Citrus Sinensis ID: 020448

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
Protein Sequence
MRALSSFRNRLPFKLYPSASIESNNKIRNIMSASDESPCFSRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQSQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccEEEEEcccccccccccccEEEccccccccccccccccccccEEEEEEEccEEcccccccccccccccEEEEEccccccccccccccccccEEEEEEEcccccccccccccccccccccEEEcccEEEEEEEEEEcccccccccccccEEEEEEEccccEEEEEcccccEEEEEEEEccEEEEccccEEEcccEEEEEEccccEEEEEccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccccEEEEEEccccccccccccccccccccccccHHEEEEEcccccccccEEEEEEccccHHcccccHHEHHccccccccccccccccccHHHHHHHcccEEEcccccccEEEccccEEEEEccccEEEcccccccccccEEEEEEEcccHcccccccHccccHHccccEcccccEEEEEEEccccccccEEcccccEEEEEEEccccEEEEEcccccEEEEEEEEcEEEEcccccccccccEEEEEcccccEEEEcccccccEEEEEEcccccccEEEccccEcccHHHHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
mralssfrnrlpfklypsasiesnNKIRnimsasdespcfsrprmvakkvhgklshdgdgaVVRRAigrgdlrsldpflmldefsvsppagfpdhphrgfETVTYMLQGgithqdfsghkgtihtgdvqwmtagrgivhsempagegvqNGLQLWINLsssdkmiepryqeipseeikraetdgVEVRIIAgesmgvrspvytrtptmfldftlkpraqihqsipetWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIagqplnepvvqygpfvmnsqaEIDQTIEDYQLCKNGFENAKYWRSQSQ
Flexible Loop (DISEMBL)
mralssfrnrlpfklypsasiesnnKIRNIMSasdespcfsrPRMVAKKvhgklshdgdgavVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRyqeipseeikraetdgVEVRIiagesmgvrspvytrTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQSQ
Low Complexity Region (SEG)
MRALSSFRNRLPFKLYPSASIESNNKIRNIMSASDESPCFSRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQSQ
Disordered region (IsUnstruct)
***********************************************************GAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINL*************************GVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYW*****
Disordered Region (DISOPRED)
*****SFRNRLPFKLYPSASIESNNK*********************KKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYW*****
Disordered Region (DISEMBL)
MRALSSFRNRLPFKLYPSASIESNNKIRNIMSASDESPCFSRPRMVA*********DGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQSQ
Disordered Region (DISPRO)
***LSSFRNRLPFKLYPSASIESNN***************SRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKN*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRALSSFRNRLPFKLYPSASIESNNKIRNIMSASDESPCFSRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	326	2.2.26 [Sep-21-2011]
Q9SEE4	291	Pirin-like protein OS=Sol	N/A	no	0.883	0.989	0.715	1e-124
Q9ZW82	321	Pirin-like protein At2g43	yes	no	0.904	0.919	0.711	1e-122
Q9LX49	287	Pirin-1 OS=Arabidopsis th	no	no	0.852	0.968	0.676	1e-109
Q9LPS9	310	Pirin-like protein At1g50	no	no	0.889	0.935	0.591	9e-99
Q9LX45	271	Putative pirin-like prote	no	no	0.782	0.940	0.670	2e-97
O00625	290	Pirin OS=Homo sapiens GN=	yes	no	0.861	0.968	0.533	7e-88
Q9D711	290	Pirin OS=Mus musculus GN=	yes	no	0.822	0.924	0.540	3e-85
Q5M827	291	Pirin OS=Rattus norvegicu	yes	no	0.861	0.965	0.522	2e-84
Q9HZ00	285	Putative quercetin 2,3-di	yes	no	0.822	0.940	0.398	4e-48
P58112	276	Pirin-like protein CC_048	yes	no	0.800	0.945	0.383	8e-43

>sp|Q9SEE4|PIRL_SOLLC Pirin-like protein OS=Solanum lycopersicum PE=2 SV=1

 Score =  444 bits (1141), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 206/288 (71%), Positives = 242/288 (84%)

Query: 37  SPCFSRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHP 96
           S  FSRPR+V KKV  +  ++GDGA+VRR+IGR +L++LDPFLMLDEFSVS PAGFPDHP
Sbjct: 4   SSIFSRPRLVVKKVLARAQNEGDGAIVRRSIGRPELQNLDPFLMLDEFSVSQPAGFPDHP 63

Query: 97  HRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWI 156
           HRGFETVTYMLQG  THQDF+GHKGTI TGDVQWMTAGRGIVHSEMPAG G Q GLQLWI
Sbjct: 64  HRGFETVTYMLQGAFTHQDFAGHKGTIRTGDVQWMTAGRGIVHSEMPAGPGTQKGLQLWI 123

Query: 157 NLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKP 216
           NLSS DKMIEPRYQE+  ++I +AE DGV V I+AGESMG +S V+TRTPTM+LDFTLKP
Sbjct: 124 NLSSKDKMIEPRYQELLHQDIPKAEKDGVSVTILAGESMGKKSQVFTRTPTMYLDFTLKP 183

Query: 217 RAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFV 276
            ++ HQ IPETWNAF+Y +EGEG FG+ +S+   AH+ LVL  G+GLS WN+SSK LRFV
Sbjct: 184 GSEHHQPIPETWNAFLYIVEGEGAFGSSDSTTTPAHHCLVLGPGEGLSVWNKSSKPLRFV 243

Query: 277 LIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQ 324
           LI GQP+NEPVVQYGPFVMN+++EI Q  +DYQL KNGFE ++ W S+
Sbjct: 244 LIGGQPINEPVVQYGPFVMNTKSEIMQAYQDYQLGKNGFERSRQWYSK 291

Solanum lycopersicum (taxid: 4081)

>sp|Q9ZW82|PIRL2_ARATH Pirin-like protein At2g43120 OS=Arabidopsis thaliana GN=At2g43120 PE=2 SV=3

 Score =  438 bits (1126), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/305 (71%), Positives = 249/305 (81%), Gaps = 10/305 (3%)

Query: 27  IRNI--MSASDESPCFSRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEF 84
           IRNI  MS+S      SRP  V KKV  KL  +GDGAVVRR I R + + LDPFLMLDEF
Sbjct: 20  IRNIKSMSSSTSQDFVSRP--VIKKVFAKLQKEGDGAVVRRGISRSEQKLLDPFLMLDEF 77

Query: 85  SVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPA 144
           SVSPPAGFPDHPHRGFETVTY+L+GGITHQDF GHKGTI+ GDVQWMTAGRGI+HSEMP 
Sbjct: 78  SVSPPAGFPDHPHRGFETVTYVLEGGITHQDFKGHKGTIYAGDVQWMTAGRGIIHSEMPE 137

Query: 145 GEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTR 204
            E V  GLQLWINLSS++KMIEP YQE+   +I +AE +GVEV++IAGESMG++SPVYTR
Sbjct: 138 -EEVNKGLQLWINLSSNEKMIEPNYQELSHSDIPKAEQNGVEVKVIAGESMGIQSPVYTR 196

Query: 205 TPTMFLDFTLKPRAQIHQSIPETWNAFVYTI---EGEGVFGTVNSSAVSAHNVLVLSLG- 260
           TPTMFLDFTL+P AQIHQ++PE+WNAF Y +   EG GVF + NSS + AH+V+V   G 
Sbjct: 197 TPTMFLDFTLQPGAQIHQNVPESWNAFAYILESGEGGGVFSSSNSSPIPAHSVVVFGPGN 256

Query: 261 DGLSAWNR-SSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAK 319
           DG+S WN+ SSKQLRFVLIAG+P+ EPVVQYGPFVMN+QAEID TIEDY   KNGFE AK
Sbjct: 257 DGVSVWNKSSSKQLRFVLIAGEPIGEPVVQYGPFVMNTQAEIDMTIEDYHYGKNGFEMAK 316

Query: 320 YWRSQ 324
           YWRSQ
Sbjct: 317 YWRSQ 321

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX49|PRN1_ARATH Pirin-1 OS=Arabidopsis thaliana GN=PRN1 PE=1 SV=1

 Score =  393 bits (1010), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/281 (67%), Positives = 228/281 (81%), Gaps = 3/281 (1%)

Query: 41  SRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGF 100
           S PR+V KKV  KL  +G+GAVVR  I + D + LDPF++L EFS S  AGFPDHPHRGF
Sbjct: 7   SVPRIVIKKVLAKLEKEGEGAVVRNGITKIDQKLLDPFVLLVEFSFSLSAGFPDHPHRGF 66

Query: 101 ETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSS 160
           E+VTYMLQGGI H+D  GHKGTI  GDVQWMTAGRGI+HSE P  E V NGLQLWINL S
Sbjct: 67  ESVTYMLQGGIIHKDPKGHKGTIQAGDVQWMTAGRGIIHSEFPE-EEVNNGLQLWINLPS 125

Query: 161 SDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQI 220
           ++KM EP+Y+E+ S +I RAE +GVEV++IAG+SMG++SPVYTRTPTMFLDFTLKP +Q 
Sbjct: 126 TEKMTEPKYKELSSLDIPRAEENGVEVKVIAGDSMGIKSPVYTRTPTMFLDFTLKPGSQT 185

Query: 221 HQSIPETWNAFVYTIEG-EGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRS-SKQLRFVLI 278
           HQ++PE+W AF Y IEG EGVFG++NSSA+SAH+V+V   GD +S WN+S S+ LRF+LI
Sbjct: 186 HQTVPESWTAFAYIIEGDEGVFGSLNSSAISAHHVVVFGPGDLVSVWNKSTSRSLRFLLI 245

Query: 279 AGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAK 319
           AG+P+ EPVVQ GPFVMNSQAEID   +DYQ  KNGFE AK
Sbjct: 246 AGEPIGEPVVQCGPFVMNSQAEIDMAFDDYQNAKNGFEMAK 286

Involved in abscisic acid signal transduction. Plays a role in seed germination and early seedling development. Involved in the blue light (BL) signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPS9|PIRL1_ARATH Pirin-like protein At1g50590 OS=Arabidopsis thaliana GN=At1g50590 PE=2 SV=1

 Score =  360 bits (924), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 177/299 (59%), Positives = 222/299 (74%), Gaps = 9/299 (3%)

Query: 36  ESPCFSRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDH 95
           E    +  R+V KK+  +  H+G GAVVRR+IGR + R  DPFL+LDEFSVS PAGFPDH
Sbjct: 5   EKSSATNTRLVVKKLFARQLHEGFGAVVRRSIGRFEFRYFDPFLVLDEFSVSAPAGFPDH 64

Query: 96  PHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPA----GEGVQNG 151
           PHRGFETVTYML+G I H+D  GHKG I  G +QWMTAG+GIVHSEMP+    G     G
Sbjct: 65  PHRGFETVTYMLEGEILHEDCEGHKGVIREGGLQWMTAGKGIVHSEMPSSNSNGITHNKG 124

Query: 152 LQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLD 211
           LQLWINLSS  K++EP YQEI S++I   E DGV VR+IAGE  GV+S + TRTPTM+LD
Sbjct: 125 LQLWINLSSRQKLVEPSYQEIESKDIAETEKDGVRVRVIAGEWNGVKSKICTRTPTMYLD 184

Query: 212 FTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TVNSSAVSAHNVLVLSL-GDGLSAWNR 268
           FTL P ++I Q IP  WNAFVY ++G G FG   +  SA +AH++LVL L GD L AWN 
Sbjct: 185 FTLSPGSRISQPIPLHWNAFVYVLQGHGHFGDSKLQHSAAAAHHLLVLGLGGDMLEAWNG 244

Query: 269 SSKQ--LRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQS 325
           S     LRF+L+AG+P+ EP+VQ+GPFVMN+Q EID+TI+D++  +NGFE A++W+SQ+
Sbjct: 245 SDSGLPLRFILVAGEPIGEPMVQFGPFVMNTQEEIDETIDDFENFRNGFEKARHWKSQA 303

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX45|PIRL4_ARATH Putative pirin-like protein At3g59260 OS=Arabidopsis thaliana GN=At3g59260 PE=3 SV=1

 Score =  355 bits (912), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 173/258 (67%), Positives = 203/258 (78%), Gaps = 3/258 (1%)

Query: 69  RGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDV 128
           + D   LDPF+ L EFSVSPP GF DHPHRGFE+VTYM QGGI HQD +G+KGTIH GDV
Sbjct: 15  KSDHELLDPFVSLVEFSVSPPGGFKDHPHRGFESVTYMFQGGIIHQDCNGNKGTIHEGDV 74

Query: 129 QWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVR 188
           QWMTAGRGI+HSEMP  E V  GLQLWINL SS KMIEP+  EI S EI  A+  GVEV+
Sbjct: 75  QWMTAGRGIIHSEMPE-EQVNKGLQLWINLPSSAKMIEPKNIEISSSEIPSADDYGVEVK 133

Query: 189 IIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEG-EGVFGTVNSS 247
           +IAGESMGV+SP YT+TP MFLDFTL P+AQ HQ++PE+W AF Y +EG EGVF + +SS
Sbjct: 134 VIAGESMGVKSPFYTKTPIMFLDFTLDPKAQTHQAVPESWTAFAYIVEGDEGVFSSSDSS 193

Query: 248 AVSAHNVLVLSLGDGLSAWNRS-SKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIE 306
            V AHNV+V   GD +S WN S S+ LRF+LIAG+P+ EPVVQ+GPFVMNSQ EI+ TI 
Sbjct: 194 TVQAHNVVVFGTGDEVSVWNTSNSRPLRFLLIAGEPIGEPVVQHGPFVMNSQDEIEMTIG 253

Query: 307 DYQLCKNGFENAKYWRSQ 324
           DY+   NGFE AK+WRS+
Sbjct: 254 DYRNGMNGFEMAKHWRSE 271

Arabidopsis thaliana (taxid: 3702)

>sp|O00625|PIR_HUMAN Pirin OS=Homo sapiens GN=PIR PE=1 SV=1

 Score =  324 bits (830), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 151/283 (53%), Positives = 204/283 (72%), Gaps = 2/283 (0%)

Query: 44  RMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETV 103
           + V   V  +   +G GA VRR+IGR +L++LDPFL+ DEF    P GFPDHPHRGFETV
Sbjct: 5   KKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETV 64

Query: 104 TYMLQGG-ITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSD 162
           +Y+L+GG + H+DF GH G ++ GD+QWMTAGRGI+H+EMP  E   +GLQLW+NL SS+
Sbjct: 65  SYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRSSE 124

Query: 163 KMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQ 222
           KM+EP+YQE+ SEEI +   DGV V +I+GE++G++S VYTRTPT++LDF L P A+  Q
Sbjct: 125 KMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQ 184

Query: 223 SIPETWNAFVYTIEGEGVFGTVNS-SAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQ 281
            IP+ W +F+YTI G+   G  ++   +  H+  VL  GD +   N+  K+  FVLIAG+
Sbjct: 185 PIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAGE 244

Query: 282 PLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQ 324
           PL EPV+Q+GPFVMN+  EI Q I D++  KNGFE AK W+S+
Sbjct: 245 PLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSK 287

Possible transcriptional coregulator. May contribute to the regulation of cellular processes via its interaction with BCL3. May be required for efficient terminal myeloid maturation of hematopoietic cells. May play a role in the regulation of cell migration. May promote apoptosis when overexpressed. Has quercetin 2,3-dioxygenase activity (in vitro).

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 4

>sp|Q9D711|PIR_MOUSE Pirin OS=Mus musculus GN=Pir PE=2 SV=1

 Score =  315 bits (807), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 146/270 (54%), Positives = 197/270 (72%), Gaps = 2/270 (0%)

Query: 57  DGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGG-ITHQD 115
           +G GA VRR+IGR +L++LDPFL+ DEF    P GFPDHPHRGFETV+Y+L+GG + H+D
Sbjct: 18  EGVGARVRRSIGRPELKNLDPFLLFDEFKGGKPGGFPDHPHRGFETVSYLLEGGSMAHED 77

Query: 116 FSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRYQEIPSE 175
           F GH G ++ GD+QWMTAGRGI+H+EMP  E   +GLQLW+NL  S+KM+ P+YQE+ SE
Sbjct: 78  FCGHVGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRRSEKMVAPQYQELKSE 137

Query: 176 EIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTI 235
           EI +   DGV V +I+GE++G++S VYTRTPT++LDF L   A+  Q IP+ W +F+YTI
Sbjct: 138 EIPKPTKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDQGAKHSQPIPKGWTSFIYTI 197

Query: 236 EGEGVFGTVNS-SAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQYGPFV 294
            G+   G  ++   +  H+  VL  GD +   N+  K+  FVLIAG+PL EPVVQ+GPFV
Sbjct: 198 SGDVYIGPDDAQQKIEPHHTAVLGEGDAVQLENKDPKRSHFVLIAGEPLREPVVQHGPFV 257

Query: 295 MNSQAEIDQTIEDYQLCKNGFENAKYWRSQ 324
           MN+  EI Q I D++  KNGFE A+ W+S+
Sbjct: 258 MNTNEEISQAILDFRNAKNGFEGARTWKSK 287

Possible transcriptional coregulator. May contribute to the regulation of cellular processes via its interaction with BCL3. May play a role in the regulation of cell migration. May promote apoptosis when overexpressed. Has quercetin 2,3-dioxygenase activity (in vitro) (By similarity). May be required for efficient terminal myeloid maturation of hematopoietic cells.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 4

>sp|Q5M827|PIR_RAT Pirin OS=Rattus norvegicus GN=Pir PE=1 SV=1

 Score =  312 bits (799), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 148/283 (52%), Positives = 199/283 (70%), Gaps = 2/283 (0%)

Query: 44  RMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETV 103
           + V   V  +   +G GA VRR+IG  +L+ LDPFL+ DEF    P GFPDHPHRGFETV
Sbjct: 5   KKVTLSVLSREQSEGVGARVRRSIGGPELKMLDPFLLFDEFKGGRPGGFPDHPHRGFETV 64

Query: 104 TYMLQGG-ITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSD 162
           +Y+L+GG + H+DF GH G ++ GD+QWMTAGRGI+H+EMP  E   +GLQLW+NL  S+
Sbjct: 65  SYLLEGGSMAHEDFCGHVGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLKRSE 124

Query: 163 KMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQ 222
           KM+EP+YQE+ SEEI +   DGV V +I+GE++G++S VYTRTPT++LDF L   A+  Q
Sbjct: 125 KMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDQGAKHSQ 184

Query: 223 SIPETWNAFVYTIEGEGVFGTVNS-SAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQ 281
            IP+ W +F+YTI G+   G  ++   +  H   VL  GD +   N+  K+  FVLIAG+
Sbjct: 185 PIPKGWTSFIYTISGDVYIGPDDAQQKIEPHRTAVLGEGDTVQLENKDPKRSHFVLIAGE 244

Query: 282 PLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQ 324
           PL EPVVQ+GPFVMN+  EI + I D++  KNGFE AK W+S+
Sbjct: 245 PLREPVVQHGPFVMNTNEEISEAILDFRNAKNGFEGAKTWKSK 287

Possible transcriptional coregulator. May contribute to the regulation of cellular processes via its interaction with BCL3. May be required for efficient terminal myeloid maturation of hematopoietic cells. May play a role in the regulation of cell migration. May promote apoptosis when overexpressed. Has quercetin 2,3-dioxygenase activity (in vitro).

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 4

>sp|Q9HZ00|Y3240_PSEAE Putative quercetin 2,3-dioxygenase PA3240 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA3240 PE=3 SV=1

 Score =  192 bits (487), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 112/281 (39%), Positives = 157/281 (55%), Gaps = 13/281 (4%)

Query: 40  FSRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPP----AGFPDH 95
            +R R V +   G  + DG G  + R IG       DPFLMLD+F    P    AGFP H
Sbjct: 1   MTRYRDVLELHTGHPASDGAGVRLTRVIGGPSPERFDPFLMLDQFDTQNPDDYVAGFPSH 60

Query: 96  PHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAG-EGVQNGLQL 154
           PHRGFETVTYML+G + H+D  G++G +  G VQWMTA  GI+HSEMP   EG   G QL
Sbjct: 61  PHRGFETVTYMLEGRMRHEDHLGNRGLLKPGGVQWMTAAHGIIHSEMPEQVEGAMRGFQL 120

Query: 155 WINLSSSDKMIEPRYQEIPSEEIKRAET-DGVEVRIIA-----GESMGVRSPVYTRTPTM 208
           W+NL + +K+    Y++I  E++ R ET  GV+V +IA     G++  + +     T   
Sbjct: 121 WVNLPAKNKLAPAGYRDIEPEDVPRLETAGGVKVTVIAGRFDDGQAQQIGAVERPDTEPH 180

Query: 209 FLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNR 268
           + D  L    +I   +P+     +Y  EG           ++ + +  LS    LS   R
Sbjct: 181 YYDLQLPAGGRIAPRLPDGHRVLLYVYEGSLTVEGERPVEIATNRLARLSEEGELSL--R 238

Query: 269 SSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQ 309
           S    R +++AG+PL+EP+VQYGPFVMNS+ EI+Q + DY+
Sbjct: 239 SEAGARVLVLAGKPLHEPIVQYGPFVMNSREEIEQALRDYR 279

Putative quercetin 2,3-dioxygenase.

