols=33  Identities=33%  Similarity=0.286  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH
Q 020385          210 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSE  242 (327)
Q Consensus       210 k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~  242 (327)
                      +.|..++.+++.++..+...++.+..+...+..
T Consensus       198 keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~  230 (617)
T PF15070_consen  198 KELQKKLGELQEKLHNLKEKLELKSQEAQSLQE  230 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            346677777777777777777766666655555

>TIGR00634 recN DNA repair protein RecN

Probab=92.16  E-value=14  Score=37.22  Aligned_cols=35  Identities=14%  Similarity=0.272  Sum_probs=18.6

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHH
Q 020385           95 GALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL  129 (327)
Q Consensus        95 ~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~l  129 (327)
                      ..+.+.+++....+..+..++..+.+.+.-+|++|
T Consensus       269 ~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L  303 (563)
T TIGR00634       269 RELAEQVGNALTEVEEATRELQNYLDELEFDPERL  303 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence            44444555555555555555555555555555553

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.13  E-value=8.7  Score=34.63  Aligned_cols=11  Identities=18%  Similarity=0.184  Sum_probs=4.0

Q ss_pred             HHHHHhHHHHH
Q 020385          216 LIERQGKVEQL  226 (327)
Q Consensus       216 ~~e~~~~~~~l  226 (327)
                      ..+++..+..|
T Consensus       178 ~~e~e~~~~~L  188 (265)
T COG3883         178 QNELETQLNSL  188 (265)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=92.11  E-value=11  Score=35.69  Aligned_cols=62  Identities=6%  Similarity=0.110  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 020385          247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF  308 (327)
Q Consensus       247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~  308 (327)
                      ++....+++....+.+.+.++++..+-...+-++.++..+..-+..-+.--......+.+.+
T Consensus       239 ~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y~~lr~q~~a~~rGQv  300 (499)
T COG4372         239 QISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQRGQV  300 (499)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            56666666677777777777777776666777777777777777666555555444444433

>smart00787 Spc7 Spc7 kinetochore protein

Probab=91.77  E-value=11  Score=35.04  Aligned_cols=30  Identities=7%  Similarity=0.045  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 020385          278 AITSKTKFVKESGAAKLQELASKAEEIVEK  307 (327)
Q Consensus       278 ~le~~i~~~~~~~e~e~~~~~~~~~~L~~~  307 (327)
                      ..++....-+.-...|+..+...|..|...
T Consensus       257 ~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l  286 (312)
T smart00787      257 EAEKKLEQCRGFTFKEIEKLKEQLKLLQSL  286 (312)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            333333333333446666666666655543

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=91.71  E-value=13  Score=35.78  Aligned_cols=46  Identities=15%  Similarity=0.200  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 020385           67 KELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSV  112 (327)
Q Consensus        67 ~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~  112 (327)
                      ..|+..|..++.....+...+.........+...|.+..+.+..+.
T Consensus        62 ~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~  107 (420)
T COG4942          62 AKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE  107 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence            3333333333333334444444444444444444444444444333

>PRK10884 SH3 domain-containing protein; Provisional

Probab=91.01  E-value=8  Score=33.68  Aligned_cols=75  Identities=8%  Similarity=0.144  Sum_probs=38.2

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385          216 LIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESG  290 (327)
Q Consensus       216 ~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~  290 (327)
                      +..++.++..++.++.+.....+....+.+.++....+.+..+..+......++...+.+++.++.+.+.++...
T Consensus        95 lp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~  169 (206)
T PRK10884         95 VPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI  169 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444455555555555555555555555555566666666655555443

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=90.98  E-value=28  Score=38.25  Aligned_cols=33  Identities=15%  Similarity=0.088  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          253 LEMESKRQDLEARQKKVEAVVTEVDAITSKTKF  285 (327)
Q Consensus       253 ~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~  285 (327)
                      .+..-+..+++........+.++...+++.+..
T Consensus      1041 ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~ 1073 (1294)
T KOG0962|consen 1041 EERVKLEEEREKLSSEKNLLLGEMKQYESQIKK 1073 (1294)
T ss_pred             HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444444

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.71  E-value=7.1  Score=30.89  Aligned_cols=41  Identities=15%  Similarity=0.236  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 020385          247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKL  294 (327)
Q Consensus       247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~  294 (327)
                      .+.+++..+..+.+=+.++.       .++..++..|.+++.=|-.-+
T Consensus        76 el~~l~~ry~t~LellGEK~-------E~veEL~~Dv~DlK~myr~Qi  116 (120)
T PF12325_consen   76 ELEELQQRYQTLLELLGEKS-------EEVEELRADVQDLKEMYREQI  116 (120)
T ss_pred             HHHHHHHHHHHHHHHhcchH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            44444444455555555555       444455555555555444333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.63  E-value=19  Score=35.72  Aligned_cols=106  Identities=15%  Similarity=0.221  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 020385          161 LEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLK  240 (327)
Q Consensus       161 ~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~  240 (327)
                      +..+..++.++......+..+..+..+...+..+.+....-++....   .|...+.++..+-.++=..+..+.+++-.+
T Consensus       106 l~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~---rlr~elKe~KfRE~RllseYSELEEENIsL  182 (772)
T KOG0999|consen  106 LQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRR---RLRDELKEYKFREARLLSEYSELEEENISL  182 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            33456777788888878888877777777655555544322222111   355666667666666666666666665555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          241 SEDATRAFENVKLEMESKRQDLEARQKKVE  270 (327)
Q Consensus       241 ~~~~~~k~~~~~~e~~~~~~el~~~~~~~~  270 (327)
                      ..+-. -+..-+-+++.++.++...+...+
T Consensus       183 QKqVs-~LR~sQVEyEglkheikRleEe~e  211 (772)
T KOG0999|consen  183 QKQVS-NLRQSQVEYEGLKHEIKRLEEETE  211 (772)
T ss_pred             HHHHH-HHhhhhhhhhHHHHHHHHHHHHHH
Confidence            44211 222334466666666666554433

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=90.61  E-value=13  Score=33.62  Aligned_cols=49  Identities=12%  Similarity=0.125  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 020385           65 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQ  113 (327)
Q Consensus        65 ~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~  113 (327)
                      ...........+...-.....+...+......+...|..+...+..+..
T Consensus        67 k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~  115 (264)
T PF06008_consen   67 KATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE  115 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            3333333333333333333344444444444444444444444443333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=90.29  E-value=4.7  Score=29.12  Aligned_cols=67  Identities=21%  Similarity=0.292  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHH
Q 020385           67 KELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTL  133 (327)
Q Consensus        67 ~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~l  133 (327)
                      ..|+++|...-.....|+-++..+|.+...+..+...+...-..+.+++..|+..-..=.++|..-+
T Consensus         7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL   73 (79)
T PRK15422          7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL   73 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666666677777888888888888888888888888888888888887655554445544443

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=90.26  E-value=26  Score=36.69  Aligned_cols=57  Identities=9%  Similarity=0.016  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchh
Q 020385           64 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS  120 (327)
Q Consensus        64 ~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s  120 (327)
                      .+++....+|.++...-..+......+-..+..+...+......+..+...+..|..
T Consensus       502 ~eL~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqD  558 (769)
T PF05911_consen  502 QELNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQD  558 (769)
T ss_pred             ccHHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHH
Confidence            334444444444444444444555555555666666666666666655555555543

The function of this family is unknown.

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=90.17  E-value=11  Score=32.25  Aligned_cols=57  Identities=18%  Similarity=0.211  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHH
Q 020385           72 TIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEK  128 (327)
Q Consensus        72 ~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~  128 (327)
                      .+..+|.....+..++.....+......+|..+...-.+...-+.-|..+..+..++
T Consensus         5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~   61 (205)
T KOG1003|consen    5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEK   61 (205)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHH
Confidence            344555555555566666666666666666665555544444444444444444443

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=89.58  E-value=13  Score=35.28  Aligned_cols=100  Identities=16%  Similarity=0.214  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 020385           36 DKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQN  115 (327)
Q Consensus        36 ~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~  115 (327)
                      .....+...|...-.++..-+..++.   .+..+.+..+.........+..|..+....++++..|..+...+..+++++
T Consensus       241 ~~L~kl~~~i~~~lekI~sREk~iN~---qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~em  317 (359)
T PF10498_consen  241 SQLDKLQQDISKTLEKIESREKYINN---QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEM  317 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444443332   333333333333344444444555555555555555666555555555555


Q ss_pred             Hhchhhh-hcCHH-HHHHHHHHHHH
Q 020385          116 ADLRSKI-VQSPE-KLQRTLEEKKS  138 (327)
Q Consensus       116 ~~L~s~i-v~spe-~lk~~le~l~~  138 (327)
                      +.--+.+ ..+|= ++|..|..|+.
T Consensus       318 eerg~~mtD~sPlv~IKqAl~kLk~  342 (359)
T PF10498_consen  318 EERGSSMTDGSPLVKIKQALTKLKQ  342 (359)
T ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHH
Confidence            5442222 23342 25555544444

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=89.38  E-value=11  Score=32.98  Aligned_cols=99  Identities=20%  Similarity=0.250  Sum_probs=62.0

Q ss_pred             chhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           13 KMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKE   92 (327)
Q Consensus        13 ~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~   92 (327)
                      +.+.|.++..-.+.+.++.+.+..+...|-..++.+..       .+.+++..+..|+.+...++.....+-.++..++.
T Consensus       126 ~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~-------e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~  198 (290)
T COG4026         126 RVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEA-------EYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKK  198 (290)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence            44556666666666666666666666665555555444       46666667777777777777777777777777777


Q ss_pred             HHHHHHHHHhhh-HHHHHHHHHHHHhc
Q 020385           93 KTGALDEKFSQT-EFDLVQSVQQNADL  118 (327)
Q Consensus        93 ~~~~l~~~l~~~-~~~i~~~~~e~~~L  118 (327)
                      +-.+|-..++-. .+.+..+..+--.|
T Consensus       199 r~~ELe~~~El~e~~~i~dl~~et~~l  225 (290)
T COG4026         199 RWDELEPGVELPEEELISDLVKETLNL  225 (290)
T ss_pred             HHHHhcccccchHHHHHHHHHHHHhcc
Confidence            777776665443 34455555544444

