Citrus Sinensis ID: 020414

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
Protein Sequence
MLLLICIILLISRNMKVTGSVKGHFFHFLLINILTQNYLLCLQARLGGEDIGYSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGGDDAPDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLSTNRIVELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQIVQELPPMEALLSKLER
Secondary Structure (PSIPRED)
cHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccEEEEccccEEEHHHHcccccEEEEEccHHHHHHHHHHHHHHHHHHHHccEEEEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHccccccccEEEEEEEccEEEEcccccccHHHHHHcccccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccEEEHHHHccccEEEEEEccHHHHHHHHHHHHHHHHHHHHccEEEEEEEccccccccccccccccccHHHcccccccccHHHHHHHHHHHHHccccccEEEccccHHHHHHHHHHHHHHccccccccEEEEEEcccEEEccccccccHHHHHHHccccHHHHccccc
Coil and Loop (DISEMBL)
MLLLICIILLISRnmkvtgsvkghFFHFLLINILTQNYLLCLQARlggedigySFRRDLKligevqapfrgVRRFFSVALSAAAGISLFFTVPRLLRaieggddapdLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQISRdetlsrlplrlsTNRIVELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVllvpviwgegrapqvekkgfglapkaaaalpsIGEDFEKRAQSITAKSKLKSEIRfkaevvspsewERWIRDqqksegvtpgedVYIILRLDgrvrrsgkgmpdwqQIVQELPPMEALLSKLER
Flexible Loop (DISEMBL)
MLLLICIILLISRNMKVTGSVKGHFFHFLLINILTQNYLLCLQARLGGEDIGYSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGGDDAPDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAqisrdetlsrlplrlstnrivelvqlrgtvrpvilagrketvSLAIQKAerfrtdllrrgvllvpviwgegrapqvekkgfGLAPKAAAALPSIGEDFEKRAQSItaksklkseirfkaevvspsewerwirdqqksegvtpgedvyIILRLDGRVRRSGKgmpdwqqivqelppmeallskler
Low Complexity Region (SEG)
MllliciilliSRNMKVTGSVKGHFFHFLLINILTQNYLLCLQARLGGEDIGYSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGGDDAPDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLSTNRIVELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQIVQELPPMEALLSKLER
Disordered region (IsUnstruct)
*LLLICIILLISRNMKVTGSVKGHFFHFLLINILTQNYLLCLQARLGGEDIGYSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGGDDAPDLIETAENLAINIGGIIVFITLFLWDNK**************LSRLPLRLSTNRIVELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVE*KGFGL*********************************F*AEVVSPSEWERWIR*******VTPGEDVYIILRLDGRVR****************************
Disordered Region (DISOPRED)
MLLLICIILLISRNMKVTGSVKGHFFHFLLINILTQNY*********************KLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIE***D**DLIETAENLAINIGGIIVFITLFLW******************************V*LVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEG******************************************EIRFKAEVVSPSEWERWIRDQ***********VYIILRLDGRVRRSGKGMPDWQQIVQELPPMEALLSKL**
Disordered Region (DISEMBL)
MLLLICIILLISRNMKVTGSVKGHFFHFLLINILTQNYLLCLQARLGGEDIGYSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGGDDAPDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLSTNRIVELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQIVQELPPMEALLSKLER
Disordered Region (DISPRO)
MLLLICIILLISRNMKVTGSVKGHFFHFLLINILTQNYLLCLQARLGGEDIGYSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGGDDAPDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLSTNRIVELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEG***********************************AKS**KSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQIVQELPPMEALLSKL**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLLICIILLISRNMKVTGSVKGHFFHFLLINILTQNYLLCLQARLGGEDIGYSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGGDDAPDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLSTNRIVELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQIVQELPPMEALLSKLER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
225437302	436	PREDICTED: uncharacterized protein LOC10	0.871	0.651	0.859	1e-138
356505558	437	PREDICTED: uncharacterized protein LOC10	0.871	0.649	0.866	1e-138
356572722	437	PREDICTED: uncharacterized protein LOC10	0.871	0.649	0.866	1e-138
147785370	467	hypothetical protein VITISV_033366 [Viti	0.871	0.608	0.852	1e-137
449484299	435	PREDICTED: uncharacterized LOC101208184	0.871	0.652	0.852	1e-135
357511233	446	hypothetical protein MTR_7g108590 [Medic	0.871	0.636	0.820	1e-134
388497672	446	unknown [Medicago truncatula]	0.871	0.636	0.820	1e-134
255582166	369	conserved hypothetical protein [Ricinus	0.871	0.769	0.806	1e-128
449469098	427	PREDICTED: uncharacterized protein LOC10	0.846	0.646	0.821	1e-127
15218638	453	tetratricopeptide repeat (TPR)-containin	0.871	0.626	0.771	1e-122

>gi|225437302|ref|XP_002263425.1| PREDICTED: uncharacterized protein LOC100245310 [Vitis vinifera] gi|297743856|emb|CBI36826.3| unnamed protein product [Vitis vinifera]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 244/284 (85%), Positives = 263/284 (92%)

Query: 43  QARLGGEDIGYSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGG 102
           +ARLGGEDIGYSFRRDLKLI EVQAPFRGVRRFF VA SAAAGIS FFT+PRL RAI+GG
Sbjct: 153 EARLGGEDIGYSFRRDLKLISEVQAPFRGVRRFFYVAFSAAAGISTFFTIPRLFRAIKGG 212

Query: 103 DDAPDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLSTNRIV 162
           D APD+ ETA N AINIGGII  + LF WDNKKEEEQLAQISRDETLSRLPLRLSTNR+V
Sbjct: 213 DGAPDIWETAGNAAINIGGIIALVLLFFWDNKKEEEQLAQISRDETLSRLPLRLSTNRVV 272

Query: 163 ELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGF 222
           ELVQLR TVRPVILAG KETVSLAI+KAERFRT+LL+RGVLLVPVIWGE +APQ+EKKGF
Sbjct: 273 ELVQLRDTVRPVILAGTKETVSLAIKKAERFRTELLKRGVLLVPVIWGENKAPQMEKKGF 332

Query: 223 GLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVT 282
           G+  KAA +LPSIGEDFEKR +SI AKS+LK+E+RFKAEVVSP+EWERWIRDQQKSEGVT
Sbjct: 333 GIPSKAATSLPSIGEDFEKRTESIAAKSRLKAEVRFKAEVVSPAEWERWIRDQQKSEGVT 392

Query: 283 PGEDVYIILRLDGRVRRSGKGMPDWQQIVQELPPMEALLSKLER 326
           PGEDVYIILRLDGRVRRSGKGMPDWQQIV+ELPPMEALLSKLER
Sbjct: 393 PGEDVYIILRLDGRVRRSGKGMPDWQQIVKELPPMEALLSKLER 436

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505558|ref|XP_003521557.1| PREDICTED: uncharacterized protein LOC100784188 [Glycine max]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/284 (86%), Positives = 263/284 (92%)

Query: 43  QARLGGEDIGYSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGG 102
           +ARLGGEDIGYSFRRDLKLI EVQAPFRGVRRFF VA +AAAGISLFFT+PRLLRAI GG
Sbjct: 154 EARLGGEDIGYSFRRDLKLISEVQAPFRGVRRFFYVAFTAAAGISLFFTLPRLLRAINGG 213

Query: 103 DDAPDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLSTNRIV 162
           D APDL+ TA N AINIGGI+V + LF WDNKKEEEQLAQISRDETLSRLPL LSTNR+V
Sbjct: 214 DGAPDLLATAGNAAINIGGIVVLVALFFWDNKKEEEQLAQISRDETLSRLPLCLSTNRVV 273

Query: 163 ELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGF 222
           ELVQLR TVRPVILAG+KETVSLA+Q+AERFRT+LLRRGVLLVPVIWGEG+  ++EKKGF
Sbjct: 274 ELVQLRDTVRPVILAGKKETVSLAMQRAERFRTELLRRGVLLVPVIWGEGQETKLEKKGF 333

Query: 223 GLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVT 282
           GL PKAA AL SIGEDFEKRAQSITAKSKLKSEIRFKAEVVSP EWERWIRDQQKSEGV+
Sbjct: 334 GLKPKAAEALSSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPVEWERWIRDQQKSEGVS 393

Query: 283 PGEDVYIILRLDGRVRRSGKGMPDWQQIVQELPPMEALLSKLER 326
            GEDVYIILRLDGRVRRSGKGMPDWQQIV+ELPPMEA LSK+ER
Sbjct: 394 LGEDVYIILRLDGRVRRSGKGMPDWQQIVKELPPMEAFLSKIER 437

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572722|ref|XP_003554515.1| PREDICTED: uncharacterized protein LOC100793204 [Glycine max]

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/284 (86%), Positives = 263/284 (92%)

Query: 43  QARLGGEDIGYSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGG 102
           +ARLGGEDIGYSFRRDLKLI EVQAPFRGVRRFF VA +AAAGISLFFTVPRLLRAI GG
Sbjct: 154 EARLGGEDIGYSFRRDLKLISEVQAPFRGVRRFFYVAFTAAAGISLFFTVPRLLRAINGG 213

Query: 103 DDAPDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLSTNRIV 162
           D APDL+ TA N AINIGGI+V + LF WDNKKEEEQLAQISRDETLSRLPL LSTNR+V
Sbjct: 214 DGAPDLLATAGNAAINIGGIVVLVALFFWDNKKEEEQLAQISRDETLSRLPLCLSTNRVV 273

Query: 163 ELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGF 222
           ELVQLR TVRPVILAG+KETVSLA+Q+AERF+T+LLRRGVLLVPVIWGEG+  ++EKKGF
Sbjct: 274 ELVQLRDTVRPVILAGKKETVSLAMQRAERFQTELLRRGVLLVPVIWGEGQETKLEKKGF 333

Query: 223 GLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVT 282
           GL PKAA ALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSP EWERWIRDQQKSEGV+
Sbjct: 334 GLKPKAAEALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPVEWERWIRDQQKSEGVS 393

Query: 283 PGEDVYIILRLDGRVRRSGKGMPDWQQIVQELPPMEALLSKLER 326
            GEDVYIILRLDGRVRRSGKGMPDWQQIV+ELPP EA LSK+ER
Sbjct: 394 LGEDVYIILRLDGRVRRSGKGMPDWQQIVKELPPKEAFLSKIER 437

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785370|emb|CAN77388.1| hypothetical protein VITISV_033366 [Vitis vinifera]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/284 (85%), Positives = 261/284 (91%)

Query: 43  QARLGGEDIGYSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGG 102
           +ARLGGEDIGYSFRRDLKLI EVQAPFRGVRRFF VA SAAAGIS FFT+PRL RAI+GG
Sbjct: 184 EARLGGEDIGYSFRRDLKLISEVQAPFRGVRRFFYVAFSAAAGISTFFTIPRLFRAIKGG 243

Query: 103 DDAPDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLSTNRIV 162
           D APD+ ETA N AINIGGII  + L  WDNKKEEEQLAQISRDETLSRLPLRLSTNR+V
Sbjct: 244 DGAPDIWETAGNAAINIGGIIALVLLXFWDNKKEEEQLAQISRDETLSRLPLRLSTNRVV 303

Query: 163 ELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGF 222
           ELVQLR TVRPVILAG KETVSLAI+ AERFRT+LL+RGVLLVPVIWGE +APQ+EKKGF
Sbjct: 304 ELVQLRDTVRPVILAGTKETVSLAIKXAERFRTELLKRGVLLVPVIWGENKAPQMEKKGF 363

Query: 223 GLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVT 282
           G+  KAA +LPSIGEDFEKR +SI AKS+LK+E+RFKAEVVSP+EWERWIRDQQKSEGVT
Sbjct: 364 GIPSKAATSLPSIGEDFEKRTESIAAKSRLKAEVRFKAEVVSPAEWERWIRDQQKSEGVT 423

Query: 283 PGEDVYIILRLDGRVRRSGKGMPDWQQIVQELPPMEALLSKLER 326
           PGEDVYIILRLDGRVRRSGKGMPDWQQIV+ELPPMEALLSKLER
Sbjct: 424 PGEDVYIILRLDGRVRRSGKGMPDWQQIVKELPPMEALLSKLER 467

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484299|ref|XP_004156843.1| PREDICTED: uncharacterized LOC101208184 [Cucumis sativus]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/285 (85%), Positives = 266/285 (93%), Gaps = 1/285 (0%)

Query: 43  QARLGGEDIGYSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGG 102
           +AR+GGEDIGY FRRDLKLI EVQAPFRGVR+FF VALSAAAGISL F +PRL RAI+GG
Sbjct: 151 EARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNIPRLFRAIQGG 210

Query: 103 DDAPDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLSTNRIV 162
           D APD+ ETA NLA+N+GGIIVF+ LFLWDNKKEEEQLAQISR+ETLSRLPLRLSTNRIV
Sbjct: 211 DGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIV 270

Query: 163 ELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGF 222
           ELVQLR TVRPVILAG+KETVS AIQKAERFRT+LLRRGVLLVPVIWGEGR PQ+EKKGF
Sbjct: 271 ELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGF 330

Query: 223 G-LAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGV 281
           G     AAAALPSIGEDFEKRAQSITAKSKLK+EIRF+AEV+SP+EWE WIRDQQ+SEGV
Sbjct: 331 GAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQESEGV 390

Query: 282 TPGEDVYIILRLDGRVRRSGKGMPDWQQIVQELPPMEALLSKLER 326
           TPGEDVYIILRLDGRVRRSG+GMPDWQ+I++ELPPMEALLSKLE+
Sbjct: 391 TPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK 435

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511233|ref|XP_003625905.1| hypothetical protein MTR_7g108590 [Medicago truncatula] gi|355500920|gb|AES82123.1| hypothetical protein MTR_7g108590 [Medicago truncatula]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/284 (82%), Positives = 263/284 (92%)

Query: 43  QARLGGEDIGYSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGG 102
           +ARLGGED+G SFRRDLKLI EVQAPFRG+RRFF VA +AAAGISLFF VPR+LRAI+GG
Sbjct: 163 EARLGGEDVGSSFRRDLKLISEVQAPFRGIRRFFYVAFTAAAGISLFFNVPRILRAIQGG 222

Query: 103 DDAPDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLSTNRIV 162
           D APD++ETA N A+NIGGI+VF+ LFLWDNKKEEEQ+AQISR+ETLSRLPLRLSTNR+V
Sbjct: 223 DGAPDVLETAGNAAVNIGGIVVFVALFLWDNKKEEEQIAQISRNETLSRLPLRLSTNRVV 282

Query: 163 ELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGF 222
           ELVQLR TVRPVI+AG+KETV+LA++KAERFRTDLLRRGVLLVPVIWGEGR  ++EKKGF
Sbjct: 283 ELVQLRDTVRPVIIAGKKETVTLALRKAERFRTDLLRRGVLLVPVIWGEGRETKIEKKGF 342

Query: 223 GLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVT 282
           GL PKAA ALPSIGEDFEKR QS+TA+SKLK+E+RFKAE VSP+EWE WIRDQQKSEGV 
Sbjct: 343 GLQPKAAEALPSIGEDFEKRTQSVTAQSKLKAEVRFKAEAVSPAEWEWWIRDQQKSEGVP 402

Query: 283 PGEDVYIILRLDGRVRRSGKGMPDWQQIVQELPPMEALLSKLER 326
            GEDVYIILRLDGRVRRSG+G+PDW QI +ELPPMEA+LSKLER
Sbjct: 403 VGEDVYIILRLDGRVRRSGRGIPDWDQIAKELPPMEAILSKLER 446

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497672|gb|AFK36902.1| unknown [Medicago truncatula]

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/284 (82%), Positives = 262/284 (92%)

Query: 43  QARLGGEDIGYSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGG 102
           +ARLGGED+G SFRRDLKLI EVQAPFRG+RRFF VA +AAAGISLFF VPR+LRAI+GG
Sbjct: 163 EARLGGEDVGSSFRRDLKLISEVQAPFRGIRRFFYVAFTAAAGISLFFNVPRILRAIQGG 222

Query: 103 DDAPDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLSTNRIV 162
           D APD++ETA N A+NIGGI+VF+ LFLWDNKKEEEQ+AQISR+ETLSRLPLRLSTNR+V
Sbjct: 223 DGAPDVLETAGNAAVNIGGIVVFVALFLWDNKKEEEQIAQISRNETLSRLPLRLSTNRVV 282