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 4

>sp|P58112|Y481_CAUCR Pirin-like protein CC_0481 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=CC_0481 PE=3 SV=1

 Score =  174 bits (441), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 105/274 (38%), Positives = 151/274 (55%), Gaps = 13/274 (4%)

Query: 44  RMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPA----GFPDHPHRG 99
           R V K V G+ + DG G  + R +G  + +  DPFLMLD F     +    GFPDHPHRG
Sbjct: 4   RPVLKIVKGQPTSDGAGVRLTRMLGTPEAQMFDPFLMLDCFDNDQASDYLGGFPDHPHRG 63

Query: 100 FETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPA-GEGVQNGLQLWINL 158
           FETVTYML+G + H+D +G +G I  G +QWM AG+GIVHSEMP   +G   G QLW+NL
Sbjct: 64  FETVTYMLEGRMRHKDNTGREGVIGPGGIQWMRAGKGIVHSEMPEQDQGRMRGFQLWVNL 123

Query: 159 SSSDKMIEPRYQEIPSEEIK-RAETDGVEVRIIAGES-MGVRSPV-YTRTPTMFLDFTLK 215
            +  KM  P YQE  ++ I   A   GV V++I+G +  G   P+       ++ D  L 
Sbjct: 124 PARLKMSAPGYQEFETDSIPVEARDGGVTVKVISGATETGTAGPIGGGAVDALYFDVALP 183

Query: 216 PRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRF 275
                 + + +  NA +   EG+     V    V A + + L  GD +     +    R 
Sbjct: 184 AGTVFEEPVGDDRNAMLAVYEGK---VRVAHDTVDALSGVFLGRGDTVRV--EAVTDARV 238

Query: 276 VLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQ 309
           +L+AG+P+ EPV  +GPFVM+++  + Q  +D+Q
Sbjct: 239 LLLAGRPIGEPVFWHGPFVMDTREGLMQAFDDFQ 272

Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
118487100	325	unknown [Populus trichocarpa]	0.987	0.990	0.776	1e-147
225433709	320	PREDICTED: pirin-like protein-like [Viti	0.914	0.931	0.795	1e-142
224128914	294	predicted protein [Populus trichocarpa]	0.901	1.0	0.812	1e-142
224069052	294	predicted protein [Populus trichocarpa]	0.901	1.0	0.816	1e-141
296089631	294	unnamed protein product [Vitis vinifera]	0.901	1.0	0.799	1e-140
449468738	295	PREDICTED: pirin-like protein-like [Cucu	0.901	0.996	0.8	1e-140
255572908	296	pirin, putative [Ricinus communis] gi|22	0.901	0.993	0.807	1e-138
356569117	324	PREDICTED: pirin-like protein-like [Glyc	0.984	0.990	0.708	1e-131
356527447	325	PREDICTED: pirin-like protein-like [Glyc	0.993	0.996	0.698	1e-130
359483033	352	PREDICTED: LOW QUALITY PROTEIN: pirin-li	0.914	0.846	0.74	1e-128

>gi|118487100|gb|ABK95380.1| unknown [Populus trichocarpa]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/327 (77%), Positives = 283/327 (86%), Gaps = 5/327 (1%)

Query: 1   MRALSSFRNRLPFKLYPSASIESNN---KIRNIMSASDESPCFSRPRMVAKKVHGKLSHD 57
           MRA S +RN L  +LYP  + +++N   +IRNIMS SD+S  F  PR+V KK+  KL H+
Sbjct: 1   MRA-SFYRNFLK-RLYPPTTTKASNSTHRIRNIMSESDQSIGFDTPRLVTKKILAKLQHE 58

Query: 58  GDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFS 117
           GDGAVVRR IGR + + LDPFLMLD+FSVSPPAGFPDHPHRGFETVTYMLQG ITHQDF+
Sbjct: 59  GDGAVVRRGIGRSEQKFLDPFLMLDDFSVSPPAGFPDHPHRGFETVTYMLQGSITHQDFA 118

Query: 118 GHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEI 177
           GHKGTIHTGDVQWMTAGRGI+HSEMPAGEG Q GLQLWINLSS DKMIEPRYQE+ S++I
Sbjct: 119 GHKGTIHTGDVQWMTAGRGIIHSEMPAGEGAQKGLQLWINLSSQDKMIEPRYQELLSDDI 178

Query: 178 KRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEG 237
           KRAE DG EVRIIAGESMGVRSPVYTRTPTM+LDFTLKPRAQ+HQ+IPE+WN FVY IEG
Sbjct: 179 KRAEKDGAEVRIIAGESMGVRSPVYTRTPTMYLDFTLKPRAQVHQNIPESWNGFVYVIEG 238

Query: 238 EGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQYGPFVMNS 297
           EGVFG  NSS+ +AH+VLVL  GDGLS WNRSSK LRFVLIAGQP+NEPVVQYGPFVMN+
Sbjct: 239 EGVFGKPNSSSSTAHHVLVLGPGDGLSVWNRSSKPLRFVLIAGQPINEPVVQYGPFVMNT 298

Query: 298 QAEIDQTIEDYQLCKNGFENAKYWRSQ 324
           +AEIDQTIEDY   KNGFE AKYWRSQ
Sbjct: 299 EAEIDQTIEDYHYSKNGFEMAKYWRSQ 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433709|ref|XP_002268298.1| PREDICTED: pirin-like protein-like [Vitis vinifera]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 237/298 (79%), Positives = 264/298 (88%)

Query: 27  IRNIMSASDESPCFSRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSV 86
           +R IMS SD S  F +PR+V KKV  K   +G+GAVVRR+IGR +L++LDPFLMLDEF+V
Sbjct: 23  VRKIMSGSDHSSGFDQPRLVVKKVLAKPQREGEGAVVRRSIGRSELKNLDPFLMLDEFAV 82

Query: 87  SPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGE 146
           +PPAGFPDHPHRGFETVTYMLQG  THQDF+GHKGTI TGDVQWMTAGRGI+HSEMPA E
Sbjct: 83  APPAGFPDHPHRGFETVTYMLQGAFTHQDFAGHKGTIRTGDVQWMTAGRGIIHSEMPADE 142

Query: 147 GVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTP 206
           G Q GLQLWINL+S DKMIEP YQE+PSE+IKRAE DGVEVR+IAGESMGVRSPVYTRTP
Sbjct: 143 GTQKGLQLWINLASKDKMIEPNYQELPSEDIKRAEKDGVEVRVIAGESMGVRSPVYTRTP 202

Query: 207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAW 266
           TM+LDFTLKPRAQ+HQSIPE+WN+FVY +EGEGVFG VNSS V+AH+VLVL  GDGLSAW
Sbjct: 203 TMYLDFTLKPRAQMHQSIPESWNSFVYIVEGEGVFGVVNSSPVTAHHVLVLGPGDGLSAW 262

Query: 267 NRSSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQ 324
           N+SSK LRFVLI GQPLNEPVVQYGPFVMN+Q EI+QTIEDY   KNGFE AKYWRSQ
Sbjct: 263 NKSSKPLRFVLIGGQPLNEPVVQYGPFVMNTQKEIEQTIEDYHYSKNGFEMAKYWRSQ 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128914|ref|XP_002320452.1| predicted protein [Populus trichocarpa] gi|222861225|gb|EEE98767.1| predicted protein [Populus trichocarpa]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 239/294 (81%), Positives = 261/294 (88%)

Query: 31  MSASDESPCFSRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPA 90
           MS SD+S  F  PR+V KK+  KL H+GDGAVVRR IGR + + LDPFLMLD+FSVSPPA
Sbjct: 1   MSESDQSIGFDTPRLVTKKILAKLQHEGDGAVVRRGIGRSEQKFLDPFLMLDDFSVSPPA 60

Query: 91  GFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQN 150
           GFPDHPHRGFETVTYMLQG ITHQDF+GHKGTIHTGDVQWMTAGRGI+HSEMPAGEG Q 
Sbjct: 61  GFPDHPHRGFETVTYMLQGSITHQDFAGHKGTIHTGDVQWMTAGRGIIHSEMPAGEGAQK 120

Query: 151 GLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFL 210
           GLQLWINLSS DKMIEPRYQE+ S++IKRAE DG EVRIIAGESMGVRSPVYTRTPTM+L
Sbjct: 121 GLQLWINLSSQDKMIEPRYQELLSDDIKRAEKDGAEVRIIAGESMGVRSPVYTRTPTMYL 180

Query: 211 DFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSS 270
           DFTLKPRAQ+HQ+IPE+WN FVY IEGEGVFG  NSS+ +AH+VLVL  GDGLS WNRSS
Sbjct: 181 DFTLKPRAQVHQNIPESWNGFVYVIEGEGVFGKPNSSSSTAHHVLVLGPGDGLSVWNRSS 240

Query: 271 KQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQ 324
           K LRFVLIAGQP+NEPVVQYGPFVMN++AEIDQTIEDY   KNGFE AKYWRSQ
Sbjct: 241 KPLRFVLIAGQPINEPVVQYGPFVMNTEAEIDQTIEDYHYSKNGFEMAKYWRSQ 294

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069052|ref|XP_002302888.1| predicted protein [Populus trichocarpa] gi|222844614|gb|EEE82161.1| predicted protein [Populus trichocarpa]

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/294 (81%), Positives = 263/294 (89%)

Query: 31  MSASDESPCFSRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPA 90
           MS SD+S  FS PR+V KKV  KL H+G+GAVVRR+IGR +L+ LDPFLMLD+FSVSPPA
Sbjct: 1   MSESDQSTGFSTPRLVTKKVLAKLQHEGEGAVVRRSIGRSELKFLDPFLMLDDFSVSPPA 60

Query: 91  GFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQN 150
           GFPDHPHRGFETVTYMLQGGITHQDF+GHKGTIHTGDVQWMTAGRGI+HSEMPAGEG Q 
Sbjct: 61  GFPDHPHRGFETVTYMLQGGITHQDFAGHKGTIHTGDVQWMTAGRGIIHSEMPAGEGEQK 120

Query: 151 GLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFL 210
           GLQLWINLSS DKMIEP YQE+ S++IK AE DGVEVRIIAG+SMGV+SPVYTRTPTM+L
Sbjct: 121 GLQLWINLSSQDKMIEPGYQELLSDDIKTAEKDGVEVRIIAGKSMGVQSPVYTRTPTMYL 180

Query: 211 DFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSS 270
           DFTLKPRAQ++QSIPE+WN FVY IEGEGVFG   SS V+AH+VLVL  GDGLS WNRSS
Sbjct: 181 DFTLKPRAQMNQSIPESWNGFVYIIEGEGVFGKPASSPVTAHHVLVLGPGDGLSVWNRSS 240

Query: 271 KQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQ 324
           K LRFVLIAGQP+NEPVVQYGPFVMN+QAEIDQTIEDY   KNGFE AKYWRSQ
Sbjct: 241 KPLRFVLIAGQPINEPVVQYGPFVMNTQAEIDQTIEDYHYSKNGFEMAKYWRSQ 294

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089631|emb|CBI39450.3| unnamed protein product [Vitis vinifera]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 235/294 (79%), Positives = 261/294 (88%)

Query: 31  MSASDESPCFSRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPA 90
           MS SD S  F +PR+V KKV  K   +G+GAVVRR+IGR +L++LDPFLMLDEF+V+PPA
Sbjct: 1   MSGSDHSSGFDQPRLVVKKVLAKPQREGEGAVVRRSIGRSELKNLDPFLMLDEFAVAPPA 60

Query: 91  GFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQN 150
           GFPDHPHRGFETVTYMLQG  THQDF+GHKGTI TGDVQWMTAGRGI+HSEMPA EG Q 
Sbjct: 61  GFPDHPHRGFETVTYMLQGAFTHQDFAGHKGTIRTGDVQWMTAGRGIIHSEMPADEGTQK 120

Query: 151 GLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFL 210
           GLQLWINL+S DKMIEP YQE+PSE+IKRAE DGVEVR+IAGESMGVRSPVYTRTPTM+L
Sbjct: 121 GLQLWINLASKDKMIEPNYQELPSEDIKRAEKDGVEVRVIAGESMGVRSPVYTRTPTMYL 180

Query: 211 DFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSS 270
           DFTLKPRAQ+HQSIPE+WN+FVY +EGEGVFG VNSS V+AH+VLVL  GDGLSAWN+SS
Sbjct: 181 DFTLKPRAQMHQSIPESWNSFVYIVEGEGVFGVVNSSPVTAHHVLVLGPGDGLSAWNKSS 240

Query: 271 KQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQ 324
           K LRFVLI GQPLNEPVVQYGPFVMN+Q EI+QTIEDY   KNGFE AKYWRSQ
Sbjct: 241 KPLRFVLIGGQPLNEPVVQYGPFVMNTQKEIEQTIEDYHYSKNGFEMAKYWRSQ 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468738|ref|XP_004152078.1| PREDICTED: pirin-like protein-like [Cucumis sativus] gi|449527671|ref|XP_004170833.1| PREDICTED: pirin-like protein-like [Cucumis sativus]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 236/295 (80%), Positives = 262/295 (88%), Gaps = 1/295 (0%)

Query: 31  MSASDESP-CFSRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPP 89
           MS+SD SP  F RPR V KK+  KL H+GDGAVVRR IGR DL++LDPFLMLD+FSVSPP
Sbjct: 1   MSSSDHSPPAFDRPRSVIKKILAKLQHEGDGAVVRRGIGRNDLKNLDPFLMLDDFSVSPP 60

Query: 90  AGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQ 149
           AGFPDHPHRGFETVTYMLQGGITHQDF+GHKGTI TGDVQWMTAGRGI+HSEMPAGEG Q
Sbjct: 61  AGFPDHPHRGFETVTYMLQGGITHQDFAGHKGTIRTGDVQWMTAGRGIIHSEMPAGEGSQ 120

Query: 150 NGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMF 209
            GLQLWINL+S DKM+EPRYQEI S+ I RAE DGVEVR+IAGESMGV SP+YTRTPTM+
Sbjct: 121 KGLQLWINLASHDKMMEPRYQEISSDNIPRAEKDGVEVRVIAGESMGVHSPIYTRTPTMY 180

Query: 210 LDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRS 269
           LDF+L+PRAQ+HQSIP+TW +FVY IEGEGVFG+ NSS V+AH+VLVL  GDGLS WNRS
Sbjct: 181 LDFSLRPRAQVHQSIPDTWTSFVYIIEGEGVFGSSNSSRVAAHHVLVLGGGDGLSVWNRS 240

Query: 270 SKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQ 324
           SK LRFVL+AG+PLNEP+VQYGPFVMNSQ+EIDQ IEDY   KNGFE AKYWRSQ
Sbjct: 241 SKPLRFVLVAGKPLNEPIVQYGPFVMNSQSEIDQAIEDYHYAKNGFEMAKYWRSQ 295

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572908|ref|XP_002527385.1| pirin, putative [Ricinus communis] gi|223533237|gb|EEF34992.1| pirin, putative [Ricinus communis]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/296 (80%), Positives = 259/296 (87%), Gaps = 2/296 (0%)

Query: 31  MSASD-ESPCFSRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPP 89
           MSASD +S  FSRPRMV KKV  K  H+GDGAVVRR IG  +LR LDPFLMLD+FSVSPP
Sbjct: 1   MSASDDQSSAFSRPRMVTKKVLAKPQHEGDGAVVRRGIGCNELRFLDPFLMLDDFSVSPP 60

Query: 90  AGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQ 149
           AGFPDHPHRGFETVTYMLQG ITHQDF+GHKGTIHTGDVQWMTAGRGI+HSEMPAGEG Q
Sbjct: 61  AGFPDHPHRGFETVTYMLQGAITHQDFAGHKGTIHTGDVQWMTAGRGIIHSEMPAGEGAQ 120

Query: 150 NGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMF 209
            GLQLWINLSS DKMIEPRYQE+ SE+IK AE DGVEVRIIAGESMGVRSPVYTRTPTM+
Sbjct: 121 KGLQLWINLSSEDKMIEPRYQELLSEDIKCAEKDGVEVRIIAGESMGVRSPVYTRTPTMY 180

Query: 210 LDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNR- 268
           LDFTLKPR Q+HQSIPE+WNAFVY IEGEG FG  N+S V A++VLVLS GDGLS WN+ 
Sbjct: 181 LDFTLKPRTQMHQSIPESWNAFVYIIEGEGAFGIRNTSVVQAYHVLVLSSGDGLSVWNKS 240

Query: 269 SSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQ 324
           SSK LRFVL+AGQP+NEPVVQ+GPFVMN+Q EI+QTIEDY   KNGFE  KYW SQ
Sbjct: 241 SSKTLRFVLVAGQPINEPVVQHGPFVMNTQKEIEQTIEDYHYAKNGFEMGKYWASQ 296

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569117|ref|XP_003552752.1| PREDICTED: pirin-like protein-like [Glycine max]

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 231/326 (70%), Positives = 262/326 (80%), Gaps = 5/326 (1%)

Query: 1   MRALSS--FRNRLPFKLYPSASIESNNKIRNIMSASDESPCFSRPRMVAKKVHGKLSHDG 58
           MRA+S     + L +++  S S+ S   +R IMS SD S  F+ PR+V KKV  K  H+G
Sbjct: 1   MRAISHHLLVSLLDWRISTSRSLFS---LRTIMSQSDHSSAFTTPRLVLKKVLAKSQHEG 57

Query: 59  DGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSG 118
           DGAVVRR IGR +L++LDPFLMLD FSVSPPAGFPDHPHRGFETVTYML+GGITHQDF+G
Sbjct: 58  DGAVVRRGIGRSELKNLDPFLMLDHFSVSPPAGFPDHPHRGFETVTYMLEGGITHQDFAG 117

Query: 119 HKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIK 178
           HKGTI  GDVQWMTAGRGI+HSEMPA      GLQLWINLSS DKM+EP YQE+PSE I 
Sbjct: 118 HKGTIRKGDVQWMTAGRGIIHSEMPAEANNNKGLQLWINLSSRDKMMEPNYQELPSENIP 177

Query: 179 RAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGE 238
           RAE DGVEVR+IAGE+MGV SPVYTRTPTM+L F + P  Q HQ IPE+WNAFVYTIEGE
Sbjct: 178 RAEKDGVEVRVIAGEAMGVHSPVYTRTPTMYLVFCMMPGTQWHQRIPESWNAFVYTIEGE 237

Query: 239 GVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQYGPFVMNSQ 298
           GVFG  +SS   AH+VLVLS GDGLS WN SSK LRFVLI GQPLNEPVVQYGPFVMN+Q
Sbjct: 238 GVFGCPSSSPTVAHHVLVLSQGDGLSVWNNSSKPLRFVLIGGQPLNEPVVQYGPFVMNTQ 297

Query: 299 AEIDQTIEDYQLCKNGFENAKYWRSQ 324
           +EI++TIEDY   +NGFE +KYW SQ
Sbjct: 298 SEIEKTIEDYHYGRNGFEMSKYWMSQ 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527447|ref|XP_003532322.1| PREDICTED: pirin-like protein-like [Glycine max]

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 260/325 (80%), Gaps = 1/325 (0%)

Query: 1   MRALSSFRNRLPFKLYPSASIES-NNKIRNIMSASDESPCFSRPRMVAKKVHGKLSHDGD 59
           MRA+S   + L +++  S S+ S  N   N MS SD S  F+ PR+V KKV  K  H+GD
Sbjct: 1   MRAISHHLSLLNWRISTSRSLFSLRNTCTNTMSQSDNSSPFTTPRLVLKKVLAKSQHEGD 60

Query: 60  GAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGH 119
           GAVVRR IGR +L++LDPFLMLD FSVSPPAGFPDHPHRGFETVTYML+GGITHQDF+GH
Sbjct: 61  GAVVRRGIGRSELKNLDPFLMLDHFSVSPPAGFPDHPHRGFETVTYMLEGGITHQDFAGH 120

Query: 120 KGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKR 179
           KGTI  GDVQWMTAGRGI+HSEMPA      GLQLWINLSS DKMIEP YQE+PSE I  
Sbjct: 121 KGTIRAGDVQWMTAGRGIIHSEMPAEANNNKGLQLWINLSSRDKMIEPNYQELPSENIAT 180

Query: 180 AETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEG 239
           AE DGVEVR+IAGE+MGV SPVYTRTPTM+L F++ P+ Q +QSIPE+WNAFVY IEGEG
Sbjct: 181 AEKDGVEVRVIAGEAMGVHSPVYTRTPTMYLVFSMMPKTQWNQSIPESWNAFVYIIEGEG 240

Query: 240 VFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQYGPFVMNSQA 299
           VFG+  SS    H+VLVL+ GDGLS WN SSK LRFVLI GQPLNEPVVQ+GPFVMN+Q+
Sbjct: 241 VFGSPTSSPTVPHHVLVLTQGDGLSVWNNSSKPLRFVLIGGQPLNEPVVQHGPFVMNTQS 300

Query: 300 EIDQTIEDYQLCKNGFENAKYWRSQ 324
           EI+ TIEDY   +NGFE +KYW SQ
Sbjct: 301 EIENTIEDYHYGRNGFEMSKYWMSQ 325

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483033|ref|XP_003632885.1| PREDICTED: LOW QUALITY PROTEIN: pirin-like protein-like [Vitis vinifera]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/300 (74%), Positives = 250/300 (83%), Gaps = 2/300 (0%)

Query: 27  IRNIMSASDESPCFSRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSV 86
           +R IMS SD S  F +PR+V KKV  K   +G+G VVRR+IG  +L++LDPFLMLDEF+V
Sbjct: 43  VRKIMSGSDHSSGFDQPRLVVKKVLAKPQREGEGVVVRRSIGMSELKNLDPFLMLDEFTV 102

Query: 87  SPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSE-MPAG 145
           +PPA FPDHP+RGFE VTYMLQG  THQDF+GHKGTI T DVQWMTAGRGI+HSE MPAG
Sbjct: 103 APPASFPDHPYRGFEIVTYMLQGAFTHQDFAGHKGTIRTXDVQWMTAGRGIIHSELMPAG 162

Query: 146 EGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRT 205
           EG Q GLQLWINL+S DKMIEP YQE PSE+IKRAE DGVEVR+IA ESMG+ SPVYTRT
Sbjct: 163 EGTQKGLQLWINLASKDKMIEPNYQEXPSEDIKRAEKDGVEVRVIARESMGLWSPVYTRT 222

Query: 206 PTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSA 265
           PT++LDFTLKPRAQ+H SIPE+WN FVY +EGEGVFG VNSS V+AH+VLVL   DGLS 
Sbjct: 223 PTIYLDFTLKPRAQMHXSIPESWNFFVYKVEGEGVFGVVNSSPVTAHHVLVLGPSDGLST 282

Query: 266 WNRSSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQS 325
           WN+SSK LRFVLI G P NEPVVQYGPFVMN + EI+QTIEDY   KNGFE AKYWRSQ 
Sbjct: 283 WNKSSKPLRFVLIGGXPPNEPVVQYGPFVMNXK-EIEQTIEDYHYSKNGFEMAKYWRSQC 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
TAIR|locus:2041026	321	AT2G43120 [Arabidopsis thalian	0.904	0.919	0.711	3.2e-113
TAIR|locus:2081187	287	PRN "pirin" [Arabidopsis thali	0.852	0.968	0.676	3.4e-100
TAIR|locus:2008091	310	AT1G50590 [Arabidopsis thalian	0.901	0.948	0.588	9e-93
TAIR|locus:2081267	271	AT3G59260 [Arabidopsis thalian	0.782	0.940	0.670	1.2e-90
UNIPROTKB|O00625	290	PIR "Pirin" [Homo sapiens (tax	0.861	0.968	0.533	2.8e-82
MGI|MGI:1916906	290	Pir "pirin" [Mus musculus (tax	0.861	0.968	0.522	7.6e-80
UNIPROTKB|A6QQH1	289	PIR "PIR protein" [Bos taurus	0.861	0.972	0.519	2.6e-79
RGD|1359212	291	Pir "pirin (iron-binding nucle	0.861	0.965	0.522	2.6e-79
UNIPROTKB|E2QSR0	292	PIR "Uncharacterized protein"	0.861	0.962	0.519	5.4e-79
ASPGD|ASPL0000048935	310	AN1460 [Emericella nidulans (t	0.812	0.854	0.494	2.5e-65

TAIR|locus:2041026 AT2G43120 [Arabidopsis thaliana (taxid:3702)]

 Score = 1117 (398.3 bits), Expect = 3.2e-113, P = 3.2e-113
 Identities = 217/305 (71%), Positives = 249/305 (81%)

Query:    27 IRNI--MSASDESPCFSRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEF 84
             IRNI  MS+S      SRP  V KKV  KL  +GDGAVVRR I R + + LDPFLMLDEF
Sbjct:    20 IRNIKSMSSSTSQDFVSRP--VIKKVFAKLQKEGDGAVVRRGISRSEQKLLDPFLMLDEF 77

Query:    85 SVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPA 144
             SVSPPAGFPDHPHRGFETVTY+L+GGITHQDF GHKGTI+ GDVQWMTAGRGI+HSEMP 
Sbjct:    78 SVSPPAGFPDHPHRGFETVTYVLEGGITHQDFKGHKGTIYAGDVQWMTAGRGIIHSEMPE 137

Query:   145 GEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTR 204
              E V  GLQLWINLSS++KMIEP YQE+   +I +AE +GVEV++IAGESMG++SPVYTR
Sbjct:   138 EE-VNKGLQLWINLSSNEKMIEPNYQELSHSDIPKAEQNGVEVKVIAGESMGIQSPVYTR 196

Query:   205 TPTMFLDFTLKPRAQIHQSIPETWNAFVYTIE---GEGVFGTVNSSAVSAHNVLVLSLG- 260
             TPTMFLDFTL+P AQIHQ++PE+WNAF Y +E   G GVF + NSS + AH+V+V   G 
Sbjct:   197 TPTMFLDFTLQPGAQIHQNVPESWNAFAYILESGEGGGVFSSSNSSPIPAHSVVVFGPGN 256

Query:   261 DGLSAWNRSS-KQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAK 319
             DG+S WN+SS KQLRFVLIAG+P+ EPVVQYGPFVMN+QAEID TIEDY   KNGFE AK
Sbjct:   257 DGVSVWNKSSSKQLRFVLIAGEPIGEPVVQYGPFVMNTQAEIDMTIEDYHYGKNGFEMAK 316

Query:   320 YWRSQ 324
             YWRSQ
Sbjct:   317 YWRSQ 321

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2081187 PRN "pirin" [Arabidopsis thaliana (taxid:3702)]

 Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
 Identities = 190/281 (67%), Positives = 228/281 (81%)

Query:    41 SRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGF 100
             S PR+V KKV  KL  +G+GAVVR  I + D + LDPF++L EFS S  AGFPDHPHRGF
Sbjct:     7 SVPRIVIKKVLAKLEKEGEGAVVRNGITKIDQKLLDPFVLLVEFSFSLSAGFPDHPHRGF 66

Query:   101 ETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSS 160
             E+VTYMLQGGI H+D  GHKGTI  GDVQWMTAGRGI+HSE P  E V NGLQLWINL S
Sbjct:    67 ESVTYMLQGGIIHKDPKGHKGTIQAGDVQWMTAGRGIIHSEFPEEE-VNNGLQLWINLPS 125

Query:   161 SDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQI 220
             ++KM EP+Y+E+ S +I RAE +GVEV++IAG+SMG++SPVYTRTPTMFLDFTLKP +Q 
Sbjct:   126 TEKMTEPKYKELSSLDIPRAEENGVEVKVIAGDSMGIKSPVYTRTPTMFLDFTLKPGSQT 185