>PRK10884 SH3 domain-containing protein; Provisional

Probab=89.29  E-value=10  Score=33.03  Aligned_cols=36  Identities=11%  Similarity=0.225  Sum_probs=25.6

Q ss_pred             hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEV   51 (327)
Q Consensus        16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~   51 (327)
                      +...+.........++..++.++..+..++..+...
T Consensus        80 V~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~  115 (206)
T PRK10884         80 IPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNT  115 (206)
T ss_pred             EEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            455666667777777777777777777777776643

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=89.10  E-value=18  Score=33.30  Aligned_cols=20  Identities=10%  Similarity=0.067  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 020385          247 AFENVKLEMESKRQDLEARQ  266 (327)
Q Consensus       247 k~~~~~~e~~~~~~el~~~~  266 (327)
                      .+.+++..+.+...=+.+.+
T Consensus       277 EL~elqdkY~E~~~mL~EaQ  296 (306)
T PF04849_consen  277 ELQELQDKYAECMAMLHEAQ  296 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444443333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=88.72  E-value=11  Score=30.23  Aligned_cols=47  Identities=15%  Similarity=0.161  Sum_probs=20.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          220 QGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQ  266 (327)
Q Consensus       220 ~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~  266 (327)
                      ...+..+..........+......|...-..++.++..+...+....
T Consensus        72 ~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~  118 (132)
T PF07926_consen   72 QQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN  118 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444444444444444444444444444444444444

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=88.67  E-value=10  Score=29.85  Aligned_cols=86  Identities=17%  Similarity=0.343  Sum_probs=52.4

Q ss_pred             chhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------chhhHHHHHHHHHHHHHHHHHHH
Q 020385           13 KMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRER---------------ELPLVQEVDAKVKELRQTIQDLN   77 (327)
Q Consensus        13 ~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~---------------~e~~~~~l~~~~~eL~~~i~~l~   77 (327)
                      ...-|..+..+...+..++..+...+.+....++++..-...               ....+.++......|+.+|..|.
T Consensus        11 ~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLe   90 (119)
T COG1382          11 QLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLE   90 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566666666666666666666666666666665542111               11244566667777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 020385           78 KHQVSLRTTLNKLKEKTGALD   98 (327)
Q Consensus        78 ~~q~~l~~~~~~lk~~~~~l~   98 (327)
                      +....+..++..++.....+.
T Consensus        91 kQe~~l~e~l~eLq~~i~~~l  111 (119)
T COG1382          91 KQEEKLQERLEELQSEIQKAL  111 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            777777777766666655443

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=88.09  E-value=27  Score=33.94  Aligned_cols=79  Identities=18%  Similarity=0.225  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 020385           41 LNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNK---HQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNAD  117 (327)
Q Consensus        41 l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~---~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~  117 (327)
                      |..-|..++......+..+..|+-.+--|+..+.+|.-   +|..+..=++.||....+|.+.-...-..-..+..-..+
T Consensus       315 LNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqn  394 (527)
T PF15066_consen  315 LNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQN  394 (527)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHH
Confidence            45555555555555556666666666666666666554   377777778888888888877666555555555544444


Q ss_pred             ch
Q 020385          118 LR  119 (327)
Q Consensus       118 L~  119 (327)
                      |.
T Consensus       395 Lq  396 (527)
T PF15066_consen  395 LQ  396 (527)
T ss_pred             HH
Confidence            43

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=88.07  E-value=42  Score=36.12  Aligned_cols=96  Identities=20%  Similarity=0.248  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh---------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           31 RSELEDKISQLNAEIAAYNEVRER---------ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF  101 (327)
Q Consensus        31 ~~~l~~~~~~l~~~i~~~k~~~~~---------~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l  101 (327)
                      +..+..+|..|...+...+.+.+-         ++.+++.....+.++..++..+......++..+...-.-+..+..++
T Consensus       406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~  485 (1041)
T KOG0243|consen  406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEK  485 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            345666777777777776664432         33345556666666666666666666666666663333333444444


Q ss_pred             hhhHHHHHHHHHHHHhchhhhhcCH
Q 020385          102 SQTEFDLVQSVQQNADLRSKIVQSP  126 (327)
Q Consensus       102 ~~~~~~i~~~~~e~~~L~s~iv~sp  126 (327)
                      ..++..|.....++..+...+.+..
T Consensus       486 ~~~k~~L~~~~~el~~~~ee~~~~~  510 (1041)
T KOG0243|consen  486 EKLKSKLQNKNKELESLKEELQQAK  510 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444433333

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.94  E-value=16  Score=34.07  Aligned_cols=16  Identities=0%  Similarity=0.121  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHH
Q 020385          292 AKLQELASKAEEIVEK  307 (327)
Q Consensus       292 ~e~~~~~~~~~~L~~~  307 (327)
                      .||+++-..-..|-+.
T Consensus       169 ~EINAA~Gq~~LLL~~  184 (314)
T PF04111_consen  169 NEINAAWGQTALLLQT  184 (314)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444444333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=87.93  E-value=12  Score=29.57  Aligned_cols=43  Identities=19%  Similarity=0.207  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 020385          156 EKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSL  198 (327)
Q Consensus       156 ~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l  198 (327)
                      +.+..+..|+.+...++.+....+.++.++.-.+.+..++..+
T Consensus         7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l   49 (119)
T COG1382           7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKL   49 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4455566666677777777777777777766666655555544

>PRK10869 recombination and repair protein; Provisional

Probab=87.63  E-value=34  Score=34.56  Aligned_cols=24  Identities=13%  Similarity=-0.017  Sum_probs=9.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           26 RLDEQRSELEDKISQLNAEIAAYN   49 (327)
Q Consensus        26 ~l~~~~~~l~~~~~~l~~~i~~~k   49 (327)
                      .+...+..++.....+..++..+.
T Consensus       154 ~~~~~~~~~y~~~~~~~~~l~~l~  177 (553)
T PRK10869        154 SLLQEMRAAYQLWHQSCRDLAQHQ  177 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444433

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=87.59  E-value=36  Score=34.82  Aligned_cols=40  Identities=18%  Similarity=0.298  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020385           65 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT  104 (327)
Q Consensus        65 ~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~  104 (327)
                      ...++.+++..+.++-..+..+.+.++.+...|.+++...
T Consensus       403 l~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~  442 (961)
T KOG4673|consen  403 LREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAA  442 (961)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            3456667777777777777777777777777777766654

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=87.56  E-value=32  Score=34.29  Aligned_cols=70  Identities=10%  Similarity=0.267  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 020385          248 FENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKT-----------KFVKESGAAKLQELASKAEEIVEKFQQYTNSIG  316 (327)
Q Consensus       248 ~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i-----------~~~~~~~e~e~~~~~~~~~~L~~~~~~Y~~~l~  316 (327)
                      +..+..+...+++++...+.++.....++...+...           ..+...+...+.. +.++..+...+..|-+++.
T Consensus       276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~e~~l~~~el~~~~ee~~  354 (511)
T PF09787_consen  276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT-EAELRLYYQELYHYREELS  354 (511)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444443333333333333           3333333333333 4555555556666666655


Q ss_pred             cc
Q 020385          317 TL  318 (327)
Q Consensus       317 ~~  318 (327)
                      ..
T Consensus       355 ~~  356 (511)
T PF09787_consen  355 RQ  356 (511)
T ss_pred             Hh
Confidence            43

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PRK11281 hypothetical protein; Provisional

Probab=87.20  E-value=51  Score=36.19  Aligned_cols=56  Identities=11%  Similarity=0.137  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhc
Q 020385           69 LRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ  124 (327)
Q Consensus        69 L~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~  124 (327)
                      |++.+..........+..+..+......+....+.+...+.+....+..++.++..
T Consensus       126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~  181 (1113)
T PRK11281        126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG  181 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44444444555555555555555555555555555555555555555555554444

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=87.00  E-value=15  Score=29.98  Aligned_cols=8  Identities=13%  Similarity=0.239  Sum_probs=3.2

Q ss_pred             HHHHHhch
Q 020385          112 VQQNADLR  119 (327)
Q Consensus       112 ~~e~~~L~  119 (327)
                      ..++++|+
T Consensus       139 e~E~~kLk  146 (151)
T PF11559_consen  139 EREIEKLK  146 (151)
T ss_pred             HHHHHHHH
Confidence            33444443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=86.71  E-value=9.5  Score=27.26  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           27 LDEQRSELEDKISQLNAEIAAYNE   50 (327)
Q Consensus        27 l~~~~~~l~~~~~~l~~~i~~~k~   50 (327)
                      +..++..+-+.|..|+.++.+++.
T Consensus         9 LE~ki~~aveti~~Lq~e~eeLke   32 (72)
T PF06005_consen    9 LEEKIQQAVETIALLQMENEELKE   32 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=86.68  E-value=23  Score=34.85  Aligned_cols=89  Identities=15%  Similarity=0.118  Sum_probs=60.7

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           22 EDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF  101 (327)
Q Consensus        22 ~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l  101 (327)
                      .+.-.+.+.+..+.++++....++..+-..+......+..+.-+++++...|..+..-+..++.++..+.++..+....+
T Consensus       212 ~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~  291 (596)
T KOG4360|consen  212 TQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQML  291 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444555555666666666666666666677777778888888888888888888888888888877777766


Q ss_pred             hhhHHHHHH
Q 020385          102 SQTEFDLVQ  110 (327)
Q Consensus       102 ~~~~~~i~~  110 (327)
                      ......|..
T Consensus       292 ~EaeeELk~  300 (596)
T KOG4360|consen  292 HEAEEELKC  300 (596)
T ss_pred             HHHHHHHHh
Confidence            655544443

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=86.60  E-value=24  Score=31.83  Aligned_cols=55  Identities=9%  Similarity=0.069  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 020385          146 AEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLN  203 (327)
Q Consensus       146 ~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~  203 (327)
                      +++.-.....+++..--.+.-++..+..|.++++.+..++.+++.   ++...+....
T Consensus        79 lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~Ks---ELErsQ~~~~  133 (307)
T PF10481_consen   79 LEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKS---ELERSQQAAS  133 (307)
T ss_pred             HHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhc
Confidence            333333334778888888888999999999999999999999988   7777655544