Query: 163 ELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGF 222
           ELVQLR TVRPVI+AG+KETV+LA++KAERFRTDLLRRGVLLVPVIWGEGR  ++EKKGF
Sbjct: 283 ELVQLRDTVRPVIIAGKKETVTLALRKAERFRTDLLRRGVLLVPVIWGEGRETKIEKKGF 342

Query: 223 GLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVT 282
           GL PKAA ALPSIGEDFEKR QS+TA+SKLK+E RFKAE VSP+EWE WIRDQQKSEGV 
Sbjct: 343 GLQPKAAEALPSIGEDFEKRTQSVTAQSKLKAEARFKAEAVSPAEWEWWIRDQQKSEGVP 402

Query: 283 PGEDVYIILRLDGRVRRSGKGMPDWQQIVQELPPMEALLSKLER 326
            GEDVYIILRLDGRVRRSG+G+PDW QI +ELPPMEA+LSKLER
Sbjct: 403 VGEDVYIILRLDGRVRRSGRGIPDWDQIAKELPPMEAILSKLER 446

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582166|ref|XP_002531877.1| conserved hypothetical protein [Ricinus communis] gi|223528485|gb|EEF30514.1| conserved hypothetical protein [Ricinus communis]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/289 (80%), Positives = 252/289 (87%), Gaps = 5/289 (1%)

Query: 43  QARLGGEDIGYSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGG 102
           +A+LGGEDIGYSFRRDLKLI EVQAPFRG+RRFF VA SAAAGISL FTVPRL RAI+GG
Sbjct: 81  EAKLGGEDIGYSFRRDLKLISEVQAPFRGIRRFFYVAFSAAAGISLLFTVPRLFRAIKGG 140

Query: 103 DDAPDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLSTNRIV 162
           D APDL  TA N AINIGGI+V + L  WDNKKEEEQ+AQI+RDETLSRLPLRLSTNR+V
Sbjct: 141 DGAPDLWNTAGNAAINIGGIVVLVALLFWDNKKEEEQIAQITRDETLSRLPLRLSTNRVV 200

Query: 163 ELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGF 222
           ELVQLR TVRPVILAG+KETVSLA+QKAERFRT+LLRRGVLLVPVIWGEG  P+V+KKGF
Sbjct: 201 ELVQLRDTVRPVILAGKKETVSLAMQKAERFRTELLRRGVLLVPVIWGEGTEPEVQKKGF 260

Query: 223 GLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSE-----WERWIRDQQK 277
           G+  KAA ALPSIGEDFEKR QS+  KSKLK+EIRFKAE+          W  WIRDQQK
Sbjct: 261 GVPGKAATALPSIGEDFEKRTQSVIVKSKLKAEIRFKAELYRQQNGKDLLWGGWIRDQQK 320

Query: 278 SEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQIVQELPPMEALLSKLER 326
           SEGVTPG DVYIILRLDGRVR SGKGMPDWQQIV+ELPPMEALLSKLER
Sbjct: 321 SEGVTPGADVYIILRLDGRVRISGKGMPDWQQIVKELPPMEALLSKLER 369

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469098|ref|XP_004152258.1| PREDICTED: uncharacterized protein LOC101208184 [Cucumis sativus]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/285 (82%), Positives = 258/285 (90%), Gaps = 9/285 (3%)

Query: 43  QARLGGEDIGYSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGG 102
           +AR+GGEDIGY FRRDLKLI EVQAPFRGVR+FF VALSAAAGISL F +PRL RAI+GG
Sbjct: 151 EARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNIPRLFRAIQGG 210

Query: 103 DDAPDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLSTNRIV 162
           D APD+ ETA NLA+N+GGIIVF+ LFLWDNKKEEEQLAQISR+ETLSRLPLRLSTNRIV
Sbjct: 211 DGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIV 270

Query: 163 ELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGF 222
           ELVQLR TVRPVILAG+KETVS A        T+LLRRGVLLVPVIWGEGR PQ+EKKGF
Sbjct: 271 ELVQLRDTVRPVILAGKKETVSSA--------TELLRRGVLLVPVIWGEGREPQIEKKGF 322

Query: 223 G-LAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGV 281
           G     AAAALPSIGEDFEKRAQSITAKSKLK+EIRF+AEV+SP+EWE WIR+QQ+SEGV
Sbjct: 323 GAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGV 382

Query: 282 TPGEDVYIILRLDGRVRRSGKGMPDWQQIVQELPPMEALLSKLER 326
           TPGEDVYIILRLDGRVRRSG+GMPDWQ+I++ELPPMEALLSKLE+
Sbjct: 383 TPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK 427

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218638|ref|NP_171790.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] gi|6056411|gb|AAF02875.1|AC009525_9 Hypothetical protein [Arabidopsis thaliana] gi|332189374|gb|AEE27495.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/284 (77%), Positives = 256/284 (90%)

Query: 43  QARLGGEDIGYSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGG 102
           +ARLGGEDIG +FRRDLKLI EV+APFRGVR+FF  A +AAAGIS+FFTVPRL++AI GG
Sbjct: 170 EARLGGEDIGDNFRRDLKLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGG 229

Query: 103 DDAPDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLSTNRIV 162
           D AP+L+ET  N AINIGGI+V ++LFLW+NKKEEEQ+ QI+RDETLSRLPLRLSTNR+V
Sbjct: 230 DGAPNLLETTGNAAINIGGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVV 289

Query: 163 ELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGF 222
           ELVQLR TVRPVILAG+KETV+LA+QKA+RFRT+LLRRGVLLVPV+WGE + P++EKKGF
Sbjct: 290 ELVQLRDTVRPVILAGKKETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGF 349

Query: 223 GLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVT 282
           G + KAA +LPSIGEDF+ RAQS+ A+SKLK EIRFKAE VSP EWERWIRDQQ SEGV 
Sbjct: 350 GASSKAATSLPSIGEDFDTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVN 409

Query: 283 PGEDVYIILRLDGRVRRSGKGMPDWQQIVQELPPMEALLSKLER 326
           PG+DVYIILRLDGRVRRSG+GMPDW +I +ELPPM+ +LSKLER
Sbjct: 410 PGDDVYIILRLDGRVRRSGRGMPDWAEISKELPPMDDVLSKLER 453

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
TAIR|locus:2024720	453	LPA1 "LOW PSII ACCUMULATION1"	0.871	0.626	0.771	3.8e-117
TAIR|locus:2117803	347	AT4G28740 "AT4G28740" [Arabido	0.490	0.461	0.308	5e-34

TAIR|locus:2024720 LPA1 "LOW PSII ACCUMULATION1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1154 (411.3 bits), Expect = 3.8e-117, P = 3.8e-117
 Identities = 219/284 (77%), Positives = 256/284 (90%)

Query:    43 QARLGGEDIGYSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGG 102
             +ARLGGEDIG +FRRDLKLI EV+APFRGVR+FF  A +AAAGIS+FFTVPRL++AI GG
Sbjct:   170 EARLGGEDIGDNFRRDLKLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGG 229

Query:   103 DDAPDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLSTNRIV 162
             D AP+L+ET  N AINIGGI+V ++LFLW+NKKEEEQ+ QI+RDETLSRLPLRLSTNR+V
Sbjct:   230 DGAPNLLETTGNAAINIGGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVV 289

Query:   163 ELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGF 222
             ELVQLR TVRPVILAG+KETV+LA+QKA+RFRT+LLRRGVLLVPV+WGE + P++EKKGF
Sbjct:   290 ELVQLRDTVRPVILAGKKETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGF 349

Query:   223 GLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVT 282
             G + KAA +LPSIGEDF+ RAQS+ A+SKLK EIRFKAE VSP EWERWIRDQQ SEGV 
Sbjct:   350 GASSKAATSLPSIGEDFDTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVN 409

Query:   283 PGEDVYIILRLDGRVRRSGKGMPDWQQIVQELPPMEALLSKLER 326
             PG+DVYIILRLDGRVRRSG+GMPDW +I +ELPPM+ +LSKLER
Sbjct:   410 PGDDVYIILRLDGRVRRSGRGMPDWAEISKELPPMDDVLSKLER 453

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010270 "photosystem II oxygen evolving complex assembly" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA

TAIR|locus:2117803 AT4G28740 "AT4G28740" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 5.0e-34, Sum P(2) = 5.0e-34
 Identities = 50/162 (30%), Positives = 92/162 (56%)

Query:    58 DLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGGDDAPDLIETAENLAI 117
             D ++  EV +PFR VR FF +A  A+  +       RL+ A+     + +++E  + L +
Sbjct:    94 DARIRSEVLSPFRSVRMFFYLAFIASGSLGGLIATSRLIGALANPARSGEVLEIVKGLGV 153

Query:   118 NIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLS-TNRIVELVQLRGTVRPVIL 176
             +IG   +F  L+  +NK +  Q+A++SR+E L +L +R+   N+++ +  LRG  R VI 
Sbjct:   154 DIGAASLFAFLYFNENKTKNAQMARLSREENLGKLKMRVEENNKVISVGDLRGVARLVIC 213

Query:   177 AGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVE 218
             AG  E +  A ++++ +   L+ RGV++V     +G +P +E
Sbjct:   214 AGPAEFIEEAFKRSKEYTQGLVERGVVVVAYAT-DGNSPVLE 254

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	326
PLN03098	453	PLN03098, LPA1, LOW PSII ACCUMULATION1; Provisiona	0.0
pfam11998	75	pfam11998, DUF3493, Protein of unknown function (D	9e-21

>gnl|CDD|215573 PLN03098, LPA1, LOW PSII ACCUMULATION1; Provisional

 Score =  525 bits (1354), Expect = 0.0
 Identities = 223/284 (78%), Positives = 260/284 (91%)

Query: 43  QARLGGEDIGYSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGG 102
           +AR GGEDIG SFRRDLKLI EVQAPFRGVR+FF VA +AAAGIS FFTVPRL+RAI+GG
Sbjct: 170 EARKGGEDIGSSFRRDLKLISEVQAPFRGVRKFFYVAFTAAAGISTFFTVPRLIRAIQGG 229

Query: 103 DDAPDLIETAENLAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLSTNRIV 162
           D APD++ETA N AINIGGI+ F++LFLW+NKKEEEQ++QI+RDETLSRLP+RLSTNRIV
Sbjct: 230 DGAPDVLETAGNAAINIGGIVAFVSLFLWENKKEEEQMSQITRDETLSRLPVRLSTNRIV 289

Query: 163 ELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGF 222
           ELVQLR   RPVILAG KE+V+LA+QKAER+RT+LL+RGVLL+PV+WGE + PQ +KKGF
Sbjct: 290 ELVQLRDITRPVILAGTKESVTLAMQKAERYRTELLKRGVLLIPVVWGENKDPQPKKKGF 349

Query: 223 GLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVT 282
           G + KAAA+LPSIG+DFEKRAQS  AKS LK E RFKAEVVSP+EWERWIRDQQ+SEGVT
Sbjct: 350 GRSSKAAASLPSIGDDFEKRAQSAAAKSVLKGEKRFKAEVVSPAEWERWIRDQQESEGVT 409

Query: 283 PGEDVYIILRLDGRVRRSGKGMPDWQQIVQELPPMEALLSKLER 326
           PGEDVYIILRLDGRVRRSG+GMP+WQ+IV+ELPP+++LLSKLER
Sbjct: 410 PGEDVYIILRLDGRVRRSGRGMPEWQEIVKELPPLDSLLSKLER 453

Length = 453

>gnl|CDD|192909 pfam11998, DUF3493, Protein of unknown function (DUF3493)

 Score = 84.3 bits (209), Expect = 9e-21
 Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 7/81 (8%)

Query: 54  SFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGGDDAPDLIETAE 113
                 +L  E QAPFRG+RRF  +A +A+AG+ LF  + RL+         PDL+ET  
Sbjct: 2   DPELRARLRAEAQAPFRGLRRFLYLAFAASAGLGLFIMLFRLIA-------GPDLLETLP 54

Query: 114 NLAINIGGIIVFITLFLWDNK 134
           NLAI IG + +F+ L  W+ K
Sbjct: 55  NLAIQIGALALFVFLLRWERK 75

This family of proteins is functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length. Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	326
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	100.0
PF11998	75	DUF3493: Protein of unknown function (DUF3493); In	99.95
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	94.44
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	89.71
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	89.48
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	87.82
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	84.82
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	82.29

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=100.00  E-value=8.5e-94  Score=711.49  Aligned_cols=292  Identities=77%  Similarity=1.210  Sum_probs=286.0

Q ss_pred             hhhHHHHHHHhcCCccccccchhhhhhHhhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcchHHHhhh
Q 020414           35 TQNYLLCLQARLGGEDIGYSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGGDDAPDLIETAEN  114 (326)
Q Consensus        35 ~~~~~~~~~~~~~~e~~g~s~~~~~rLr~E~~aPfR~lR~f~y~af~aSa~iG~~i~~~rl~~AlaG~~~ap~l~~~l~N  114 (326)
                      +++-.+++++++.|+..|.++++++|||+|+++|||++|+|||+||+|||+||+||+++|++++++|.+++|||+++++|
T Consensus       162 pef~eLlee~rk~G~~~g~~~~~~~kL~~E~~aPfR~~R~f~y~a~~asa~ig~~i~~~rl~~a~aG~~~ap~l~~~~~n  241 (453)
T PLN03098        162 PEFKELQEEARKGGEDIGSSFRRDLKLISEVQAPFRGVRKFFYVAFTAAAGISTFFTVPRLIRAIQGGDGAPDVLETAGN  241 (453)
T ss_pred             HHHHHHHHHHHHhCCccCCchhhHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHhHhhcc
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhhchhHHHHHHHhhhhhhccCCeeeeCCCceeehhhhcCcceeEEEecCHHHHHHHHHHHHHHH
Q 020414          115 LAINIGGIIVFITLFLWDNKKEEEQLAQISRDETLSRLPLRLSTNRIVELVQLRGTVRPVILAGRKETVSLAIQKAERFR  194 (326)
Q Consensus       115 laI~igava~~~~L~~~d~k~~~~qlari~REe~L~rL~V~l~~~r~v~L~qLRg~aRvVIvAG~~e~V~~Al~~Ae~~r  194 (326)
                      |+||+|++++|+|||+||+|++|+||+||+|||+|+||+|+++++|+|+|+||||++|||||||++|||++||++||+||
T Consensus       242 laI~igav~~f~~L~~~e~k~~e~q~~ri~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~e~v~~al~~ae~~r  321 (453)
T PLN03098        242 AAINIGGIVAFVSLFLWENKKEEEQMSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTKESVTLAMQKAERYR  321 (453)
T ss_pred             cchHHHHHHHHHHHHHHHhcccHHHHHHHHhhhhhccceEeccCCCEEeHHHhcCcceEEEEECCHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCcEEEEEEeCCCCCcccccccCCCcccccccCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHH
Q 020414          195 TDLLRRGVLLVPVIWGEGRAPQVEKKGFGLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRD  274 (326)
Q Consensus       195 ~~L~~rgVLVVPVv~~~~~~~~~~~kgfG~~~~aa~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~e  274 (326)
                      ++|.+||||||||+|++++.++.+++|||.++++|++.|+.+++|++++++++++++...++||+|+|+++++|++||+|
T Consensus       322 ~~L~~r~VlvVPv~~~~~~~~~~~~~gfg~~s~~a~~~p~~~~~~~~~~~~~~~~~~~~~~kr~~a~pv~~~~W~~wi~~  401 (453)
T PLN03098        322 TELLKRGVLLIPVVWGENKDPQPKKKGFGRSSKAAASLPSIGDDFEKRAQSAAAKSVLKGEKRFKAEVVSPAEWERWIRD  401 (453)
T ss_pred             HHHHHcCcEEEEEecCCCCccccccccccccchhhhcCCCccchhhhhhHHHHHHHhhhcccceEEeecchHHHHHHHHH
Confidence            99999999999999988877787889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCcEEEEEeeCceeeecCCCCCchHHHHhcCCChhhhhhhhcC
Q 020414          275 QQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQIVQELPPMEALLSKLER  326 (326)
Q Consensus       275 Q~~~aGv~~~~gVyi~LrlDGRVr~SG~G~PpW~~lv~eLP~~~g~~~~l~~  326 (326)
                      |++++||++++||||+|++|||||+||+|+|||++|++||||+|||||||||
T Consensus       402 q~~~~gv~~~~~vyi~lr~dGrVr~SG~G~P~W~~~v~eLP~~~~~~~~~~~  453 (453)
T PLN03098        402 QQESEGVTPGEDVYIILRLDGRVRRSGRGMPEWQEIVKELPPLDSLLSKLER  453 (453)
T ss_pred             HHHhcCCCCCCceEEEEeeCCeEecCCCCCCCHHHHHHhCCcchhhhhhccC
Confidence            9999999999999999999999999999999999999999999999999997