Query:   221 HQSIPETWNAFVYTIEG-EGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRS-SKQLRFVLI 278
             HQ++PE+W AF Y IEG EGVFG++NSSA+SAH+V+V   GD +S WN+S S+ LRF+LI
Sbjct:   186 HQTVPESWTAFAYIIEGDEGVFGSLNSSAISAHHVVVFGPGDLVSVWNKSTSRSLRFLLI 245

Query:   279 AGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAK 319
             AG+P+ EPVVQ GPFVMNSQAEID   +DYQ  KNGFE AK
Sbjct:   246 AGEPIGEPVVQCGPFVMNSQAEIDMAFDDYQNAKNGFEMAK 286

GO:0005634 "nucleus" evidence=ISM

GO:0010244 "response to low fluence blue light stimulus by blue low-fluence system" evidence=NAS

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2008091 AT1G50590 [Arabidopsis thaliana (taxid:3702)]

 Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
 Identities = 179/304 (58%), Positives = 228/304 (75%)

Query:    31 MSASDESPCFSRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPA 90
             M  S++S   +  R+V KK+  +  H+G GAVVRR+IGR + R  DPFL+LDEFSVS PA
Sbjct:     1 MPISEKSSA-TNTRLVVKKLFARQLHEGFGAVVRRSIGRFEFRYFDPFLVLDEFSVSAPA 59

Query:    91 GFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGE--GV 148
             GFPDHPHRGFETVTYML+G I H+D  GHKG I  G +QWMTAG+GIVHSEMP+    G+
Sbjct:    60 GFPDHPHRGFETVTYMLEGEILHEDCEGHKGVIREGGLQWMTAGKGIVHSEMPSSNSNGI 119

Query:   149 QN--GLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTP 206
              +  GLQLWINLSS  K++EP YQEI S++I   E DGV VR+IAGE  GV+S + TRTP
Sbjct:   120 THNKGLQLWINLSSRQKLVEPSYQEIESKDIAETEKDGVRVRVIAGEWNGVKSKICTRTP 179

Query:   207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGT--VNSSAVSAHNVLVLSLG-DGL 263
             TM+LDFTL P ++I Q IP  WNAFVY ++G G FG   +  SA +AH++LVL LG D L
Sbjct:   180 TMYLDFTLSPGSRISQPIPLHWNAFVYVLQGHGHFGDSKLQHSAAAAHHLLVLGLGGDML 239

Query:   264 SAWNRSSK--QLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYW 321
              AWN S     LRF+L+AG+P+ EP+VQ+GPFVMN+Q EID+TI+D++  +NGFE A++W
Sbjct:   240 EAWNGSDSGLPLRFILVAGEPIGEPMVQFGPFVMNTQEEIDETIDDFENFRNGFEKARHW 299

Query:   322 RSQS 325
             +SQ+
Sbjct:   300 KSQA 303

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2081267 AT3G59260 [Arabidopsis thaliana (taxid:3702)]

 Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
 Identities = 173/258 (67%), Positives = 203/258 (78%)

Query:    69 RGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDV 128
             + D   LDPF+ L EFSVSPP GF DHPHRGFE+VTYM QGGI HQD +G+KGTIH GDV
Sbjct:    15 KSDHELLDPFVSLVEFSVSPPGGFKDHPHRGFESVTYMFQGGIIHQDCNGNKGTIHEGDV 74

Query:   129 QWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVR 188
             QWMTAGRGI+HSEMP  E V  GLQLWINL SS KMIEP+  EI S EI  A+  GVEV+
Sbjct:    75 QWMTAGRGIIHSEMPE-EQVNKGLQLWINLPSSAKMIEPKNIEISSSEIPSADDYGVEVK 133

Query:   189 IIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEG-EGVFGTVNSS 247
             +IAGESMGV+SP YT+TP MFLDFTL P+AQ HQ++PE+W AF Y +EG EGVF + +SS
Sbjct:   134 VIAGESMGVKSPFYTKTPIMFLDFTLDPKAQTHQAVPESWTAFAYIVEGDEGVFSSSDSS 193

Query:   248 AVSAHNVLVLSLGDGLSAWNRS-SKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIE 306
              V AHNV+V   GD +S WN S S+ LRF+LIAG+P+ EPVVQ+GPFVMNSQ EI+ TI 
Sbjct:   194 TVQAHNVVVFGTGDEVSVWNTSNSRPLRFLLIAGEPIGEPVVQHGPFVMNSQDEIEMTIG 253

Query:   307 DYQLCKNGFENAKYWRSQ 324
             DY+   NGFE AK+WRS+
Sbjct:   254 DYRNGMNGFEMAKHWRSE 271

GO:0005634 "nucleus" evidence=ISM

GO:0005516 "calmodulin binding" evidence=ISS

GO:0048446 "petal morphogenesis" evidence=RCA

UNIPROTKB|O00625 PIR "Pirin" [Homo sapiens (taxid:9606)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 151/283 (53%), Positives = 204/283 (72%)

Query:    44 RMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETV 103
             + V   V  +   +G GA VRR+IGR +L++LDPFL+ DEF    P GFPDHPHRGFETV
Sbjct:     5 KKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETV 64

Query:   104 TYMLQGG-ITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSD 162
             +Y+L+GG + H+DF GH G ++ GD+QWMTAGRGI+H+EMP  E   +GLQLW+NL SS+
Sbjct:    65 SYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRSSE 124

Query:   163 KMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQ 222
             KM+EP+YQE+ SEEI +   DGV V +I+GE++G++S VYTRTPT++LDF L P A+  Q
Sbjct:   125 KMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQ 184

Query:   223 SIPETWNAFVYTIEGEGVFGTVNSSA-VSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQ 281
              IP+ W +F+YTI G+   G  ++   +  H+  VL  GD +   N+  K+  FVLIAG+
Sbjct:   185 PIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAGE 244

Query:   282 PLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQ 324
             PL EPV+Q+GPFVMN+  EI Q I D++  KNGFE AK W+S+
Sbjct:   245 PLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSK 287

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0046872 "metal ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008127 "quercetin 2,3-dioxygenase activity" evidence=IDA

GO:0003712 "transcription cofactor activity" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0030224 "monocyte differentiation" evidence=IMP

MGI|MGI:1916906 Pir "pirin" [Mus musculus (taxid:10090)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 148/283 (52%), Positives = 201/283 (71%)

Query:    44 RMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETV 103
             + V   V  +   +G GA VRR+IGR +L++LDPFL+ DEF    P GFPDHPHRGFETV
Sbjct:     5 KKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGKPGGFPDHPHRGFETV 64

Query:   104 TYMLQGG-ITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSD 162
             +Y+L+GG + H+DF GH G ++ GD+QWMTAGRGI+H+EMP  E   +GLQLW+NL  S+
Sbjct:    65 SYLLEGGSMAHEDFCGHVGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRRSE 124

Query:   163 KMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQ 222
             KM+ P+YQE+ SEEI +   DGV V +I+GE++G++S VYTRTPT++LDF L   A+  Q
Sbjct:   125 KMVAPQYQELKSEEIPKPTKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDQGAKHSQ 184

Query:   223 SIPETWNAFVYTIEGEGVFGTVNSSA-VSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQ 281
              IP+ W +F+YTI G+   G  ++   +  H+  VL  GD +   N+  K+  FVLIAG+
Sbjct:   185 PIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDAVQLENKDPKRSHFVLIAGE 244

Query:   282 PLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQ 324
             PL EPVVQ+GPFVMN+  EI Q I D++  KNGFE A+ W+S+
Sbjct:   245 PLREPVVQHGPFVMNTNEEISQAILDFRNAKNGFEGARTWKSK 287

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0008127 "quercetin 2,3-dioxygenase activity" evidence=ISO;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

GO:0030099 "myeloid cell differentiation" evidence=IMP

GO:0030224 "monocyte differentiation" evidence=ISO

GO:0046872 "metal ion binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO;IDA

UNIPROTKB|A6QQH1 PIR "PIR protein" [Bos taurus (taxid:9913)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 147/283 (51%), Positives = 201/283 (71%)

Query:    44 RMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETV 103
             + V   V  +   +G GA VRR+IGR +L++LDPFL+ DEF    P GFPDHPHRGFETV
Sbjct:     4 KKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETV 63

Query:   104 TYMLQGG-ITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSD 162
             +Y+L+GG + H+DF GH G ++ GD+QWMTAG+GI+H+EMP  E   +GLQLW+NL SS 
Sbjct:    64 SYLLEGGSMAHEDFCGHAGQLNPGDLQWMTAGQGIMHAEMPCSEEPVHGLQLWVNLRSSQ 123

Query:   163 KMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQ 222
             KM++PRYQE+ S+EI +   DGV V +I+GE++G++S +YT TPT++LDF L   A+  Q
Sbjct:   124 KMVKPRYQELKSDEIPKPSQDGVTVAVISGEALGIKSKIYTYTPTLYLDFKLDQGAKHVQ 183

Query:   223 SIPETWNAFVYTIEGEGVFGTVNSSA-VSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQ 281
             SIP+ W +F+YTI G    G  ++   +  H+  VL  GD +   N+  ++  FVLIAG+
Sbjct:   184 SIPKGWTSFIYTISGNVYIGPDDAQQKIEPHHTAVLGEGDSVHVENKDPERSHFVLIAGE 243

Query:   282 PLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQ 324
             PL EPVVQ+GPFVMN+  EI Q I D++  KNGFE AK W+S+
Sbjct:   244 PLKEPVVQHGPFVMNTDEEISQAILDFRNAKNGFERAKTWKSK 286

GO:0046872 "metal ion binding" evidence=IEA

GO:0030224 "monocyte differentiation" evidence=IEA

GO:0008127 "quercetin 2,3-dioxygenase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1359212 Pir "pirin (iron-binding nuclear protein)" [Rattus norvegicus (taxid:10116)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 148/283 (52%), Positives = 199/283 (70%)

Query:    44 RMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETV 103
             + V   V  +   +G GA VRR+IG  +L+ LDPFL+ DEF    P GFPDHPHRGFETV
Sbjct:     5 KKVTLSVLSREQSEGVGARVRRSIGGPELKMLDPFLLFDEFKGGRPGGFPDHPHRGFETV 64

Query:   104 TYMLQGG-ITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSD 162
             +Y+L+GG + H+DF GH G ++ GD+QWMTAGRGI+H+EMP  E   +GLQLW+NL  S+
Sbjct:    65 SYLLEGGSMAHEDFCGHVGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLKRSE 124

Query:   163 KMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQ 222
             KM+EP+YQE+ SEEI +   DGV V +I+GE++G++S VYTRTPT++LDF L   A+  Q
Sbjct:   125 KMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDQGAKHSQ 184

Query:   223 SIPETWNAFVYTIEGEGVFGTVNSSA-VSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQ 281
              IP+ W +F+YTI G+   G  ++   +  H   VL  GD +   N+  K+  FVLIAG+
Sbjct:   185 PIPKGWTSFIYTISGDVYIGPDDAQQKIEPHRTAVLGEGDTVQLENKDPKRSHFVLIAGE 244

Query:   282 PLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQ 324
             PL EPVVQ+GPFVMN+  EI + I D++  KNGFE AK W+S+
Sbjct:   245 PLREPVVQHGPFVMNTNEEISEAILDFRNAKNGFEGAKTWKSK 287

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0008127 "quercetin 2,3-dioxygenase activity" evidence=ISO;ISS

GO:0030099 "myeloid cell differentiation" evidence=ISO

GO:0030224 "monocyte differentiation" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=ISO;ISS

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|E2QSR0 PIR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
 Identities = 148/285 (51%), Positives = 202/285 (70%)

Query:    44 RMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETV 103
             + V   V  +   +G GA VRR+IGR +L++LDPFL+ DEF    P GFPDHPHRGFETV
Sbjct:     5 KKVTLSVLSREQAEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETV 64

Query:   104 TYMLQGG-ITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSD 162
             +Y+L+GG + H+DF GH G ++ GD+QWMTAGRGI+H+EMP  E   +GLQLW+NL SS+
Sbjct:    65 SYLLEGGSMAHEDFCGHVGQMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRSSE 124

Query:   163 KMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQ 222
             KM+EP+YQE+ S+EI +   DGV V +I+GE++G++S +YTRTPT++LDF L   A+  Q
Sbjct:   125 KMVEPQYQELKSKEIPKPSKDGVTVAVISGEALGIKSKIYTRTPTLYLDFKLDQGAKHSQ 184

Query:   223 SIPETWNAFVYTIEGEGVFGTVNSSA-VSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQ 281
              IP+ W +F+YTI G    G  ++   +  H+  VL  GD +   N+  ++  FVLIAG+
Sbjct:   185 PIPKGWTSFIYTISGNVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPERSHFVLIAGE 244

Query:   282 PLNEPVVQY--GPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQ 324
             PL EPVVQ+  GPFVMN+  EI Q I D++  KNGFE AK W+S+
Sbjct:   245 PLREPVVQHALGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSK 289

GO:0046872 "metal ion binding" evidence=IEA

GO:0030224 "monocyte differentiation" evidence=IEA

GO:0008127 "quercetin 2,3-dioxygenase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ASPGD|ASPL0000048935 AN1460 [Emericella nidulans (taxid:162425)]

 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 136/275 (49%), Positives = 184/275 (66%)

Query:    57 DGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDF 116
             +G GA VRR+IG   LR+  PFLMLD F++   AGFPDHPHRG ET+TY+L GG+ H+DF
Sbjct:    18 EGAGARVRRSIGTPKLRNFSPFLMLDHFTIGKGAGFPDHPHRGQETITYLLSGGVDHEDF 77

Query:   117 SGHKGTIHTGDVQWMTAGRGIVHSEMPAG--EGVQN-GLQLWINLSSSDKMIEPRYQEIP 173
             +G+KGTI  GD+Q+MTAG+GI+H+EMP    +G  N G+QLW++L    KM EPRY+++ 
Sbjct:    78 AGNKGTIGPGDLQFMTAGKGIMHAEMPHENEDGSPNVGMQLWVDLPKKLKMCEPRYRDLR 137

Query:   174 SEEIKRAETD-G-VEVRIIAGESMGVRSPV-YTRTPTMFLDFTLKPRAQIHQSIPETWNA 230
             + EI  A  D G V V++I+G+S GV S      TP   LD  +KP  +I Q +P  WNA
Sbjct:   138 ASEIPVATVDQGRVTVKVISGQSHGVDSVRDLAYTPVWLLDVAIKPGGRITQILPVGWNA 197

Query:   231 FVYTIEGEGVFGTVNSSAV--SAHNVLVLSLGDGLSAW--NRSSKQLRFVLIAGQPLNEP 286
             F YT+ G  VFG+ NS+ +    HNV+    GD + A   + + +  RF+L+AGQPL++ 
Sbjct:   198 FAYTLAGTTVFGSNNSTQLVKQFHNVVFEQSGDHVEASVPDNAEEDSRFILVAGQPLDQK 257

Query:   287 VVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYW 321
             VVQYGPFV+ SQ E+ Q + DYQ   NGFE  + W
Sbjct:   258 VVQYGPFVLTSQEEVYQAMLDYQTASNGFERVRGW 292

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O00625	PIR_HUMAN	1, ., 1, 3, ., 1, 1, ., 2, 4	0.5335	0.8619	0.9689	yes	no
Q9ZW82	PIRL2_ARATH	No assigned EC number	0.7114	0.9049	0.9190	yes	no
P58112	Y481_CAUCR	No assigned EC number	0.3832	0.8006	0.9456	yes	no
Q9HZ00	Y3240_PSEAE	1, ., 1, 3, ., 1, 1, ., 2, 4	0.3985	0.8220	0.9403	yes	no
Q9D711	PIR_MOUSE	1, ., 1, 3, ., 1, 1, ., 2, 4	0.5407	0.8220	0.9241	yes	no
Q9SEE4	PIRL_SOLLC	No assigned EC number	0.7152	0.8834	0.9896	N/A	no
Q5M827	PIR_RAT	1, ., 1, 3, ., 1, 1, ., 2, 4	0.5229	0.8619	0.9656	yes	no
Q9KKY1	Y3769_VIBCH	1, ., 1, 3, ., 1, 1, ., 2, 4	0.3785	0.8067	0.9326	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00140976	SubName- Full=Putative uncharacterized protein; (294 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.217330001	Predicted protein (189 aa)	•								0.482

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	326
COG1741	276	COG1741, COG1741, Pirin-related protein [General f	2e-79
pfam02678	107	pfam02678, Pirin, Pirin	7e-46
pfam05726	102	pfam05726, Pirin_C, Pirin C-terminal cupin domain	5e-41

>gnl|CDD|224655 COG1741, COG1741, Pirin-related protein [General function prediction only]

 Score =  242 bits (620), Expect = 2e-79
 Identities = 106/270 (39%), Positives = 138/270 (51%), Gaps = 13/270 (4%)

Query: 51  HGKLSHDGDGA---VVRRAIGRGDLRSLDPFLMLDEFSVS---PPAGFPDHPHRGFETVT 104
            G     GD     + R      D   + PFL LD        P  GFP HPHRG ETVT
Sbjct: 10  RGIGHATGDWLGVRLTRSFGPYYDPALVGPFLFLDVIGPDVLAPGRGFPPHPHRGLETVT 69

Query: 105 YMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQN--GLQLWINLSSSD 162
           Y+L G I H+D  G+KG I  GDVQWMTAG GIVHSEM      +   GLQLW+NL ++D
Sbjct: 70  YVLDGEIEHRDSLGNKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLWVNLPAAD 129

Query: 163 KMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQ 222
           KMI PRYQ +   +       G+  R+IAG   G+ SPV   +     D  L+  A++  
Sbjct: 130 KMIAPRYQHLAFPDEIPRVELGLTARVIAGRDGGLSSPVRQDSLHYV-DLRLEAGARLQL 188

Query: 223 SIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP 282
             P    A++Y IEG                + +L  GD ++    S    R +L+ G P
Sbjct: 189 P-PAGRRAYLYVIEGTLEVNGQ--HETDGDGLAILD-GDEITLVADSPAGARVLLLDGPP 244

Query: 283 LNEPVVQYGPFVMNSQAEIDQTIEDYQLCK 312
           L EP+V YGPFVMNS+ EI+Q   D++  +
Sbjct: 245 LGEPIVIYGPFVMNSKEEIEQAKRDWREGR 274

Length = 276

>gnl|CDD|217181 pfam02678, Pirin, Pirin

 Score =  150 bits (382), Expect = 7e-46
 Identities = 63/107 (58%), Positives = 69/107 (64%), Gaps = 10/107 (9%)

Query: 60  GAVVRRAIGR-GDLRSLDPFLMLDEF--------SVSPPAGFPDHPHRGFETVTYMLQGG 110
           G  VRRA GR G L+  DPF  LD F        S    AGFP HPHRGFETVTY+L+G 
Sbjct: 1   GFRVRRARGRGGWLQLRDPFSFLDHFGPALLGFGSDYIGAGFPPHPHRGFETVTYLLEGE 60

Query: 111 ITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQN-GLQLWI 156
           I H+D  G+ G I  GDVQWMTAGRGIVHSEMP   G    GLQLW+
Sbjct: 61  IEHRDSLGNHGVIRPGDVQWMTAGRGIVHSEMPPSSGGPLHGLQLWV 107

This family consists of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures. A tomato homologue of human Pirin has been found to be induced during programmed cell death. Human Pirin interacts with Bcl-3 and NFI and hence is probably involved in the regulation of DNA transcription and replication. It appears to be an Fe(II)-containing member of the Cupin superfamily. Length = 107

>gnl|CDD|203319 pfam05726, Pirin_C, Pirin C-terminal cupin domain

 Score =  138 bits (349), Expect = 5e-41
 Identities = 41/106 (38%), Positives = 60/106 (56%), Gaps = 4/106 (3%)

Query: 209 FLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNR 268
           +LD TL+  A+    +PE W   +Y +EG G  G      +    + VL  GD +    R
Sbjct: 1   YLDITLEAGARFTLPLPEGWERAIYVLEGSGEVGG--EDIIDEGRLAVLGPGDEI--VVR 56

Query: 269 SSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNG 314
           +    RF+L+ G+PL EPVV YGPFVMN++ EI+Q  ED++  + G
Sbjct: 57  AGAGARFLLLGGEPLGEPVVIYGPFVMNTKEEIEQAKEDWREGRFG 102

This region is found the C-terminal half of the Pirin protein. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	326
COG1741	276	Pirin-related protein [General function prediction	100.0
PF02678	107	Pirin: Pirin; InterPro: IPR003829 This entry repre	100.0
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	99.97
PRK11171	266	hypothetical protein; Provisional	98.91
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	98.6
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	98.53
PRK13290	125	ectC L-ectoine synthase; Reviewed	97.3
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	97.18
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	97.04
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	96.86
smart00835	146	Cupin_1 Cupin. This family represents the conserve	96.81
COG3257	264	GlxB Uncharacterized protein, possibly involved in	96.55
PRK11171	266	hypothetical protein; Provisional	96.21
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	96.15
PRK13290	125	ectC L-ectoine synthase; Reviewed	95.96
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	95.9
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	95.5
COG1917	131	Uncharacterized conserved protein, contains double	95.45
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	95.39
COG3257	264	GlxB Uncharacterized protein, possibly involved in	95.31
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	95.3
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	94.76
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	94.2
smart00835	146	Cupin_1 Cupin. This family represents the conserve	94.19
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	93.51
COG1917	131	Uncharacterized conserved protein, contains double	93.43
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	93.34
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	93.27
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	92.82
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	92.61
COG3837	161	Uncharacterized conserved protein, contains double	92.48
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	92.45
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	92.13
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	92.05
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	92.02
COG3837	161	Uncharacterized conserved protein, contains double	91.96
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	91.43
PF04962	261	KduI: KduI/IolB family; InterPro: IPR021120 The Kd	90.66
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	90.43
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	89.87
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	89.68
PF05962	184	HutD: HutD; InterPro: IPR010282 This entry contain	88.92
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	88.71
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	88.67
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	88.01
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	85.8
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	85.71
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	85.24
PRK04190	191	glucose-6-phosphate isomerase; Provisional	85.07
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	84.06
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	83.6
PLN02288	394	mannose-6-phosphate isomerase	82.1

>COG1741 Pirin-related protein [General function prediction only]

Probab=100.00  E-value=5e-73  Score=531.43  Aligned_cols=268  Identities=42%  Similarity=0.711  Sum_probs=238.4

Q ss_pred             cccccccceEEcCCccCCCCceEEEEecCCCCCCCC-CceEEeeccc---CCCCCCCCCCCCCCceEEEEEeeceEEEec
Q 020448           40 FSRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSL-DPFLMLDEFS---VSPPAGFPDHPHRGFETVTYMLQGGITHQD  115 (326)
Q Consensus        40 ~~~~r~i~~~~~~~~~~~G~g~~v~r~~~~~~~~~~-dPfl~lD~~~---~~~~~GF~~HPHrG~EtvTyvl~G~l~H~D  115 (326)
                      |...|.+.++.......+|.|.+..|.++......+ +||++||++.   +.|+.+|++|||||||||||||+|+++|+|
T Consensus         1 m~~~r~~~~~~~~~~~~d~~~~~~~~~f~~~~~~~~~~pF~~ld~~~~~~~~pG~~f~pHPHrg~etvTyvl~G~i~HrD   80 (276)
T COG1741           1 MITIRTAIERGIGHATGDWLGVRLTRSFGPYYDPALVGPFLFLDVIGPDVLAPGRGFPPHPHRGLETVTYVLDGEIEHRD   80 (276)
T ss_pred             CccchhHHHhCcccccCCCCCeeEEEEecCCcCccccCCccceeecccccccCCCcCCCCCCCCcEEEEEEEccEEEEee
Confidence            445677777776666677666666666665554445 9999999998   567778999999999999999999999999