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=86.14  E-value=11  Score=31.42  Aligned_cols=79  Identities=29%  Similarity=0.385  Sum_probs=52.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhHHHHHHHHHHHHhchhhhh-cCHHHHHHHHH
Q 020385           58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT--GALDEKFSQTEFDLVQSVQQNADLRSKIV-QSPEKLQRTLE  134 (327)
Q Consensus        58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~--~~l~~~l~~~~~~i~~~~~e~~~L~s~iv-~spe~lk~~le  134 (327)
                      .+..+..++.+|..++..+......+..++..+...-  .+|...+..+...+..+...+..|++-.. -||+.+.....
T Consensus        73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~  152 (169)
T PF07106_consen   73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEK  152 (169)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence            5667777777777777777777777777777776654  56677777777777777777777765332 35555554444


Q ss_pred             HH
Q 020385          135 EK  136 (327)
Q Consensus       135 ~l  136 (327)
                      ..
T Consensus       153 ~~  154 (169)
T PF07106_consen  153 EY  154 (169)
T ss_pred             HH
Confidence            43

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=85.83  E-value=25  Score=31.38  Aligned_cols=66  Identities=17%  Similarity=0.244  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHH
Q 020385           70 RQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEE  135 (327)
Q Consensus        70 ~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~  135 (327)
                      ...|.+|......|.+.....+.+..-+.-.++.......+....|..|+++...+.-.+.+.+-+
T Consensus       107 ~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llD  172 (330)
T KOG2991|consen  107 SDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLD  172 (330)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhC
Confidence            356667778888888888888888889999999999999999999999988877666666655443

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=85.80  E-value=11  Score=26.99  Aligned_cols=62  Identities=23%  Similarity=0.320  Sum_probs=33.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          212 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVD  277 (327)
Q Consensus       212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~  277 (327)
                      |+.++..+-..+..++..+..+.++...+..    ....+..+...++++.+....++..+.+.++
T Consensus         9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~----e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~   70 (72)
T PF06005_consen    9 LEEKIQQAVETIALLQMENEELKEKNNELKE----ENEELKEENEQLKQERNAWQERLRSLLGKLE   70 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4444444444455555555555555444444    4555556666666666666666665555443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=85.79  E-value=55  Score=35.18  Aligned_cols=31  Identities=32%  Similarity=0.460  Sum_probs=11.9

Q ss_pred             hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 020385           17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAA   47 (327)
Q Consensus        17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~   47 (327)
                      +.+...+.......+......+..+...+..
T Consensus       279 ~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~  309 (908)
T COG0419         279 LERLLEELEEKIERLEELEREIEELEEELEG  309 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=84.97  E-value=21  Score=31.20  Aligned_cols=62  Identities=15%  Similarity=0.254  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhh
Q 020385           62 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV  123 (327)
Q Consensus        62 l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv  123 (327)
                      +..++..+...+..+...-+....+++....+...+..+.+........+.++..+|+++|.
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~  210 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE  210 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence            44566666666666777777777777777777777777777777777777777777777664

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=84.70  E-value=23  Score=29.84  Aligned_cols=65  Identities=18%  Similarity=0.244  Sum_probs=32.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHH
Q 020385           58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL  129 (327)
Q Consensus        58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~l  129 (327)
                      .|.+++-+|..|...|.       .-..++..++.....-..-++.....+..+..++..++..+..-.+.+
T Consensus        43 DFeqLkien~~l~~kIe-------ERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~  107 (177)
T PF13870_consen   43 DFEQLKIENQQLNEKIE-------ERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEEL  107 (177)
T ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444333       333445555555555555555555555555555555554444444333

>PLN02939 transferase, transferring glycosyl groups

Probab=84.70  E-value=62  Score=34.85  Aligned_cols=127  Identities=19%  Similarity=0.212  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----------------HHHHHhchhhh
Q 020385           60 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQS-----------------VQQNADLRSKI  122 (327)
Q Consensus        60 ~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~-----------------~~e~~~L~s~i  122 (327)
                      ..+-.=+...+..|.-+|.-....-+++...-.++..|..++.-+.-.+.+.                 ....++|+.-+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (977)
T PLN02939        131 EDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNEL  210 (977)
T ss_pred             HHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhh
Confidence            3333344444444445555444444555555555666666555555555442                 22333333222


Q ss_pred             hcCHHH-------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385          123 VQSPEK-------LQRTLEEKKS----IREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKS  190 (327)
Q Consensus       123 v~spe~-------lk~~le~l~~----~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~  190 (327)
                      .+-...       |-..+..++.    .+..+..+....    .+...+-+.+..++++-+.+..-+.+++..+.....
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (977)
T PLN02939        211 LIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAEL----IEVAETEERVFKLEKERSLLDASLRELESKFIVAQE  285 (977)
T ss_pred             hccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            211110       3344444444    344455555555    666667777777777777777777777766655544

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.37  E-value=12  Score=26.32  Aligned_cols=29  Identities=21%  Similarity=0.336  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020385          161 LEVYQKTLKKMSKQSAQMQAILEQVNSAK  189 (327)
Q Consensus       161 ~e~~~~~e~el~~~~~~l~~~~~el~~~~  189 (327)
                      .++|.+++.+|......+.-++-++..++
T Consensus         3 lEv~ekLE~KiqqAvdTI~LLQmEieELK   31 (79)
T COG3074           3 LEVFEKLEAKVQQAIDTITLLQMEIEELK   31 (79)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555554444444443333

>PRK09343 prefoldin subunit beta; Provisional

Probab=83.45  E-value=20  Score=28.28  Aligned_cols=46  Identities=13%  Similarity=0.109  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 020385          154 FQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLK  199 (327)
Q Consensus       154 ~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~  199 (327)
                      ...++..+..|..+..++..+....+.+..++..++.+.+++..+.
T Consensus         6 ~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~   51 (121)
T PRK09343          6 PPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLP   51 (121)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3667778888899999999999999999999988888777887763

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=83.40  E-value=78  Score=35.01  Aligned_cols=9  Identities=11%  Similarity=0.560  Sum_probs=3.4

Q ss_pred             HHHHHHhHh
Q 020385          308 FQQYTNSIG  316 (327)
Q Consensus       308 ~~~Y~~~l~  316 (327)
                      +..|..-+.
T Consensus      1107 L~ky~~aLD 1115 (1294)
T KOG0962|consen 1107 LDKYYKALD 1115 (1294)
T ss_pred             HHHHHHHHH
Confidence            333433333

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=82.99  E-value=43  Score=33.78  Aligned_cols=24  Identities=17%  Similarity=0.231  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          264 ARQKKVEAVVTEVDAITSKTKFVK  287 (327)
Q Consensus       264 ~~~~~~~~~~~ei~~le~~i~~~~  287 (327)
                      .+++++.+....++.|+.+...++
T Consensus       485 ~L~~~L~e~~~~ve~L~~~l~~l~  508 (652)
T COG2433         485 RLEKELEEKKKRVEELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333344444444444433

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=82.94  E-value=45  Score=31.84  Aligned_cols=26  Identities=27%  Similarity=0.452  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           27 LDEQRSELEDKISQLNAEIAAYNEVR   52 (327)
Q Consensus        27 l~~~~~~l~~~~~~l~~~i~~~k~~~   52 (327)
                      +..+...+..++..+.+.+..+...+
T Consensus        79 ~~~~l~~l~~~~~~l~a~~~~l~~~~  104 (423)
T TIGR01843        79 VEADAAELESQVLRLEAEVARLRAEA  104 (423)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566667777777777776665543

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=82.93  E-value=40  Score=31.36  Aligned_cols=92  Identities=16%  Similarity=0.327  Sum_probs=48.8

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhh
Q 020385          218 ERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTE-------VDAITSKTKFVKESG  290 (327)
Q Consensus       218 e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~e-------i~~le~~i~~~~~~~  290 (327)
                      .+..+++.+..+...++..+..+.+    ...++..+.+..+......+.++.-+.+-       |+.+-.+-.-++   
T Consensus       130 ~lV~qLEk~~~q~~qLe~d~qs~lD----EkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~---  202 (319)
T PF09789_consen  130 DLVEQLEKLREQIEQLERDLQSLLD----EKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLK---  202 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHH---
Confidence            3333334444444444444444444    44444444455555555555554444411       223322222232   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 020385          291 AAKLQELASKAEEIVEKFQQYTNSIGT  317 (327)
Q Consensus       291 e~e~~~~~~~~~~L~~~~~~Y~~~l~~  317 (327)
                       ..+..++.+-..+...|.+|-..+..
T Consensus       203 -erl~q~qeE~~l~k~~i~KYK~~le~  228 (319)
T PF09789_consen  203 -ERLKQLQEEKELLKQTINKYKSALER  228 (319)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             45677888899999999999998873

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=82.34  E-value=29  Score=29.23  Aligned_cols=85  Identities=12%  Similarity=0.157  Sum_probs=43.0

Q ss_pred             HHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          194 DYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVV  273 (327)
Q Consensus       194 ~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~  273 (327)
                      +...+...|++++.++..|.........-+.+..+.+.....+...+..    .+......+..++.++......++...
T Consensus        50 en~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~----~l~~~~~~~~~~r~~l~~~k~~r~k~~  125 (177)
T PF13870_consen   50 ENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQ----ELKDREEELAKLREELYRVKKERDKLR  125 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555554445555555555555555555555555555555    455555555555555555554444444


Q ss_pred             HHHHHHHHH
Q 020385          274 TEVDAITSK  282 (327)
Q Consensus       274 ~ei~~le~~  282 (327)
                      .....+...
T Consensus       126 ~~~~~l~~~  134 (177)
T PF13870_consen  126 KQNKKLRQQ  134 (177)
T ss_pred             HHHHHHHHh
Confidence            444444433