>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised

Probab=99.95  E-value=4.1e-28  Score=190.87  Aligned_cols=75  Identities=49%  Similarity=0.785  Sum_probs=71.1

Q ss_pred             ccchhhhhhHhhhhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcchHHHhhhhhHHHHHHHHHHHHHhhh
Q 020414           53 YSFRRDLKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGGDDAPDLIETAENLAINIGGIIVFITLFLWD  132 (326)
Q Consensus        53 ~s~~~~~rLr~E~~aPfR~lR~f~y~af~aSa~iG~~i~~~rl~~AlaG~~~ap~l~~~l~NlaI~igava~~~~L~~~d  132 (326)
                      +++++++|||+|+++|||++|+|||+||+|||+||++|+++|++   +    +|+++|+++||+||+|++++|+|||+||
T Consensus         1 ~~~~~~~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl~---a----~~~l~~~l~nlaI~igava~~~~L~~~d   73 (75)
T PF11998_consen    1 MDPEQYARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLFRLI---A----GPDLNEALPNLAIQIGAVALFAFLFRWD   73 (75)
T ss_pred             CCHHHHHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHHH---c----CccHHHHhhhHhHHHHHHHHHHHHHHHh
Confidence            46789999999999999999999999999999999999999999   4    5569999999999999999999999999


Q ss_pred             ch
Q 020414          133 NK  134 (326)
Q Consensus       133 ~k  134 (326)
                      +|
T Consensus        74 ~k   75 (75)
T PF11998_consen   74 RK   75 (75)
T ss_pred             cC
Confidence            86

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=94.44  E-value=0.55  Score=39.62  Aligned_cols=105  Identities=19%  Similarity=0.284  Sum_probs=66.4

Q ss_pred             ehhhhcCcceeEEEecC---HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCcccccccCCCcccccccCCCCchhH
Q 020414          163 ELVQLRGTVRPVILAGR---KETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGLAPKAAAALPSIGEDF  239 (326)
Q Consensus       163 ~L~qLRg~aRvVIvAG~---~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~~~kgfG~~~~aa~a~ps~~~~~  239 (326)
                      +|.+++...|++|+..|   ..+...-+...+..+..|.+|+|+|+.+ ++.+....      +                
T Consensus         2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i-~~~~~~~~------~----------------   58 (118)
T PF13778_consen    2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVI-TGDGARSP------G----------------   58 (118)
T ss_pred             ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEE-eCCccccc------c----------------
Confidence            58899999999998886   3334444555555678899999999988 43221110      0                


Q ss_pred             HHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCCCCCchHHHHhcCC
Q 020414          240 EKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQIVQELP  315 (326)
Q Consensus       240 e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~G~PpW~~lv~eLP  315 (326)
                                           .++..    .-+.+-.+.=+++++.--.|-|.|||.|--+-...++|.++.+.+.
T Consensus        59 ---------------------~~~~~----~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID  109 (118)
T PF13778_consen   59 ---------------------KPLSP----EDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDPEELFDTID  109 (118)
T ss_pred             ---------------------CcCCH----HHHHHHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCHHHHHHHHh
Confidence                                 01110    0011111222444545558899999999999777778999877543

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=89.71  E-value=11  Score=31.95  Aligned_cols=132  Identities=14%  Similarity=0.110  Sum_probs=76.8

Q ss_pred             hhhhccCCeeeeCCCceeehhhhcCcceeEE-EecCHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCcccccccCC
Q 020414          145 RDETLSRLPLRLSTNRIVELVQLRGTVRPVI-LAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFG  223 (326)
Q Consensus       145 REe~L~rL~V~l~~~r~v~L~qLRg~aRvVI-vAG~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~~~kgfG  223 (326)
                      -......+.+.--+++.+++.++.+..-++. .+-.-..+...+.....+.+++.++++-|+-|.++...          
T Consensus        37 ~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~----------  106 (173)
T PRK03147         37 VGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETE----------  106 (173)
T ss_pred             CCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCH----------
Confidence            3444445555555789999999987553333 33334456666777777888888888888888774210          


Q ss_pred             CcccccccCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCCC
Q 020414          224 LAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKG  303 (326)
Q Consensus       224 ~~~~aa~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~G  303 (326)
                                   +.+.    .....    .+..   .|+..++    -.+-.+.-|+. .-+-.+.+..||+|...-.|
T Consensus       107 -------------~~~~----~~~~~----~~~~---~~~~~d~----~~~~~~~~~v~-~~P~~~lid~~g~i~~~~~g  157 (173)
T PRK03147        107 -------------LAVK----NFVNR----YGLT---FPVAIDK----GRQVIDAYGVG-PLPTTFLIDKDGKVVKVITG  157 (173)
T ss_pred             -------------HHHH----HHHHH----hCCC---ceEEECC----cchHHHHcCCC-CcCeEEEECCCCcEEEEEeC
Confidence                         1111    01000    0111   2222211    01111334552 24667889999999999999


Q ss_pred             CCchHHHHhcCC
Q 020414          304 MPDWQQIVQELP  315 (326)
Q Consensus       304 ~PpW~~lv~eLP  315 (326)
                      ..+.+++.+.|-
T Consensus       158 ~~~~~~l~~~l~  169 (173)
T PRK03147        158 EMTEEQLEEYLE  169 (173)
T ss_pred             CCCHHHHHHHHH
Confidence            888887766543

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=89.48  E-value=5.5  Score=33.00  Aligned_cols=61  Identities=15%  Similarity=0.143  Sum_probs=48.5

Q ss_pred             CCeeee--CCCceeehhhhcCcceeEEEecC--HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCC
Q 020414          151 RLPLRL--STNRIVELVQLRGTVRPVILAGR--KETVSLAIQKAERFRTDLLRRGVLLVPVIWGE  211 (326)
Q Consensus       151 rL~V~l--~~~r~v~L~qLRg~aRvVIvAG~--~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~  211 (326)
                      .+.+..  .+++.++|++++|..-+|..-++  =..+...+...+.+.+...+.||-+|-|..+.
T Consensus         8 ~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~   72 (146)
T PF08534_consen    8 DFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDD   72 (146)
T ss_dssp             CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESS
T ss_pred             CeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccC
Confidence            445544  58899999999999876665554  77888888888888888899999999998843

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=87.82  E-value=8.4  Score=31.40  Aligned_cols=59  Identities=14%  Similarity=0.114  Sum_probs=41.5

Q ss_pred             CeeeeCCCceeehhhhcCcceeEEEe-cC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414          152 LPLRLSTNRIVELVQLRGTVRPVILA-GR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWG  210 (326)
Q Consensus       152 L~V~l~~~r~v~L~qLRg~aRvVIvA-G~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~  210 (326)
                      +.+.-.+++.+++.+++|..=++..- ++ -..+...+.......+.+.+.|+.||.|..+
T Consensus         6 f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d   66 (140)
T cd03017           6 FTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD   66 (140)
T ss_pred             ccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            34443468999999999753333332 22 3467777778888888999999999998874

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=84.82  E-value=17  Score=30.52  Aligned_cols=63  Identities=13%  Similarity=0.148  Sum_probs=44.8

Q ss_pred             hccCCeeeeCCCceeehhhhcCcceeEEEecC--HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414          148 TLSRLPLRLSTNRIVELVQLRGTVRPVILAGR--KETVSLAIQKAERFRTDLLRRGVLLVPVIWG  210 (326)
Q Consensus       148 ~L~rL~V~l~~~r~v~L~qLRg~aRvVIvAG~--~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~  210 (326)
                      .+-.+.+.--+|+.+++.+++|..-+|..-.+  -..+...+...+...+++.+.|+.||.|..+
T Consensus         9 ~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d   73 (154)
T PRK09437          9 IAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD   73 (154)
T ss_pred             cCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            33444444346789999999997655555432  3456666777788888899999999999763

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=82.29  E-value=22  Score=29.28  Aligned_cols=59  Identities=10%  Similarity=0.035  Sum_probs=41.8

Q ss_pred             CCeeeeCCCceeehhhhcCcce-eEEEe-c-CHHHHHHHHHHHHHHHHHHhhcCcEEEEEEe
Q 020414          151 RLPLRLSTNRIVELVQLRGTVR-PVILA-G-RKETVSLAIQKAERFRTDLLRRGVLLVPVIW  209 (326)
Q Consensus       151 rL~V~l~~~r~v~L~qLRg~aR-vVIvA-G-~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~  209 (326)
                      .+.+.=.+++.+++++++|... +++.. + --..+...+...+.+.+++.+.|+-||-|..
T Consensus         9 ~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~   70 (149)
T cd03018           9 DFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISV   70 (149)
T ss_pred             CcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecC
Confidence            3444434689999999999433 33332 2 2456777888888888899999999888876

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	326
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 8e-07
 Identities = 43/319 (13%), Positives = 88/319 (27%), Gaps = 99/319 (31%)

Query: 6   CIILLISRNMKVTGSVKG-HFFHFLLINI---LTQNYLLCLQARLGGEDIGYSFRRD--- 58
           C ILL +R  +VT  +      H  L +    LT + +  L  +           R+   
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-DLPREVLT 324

Query: 59  -----LKLIGEVQAPFRGVRRFFSVALSAAAGISLFFTVPRLLRAIEGGDDA--PDLIET 111
                L +I E           +                 +L   IE   +   P     
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNW-----------KHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 112 A-ENLAI-----NIGGIIVFITLFLWDNKKEEEQ-----------LAQISRDETLSRLP- 153
             + L++     +I  I++ +   +W +  + +            L +    E+   +P 
Sbjct: 374 MFDRLSVFPPSAHIPTILLSL---IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 154 --LRLST---------NRIVELVQLRGTVRPVILAGRKETVSL----------------A 186
             L L             IV+   +  T          + +                   
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDS-------DDLIPPYLDQYFYSHIGHHLKN 483

Query: 187 IQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKK--GFGLAPKAAAALPSIGEDFEKRAQ 244
           I+  ER    L R   + +   +       +E+K      A  A+ ++ +  +  +    
Sbjct: 484 IEHPERM--TLFRM--VFLDFRF-------LEQKIRHDSTAWNASGSILNTLQQLKFYKP 532

Query: 245 SITAKS-----KLKSEIRF 258
            I          + + + F
Sbjct: 533 YICDNDPKYERLVNAILDF 551

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	326
2lrt_A	152	Uncharacterized protein; structural genomics, thio	94.95
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	94.59
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	94.35
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	94.28
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	93.45
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	92.77
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	92.26
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	92.26
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	91.89
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	91.89
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	91.52
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	91.4
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	91.24
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	91.13
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	91.0
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	91.0
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	90.95
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	90.66
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	90.61
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	90.41
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	90.25
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	90.17
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	89.98
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	89.83
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	89.74
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	89.71
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	89.67
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	89.59
3raz_A	151	Thioredoxin-related protein; structural genomics,	89.49
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	89.16
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	88.72
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	88.27
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	88.21
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	87.72
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	87.58
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	85.67
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	83.92
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	83.63
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	83.13
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	82.54
3me7_A	170	Putative uncharacterized protein; electron transfe	81.45
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	81.09
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	80.37
4evm_A	138	Thioredoxin family protein; structural genomics, n	80.29

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=94.95  E-value=0.79  Score=36.86  Aligned_cols=128  Identities=9%  Similarity=0.100  Sum_probs=78.2

Q ss_pred             ccCCeeeeCCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCcccccccCCCccc
Q 020414          149 LSRLPLRLSTNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGLAPK  227 (326)
Q Consensus       149 L~rL~V~l~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~~~kgfG~~~~  227 (326)
                      +-.+.+.-.+|+.+++.+++|..-+|....+ =..+...+...+.+.+++.+.|+.||-|..+...              
T Consensus        15 ~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~--------------   80 (152)
T 2lrt_A           15 IIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDE--------------   80 (152)
T ss_dssp             SCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCH--------------
T ss_pred             CCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCH--------------
Confidence            3344454457899999999986544443333 3456667777788888899999999999885320              


Q ss_pred             ccccCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCCCCCch
Q 020414          228 AAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDW  307 (326)
Q Consensus       228 aa~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~G~PpW  307 (326)
                               +.+.    ... .     .-.|... .+.+.+..=+.+   .-|+. .-+.++.+..||+|+.+..|..+|
T Consensus        81 ---------~~~~----~~~-~-----~~~~~~~-~d~~~~~~~~~~---~~~v~-~~P~~~lid~~G~i~~~~~g~~~~  136 (152)
T 2lrt_A           81 ---------HFWK----TSA-D-----NLPWVCV-RDANGAYSSYIS---LYNVT-NLPSVFLVNRNNELSARGENIKDL  136 (152)
T ss_dssp             ---------HHHH----HHH-T-----TCSSEEE-ECSSGGGCHHHH---HHTCC-SCSEEEEEETTTEEEEETTTCSCH
T ss_pred             ---------HHHH----HHH-h-----CCCceEE-ECCCCcchHHHH---HcCcc-cCceEEEECCCCeEEEecCCHHHH
Confidence                     0111    111 0     1223222 122222111111   22442 246789999999999999999999


Q ss_pred             HHHHhcC
Q 020414          308 QQIVQEL  314 (326)
Q Consensus       308 ~~lv~eL  314 (326)
                      .+.+..+
T Consensus       137 e~~~~~~  143 (152)
T 2lrt_A          137 DEAIKKL  143 (152)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887653

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=94.59  E-value=1.1  Score=37.41  Aligned_cols=132  Identities=11%  Similarity=0.174  Sum_probs=70.4

Q ss_pred             CCceeehhhhcCcceeEEEecC--HHHHHHHHHHHHHHHHHHhhc--CcEEEEEEeCCCCCcccccccCCCcccccccCC
Q 020414          158 TNRIVELVQLRGTVRPVILAGR--KETVSLAIQKAERFRTDLLRR--GVLLVPVIWGEGRAPQVEKKGFGLAPKAAAALP  233 (326)
Q Consensus       158 ~~r~v~L~qLRg~aRvVIvAG~--~e~V~~Al~~Ae~~r~~L~~r--gVLVVPVv~~~~~~~~~~~kgfG~~~~aa~a~p  233 (326)
                      +|+.++|++|||..-+|-.--+  ..-+-..+.....+.+.+.+.  +|.+|-|.++.....                 |
T Consensus        21 ~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dt-----------------p   83 (170)
T 4hde_A           21 DGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDK-----------------P   83 (170)
T ss_dssp             TSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCC-----------------H
T ss_pred             CCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCccccc-----------------H
Confidence            7899999999996544443322  234666666666666677655  477787777532111                 0


Q ss_pred             CCchhHHHHhHHHhhhhccccccceEE-EeeChhhHHHHHHHHHhhcCCCCC------CcEEEEEeeCceeeec--CCCC
Q 020414          234 SIGEDFEKRAQSITAKSKLKSEIRFKA-EVVSPSEWERWIRDQQKSEGVTPG------EDVYIILRLDGRVRRS--GKGM  304 (326)
Q Consensus       234 s~~~~~e~~~~~~~a~~~~~~~~rw~A-~Pv~~~eW~~wi~eQ~~~aGv~~~------~gVyi~LrlDGRVr~S--G~G~  304 (326)
                             +..+..+.. -......|.. +....++-..+.........-.++      ...++.|..||+|++.  |...
T Consensus        84 -------~~l~~y~~~-~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~  155 (170)
T 4hde_A           84 -------ENLKAFIQK-FTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISN  155 (170)
T ss_dssp             -------HHHHHHHTT-TCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSS
T ss_pred             -------HHHHHHHHH-cCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCC
Confidence                   011111111 1122345654 333333444444333211111121      2356789999999976  5555