Q ss_pred             CCCCeeeeeCCcEEEEecCCCeEEEeeeC--CCCceeEEEEEeccCCCCCCCCCCccccC-CCccceecCCCeEEEEEeC
Q 020448          116 FSGHKGTIHTGDVQWMTAGRGIVHSEMPA--GEGVQNGLQLWINLSSSDKMIEPRYQEIP-SEEIKRAETDGVEVRIIAG  192 (326)
Q Consensus       116 S~Gn~~~i~~GdvQwMtAGsGI~HsE~~~--~~~~~~~lQLWinLP~~~k~~~P~Y~~~~-~~~iP~~~~~g~~~rViaG  192 (326)
                      |+||+++|+||||||||||+||+|||+|.  .++++|+||||||||++.|+.+|+|+++. ++++|.... +..+||++|
T Consensus        81 S~Gn~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlWv~lP~~~k~~~P~yq~~~~~~~~p~~~~-g~~~rvi~G  159 (276)
T COG1741          81 SLGNKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLWVNLPAADKMIAPRYQHLAFPDEIPRVEL-GLTARVIAG  159 (276)
T ss_pred             cCCceeeecccceeEEcCCCceeecccCCccCCCccceeeeecCCchhhccCCcccccccCcccCceeec-ceEEEEecc
Confidence            99999999999999999999999999997  46799999999999999999999999999 899999876 889999999


Q ss_pred             CCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCcCcee-ecCccEEEEcCCCeEEEEecCCC
Q 020448          193 ESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSA-VSAHNVLVLSLGDGLSAWNRSSK  271 (326)
Q Consensus       193 ~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~~~~-l~~~d~~~l~~g~~l~i~a~~~~  271 (326)
                      ++.|..+|+...+ +.++|+.|++|+++.++ |+++++||||++|.+.|+|   +. +....+++++ |+.+++++.++.
T Consensus       160 ~~~g~~~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~g---~~~~~~~~l~i~~-g~~i~l~a~~~~  233 (276)
T COG1741         160 RDGGLSSPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVNG---QHETDGDGLAILD-GDEITLVADSPA  233 (276)
T ss_pred             ccCCcccccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEcc---cccccccceEEec-CCeEEEEecCCC
Confidence            9999999999999 99999999999999999 9999999999999999999   55 5555555555 888888886456


Q ss_pred             CeEEEEEeeccCCCceeeeCCcccCcHHHHHHHHHHHhccCCC
Q 020448          272 QLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNG  314 (326)
Q Consensus       272 ~a~~LL~~G~pl~epi~~~GpFVmnt~~ei~~A~~dy~~g~~g  314 (326)
                      ++++|||+|+|++||+++||||||||+|||+||++||++|+|.
T Consensus       234 ~a~vLL~~g~P~~~~~~~~g~fV~~s~e~i~~a~~~~~~g~f~  276 (276)
T COG1741         234 GARVLLLDGPPLGEPIVIYGPFVMNSKEEIEQAKRDWREGRFP  276 (276)
T ss_pred             CeEEEEEcCCCCCCceeEECCcccCCHHHHHHHHHHHHcCCCC
Confidence            7999999999999999999999999999999999999999974

>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=100.00  E-value=6.9e-36  Score=244.25  Aligned_cols=97  Identities=59%  Similarity=1.017  Sum_probs=86.9

Q ss_pred             ceEEEEecCC-CCCCCCCceEEeecccC---C--C---CCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEE
Q 020448           60 GAVVRRAIGR-GDLRSLDPFLMLDEFSV---S--P---PAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQW  130 (326)
Q Consensus        60 g~~v~r~~~~-~~~~~~dPfl~lD~~~~---~--~---~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQw  130 (326)
                      |++|+|.+|. .....++||+++|++..   .  +   +.||++|||+|+||||||++|++.|+||+||.++|++|+|||
T Consensus         1 ~~~~~r~~~~~~~~~~~~pF~f~d~~~p~~~~~g~d~i~~gf~~HPH~g~eivTyv~~G~~~H~Ds~G~~~~l~~G~vq~   80 (107)
T PF02678_consen    1 GFRVRRVLPNHGWLQSRDPFSFLDYFDPANMAFGPDYIGAGFPMHPHRGFEIVTYVLEGELRHRDSLGNRGVLRAGDVQW   80 (107)
T ss_dssp             -EEECCGTCSTCCGCCCCTEEEEEEEETCECSETTEEETTEEEEEEECSEEEEEEEEESEEEEEETTSEEEEEETTEEEE
T ss_pred             CeEEeecCCCCCcccccCccCcccccCccccCCCccccCCCCCCcCCCCceEEEEEecCEEEEECCCCCeeEeCCCeEEE
Confidence            6899999998 67789999999999763   1  2   579999999999999999999999999999999999999999


Q ss_pred             EecCCCeEEEeeeCCC-CceeEEEEEe
Q 020448          131 MTAGRGIVHSEMPAGE-GVQNGLQLWI  156 (326)
Q Consensus       131 MtAGsGI~HsE~~~~~-~~~~~lQLWi  156 (326)
                      |+||+||.|+|+|.++ +++++|||||
T Consensus        81 m~AG~Gi~H~E~~~~~~~~~~~lQlWi  107 (107)
T PF02678_consen   81 MTAGSGIVHSERNASDGGPLHGLQLWI  107 (107)
T ss_dssp             EE-TTTEEEEEEE-TSSS-EEEEEEEE
T ss_pred             EeCCCCceEEEecCCCCCeEEEEEEcC
Confidence            9999999999999885 8999999997

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=99.97  E-value=1.4e-31  Score=217.85  Aligned_cols=104  Identities=43%  Similarity=0.755  Sum_probs=86.4

Q ss_pred             EEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeeccCCCcee
Q 020448          209 FLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVV  288 (326)
Q Consensus       209 ~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl~epi~  288 (326)
                      |+|++|++|+++++++|+++++++||++|++.|++.. ..+.+++++.|++++.+++++.+ +++||||++|+||+|||+
T Consensus         1 y~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~~~~-~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~GePl~Epi~   78 (104)
T PF05726_consen    1 YLDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVGGEE-DPLEAGQLVVLEDGDEIELTAGE-EGARFLLLGGEPLNEPIV   78 (104)
T ss_dssp             EEEEEE-TT-EEEEEEETT-EEEEEEEESEEEETTTT-EEEETTEEEEE-SECEEEEEESS-SSEEEEEEEE----S--E
T ss_pred             CEEEEECCCCEEEeecCCCCEEEEEEEECcEEECCCc-ceECCCcEEEECCCceEEEEECC-CCcEEEEEEccCCCCCEE
Confidence            7899999999999999999999999999999999821 35999999999988999999963 799999999999999999


Q ss_pred             eeCCcccCcHHHHHHHHHHHhccCCC
Q 020448          289 QYGPFVMNSQAEIDQTIEDYQLCKNG  314 (326)
Q Consensus       289 ~~GpFVmnt~~ei~~A~~dy~~g~~g  314 (326)
                      +||||||||++||+||++|||+|+||
T Consensus        79 ~~GpFVmnt~eeI~qA~~dy~~g~fg  104 (104)
T PF05726_consen   79 QYGPFVMNTREEIEQAFEDYQNGKFG  104 (104)
T ss_dssp             EETTEEESSHHHHHHHHHHHHCT-T-
T ss_pred             EECCcccCCHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999997

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>PRK11171 hypothetical protein; Provisional

Probab=98.91  E-value=7.7e-07  Score=83.99  Aligned_cols=182  Identities=20%  Similarity=0.236  Sum_probs=122.4

Q ss_pred             cCCCCCCCCCCCCC-CceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCCC--
Q 020448           85 SVSPPAGFPDHPHR-GFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSS--  161 (326)
Q Consensus        85 ~~~~~~GF~~HPHr-G~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~~--  161 (326)
                      .+.|+.+...|.|. +.|.+-||++|+++-.. -|..-.|.+||.-...++  ..|+=.|..+++++.  ||+.-|-+  
T Consensus        67 ~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~-~g~~~~L~~GDsi~~p~~--~~H~~~N~g~~~a~~--l~v~~~y~~~  141 (266)
T PRK11171         67 EVEPGGGSDQPEPDEGAETFLFVVEGEITLTL-EGKTHALSEGGYAYLPPG--SDWTLRNAGAEDARF--HWIRKRYEPV  141 (266)
T ss_pred             EECCCCcCCCCCCCCCceEEEEEEeCEEEEEE-CCEEEEECCCCEEEECCC--CCEEEEECCCCCEEE--EEEEcCCeEc
Confidence            35566566666665 88999999999988764 255678999999999988  568888877777665  56642211  


Q ss_pred             CCCCCCCccccCCCccceec---CCCeEEEE-EeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeec
Q 020448          162 DKMIEPRYQEIPSEEIKRAE---TDGVEVRI-IAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEG  237 (326)
Q Consensus       162 ~k~~~P~Y~~~~~~~iP~~~---~~g~~~rV-iaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G  237 (326)
                      ....+|.-.--...+++...   .+|..++. +.+.       -....+..+..+.|++|+++.+.-..+..-.+||++|
T Consensus       142 ~~~~~p~~~~~~~~d~~~~~~~g~~g~~~~~~~~~p-------~~~~~~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G  214 (266)
T PRK11171        142 EGHEAPEAFVGNESDIEPIPMPGTDGVWATTRLVDP-------EDLRFDMHVNIVTFEPGASIPFVETHVMEHGLYVLEG  214 (266)
T ss_pred             CCCCCCCeEecchhcccccccCCCCCeEEEEEeeCc-------hhcCCCcEEEEEEECCCCEEccCcCCCceEEEEEEeC
Confidence            11224431111122333222   23444443 3222       1223346788899999999887545677799999999


Q ss_pred             ceEEcC-cCceeecCccEEEEcCCCeEEEEecCCCCeEEEEE
Q 020448          238 EGVFGT-VNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLI  278 (326)
Q Consensus       238 ~~~i~g-~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~  278 (326)
                      ++++.. .+...|.+||.+.+..+..-.+.+.+++.+++|++
T Consensus       215 ~~~~~~~~~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~  256 (266)
T PRK11171        215 KGVYRLNNDWVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLY  256 (266)
T ss_pred             EEEEEECCEEEEeCCCCEEEECCCCCEEEECCCCCcEEEEEE
Confidence            988742 23378999999999977777888766678888876

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=98.60  E-value=1.3e-05  Score=75.49  Aligned_cols=202  Identities=13%  Similarity=0.153  Sum_probs=124.0

Q ss_pred             ceEEEEecCCCCC--CCCCceEEeecccCCCCCCC-CCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCC
Q 020448           60 GAVVRRAIGRGDL--RSLDPFLMLDEFSVSPPAGF-PDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRG  136 (326)
Q Consensus        60 g~~v~r~~~~~~~--~~~dPfl~lD~~~~~~~~GF-~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsG  136 (326)
                      +++++.+.....-  ..|..+++    .+.|+.+. ..|+|.|.|.+-||++|+++=.. -|..-.|++||.-.+.||. 
T Consensus        41 ~~~~~~l~~P~~g~~~~f~~~~v----~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~-~g~~~~L~~Gd~~y~pa~~-  114 (260)
T TIGR03214        41 NTDIWILSRPKLGFAATFVQYIV----EVHPGGGNTTGFGGEGIETFLFVISGEVNVTA-EGETHELREGGYAYLPPGS-  114 (260)
T ss_pred             ccEEEEEcCCCCCCCCcEEEEEE----EECCCCcCCCCCCCCceEEEEEEEeCEEEEEE-CCEEEEECCCCEEEECCCC-
Confidence            4556555543211  23333333    34554443 35678999999999999986552 2455699999999999996 


Q ss_pred             eEEEeeeCCCCceeEEEEEeccCCC-CCC-CCCCccccCCCcccee---cCCCeEEEEEeCCCCCCcCcccccCccEEEE
Q 020448          137 IVHSEMPAGEGVQNGLQLWINLSSS-DKM-IEPRYQEIPSEEIKRA---ETDGVEVRIIAGESMGVRSPVYTRTPTMFLD  211 (326)
Q Consensus       137 I~HsE~~~~~~~~~~lQLWinLP~~-~k~-~~P~Y~~~~~~~iP~~---~~~g~~~rViaG~~~g~~sp~~~~~~~~~~d  211 (326)
                       .|.=.|.++.++++  +|+.-+-+ .+. .+|.-.--..+++|..   ..++..+|.+. ..       ...-+..+-.
T Consensus       115 -~H~~~N~~~~~a~~--l~v~k~y~~~~g~~~~~~vvg~~~dv~~~~~~g~~~~~~~~ll-p~-------~~~~~~~~~~  183 (260)
T TIGR03214       115 -KWTLANAQAEDARF--FLYKKRYQPVEGLHAPELVVGNEKDIEPEPYEGMDDVILTTLL-PK-------ELAFDMNVHI  183 (260)
T ss_pred             -CEEEEECCCCCEEE--EEEEeeeEEcCCCCCCCeeecCHHHCCccccCCCCcEEEEEeC-ch-------hcCCCcEEEE
Confidence             57777776666665  57642211 111 2332111111233322   23456676665 31       1222556666


Q ss_pred             EEECCCCeEEEecCCCCeEEEEEeecceEEcC-cCceeecCccEEEEcCCCeEEEEecCCCCeEEEEE
Q 020448          212 FTLKPRAQIHQSIPETWNAFVYTIEGEGVFGT-VNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLI  278 (326)
Q Consensus       212 i~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g-~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~  278 (326)
                      ++|++|++.-+.......--+||++|...+.. .+...+++||.+.+..+..=.+.+.++++.++||.
T Consensus       184 ~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~y  251 (260)
T TIGR03214       184 LSFEPGASHPYIETHVMEHGLYVLEGKGVYNLDNNWVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLY  251 (260)
T ss_pred             EEECCCcccCCcccccceeEEEEEeceEEEEECCEEEEecCCCEEEECCCCCEEEEecCCCcEEEEEE
Confidence            89999998743333344567799999987742 23378999999999977655667766677888774

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=98.53  E-value=1.3e-05  Score=79.01  Aligned_cols=207  Identities=19%  Similarity=0.185  Sum_probs=120.3

Q ss_pred             cCCCCCCCCCCCCCCceEEEEEeeceEE--EecCCCCee--eeeCCcEEEEecCCCeEEEeeeCCCCceeEEEE------
Q 020448           85 SVSPPAGFPDHPHRGFETVTYMLQGGIT--HQDFSGHKG--TIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQL------  154 (326)
Q Consensus        85 ~~~~~~GF~~HPHrG~EtvTyvl~G~l~--H~DS~Gn~~--~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQL------  154 (326)
                      .+.+++..++|.|++.| +.||++|+++  -.|+-|..-  .|++||+-.+.+|  +.|.-.+.. +.++.+=+      
T Consensus        73 ~l~pG~~~~~HwH~~~E-~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g--~~H~~~n~~-~~~~~l~vf~~~~f  148 (367)
T TIGR03404        73 RLEPGAIRELHWHKEAE-WAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPG--IPHSLQGLD-EGCEFLLVFDDGNF  148 (367)
T ss_pred             EEcCCCCCCcccCCCce-EEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCC--CeEEEEECC-CCeEEEEEeCCccc
Confidence            46677778999999999 7999999974  344445544  4999999999876  678877653 22322110      


Q ss_pred             ----------Eec-cCCC---------------CCCCCCCccc-------------------------cCCCccceecCC
Q 020448          155 ----------WIN-LSSS---------------DKMIEPRYQE-------------------------IPSEEIKRAETD  183 (326)
Q Consensus       155 ----------Win-LP~~---------------~k~~~P~Y~~-------------------------~~~~~iP~~~~~  183 (326)
                                |+. +|.+               .+ .+-.|..                         ...++.+.....
T Consensus       149 ~~~~~~~~~~~l~~~p~~Vla~~f~l~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  227 (367)
T TIGR03404       149 SEDGTFLVTDWLAHTPKDVLAKNFGVPESAFDNLP-LKELYIFPGTVPGPLDQEAVTGPAGEVPGPFTYHLSEQKPKQVP  227 (367)
T ss_pred             CCcceeeHHHHHHhCCHHHHHHHhCCCHHHHHhcc-ccCceEEecCCCCccccccCcCCCCCCCccEEEEhhhCCceecC
Confidence                      111 1110               00 0000110                         000011111122


Q ss_pred             CeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc--C----cCceeecCccEEEE
Q 020448          184 GVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--T----VNSSAVSAHNVLVL  257 (326)
Q Consensus       184 g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g----~~~~~l~~~d~~~l  257 (326)
                      |+++|++...    .-|  ....+.+..+.|++|+....-......-+.||++|++++.  +    .+...+++||++.+
T Consensus       228 gG~~~~~~~~----~~p--~~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~i  301 (367)
T TIGR03404       228 GGTVRIADST----NFP--VSKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYV  301 (367)
T ss_pred             CceEEEEChh----hcc--CcceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEE
Confidence            3344443221    112  2234667788999999766444444557999999999774  1    11257999999999


Q ss_pred             cCCCeEEEEecCCCCeEEEEEeeccCCCceeeeCCcccCcHHHHHH
Q 020448          258 SLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQ  303 (326)
Q Consensus       258 ~~g~~l~i~a~~~~~a~~LL~~G~pl~epi~~~GpFVmnt~~ei~~  303 (326)
                      ..|..=.+++.++++++||++--.+--+-| .-..+...+..+|.+
T Consensus       302 P~g~~H~i~N~G~e~l~fL~if~s~~~~~i-~l~~~l~~~p~~vl~  346 (367)
T TIGR03404       302 PRNMGHYVENTGDETLVFLEVFKADRFADV-SLNQWLALTPPQLVA  346 (367)
T ss_pred             CCCCeEEEEECCCCCEEEEEEECCCCCcee-EHHHHHhhCCHHHHH
Confidence            988777787766678999998666644443 223333444444433

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=97.30  E-value=0.0047  Score=52.00  Aligned_cols=89  Identities=19%  Similarity=0.235  Sum_probs=62.6

Q ss_pred             CCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc---CcCceeecCccEEEEc
Q 020448          182 TDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG---TVNSSAVSAHNVLVLS  258 (326)
Q Consensus       182 ~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~---g~~~~~l~~~d~~~l~  258 (326)
                      .++..-|+++...         .....+..+.|++|++........ .-++||++|++++.   +.+...|.+||.+.+.
T Consensus        19 ~~~~~krll~~~~---------~~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~g~~~~L~aGD~i~~~   88 (125)
T PRK13290         19 GNWTSRRLLLKDD---------GMGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLATGEVHPIRPGTMYALD   88 (125)
T ss_pred             CCceEEEEEEecC---------CCCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCCCEEEEeCCCeEEEEC
Confidence            3445666665421         123466778999998665433322 46999999999874   2344789999999999


Q ss_pred             CCCeEEEEecCCCCeEEEEEeecc
Q 020448          259 LGDGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       259 ~g~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      .+..=.+.+.  +++++|.+...|
T Consensus        89 ~~~~H~~~N~--e~~~~l~v~tP~  110 (125)
T PRK13290         89 KHDRHYLRAG--EDMRLVCVFNPP  110 (125)
T ss_pred             CCCcEEEEcC--CCEEEEEEECCC
Confidence            8877777774  689999887755

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=97.18  E-value=0.00055  Score=50.41  Aligned_cols=67  Identities=24%  Similarity=0.462  Sum_probs=56.7

Q ss_pred             CCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEE
Q 020448           86 VSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLW  155 (326)
Q Consensus        86 ~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLW  155 (326)
                      +.|+...++|.|.+.+.+.||++|++.-. --|..-.+++||+-++.+|  ..|.=.|.+++++.+|-+|
T Consensus         5 ~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~~~~~~l~~Gd~~~i~~~--~~H~~~n~~~~~~~~l~V~   71 (71)
T PF07883_consen    5 LPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VDGERVELKPGDAIYIPPG--VPHQVRNPGDEPARFLVVY   71 (71)
T ss_dssp             EETTEEEEEEEESSEEEEEEEEESEEEEE-ETTEEEEEETTEEEEEETT--SEEEEEEESSSEEEEEEEE
T ss_pred             ECCCCCCCCEECCCCCEEEEEEECCEEEE-EccEEeEccCCEEEEECCC--CeEEEEECCCCCEEEEEEC
Confidence            45666678999999989999999999988 4466789999999999998  7888888888888887665

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=97.04  E-value=0.0048  Score=45.27  Aligned_cols=66  Identities=20%  Similarity=0.352  Sum_probs=49.9

Q ss_pred             EEECCCCeEEEecCCCCeEEEEEeecceEEc--CcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEE
Q 020448          212 FTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLI  278 (326)
Q Consensus       212 i~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~  278 (326)
                      +.+.+|+.......+....++||++|++++.  | +...+++||.+.+..+..-.+.+.+++++++|.+
T Consensus         3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~-~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V   70 (71)
T PF07883_consen    3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDG-ERVELKPGDAIYIPPGVPHQVRNPGDEPARFLVV   70 (71)
T ss_dssp             EEEETTEEEEEEEESSEEEEEEEEESEEEEEETT-EEEEEETTEEEEEETTSEEEEEEESSSEEEEEEE
T ss_pred             EEECCCCCCCCEECCCCCEEEEEEECCEEEEEcc-EEeEccCCEEEEECCCCeEEEEECCCCCEEEEEE
Confidence            5778888665544444448999999998884  3 2368999999999988887887766667777765

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=96.86  E-value=0.0086  Score=56.44  Aligned_cols=87  Identities=21%  Similarity=0.208  Sum_probs=67.2

Q ss_pred             CceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeE
Q 020448           59 DGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIV  138 (326)
Q Consensus        59 ~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~  138 (326)
                      ++..++.+++  .  ...+=.++.-+.+.|++-.|.|.|..+|=.-|||+|+-..+|. |..-.+++||+-||.||  +.
T Consensus       163 ~~~~~~~llp--~--~~~~~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~-g~~~~V~~GD~i~i~~~--~~  235 (260)
T TIGR03214       163 DDVILTTLLP--K--ELAFDMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLD-NNWVPVEAGDYIWMGAY--CP  235 (260)
T ss_pred             CcEEEEEeCc--h--hcCCCcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEEC-CEEEEecCCCEEEECCC--CC
Confidence            3677777872  2  2232455666888999888988888888888999999999886 77789999999999887  77


Q ss_pred             EEeeeCCCCceeEE
Q 020448          139 HSEMPAGEGVQNGL  152 (326)
Q Consensus       139 HsE~~~~~~~~~~l  152 (326)
                      |.=.|..++++++|
T Consensus       236 h~~~~~G~~~~~~l  249 (260)
T TIGR03214       236 QACYAGGRGEFRYL  249 (260)
T ss_pred             EEEEecCCCcEEEE
Confidence            87777766666654

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>smart00835 Cupin_1 Cupin

Probab=96.81  E-value=0.049  Score=46.44  Aligned_cols=102  Identities=19%  Similarity=0.268  Sum_probs=67.9

Q ss_pred             cCCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc--CcC-----ceeecCcc
Q 020448          181 ETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TVN-----SSAVSAHN  253 (326)
Q Consensus       181 ~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g~~-----~~~l~~~d  253 (326)
                      ..+++.++++.+.    .-|.-....+.+..+++++|+........+..-++||++|++.+.  +.+     ...+.+||
T Consensus         8 ~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD   83 (146)
T smart00835        8 SNEGGRLREADPT----NFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGD   83 (146)
T ss_pred             cCCCceEEEeCch----hCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCC
Confidence            4455677877542    223322335788888999999754333223357899999998773  321     25699999


Q ss_pred             EEEEcCCCeEEEEecCCCCeEEEEEeeccCCCc
Q 020448          254 VLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEP  286 (326)
Q Consensus       254 ~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl~ep  286 (326)
                      .+.+..+..-.+.+.++++++++.+.......|
T Consensus        84 ~~~ip~g~~H~~~n~~~~~~~~l~~~~~~~~~~  116 (146)
T smart00835       84 VFVVPQGHPHFQVNSGDENLEFVAFNTNDPNRR  116 (146)
T ss_pred             EEEECCCCEEEEEcCCCCCEEEEEEecCCCCce
Confidence            999998776666666567898887766543444

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=96.55  E-value=0.18  Score=46.34  Aligned_cols=152  Identities=22%  Similarity=0.302  Sum_probs=93.3