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=82.12  E-value=56  Score=32.41  Aligned_cols=100  Identities=19%  Similarity=0.212  Sum_probs=66.9

Q ss_pred             hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA   96 (327)
Q Consensus        17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~   96 (327)
                      ..-+..+++.+..++............+-..+...+...+.....+..++....+.+..++   ..|...-..|+.....
T Consensus       415 k~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~Lq---DEL~TTr~NYE~QLs~  491 (518)
T PF10212_consen  415 KSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQ---DELETTRRNYEEQLSM  491 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHH
Confidence            4445566666666666666666666666666666655555555555555555555444443   3455556667888888


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhch
Q 020385           97 LDEKFSQTEFDLVQSVQQNADLR  119 (327)
Q Consensus        97 l~~~l~~~~~~i~~~~~e~~~L~  119 (327)
                      |.+.|..++..+..-..+|+.|+
T Consensus       492 MSEHLasmNeqL~~Q~eeI~~LK  514 (518)
T PF10212_consen  492 MSEHLASMNEQLAKQREEIQTLK  514 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888888888888888888886

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=82.07  E-value=21  Score=27.54  Aligned_cols=42  Identities=17%  Similarity=0.216  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 020385          157 KTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSL  198 (327)
Q Consensus       157 l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l  198 (327)
                      +...+..|+.+..++..+...+..+..++..+..+.+++..+
T Consensus         5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l   46 (110)
T TIGR02338         5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERL   46 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            455667788888888888888888888888888877777766

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=81.97  E-value=23  Score=27.96  Aligned_cols=11  Identities=18%  Similarity=0.350  Sum_probs=4.2

Q ss_pred             HHHHHHHHHHH
Q 020385          256 ESKRQDLEARQ  266 (327)
Q Consensus       256 ~~~~~el~~~~  266 (327)
                      .++.++.++.+
T Consensus        92 GEK~E~veEL~  102 (120)
T PF12325_consen   92 GEKSEEVEELR  102 (120)
T ss_pred             cchHHHHHHHH
Confidence            33333333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]

Probab=80.30  E-value=58  Score=31.39  Aligned_cols=106  Identities=25%  Similarity=0.345  Sum_probs=51.4

Q ss_pred             HHHHHHhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHH-------------------HHHHHHHHHHH-HHHHHhHH
Q 020385          183 EQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKV-------------------EQLDELQQQLE-KERNLKSE  242 (327)
Q Consensus       183 ~el~~~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~-------------------~~l~~~l~~~~-e~~~~~~~  242 (327)
                      .-++....+..++.++...+++.++++.+++..+..+..-.                   +.+..++.... +.....+.
T Consensus       276 ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd  355 (446)
T KOG4438|consen  276 EKVTNLQTIEKELKALLKKISSDGVEYDSLETKVVELKEILELEDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQD  355 (446)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555666666666666655443333333222111                   11112222222 34444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          243 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKE  288 (327)
Q Consensus       243 ~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~  288 (327)
                      -.+++..++.+..+.....++.+..+++++...+......|...+-
T Consensus       356 ~~~r~~E~v~~~md~~~~~~n~V~~kr~a~~~kie~~~~~ik~~e~  401 (446)
T KOG4438|consen  356 LENRKTESVKAMMDDNIEKYNVVRQKRNAKVKKIEEKNEEIKKIEL  401 (446)
T ss_pred             HHHhhHHHHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHHHHHh
Confidence            4444555555555566666666666666666555555555555444

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=80.25  E-value=24  Score=26.96  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 020385           29 EQRSELEDKISQLNAEIAAYNE   50 (327)
Q Consensus        29 ~~~~~l~~~~~~l~~~i~~~k~   50 (327)
                      +.+-.+..+...+..+++.++.
T Consensus        29 d~i~~ld~~~r~l~~~~e~lr~   50 (108)
T PF02403_consen   29 DEIIELDQERRELQQELEELRA   50 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	327
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	4e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 71.4 bits (175), Expect = 7e-14
 Identities = 40/255 (15%), Positives = 103/255 (40%), Gaps = 21/255 (8%)

Query: 17   LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDL 76
            +    E   +L  ++ +++ ++  L  ++      R++        D K+K++   I  +
Sbjct: 936  IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995

Query: 77   NKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK 136
                  L      L+E+   L    ++ E    +  +    L++K      +L+  L+++
Sbjct: 996  EDQNNKLTKERKLLEERVSDLTTNLAEEE----EKAKNLTKLKNKHESMISELEVRLKKE 1051

Query: 137  KSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYK 196
            +  R+E            ++         + + ++  Q A+++A L         E++ +
Sbjct: 1052 EKSRQELEKI-------KRKLEGESSDLHEQIAELQAQIAELKAQL------AKKEEELQ 1098

Query: 197  SLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEME 256
            +  ARL D+     +   K+ E +     + +LQ+ LE E+  +++ A +   ++  E+E
Sbjct: 1099 AALARLEDETSQKNNALKKIRELE---SHISDLQEDLESEKAARNK-AEKQKRDLSEELE 1154

Query: 257  SKRQDLEARQKKVEA 271
            + + +LE        
Sbjct: 1155 ALKTELEDTLDTTAT 1169

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 48/302 (15%), Positives = 122/302 (40%), Gaps = 33/302 (10%)

Query: 21   AEDLTRLDEQRSE-LEDKISQLNAEIAAYNEVRERELPLVQEVDAKV---KELRQTIQDL 76
               L  L+E+R   + D I    A+   Y   R+      Q++++       +R  +   
Sbjct: 777  TGVLAHLEEERDLKITDVIIAFQAQCRGYL-ARKAFAKRQQQLESIFCIQYNVRSFMNVX 835

Query: 77   NKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK 136
            +   + L   +  L + T   +E  ++ E  L ++ ++     +++ +  +K  +  EEK
Sbjct: 836  HWPWMXLFFXIXPLLKVTRQEEEMQAKDEE-LQRTKERQQKAEAELKELEQKHTQLCEEK 894

Query: 137  KSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYK 196
              ++E+ +   +L      E            +++ +   +M+A +E+       E+  +
Sbjct: 895  NLLQEKLQAETELY----AEAEEMRVRLAAKKQELEEILHEMEARIEE------EEERSQ 944

Query: 197  SLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKE--------RNLKSEDATRAF 248
             L+A         K ++ ++++ + ++E+ +  +Q+L+ E        + ++ +      
Sbjct: 945  QLQAEK-------KKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED 997

Query: 249  ENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF 308
            +N KL  E K   LE R   +   + E +        +K    + + EL  + ++  +  
Sbjct: 998  QNNKLTKERKL--LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR 1055

Query: 309  QQ 310
            Q+
Sbjct: 1056 QE 1057

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 6e-10
 Identities = 50/276 (18%), Positives = 98/276 (35%), Gaps = 68/276 (24%)

Query: 75  DLNKHQVSLRTTLNKLKEK-TGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTL 133
           +  +HQ   +  L+  ++      D K  Q   D+ +S+    ++   I+ S + +  TL
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQ---DMPKSILSKEEID-HIIMSKDAVSGTL 65

Query: 134 EEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQ--MQAILEQVNSAKSI 191
                              +   K    E+ QK ++++ + + +  M  I  +      +
Sbjct: 66  ---------------RLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108

Query: 192 EKDYKSLKARL-NDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNL---------KS 241
            + Y   + RL ND+ V  K      + R     +L +   +L   +N+         K+
Sbjct: 109 TRMYIEQRDRLYNDNQVFAK----YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 242 ---EDATRAFENVKLEME------------SKRQDLEARQK---KVEAVVTEVDAITSKT 283
               D   +++ V+ +M+            S    LE  QK   +++   T     +S  
Sbjct: 165 WVALDVCLSYK-VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 284 KFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLL 319
           K    S  A+L+ L      +  K   Y N    LL
Sbjct: 224 KLRIHSIQAELRRL------LKSK--PYENC---LL 248

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 1e-08
 Identities = 53/309 (17%), Positives = 93/309 (30%), Gaps = 92/309 (29%)

Query: 2   LLFPFLNLRDTKMNLLRPIAEDLTRLD----EQRSELEDKISQLNAEIAAYNEVRERELP 57
            L  F  L   +  +++   E++ R++        + E +   +   +  Y E R+R   
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM--YIEQRDR--- 118

Query: 58  LVQEVDAKVKELRQTIQDLNKHQVS-------LRTTLNKLKE-------------KT--- 94
                      L    Q   K+ VS       LR  L +L+              KT   
Sbjct: 119 -----------LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 95  --GALDEKFSQTEFD-----LVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAE 147
               L  K  Q + D     L      + +   +++Q   KL   ++   + R +     
Sbjct: 168 LDVCLSYKV-QCKMDFKIFWLNLKNCNSPETVLEMLQ---KLLYQIDPNWTSRSDHSSNI 223

Query: 148 KLAMQSFQEKTTTL---EVYQKTLKKMSKQSAQMQAILEQVNSAKSIEK-DYKSLKARLN 203
           KL + S Q +   L   + Y+  L            +L  V +AK+    +   L  +  
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCL-----------LVLLNVQNAKAWNAFN---LSCK-- 267

Query: 204 DDVVL----DKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKR 259
              +L     K +   L         LD     L  +                L+   + 
Sbjct: 268 ---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS------LLLKY-LDC--RP 315

Query: 260 QDL--EARQ 266
           QDL  E   
Sbjct: 316 QDLPREVLT 324

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 5e-08
 Identities = 48/281 (17%), Positives = 88/281 (31%), Gaps = 73/281 (25%)

Query: 10  RDTK-MNLLRPIAEDLTRLDEQRSEL-EDKISQLNAEIAAYNEVRERELP---------L 58
           R  +  + L         LD     L  D++  L   +  Y + R ++LP          
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL---LLKYLDCRPQDLPREVLTTNPRR 329

Query: 59  VQEVDAKVKELRQTIQ-----DLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV---Q 110
           +  +   +++   T       + +K    + ++LN L+       + F      L     
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE--YRKMF----DRLSVFPP 383