Q ss_pred             CchHHHHhcC
Q 020414          305 PDWQQIVQEL  314 (326)
Q Consensus       305 PpW~~lv~eL  314 (326)
                      .+-++++++|
T Consensus       156 ~~~~~l~~~i  165 (170)
T 4hde_A          156 TPYEDIIRDM  165 (170)
T ss_dssp             CCHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            6667887765

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=94.35  E-value=0.33  Score=37.64  Aligned_cols=132  Identities=9%  Similarity=0.036  Sum_probs=76.6

Q ss_pred             hccCCeeeeCCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCcccccccCCCcc
Q 020414          148 TLSRLPLRLSTNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGLAP  226 (326)
Q Consensus       148 ~L~rL~V~l~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~~~kgfG~~~  226 (326)
                      .+-.+.+.-.+++.+++.+++|..-+|...++ =.++...+...+.+.+.+.+.|+.+|.|..+...             
T Consensus        10 ~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~-------------   76 (148)
T 3hcz_A           10 KAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKD-------------   76 (148)
T ss_dssp             BCCCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSS-------------
T ss_pred             cCCceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCH-------------
Confidence            34444444457899999999886444433332 2345556667777888888889999999885311             


Q ss_pred             cccccCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCCCCCc
Q 020414          227 KAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPD  306 (326)
Q Consensus       227 ~aa~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~G~Pp  306 (326)
                                +++.+-.+..-.       ..|... .+.+.  .  .+-.+.-|+ ..-+.++.+..||+|..+..|.+.
T Consensus        77 ----------~~~~~~~~~~~~-------~~~~~~-~d~~~--~--~~~~~~~~i-~~~P~~~lid~~G~i~~~~~g~~~  133 (148)
T 3hcz_A           77 ----------EEWLKFIRSKKI-------GGWLNV-RDSKN--H--TDFKITYDI-YATPVLYVLDKNKVIIAKRIGYEN  133 (148)
T ss_dssp             ----------HHHHHHHHHHTC-------TTSEEE-ECTTC--C--CCHHHHHCC-CSSCEEEEECTTCBEEEESCCGGG
T ss_pred             ----------HHHHHHHHHcCC-------CCceEE-ecccc--c--hhHHHhcCc-CCCCEEEEECCCCcEEEecCCHHH
Confidence                      111111111100       002211 11110  0  000112244 234678999999999999999999


Q ss_pred             hHHHHhcCC
Q 020414          307 WQQIVQELP  315 (326)
Q Consensus       307 W~~lv~eLP  315 (326)
                      ..++++++-
T Consensus       134 ~~~~l~~l~  142 (148)
T 3hcz_A          134 LDDFLVQYE  142 (148)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888764

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=94.28  E-value=1.2  Score=34.78  Aligned_cols=62  Identities=13%  Similarity=0.111  Sum_probs=46.0

Q ss_pred             hccCCeeeeCCCceeehhhhcCcceeEEEec-CHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414          148 TLSRLPLRLSTNRIVELVQLRGTVRPVILAG-RKETVSLAIQKAERFRTDLLRRGVLLVPVIWG  210 (326)
Q Consensus       148 ~L~rL~V~l~~~r~v~L~qLRg~aRvVIvAG-~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~  210 (326)
                      .+-.+.+.- +++.+++.+++|..-+|...+ .=.++...+...+.+.+.+.+.|+.||.|..+
T Consensus         8 ~~P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d   70 (152)
T 3gl3_A            8 KAPDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLD   70 (152)
T ss_dssp             BCCCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             cCCceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECC
Confidence            344555555 788999999998754444333 34567778888888999999999999999875

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=93.45  E-value=1.3  Score=35.00  Aligned_cols=54  Identities=17%  Similarity=0.127  Sum_probs=40.1

Q ss_pred             CCCceeehhhhcCcceeEEEec-CHHHHHH-HHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414          157 STNRIVELVQLRGTVRPVILAG-RKETVSL-AIQKAERFRTDLLRRGVLLVPVIWG  210 (326)
Q Consensus       157 ~~~r~v~L~qLRg~aRvVIvAG-~~e~V~~-Al~~Ae~~r~~L~~rgVLVVPVv~~  210 (326)
                      .+++.+++.+++|..-+|...+ .=..+.. ++...+.+.+++.+.+|.+|-|.++
T Consensus        16 ~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~   71 (158)
T 3eyt_A           16 NSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTV   71 (158)
T ss_dssp             SCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECC
T ss_pred             cCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEec
Confidence            4679999999998654443333 3345666 5777788888888889999999885

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=92.77  E-value=1.5  Score=34.54  Aligned_cols=60  Identities=13%  Similarity=0.048  Sum_probs=43.2

Q ss_pred             CCeeee-CCCceeehhhhcCcceeEEE-ecCHHHHHH-HHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414          151 RLPLRL-STNRIVELVQLRGTVRPVIL-AGRKETVSL-AIQKAERFRTDLLRRGVLLVPVIWG  210 (326)
Q Consensus       151 rL~V~l-~~~r~v~L~qLRg~aRvVIv-AG~~e~V~~-Al~~Ae~~r~~L~~rgVLVVPVv~~  210 (326)
                      .+.+.- -+|+.+++.+++|..-+|.. +-.=..+.. .+...+.+.+++.+.||.||-|..+
T Consensus        11 ~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~   73 (160)
T 3lor_A           11 ELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSV   73 (160)
T ss_dssp             CCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECC
T ss_pred             CcccccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEecc
Confidence            344442 46799999999986544443 334456666 5778888888898899999999885

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=92.26  E-value=2.2  Score=35.17  Aligned_cols=60  Identities=12%  Similarity=0.127  Sum_probs=44.0

Q ss_pred             CCeeeeCCCceeehhhhcCcceeEEE-ecCHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414          151 RLPLRLSTNRIVELVQLRGTVRPVIL-AGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWG  210 (326)
Q Consensus       151 rL~V~l~~~r~v~L~qLRg~aRvVIv-AG~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~  210 (326)
                      .+.+.-.+|+.+++++++|..-+|.. |-.=..+...+...+.+.+++.+.|+.||-|..+
T Consensus        20 ~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d   80 (180)
T 3kij_A           20 AFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCN   80 (180)
T ss_dssp             GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECC
T ss_pred             ceEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence            34444447899999999997443333 2223367777888888889999999999999875

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=92.26  E-value=1.6  Score=36.44  Aligned_cols=65  Identities=9%  Similarity=0.081  Sum_probs=46.5

Q ss_pred             hhccCCeeeeCCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCC
Q 020414          147 ETLSRLPLRLSTNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWGE  211 (326)
Q Consensus       147 e~L~rL~V~l~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~  211 (326)
                      +.+-.+.+.-.+|+.+++.+++|..-+|...++ =..+...+...+.+.+++.+++|.||-|..+.
T Consensus        26 ~~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~   91 (190)
T 2vup_A           26 SSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQ   91 (190)
T ss_dssp             CSGGGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCC
T ss_pred             CcccCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCc
Confidence            334444444447899999999997554444332 34666777788888889999999999998863

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=91.89  E-value=2.1  Score=33.50  Aligned_cols=64  Identities=17%  Similarity=0.175  Sum_probs=46.4

Q ss_pred             hccCCeeeeCCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCC
Q 020414          148 TLSRLPLRLSTNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWGE  211 (326)
Q Consensus       148 ~L~rL~V~l~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~  211 (326)
                      .+-.+.+.-.+++.+++.+++|..-+|...++ -.++...+...+.+.+.+.+.++.+|-|..+.
T Consensus         7 ~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~   71 (154)
T 3kcm_A            7 PAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDE   71 (154)
T ss_dssp             BCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCT
T ss_pred             CCCCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCC
Confidence            34445555557899999999986554444333 35677777788888888988899999998853

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=91.89  E-value=1.1  Score=36.60  Aligned_cols=52  Identities=13%  Similarity=0.161  Sum_probs=39.0

Q ss_pred             CCceeehhhhcCcceeEEE-ecCHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414          158 TNRIVELVQLRGTVRPVIL-AGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWG  210 (326)
Q Consensus       158 ~~r~v~L~qLRg~aRvVIv-AG~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~  210 (326)
                      +|+.+++++++|..-+|.. |..-..+. .+...+.+.+++.+.||.||-|..+
T Consensus        21 ~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d   73 (171)
T 3cmi_A           21 KGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCN   73 (171)
T ss_dssp             TSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred             CCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECc
Confidence            7899999999996544433 22233566 6777778888899999999999885

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=91.52  E-value=2.6  Score=34.70  Aligned_cols=64  Identities=11%  Similarity=0.147  Sum_probs=45.8

Q ss_pred             hccCCeeeeCCCceeehhhhcCcceeEEEec-CHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCC
Q 020414          148 TLSRLPLRLSTNRIVELVQLRGTVRPVILAG-RKETVSLAIQKAERFRTDLLRRGVLLVPVIWGE  211 (326)
Q Consensus       148 ~L~rL~V~l~~~r~v~L~qLRg~aRvVIvAG-~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~  211 (326)
                      .+-.+.+.-.+|+.+++.+++|..-+|...+ .=..+...+...+.+.+++.++++.||-|..+.
T Consensus        26 ~~p~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~   90 (183)
T 2obi_A           26 SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQ   90 (183)
T ss_dssp             SGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCC
T ss_pred             cccceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCC
Confidence            3344555545789999999999654444333 234666777788888889999999999998853

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=91.40  E-value=4.3  Score=31.92  Aligned_cols=133  Identities=12%  Similarity=0.101  Sum_probs=77.9

Q ss_pred             hccCCeeeeCCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCcccccccCCCcc
Q 020414          148 TLSRLPLRLSTNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGLAP  226 (326)
Q Consensus       148 ~L~rL~V~l~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~~~kgfG~~~  226 (326)
                      .+-.+.+.-.+++.+++.+++|..-+|...++ =.++...+...+.+.+.+.+.+|.+|.|..++.  +           
T Consensus        13 ~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~--~-----------   79 (165)
T 3or5_A           13 PAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQ--L-----------   79 (165)
T ss_dssp             BCCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCC--H-----------
T ss_pred             CCCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCC--H-----------
Confidence            33445555557899999999986554444433 456777778888888899999999999987531  0           


Q ss_pred             cccccCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCCCCCc
Q 020414          227 KAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPD  306 (326)
Q Consensus       227 ~aa~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~G~Pp  306 (326)
                                +...+-.+..        .-.|.... +.++..+-+... ...|+ ..-+.++.+..||+|+.+-.|..+
T Consensus        80 ----------~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~-~~~~i-~~~P~~~lid~~G~i~~~~~g~~~  138 (165)
T 3or5_A           80 ----------PNVKNYMKTQ--------GIIYPVMM-ATPELIRAFNGY-IDGGI-TGIPTSFVIDASGNVSGVIVGPRS  138 (165)
T ss_dssp             ----------HHHHHHHHHH--------TCCSCEEE-CCHHHHHHHHTT-STTCS-CSSSEEEEECTTSBEEEEECSCCC
T ss_pred             ----------HHHHHHHHHc--------CCCCceEe-cCHHHHHHHhhh-hccCC-CCCCeEEEECCCCcEEEEEcCCCC
Confidence                      0111000111        11222221 111111111000 01144 235678999999999999999888


Q ss_pred             hHHHHhcC
Q 020414          307 WQQIVQEL  314 (326)
Q Consensus       307 W~~lv~eL  314 (326)
                      -+++.+.|
T Consensus       139 ~~~l~~~l  146 (165)
T 3or5_A          139 KADFDRIV  146 (165)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766554

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=91.24  E-value=1.9  Score=34.02  Aligned_cols=132  Identities=5%  Similarity=0.052  Sum_probs=76.0

Q ss_pred             hhhhccCCeeeeCCCceeehh--hhcCcceeEEEecC-HHH--HHHHHHHHHHHHHHH-hhcCcEEEEEEeCCCCCcccc
Q 020414          145 RDETLSRLPLRLSTNRIVELV--QLRGTVRPVILAGR-KET--VSLAIQKAERFRTDL-LRRGVLLVPVIWGEGRAPQVE  218 (326)
Q Consensus       145 REe~L~rL~V~l~~~r~v~L~--qLRg~aRvVIvAG~-~e~--V~~Al~~Ae~~r~~L-~~rgVLVVPVv~~~~~~~~~~  218 (326)
                      -++.+-.+.+.-.+|+.+++.  +++|..-+|....+ =..  +...+...+.+.+++ .+.|+-||-|..+..  +   
T Consensus         7 ~G~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~--~---   81 (150)
T 3fw2_A            7 IGKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVD--K---   81 (150)
T ss_dssp             TTSBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSC--H---
T ss_pred             CCCcCCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCC--H---
Confidence            344455556665688999999  99986444433322 234  666777777888888 888999999988531  0   


Q ss_pred             cccCCCcccccccCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceee
Q 020414          219 KKGFGLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVR  298 (326)
Q Consensus       219 ~kgfG~~~~aa~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr  298 (326)
                                        +++.    ....    ...-.|... .+...+..-+.   +.-|+. .-+.++.+..||+|+
T Consensus        82 ------------------~~~~----~~~~----~~~~~~~~~-~d~~~~~~~~~---~~~~v~-~~P~~~lid~~G~i~  130 (150)
T 3fw2_A           82 ------------------QQWK----DAIK----RDTLDWEQV-CDFGGLNSEVA---KQYSIY-KIPANILLSSDGKIL  130 (150)
T ss_dssp             ------------------HHHH----HHHH----HTTCCSEEE-CCSCGGGCHHH---HHTTCC-SSSEEEEECTTSBEE
T ss_pred             ------------------HHHH----HHHH----HhCCCceEE-EcCcccchHHH---HHcCCC-ccCeEEEECCCCEEE
Confidence                              1111    1110    011233322 22222222222   233552 356789999999999


Q ss_pred             ecCCCCCchHHHHh
Q 020414          299 RSGKGMPDWQQIVQ  312 (326)
Q Consensus       299 ~SG~G~PpW~~lv~  312 (326)
                      .+..+.....+.++
T Consensus       131 ~~~~~~~~l~~~l~  144 (150)
T 3fw2_A          131 AKNLRGEELKKKIE  144 (150)
T ss_dssp             EESCCHHHHHHHHH
T ss_pred             EccCCHHHHHHHHH
Confidence            99874444444444

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=91.13  E-value=3.9  Score=32.43  Aligned_cols=61  Identities=8%  Similarity=0.150  Sum_probs=44.1

Q ss_pred             CCeeeeCCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCC
Q 020414          151 RLPLRLSTNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWGE  211 (326)
Q Consensus       151 rL~V~l~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~  211 (326)
                      .+.+.-.+|+.+++.+++|..-+|....+ =..+...+...+.+.+++.+.|+.||-|..+.
T Consensus        14 ~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~   75 (170)
T 2p5q_A           14 DFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQ   75 (170)
T ss_dssp             GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCT
T ss_pred             ceEEEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCC
Confidence            34444447899999999986544443332 23677777788888889999999999998853

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=91.00  E-value=2.6  Score=32.86  Aligned_cols=128  Identities=14%  Similarity=0.142  Sum_probs=76.9

Q ss_pred             cCCeeeeCCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCcccccccCCCcccc
Q 020414          150 SRLPLRLSTNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGLAPKA  228 (326)
Q Consensus       150 ~rL~V~l~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~~~kgfG~~~~a  228 (326)
                      -.+.+.--+|+.+++.++++..-+|...++ =.++...+...+.+.+.+.+.++.||.|..+.++.              
T Consensus         9 p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~--------------   74 (153)
T 2l5o_A            9 PAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPI--------------   74 (153)
T ss_dssp             CSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCH--------------
T ss_pred             CCcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCH--------------
Confidence            344444447899999999987655555433 34566677777778888888899999987642111              


Q ss_pred             cccCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCCCCCchH
Q 020414          229 AAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWQ  308 (326)
Q Consensus       229 a~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~G~PpW~  308 (326)
                              ++..    .....    -.-.|   |+..+.-.. +   .+.-|+. .-+.++.+..||+|+..-.|.+++.
T Consensus        75 --------~~~~----~~~~~----~~~~~---~~~~d~~~~-~---~~~~~i~-~~P~~~lid~~G~i~~~~~g~~~~~  130 (153)
T 2l5o_A           75 --------ESVR----QYVKD----YGLPF---TVMYDADKA-V---GQAFGTQ-VYPTSVLIGKKGEILKTYVGEPDFG  130 (153)
T ss_dssp             --------HHHH----HHHHH----TTCCS---EEEECSSCH-H---HHHHTCC-SSSEEEEECSSSCCCEEEESSCCHH
T ss_pred             --------HHHH----HHHHH----cCCCc---eEEcCchHH-H---HHHcCCC-ccCeEEEECCCCcEEEEEcCCCCHH
Confidence                    1111    11100    01112   222221111 1   1222442 2467889999999999989999998