Q ss_pred             CCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCCC--CCCCCCCccc
Q 020448           94 DHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSS--DKMIEPRYQE  171 (326)
Q Consensus        94 ~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~~--~k~~~P~Y~~  171 (326)
                      +-+-.+.|++-||++|++.-. -.|..-.|++|+--+..+|+|-.  =.|.+..+.++.  ||.-+-.  +.-.+|.-..
T Consensus        77 ~e~d~~ae~~lfVv~Ge~tv~-~~G~th~l~eggyaylPpgs~~~--~~N~~~~~~rfh--w~rk~Y~~VdG~~~P~~~~  151 (264)
T COG3257          77 PEGDEGAETFLFVVSGEITVK-AEGKTHALREGGYAYLPPGSGWT--LRNAQKEDSRFH--WIRKRYQPVEGVQAPELVS  151 (264)
T ss_pred             CCCCCcceEEEEEEeeeEEEE-EcCeEEEeccCCeEEeCCCCcce--EeeccCCceEEE--EEeecceeecCccCCccee
Confidence            345559999999999998654 23666789999999999999854  445544444332  5532111  0111222221


Q ss_pred             cCCCcccee---cCCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc-CcCce
Q 020448          172 IPSEEIKRA---ETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG-TVNSS  247 (326)
Q Consensus       172 ~~~~~iP~~---~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~-g~~~~  247 (326)
                      --.++||..   ..++...+-+        .|-+..-++.+--+++++|+++-+.--.=...-+|||+|....+ +++..
T Consensus       152 ~Ne~ei~~~~m~gtdg~~attv--------~P~d~r~Dmhv~ivsFePGa~ip~aEtHvmEHGlyvLeGk~vYrLn~dwv  223 (264)
T COG3257         152 GNESEIEPSPMEGTDGVIATTV--------LPKELRFDMHVHIVSFEPGASIPYAETHVMEHGLYVLEGKGVYRLNNNWV  223 (264)
T ss_pred             cChhhCCCCCCCCCCCeEEEee--------CccccCcceEEEEEEecCCcccchhhhhhhhcceEEEecceEEeecCceE
Confidence            112223322   2344444433        34456677888888999999764432222347799999998764 33457


Q ss_pred             eecCccEEEEc
Q 020448          248 AVSAHNVLVLS  258 (326)
Q Consensus       248 ~l~~~d~~~l~  258 (326)
                      .+++||.+.+.
T Consensus       224 ~V~aGD~mwm~  234 (264)
T COG3257         224 PVEAGDYIWMG  234 (264)
T ss_pred             EeecccEEEee
Confidence            89999998875

>PRK11171 hypothetical protein; Provisional

Probab=96.21  E-value=0.037  Score=52.33  Aligned_cols=91  Identities=21%  Similarity=0.230  Sum_probs=66.5

Q ss_pred             CCCCceEEE-EecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecC
Q 020448           56 HDGDGAVVR-RAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAG  134 (326)
Q Consensus        56 ~~G~g~~v~-r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAG  134 (326)
                      ..|.|..++ |+++.. ...++  ..+..+.+.|++-++.|.|.+.|=.-|||+|+++..+. |..-.|++||+-||.+.
T Consensus       163 ~g~~g~~~~~~~~~p~-~~~~~--~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~-~~~~~l~~GD~i~~~~~  238 (266)
T PRK11171        163 PGTDGVWATTRLVDPE-DLRFD--MHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLN-NDWVEVEAGDFIWMRAY  238 (266)
T ss_pred             CCCCCeEEEEEeeCch-hcCCC--cEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEEC-CEEEEeCCCCEEEECCC
Confidence            345566555 455533 23344  46667778899889998888999999999999998874 66678999999999876


Q ss_pred             CCeEEEeeeCCCCceeEE
Q 020448          135 RGIVHSEMPAGEGVQNGL  152 (326)
Q Consensus       135 sGI~HsE~~~~~~~~~~l  152 (326)
                        ..|.=.|..+++++++
T Consensus       239 --~~h~~~N~g~~~~~yl  254 (266)
T PRK11171        239 --CPQACYAGGPGPFRYL  254 (266)
T ss_pred             --CCEEEECCCCCcEEEE
Confidence              5666666666666553

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=96.15  E-value=0.059  Score=47.77  Aligned_cols=74  Identities=18%  Similarity=0.104  Sum_probs=50.4

Q ss_pred             cEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeec
Q 020448          207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQ  281 (326)
Q Consensus       207 ~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~  281 (326)
                      +.++...+++|+...-.......-++||++|++.+  ++ +...|.+||.+.+..+..=.+.+.+++++++|++...
T Consensus       107 ~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~~-~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~p  182 (185)
T PRK09943        107 LAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTING-QDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHTP  182 (185)
T ss_pred             eEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEECC-EEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeCC
Confidence            34455677888753212222335899999999877  44 2378999999999866544455555678999988653

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=95.96  E-value=0.057  Score=45.44  Aligned_cols=89  Identities=15%  Similarity=0.106  Sum_probs=60.8

Q ss_pred             ceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecC-CCCeeeeeCCcEEEEecCCCeE
Q 020448           60 GAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDF-SGHKGTIHTGDVQWMTAGRGIV  138 (326)
Q Consensus        60 g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS-~Gn~~~i~~GdvQwMtAGsGI~  138 (326)
                      +-..+|++.......+    .+-.+.+.|+...+.|-|...| +.|||+|+++-.+- -|....|+|||+-.+.++  ..
T Consensus        20 ~~~~krll~~~~~~~~----~~~~~~l~pG~~~~~h~h~~~E-~~yVL~G~~~~~~i~~g~~~~L~aGD~i~~~~~--~~   92 (125)
T PRK13290         20 NWTSRRLLLKDDGMGF----SFHETTIYAGTETHLHYKNHLE-AVYCIEGEGEVEDLATGEVHPIRPGTMYALDKH--DR   92 (125)
T ss_pred             CceEEEEEEecCCCCE----EEEEEEECCCCcccceeCCCEE-EEEEEeCEEEEEEcCCCEEEEeCCCeEEEECCC--Cc
Confidence            3445665543322222    2233456777777888776655 99999999999843 377889999999999987  66


Q ss_pred             EEeeeCCCCceeEEEEEeccC
Q 020448          139 HSEMPAGEGVQNGLQLWINLS  159 (326)
Q Consensus       139 HsE~~~~~~~~~~lQLWinLP  159 (326)
                      |+=.|.  +++++  ||+-.|
T Consensus        93 H~~~N~--e~~~~--l~v~tP  109 (125)
T PRK13290         93 HYLRAG--EDMRL--VCVFNP  109 (125)
T ss_pred             EEEEcC--CCEEE--EEEECC
Confidence            777775  55665  787444

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=95.90  E-value=0.0096  Score=54.59  Aligned_cols=62  Identities=26%  Similarity=0.461  Sum_probs=44.9

Q ss_pred             cCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEE
Q 020448           85 SVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQL  154 (326)
Q Consensus        85 ~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQL  154 (326)
                      ++.|+..+|.|.|.|.| +|+||+|.+.  |..   +.+.+||+-+..+|  ..|+=....++.+-.|=+
T Consensus       133 ~i~pG~~~p~H~H~G~E-~tlVLeG~f~--de~---g~y~~Gd~i~~p~~--~~H~p~a~~~~~Cicl~v  194 (215)
T TIGR02451       133 YIEAGQSIPQHTHKGFE-LTLVLHGAFS--DET---GVYGVGDFEEADGS--VQHQPRTVSGGDCLCLAV  194 (215)
T ss_pred             EECCCCccCCCcCCCcE-EEEEEEEEEE--cCC---CccCCCeEEECCCC--CCcCcccCCCCCeEEEEE
Confidence            46788899999999999 9999999985  333   46899987776666  456655444444544433

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=95.50  E-value=0.029  Score=46.82  Aligned_cols=76  Identities=17%  Similarity=0.263  Sum_probs=58.5

Q ss_pred             CCceEEeecc-cCCCCCCCCCCCCCCceEEEEEeeceEE--EecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeE
Q 020448           75 LDPFLMLDEF-SVSPPAGFPDHPHRGFETVTYMLQGGIT--HQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNG  151 (326)
Q Consensus        75 ~dPfl~lD~~-~~~~~~GF~~HPHrG~EtvTyvl~G~l~--H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~  151 (326)
                      .|.-.++-+. ++.|++--..|-|.+.||+-|+|+|+..  .-+-+-...+.+|||.-+.-+|  +-|.+.|.+++++..
T Consensus        41 vGas~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpg--VPHqp~N~S~ep~s~  118 (142)
T COG4101          41 VGASGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPG--VPHQPANLSTEPLSA  118 (142)
T ss_pred             cccceeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCC--CCCcccccCCCCeEE
Confidence            3444444443 4677777889999999999999999854  4466666789999999999986  889999887776655


Q ss_pred             E
Q 020448          152 L  152 (326)
Q Consensus       152 l  152 (326)
                      +
T Consensus       119 v  119 (142)
T COG4101         119 V  119 (142)
T ss_pred             E
Confidence            4

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=95.45  E-value=0.075  Score=44.26  Aligned_cols=74  Identities=27%  Similarity=0.276  Sum_probs=59.8

Q ss_pred             EeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEe
Q 020448           80 MLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWI  156 (326)
Q Consensus        80 ~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWi  156 (326)
                      ..-.+.+.+++..+.|-|...+...|||+|++...=. |....+++||+-++-+|  +.|.=.+..+..+..|-+.-
T Consensus        44 ~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g~~~~l~~Gd~i~ip~g--~~H~~~a~~~~~~~~l~v~~  117 (131)
T COG1917          44 SVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-GEKKELKAGDVIIIPPG--VVHGLKAVEDEPMVLLLVFP  117 (131)
T ss_pred             EEEEEEECCCcccccccCCCcceEEEEEecEEEEEec-CCceEecCCCEEEECCC--CeeeeccCCCCceeEEEEee
Confidence            3344567888889999999777888999999999888 99999999999998876  88887776655466777764

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=95.39  E-value=0.013  Score=46.03  Aligned_cols=73  Identities=25%  Similarity=0.384  Sum_probs=51.6

Q ss_pred             CceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeE
Q 020448           59 DGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIV  138 (326)
Q Consensus        59 ~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~  138 (326)
                      .|+.++.+....  ...+..+.|=  ++.|++.+|.|.|.|.|-+ |||+|++.+.|     +...+|+.-+..+|+  .
T Consensus         8 ~Gv~~~~L~~~~--~~~g~~~~L~--r~~pG~~~p~H~H~g~ee~-~VLeG~~~d~~-----~~~~~G~~~~~p~g~--~   75 (91)
T PF12973_consen    8 PGVSVKPLHRDE--GETGERVSLL--RLEPGASLPRHRHPGGEEI-LVLEGELSDGD-----GRYGAGDWLRLPPGS--S   75 (91)
T ss_dssp             TTEEEEEEEECS--SSTTEEEEEE--EE-TTEEEEEEEESS-EEE-EEEECEEEETT-----CEEETTEEEEE-TTE--E
T ss_pred             CCEEEEEeccCC--CcccCEEEEE--EECCCCCcCccCCCCcEEE-EEEEEEEEECC-----ccCCCCeEEEeCCCC--c
Confidence            477777776433  1234454443  3567788999999998887 99999999755     478999999999886  6


Q ss_pred             EEeee
Q 020448          139 HSEMP  143 (326)
Q Consensus       139 HsE~~  143 (326)
                      |+-.-
T Consensus        76 h~~~s   80 (91)
T PF12973_consen   76 HTPRS   80 (91)
T ss_dssp             EEEEE
T ss_pred             cccCc
Confidence            77663

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=95.31  E-value=0.086  Score=48.42  Aligned_cols=68  Identities=21%  Similarity=0.270  Sum_probs=49.2

Q ss_pred             EEEECCCCeEEEe-cCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          211 DFTLKPRAQIHQS-IPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       211 di~L~~g~~~~~~-~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      -+++.++.--.-+ ..++.++++||++|++.+  +|+ .+.|.+|+-+.+..|+.-++++.+.+++||-++-
T Consensus        65 ive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~-th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~r  135 (264)
T COG3257          65 IVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGK-THALREGGYAYLPPGSGWTLRNAQKEDSRFHWIR  135 (264)
T ss_pred             eEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCe-EEEeccCCeEEeCCCCcceEeeccCCceEEEEEe
Confidence            3566444322222 234567999999999877  452 3789999999999999989886556789988864

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=95.30  E-value=0.21  Score=39.09  Aligned_cols=66  Identities=17%  Similarity=0.141  Sum_probs=48.0

Q ss_pred             EEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          208 MFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       208 ~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      ...-+++++|+.+-.... .....+|||+|++..++   ..+.+||.+....+..-++.+  ++++.+++=.
T Consensus        25 ~~~L~r~~pG~~~p~H~H-~g~ee~~VLeG~~~d~~---~~~~~G~~~~~p~g~~h~~~s--~~gc~~~vkt   90 (91)
T PF12973_consen   25 RVSLLRLEPGASLPRHRH-PGGEEILVLEGELSDGD---GRYGAGDWLRLPPGSSHTPRS--DEGCLILVKT   90 (91)
T ss_dssp             EEEEEEE-TTEEEEEEEE-SS-EEEEEEECEEEETT---CEEETTEEEEE-TTEEEEEEE--SSCEEEEEEE
T ss_pred             EEEEEEECCCCCcCccCC-CCcEEEEEEEEEEEECC---ccCCCCeEEEeCCCCccccCc--CCCEEEEEEe
Confidence            455578899987754322 22478899999999887   788999999999888888776  3678777643

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=94.76  E-value=0.19  Score=49.83  Aligned_cols=75  Identities=20%  Similarity=0.239  Sum_probs=61.9

Q ss_pred             EEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEe--cCCCC--eeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEE
Q 020448           79 LMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQ--DFSGH--KGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQL  154 (326)
Q Consensus        79 l~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~--DS~Gn--~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQL  154 (326)
                      +-+-+..+.|++..++|-|.+-+=+-||++|+.+-.  |+-|+  ...+++||+-..-.  |..|.=.|..++++++|-+
T Consensus       245 ~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~--g~~H~i~N~G~e~l~fL~i  322 (367)
T TIGR03404       245 IAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPR--NMGHYVENTGDETLVFLEV  322 (367)
T ss_pred             EEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECC--CCeEEEEECCCCCEEEEEE
Confidence            445666788888999999999999999999987655  66665  35799999988887  5889999988788999887


Q ss_pred             E
Q 020448          155 W  155 (326)
Q Consensus       155 W  155 (326)
                      |
T Consensus       323 f  323 (367)
T TIGR03404       323 F  323 (367)
T ss_pred             E
Confidence            7

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=94.20  E-value=1.7  Score=36.82  Aligned_cols=87  Identities=22%  Similarity=0.266  Sum_probs=57.4

Q ss_pred             ceecCCCeEEEEEeCCCCCCcCc-ccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc----Cc-------C
Q 020448          178 KRAETDGVEVRIIAGESMGVRSP-VYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG----TV-------N  245 (326)
Q Consensus       178 P~~~~~g~~~rViaG~~~g~~sp-~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~----g~-------~  245 (326)
                      |.+..+++.++.+.+.    +-| +.......+..+.+++|+-..--.. .-..++||++|++++.    +.       .
T Consensus         8 ~~~~~~~G~~~~~~~~----~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~   82 (144)
T PF00190_consen    8 PRVSNEGGRIREADSE----DFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDF   82 (144)
T ss_dssp             EEEEETTEEEEEESTT----TSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEE
T ss_pred             CcccCCCEEEEEEChh----hCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceee
Confidence            4455567788888654    234 2233445555566799886654334 5568999999999852    21       1


Q ss_pred             cee--ecCccEEEEcCCCeEEEEecC
Q 020448          246 SSA--VSAHNVLVLSLGDGLSAWNRS  269 (326)
Q Consensus       246 ~~~--l~~~d~~~l~~g~~l~i~a~~  269 (326)
                      .+.  +++||+..+..|....+.+.+
T Consensus        83 ~~~v~l~~Gdv~~vP~G~~h~~~n~~  108 (144)
T PF00190_consen   83 SQKVRLKAGDVFVVPAGHPHWIINDG  108 (144)
T ss_dssp             EEEEEEETTEEEEE-TT-EEEEEECS
T ss_pred             eceeeeecccceeeccceeEEEEcCC
Confidence            134  999999999999888888864

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>smart00835 Cupin_1 Cupin

Probab=94.19  E-value=0.32  Score=41.38  Aligned_cols=74  Identities=19%  Similarity=0.293  Sum_probs=55.1

Q ss_pred             EEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEe--cCCCC---eeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEE
Q 020448           79 LMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQ--DFSGH---KGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQ  153 (326)
Q Consensus        79 l~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~--DS~Gn---~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQ  153 (326)
                      +.+-...+.|+..++.|-|.+-+-+-||++|++.-.  |..|+   ...+++||+-.+.+|  +.|...+..++++.++ 
T Consensus        30 ~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g--~~H~~~n~~~~~~~~l-  106 (146)
T smart00835       30 ISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQG--HPHFQVNSGDENLEFV-  106 (146)
T ss_pred             eEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCC--CEEEEEcCCCCCEEEE-
Confidence            334444567777788999986777889999996543  32222   567999999999888  7899998777788776 


Q ss_pred             EEe
Q 020448          154 LWI  156 (326)
Q Consensus       154 LWi  156 (326)
                       |+
T Consensus       107 -~~  108 (146)
T smart00835      107 -AF  108 (146)
T ss_pred             -EE
Confidence             55

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=93.51  E-value=0.19  Score=48.04  Aligned_cols=68  Identities=18%  Similarity=0.189  Sum_probs=48.3

Q ss_pred             CCCCCCceEEeeccc------CCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEee
Q 020448           71 DLRSLDPFLMLDEFS------VSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEM  142 (326)
Q Consensus        71 ~~~~~dPfl~lD~~~------~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~  142 (326)
                      ....+||+...-.-.      -.+...+++|-|..+|++ |+++|.+...-. |..-.+.|||+-|+.+|  +.|+-.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~HwH~e~Ei~-yv~~G~~~~~i~-g~~~~l~~Gd~ili~s~--~~H~~~   85 (302)
T PRK10371         12 EKQTRSPLSLYSEYQRLEIEFRPPHIMPTSHWHGQVEVN-VPFDGDVEYLIN-NEKVQINQGHITLFWAC--TPHQLT   85 (302)
T ss_pred             CCCCCCCcccccCCceeEEEeeCCCCCCCCCccccEEEE-EecCCcEEEEEC-CEEEEEcCCcEEEEecC--Cccccc
Confidence            344556665543321      123346789999999998 999999876554 77889999999999655  777643

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=93.43  E-value=0.58  Score=38.87  Aligned_cols=63  Identities=19%  Similarity=0.196  Sum_probs=46.5

Q ss_pred             ccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc-CcCceeecCccEEEEcCCCeEEEEec
Q 020448          206 PTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG-TVNSSAVSAHNVLVLSLGDGLSAWNR  268 (326)
Q Consensus       206 ~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~-g~~~~~l~~~d~~~l~~g~~l~i~a~  268 (326)
                      .+.+..+.+++|++...-..+.+..++||++|.+++. +.+...+.+||.+.+..+..=.+.|.
T Consensus        42 ~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~~~~l~~Gd~i~ip~g~~H~~~a~  105 (131)
T COG1917          42 NLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEGEKKELKAGDVIIIPPGVVHGLKAV  105 (131)
T ss_pred             eEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecCCceEecCCCEEEECCCCeeeeccC
Confidence            4566678999999876555445679999999998874 12337899999999987655445554

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=93.34  E-value=0.49  Score=48.29  Aligned_cols=77  Identities=12%  Similarity=0.146  Sum_probs=55.7

Q ss_pred             CccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448          205 TPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       205 ~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      ....+..+.+++|++..........-..||++|++++  +| +...+.+||.+.+..+..=.+.+.+++++++|.+...+
T Consensus       374 ~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg-~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~~~  452 (468)
T TIGR01479       374 DRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGD-ETLLLTENESTYIPLGVIHRLENPGKIPLELIEVQSGS  452 (468)
T ss_pred             CCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECC-EEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCC
Confidence            3566777899999965433333333445999999877  45 23789999999999887777877667789988776543

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=93.27  E-value=0.88  Score=37.98  Aligned_cols=76  Identities=18%  Similarity=0.278  Sum_probs=55.3

Q ss_pred             ccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448          206 PTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       206 ~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      ...+..+.+++|+.+.+.....+.-+.||++|++.+  ++ +...|.+||.+.+..|..=.+.+.+..+..++-+...+
T Consensus        35 ~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~-~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p~  112 (127)
T COG0662          35 RYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGG-EEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPP  112 (127)
T ss_pred             cEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECC-EEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecCC
Confidence            345667788999987766666667899999998877  44 23679999999999888777777544445555554433

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=92.82  E-value=0.28  Score=37.18  Aligned_cols=48  Identities=29%  Similarity=0.419  Sum_probs=37.4

Q ss_pred             CCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecC-CCeEEEe
Q 020448           92 FPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAG-RGIVHSE  141 (326)
Q Consensus        92 F~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAG-sGI~HsE  141 (326)
                      |+.+... .|++ |||+|++.-.|..|....++|||+-.+.+| +|..+..
T Consensus        19 ~~~~~~~-~E~~-~vleG~v~it~~~G~~~~~~aGD~~~~p~G~~~~w~v~   67 (74)
T PF05899_consen   19 FPWPYPE-DEFF-YVLEGEVTITDEDGETVTFKAGDAFFLPKGWTGTWEVR   67 (74)
T ss_dssp             EEEEESS-EEEE-EEEEEEEEEEETTTEEEEEETTEEEEE-TTEEEEEEEE
T ss_pred             eEeeCCC-CEEE-EEEEeEEEEEECCCCEEEEcCCcEEEECCCCEEEEEEC
Confidence            4443333 7777 999999999999999999999999999999 4554443

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=92.61  E-value=1.1  Score=35.17  Aligned_cols=66  Identities=15%  Similarity=0.201  Sum_probs=42.7

Q ss_pred             EEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEE
Q 020448          212 FTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLI  278 (326)
Q Consensus       212 i~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~  278 (326)
                      +.|.++++-...--.......||++|.++|  ++ ....+.+|+...+..|..-.|++.++++|++++.
T Consensus        17 l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~-~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF~   84 (85)
T PF11699_consen   17 LELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHE-TSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFFV   84 (85)
T ss_dssp             EEE-TCCCEEEEE--SEEEEEEEEESEEEEEETT-EEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred             EEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcC-cEEEEeCCCEEEECCCCEEEEEECCCCcEEEEEe
Confidence            467777776544333334778999998877  44 2267899999999999999999877777877653

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=92.48  E-value=0.58  Score=40.90  Aligned_cols=72  Identities=22%  Similarity=0.246  Sum_probs=57.6

Q ss_pred             cccCCCCC-CCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEE
Q 020448           83 EFSVSPPA-GFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLW  155 (326)
Q Consensus        83 ~~~~~~~~-GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLW  155 (326)
                      ...+.|+. .-..|-|.--|=+.|||+|+..-+-. |....|+|||+-=..||.|..|.=.|.++..++.|-+=
T Consensus        46 ~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d-~~e~~lrpGD~~gFpAG~~~aHhliN~s~~~~~yL~vG  118 (161)
T COG3837          46 LEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRED-GGETRLRPGDSAGFPAGVGNAHHLINRSDVILRYLEVG  118 (161)
T ss_pred             eEEeCCCCccccccccccCceEEEEEcCceEEEEC-CeeEEecCCceeeccCCCcceeEEeecCCceEEEEEec
Confidence            33456652 45689999999999999999887654 34578999999999999999999999877777766543

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=92.45  E-value=0.67  Score=47.55  Aligned_cols=77  Identities=10%  Similarity=0.139  Sum_probs=57.3

Q ss_pred             ccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEee
Q 020448          203 TRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAG  280 (326)
Q Consensus       203 ~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G  280 (326)
                      ......+..+.+++|++..........=+.||++|++++  +| +...|.+||.+.+..+..=.+.+.+++++++|.+..
T Consensus       381 ~g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg-~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~  459 (478)
T PRK15460        381 AGDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDG-DIKLLGENESIYIPLGATHCLENPGKIPLDLIEVRS  459 (478)
T ss_pred             CCCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECC-EEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEc
Confidence            344567788899999976554444455788899998876  45 237899999999998877677776667888776643

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=92.13  E-value=1.5  Score=38.71  Aligned_cols=61  Identities=21%  Similarity=0.225  Sum_probs=44.4