Query: 111 SVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEK-----TTTL-EVY 164
           S          I   P  L   +       +      KL   S  EK     T ++  +Y
Sbjct: 384 SA--------HI---PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 165 QKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKS---------------LKARLNDD---- 205
            +   K+  + A  ++I++  N  K+ + D                  LK   + +    
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 206 ---VVLDKS-LEAKLIE----RQGKVEQLDELQQQLEKERN 238
              V LD   LE K+             L+ L QQL+  + 
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTL-QQLKFYKP 532

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 41/243 (16%), Positives = 96/243 (39%), Gaps = 20/243 (8%)

Query: 33   ELEDKISQLNAEIAAYNEVRERELPLVQE---VDAKVKELRQTIQDLNKHQVSLRTTLNK 89
             L+  +            +RE +  ++Q+            +T++ +   Q   R  + K
Sbjct: 844  ALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAK 903

Query: 90   LKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKL 149
             + K   ++ +       + +  + +  L +KI+Q   K+    +E KS+ E+  + E  
Sbjct: 904  RELKKLKIEAR------SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE-- 955

Query: 150  AMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLD 209
                    +T  E  +  ++++     + +    +V    S++++   L+  L+      
Sbjct: 956  -----ITYSTETEKLRSDVERLRMSEEEAKNATNRV---LSLQEEIAKLRKELHQTQTEK 1007

Query: 210  KSLEAKLIERQGKVEQL-DELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKK 268
            K++E    + + + EQL  EL++Q    +  K E   R  +  K   E+  + L    K+
Sbjct: 1008 KTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQ 1067

Query: 269  VEA 271
            +E 
Sbjct: 1068 LEL 1070

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 36/212 (16%), Positives = 84/212 (39%), Gaps = 33/212 (15%)

Query: 26   RLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRT 85
            R    + EL+    +L  E  +    ++        ++ K+ +L++ I + NK   SL  
Sbjct: 898  RRMMAKRELK----KLKIEARSVERYKKLH----IGLENKIMQLQRKIDEQNKEYKSLLE 949

Query: 86   TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARD 145
             +N L+       EK       L  S ++  +  ++++   E++ +  +E    + E + 
Sbjct: 950  KMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009

Query: 146  AEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDD 205
             E+                     K   ++ Q+ + L++ N    ++ + + L  R++D 
Sbjct: 1010 IEEW------------------ADKYKHETEQLVSELKEQN--TLLKTEKEELNRRIHD- 1048

Query: 206  VVLDKSLEAKLIERQGKVEQLDELQQQLEKER 237
                K +   + ++   VE+  +L+  L  ER
Sbjct: 1049 --QAKEITETMEKKL--VEETKQLELDLNDER 1076

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 34/242 (14%), Positives = 85/242 (35%), Gaps = 24/242 (9%)

Query: 26   RLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRT 85
             L E +S +  K  +       Y+   +  + L       + +         K       
Sbjct: 861  MLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKREL------KKLKIEAR 914

Query: 86   TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARD 145
            ++ + K+    L+ K  Q +  + +  ++   L  K+           E+ +S  E  R 
Sbjct: 915  SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974

Query: 146  AEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDD 205
            +E+ A ++   +  +L+      ++++K   ++     +    K+IE+     K      
Sbjct: 975  SEEEA-KNATNRVLSLQ------EEIAKLRKELHQTQTEK---KTIEEWADKYKHETEQ- 1023

Query: 206  VVLDKSLEAKLIERQGKVEQ-LDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEA 264
                  L ++L E+   ++   +EL +++  +    +E   +       ++E    D   
Sbjct: 1024 ------LVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077

Query: 265  RQ 266
            R 
Sbjct: 1078 RY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 33/254 (12%), Positives = 88/254 (34%), Gaps = 21/254 (8%)

Query: 58   LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNAD 117
            +V++    +++    +Q L +  +        L+E    + +K  +    L +       
Sbjct: 830  VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGW--LARVHYHRTL 887

Query: 118  LRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQ------EKTTTLEVYQKTLKKM 171
                 +Q   +      E K ++ EAR  E+             +    ++   K  K +
Sbjct: 888  KAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSL 947

Query: 172  SKQSAQMQAILEQVNSA-KSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQ 230
             ++   ++          +S  +  +  +    +      SL+ ++ + + ++ Q    +
Sbjct: 948  LEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007

Query: 231  QQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDA-ITSKTKFVKES 289
            + +E+             +  K E E    +L+ +   ++    E++  I  + K + E+
Sbjct: 1008 KTIEEWA-----------DKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITET 1056

Query: 290  GAAKLQELASKAEE 303
               KL E   + E 
Sbjct: 1057 MEKKLVEETKQLEL 1070

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 8/139 (5%)

Query: 22   EDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQV 81
            ++   L E+ + LE   S    ++ +  E         +    +V  L++ I  L K   
Sbjct: 942  KEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001

Query: 82   SLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQ--------NADLRSKIVQSPEKLQRTL 133
              +T    ++E       +  Q   +L +            N  +  +  +  E +++ L
Sbjct: 1002 QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061

Query: 134  EEKKSIREEARDAEKLAMQ 152
             E+    E   + E+L  Q
Sbjct: 1062 VEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 18/127 (14%), Positives = 49/127 (38%), Gaps = 9/127 (7%)

Query: 12   TKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQ 71
            T+   LR   E L   +E+     +++  L  EIA   +   +     + ++    + + 
Sbjct: 960  TETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019

Query: 72   TIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQR 131
              + L      L+     LK +   L+ +      ++ +++++     +K      +L+ 
Sbjct: 1020 ETEQLVSE---LKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETK------QLEL 1070

Query: 132  TLEEKKS 138
             L +++ 
Sbjct: 1071 DLNDERL 1077

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 33/215 (15%), Positives = 71/215 (33%), Gaps = 18/215 (8%)

Query: 48   YNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFD 107
             N V  R    +  ++  V  + +    L + Q+ L   L KL++    + +        
Sbjct: 1889 QNYVTPRHY--LDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQK 1946

Query: 108  LVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKT 167
              +   +N     K+ Q  +  Q    ++K  RE     +    +   +K       +K 
Sbjct: 1947 NRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKA 2006

Query: 168  LKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLD 227
                  +              + +E     LK + ++ V    +LE  +   + +   L 
Sbjct: 2007 EPTGPLREE-----------VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLI 2055

Query: 228  ELQQQLEKERNL---KSEDATRAFENVKLEMESKR 259
               +Q++ E +    K + +    +N  L  E  R
Sbjct: 2056 RETEQIKTESSKVKNKVDRSIALLDN--LNSERGR 2088

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	327
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.27
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.18
2ve7_C	250	Kinetochore protein NUF2, kinetochore protein SPC;	98.38
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.57
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.34
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.11
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.54
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.26
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.23
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	94.95
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	94.9
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	94.64
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	94.55
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	94.55
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	94.42
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	94.41
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	94.39
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.36
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	94.1
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	93.87
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	93.74
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	93.52
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	92.79
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	92.55
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	92.46
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	92.2
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	92.19
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	91.98
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	91.72
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	91.26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.85
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	90.73
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	89.93
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	89.01
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	88.69
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	88.42
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	88.32
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	87.67
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	86.55
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	84.89
2oto_A	155	M protein; helical coiled coil, fibrinogen-binding	84.45
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	84.39
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	83.96
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	83.76
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	83.22
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	82.5
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	80.91
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	80.68
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	80.59
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	80.42
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	80.27

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.27  E-value=5.8e-07  Score=79.34  Aligned_cols=99  Identities=9%  Similarity=0.098  Sum_probs=43.7

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           20 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE   99 (327)
Q Consensus        20 l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~   99 (327)
                      +...+..+...+..+......+...+..+..........+..+...+..+...+..+......+...+..+......+..
T Consensus         4 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (284)
T 1c1g_A            4 IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEA   83 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHhhhHHHHHHHHHHHHhc
Q 020385          100 KFSQTEFDLVQSVQQNADL  118 (327)
Q Consensus       100 ~l~~~~~~i~~~~~e~~~L  118 (327)
                      .+..+...+..+..++..+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~  102 (284)
T 1c1g_A           84 DVASLNRRIQLFEEELDRA  102 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444443

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.18  E-value=1.7e-06  Score=76.31  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhH
Q 020385          292 AKLQELASKAEEIVEKFQQYTNSI  315 (327)
Q Consensus       292 ~e~~~~~~~~~~L~~~~~~Y~~~l  315 (327)
                      ..+..+...+..+...+..+.+.|
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~L  281 (284)
T 1c1g_A          258 DELYAQKLKYKAISEELDHALNDM  281 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334445555555555555554444

>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*

Probab=98.38  E-value=1.1e-07  Score=83.97  Aligned_cols=68  Identities=7%  Similarity=0.104  Sum_probs=48.3

Q ss_pred             cccchhhhhhhchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 020385            2 LLFPFLNLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKEL   69 (327)
Q Consensus         2 a~INf~~Free~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL   69 (327)
                      |||||++|||+++..|+++..+.+++..++.+++.++..++++|++++..+.+....+.-..+.+..|
T Consensus       128 alINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~ql  195 (250)
T 2ve7_C          128 GIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQL  195 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999998777765544333344444

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.57  E-value=0.035  Score=48.80  Aligned_cols=176  Identities=13%  Similarity=0.126  Sum_probs=77.0

Q ss_pred             HHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          108 LVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNS  187 (327)
Q Consensus       108 i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~  187 (327)
                      +..+..++.+|.+.+..-|..+...-..+......+..+...+       ...-..+..++.+|..+...+......+..
T Consensus        13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l-------~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~   85 (256)
T 3na7_A           13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEK-------LALKLQVSKNEQTLQDTNAKIASIQKKMSE   85 (256)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4444455555555555546554433333333333333332222       222233344455555555555555555544