Q ss_pred             HHHhcCC
Q 020414          309 QIVQELP  315 (326)
Q Consensus       309 ~lv~eLP  315 (326)
                      ++.+.|-
T Consensus       131 ~l~~~l~  137 (153)
T 2l5o_A          131 KLYQEID  137 (153)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877653

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=91.00  E-value=5.2  Score=32.60  Aligned_cols=133  Identities=8%  Similarity=-0.010  Sum_probs=77.6

Q ss_pred             hhccCCeeeeC--CCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCc------EEEEEEeCCCCCccc
Q 020414          147 ETLSRLPLRLS--TNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGV------LLVPVIWGEGRAPQV  217 (326)
Q Consensus       147 e~L~rL~V~l~--~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgV------LVVPVv~~~~~~~~~  217 (326)
                      +.+-.+.+.--  +++.+++.+++|..-+|...++ =.++...+..-+.+.+++.++|+      .+|-|..+..+..  
T Consensus        35 ~~~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~--  112 (183)
T 3lwa_A           35 QQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRD--  112 (183)
T ss_dssp             CCCCCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHH--
T ss_pred             CCCCceeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHH--
Confidence            44556666666  8899999999996555544443 34577777788888899999998      9999988531111  


Q ss_pred             ccccCCCcccccccCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCcee
Q 020414          218 EKKGFGLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRV  297 (326)
Q Consensus       218 ~~kgfG~~~~aa~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRV  297 (326)
                                          ...    .....    -.-.|... .+.+.   .+..+...-++ ..-+.++.+..||+|
T Consensus       113 --------------------~~~----~~~~~----~~~~~~~~-~d~~~---~~~~~~~~~~v-~~~P~~~lid~~G~i  159 (183)
T 3lwa_A          113 --------------------IAQ----DFVTD----NGLDYPSI-YDPPF---MTAASLGGVPA-SVIPTTIVLDKQHRP  159 (183)
T ss_dssp             --------------------HHH----HHHHH----TTCCSCEE-ECTTC---GGGGGTTTCCT-TCCSEEEEECTTSCE
T ss_pred             --------------------HHH----HHHHH----cCCCccEE-ECCcc---hHHHHhccCCC-CCCCeEEEECCCCcE
Confidence                                011    11000    01112211 11110   00000000012 234668899999999


Q ss_pred             eecCCCCCchHHHHhcC
Q 020414          298 RRSGKGMPDWQQIVQEL  314 (326)
Q Consensus       298 r~SG~G~PpW~~lv~eL  314 (326)
                      +.+-.|.++..++.+.|
T Consensus       160 ~~~~~g~~~~~~l~~~l  176 (183)
T 3lwa_A          160 AAVFLREVTSKDVLDVA  176 (183)
T ss_dssp             EEEECSCCCHHHHHHHH
T ss_pred             EEEEcCCCCHHHHHHHH
Confidence            99999998887776654

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=90.95  E-value=1.8  Score=33.38  Aligned_cols=136  Identities=10%  Similarity=0.094  Sum_probs=80.5

Q ss_pred             hhhhhhccCCeeeeCCCceeehh--hhcCcceeEEEecC-HHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeCCCCCcccc
Q 020414          143 ISRDETLSRLPLRLSTNRIVELV--QLRGTVRPVILAGR-KETVSLAIQKAERFRTDL-LRRGVLLVPVIWGEGRAPQVE  218 (326)
Q Consensus       143 i~REe~L~rL~V~l~~~r~v~L~--qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L-~~rgVLVVPVv~~~~~~~~~~  218 (326)
                      +.-++.+-.+.+.-.+++.+++.  +++|..-+|...++ =.++...+...+.+.+.+ .+.|+.+|.|..+...     
T Consensus         5 ~~~g~~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~-----   79 (148)
T 3fkf_A            5 VTVGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDR-----   79 (148)
T ss_dssp             CCTTSBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCH-----
T ss_pred             ccCCCcCCCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCH-----
Confidence            34455556666666688999999  99886544444432 234667777777888888 8889999999885320     


Q ss_pred             cccCCCcccccccCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceee
Q 020414          219 KKGFGLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVR  298 (326)
Q Consensus       219 ~kgfG~~~~aa~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr  298 (326)
                                        +++.    ....    ...-.|... .+...|..-+.+   .-|+. .-+.++.+..||+|.
T Consensus        80 ------------------~~~~----~~~~----~~~~~~~~~-~d~~~~~~~~~~---~~~v~-~~P~~~lid~~G~i~  128 (148)
T 3fkf_A           80 ------------------EAWE----TAIK----KDTLSWDQV-CDFTGLSSETAK---QYAIL-TLPTNILLSPTGKIL  128 (148)
T ss_dssp             ------------------HHHH----HHHH----HTTCCSEEE-CCSCGGGCHHHH---HTTCC-SSSEEEEECTTSBEE
T ss_pred             ------------------HHHH----HHHH----HcCCCceEE-EccCCcchHHHH---hcCCC-CcCEEEEECCCCeEE
Confidence                              1111    1110    011233322 222222222222   23442 356789999999999


Q ss_pred             ecCCCCCchHHHHhcC
Q 020414          299 RSGKGMPDWQQIVQEL  314 (326)
Q Consensus       299 ~SG~G~PpW~~lv~eL  314 (326)
                      .+..+.....+.++++
T Consensus       129 ~~~~~~~~l~~~l~~l  144 (148)
T 3fkf_A          129 ARDIQGEALTGKLKEL  144 (148)
T ss_dssp             EESCCHHHHHHHHHHH
T ss_pred             EecCCHHHHHHHHHHH
Confidence            9988555555555543

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=90.66  E-value=2.2  Score=33.25  Aligned_cols=126  Identities=10%  Similarity=0.135  Sum_probs=71.5

Q ss_pred             CCeeeeCCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCcccccccCCCccccc
Q 020414          151 RLPLRLSTNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGLAPKAA  229 (326)
Q Consensus       151 rL~V~l~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~~~kgfG~~~~aa  229 (326)
                      .+.+.-.+|+.+++.+++|..-+|...++ =.++...+...+.+.+.+.+.++.+|-|..+...                
T Consensus        12 ~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~----------------   75 (152)
T 2lja_A           12 SFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNK----------------   75 (152)
T ss_dssp             SCEEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCH----------------
T ss_pred             ccEeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcH----------------
Confidence            45555557899999999986555544432 2345555555566777777889999998875311                


Q ss_pred             ccCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCCCCCchHH
Q 020414          230 AALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQ  309 (326)
Q Consensus       230 ~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~G~PpW~~  309 (326)
                             +++.+-.+..        .-.|.-...+.+.   -+.   +.-|+. .-+.++.+..||+|..+..|.++-++
T Consensus        76 -------~~~~~~~~~~--------~~~~~~~~~d~~~---~~~---~~~~v~-~~P~~~lid~~G~i~~~~~g~~~~~~  133 (152)
T 2lja_A           76 -------KAWENMVTKD--------QLKGIQLHMGTDR---TFM---DAYLIN-GIPRFILLDRDGKIISANMTRPSDPK  133 (152)
T ss_dssp             -------HHHHHHHHHH--------TCCSEEEECSSCT---HHH---HHTTCC-SSCCEEEECTTSCEEESSCCCTTCHH
T ss_pred             -------HHHHHHHHhc--------CCCCceeecCcch---hHH---HHcCcC-CCCEEEEECCCCeEEEccCCCCCHHH
Confidence                   0111110111        1122222222210   111   223442 23568899999999999999887666


Q ss_pred             HHhcC
Q 020414          310 IVQEL  314 (326)
Q Consensus       310 lv~eL  314 (326)
                      +.+.|
T Consensus       134 l~~~l  138 (152)
T 2lja_A          134 TAEKF  138 (152)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65443

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=90.61  E-value=3.5  Score=34.02  Aligned_cols=65  Identities=12%  Similarity=0.136  Sum_probs=46.6

Q ss_pred             hhccCCeeeeCCCceeehhhhcCcceeEEEec-CHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCC
Q 020414          147 ETLSRLPLRLSTNRIVELVQLRGTVRPVILAG-RKETVSLAIQKAERFRTDLLRRGVLLVPVIWGE  211 (326)
Q Consensus       147 e~L~rL~V~l~~~r~v~L~qLRg~aRvVIvAG-~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~  211 (326)
                      ..+-...+.-.+|+.+++.+++|..-+|..-+ .=..+...+..-+.+.+++.++|+-||-|..+.
T Consensus        27 ~~~p~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~   92 (181)
T 2p31_A           27 QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQ   92 (181)
T ss_dssp             CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCC
T ss_pred             CccCceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcC
Confidence            34445555555789999999999654444332 234677777788888889999999999998753

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=90.41  E-value=5.9  Score=31.80  Aligned_cols=62  Identities=10%  Similarity=-0.058  Sum_probs=45.8

Q ss_pred             ccCCeeeeCCCceeehhhhcCcceeEEEec---CHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414          149 LSRLPLRLSTNRIVELVQLRGTVRPVILAG---RKETVSLAIQKAERFRTDLLRRGVLLVPVIWG  210 (326)
Q Consensus       149 L~rL~V~l~~~r~v~L~qLRg~aRvVIvAG---~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~  210 (326)
                      +-.+.+.-.+|+.+++.+++|...+||.-.   .-..+...+..-+.+.+++.+.||-||-|..+
T Consensus         8 ~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d   72 (161)
T 3drn_A            8 APLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSD   72 (161)
T ss_dssp             CCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESC
T ss_pred             CCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            334455555889999999999874444333   34566777888888889999999999998773

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=90.25  E-value=4.6  Score=32.00  Aligned_cols=63  Identities=13%  Similarity=0.217  Sum_probs=45.5

Q ss_pred             ccCCeeeeCCCceeehhhhcCcceeEEEec-CHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCC
Q 020414          149 LSRLPLRLSTNRIVELVQLRGTVRPVILAG-RKETVSLAIQKAERFRTDLLRRGVLLVPVIWGE  211 (326)
Q Consensus       149 L~rL~V~l~~~r~v~L~qLRg~aRvVIvAG-~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~  211 (326)
                      +-.+.+.-.+|+.+++.+++|..-+|.... .=..+...+...+.+.+++.++|+-||-|..+.
T Consensus        11 ~p~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~   74 (169)
T 2v1m_A           11 IYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQ   74 (169)
T ss_dssp             GGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCC
T ss_pred             cccceeecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCc
Confidence            344455555789999999999654444332 233666777788888889999999999998853

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=90.17  E-value=5.5  Score=31.08  Aligned_cols=125  Identities=16%  Similarity=0.149  Sum_probs=74.0

Q ss_pred             CCeeeeCCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCcccccccCCCccccc
Q 020414          151 RLPLRLSTNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGLAPKAA  229 (326)
Q Consensus       151 rL~V~l~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~~~kgfG~~~~aa  229 (326)
                      .+.+.-.+|+.+++.+++|..-+|....+ =.++...+...+.+.+.+.+.++.||.|..+...                
T Consensus         8 ~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~----------------   71 (151)
T 2f9s_A            8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESK----------------   71 (151)
T ss_dssp             CCEEECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCH----------------
T ss_pred             cceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCH----------------
Confidence            33444447899999999986544444332 3567777777778888888889999999885310                


Q ss_pred             ccCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCCCCCchHH
Q 020414          230 AALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQ  309 (326)
Q Consensus       230 ~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~G~PpW~~  309 (326)
                             +...    .....    ..-.|   |+..+.-..    ..+.-|+. .-+.++.+..||+|+.+-.|.++...
T Consensus        72 -------~~~~----~~~~~----~~~~~---~~~~d~~~~----~~~~~~v~-~~P~~~lid~~G~i~~~~~G~~~~~~  128 (151)
T 2f9s_A           72 -------IAVH----NFMKS----YGVNF---PVVLDTDRQ----VLDAYDVS-PLPTTFLINPEGKVVKVVTGTMTESM  128 (151)
T ss_dssp             -------HHHH----HHHHH----HTCCS---CEEEETTSH----HHHHTTCC-SSCEEEEECTTSEEEEEEESCCCHHH
T ss_pred             -------HHHH----HHHHH----cCCCc---eEEECCchH----HHHhcCCC-CCCeEEEECCCCcEEEEEeCCCCHHH
Confidence                   0111    11100    01112   222221111    11233552 34678889999999999889888776


Q ss_pred             HHhcC
Q 020414          310 IVQEL  314 (326)
Q Consensus       310 lv~eL  314 (326)
                      +.+.|
T Consensus       129 l~~~l  133 (151)
T 2f9s_A          129 IHDYM  133 (151)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=89.98  E-value=5.3  Score=31.77  Aligned_cols=131  Identities=15%  Similarity=0.028  Sum_probs=73.9

Q ss_pred             eeeeCCCceeehhhhcCcceeEEEecC-HHH-HHHHHHHHHHHHHHHhh----cCcEEEEEEeCCCCCcccccccCCCcc
Q 020414          153 PLRLSTNRIVELVQLRGTVRPVILAGR-KET-VSLAIQKAERFRTDLLR----RGVLLVPVIWGEGRAPQVEKKGFGLAP  226 (326)
Q Consensus       153 ~V~l~~~r~v~L~qLRg~aRvVIvAG~-~e~-V~~Al~~Ae~~r~~L~~----rgVLVVPVv~~~~~~~~~~~kgfG~~~  226 (326)
                      .+.-.+|+.+++.+++|..-+|..-++ =.. +...+..-+.+.+++.+    .+|-||-|..+......          
T Consensus        10 ~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~----------   79 (171)
T 2rli_A           10 HLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDV----------   79 (171)
T ss_dssp             EEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCH----------
T ss_pred             EEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCH----------
Confidence            333347899999999986444333333 233 77777777778888875    58999998885321110          


Q ss_pred             cccccCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCC--CC------------CcEEEEEe
Q 020414          227 KAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVT--PG------------EDVYIILR  292 (326)
Q Consensus       227 ~aa~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~--~~------------~gVyi~Lr  292 (326)
                                +    ..+....    .-...|....-..++    ..+-.+.-|+.  |.            .+.++.+.
T Consensus        80 ----------~----~~~~~~~----~~~~~~~~l~~~~~~----~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid  137 (171)
T 2rli_A           80 ----------E----AMARYVQ----DFHPRLLGLTGSTKQ----VAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLN  137 (171)
T ss_dssp             ----------H----HHHHHHH----TTCTTCCEEECCHHH----HHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEEC
T ss_pred             ----------H----HHHHHHH----HcCCCeEEEeCCHHH----HHHHHHHhCeEEEecCCCCCCCeEEeccceEEEEC
Confidence                      0    0111111    112234333222111    11111233441  11            12689999


Q ss_pred             eCceeeecCCCCCchHHHHhcCC
Q 020414          293 LDGRVRRSGKGMPDWQQIVQELP  315 (326)
Q Consensus       293 lDGRVr~SG~G~PpW~~lv~eLP  315 (326)
                      .||+|+.+-.|..+..++.+.|-
T Consensus       138 ~~G~i~~~~~g~~~~~~l~~~l~  160 (171)
T 2rli_A          138 PDGLFTDYYGRSRSAEQISDSVR  160 (171)
T ss_dssp             TTSCEEEEEESSCCHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCHHHHHHHHH
Confidence            99999999889888887776653

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=89.83  E-value=0.6  Score=36.66  Aligned_cols=130  Identities=7%  Similarity=0.020  Sum_probs=69.6

Q ss_pred             hccCCeeeeCCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCcccccccCCCcc
Q 020414          148 TLSRLPLRLSTNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGLAP  226 (326)
Q Consensus       148 ~L~rL~V~l~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~~~kgfG~~~  226 (326)
                      .+-.+.+ -.+++.+++++++|..-+|...++ -..+...+...+.+.+++.+.++.||-|.++..  +           
T Consensus        12 ~~P~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~--~-----------   77 (143)
T 4fo5_A           12 LAPRIEF-LGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEK--E-----------   77 (143)
T ss_dssp             BCCCCCC------CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSC--H-----------
T ss_pred             cCCceEE-cCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCC--H-----------
Confidence            3334445 236789999999996444433333 344666667777777788878999999988532  0           