Q ss_pred             CCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccC
Q 020448           93 PDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLS  159 (326)
Q Consensus        93 ~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP  159 (326)
                      +.|.|.+.|++ ||++|+++-.= -|..-.|++||.-++.++  +.|.=.|..+.+++.+  |+.-|
T Consensus       122 ~~~~h~~~E~~-~Vl~G~~~~~~-~~~~~~l~~Gd~~~~~~~--~~H~~~n~~~~~~~~l--~~~~p  182 (185)
T PRK09943        122 ERIKHQGEEIG-TVLEGEIVLTI-NGQDYHLVAGQSYAINTG--IPHSFSNTSAGICRII--SAHTP  182 (185)
T ss_pred             cccccCCcEEE-EEEEeEEEEEE-CCEEEEecCCCEEEEcCC--CCeeeeCCCCCCeEEE--EEeCC
Confidence            35667776555 89999998652 345678999999999996  7898777666666554  45444

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=92.05  E-value=0.88  Score=46.42  Aligned_cols=71  Identities=15%  Similarity=0.172  Sum_probs=51.7

Q ss_pred             cccCCCCCCCC--CCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCC
Q 020448           83 EFSVSPPAGFP--DHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSS  160 (326)
Q Consensus        83 ~~~~~~~~GF~--~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~  160 (326)
                      ...+.|+..-+  .|+|++ |+. ||++|+++-.-. |....|++||.-...+|.  .|+=.|.++++++.  ||+..|.
T Consensus       380 ~~~i~PG~~~~~h~H~~~~-E~~-~Vl~G~~~v~~d-g~~~~l~~GDsi~ip~~~--~H~~~N~g~~~~~~--i~v~~~~  452 (468)
T TIGR01479       380 RITVKPGEKLSLQMHHHRA-EHW-IVVSGTARVTIG-DETLLLTENESTYIPLGV--IHRLENPGKIPLEL--IEVQSGS  452 (468)
T ss_pred             EEEECCCCccCccccCCCc-eEE-EEEeeEEEEEEC-CEEEEecCCCEEEECCCC--cEEEEcCCCCCEEE--EEEEcCC
Confidence            34567776555  466654 766 999999877522 556789999999998875  89988887777777  5664443

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=92.02  E-value=0.43  Score=38.23  Aligned_cols=65  Identities=29%  Similarity=0.454  Sum_probs=41.5

Q ss_pred             CCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccC
Q 020448           89 PAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLS  159 (326)
Q Consensus        89 ~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP  159 (326)
                      ...+++|-|..+|++ |+++|+..+.- -|..-.++|||+-|+.+|.  .|+=...+++  ..-..||.++
T Consensus        13 ~~~~~~h~h~~~~i~-~v~~G~~~~~~-~~~~~~l~~g~~~li~p~~--~H~~~~~~~~--~~~~~~i~~~   77 (136)
T PF02311_consen   13 NFEFPPHWHDFYEII-YVLSGEGTLHI-DGQEYPLKPGDLFLIPPGQ--PHSYYPDSNE--PWEYYWIYFS   77 (136)
T ss_dssp             T-SEEEETT-SEEEE-EEEEE-EEEEE-TTEEEEE-TT-EEEE-TTS---EEEEE-TTS--EEEEEEEEE-
T ss_pred             CCccCCEECCCEEEE-EEeCCEEEEEE-CCEEEEEECCEEEEecCCc--cEEEecCCCC--CEEEEEEEEC
Confidence            345678999999886 99999999843 3455789999999999885  8887766555  4455566544

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=91.96  E-value=0.66  Score=40.58  Aligned_cols=69  Identities=20%  Similarity=0.253  Sum_probs=46.4

Q ss_pred             EEEECCCCeEEEecCCC-CeEEEEEeecceEE--cCcCceeecCccEEEEcCCC--eEEEEecCCCCeEEEEEee
Q 020448          211 DFTLKPRAQIHQSIPET-WNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGD--GLSAWNRSSKQLRFVLIAG  280 (326)
Q Consensus       211 di~L~~g~~~~~~~p~~-~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~--~l~i~a~~~~~a~~LL~~G  280 (326)
                      ...|+||.+-.+.--.. ..-|+|||+|++++  ++. ...|.+||.+.|..|.  .=.|.+.++..+++|.++-
T Consensus        46 ~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~-e~~lrpGD~~gFpAG~~~aHhliN~s~~~~~yL~vG~  119 (161)
T COG3837          46 LEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGG-ETRLRPGDSAGFPAGVGNAHHLINRSDVILRYLEVGT  119 (161)
T ss_pred             eEEeCCCCccccccccccCceEEEEEcCceEEEECCe-eEEecCCceeeccCCCcceeEEeecCCceEEEEEecc
Confidence            34778998766443322 24799999998776  442 2789999999999653  3456666555555555554

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=91.43  E-value=1.4  Score=38.25  Aligned_cols=69  Identities=9%  Similarity=0.114  Sum_probs=54.0

Q ss_pred             cEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEE
Q 020448          207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFV  276 (326)
Q Consensus       207 ~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~L  276 (326)
                      ..+-.+.+.||.++++.....+.-.-+|++|.+.|  ++ +...+.+||.+.+..|..=++++.+..+.+|+
T Consensus        63 ~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~-~~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~I  133 (151)
T PF01050_consen   63 YKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDD-EEFTLKEGDSVYIPRGAKHRIENPGKTPLEII  133 (151)
T ss_pred             EEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECC-EEEEEcCCCEEEECCCCEEEEECCCCcCcEEE
Confidence            45567789999999999888888899999998777  44 23689999999999888888887543444444

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB)

Probab=90.66  E-value=0.66  Score=43.89  Aligned_cols=68  Identities=10%  Similarity=0.191  Sum_probs=49.3

Q ss_pred             EEECCCCeEEEecCCCCeEEEEEeecceEEc--CcCceeecCc--------cEEEEcCCCeEEEEecCCCCeEEEEEeec
Q 020448          212 FTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TVNSSAVSAH--------NVLVLSLGDGLSAWNRSSKQLRFVLIAGQ  281 (326)
Q Consensus       212 i~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g~~~~~l~~~--------d~~~l~~g~~l~i~a~~~~~a~~LL~~G~  281 (326)
                      ++|++|+++++.+ .++...+..++|.++|.  |.+...+..+        |.+.+..|..++|+|.  ++++|.+.+..
T Consensus        32 l~L~~g~~~~~~~-~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~--~~ae~~~~sap  108 (261)
T PF04962_consen   32 LRLEAGESLEFEL-ERRELGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALYVPRGTKVVIFAS--TDAEFAVCSAP  108 (261)
T ss_dssp             EEEECCHCCCCCC-CSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEES--STEEEEEEEEE
T ss_pred             EEecCCCEEeccC-CCcEEEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEEeCCCCeEEEEEc--CCCEEEEEccc
Confidence            5889999888774 35778888999998884  3223567777        9999999999999994  57999988765


Q ss_pred             c
Q 020448          282 P  282 (326)
Q Consensus       282 p  282 (326)
                      -
T Consensus       109 a  109 (261)
T PF04962_consen  109 A  109 (261)
T ss_dssp             -
T ss_pred             c
Confidence            4

KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=90.43  E-value=1.6  Score=38.09  Aligned_cols=63  Identities=14%  Similarity=0.290  Sum_probs=43.5

Q ss_pred             EEEECCCCeEEEecCCCCeEEEEEeecceEEc--CcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          211 DFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       211 di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      ..++++ +++.+.+  .+.=+-||++|++.|.  | +....++||.+.|..|..|++.+.  +.++++.+.
T Consensus        81 f~~le~-~~f~wtl--~YDEi~~VlEG~L~i~~~G-~~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Yv~  145 (152)
T PF06249_consen   81 FMELEK-TSFPWTL--TYDEIKYVLEGTLEISIDG-QTVTAKPGDVIFIPKGSTITFSTP--DYARFFYVT  145 (152)
T ss_dssp             EEEEEE-EEEEEE---SSEEEEEEEEEEEEEEETT-EEEEEETT-EEEE-TT-EEEEEEE--EEEEEEEEE
T ss_pred             EEEEeC-CCccEEe--ecceEEEEEEeEEEEEECC-EEEEEcCCcEEEECCCCEEEEecC--CCEEEEEEE
Confidence            345554 4666666  4678899999998884  3 125678999999999999999874  468877765

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=89.87  E-value=0.9  Score=39.59  Aligned_cols=48  Identities=15%  Similarity=0.292  Sum_probs=38.1

Q ss_pred             eEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          229 NAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       229 ~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      .-.-|||+|.+.|  +|+. ...++||.+.+..|..|+|...  ..|+||++.
T Consensus       119 De~d~VlEGrL~V~~~g~t-v~a~aGDvifiPKgssIefst~--gea~flyvt  168 (176)
T COG4766         119 DEIDYVLEGRLHVRIDGRT-VIAGAGDVIFIPKGSSIEFSTT--GEAKFLYVT  168 (176)
T ss_pred             cceeEEEeeeEEEEEcCCe-EecCCCcEEEecCCCeEEEecc--ceEEEEEEE
Confidence            3467999999877  3422 5678999999999999999875  359999886

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=89.68  E-value=4.6  Score=33.60  Aligned_cols=73  Identities=19%  Similarity=0.209  Sum_probs=54.9

Q ss_pred             eecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEe
Q 020448           81 LDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWI  156 (326)
Q Consensus        81 lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWi  156 (326)
                      +.+..+.|+..+++|.|...+=+=||++|+..=..- |....|++||+-+.-||  ..|.=.|....++.++=++.
T Consensus        38 ~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~-~~~~~v~~gd~~~iP~g--~~H~~~N~G~~~L~liei~~  110 (127)
T COG0662          38 IARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG-GEEVEVKAGDSVYIPAG--TPHRVRNTGKIPLVLIEVQS  110 (127)
T ss_pred             EEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC-CEEEEecCCCEEEECCC--CcEEEEcCCCcceEEEEEec
Confidence            344455666666666666677788999998543333 77889999999988876  78999998778888888875

>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12

Probab=88.92  E-value=0.6  Score=41.77  Aligned_cols=51  Identities=20%  Similarity=0.315  Sum_probs=34.8

Q ss_pred             CCCCeEEEEEeecceEEcCc-CceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          225 PETWNAFVYTIEGEGVFGTV-NSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       225 p~~~~~~lyVl~G~~~i~g~-~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      ++....++|+++|++.+... +...|.++|.+.+++.+.+.++.    ++++|++.
T Consensus       132 ~~~~~~l~~~~~G~~~i~~~~~~~~L~~~d~l~~~~~~~~~l~~----~g~ll~v~  183 (184)
T PF05962_consen  132 PAASTVLVYVLEGAWSITEGGNCISLSAGDLLLIDDEEDLPLTG----DGQLLWVS  183 (184)
T ss_dssp             E--SEEEEEESSS-EEECCCEEEEEE-TT-EEEEESEECEEEEE----ECCEEEEE
T ss_pred             CCCCEEEEEEeeCcEEEecCCCceEcCCCCEEEEeCCCceEecC----CeeEEEEe
Confidence            56777899999999999432 23789999999999877777765    45677653

HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=88.71  E-value=9.1  Score=37.59  Aligned_cols=60  Identities=20%  Similarity=0.346  Sum_probs=40.4

Q ss_pred             CCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCc
Q 020448           86 VSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGV  148 (326)
Q Consensus        86 ~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~  148 (326)
                      +.|+.--++|-|... .|-+|++|+-..-==-|.+-.+++||+-..-.  +-.|+=.|.++.+
T Consensus        88 l~pGe~~~~HRht~s-Al~~vveG~G~~t~V~g~~~~~~~gD~~~tP~--w~wH~H~n~~d~~  147 (335)
T TIGR02272        88 ILPGEVAPSHRHTQS-ALRFIVEGKGAFTAVDGERTTMHPGDFIITPS--WTWHDHGNPGDEP  147 (335)
T ss_pred             eCCCCCCCccccccc-eEEEEEEcCceEEEECCEEEeeeCCCEEEeCC--CeeEecccCCCCc
Confidence            355555567777754 88899998743211235567899999977744  5888877765555

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=88.67  E-value=3.4  Score=34.74  Aligned_cols=79  Identities=19%  Similarity=0.237  Sum_probs=54.4

Q ss_pred             CccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCc--eeecCccEEEEcCCCe-EEEEecCCCCeEEEEEe
Q 020448          205 TPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNS--SAVSAHNVLVLSLGDG-LSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       205 ~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~--~~l~~~d~~~l~~g~~-l~i~a~~~~~a~~LL~~  279 (326)
                      +.+++--+++.+|++..--+..++...+||++|++..  ++.-+  ..+.+||+..+..+-. ....+ |++.+-.++.-
T Consensus        44 s~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVPHqp~N~-S~ep~s~vIaR  122 (142)
T COG4101          44 SGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVPHQPANL-STEPLSAVIAR  122 (142)
T ss_pred             ceeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCCCccccc-CCCCeEEEEEc
Confidence            4566667789999988877888899999999999877  32111  3578999999985521 22222 23566666666


Q ss_pred             eccCC
Q 020448          280 GQPLN  284 (326)
Q Consensus       280 G~pl~  284 (326)
                      .+|-+
T Consensus       123 sDp~~  127 (142)
T COG4101         123 SDPNP  127 (142)
T ss_pred             cCCCC
Confidence            66653

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=88.01  E-value=2.1  Score=39.18  Aligned_cols=73  Identities=10%  Similarity=0.013  Sum_probs=50.6

Q ss_pred             cEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeeccC
Q 020448          207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPL  283 (326)
Q Consensus       207 ~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl  283 (326)
                      ..+.-+++++|+.+-.-...+.. +.+|++|++.-++   ..+.+||.+.++.+..-+..+.+++++-+|.+.-.|+
T Consensus       127 ~~v~Ll~i~pG~~~p~H~H~G~E-~tlVLeG~f~de~---g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~dapl  199 (215)
T TIGR02451       127 ARVRLLYIEAGQSIPQHTHKGFE-LTLVLHGAFSDET---GVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVLDAPL  199 (215)
T ss_pred             cEEEEEEECCCCccCCCcCCCcE-EEEEEEEEEEcCC---CccCCCeEEECCCCCCcCcccCCCCCeEEEEEecCCc
Confidence            45555688999976544344444 6799999987544   6899999999998877777775444566555554454

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=85.80  E-value=2  Score=32.46  Aligned_cols=51  Identities=20%  Similarity=0.210  Sum_probs=33.9

Q ss_pred             ECCCCeEEEecCCCCeEEEEEeecceEEcCcC--ceeecCccEEEEcCCCeEEEEe
Q 020448          214 LKPRAQIHQSIPETWNAFVYTIEGEGVFGTVN--SSAVSAHNVLVLSLGDGLSAWN  267 (326)
Q Consensus       214 L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~--~~~l~~~d~~~l~~g~~l~i~a  267 (326)
                      -++|. +....+  ..-++|||+|+++|-+.+  ...+.+||++.|..|...+.+.
T Consensus        14 ~~pg~-~~~~~~--~~E~~~vleG~v~it~~~G~~~~~~aGD~~~~p~G~~~~w~v   66 (74)
T PF05899_consen   14 CTPGK-FPWPYP--EDEFFYVLEGEVTITDEDGETVTFKAGDAFFLPKGWTGTWEV   66 (74)
T ss_dssp             EECEE-EEEEES--SEEEEEEEEEEEEEEETTTEEEEEETTEEEEE-TTEEEEEEE
T ss_pred             ECCce-eEeeCC--CCEEEEEEEeEEEEEECCCCEEEEcCCcEEEECCCCEEEEEE
Confidence            35543 333333  377889999999995422  2678999999998876655544

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=85.71  E-value=15  Score=34.66  Aligned_cols=74  Identities=24%  Similarity=0.291  Sum_probs=37.7

Q ss_pred             CceEEEEecCCCCCCCCCceEEeecccCCCCCCC--CCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCC
Q 020448           59 DGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGF--PDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRG  136 (326)
Q Consensus        59 ~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF--~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsG  136 (326)
                      .+...+++.+.+.  .-+|+.++=.|    ++||  |+|-|. ...--||++|.+..-|---...-|.+|..-++-||  
T Consensus        20 ~~~~~~~L~gd~~--~~g~~~~~vkf----~~g~~~pph~H~-~~~~~~Vi~G~~~~~~~~a~~~~l~~Gsy~~~PaG--   90 (251)
T PF14499_consen   20 KGPGAAVLWGDPT--KDGPSGMRVKF----PAGFSSPPHIHN-ADYRGTVISGELHNGDPKAAAMWLPAGSYWFQPAG--   90 (251)
T ss_dssp             S--EEEEEEEE----TTS-EEEEEEE-----TT-EE--BEES-S-EEEEEEESEEEETTEE-----E-TTEEEEE-TT--
T ss_pred             CCcceeeeecCcc--cCCcceEEEEc----CCCccCCCccee-eeEEEEEEEeEEEcCCCcccceecCCCceEeccCC--
Confidence            3678888888763  35777776444    4566  688887 45556899999877443211223666666666666  


Q ss_pred             eEEEe
Q 020448          137 IVHSE  141 (326)
Q Consensus       137 I~HsE  141 (326)
                      -.|--
T Consensus        91 ~~h~~   95 (251)
T PF14499_consen   91 EPHIT   95 (251)
T ss_dssp             -EEEE
T ss_pred             Cceee
Confidence            44443

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=85.24  E-value=2.7  Score=39.11  Aligned_cols=61  Identities=21%  Similarity=0.226  Sum_probs=44.1

Q ss_pred             CCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEe
Q 020448           91 GFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWI  156 (326)
Q Consensus        91 GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWi  156 (326)
                      -+++|-|..+|+ .|+++|.+.+.- -|..-.+.+|++-|+++|  ..|......+. ..++-+.+
T Consensus        35 ~~~~H~H~~~ei-~~v~~G~~~~~i-~~~~~~l~~g~l~~i~p~--~~H~~~~~~~~-~~~~~l~~   95 (278)
T PRK10296         35 VSGLHQHDYYEF-TLVLTGRYYQEI-NGKRVLLERGDFVFIPLG--SHHQSFYEFGA-TRILNVGI   95 (278)
T ss_pred             CCCCcccccEEE-EEEEeceEEEEE-CCEEEEECCCcEEEeCCC--CccceeeeCCC-cEEEEEEe
Confidence            468999998876 899999998765 355678999999999776  67765433222 34554544

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=85.07  E-value=6.5  Score=35.52  Aligned_cols=87  Identities=18%  Similarity=0.180  Sum_probs=60.0

Q ss_pred             EEeecccCCCCCC------CCCCCCC--CceEEEEEeeceEEEe--cCCCC--eeeeeCCcEEEEecCCCeEEEeeeCCC
Q 020448           79 LMLDEFSVSPPAG------FPDHPHR--GFETVTYMLQGGITHQ--DFSGH--KGTIHTGDVQWMTAGRGIVHSEMPAGE  146 (326)
Q Consensus        79 l~lD~~~~~~~~G------F~~HPHr--G~EtvTyvl~G~l~H~--DS~Gn--~~~i~~GdvQwMtAGsGI~HsE~~~~~  146 (326)
                      +.++.-.+.|+.-      -+.|-|.  +..=+-|+++|+-.+.  |--|.  ...++|||+-+..+  |..|.-.|.++
T Consensus        68 L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPp--g~~H~~iN~G~  145 (191)
T PRK04190         68 LNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPP--YWAHRSVNTGD  145 (191)
T ss_pred             eEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECC--CCcEEeEECCC
Confidence            5566666666542      1234454  5456789999986553  33333  46799999999998  68899999888


Q ss_pred             CceeEEEEEeccCCCCCCCCCCccccC
Q 020448          147 GVQNGLQLWINLSSSDKMIEPRYQEIP  173 (326)
Q Consensus       147 ~~~~~lQLWinLP~~~k~~~P~Y~~~~  173 (326)
                      .++.++=+|   |+.   ....|+.+.
T Consensus       146 epl~fl~v~---p~~---~~~dY~~i~  166 (191)
T PRK04190        146 EPLVFLACY---PAD---AGHDYGTIA  166 (191)
T ss_pred             CCEEEEEEE---cCC---cccccHHHH
Confidence            889888866   433   456788764

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=84.06  E-value=15  Score=31.13  Aligned_cols=75  Identities=21%  Similarity=0.303  Sum_probs=57.0

Q ss_pred             cEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCc---CceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeeccC
Q 020448          207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTV---NSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPL  283 (326)
Q Consensus       207 ~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~---~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl  283 (326)
                      ..+-+-.+.+|++..+--. ++--.+|+++|+.+|...   +...|.+|.+.+|+.-+.-.+.|.  ++.+++.+--.|+
T Consensus        35 FS~h~T~i~aGtet~~~Yk-nHlEAvyci~G~Gev~~~~~G~~~~i~pGt~YaLd~hD~H~lra~--~dm~~vCVFnPpl  111 (126)
T PF06339_consen   35 FSFHETTIYAGTETHIHYK-NHLEAVYCIEGEGEVEDLDTGEVHPIKPGTMYALDKHDRHYLRAK--TDMRLVCVFNPPL  111 (126)
T ss_pred             EEEEEEEEeCCCeeEEEec-CceEEEEEEeceEEEEEccCCcEEEcCCCeEEecCCCccEEEEec--CCEEEEEEcCCCC
Confidence            3455567899998775543 566789999999998532   236899999999987778888885  4788888887777


Q ss_pred             C
Q 020448          284 N  284 (326)
Q Consensus       284 ~  284 (326)
                      .
T Consensus       112 t  112 (126)
T PF06339_consen  112 T  112 (126)
T ss_pred             c
Confidence            3

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=83.60  E-value=7  Score=36.38  Aligned_cols=56  Identities=16%  Similarity=0.270  Sum_probs=40.8

Q ss_pred             CeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEE
Q 020448          218 AQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLI  278 (326)
Q Consensus       218 ~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~  278 (326)
                      +++.+.+  ++.=+.||++|++++  +|+ ...+.+||.+.+..|..+++...  ..++++.+
T Consensus       167 ~sf~wtl--~~dEi~YVLEGe~~l~IdG~-t~~l~pGDvlfIPkGs~~hf~tp--~~aRflyV  224 (233)
T PRK15457        167 AFFPWTL--NYDEIDMVLEGELHVRHEGE-TMIAKAGDVMFIPKGSSIEFGTP--SSVRFLYV  224 (233)
T ss_pred             Cccceec--cceEEEEEEEeEEEEEECCE-EEEeCCCcEEEECCCCeEEecCC--CCeeEEEE
Confidence            4455444  466899999998876  552 37899999999998888888542  46777554

>PLN02288 mannose-6-phosphate isomerase

Probab=82.10  E-value=13  Score=37.30  Aligned_cols=56  Identities=23%  Similarity=0.259  Sum_probs=34.6

Q ss_pred             ccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCcCc---eeecCccEEEEcCCCe
Q 020448          206 PTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNS---SAVSAHNVLVLSLGDG  262 (326)
Q Consensus       206 ~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~~---~~l~~~d~~~l~~g~~  262 (326)
                      +..+..+++.++.+..++. ...-..+.|++|++++++..+   ..+..|+.+.+..++.
T Consensus       333 eF~v~~~~l~~~~~~~~~~-~~gp~Illv~~G~~~i~~~~~~~~~~l~~G~~~fv~a~~~  391 (394)
T PLN02288        333 EFEVDHCDVPPGASVVFPA-VPGPSVFLVIEGEGVLSTGSSEDGTAAKRGDVFFVPAGTE  391 (394)
T ss_pred             ceEEEEEEeCCCCeEeecC-CCCCEEEEEEcCEEEEecCCccceEEEeceeEEEEeCCCc
Confidence            3456667888877644322 233478899999999964221   2266777776654433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	326
3acl_A	296	Crystal Structure Of Human Pirin In Complex With Tr		5e-89
1j1l_A	290	Crystal Structure Of Human Pirin: A Bcl-3 And Nucle		2e-85
2p17_A	277	Crystal Structure Of Gk1651 From Geobacillus Kausto		2e-47
1tq5_A	242	Crystal Structure Of Yhhw From Escherichia Coli Len		5e-09

>pdb|3ACL|A Chain A, Crystal Structure Of Human Pirin In Complex With Triphenyl Compound Length = 296