Q ss_pred             HhhHHHHHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          188 AKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQK  267 (327)
Q Consensus       188 ~~~~~~~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~  267 (327)
                      .. ..+++.++..+++.       +......+...+..+...++.+.........    .+..++..+......++..  
T Consensus        86 v~-~~kE~~aL~kEie~-------~~~~i~~lE~eile~~e~ie~~~~~l~~~~~----~l~~~~~~l~~~~~~~~~~--  151 (256)
T 3na7_A           86 IK-SERELRSLNIEEDI-------AKERSNQANREIENLQNEIKRKSEKQEDLKK----EMLELEKLALELESLVENE--  151 (256)
T ss_dssp             CS-SSSHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--
T ss_pred             cC-CHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--
Confidence            33 13355555555555       4444444444444444444444443333333    3333333333322222221  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 020385          268 KVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF  308 (327)
Q Consensus       268 ~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~  308 (327)
                       +..+..++..+......+......   .+...|.+|+...
T Consensus       152 -~~e~~~e~~~l~~~r~~l~~~i~~---~lL~~Yerir~~~  188 (256)
T 3na7_A          152 -VKNIKETQQIIFKKKEDLVEKTEP---KIYSFYERIRRWA  188 (256)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHTSCH---HHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhC
Confidence             122223333444444444444333   4566777777643

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.34  E-value=0.05  Score=45.22  Aligned_cols=157  Identities=15%  Similarity=0.181  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 020385           28 DEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFD  107 (327)
Q Consensus        28 ~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~  107 (327)
                      ..........+..++..+.+...--.+.+.   ++.+++..+...+..+...-..|..++..+|.+......+...   .
T Consensus        16 k~~~~~~~q~~~~le~El~EFqesSrELE~---ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~---~   89 (189)
T 2v71_A           16 KELSMKYKQSFQEARDELVEFQEGSRELEA---ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYK---Q   89 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence            333344444555555555555543332222   2233444455555555555445555555544444443333111   2


Q ss_pred             HHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          108 LVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNS  187 (327)
Q Consensus       108 i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~  187 (327)
                      +..+..++..|+..    -+.          ....+..++...+..-+....+..++..++..+...+...--++.++.-
T Consensus        90 ~~~Lq~el~~l~~~----~~~----------l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E  155 (189)
T 2v71_A           90 VSVLEDDLSQTRAI----KEQ----------LHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE  155 (189)
T ss_dssp             HHHHHHHHHHHHHH----HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HHH----------HHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334443333211    011          2334444566666666666666677777777777777666666666653


Q ss_pred             HhhHHHHHHHHHHhhch
Q 020385          188 AKSIEKDYKSLKARLND  204 (327)
Q Consensus       188 ~~~~~~~~~~l~~~l~~  204 (327)
                      -......+.+|++++.+
T Consensus       156 Ke~l~~~~QRLkdE~rD  172 (189)
T 2v71_A          156 KESLLVSVQRLKDEARD  172 (189)
T ss_dssp             HHHHHCCC---------
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33222233344444444

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.11  E-value=0.12  Score=45.24  Aligned_cols=22  Identities=0%  Similarity=-0.019  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHH
Q 020385          276 VDAITSKTKFVKESGAAKLQEL  297 (327)
Q Consensus       276 i~~le~~i~~~~~~~e~e~~~~  297 (327)
                      +..++..+...+......+..+
T Consensus       134 l~~~~~~l~~~~~~~~~~~~e~  155 (256)
T 3na7_A          134 MLELEKLALELESLVENEVKNI  155 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.54  E-value=1.8  Score=50.44  Aligned_cols=34  Identities=15%  Similarity=0.253  Sum_probs=16.1

Q ss_pred             hHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHH
Q 020385           17 LRPIAEDLTRLDEQRS-ELEDKISQLNAEIAAYNE   50 (327)
Q Consensus        17 ~~~l~~~~e~l~~~~~-~l~~~~~~l~~~i~~~k~   50 (327)
                      |-++...+..+..+.+ ++......+..=+.++..
T Consensus      1897 yLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~e 1931 (3245)
T 3vkg_A         1897 YLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRD 1931 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555444333 455555555544444443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.26  E-value=1  Score=47.51  Aligned_cols=57  Identities=9%  Similarity=0.167  Sum_probs=35.7

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          212 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKK  268 (327)
Q Consensus       212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~  268 (327)
                      |+.++.++...+..+......+++....+..+++.++..++.+...++++++..+..
T Consensus       989 L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A          989 LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555566666666666666666666666666666777777777666666666633

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.23  E-value=6.5  Score=46.06  Aligned_cols=58  Identities=21%  Similarity=0.201  Sum_probs=26.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          212 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVV  273 (327)
Q Consensus       212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~  273 (327)
                      ++.++.....++...+..+..+.++++.+..    +++....+.+.+..+.+..+.+++...
T Consensus      2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~----~~~~~~~ek~~L~~e~~~~~~kl~rA~ 2076 (3245)
T 3vkg_A         2019 LENAANELKLKQDEIVATITALEKSIATYKE----EYATLIRETEQIKTESSKVKNKVDRSI 2076 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444    444444444444445444444444443

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=94.95  E-value=0.73  Score=33.68  Aligned_cols=74  Identities=16%  Similarity=0.236  Sum_probs=46.8

Q ss_pred             hhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           14 MNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNK   89 (327)
Q Consensus        14 ~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~   89 (327)
                      -..+..|.+...+..++++.|+.+|..|+.+|..+......  ....-....+.+|+..|..+......+..+++.
T Consensus         8 Ke~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~--~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn   81 (93)
T 3s4r_A            8 KVELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKS--RLGDLYEEEMRELRRQVDQLTNDKARVEVERDN   81 (93)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677899999999999999999999999999988764211  111112334444444444444444444444333

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=94.90  E-value=1.2  Score=35.69  Aligned_cols=112  Identities=18%  Similarity=0.261  Sum_probs=87.4

Q ss_pred             chhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 020385           13 KMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQ-DLNKHQVSLRTTLNKLK   91 (327)
Q Consensus        13 ~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~-~l~~~q~~l~~~~~~lk   91 (327)
                      ++..|.....++..+...+.....++..|...+..-+..+..-+.....+..++.+|...|. +-|+.-..-+.....++
T Consensus        35 ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e  114 (154)
T 2ocy_A           35 AIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIE  114 (154)
T ss_dssp             HHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555666666666677777888888888888888888888899999999999999998 56666666666677778


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhc
Q 020385           92 EKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ  124 (327)
Q Consensus        92 ~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~  124 (327)
                      .+...|...+.+....+..+......|+.-+..
T Consensus       115 ~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~  147 (154)
T 2ocy_A          115 ILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHS  147 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888765544

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=94.64  E-value=1.4  Score=35.58  Aligned_cols=56  Identities=13%  Similarity=0.163  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 020385          247 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE  302 (327)
Q Consensus       247 k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i~~~~~~~e~e~~~~~~~~~  302 (327)
                      ++..+..+++.++..+.........+...+..++.+.+++.-+..-+++.+...|.
T Consensus        98 ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e  153 (168)
T 3o0z_A           98 RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE  153 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            44445555555555554444444444455555555555554444444444444443

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=94.42  E-value=1.1  Score=33.26  Aligned_cols=64  Identities=16%  Similarity=0.222  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhh
Q 020385           59 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI  122 (327)
Q Consensus        59 ~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~i  122 (327)
                      +.........+...+..+++....+..+++.+..........++........+..++..|.-+|
T Consensus        32 ~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri   95 (101)
T 3u1c_A           32 KKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444555555555555556666666666666666777777666676777777665554

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=94.41  E-value=1.3  Score=34.27  Aligned_cols=72  Identities=14%  Similarity=0.228  Sum_probs=36.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          212 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKT  283 (327)
Q Consensus       212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i  283 (327)
                      |+.++.-+.+....++..+.........-..+.+..+..++.++..++.++...-+....+.+---.+..+|
T Consensus        48 L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EI  119 (129)
T 3tnu_B           48 LRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEI  119 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444446666666666666666665555555544333333333

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=94.39  E-value=1.4  Score=34.31  Aligned_cols=72  Identities=10%  Similarity=0.171  Sum_probs=36.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          212 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKT  283 (327)
Q Consensus       212 l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~~ei~~le~~i  283 (327)
                      |+.++.-+.+....++..+.........-..+.+..+..++.++..++.++...-+....+.+---.+..+|
T Consensus        50 L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EI  121 (131)
T 3tnu_A           50 LEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEI  121 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444446666666666666666665555555543333333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=94.36  E-value=2  Score=45.29  Aligned_cols=29  Identities=17%  Similarity=0.182  Sum_probs=0.4

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhchhhh
Q 020385           94 TGALDEKFSQTEFDLVQSVQQNADLRSKI  122 (327)
Q Consensus        94 ~~~l~~~l~~~~~~i~~~~~e~~~L~s~i  122 (327)
                      +..|..++..+...+.....+...|...+
T Consensus       923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~  951 (1080)
T 2dfs_A          923 HIGLENKIMQLQRKIDEQNKEYKSLLEKM  951 (1080)
T ss_dssp             ----------------------------C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444433

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=94.10  E-value=1.9  Score=34.86  Aligned_cols=100  Identities=12%  Similarity=0.152  Sum_probs=57.0

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           21 AEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEK  100 (327)
Q Consensus        21 ~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~  100 (327)
                      ..+.+++.+.++.-.+....+.....++.......+..+.+++..+..|...-..+.+....|+..+..=+.......+-
T Consensus        12 ekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~   91 (168)
T 3o0z_A           12 QKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEM   91 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555555555555555555555555566665555555555555555555555555556666


Q ss_pred             HhhhHHHHHHHHHHHHhchh
Q 020385          101 FSQTEFDLVQSVQQNADLRS  120 (327)
Q Consensus       101 l~~~~~~i~~~~~e~~~L~s  120 (327)
                      +.++...+..+..++++++.
T Consensus        92 ~~elq~ri~~L~~El~~~k~  111 (168)
T 3o0z_A           92 IGDLQARITSLQEEVKHLKH  111 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666643

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=93.87  E-value=1.4  Score=32.56  Aligned_cols=64  Identities=22%  Similarity=0.295  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhh
Q 020385           59 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI  122 (327)
Q Consensus        59 ~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~i  122 (327)
                      +.........+...+..++++...+..++..+..........++........+..++..|.-+|
T Consensus        32 ~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri   95 (101)
T 3u59_A           32 KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555556666666666677777777777777777788887777777777877776555