Q ss_pred             cccccCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCCCCCc
Q 020414          227 KAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPD  306 (326)
Q Consensus       227 ~aa~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~G~Pp  306 (326)
                                +++.+-.+..        .-.|-..-.+...|..=+.   +.-|+. .-+.++.+..||+|+.+..+...
T Consensus        78 ----------~~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~---~~~~v~-~~P~~~lid~~G~i~~~~~~~~~  135 (143)
T 4fo5_A           78 ----------SIFTETVKID--------KLDLSTQFHEGLGKESELY---KKYDLR-KGFKNFLINDEGVIIAANVTPEK  135 (143)
T ss_dssp             ----------HHHHHHHHHH--------TCCGGGEEECTTGGGSHHH---HHTTGG-GCCCEEEECTTSBEEEESCCHHH
T ss_pred             ----------HHHHHHHHHh--------CCCCceeeecccccchHHH---HHcCCC-CCCcEEEECCCCEEEEccCCHHH
Confidence                      1111111111        1122111122222221111   223442 23458899999999999887655


Q ss_pred             hHHHHhc
Q 020414          307 WQQIVQE  313 (326)
Q Consensus       307 W~~lv~e  313 (326)
                      ..+++++
T Consensus       136 l~~~l~~  142 (143)
T 4fo5_A          136 LTEILKA  142 (143)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHHh
Confidence            5555554

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=89.74  E-value=3.1  Score=33.11  Aligned_cols=121  Identities=13%  Similarity=0.143  Sum_probs=75.4

Q ss_pred             hhhccCCeeeeCCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCcccccccCCC
Q 020414          146 DETLSRLPLRLSTNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGL  224 (326)
Q Consensus       146 Ee~L~rL~V~l~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~~~kgfG~  224 (326)
                      .+.+-.+.+.-.+++.+++.+++|..-+|...++ =.++...+...+.+.+++.+.++.+|.|..+.....         
T Consensus        18 G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~---------   88 (158)
T 3hdc_A           18 GALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPE---------   88 (158)
T ss_dssp             TSBCCCCEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCG---------
T ss_pred             CCcCCCceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHH---------
Confidence            4444555565558899999999986544444433 346777777888888889888999999988541111         


Q ss_pred             cccccccCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCCCC
Q 020414          225 APKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGM  304 (326)
Q Consensus       225 ~~~aa~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~G~  304 (326)
                                    |-+           .....|   |+..+.-.    +-.+.-|+. .-+.++.+..||+|+.+-.|.
T Consensus        89 --------------~~~-----------~~~~~~---~~~~d~~~----~~~~~~~v~-~~P~~~lid~~G~i~~~~~G~  135 (158)
T 3hdc_A           89 --------------KYR-----------RAPVSF---NFLSDATG----QVQQRYGAN-RLPDTFIVDRKGIIRQRVTGG  135 (158)
T ss_dssp             --------------GGG-----------GCCCSC---EEEECTTS----HHHHHTTCC-SSSEEEEECTTSBEEEEEESC
T ss_pred             --------------HHH-----------HcCCCc---eEEECchH----HHHHHhCCC-CcceEEEEcCCCCEEEEEeCC
Confidence                          100           001112   21111100    111233442 346789999999999999999


Q ss_pred             CchH
Q 020414          305 PDWQ  308 (326)
Q Consensus       305 PpW~  308 (326)
                      .+|+
T Consensus       136 ~~~~  139 (158)
T 3hdc_A          136 IEWD  139 (158)
T ss_dssp             CCTT
T ss_pred             Cccc
Confidence            9986

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=89.71  E-value=5.9  Score=32.24  Aligned_cols=63  Identities=14%  Similarity=0.126  Sum_probs=44.3

Q ss_pred             ccCCeeeeCCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCC
Q 020414          149 LSRLPLRLSTNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWGE  211 (326)
Q Consensus       149 L~rL~V~l~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~  211 (326)
                      +-.+.+.-.+|+.+++.+++|..-+|...++ =..+...+...+.+.+.+.+.++-||-|..+.
T Consensus        40 ~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~  103 (186)
T 1jfu_A           40 LPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDT  103 (186)
T ss_dssp             CCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCC
T ss_pred             CCCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCC
Confidence            3344444447899999999987555544433 34666677777777888888899999998863

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=89.67  E-value=1.5  Score=35.28  Aligned_cols=58  Identities=9%  Similarity=0.081  Sum_probs=41.3

Q ss_pred             CCeeeeCCCceeehhhhcCcceeEEEecC--HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414          151 RLPLRLSTNRIVELVQLRGTVRPVILAGR--KETVSLAIQKAERFRTDLLRRGVLLVPVIWG  210 (326)
Q Consensus       151 rL~V~l~~~r~v~L~qLRg~aRvVIvAG~--~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~  210 (326)
                      ...+.-.+|+.+++.+++|..-++....+  -..+...+..-+.+.+++  .++-||-|..+
T Consensus        26 ~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~~~~vv~is~d   85 (167)
T 2jsy_A           26 DFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--GDVNVYTISAD   85 (167)
T ss_dssp             CCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--SSCEEEEEECS
T ss_pred             ceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--CCCEEEEEECC
Confidence            34444447899999999987544443333  467777777777777777  78999998875

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=89.59  E-value=0.8  Score=38.28  Aligned_cols=61  Identities=10%  Similarity=0.065  Sum_probs=42.8

Q ss_pred             CCeeeeCCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCC
Q 020414          151 RLPLRLSTNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWGE  211 (326)
Q Consensus       151 rL~V~l~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~  211 (326)
                      ...+.-.+|+.++|++++|..-+|..-++ =..+...+...+.+.+++.+.|+.||-|.++.
T Consensus        28 ~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~   89 (187)
T 3dwv_A           28 DFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQ   89 (187)
T ss_dssp             GSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCC
T ss_pred             CeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcc
Confidence            34444447899999999996544433222 22366667777888889999999999998863

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=89.49  E-value=5.1  Score=31.50  Aligned_cols=123  Identities=11%  Similarity=0.067  Sum_probs=72.7

Q ss_pred             CCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCcccccccCCCcccccccCCCC
Q 020414          157 STNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGLAPKAAAALPSI  235 (326)
Q Consensus       157 ~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~~~kgfG~~~~aa~a~ps~  235 (326)
                      .+|+.+++.+++|..-+|...++ =..+...+..-+.+.+++.+.++.||.|..+..  .                    
T Consensus        12 ~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~--~--------------------   69 (151)
T 3raz_A           12 KDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTS--D--------------------   69 (151)
T ss_dssp             TTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCH--H--------------------
T ss_pred             cCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCh--H--------------------
Confidence            47899999999996554444443 244666666777777778788999999988421  0                    


Q ss_pred             chhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCC-CCCCcEEEEEeeCceeeecCCCCCchHHHHhcC
Q 020414          236 GEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGV-TPGEDVYIILRLDGRVRRSGKGMPDWQQIVQEL  314 (326)
Q Consensus       236 ~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv-~~~~gVyi~LrlDGRVr~SG~G~PpW~~lv~eL  314 (326)
                        +.    +.....    -.-.|.......+.-..    -.+.-|. ...-+.++.+..||+|+.+-.|..+.+++.+.|
T Consensus        70 --~~----~~~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  135 (151)
T 3raz_A           70 --NI----GNFLKQ----TPVSYPIWRYTGANSRN----FMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAV  135 (151)
T ss_dssp             --HH----HHHHHH----SCCSSCEEEECCSCHHH----HHHTTTCCSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHH
T ss_pred             --HH----HHHHHH----cCCCCceEecCccchHH----HHHHhCCccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHH
Confidence              00    011100    11122222111111111    1122231 123467899999999999999999988887665


Q ss_pred             C
Q 020414          315 P  315 (326)
Q Consensus       315 P  315 (326)
                      -
T Consensus       136 ~  136 (151)
T 3raz_A          136 K  136 (151)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=89.16  E-value=6.4  Score=30.96  Aligned_cols=129  Identities=9%  Similarity=0.011  Sum_probs=75.6

Q ss_pred             eeCCCceeehhhhcCcceeEEEecC-HH-HHHHHHHHHHHHHHHHhh----cCcEEEEEEeCCCCCcccccccCCCcccc
Q 020414          155 RLSTNRIVELVQLRGTVRPVILAGR-KE-TVSLAIQKAERFRTDLLR----RGVLLVPVIWGEGRAPQVEKKGFGLAPKA  228 (326)
Q Consensus       155 ~l~~~r~v~L~qLRg~aRvVIvAG~-~e-~V~~Al~~Ae~~r~~L~~----rgVLVVPVv~~~~~~~~~~~kgfG~~~~a  228 (326)
                      .-.+|+.+++.+++|..-+|....+ =. .+...+...+.+.+++.+    .++-||-|..+......            
T Consensus         9 ~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~------------   76 (164)
T 2ggt_A            9 TTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTK------------   76 (164)
T ss_dssp             EETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCH------------
T ss_pred             EeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCH------------
Confidence            3347899999999986544443332 23 377777777888888877    48999988885321110            


Q ss_pred             cccCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCC--C-----CC-------cEEEEEeeC
Q 020414          229 AAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVT--P-----GE-------DVYIILRLD  294 (326)
Q Consensus       229 a~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~--~-----~~-------gVyi~LrlD  294 (326)
                                 + ..+....    .-...|...+-+.+.-.+    -.+.-|+.  |     +.       ..++.+..|
T Consensus        77 -----------~-~~~~~~~----~~~~~~~~l~~~~d~~~~----~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~  136 (164)
T 2ggt_A           77 -----------E-AIANYVK----EFSPKLVGLTGTREEVDQ----VARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPD  136 (164)
T ss_dssp             -----------H-HHHHHHH----TTCSSCEEEECCHHHHHH----HHHTTTCCEEEEEECTTSCEEEEECCEEEEECTT
T ss_pred             -----------H-HHHHHHH----HcCCCeEEEeCCHHHHHH----HHHhcCeEEEecCCCCCCCeeEeccceEEEECCC
Confidence                       0 1111111    112345444333222111    11233441  2     11       168899999


Q ss_pred             ceeeecCCCCCchHHHHhcCC
Q 020414          295 GRVRRSGKGMPDWQQIVQELP  315 (326)
Q Consensus       295 GRVr~SG~G~PpW~~lv~eLP  315 (326)
                      |+|+.+-.|.++..++.+.|.
T Consensus       137 G~i~~~~~g~~~~~~l~~~l~  157 (164)
T 2ggt_A          137 GEFLDYFGQNKRKGEIAASIA  157 (164)
T ss_dssp             SCEEEEEETTCCHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHH
Confidence            999999999888888877653

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=88.72  E-value=6.3  Score=32.57  Aligned_cols=66  Identities=11%  Similarity=0.143  Sum_probs=47.0

Q ss_pred             hhhccCCeeeeCCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCC
Q 020414          146 DETLSRLPLRLSTNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWGE  211 (326)
Q Consensus       146 Ee~L~rL~V~l~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~  211 (326)
                      .+.+-.+.+.-.+|+.+++.+++|..-+|..-++ =..+...+...+.+.+++.++|+-||.|..+.
T Consensus        26 g~~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~   92 (185)
T 2gs3_A           26 ARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQ   92 (185)
T ss_dssp             CCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCT
T ss_pred             CCCcCCceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcc
Confidence            4445555555557899999999996444433322 23566777778888888999999999998853

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=88.27  E-value=7.6  Score=30.50  Aligned_cols=128  Identities=12%  Similarity=0.040  Sum_probs=74.9

Q ss_pred             CCeeeeCCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCcccccccCCCccccc
Q 020414          151 RLPLRLSTNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGLAPKAA  229 (326)
Q Consensus       151 rL~V~l~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~~~kgfG~~~~aa  229 (326)
                      .+.+.-.+|+.+++.+++|..-+|...++ =..+...+...+.+.+.+.+.++.|+-|..+..  .              
T Consensus        11 ~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~--~--------------   74 (152)
T 2lrn_A           11 AITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRR--E--------------   74 (152)
T ss_dssp             CCEEECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSC--H--------------
T ss_pred             CceeEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCC--H--------------
Confidence            34444447899999999986554444332 345777777778888888888999999987521  0              


Q ss_pred             ccCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCCCCCchHH
Q 020414          230 AALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQ  309 (326)
Q Consensus       230 ~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~G~PpW~~  309 (326)
                             +++.+-.+.        ....|.... +...|..-+.   +.-|+. .-+.++.+..||+|+.+..+.....+
T Consensus        75 -------~~~~~~~~~--------~~~~~~~~~-d~~~~~~~~~---~~~~v~-~~P~~~lid~~G~i~~~~~~~~~l~~  134 (152)
T 2lrn_A           75 -------EDWKKAIEE--------DKSYWNQVL-LQKDDVKDVL---ESYCIV-GFPHIILVDPEGKIVAKELRGDDLYN  134 (152)
T ss_dssp             -------HHHHHHHHH--------HTCCSEEEE-ECHHHHHHHH---HHTTCC-SSCEEEEECTTSEEEEECCCTTHHHH
T ss_pred             -------HHHHHHHHH--------hCCCCeEEe-cccchhHHHH---HHhCCC-cCCeEEEECCCCeEEEeeCCHHHHHH
Confidence                   111111111        112343322 2223322222   334552 24678899999999999866555555


Q ss_pred             HHhcC
Q 020414          310 IVQEL  314 (326)
Q Consensus       310 lv~eL  314 (326)
                      .+++|
T Consensus       135 ~l~~l  139 (152)
T 2lrn_A          135 TVEKF  139 (152)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=88.21  E-value=4.4  Score=31.66  Aligned_cols=129  Identities=12%  Similarity=0.064  Sum_probs=74.8

Q ss_pred             hhhccCCeeeeCCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCcccccccCCC
Q 020414          146 DETLSRLPLRLSTNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGL  224 (326)
Q Consensus       146 Ee~L~rL~V~l~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~~~kgfG~  224 (326)
                      +..+-.+.+.-.+++.+++.+++ ..-+|...++ =.++...+...+.+.+++   ++-+|-|..+..+.+         
T Consensus         8 g~~~p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~---~v~~v~v~~d~~~~~---------   74 (154)
T 3ia1_A            8 GEPLPDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET---GVPFYVISREPRDTR---------   74 (154)
T ss_dssp             BEECCCCCEECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH---CCCEEEEECCTTCCH---------
T ss_pred             CCcCCceEEECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc---CCeEEEEeCCCcccH---------
Confidence            34455556666688999999998 4333333333 346667777777777777   788888877421111         


Q ss_pred             cccccccCCCCchhHHHHhHHHhhhhccccccceEEEeeChh--hHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCC
Q 020414          225 APKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPS--EWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGK  302 (326)
Q Consensus       225 ~~~aa~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~--eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~  302 (326)
                                  ++.    +....    ....   -+|+..+  +...-+   .+.-|+. .-+.++.+..||+|+.+-.
T Consensus        75 ------------~~~----~~~~~----~~~~---~~~~~~d~~~~~~~~---~~~~~v~-~~P~~~lid~~G~i~~~~~  127 (154)
T 3ia1_A           75 ------------EVV----LEYMK----TYPR---FIPLLASDRDRPHEV---AARFKVL-GQPWTFVVDREGKVVALFA  127 (154)
T ss_dssp             ------------HHH----HHHHT----TCTT---EEECBCCSSCCHHHH---HTTSSBC-SSCEEEEECTTSEEEEEEE
T ss_pred             ------------HHH----HHHHH----HcCC---CcccccccccchHHH---HHHhCCC-cccEEEEECCCCCEEEEEc
Confidence                        111    11110    0111   2344333  111111   1233442 3567899999999999999


Q ss_pred             CCCchHHHHhcC
Q 020414          303 GMPDWQQIVQEL  314 (326)
Q Consensus       303 G~PpW~~lv~eL  314 (326)
                      |..+.+++.+.|
T Consensus       128 g~~~~~~l~~~l  139 (154)
T 3ia1_A          128 GRAGREALLDAL  139 (154)
T ss_dssp             SBCCHHHHHHHH
T ss_pred             CCCCHHHHHHHH
Confidence            998888776654