Iteration: 1
 Score =  324 bits (830), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 151/283 (53%), Positives = 204/283 (72%), Gaps = 2/283 (0%)
Query: 44  RMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETV 103
           + V   V  +   +G GA VRR+IGR +L++LDPFL+ DEF    P GFPDHPHRGFETV
Sbjct: 11  KKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETV 70
Query: 104 TYMLQGG-ITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSD 162
           +Y+L+GG + H+DF GH G ++ GD+QWMTAGRGI+H+EMP  E   +GLQLW+NL SS+
Sbjct: 71  SYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRSSE 130
Query: 163 KMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQ 222
           KM+EP+YQE+ SEEI +   DGV V +I+GE++G++S VYTRTPT++LDF L P A+  Q
Sbjct: 131 KMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQ 190
Query: 223 SIPETWNAFVYTIEGEGVFGTVNS-SAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQ 281
            IP+ W +F+YTI G+   G  ++   +  H+  VL  GD +   N+  K+  FVLIAG+
Sbjct: 191 PIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAGE 250
Query: 282 PLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQ 324
           PL EPV+Q+GPFVMN+  EI Q I D++  KNGFE AK W+S+
Sbjct: 251 PLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSK 293

>pdb|1J1L|A Chain A, Crystal Structure Of Human Pirin: A Bcl-3 And Nuclear Factor I Interacting Protein And A Cupin Superfamily Member Length = 290

Iteration: 1
 Score =  311 bits (798), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 147/283 (51%), Positives = 198/283 (69%), Gaps = 2/283 (0%)
Query: 44  RMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETV 103
           + V   V  +   +G GA VRR+IGR +L++LDPFL+ DEF    P GFPDHPHRGFETV
Sbjct: 5   KKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETV 64
Query: 104 TYMLQGG-ITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSD 162
           +Y+L+GG   H+DF GH G  + GD+QW TAGRGI+H+E P  E   +GLQLW+NL SS+
Sbjct: 65  SYLLEGGSXAHEDFCGHTGKXNPGDLQWXTAGRGILHAEXPCSEEPAHGLQLWVNLRSSE 124
Query: 163 KMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQ 222
           K +EP+YQE+ SEEI +   DGV V +I+GE++G++S VYTRTPT++LDF L P A+  Q
Sbjct: 125 KXVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQ 184
Query: 223 SIPETWNAFVYTIEGEGVFGTVNS-SAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQ 281
            IP+ W +F+YTI G+   G  ++   +  H+  VL  GD +   N+  K+  FVLIAG+
Sbjct: 185 PIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAGE 244
Query: 282 PLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQ 324
           PL EPV+Q+GPFV N+  EI Q I D++  KNGFE AK W+S+
Sbjct: 245 PLREPVIQHGPFVXNTNEEISQAILDFRNAKNGFERAKTWKSK 287

>pdb|2P17|A Chain A, Crystal Structure Of Gk1651 From Geobacillus Kaustophilus Length = 277

Iteration: 1
 Score =  186 bits (471), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 96/247 (38%), Positives = 141/247 (57%), Gaps = 3/247 (1%)
Query: 70  GDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQ 129
           G+ +  DPFL+L E  +     F  HPHRG ETVTY++ G + H D      T+  GDVQ
Sbjct: 31  GNWQEYDPFLLLXE-DIFERGTFDVHPHRGIETVTYVISGELEHFDSKAGHSTLGPGDVQ 89
Query: 130 WMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRI 189
           W TAGRG+VH E PA     + LQLW+NL S+ K  EPRYQ + S++    + +G  +R+
Sbjct: 90  WXTAGRGVVHKEDPASGSTVHSLQLWVNLPSAYKXTEPRYQNLRSKDXPVRKEEGATIRV 149
Query: 190 IAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAV 249
            +G S GV++P     P   ++  ++P   + Q +P  +N F+Y +EG GVFG  N    
Sbjct: 150 FSGSSKGVKAPTKNIVPVTXVEXIVEPGTTVVQDLPGHYNGFLYILEGSGVFGADNIEGK 209
Query: 250 SAHNVLVL--SLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIED 307
           +   +     + G+       + ++LR +L AG+P+NEPVV YGPFV N+  +I + I D
Sbjct: 210 AGQALFFSRHNRGEETELNVTAREKLRLLLYAGEPVNEPVVAYGPFVXNTPEQIREAIRD 269
Query: 308 YQLCKNG 314
           YQ  + G
Sbjct: 270 YQEGRFG 276

>pdb|1TQ5|A Chain A, Crystal Structure Of Yhhw From Escherichia Coli Length = 242

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 80  MLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVH 139
           ++++  +    GF  HPH+  E +TY+L+G + HQD  G+K  +  G+ Q  +AG GI H
Sbjct: 42  VINDDVIEAGQGFGTHPHKDXEILTYVLEGTVEHQDSXGNKEQVPAGEFQIXSAGTGIRH 101
Query: 140 SEM-PAGEGVQNGLQLWINLSSSDKMIEPRYQE 171
           SE  P+     +  Q+WI     +  I PRY++
Sbjct: 102 SEYNPSSTERLHLYQIWI--XPEENGITPRYEQ 132

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	326
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	1e-167
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	1e-155
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	1e-57
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	8e-39
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A* Length = 290

 Score =  465 bits (1199), Expect = e-167
 Identities = 151/286 (52%), Positives = 204/286 (71%), Gaps = 2/286 (0%)

Query: 41  SRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGF 100
              + V   V  +   +G GA VRR+IGR +L++LDPFL+ DEF    P GFPDHPHRGF
Sbjct: 2   GSSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGF 61

Query: 101 ETVTYMLQGG-ITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLS 159
           ETV+Y+L+GG + H+DF GH G ++ GD+QWMTAGRGI+H+EMP  E   +GLQLW+NL 
Sbjct: 62  ETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLR 121

Query: 160 SSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQ 219
           SS+KM+EP+YQE+ SEEI +   DGV V +I+GE++G++S VYTRTPT++LDF L P A+
Sbjct: 122 SSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAK 181

Query: 220 IHQSIPETWNAFVYTIEGEGVFGTVNS-SAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLI 278
             Q IP+ W +F+YTI G+   G  ++   +  H+  VL  GD +   N+  K+  FVLI
Sbjct: 182 HSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLI 241

Query: 279 AGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQ 324
           AG+PL EPV+Q+GPFVMN+  EI Q I D++  KNGFE AK W+S+
Sbjct: 242 AGEPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSK 287

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus} Length = 277

 Score =  434 bits (1118), Expect = e-155
 Identities = 100/276 (36%), Positives = 151/276 (54%), Gaps = 3/276 (1%)

Query: 41  SRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGF 100
           +  R + +    +++ +         +  G+ +  DPFL+L E        F  HPHRG 
Sbjct: 2   AIQRRIRRVKTVQMTTNSPIHRSGSVLEPGNWQEYDPFLLLMEDI-FERGTFDVHPHRGI 60

Query: 101 ETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSS 160
           ETVTY++ G + H D      T+  GDVQWMTAGRG+VH E PA     + LQLW+NL S
Sbjct: 61  ETVTYVISGELEHFDSKAGHSTLGPGDVQWMTAGRGVVHKEDPASGSTVHSLQLWVNLPS 120

Query: 161 SDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQI 220
           + KM EPRYQ + S+++   + +G  +R+ +G S GV++P     P   ++  ++P   +
Sbjct: 121 AYKMTEPRYQNLRSKDMPVRKEEGATIRVFSGSSKGVKAPTKNIVPVTMVEMIVEPGTTV 180

Query: 221 HQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDG--LSAWNRSSKQLRFVLI 278
            Q +P  +N F+Y +EG GVFG  N    +   +       G        + ++LR +L 
Sbjct: 181 VQDLPGHYNGFLYILEGSGVFGADNIEGKAGQALFFSRHNRGEETELNVTAREKLRLLLY 240

Query: 279 AGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNG 314
           AG+P+NEPVV YGPFVMN+  +I + I DYQ  + G
Sbjct: 241 AGEPVNEPVVAYGPFVMNTPEQIREAIRDYQEGRFG 276

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12 Length = 242

 Score =  185 bits (472), Expect = 1e-57
 Identities = 47/223 (21%), Positives = 83/223 (37%), Gaps = 23/223 (10%)

Query: 76  DPFLMLDEF-------SVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDV 128
           DP  M            +    GF  HPH+  E +TY+L+G + HQD  G+K  +  G+ 
Sbjct: 31  DPNFMGFSALRVINDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQDSMGNKEQVPAGEF 90

Query: 129 QWMTAGRGIVHSEMPA-GEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEV 187
           Q M+AG GI HSE         +  Q+WI     +  I PRY++   +          + 
Sbjct: 91  QIMSAGTGIRHSEYNPSSTERLHLYQIWIM--PEENGITPRYEQRRFDA------VQGKQ 142

Query: 188 RIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSS 247
            +++ +       +          + L    Q    I      ++  ++G     T+N  
Sbjct: 143 LVLSPD--ARDGSLKVHQDMELYRWALLKDEQSVHQIAAERRVWIQVVKGN---VTINGV 197

Query: 248 AVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQY 290
             S  + L +     +S    +      +L    P++  V  +
Sbjct: 198 KASTSDGLAIWDEQAISI--HADSDSEVLLFDLPPVSGRVEHH 238

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli} Length = 256

 Score =  136 bits (345), Expect = 8e-39
 Identities = 36/215 (16%), Positives = 76/215 (35%), Gaps = 25/215 (11%)

Query: 71  DLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQW 130
            L       +L++  ++P A F    +   + +  +L G   ++D  G+      G+   
Sbjct: 56  KLLGYASLRVLNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALL 115

Query: 131 MTAGRGIVHSEMPAGEGVQ-NGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRI 189
           ++   G+ +SE    +      +QLW++  +  +   P  Q++     K+        ++
Sbjct: 116 LSTQPGVSYSEHNLSKDKPLTRMQLWLD--ACPQRENPLIQKLALNMGKQ--------QL 165

Query: 190 IAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAV 249
           IA    G    +  R         L      +  +     A++ +I G+    T +    
Sbjct: 166 IASPE-GAMGSLQLRQQVWLHHIVLDKGESANFQLHG-PRAYLQSIHGKFHALTHH---- 219

Query: 250 SAHNVLVLSLGDGLSAWN------RSSKQLRFVLI 278
                  L+ GDG    +       +   LR +LI
Sbjct: 220 --EEKAALTCGDGAFIRDEANITLVADSPLRALLI 252

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 6e-05
 Identities = 32/207 (15%), Positives = 67/207 (32%), Gaps = 50/207 (24%)

Query: 126 GDVQWMTAGRGIVHSEMPAGEGVQN-GLQLWINLSS-SDKMIEPRYQEIPSEEIKRAETD 183
             + W+       +S     E +Q    Q+  N +S SD     +        I+     
Sbjct: 182 FKIFWLNLKN--CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL---RIHSIQA---- 232

Query: 184 GVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAF------VYTIEG 237
             E+R +      ++S  Y     + L          +    + WNAF      + T   
Sbjct: 233 --ELRRL------LKSKPYENC-LLVLL---------NVQNAKAWNAFNLSCKILLTTRF 274

Query: 238 EGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQL--RFVLIAGQPLNEPVVQYGPFVM 295
           + V   ++++  +  ++ +      L+      K L  +++    Q L   V+   P  +
Sbjct: 275 KQVTDFLSAATTT--HISLDHHSMTLTP--DEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 296 NSQAEIDQTIEDYQLCKNGFENAKYWR 322
           +  AE           ++G      W+
Sbjct: 331 SIIAE---------SIRDGLATWDNWK 348

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	326
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	100.0
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	100.0
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	100.0
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	100.0
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	98.9
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	98.84
1sef_A	274	Conserved hypothetical protein; structural genomic	98.82
1sfn_A	246	Conserved hypothetical protein; structural genomic	98.76
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	98.74
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	98.66
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	98.5
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	98.45
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	98.2
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	98.19
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	98.15
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	97.97
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	97.68
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	97.65
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	97.64
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	97.55
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	97.51
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	97.51
3h8u_A	125	Uncharacterized conserved protein with double-STR	97.36
4i4a_A	128	Similar to unknown protein; structural genomics, P	97.32
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	97.26
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	97.26
1v70_A	105	Probable antibiotics synthesis protein; structural	97.16
1v70_A	105	Probable antibiotics synthesis protein; structural	97.15
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	97.1
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	97.07
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	97.06
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	97.06
1sfn_A	246	Conserved hypothetical protein; structural genomic	97.01
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	96.94
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	96.93
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	96.9
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	96.83
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	96.82
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	96.81
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	96.74
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	96.72
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	96.7
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	96.68
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	96.66
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	96.61
1sef_A	274	Conserved hypothetical protein; structural genomic	96.59
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	96.54
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	96.51
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	96.5
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	96.48
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	96.46
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	96.46
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	96.43
3h8u_A	125	Uncharacterized conserved protein with double-STR	96.37
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	96.29
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	96.29
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	96.27
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	96.25
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	96.24
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	96.24
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	96.24
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	96.18
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	96.17
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	96.16
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	96.15
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	96.12
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	96.11
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	96.07
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	96.01
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	95.99
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	95.97
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	95.97
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	95.95
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	95.95
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	95.92
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	95.89
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	95.89
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	95.87
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	95.83
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	95.81
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	95.75
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	95.7
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	95.64
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	95.63
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	95.61
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	95.6
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	95.58
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	95.54
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	95.53
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	95.52
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	95.5
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	95.5
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	95.33
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	95.31
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	95.16
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	95.1
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	95.05
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	95.02
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	94.99
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	94.97
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	94.93
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	94.84
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	94.59
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	94.48
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	94.36
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	94.31
4i4a_A	128	Similar to unknown protein; structural genomics, P	94.21
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	94.14
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	94.13
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	94.06
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	93.95
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	93.84
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	93.66
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	93.65
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	93.55
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	93.52
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	93.49
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	93.46
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	93.41
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	93.17
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	93.13
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	93.09
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	92.96
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	92.75
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	92.71
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	92.68
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	92.51
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	92.3
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	92.14
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	91.97
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	91.54
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	91.51
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	91.42
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	91.15
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	91.07
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	91.05
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	90.68
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	90.4
3bcw_A	123	Uncharacterized protein; structural genomics, join	89.47
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	88.99
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	88.72
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	88.61
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	88.43
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	88.06
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	87.65
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	87.37
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	87.35
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	87.01
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	86.2
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	85.99
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	85.84
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	85.58
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	85.21
3uss_A	211	Putative uncharacterized protein; cupin, three his	84.68
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	84.09
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	83.76
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	83.51
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	83.4
3bcw_A	123	Uncharacterized protein; structural genomics, join	83.24
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	83.02
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	81.98
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	81.64
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	81.16
2qdr_A	303	Uncharacterized protein; double-stranded beta-heli	80.93
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	80.73

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=100.00  E-value=8.6e-89  Score=644.03  Aligned_cols=285  Identities=53%  Similarity=0.968  Sum_probs=268.5

Q ss_pred             cccccceEEcCCccCCCCceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEe-eceEEEecCCCCe
Q 020448           42 RPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYML-QGGITHQDFSGHK  120 (326)
Q Consensus        42 ~~r~i~~~~~~~~~~~G~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl-~G~l~H~DS~Gn~  120 (326)
                      ..|+|.+++.++++.+|+||+|+|++|.+..+.||||+||||+.+.+++||++||||||||||||+ +|+++|+||+||.
T Consensus         3 ~~r~i~~~~~~~~~~~G~G~~v~R~~~~~~~~~~gpf~~ld~~~~~~~~Gf~~HPHrg~EtVTyvl~~G~~~H~DS~Gn~   82 (290)
T 1j1l_A            3 SSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHEDFCGHT   82 (290)
T ss_dssp             CCCCEEEEEECCEEEETBTEEEEECTTSTTCCCCTTEEEEEEEEECTTCBEEEEEEBSEEEEEEECSSSCEEEEETTSCE
T ss_pred             ccceeeeEEcCCccccCCCeEEEEeCCCccccccCcEEEEEccccCCCCCCCCCCCCCeEEEEEECcceEEEEeeCCCCc
Confidence            348899999999999999999999999999999999999999999999999999999999999999 9999999999999


Q ss_pred             eeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCCCCCCCCCCccccCCCccceecCCCeEEEEEeCCCCCCcCc
Q 020448          121 GTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSP  200 (326)
Q Consensus       121 ~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~~~k~~~P~Y~~~~~~~iP~~~~~g~~~rViaG~~~g~~sp  200 (326)
                      ++|+||||||||||+||+|||+|..++++|+||||||||++.|+.+|+|+++.+++||....+|..+||++|++.|.++|
T Consensus        83 ~~i~~GdvQwMtAG~GI~HsE~~~~~~~~~~lQlWvnLP~~~k~~~P~y~~~~~~~ip~~~~~g~~v~viaG~~~g~~~p  162 (290)
T 1j1l_A           83 GKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSK  162 (290)
T ss_dssp             EEECTTCEEEEECTTCEEEEEEECSSSCEEEEEEEEECCGGGTTSCCEEEEECGGGSCCCEETTEEEEEEESEETTEECC
T ss_pred             eEECCCcEEEEeCCCCEEEEeEcCCCCCEEEEEEEecCChhhcCCCCcceecccccCCcEeECCEEEEEEcCCcccCCCc
Confidence            99999999999999999999999877899999999999999999999999999999998766678999999998888999


Q ss_pred             ccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCcCc-eeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          201 VYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNS-SAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       201 ~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~~-~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      +.++++++++|++|++|+++++++|+++++|+||++|++.|++.+. ..+.++.++.+..|+.++|++.++++++||||+
T Consensus       163 ~~~~~~~~~~~~~l~~g~~~~~~l~~~~~~~lyv~~G~v~v~g~~~~~~~~~~~~~~l~~gd~~~i~~~a~~~a~~LLl~  242 (290)
T 1j1l_A          163 VYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIA  242 (290)
T ss_dssp             CCCSSCEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEESCTTSCEEECTTEEEEECSCSEEEEECCSSSCEEEEEEE
T ss_pred             eeccCCcEEEEEEECCCCEEEeecCCCCEEEEEEEeCeEEECCcccceeccCceEEEecCCCEEEEEEcCCCCcEEEEEE
Confidence            9999999999999999999999999999999999999999987321 468888888888899999985324689999999


Q ss_pred             eccCCCceeeeCCcccCcHHHHHHHHHHHhccCCCCCCCCCccccCC
Q 020448          280 GQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQSQ  326 (326)
Q Consensus       280 G~pl~epi~~~GpFVmnt~~ei~~A~~dy~~g~~g~~~~~~w~~~~~  326 (326)
                      |+||+|||++||||||||+|||+||++|||+|+|||++++.|+|+|+
T Consensus       243 G~Pl~epi~~~gpFVmnt~eeI~qA~~d~~~g~~~f~~~~~w~s~~~  289 (290)
T 1j1l_A          243 GEPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSKIG  289 (290)
T ss_dssp             ECCCCSCCEEETTEEESSHHHHHHHHHHHHTTCTTCGGGSSCCCSTT
T ss_pred             cccCCCCEEecCCeeeCCHHHHHHHHHHHHhccCCcccCCCCceecC
Confidence            99999999999999999999999999999999999999999999996

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.1e-85  Score=619.59  Aligned_cols=272  Identities=38%  Similarity=0.686  Sum_probs=230.8

Q ss_pred             cccccccceEEcCCccCCCCceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCC
Q 020448           40 FSRPRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGH  119 (326)
Q Consensus        40 ~~~~r~i~~~~~~~~~~~G~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn  119 (326)
                      |+..|+|.+++.+.++.+|+|++|+|++|....+.||||+|||| .+.++.||++||||||||||||++|+++|+||+||
T Consensus         1 ~~~~r~i~~~~~~~~~~~G~g~~v~R~~~~~~~~~~gpf~~ld~-~~~~~~gf~~HPHrg~EtVTyvl~G~~~H~DS~Gn   79 (277)
T 2p17_A            1 MAIQRRIRRVKTVQMTTNSPIHRSGSVLEPGNWQEYDPFLLLME-DIFERGTFDVHPHRGIETVTYVISGELEHFDSKAG   79 (277)
T ss_dssp             CCEECCEEEEEECCEEEEETTEEEEEEECSSCHHHHTTEEEEEE-EEECTTCCCCEEECSEEEEEEEEESCEEEEETTTE
T ss_pred             CCCccEeeEEEcceecccCCCeEEeecCCcccccccCCEEEEec-CCCCCCCCCCCCCCCcEEEEEEEEeEEEEeeCCCC
Confidence            45689999999999999999999999999998899999999999 99999999999999999999999999999999999


Q ss_pred             eeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCCCCCCCCCCccccCCCccceecCCCeEEEEEeCCCCCCcC
Q 020448          120 KGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRS  199 (326)
Q Consensus       120 ~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~~~k~~~P~Y~~~~~~~iP~~~~~g~~~rViaG~~~g~~s  199 (326)
                      .++|+||||||||||+||+|||+|..+.++|+||||||||++.|+.+|+|+++.+++||.+..+|..+|||+|++.|.++
T Consensus        80 ~~~i~~GdvQwMtAG~GI~HsE~~~~~~~~~~lQlWvnLP~~~k~~~P~y~~~~~~~ip~~~~~g~~~rviaG~~~g~~~  159 (277)
T 2p17_A           80 HSTLGPGDVQWMTAGRGVVHKEDPASGSTVHSLQLWVNLPSAYKMTEPRYQNLRSKDMPVRKEEGATIRVFSGSSKGVKA  159 (277)
T ss_dssp             EEEECTTCEEEEECTTCEEEEEEECTTCCEEEEEEEEECCGGGTTCCCEEEEECGGGSCEEEETTEEEEEEESEETTEEC
T ss_pred             ceEECCCeEEEEeCCCCEEEEeecCCCCCEEEEEEEeeCChhhcCCCCcceeeccccCCeeeeCCeEEEEEEcCccCCCC
Confidence            99999999999999999999999987789999999999999889999999999999999876577899999999889999


Q ss_pred             cccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCcCceeecCccEEEEcC-C----CeEEEEecCCCCeE
Q 020448          200 PVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSL-G----DGLSAWNRSSKQLR  274 (326)
Q Consensus       200 p~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~~~~l~~~d~~~l~~-g----~~l~i~a~~~~~a~  274 (326)
                      |++++++++++|++|++|+++++++|+++++|+||++|++.|+|. ...+.++|++.|.+ +    +.++|+|.  ++++
T Consensus       160 p~~~~~~~~~~~~~L~~g~~~~~~~~~~~~~~lyv~~G~v~v~g~-~~~l~~~d~~~~~~~~~~~~~~l~l~a~--~~a~  236 (277)
T 2p17_A          160 PTKNIVPVTMVEMIVEPGTTVVQDLPGHYNGFLYILEGSGVFGAD-NIEGKAGQALFFSRHNRGEETELNVTAR--EKLR  236 (277)
T ss_dssp             CCCCSSCEEEEEEEECTTCEEEEEEETTCEEEEEEEESEEEETTT-TEEEETTEEEEECCCCTTCEEEEEEEES--SSEE
T ss_pred             ceecCCCCEEEEEEECCCCEEEeccCCCCEEEEEEEeCeEEECCC-ceEeCCCcEEEEcCCCCCccceEEEEeC--CCcE
Confidence            999999999999999999999999999999999999999999872 25799999999995 7    78999985  5799


Q ss_pred             EEEEeeccCCCceeeeCCcccCcHHHHHHHHHHHhccCCCC
Q 020448          275 FVLIAGQPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGF  315 (326)
Q Consensus       275 ~LL~~G~pl~epi~~~GpFVmnt~~ei~~A~~dy~~g~~g~  315 (326)
                      |||++|+||+|||++||||||||+|||+||++|||+|+||+
T Consensus       237 ~Ll~~G~Pl~epi~~~gpfVmnt~eei~qA~~d~~~g~fg~  277 (277)
T 2p17_A          237 LLLYAGEPVNEPVVAYGPFVMNTPEQIREAIRDYQEGRFGR  277 (277)
T ss_dssp             EEEEEECCCCCCC----------------------------
T ss_pred             EEEEeccccCCCeEecCCeeeCCHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999985

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=100.00  E-value=8e-60  Score=435.74  Aligned_cols=220  Identities=19%  Similarity=0.326  Sum_probs=198.8