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=93.74  E-value=2.5  Score=34.95  Aligned_cols=35  Identities=11%  Similarity=0.194  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhch
Q 020385          167 TLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLND  204 (327)
Q Consensus       167 ~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~~~l~~  204 (327)
                      ++++|..+-+...++...+..+..   ++..++.++..
T Consensus        47 LE~eL~~~Ek~~~~L~~~~~~L~~---E~e~~k~K~~~   81 (189)
T 2v71_A           47 LEAQLVQAEQRNRDLQADNQRLKY---EVEALKEKLEH   81 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            344555555555555555544444   44444444433

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=93.52  E-value=1.3  Score=31.27  Aligned_cols=66  Identities=26%  Similarity=0.380  Sum_probs=35.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020385           25 TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT  104 (327)
Q Consensus        25 e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~  104 (327)
                      +.+..++.++-+.|.-|+.++++++.              ++..|.+....+......|..+...++.+...+...|..+
T Consensus         9 eqLE~KIq~avdtI~lLqmEieELKe--------------kN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L   74 (81)
T 2jee_A            9 EKLEAKVQQAIDTITLLQMEIEELKE--------------KNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555566666666655555              4444444444444555555555555555555555555443

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=92.79  E-value=0.96  Score=35.13  Aligned_cols=25  Identities=4%  Similarity=-0.001  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          155 QEKTTTLEVYQKTLKKMSKQSAQMQ  179 (327)
Q Consensus       155 ~~l~~~~e~~~~~e~el~~~~~~l~  179 (327)
                      ++++.+.++-..+..+|.-|.++|+
T Consensus       103 ~EYq~LlnvKl~Ld~EIatYRkLLE  127 (129)
T 3tnu_B          103 REYQELMNTKLALDVEIATYRKLLE  127 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHC
Confidence            7788888888888888888887764

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=92.55  E-value=1.5  Score=34.16  Aligned_cols=25  Identities=16%  Similarity=0.212  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          155 QEKTTTLEVYQKTLKKMSKQSAQMQ  179 (327)
Q Consensus       155 ~~l~~~~e~~~~~e~el~~~~~~l~  179 (327)
                      ++++.+.++-..+..+|+-|.++|+
T Consensus       105 ~EYq~Ll~vKl~Ld~EIatYRkLLE  129 (131)
T 3tnu_A          105 QEYKILLDVKTRLEQEIATYRRLLE  129 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHC
Confidence            7888888888888889988888775

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=92.46  E-value=2  Score=30.31  Aligned_cols=39  Identities=21%  Similarity=0.365  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhch
Q 020385           81 VSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR  119 (327)
Q Consensus        81 ~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~  119 (327)
                      ..|+-++..+|.+...+..+...+......+..++.+|+
T Consensus        23 ~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk   61 (81)
T 2jee_A           23 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK   61 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            333334444444444444444443333333333333333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=92.20  E-value=3.7  Score=32.81  Aligned_cols=110  Identities=18%  Similarity=0.137  Sum_probs=59.0

Q ss_pred             HHHHHHHhhchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          194 DYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVV  273 (327)
Q Consensus       194 ~~~~l~~~l~~~~~~~k~l~~~~~e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~~~~~~~~  273 (327)
                      .+..+...|...+..+|+|+..-.....+-.....++..+..++.....    +.......+..+-..++..+..+....
T Consensus        43 k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~----RAE~AERsv~kLEk~id~lEd~L~~~K  118 (155)
T 2efr_A           43 KSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAET----RAEFAERSVTKLEKSIDDLEDELYAQK  118 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555556665555555555555555555554444444    444444444444445555555555554


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 020385          274 TEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQY  311 (327)
Q Consensus       274 ~ei~~le~~i~~~~~~~e~e~~~~~~~~~~L~~~~~~Y  311 (327)
                      ..+..+...++.    .=.++..+...||-|.+.|...
T Consensus       119 ek~~~i~~eLd~----tl~el~~~~~~~~~~~~~~~~~  152 (155)
T 2efr_A          119 LKYKAISEEMKQ----LEDKVEELLSKNYHLENEVARL  152 (155)
T ss_dssp             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HHHHHHhcccchHHHHHHHHHh
Confidence            555555555553    2245555677777777766543

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=92.19  E-value=3.7  Score=32.81  Aligned_cols=99  Identities=15%  Similarity=0.226  Sum_probs=56.7

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           21 AEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEK  100 (327)
Q Consensus        21 ~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~  100 (327)
                      ..+.....+.-+..++++..++..++........-+..+.++..++...-+.+..+...-.....+-..|......|..+
T Consensus         6 E~qlkeaae~ad~KyeEvaR~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~k   85 (155)
T 2efr_A            6 EDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDK   85 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            33333334444555555565666666665555555555556666666655555555555555555566666666666666


Q ss_pred             HhhhHHHHHHHHHHHHhch
Q 020385          101 FSQTEFDLVQSVQQNADLR  119 (327)
Q Consensus       101 l~~~~~~i~~~~~e~~~L~  119 (327)
                      +..+......+...+..|.
T Consensus        86 LKEAE~RAE~AERsv~kLE  104 (155)
T 2efr_A           86 LKEAETRAEFAERSVTKLE  104 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6666666555555555553

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=91.98  E-value=2.8  Score=30.96  Aligned_cols=23  Identities=22%  Similarity=0.276  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Q 020385          168 LKKMSKQSAQMQAILEQVNSAKS  190 (327)
Q Consensus       168 e~el~~~~~~l~~~~~el~~~~~  190 (327)
                      .+.|..+....+.+......++.
T Consensus         8 KkKm~~lk~e~e~a~drae~~e~   30 (101)
T 3u1c_A            8 KKKMQMLKLDKENALDRAEQAEA   30 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444333333

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=91.72  E-value=0.7  Score=36.03  Aligned_cols=108  Identities=19%  Similarity=0.282  Sum_probs=70.9

Q ss_pred             chhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 020385           13 KMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQ-DLNKHQVSLRTTLNKLK   91 (327)
Q Consensus        13 ~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~-~l~~~q~~l~~~~~~lk   91 (327)
                      ++.-|..+..++..+......+..++..|...+..-+..+..-+.....+..++.+|...+. +.|+.-..-+.....++
T Consensus        23 ~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e  102 (135)
T 2e7s_A           23 AIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIE  102 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555577777778888888777888888889999999999999998 55666555666667777


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhchh
Q 020385           92 EKTGALDEKFSQTEFDLVQSVQQNADLRS  120 (327)
Q Consensus        92 ~~~~~l~~~l~~~~~~i~~~~~e~~~L~s  120 (327)
                      .+...|...+.+....|..+......|+.
T Consensus       103 ~r~~~L~~ql~e~e~ll~~lq~QL~~LK~  131 (135)
T 2e7s_A          103 ILNKRLTEQLREKDMLLDTLTLQLKNLKK  131 (135)
T ss_dssp             HHHHHHHHTTTHHHHCC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777887777777777777776654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=91.26  E-value=1.7  Score=42.40  Aligned_cols=27  Identities=15%  Similarity=-0.069  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385           92 EKTGALDEKFSQTEFDLVQSVQQNADL  118 (327)
Q Consensus        92 ~~~~~l~~~l~~~~~~i~~~~~e~~~L  118 (327)
                      .....+..++......+.....+++..
T Consensus       463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~  489 (597)
T 3oja_B          463 AEVQQLTNEQIQQEQLLQGLHAEIDTN  489 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            333333333333333444444444333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.85  E-value=6.3  Score=38.29  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=7.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHH
Q 020385           25 TRLDEQRSELEDKISQLNAEI   45 (327)
Q Consensus        25 e~l~~~~~~l~~~~~~l~~~i   45 (327)
                      ..+.++.......+.....++
T Consensus       466 ~~l~~~~~~~~~~l~~~~~~i  486 (597)
T 3oja_B          466 QQLTNEQIQQEQLLQGLHAEI  486 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            333333333333333333333

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=90.73  E-value=3.7  Score=29.98  Aligned_cols=87  Identities=20%  Similarity=0.331  Sum_probs=56.7

Q ss_pred             hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 020385           17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQ-DLNKHQVSLRTTLNKLKEKTG   95 (327)
Q Consensus        17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~-~l~~~q~~l~~~~~~lk~~~~   95 (327)
                      |..+..++..+..+......++..|...+..-+..+..-+.....+..++.+|...|. +-|+.-..-+.....+..+..
T Consensus         7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~   86 (97)
T 2eqb_B            7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNK   86 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555566666666666666666667777777777777777788888888999988888 445444444444455555555


Q ss_pred             HHHHHHhh
Q 020385           96 ALDEKFSQ  103 (327)
Q Consensus        96 ~l~~~l~~  103 (327)
                      .|..+|.+
T Consensus        87 ~L~~qL~d   94 (97)
T 2eqb_B           87 RLTEQLRE   94 (97)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            55555443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=89.93  E-value=5.5  Score=30.72  Aligned_cols=89  Identities=12%  Similarity=0.183  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 020385           30 QRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV  109 (327)
Q Consensus        30 ~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~  109 (327)
                      .+.....++..+...+......+...+.....+..+.+.|...+..-.....-....+..+...+..|-..+..+...+.
T Consensus        14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rle   93 (129)
T 2fxo_A           14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLE   93 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444445555555555555544444444455555555555555555555555555


Q ss_pred             HHHHHHHhc
Q 020385          110 QSVQQNADL  118 (327)
Q Consensus       110 ~~~~e~~~L  118 (327)
                      .....+..|
T Consensus        94 eeee~~~~L  102 (129)
T 2fxo_A           94 DEEEMNAEL  102 (129)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555444

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=89.01  E-value=5.4  Score=29.35  Aligned_cols=12  Identities=17%  Similarity=0.476  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHH
Q 020385          274 TEVDAITSKTKF  285 (327)
Q Consensus       274 ~ei~~le~~i~~  285 (327)
                      +++..++..|..
T Consensus        86 ~evasLnRriql   97 (101)
T 3u59_A           86 AEVASLNRRIQL   97 (101)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            344444444443