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=87.72  E-value=5.4  Score=30.69  Aligned_cols=60  Identities=3%  Similarity=-0.055  Sum_probs=38.7

Q ss_pred             CCeeeeCCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHH---HHHHHHhhcCcEEEEEEeC
Q 020414          151 RLPLRLSTNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAE---RFRTDLLRRGVLLVPVIWG  210 (326)
Q Consensus       151 rL~V~l~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae---~~r~~L~~rgVLVVPVv~~  210 (326)
                      .+.+.-.+|+.+++.+++|..-+|...++ =..+...+..-+   .+.+.+.+.++.||-|..+
T Consensus         9 ~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d   72 (142)
T 3ewl_A            9 DFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPD   72 (142)
T ss_dssp             CCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECS
T ss_pred             CCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEec
Confidence            34444457899999999985444333332 234544433333   3777888889999999875

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=87.58  E-value=9.6  Score=32.10  Aligned_cols=62  Identities=8%  Similarity=-0.008  Sum_probs=42.0

Q ss_pred             cCCeeeeCCCceeehhhhcCcceeEEEecCH-H-HHHHHHHHHHHHHHHHhhc---CcEEEEEEeCC
Q 020414          150 SRLPLRLSTNRIVELVQLRGTVRPVILAGRK-E-TVSLAIQKAERFRTDLLRR---GVLLVPVIWGE  211 (326)
Q Consensus       150 ~rL~V~l~~~r~v~L~qLRg~aRvVIvAG~~-e-~V~~Al~~Ae~~r~~L~~r---gVLVVPVv~~~  211 (326)
                      ....+.-.+|+.+++.+++|..-+|..-++- . .+...+...+.+.+.+.+.   +|-||-|..+.
T Consensus        22 p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~   88 (200)
T 2b7k_A           22 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDP   88 (200)
T ss_dssp             CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCT
T ss_pred             CCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCC
Confidence            3444554588999999999865544443332 3 3666677777777777754   89888888753

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=85.67  E-value=11  Score=29.22  Aligned_cols=63  Identities=6%  Similarity=0.009  Sum_probs=45.1

Q ss_pred             hccCCeeeeCCCceeehhhhcCcceeEEEec-CHHHHHHHHHHHHH---HHHHHhhcCcEEEEEEeC
Q 020414          148 TLSRLPLRLSTNRIVELVQLRGTVRPVILAG-RKETVSLAIQKAER---FRTDLLRRGVLLVPVIWG  210 (326)
Q Consensus       148 ~L~rL~V~l~~~r~v~L~qLRg~aRvVIvAG-~~e~V~~Al~~Ae~---~r~~L~~rgVLVVPVv~~  210 (326)
                      .+-.+.+.-.+|+.++|.+++|..-++...+ .=.++...+...+.   +.+.+.+.++.||-|..+
T Consensus        10 ~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d   76 (142)
T 3eur_A           10 KALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPD   76 (142)
T ss_dssp             BCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECS
T ss_pred             ccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcC
Confidence            3445555556889999999999544443333 23567777777777   888888899999998874

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=83.92  E-value=12  Score=28.39  Aligned_cols=122  Identities=10%  Similarity=0.077  Sum_probs=69.6

Q ss_pred             CCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCcccccccCCCcccccccCCCCc
Q 020414          158 TNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGLAPKAAAALPSIG  236 (326)
Q Consensus       158 ~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~~~kgfG~~~~aa~a~ps~~  236 (326)
                      +++.+++.++++..-+|...++ =.++...+...+.+.+.+.+. +.++.|..+......               .+   
T Consensus        18 ~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~~~~~~~~~---------------~~---   78 (148)
T 2b5x_A           18 NGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ-LNVVAVHMPRSEDDL---------------DP---   78 (148)
T ss_dssp             SCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEECCCSTTTS---------------SH---
T ss_pred             cCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEEcCCCcccc---------------CH---
Confidence            6789999999886655554443 355666666667777777776 888888875421110               00   


Q ss_pred             hhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCCCCCchHHHHhcC
Q 020414          237 EDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQIVQEL  314 (326)
Q Consensus       237 ~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~G~PpW~~lv~eL  314 (326)
                      ++.    +.....    ..-.|   |+..+.-..    -.+.-|+ ..-+.++.+..||+|..+..|.++..++.+.|
T Consensus        79 ~~~----~~~~~~----~~~~~---~~~~d~~~~----~~~~~~v-~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  140 (148)
T 2b5x_A           79 GKI----KETAAE----HDITQ---PIFVDSDHA----LTDAFEN-EYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRV  140 (148)
T ss_dssp             HHH----HHHHHH----TTCCS---CEEECSSCH----HHHHTCC-CCSSEEEEECTTCBEEEEEESCSTTHHHHHHH
T ss_pred             HHH----HHHHHH----cCCCc---ceEECCchh----HHHHhCC-CCCCEEEEECCCCcEEEEecCCCCHHHHHHHH
Confidence            111    111111    11122   222111001    1122355 23567889999999999999988877766543

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=83.63  E-value=17  Score=29.68  Aligned_cols=63  Identities=14%  Similarity=0.248  Sum_probs=44.7

Q ss_pred             ccCCeee-eCCCceeehhhhcCcc-eeEEEec-CHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCC
Q 020414          149 LSRLPLR-LSTNRIVELVQLRGTV-RPVILAG-RKETVSLAIQKAERFRTDLLRRGVLLVPVIWGE  211 (326)
Q Consensus       149 L~rL~V~-l~~~r~v~L~qLRg~a-RvVIvAG-~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~  211 (326)
                      +-.+.+. -.+|+.+++.+++|.. -+|.... .=.++...+...+.+.+++.+.+|.||.|..+.
T Consensus        24 ~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~   89 (196)
T 2ywi_A           24 APPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSND   89 (196)
T ss_dssp             CCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSC
T ss_pred             CCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCc
Confidence            3345555 4478999999999975 3333332 234666777777788888988999999998854

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=83.13  E-value=9.5  Score=28.91  Aligned_cols=131  Identities=11%  Similarity=0.088  Sum_probs=76.1

Q ss_pred             hhhccCCeeeeCCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCcccccccCCC
Q 020414          146 DETLSRLPLRLSTNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGL  224 (326)
Q Consensus       146 Ee~L~rL~V~l~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~~~kgfG~  224 (326)
                      .+.+-.+.+.-.+++.+++.+ ++..-+|...++ =.++...+...+.+.+.+.+.++-+|.|..+......        
T Consensus        12 g~~~p~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~--------   82 (145)
T 3erw_A           12 PAVPAVFLMKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQ--------   82 (145)
T ss_dssp             CCSCCEEEEECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCH--------
T ss_pred             CCcCCCceeecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCH--------
Confidence            344444455555789999999 776555544433 3567777777788888888789999999885321110        


Q ss_pred             cccccccCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCCCC
Q 020414          225 APKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGM  304 (326)
Q Consensus       225 ~~~aa~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~G~  304 (326)
                                  +.+.    .....    ..-.|   |+..+.-.. +   .+.-|+. .-+.++.+..||+|+.+-.|.
T Consensus        83 ------------~~~~----~~~~~----~~~~~---~~~~d~~~~-~---~~~~~v~-~~P~~~lid~~G~i~~~~~g~  134 (145)
T 3erw_A           83 ------------QVVE----DFIKA----NKLTF---PIVLDSKGE-L---MKEYHII-TIPTSFLLNEKGEIEKTKIGP  134 (145)
T ss_dssp             ------------HHHH----HHHHH----TTCCS---CEEECSSSH-H---HHHTTCC-EESEEEEECTTCCEEEEEESC
T ss_pred             ------------HHHH----HHHHH----cCCce---eEEEcCchh-H---HHhcCcC-ccCeEEEEcCCCcEEEEEcCC
Confidence                        1111    11111    01112   221111111 1   1233442 246789999999999999999


Q ss_pred             CchHHHHhc
Q 020414          305 PDWQQIVQE  313 (326)
Q Consensus       305 PpW~~lv~e  313 (326)
                      .+.+++.+-
T Consensus       135 ~~~~~l~~~  143 (145)
T 3erw_A          135 MTAEQLKEW  143 (145)
T ss_dssp             CCHHHHHHH
T ss_pred             cCHHHHHHh
Confidence            888777654

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=82.54  E-value=14  Score=29.41  Aligned_cols=134  Identities=11%  Similarity=0.142  Sum_probs=72.8

Q ss_pred             HHhhhhhhccCCeeeeC--CCceeehhhh-cCcceeEEEecCHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCccc
Q 020414          141 AQISRDETLSRLPLRLS--TNRIVELVQL-RGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQV  217 (326)
Q Consensus       141 ari~REe~L~rL~V~l~--~~r~v~L~qL-Rg~aRvVIvAG~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~  217 (326)
                      ..+.-++.+-...+.-.  +++.+++.++ +|..-+|...++  .+-. ++...+.-++|.+.++-|+.|..++.. .. 
T Consensus        20 ~~~~~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~--~C~~-C~~~~~~l~~l~~~~v~vv~v~~~~~~-~~-   94 (168)
T 2b1k_A           20 ESALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWAT--WCPT-CRAEHQYLNQLSAQGIRVVGMNYKDDR-QK-   94 (168)
T ss_dssp             CCTTTTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECT--TCHH-HHHHHHHHHHHHHTTCCEEEEEESCCH-HH-
T ss_pred             cccccCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECC--CCHH-HHHHHHHHHHHHHCCCEEEEEECCCCh-HH-
Confidence            33444555666666655  7889999986 666544444433  3332 333344445566669999998874310 00 


Q ss_pred             ccccCCCcccccccCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCcee
Q 020414          218 EKKGFGLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRV  297 (326)
Q Consensus       218 ~~kgfG~~~~aa~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRV  297 (326)
                                   .     .+|-   +..        ...|...-.+.+.  . +.   +.-|+. +-+.++.+..||+|
T Consensus        95 -------------~-----~~~~---~~~--------~~~~~~~~~d~~~--~-~~---~~~~v~-~~P~~~lid~~G~i  138 (168)
T 2b1k_A           95 -------------A-----ISWL---KEL--------GNPYALSLFDGDG--M-LG---LDLGVY-GAPETFLIDGNGII  138 (168)
T ss_dssp             -------------H-----HHHH---HHH--------CCCCSEEEEETTC--H-HH---HHHTCC-SSSEEEEECTTSBE
T ss_pred             -------------H-----HHHH---HHc--------CCCCceeeECcch--H-HH---HHcCcc-ccCEEEEECCCCeE
Confidence                         0     1111   110        1122111111110  0 11   122442 24668889999999


Q ss_pred             eecCCCCCchHHHHhcCC
Q 020414          298 RRSGKGMPDWQQIVQELP  315 (326)
Q Consensus       298 r~SG~G~PpW~~lv~eLP  315 (326)
                      +.+-.|..+...+.+.+-
T Consensus       139 ~~~~~g~~~~~~l~~~l~  156 (168)
T 2b1k_A          139 RYRHAGDLNPRVWEEEIK  156 (168)
T ss_dssp             EEEEESCCCHHHHHHTTH
T ss_pred             EEEEeCCCCHHHHHHHHH
Confidence            999999988888877653

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=81.45  E-value=20  Score=29.21  Aligned_cols=135  Identities=10%  Similarity=0.085  Sum_probs=78.4

Q ss_pred             CCeeeeCCCceeehhhhcCcceeEEEecCHH--HHHHHHHHHHHHHHHHhh--cCcEEEEEEeCCCCCcccccccCCCcc
Q 020414          151 RLPLRLSTNRIVELVQLRGTVRPVILAGRKE--TVSLAIQKAERFRTDLLR--RGVLLVPVIWGEGRAPQVEKKGFGLAP  226 (326)
Q Consensus       151 rL~V~l~~~r~v~L~qLRg~aRvVIvAG~~e--~V~~Al~~Ae~~r~~L~~--rgVLVVPVv~~~~~~~~~~~kgfG~~~  226 (326)
                      ...+.-.+|+.+++++|+|..-+|..-.+.=  .+...+..-+.+.+++.+  .++-||-|..+..+.++          
T Consensus        10 ~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~----------   79 (170)
T 3me7_A           10 DITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLE----------   79 (170)
T ss_dssp             TCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHH----------
T ss_pred             CeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHH----------
Confidence            4444445889999999998765555555543  467777777888888865  56888888875311110          


Q ss_pred             cccccCCCCchhHHHHhHHHhhhhccccccceEE-EeeChhhHHHHHHHHHhhcCCC--------CCCcEEEEEeeCcee
Q 020414          227 KAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKA-EVVSPSEWERWIRDQQKSEGVT--------PGEDVYIILRLDGRV  297 (326)
Q Consensus       227 ~aa~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A-~Pv~~~eW~~wi~eQ~~~aGv~--------~~~gVyi~LrlDGRV  297 (326)
                                     ..+..+. ........|.. .+-+.++-.+..+    .-|+.        ...+.++.|..||+|
T Consensus        80 ---------------~~~~~~~-~~~~~~~~w~~l~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~lID~~G~i  139 (170)
T 3me7_A           80 ---------------DIKRFQK-EYGIDGKGWKVVKAKTSEDLFKLLD----AIDFRFMTAGNDFIHPNVVVVLSPELQI  139 (170)
T ss_dssp             ---------------HHHHHHH-HTTCCSSSEEEEEESSHHHHHHHHH----HTTCCCEEETTEEECCCEEEEECTTSBE
T ss_pred             ---------------HHHHHHH-HcCCCCCCeEEEeCCCHHHHHHHHH----HCCeEEecCCCccccCceEEEECCCCeE
Confidence                           1111111 11112234643 3334444333332    22331        123468899999999


Q ss_pred             eecCCCC-CchHHHHhcCC
Q 020414          298 RRSGKGM-PDWQQIVQELP  315 (326)
Q Consensus       298 r~SG~G~-PpW~~lv~eLP  315 (326)
                      +..=.|. |+.+++.+.|.
T Consensus       140 ~~~~~g~~~~~~~i~~~l~  158 (170)
T 3me7_A          140 KDYIYGVNYNYLEFVNALR  158 (170)
T ss_dssp             EEEEESSSCCHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            9865664 66777776653

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=81.09  E-value=21  Score=29.14  Aligned_cols=131  Identities=15%  Similarity=0.143  Sum_probs=70.0

Q ss_pred             hhhhhccCCeeeeCCC--ceeehhhhcCcceeEEEecCHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCccccccc
Q 020414          144 SRDETLSRLPLRLSTN--RIVELVQLRGTVRPVILAGRKETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKG  221 (326)
Q Consensus       144 ~REe~L~rL~V~l~~~--r~v~L~qLRg~aRvVIvAG~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~~~kg  221 (326)
                      .-+..+-.+.+.--++  +.+++.+++|..-+|...++  .+.. ++...+.-++|.+.||-||-|..++.  +      
T Consensus        31 ~~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~--~C~~-C~~~~~~l~~l~~~~v~vv~vs~~d~--~------   99 (176)
T 3kh7_A           31 LIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGT--WCPS-CRVEHPELTRLAEQGVVIYGINYKDD--N------   99 (176)
T ss_dssp             TTTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECT--TCHH-HHHHHHHHHHHHHTTCEEEEEEESCC--H------
T ss_pred             ccCCcCCCcEecccCCCCceecHHHhCCCEEEEEEECC--cCHH-HHHHHHHHHHHHHCCCEEEEEeCCCC--H------
Confidence            3344444555555455  88999999987655544433  3322 22233333445555999999987421  0      


Q ss_pred             CCCcccccccCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecC
Q 020414          222 FGLAPKAAAALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSG  301 (326)
Q Consensus       222 fG~~~~aa~a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG  301 (326)
                                     ++..+-.+..        .-.|...-.+.+   .-+.   +.-|+. .-+.++.+..||+|+.+-
T Consensus       100 ---------------~~~~~~~~~~--------~~~~~~~~~d~~---~~~~---~~~~v~-~~P~~~lid~~G~i~~~~  149 (176)
T 3kh7_A          100 ---------------AAAIKWLNEL--------HNPYLLSISDAD---GTLG---LDLGVY-GAPETYLIDKQGIIRHKI  149 (176)
T ss_dssp             ---------------HHHHHHHHHT--------TCCCSEEEEETT---CHHH---HHHTCC-SSCEEEEECTTCBEEEEE
T ss_pred             ---------------HHHHHHHHHc--------CCCCceEEECCc---chHH---HHcCCC-CCCeEEEECCCCeEEEEE
Confidence                           1111000110        111211111111   1111   122442 246788999999999999