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=88.69  E-value=5.6  Score=29.07  Aligned_cols=62  Identities=13%  Similarity=0.250  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchh
Q 020385           59 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS  120 (327)
Q Consensus        59 ~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s  120 (327)
                      -..+..++..++.....+...-...-.+++.++-......+++..+...+.......++|+.
T Consensus        34 ~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K   95 (96)
T 3q8t_A           34 RKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKK   95 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33444444455555555555555555566666667777777777777777777777777653

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=88.42  E-value=13  Score=35.47  Aligned_cols=31  Identities=16%  Similarity=0.121  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          146 AEKLAMQSFQEKTTTLEVYQKTLKKMSKQSA  176 (327)
Q Consensus       146 ~e~~~~~~~~~l~~~~e~~~~~e~el~~~~~  176 (327)
                      .++.+.....+++..++.+.+..+++..+.+
T Consensus        58 qErDltkrINELKnqLEdlsKnsKdseqy~k   88 (562)
T 3ghg_A           58 VNQDFTNRINKLKNSLFEYQKNNKDSHSLTT   88 (562)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHhhchhHHHHHH
Confidence            3333333345555555555555555555443

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=88.32  E-value=7.5  Score=30.75  Aligned_cols=66  Identities=18%  Similarity=0.186  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           85 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLA  150 (327)
Q Consensus        85 ~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~spe~lk~~le~l~~~~~~l~~~e~~~  150 (327)
                      .++............+|..+.....+...-+..|..+-..+.+++...=..++..+......++++
T Consensus        10 eeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKy   75 (147)
T 2b9c_A           10 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKY   75 (147)
T ss_dssp             -CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            333333444444455555555555554444555555555555554443333444444334444433

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=87.67  E-value=5.7  Score=28.73  Aligned_cols=85  Identities=19%  Similarity=0.165  Sum_probs=49.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020385           25 TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT  104 (327)
Q Consensus        25 e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~  104 (327)
                      +.+..++.....-....+..|.+++..+......+    ..+.-|++++.-|...-.+-+.....+..++..|...+..+
T Consensus         5 ~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~----E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~l   80 (94)
T 3jsv_C            5 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL   80 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            34444444444444555555555555433222222    46777888888888887777777777777777777766666


Q ss_pred             HHHHHHHHH
Q 020385          105 EFDLVQSVQ  113 (327)
Q Consensus       105 ~~~i~~~~~  113 (327)
                      ...+..+..
T Consensus        81 q~q~~~L~~   89 (94)
T 3jsv_C           81 QREFNKLKV   89 (94)
T ss_dssp             HHTTC----
T ss_pred             HHHHHHHHH
Confidence            555544443

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=86.55  E-value=7  Score=27.89  Aligned_cols=14  Identities=29%  Similarity=0.427  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHHH
Q 020385          251 VKLEMESKRQDLEA  264 (327)
Q Consensus       251 ~~~e~~~~~~el~~  264 (327)
                      ++..+..++..++.
T Consensus        47 ~E~d~~~LrkdvD~   60 (86)
T 3swk_A           47 AENTLQSFRQDVDN   60 (86)
T ss_dssp             HHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHhhHHH
Confidence            33333444443333

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=84.89  E-value=13  Score=29.42  Aligned_cols=61  Identities=11%  Similarity=0.071  Sum_probs=37.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385           58 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL  118 (327)
Q Consensus        58 ~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L  118 (327)
                      .+..++.++..+..+|..+..........+..+.++...|.-++..+...+..+..|...|
T Consensus        69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L  129 (152)
T 3a7p_A           69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL  129 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555555555666666666666666666666666666666

>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M

Probab=84.45  E-value=14  Score=29.37  Aligned_cols=49  Identities=12%  Similarity=0.167  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 020385           32 SELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQ   80 (327)
Q Consensus        32 ~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q   80 (327)
                      ..|...+..+...+..+........+.+..|...+..|...+..+....
T Consensus        32 ~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~   80 (155)
T 2oto_A           32 KDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDY   80 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444433333333333444555566666666665555555443

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=84.39  E-value=11  Score=28.12  Aligned_cols=45  Identities=16%  Similarity=0.142  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 020385          155 QEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLK  199 (327)
Q Consensus       155 ~~l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~  199 (327)
                      .+.+..+..|..+...+..+...+..+..++..+..+..++..+.
T Consensus         6 ~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~   50 (117)
T 2zqm_A            6 PQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLP   50 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            356677788899999999999999999999988888777777663

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=83.96  E-value=12  Score=28.43  Aligned_cols=44  Identities=5%  Similarity=0.079  Sum_probs=20.0

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 020385          218 ERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQD  261 (327)
Q Consensus       218 e~~~~~~~l~~~l~~~~e~~~~~~~~~~~k~~~~~~e~~~~~~e  261 (327)
                      .|...+..+...++.+.-+...+..++...+..++.++..-+..
T Consensus        19 ~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~   62 (120)
T 3i00_A           19 RLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHL   62 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444555555555444433

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=83.76  E-value=9.2  Score=26.83  Aligned_cols=45  Identities=20%  Similarity=0.280  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020385           59 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ  103 (327)
Q Consensus        59 ~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~  103 (327)
                      +.........+...+..++++...+..++..+.........+|+.
T Consensus        29 l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee   73 (81)
T 1ic2_A           29 KKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL   73 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444555555555555555555555555555555544

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=83.22  E-value=10  Score=27.00  Aligned_cols=58  Identities=17%  Similarity=0.362  Sum_probs=36.6

Q ss_pred             hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 020385           17 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQ   74 (327)
Q Consensus        17 ~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~   74 (327)
                      +.+|..+.+.+......+..++..+...+.+++.+...+-..-..+..++..|+.-+.
T Consensus         2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD   59 (86)
T 3swk_A            2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD   59 (86)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            3566677777777777777777777777777777666555555555555554444333

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=82.50  E-value=10  Score=26.50  Aligned_cols=63  Identities=19%  Similarity=0.177  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhchhhhhc
Q 020385           62 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ  124 (327)
Q Consensus        62 l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L~s~iv~  124 (327)
                      ...+...|-++|+.+.-...-+..+-.+|..+...-..+|..+...+..-..++.+|.++++.
T Consensus        17 ~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~   79 (81)
T 3qh9_A           17 KQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLSR   79 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence            334445566666666666666666666666666666677778888888888888888777654

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=80.91  E-value=5.8  Score=26.50  Aligned_cols=44  Identities=16%  Similarity=0.296  Sum_probs=29.6

Q ss_pred             hhhhhhchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385            7 LNLRDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE   50 (327)
Q Consensus         7 ~~Free~~~~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~   50 (327)
                      .+||.-+..-+..+..+.+.+......|...+..|+.++..++.
T Consensus        15 ~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~   58 (63)
T 1ci6_A           15 TRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD   58 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46776666677777777777766666666666666666666654

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=80.68  E-value=10  Score=29.43  Aligned_cols=33  Identities=15%  Similarity=0.079  Sum_probs=14.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385          234 EKERNLKSEDATRAFENVKLEMESKRQDLEARQ  266 (327)
Q Consensus       234 ~e~~~~~~~~~~~k~~~~~~e~~~~~~el~~~~  266 (327)
                      -++.+.+....++....++.....+...+...+
T Consensus        84 FeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e  116 (135)
T 2e7s_A           84 FDEANNLVADARMEKYAIEILNKRLTEQLREKD  116 (135)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=80.59  E-value=15  Score=27.24  Aligned_cols=81  Identities=21%  Similarity=0.216  Sum_probs=50.9

Q ss_pred             hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020385           16 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTG   95 (327)
Q Consensus        16 ~~~~l~~~~e~l~~~~~~l~~~~~~l~~~i~~~k~~~~~~e~~~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~   95 (327)
                      .++.|........+.+.....++..+..++...+...           ..+.-|++++.-|...-.+-+..-..+-.++.
T Consensus        25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l-----------E~I~vLkaQv~IY~~DF~aERadREkl~~eKe   93 (110)
T 2v4h_A           25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM-----------ETVPVLKAQADIYKADFQAERHAREKLVEKKE   93 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHccchhhHHHHHhHHH
Confidence            3566666666666666666666666666555543322           25777788888888877777777666666666


Q ss_pred             HHHHHHhhhHHH
Q 020385           96 ALDEKFSQTEFD  107 (327)
Q Consensus        96 ~l~~~l~~~~~~  107 (327)
                      .|..+++.+...
T Consensus        94 ~L~~ql~~Lq~q  105 (110)
T 2v4h_A           94 YLQEQLEQLQRE  105 (110)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666554433

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=80.42  E-value=16  Score=27.21  Aligned_cols=40  Identities=15%  Similarity=0.056  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385           79 HQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL  118 (327)
Q Consensus        79 ~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L  118 (327)
                      .-.....+...=.....++..+++.+...+..+..++..|
T Consensus        70 Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l  109 (110)
T 2v4h_A           70 QADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL  109 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence            3333333333334445556666666666555555555444

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=80.27  E-value=13  Score=26.09  Aligned_cols=60  Identities=17%  Similarity=0.313  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 020385           59 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL  118 (327)
Q Consensus        59 ~~~l~~~~~eL~~~i~~l~~~q~~l~~~~~~lk~~~~~l~~~l~~~~~~i~~~~~e~~~L  118 (327)
                      ++.+..+|.+|+.++..++.....-..+-..++.+...+.+.|.-.-+.+..+.+.+.+|
T Consensus        15 lq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL   74 (79)
T 3cvf_A           15 VQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL   74 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            344444444444444444444444444444444444555555555555555555555444

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	327
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	87.97

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.97  E-value=2.3  Score=29.89  Aligned_cols=43  Identities=16%  Similarity=0.179  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 020385          157 KTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLK  199 (327)
Q Consensus       157 l~~~~e~~~~~e~el~~~~~~l~~~~~el~~~~~~~~~~~~l~  199 (327)
                      +...+..|..+..++..+...+..+..++.-+..+..++..+.
T Consensus         3 lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~   45 (107)
T d1fxka_           3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAA   45 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4566777888888999999999999998888888777777664