Q ss_pred             CCCCchHHHHhcCC
Q 020414          302 KGMPDWQQIVQELP  315 (326)
Q Consensus       302 ~G~PpW~~lv~eLP  315 (326)
                      .|..+.+.+.+.|-
T Consensus       150 ~g~~~~~~l~~~l~  163 (176)
T 3kh7_A          150 VGVVDQKVWREQLA  163 (176)
T ss_dssp             ESCCCHHHHHHHTH
T ss_pred             cCCCCHHHHHHHHH
Confidence            99988888777654

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=80.37  E-value=2.1  Score=36.75  Aligned_cols=57  Identities=11%  Similarity=0.152  Sum_probs=37.3

Q ss_pred             CeeeeCCCceeehhhhcCcceeEEEe-c-CHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414          152 LPLRLSTNRIVELVQLRGTVRPVILA-G-RKETVSLAIQKAERFRTDLLRRGVLLVPVIWG  210 (326)
Q Consensus       152 L~V~l~~~r~v~L~qLRg~aRvVIvA-G-~~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~  210 (326)
                      +.+.-.+|+.++|++++|..-++..- + .-..+...+...+.+.+++  .|+-||-|..+
T Consensus        61 f~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~v~vv~Is~D  119 (200)
T 3zrd_A           61 FTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--ENTVVLCISSD  119 (200)
T ss_dssp             CEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TTEEEEEEESS
T ss_pred             eEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CCCEEEEEECC
Confidence            33333368999999999964333332 3 2445666666666666677  78988888764

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=80.29  E-value=15  Score=27.07  Aligned_cols=128  Identities=12%  Similarity=0.168  Sum_probs=67.7

Q ss_pred             CeeeeCCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCcccccccCCCcccccc
Q 020414          152 LPLRLSTNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGLAPKAAA  230 (326)
Q Consensus       152 L~V~l~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~~~kgfG~~~~aa~  230 (326)
                      +.+.-.+|+.+++.+++|..-+|...++ =.++...+...+.+.+. ...++.+|.+.....+...              
T Consensus         5 f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~-~~~~~~~v~i~~~~~~~~~--------------   69 (138)
T 4evm_A            5 FELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKE-AGDDYVVLTVVSPGHKGEQ--------------   69 (138)
T ss_dssp             CEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHT-CTTTEEEEEEECTTSTTCC--------------
T ss_pred             ceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHH-hCCCcEEEEEEcCCCCchh--------------
Confidence            3344447899999999986644444433 23455555555565555 4558888888653211110              


Q ss_pred             cCCCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCCCCCchHHH
Q 020414          231 ALPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQI  310 (326)
Q Consensus       231 a~ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~G~PpW~~l  310 (326)
                        .  .+++    +....      +..+.-.|+..+.-.. +   .+.-|+ ..-+.++.+..||+|+.+-.|..+=+++
T Consensus        70 --~--~~~~----~~~~~------~~~~~~~~~~~d~~~~-~---~~~~~v-~~~P~~~lid~~G~i~~~~~g~~~~~~l  130 (138)
T 4evm_A           70 --S--EADF----KNWYK------GLDYKNLPVLVDPSGK-L---LETYGV-RSYPTQAFIDKEGKLVKTHPGFMEKDAI  130 (138)
T ss_dssp             --C--HHHH----HHHHT------TCCCTTCCEEECTTCH-H---HHHTTC-CSSSEEEEECTTCCEEEEEESCCCHHHH
T ss_pred             --h--HHHH----HHHHh------hcCCCCeeEEECcchH-H---HHHcCc-ccCCeEEEECCCCcEEEeecCCCcHHHH
Confidence              0  0111    11110      1111111222111111 1   123344 2346789999999999999998776665


Q ss_pred             Hhc
Q 020414          311 VQE  313 (326)
Q Consensus       311 v~e  313 (326)
                      .+.
T Consensus       131 ~~~  133 (138)
T 4evm_A          131 LQT  133 (138)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	326
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	92.57
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	89.24
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	87.4
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	87.06
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	86.73
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	85.31
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	80.62

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.57  E-value=0.93  Score=35.88  Aligned_cols=133  Identities=16%  Similarity=0.169  Sum_probs=73.6

Q ss_pred             CCceeehhhhcCcceeEEEecC--HHHHHHHHHHHHHHHHHHhh--cCcEEEEEEeCCCC-CcccccccCCCcccccccC
Q 020414          158 TNRIVELVQLRGTVRPVILAGR--KETVSLAIQKAERFRTDLLR--RGVLLVPVIWGEGR-APQVEKKGFGLAPKAAAAL  232 (326)
Q Consensus       158 ~~r~v~L~qLRg~aRvVIvAG~--~e~V~~Al~~Ae~~r~~L~~--rgVLVVPVv~~~~~-~~~~~~kgfG~~~~aa~a~  232 (326)
                      +|+.+++++|||..-+|..-.+  ...+...+.....+.+.|.+  .+|.+|-|.++... .++                
T Consensus        20 ~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~----------------   83 (172)
T d1xzoa1          20 DGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPK----------------   83 (172)
T ss_dssp             TSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHH----------------
T ss_pred             CCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccchHH----------------
Confidence            7899999999997654444222  13344445555555666655  35888888775321 111                


Q ss_pred             CCCchhHHHHhHHHhhhhccccccceEEE-eeChhhHHHHHHHHHh-hcCCCCCC------cEEEEEeeCceeee--cCC
Q 020414          233 PSIGEDFEKRAQSITAKSKLKSEIRFKAE-VVSPSEWERWIRDQQK-SEGVTPGE------DVYIILRLDGRVRR--SGK  302 (326)
Q Consensus       233 ps~~~~~e~~~~~~~a~~~~~~~~rw~A~-Pv~~~eW~~wi~eQ~~-~aGv~~~~------gVyi~LrlDGRVr~--SG~  302 (326)
                               ..+..+ .........|... -.+.+...++...... ..+.+.++      ..++.+..||+|++  .|.
T Consensus        84 ---------~l~~y~-~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~  153 (172)
T d1xzoa1          84 ---------QLKKFA-ANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGV  153 (172)
T ss_dssp             ---------HHHHHH-TTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESS
T ss_pred             ---------HHHHHH-HHhccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcCC
Confidence                     111111 1112233457543 2234455555444321 11222211      24678999999995  577


Q ss_pred             CCCchHHHHhcCCC
Q 020414          303 GMPDWQQIVQELPP  316 (326)
Q Consensus       303 G~PpW~~lv~eLP~  316 (326)
                      ..+|+++++++|-.
T Consensus       154 ~~~~~~~l~~dik~  167 (172)
T d1xzoa1         154 ENTPYDDIISDVKS  167 (172)
T ss_dssp             SSCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
Confidence            77899999988643

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=89.24  E-value=2  Score=33.77  Aligned_cols=53  Identities=13%  Similarity=0.101  Sum_probs=40.1

Q ss_pred             CCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414          158 TNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWG  210 (326)
Q Consensus       158 ~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~  210 (326)
                      +|+.++|++|+|..=++..-.+ =..+...+...+.+.+.....++-||.|..+
T Consensus        45 ~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d   98 (176)
T d1jfua_          45 DGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINID   98 (176)
T ss_dssp             TSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECC
T ss_pred             CcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhcccccccccccccccccc
Confidence            7899999999997655555333 3456666777777888888999999988764

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.40  E-value=1.5  Score=33.67  Aligned_cols=54  Identities=9%  Similarity=0.127  Sum_probs=41.4

Q ss_pred             CCCceeehhhhcCcceeEEEe--cC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414          157 STNRIVELVQLRGTVRPVILA--GR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWG  210 (326)
Q Consensus       157 ~~~r~v~L~qLRg~aRvVIvA--G~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~  210 (326)
                      .+|+.++|++++|...+|++-  ++ --.+..-+.......+++.+.|+.|+=+..+
T Consensus        16 ~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d   72 (153)
T d1xvwa1          16 QNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVG   72 (153)
T ss_dssp             TTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESC
T ss_pred             CCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccch
Confidence            478999999999998877764  32 2256777777777778899999988887663

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=87.06  E-value=4.6  Score=30.05  Aligned_cols=58  Identities=21%  Similarity=0.186  Sum_probs=46.0

Q ss_pred             eeeeCCCceeehhhhcCcceeEEEecCH-HHHHHHHHHHHHHHHHHhhcCcEEEEEEeC
Q 020414          153 PLRLSTNRIVELVQLRGTVRPVILAGRK-ETVSLAIQKAERFRTDLLRRGVLLVPVIWG  210 (326)
Q Consensus       153 ~V~l~~~r~v~L~qLRg~aRvVIvAG~~-e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~  210 (326)
                      .+.-.+|..+++.+++|..-+|....+- .++...+...+.+.+.+.+.++.||.+..+
T Consensus         9 ~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~   67 (137)
T d1st9a_           9 VLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVG   67 (137)
T ss_dssp             EEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEES
T ss_pred             EEECCCcCEEeHHHhCCCEEEEEEeeccccceeeccccccccccccccccccccccccc
Confidence            3444478999999999987555554443 578888889999999999999999998874

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=86.73  E-value=0.35  Score=36.79  Aligned_cols=128  Identities=15%  Similarity=0.119  Sum_probs=79.4

Q ss_pred             eeeCCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCcccccccCCCcccccccC
Q 020414          154 LRLSTNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRRGVLLVPVIWGEGRAPQVEKKGFGLAPKAAAAL  232 (326)
Q Consensus       154 V~l~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~rgVLVVPVv~~~~~~~~~~~kgfG~~~~aa~a~  232 (326)
                      +.-.+++.++|.+++|..-++..-++ =.++.+.+...+.+.+++...++.++.|.........                
T Consensus         8 l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~----------------   71 (143)
T d2fy6a1           8 LKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEK----------------   71 (143)
T ss_dssp             CEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCC----------------
T ss_pred             eECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeeccccc----------------
Confidence            33457899999999997655555443 3477777778888888999999999999875322111                


Q ss_pred             CCCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeCceeeecCCCCCchHHHHh
Q 020414          233 PSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWQQIVQ  312 (326)
Q Consensus       233 ps~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlDGRVr~SG~G~PpW~~lv~  312 (326)
                      +  ..++.   +..       .+..+.-.|+..|...+ +.   +.-|+ .+-+-|+.|.+||+|+.+=.|..+-.++.+
T Consensus        72 ~--~~~~~---~~~-------~~~~~~~~~~~~D~~~~-~~---~~~~v-~~~P~~~liD~~G~i~~~~~G~~~~~~~~~  134 (143)
T d2fy6a1          72 K--DGDFQ---KWY-------AGLNYPKLPVVTDNGGT-IA---QSLNI-SVYPSWALIGKDGDVQRIVKGSINEAQALA  134 (143)
T ss_dssp             C--TTHHH---HHH-------TTSCCTTSCEEECTTCH-HH---HHTTC-CSSSEEEEECTTSCEEEEEESCCCHHHHHH
T ss_pred             c--hhhhh---hhh-------hhcCCcccccccccchH-HH---HHcCC-CccCEEEEECCCCEEEEEEECCCCHHHHHH
Confidence            0  01111   111       12223334554444322 22   22344 234679999999999998888888777665


Q ss_pred             cC
Q 020414          313 EL  314 (326)
Q Consensus       313 eL  314 (326)
                      -|
T Consensus       135 ~l  136 (143)
T d2fy6a1         135 LI  136 (143)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=85.31  E-value=3.7  Score=31.19  Aligned_cols=110  Identities=16%  Similarity=0.160  Sum_probs=69.0

Q ss_pred             eCCCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHh-hcCcEEEEEEeCCCCCcccccccCCCcccccccCC
Q 020414          156 LSTNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLL-RRGVLLVPVIWGEGRAPQVEKKGFGLAPKAAAALP  233 (326)
Q Consensus       156 l~~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~-~rgVLVVPVv~~~~~~~~~~~kgfG~~~~aa~a~p  233 (326)
                      ..++..++|++|||..-++-.-++ =..+.+.+...+.+.+++. +.++.||.|..+...                    
T Consensus        15 ~~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~--------------------   74 (144)
T d1o73a_          15 LSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENE--------------------   74 (144)
T ss_dssp             BCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSH--------------------
T ss_pred             ccCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhH--------------------
Confidence            345677999999998666665444 4567777767777777774 568999999874310                    


Q ss_pred             CCchhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeC-ceeeecCC
Q 020414          234 SIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLD-GRVRRSGK  302 (326)
Q Consensus       234 s~~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlD-GRVr~SG~  302 (326)
                         +++.    ...      .+..|.-.|.+.+.|..=+..+.   |+. +=+-++.|.+| |+|..+..
T Consensus        75 ---~~~~----~~~------~~~~~~~~~~~~~~~~~~l~~~y---~v~-~~Pt~~lID~~~G~Ii~~~~  127 (144)
T d1o73a_          75 ---SDFH----DYY------GKMPWLALPFDQRSTVSELGKTF---GVE-SIPTLITINADTGAIIGTQA  127 (144)
T ss_dssp             ---HHHH----HHH------TTCSSEECCTTCHHHHHHHHHHH---TCC-SSSEEEEEETTTCCEEESCH
T ss_pred             ---HHHH----HHH------HhccccceeeeccchHHHHHHHc---CCC-cCCEEEEEECCCCEEEeecc
Confidence               1111    111      13456666777766665444443   441 23569999998 99987643

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=80.62  E-value=4.6  Score=31.00  Aligned_cols=105  Identities=13%  Similarity=0.162  Sum_probs=65.1

Q ss_pred             CCceeehhhhcCcceeEEEecC-HHHHHHHHHHHHHHHHHHhhc-CcEEEEEEeCCCCCcccccccCCCcccccccCCCC
Q 020414          158 TNRIVELVQLRGTVRPVILAGR-KETVSLAIQKAERFRTDLLRR-GVLLVPVIWGEGRAPQVEKKGFGLAPKAAAALPSI  235 (326)
Q Consensus       158 ~~r~v~L~qLRg~aRvVIvAG~-~e~V~~Al~~Ae~~r~~L~~r-gVLVVPVv~~~~~~~~~~~kgfG~~~~aa~a~ps~  235 (326)
                      ++..++|++|+|..-++-.-++ =..+.+.+-..+.+.+++.+. ++.||-|.+++. .                     
T Consensus        17 ~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~-~---------------------   74 (144)
T d1i5ga_          17 AAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDES-A---------------------   74 (144)
T ss_dssp             TEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSS-H---------------------
T ss_pred             CCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEecccc-H---------------------
Confidence            5678999999997655544333 566777777777788888765 677888877431 0                     


Q ss_pred             chhHHHHhHHHhhhhccccccceEEEeeChhhHHHHHHHHHhhcCCCCCCcEEEEEeeC-ceeee
Q 020414          236 GEDFEKRAQSITAKSKLKSEIRFKAEVVSPSEWERWIRDQQKSEGVTPGEDVYIILRLD-GRVRR  299 (326)
Q Consensus       236 ~~~~e~~~~~~~a~~~~~~~~rw~A~Pv~~~eW~~wi~eQ~~~aGv~~~~gVyi~LrlD-GRVr~  299 (326)
                       +++.    +..      .+..|-..|+........+.++.   |+. +=+-++.|.+| |+|..
T Consensus        75 -~~~~----~~~------~~~~~~~~~~~d~~~~~~l~~~y---~v~-~iPt~~lid~~~G~vi~  124 (144)
T d1i5ga_          75 -EDFK----DYY------AKMPWLALPFEDRKGMEFLTTGF---DVK-SIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             -HHHH----HHH------TTCSSEECCTTCHHHHHHHHHHT---TCC-SSSEEEEEETTTCCEEE
T ss_pred             -HHHH----HHH------HhCCCCceeeEChHHHHHHHHHC---CCC-CcCEEEEEeCCCCEEEe
Confidence             1121    111      23457777776555444444433   442 23568889987 88863