Q ss_pred             CccCCCCceEEEEecCCCC-----CCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCc
Q 020448           53 KLSHDGDGAVVRRAIGRGD-----LRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGD  127 (326)
Q Consensus        53 ~~~~~G~g~~v~r~~~~~~-----~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~Gd  127 (326)
                      +...+|+|++++|+|++..     ...||||+++|++.++|++||++||||||||||||++|+++|+||+||.++|+|||
T Consensus        10 rg~~~~~~l~~~~~fsf~~~~dP~~~~fg~l~v~n~d~i~pg~gf~~HPHrg~EtvTyvl~G~~~H~DS~Gn~~~i~~Gd   89 (242)
T 1tq5_A           10 RGHANHGWLDSWHTFSFANYYDPNFMGFSALRVINDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQDSMGNKEQVPAGE   89 (242)
T ss_dssp             SEEEECSSEEEEESSCBTTBCCSSCSCBTTEEEEEEEEECTTCEEEEEEECSCEEEEEEEESEEEEEESSSCEEEEETTC
T ss_pred             CCCccCCCEEEEEecccccccChhHhcCCceEeeccceeCCCCcCCCcCCCCcEEEEEEEEeEEEEEeCCCCcEEECCCc
Confidence            4566889999999998653     46789999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCeEEEeeeCC-CCceeEEEEEeccCCCCCCCCCCccccCCCccceecCCCeEEEEEeCCCCCCcCcccccCc
Q 020448          128 VQWMTAGRGIVHSEMPAG-EGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTP  206 (326)
Q Consensus       128 vQwMtAGsGI~HsE~~~~-~~~~~~lQLWinLP~~~k~~~P~Y~~~~~~~iP~~~~~g~~~rViaG~~~g~~sp~~~~~~  206 (326)
                      |||||||+||+|||+|.. ++++++||||| +|++ |+.+|+|+++.   +|... + .  |+|+|. .|.++|++++++
T Consensus        90 vQ~MtAG~GI~HsE~~~~~~~~l~~lQlWv-~P~~-k~~~P~y~~~~---~p~~~-~-g--~~iag~-~g~~~p~~~~~~  159 (242)
T 1tq5_A           90 FQIMSAGTGIRHSEYNPSSTERLHLYQIWI-MPEE-NGITPRYEQRR---FDAVQ-G-K--QLVLSP-DARDGSLKVHQD  159 (242)
T ss_dssp             EEEEECTTCEEEEEECCCSSCCEEEEEEEE-CCSS-CSCCCEEEEEC---CCCCS-S-E--EEEEES-SCGGGCEECSSS
T ss_pred             EEEEECCCCcEEEEEcCCCCCeEEEEEEEE-cchh-cCCCCcceeec---CCchh-C-C--EEEEec-CCCCCcEeccCC
Confidence            999999999999999976 57999999999 6985 99999999985   66544 3 2  999998 578899999999


Q ss_pred             cEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeeccCCCc
Q 020448          207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEP  286 (326)
Q Consensus       207 ~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl~ep  286 (326)
                      +++++++|++|+++++++|+++++|+||++|++.|+|   ..+.++|++.|.+++.++|+|.  ++++||||+++|+..-
T Consensus       160 ~~~~~~~l~~g~~~~~~~~~~~~~~~~v~~G~v~v~g---~~l~~gd~~~~~~~~~l~l~a~--~~a~~Ll~~~~~~~~~  234 (242)
T 1tq5_A          160 MELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTING---VKASTSDGLAIWDEQAISIHAD--SDSEVLLFDLPPVSGR  234 (242)
T ss_dssp             CEEEEEEECTTCEEEECCCTTCEEEEEEEESEEEETT---EEEETTCEEEEESCSCEEEEES--SSEEEEEEEECCC---
T ss_pred             CEEEEEEECCCCEEEeecCCCcEEEEEEccCcEEECC---EEeCCCCEEEECCCCeEEEEeC--CCCEEEEEECCccCCh
Confidence            9999999999999999999999999999999999998   8999999999998889999984  6899999999998654


Q ss_pred             e
Q 020448          287 V  287 (326)
Q Consensus       287 i  287 (326)
                      |
T Consensus       235 ~  235 (242)
T 1tq5_A          235 V  235 (242)
T ss_dssp             -
T ss_pred             h
Confidence            4

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=100.00  E-value=1e-55  Score=411.15  Aligned_cols=223  Identities=17%  Similarity=0.220  Sum_probs=191.9

Q ss_pred             cccccccceEEcCCccCCCCceEEEEecCCCC-----CCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEe
Q 020448           40 FSRPRMVAKKVHGKLSHDGDGAVVRRAIGRGD-----LRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQ  114 (326)
Q Consensus        40 ~~~~r~i~~~~~~~~~~~G~g~~v~r~~~~~~-----~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~  114 (326)
                      |.+.|+..+    +...+++|+.++|.|++..     ...||||+|+|++.+.|++||++||||||||||||++|+++|+
T Consensus        24 mi~~r~~~~----rg~~~~gwl~~~~~fsf~~~~dP~~~~fg~l~vln~~~~~pg~gf~~HPHrg~EtvTyvl~G~~~H~   99 (256)
T 2vec_A           24 GITTRTARQ----CGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYR   99 (256)
T ss_dssp             ------CCC----CSSSCTTGGGCCEEEECCCCCBTTBCSCCCEEEEEEEEECTTCEEEEECCSSEEEEEEEEESEEEEE
T ss_pred             eEEEEcHHH----CCCcccCCEEEEEeccCccccCHhHhcCCceEeccccccCCCCccCCcCCCCcEEEEEEEeeEEEEE
Confidence            444554333    4567888999999998753     4689999999999999999999999999999999999999999


Q ss_pred             cCCCCeeeeeCCcEEEEecCCCeEEEeeeCC-CCceeEEEEEeccCCCCCCCCCCccccCCCccceecCCCeEEEEEeCC
Q 020448          115 DFSGHKGTIHTGDVQWMTAGRGIVHSEMPAG-EGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGE  193 (326)
Q Consensus       115 DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~-~~~~~~lQLWinLP~~~k~~~P~Y~~~~~~~iP~~~~~g~~~rViaG~  193 (326)
                      ||+||.++|+||||||||||+||+|||+|.. ++++++||||||||++.+  +|+||++.   +|.    + .+|+|+|.
T Consensus       100 DS~Gn~~~i~~GdvQ~MtAG~GI~HsE~n~~~~~~l~~lQlWi~l~p~~~--~P~yq~~~---~p~----~-~~~lIag~  169 (256)
T 2vec_A          100 DSEGNHVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLWLDACPQRE--NPLIQKLA---LNM----G-KQQLIASP  169 (256)
T ss_dssp             ETTSCEEEEETTEEEEECCCTTCCEEEEECCSSSCEEEEEEEEECCTTSC--CCSEEEEE---CCC----S-SEEEEEES
T ss_pred             eCCCCEEEECCCeEEEEECCCCeEEEEEECCCCceEEEEEEEEeCChhcC--CCCceEEc---CCC----C-CEEEEEeC
Confidence            9999999999999999999999999999975 579999999999966543  39999974   552    2 47999998


Q ss_pred             CCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCcC--ceeecCccEEEEcCCCeEEEEecCCC
Q 020448          194 SMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVN--SSAVSAHNVLVLSLGDGLSAWNRSSK  271 (326)
Q Consensus       194 ~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~--~~~l~~~d~~~l~~g~~l~i~a~~~~  271 (326)
                      . |.++|++++++++++++.|++|+++++++++++ +|+||++|+++|+|.+  ...+.++|++.|.+++.++|+|.  +
T Consensus       170 ~-G~~~p~~~~~~~~~~~~~L~~g~~~~~~~~~~~-~~l~v~~G~v~v~g~~~~~~~l~~gd~~~l~~~~~l~l~a~--~  245 (256)
T 2vec_A          170 E-GAMGSLQLRQQVWLHHIVLDKGESANFQLHGPR-AYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITLVAD--S  245 (256)
T ss_dssp             S-CGGGCEECSSSCEEEEEEECTTCEEEEECSSSE-EEEEEEESCEEEEETTEEEEEECTTCEEEEESCSEEEEEES--S
T ss_pred             C-CCCCceEccCCcEEEEEEECCCCEEEEecCCCe-EEEEEEECEEEECCccccceEECCCCEEEECCCCeEEEEeC--C
Confidence            4 788999999999999999999999999999999 9999999999998621  15799999999998899999984  5


Q ss_pred             CeEEEEEee
Q 020448          272 QLRFVLIAG  280 (326)
Q Consensus       272 ~a~~LL~~G  280 (326)
                      +++||||.-
T Consensus       246 ~a~~LL~dl  254 (256)
T 2vec_A          246 PLRALLIDL  254 (256)
T ss_dssp             SEEEEEEEE
T ss_pred             CCEEEEEEe
Confidence            899999873

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=98.90  E-value=6.5e-08  Score=90.23  Aligned_cols=179  Identities=16%  Similarity=0.238  Sum_probs=120.6

Q ss_pred             CCCCCCC--CCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCCC-C
Q 020448           86 VSPPAGF--PDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSS-D  162 (326)
Q Consensus        86 ~~~~~GF--~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~~-~  162 (326)
                      +.|+.+.  +.|.|. .|-+-||++|+++-.-. |..-.|++||.-++.+|  +.|+-.|.++.+++++  ||..+-. .
T Consensus        75 l~PG~~~~~~~h~H~-~eE~~~Vl~G~l~v~v~-g~~~~L~~GD~i~ip~~--~~H~~~N~g~~~~~~l--~v~~~y~~~  148 (278)
T 1sq4_A           75 LAPNGGSDKPEQDPN-AEAVLFVVEGELSLTLQ-GQVHAMQPGGYAFIPPG--ADYKVRNTTGQHTRFH--WIRKHYQKV  148 (278)
T ss_dssp             EEEEEEESSCCCCTT-EEEEEEEEESCEEEEES-SCEEEECTTEEEEECTT--CCEEEECCSSSCEEEE--EEEEECCCC
T ss_pred             ECCCCccCCCCcCCC-ceEEEEEEeCEEEEEEC-CEEEEECCCCEEEECCC--CcEEEEECCCCCEEEE--EEEeccccC
Confidence            4444443  456676 56677999999887644 67789999999999986  6799999877777774  5532111 1


Q ss_pred             CCC-CCCccccCCCcccee---cCCCe--EEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEee
Q 020448          163 KMI-EPRYQEIPSEEIKRA---ETDGV--EVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIE  236 (326)
Q Consensus       163 k~~-~P~Y~~~~~~~iP~~---~~~g~--~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~  236 (326)
                      ... .|....-..++++..   ..++.  ..|.+++.        ....++.+..++|++|+++-+.-...+.-.+||++
T Consensus       149 ~g~~~p~~~vgn~~di~~~~~~~~~~~~~~~r~l~p~--------~~~~~~~~~~~~l~pG~~i~~~~~h~~e~~~~il~  220 (278)
T 1sq4_A          149 DGVPLPEAFVTNEQDIQPLVMPDTEGRWSTTRFVDMS--------DMRHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLE  220 (278)
T ss_dssp             TTCCCCCCEEEEGGGSCCEECSSGGGCEEEECSSCTT--------CTTCSEEEEEEEECSSSEESCCCCCSEEEEEEEEE
T ss_pred             CCCcCCcccccchhhcCcccCCCCCCceeEEEEecCC--------CcCCCeEEEEEEECCCCCcCCCCCCCccEEEEEEe
Confidence            112 343221111233222   12234  44544432        23457888889999999887655556668899999


Q ss_pred             cceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          237 GEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       237 G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      |++.+  || +...|++||.+.+..+..-.+.+.+++++++||+-
T Consensus       221 G~~~~~~~~-~~~~v~~GD~~~~~~~~~h~~~n~g~~~~~yl~~~  264 (278)
T 1sq4_A          221 GKAVYRLNQ-DWVEVEAGDFMWLRAFCPQACYSGGPGRFRYLLYK  264 (278)
T ss_dssp             CEEEEEETT-EEEEEETTCEEEEEESCCEEEECCSSSCEEEEEEE
T ss_pred             CEEEEEECC-EEEEeCCCCEEEECCCCCEEEEcCCCCCEEEEEEE
Confidence            99886  44 33789999999999888778888767788888764

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=98.84  E-value=1.9e-07  Score=85.76  Aligned_cols=201  Identities=13%  Similarity=0.129  Sum_probs=125.6

Q ss_pred             ceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCC-CCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeE
Q 020448           60 GAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHP-HRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIV  138 (326)
Q Consensus        60 g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HP-HrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~  138 (326)
                      +.+.+.++.......+.++++    .+.|+.+.+.|+ |.+.|-+-||++|+++-.- -|..-.|++||.-++.||.  -
T Consensus        44 ~~~~~~l~~~~~~~~~~~~~~----~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~-~~~~~~L~~Gd~~~~~~~~--~  116 (261)
T 1rc6_A           44 NCDATILSTPKLGASFVDYLV----TLHQNGGNQQGFGGEGIETFLYVISGNITAKA-EGKTFALSEGGYLYCPPGS--L  116 (261)
T ss_dssp             EEEEEECCCGGGTCSSEEEEE----EEEEEEEESSCSCCTTEEEEEEEEESEEEEEE-TTEEEEEETTEEEEECTTC--C
T ss_pred             CcEEEEEeCCCCCCcEEEEEE----EEcCCCccCCCCCCCCceEEEEEEEeEEEEEE-CCEEEEECCCCEEEECCCC--C
Confidence            556665554432234444433    245555555554 4688999999999998764 3556789999999999975  6


Q ss_pred             EEeeeCCCCceeEEEEEeccCCC-CCCCCCCccccCCCccceec---CCCeEEEEEeCCCCCCcCcccccCccEEEEEEE
Q 020448          139 HSEMPAGEGVQNGLQLWINLSSS-DKMIEPRYQEIPSEEIKRAE---TDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTL  214 (326)
Q Consensus       139 HsE~~~~~~~~~~lQLWinLP~~-~k~~~P~Y~~~~~~~iP~~~---~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L  214 (326)
                      |+=.|..+.++++  ||+.-+.. .+...|.......+++|...   .++...|.+....        ....+.+..+.+
T Consensus       117 H~~~N~~~~~~~~--l~v~~~~~~~~g~~p~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~  186 (261)
T 1rc6_A          117 MTFVNAQAEDSQI--FLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKE--------LGFDMNMHILSF  186 (261)
T ss_dssp             CEEEECSSSCEEE--EEEEEECCCCTTCCCCCEEEEGGGSCCC-------CEEEECSCCS--------TTCSEEEEEEEE
T ss_pred             EEEEeCCCCCEEE--EEEEeccccCCCCCCceEEcCHHHCCcccCCCCcceEEEEecCcc--------cCCceEEEEEEE
Confidence            8888877777766  46642221 12224443333344555432   1234556554431        133566788899


Q ss_pred             CCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCC-CCeEEEEE
Q 020448          215 KPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSS-KQLRFVLI  278 (326)
Q Consensus       215 ~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~-~~a~~LL~  278 (326)
                      ++|+........+..-++||++|++++  ++ +...+++||.+.+..+..=.+.+.++ +++++|++
T Consensus       187 ~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~-~~~~l~~GD~i~~~~~~~H~~~n~g~~~~~~~l~~  252 (261)
T 1rc6_A          187 APGASHGYIETHVQEHGAYILSGQGVYNLDN-NWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYS  252 (261)
T ss_dssp             CTTCCBEEEEEESSCEEEEEEESEEEEESSS-CEEEEETTCEEEECSSEEEEEEEC----CEEEEEE
T ss_pred             CCCCccCcccCCCceEEEEEEEeEEEEEECC-EEEEeCCCCEEEECCCCcEEeEeCCCCcCEEEEEE
Confidence            999876544333456799999999887  34 33789999999998766555666555 66787775

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=98.82  E-value=2.6e-07  Score=85.64  Aligned_cols=202  Identities=11%  Similarity=0.076  Sum_probs=131.3

Q ss_pred             ceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCC-CCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeE
Q 020448           60 GAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHP-HRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIV  138 (326)
Q Consensus        60 g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HP-HrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~  138 (326)
                      +.+.+.+........+.++++    .+.|+.+...|+ |.+.|-+-||++|+++-.- -|..-.|++||.-.+.||.  -
T Consensus        47 ~~~~~~l~~~~~~~~~~~~~~----~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~-~~~~~~L~~GD~~~~~~~~--~  119 (274)
T 1sef_A           47 NVDISILGSPKLGATFVDYIA----TFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSD-GQETHELEAGGYAYFTPEM--K  119 (274)
T ss_dssp             EEEEEECSCGGGTCSSEEEEE----EEEEEEEECSCSSBTTEEEEEEEEESEEEEEC-SSCEEEEETTEEEEECTTS--C
T ss_pred             CeEEEEEcCCCCCCcEEEEEE----EECCCCcCCCCCCCCCceEEEEEEEeEEEEEE-CCEEEEECCCCEEEECCCC--C
Confidence            456665554432344554443    244555555555 4688999999999998764 3567899999999999874  6


Q ss_pred             EEeeeCCCCceeEEEEEeccCCC-CCCCCCCccccCCCccceec---CCCeEEEEEeCCCCCCcCcccccCccEEEEEEE
Q 020448          139 HSEMPAGEGVQNGLQLWINLSSS-DKMIEPRYQEIPSEEIKRAE---TDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTL  214 (326)
Q Consensus       139 HsE~~~~~~~~~~lQLWinLP~~-~k~~~P~Y~~~~~~~iP~~~---~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L  214 (326)
                      |+=.|..+.++++  ||+.-+-. .....|.......+++|...   .++...+.+.....        ..++.++.+.+
T Consensus       120 H~~~N~~~~~~~~--l~v~~~y~~~~g~~p~~~v~~~~d~~~~~~~~~~g~~~~~l~~~~~--------~~~~~~~~~~l  189 (274)
T 1sef_A          120 MYLANAQEADTEV--FLYKKRYQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLPKEF--------DFDMNMHILSF  189 (274)
T ss_dssp             CEEEESSSSCEEE--EEEEEECCCCTTCCCCCEEEEGGGSCCEEGGGCTTEEEEECSCSST--------TCSEEEEEEEE
T ss_pred             EEEEeCCCCCEEE--EEEEeeeeeCCCCCCcceeCChHHCCccccCCCCCeEEEEeCCccc--------CCCEEEEEEEE
Confidence            8888877777766  46632211 12234555555566666542   35677787765421        12567778899


Q ss_pred             CCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCC-CCeEEEEEe
Q 020448          215 KPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSS-KQLRFVLIA  279 (326)
Q Consensus       215 ~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~-~~a~~LL~~  279 (326)
                      ++|+.....-.-...-++||++|++++  ++ +...|++||.+.+..+..=.+.+.++ +.+++|++.
T Consensus       190 ~pg~~~~~~H~H~~~E~~yVl~G~~~~~i~~-~~~~l~~GD~i~i~~~~~H~~~n~~~~~~~~~l~~~  256 (274)
T 1sef_A          190 EPGASHAYIETHVQEHGAYLISGQGMYNLDN-EWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSK  256 (274)
T ss_dssp             CTTCBCSSCBCCSCCEEEEEEECEEEEEETT-EEEEEETTCEEEECTTCCEEEEEECSSSCEEEEEEE
T ss_pred             CCCCccCcceeccCeEEEEEEeCEEEEEECC-EEEEECCCCEEEECCCCCEEEEeCCCCCCEEEEEEE
Confidence            999875331111335789999998876  44 23789999999999776555666544 567877763

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=98.76  E-value=1.1e-06  Score=80.15  Aligned_cols=197  Identities=14%  Similarity=0.140  Sum_probs=128.8

Q ss_pred             CceEEEEecCC--CCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCC
Q 020448           59 DGAVVRRAIGR--GDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRG  136 (326)
Q Consensus        59 ~g~~v~r~~~~--~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsG  136 (326)
                      .+...+.+...  .....+.++++    .+.|+.+.+.|+   .|-+-||++|+++-.- -|..-.|++||.-.+.||. 
T Consensus        32 ~~~~~~~l~~~~~~~~~~~~~~~~----~l~Pg~~~~~~~---~ee~~~Vl~G~~~~~~-~~~~~~l~~Gd~~~~p~~~-  102 (246)
T 1sfn_A           32 PGSAIVLHIAPVVGLGARFVQFTA----EMPAGAQATESV---YQRFAFVLSGEVDVAV-GGETRTLREYDYVYLPAGE-  102 (246)
T ss_dssp             TTCEEEEEECTTSTTCCSSEEEEE----EECTTCEEECCS---SEEEEEEEEEEEEEEC-SSCEEEECTTEEEEECTTC-
T ss_pred             cCCEEEEEecCCCCCCCcEEEEEE----EECCCCcCCCCc---eeEEEEEEECEEEEEE-CCEEEEECCCCEEEECCCC-
Confidence            35566555543  22234444433    356666666665   7888999999987753 2567899999999999974 


Q ss_pred             eEEEeeeCCCCceeEEEEEeccC--CCCCCCCCCccccCCCccceec---CCCeEEEEEeCCCCCCcCcccccCccEEEE
Q 020448          137 IVHSEMPAGEGVQNGLQLWINLS--SSDKMIEPRYQEIPSEEIKRAE---TDGVEVRIIAGESMGVRSPVYTRTPTMFLD  211 (326)
Q Consensus       137 I~HsE~~~~~~~~~~lQLWinLP--~~~k~~~P~Y~~~~~~~iP~~~---~~g~~~rViaG~~~g~~sp~~~~~~~~~~d  211 (326)
                       .|+=.|.  +++++  +|+..+  +......|....-..++++...   ..|...|.++...        ...+..+..
T Consensus       103 -~H~~~n~--~~~~~--l~v~~~y~~~~g~~~p~~~vg~~~dv~~~~~~~~~g~~~r~l~p~~--------~~~~~~~~~  169 (246)
T 1sfn_A          103 -KHMLTAK--TDARV--SVFEKPYQTVEGVQAPGVYWGNERENPGYPFEGDDHLIARKLLPDE--------PAFDFMVST  169 (246)
T ss_dssp             -CCEEEEE--EEEEE--EEEEECCCCBTTBCCCCCEEEETTTCCCEETTSCTTEEEEECSCCC--------TTCSEEEEE
T ss_pred             -CEEEEeC--CCEEE--EEEEeeeccCCCCcCCceeeccHhhCCccccCCCCCeEEEEeCCCc--------cCCCeEEEE
Confidence             5776665  33443  455322  1111124543333334444432   3456777765531        234677888


Q ss_pred             EEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEE
Q 020448          212 FTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLI  278 (326)
Q Consensus       212 i~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~  278 (326)
                      ++|++|++..+..+....-++||++|++.+  || +...|++||.+.+..+..=.+.+.+++++++|++
T Consensus       170 ~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~~-~~~~l~~GD~~~~~~~~pH~~~n~g~~~~~yl~~  237 (246)
T 1sfn_A          170 MSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEE-NYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLY  237 (246)
T ss_dssp             EEECTTCBCSSCBCCSSCEEEEEEECEEEEEETT-EEEEEETTCEEEECTTCCEEEEEESSSCEEEEEE
T ss_pred             EEECCCCccCcccCCCceEEEEEEECEEEEEECC-EEEEcCCCCEEEECCCCCEEEEcCCCCCEEEEEE
Confidence            899999987765455667899999998876  44 3378999999999987777777766678888876

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=98.74  E-value=1e-06  Score=79.40  Aligned_cols=179  Identities=15%  Similarity=0.130  Sum_probs=115.5

Q ss_pred             EeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccC
Q 020448           80 MLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLS  159 (326)
Q Consensus        80 ~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP  159 (326)
                      .+-.+.+.++..++.|.|. .|.+.||++|+++-.=. |....+++||+-++-||  +.|+=.+.  +.+.++.+++...
T Consensus        38 ~~~~~~~~~G~~~~~h~h~-~~~~~~Vl~G~~~~~i~-~~~~~l~~Gd~~~~p~~--~~H~~~a~--~~~~~l~i~~~~~  111 (227)
T 3rns_A           38 YISLFSLAKDEEITAEAML-GNRYYYCFNGNGEIFIE-NNKKTISNGDFLEITAN--HNYSIEAR--DNLKLIEIGEKIG  111 (227)
T ss_dssp             EEEEEEECTTCEEEECSCS-SCEEEEEEESEEEEEES-SCEEEEETTEEEEECSS--CCEEEEES--SSEEEEEEEECC-
T ss_pred             EEEEEEECCCCccCccccC-CCEEEEEEeCEEEEEEC-CEEEEECCCCEEEECCC--CCEEEEEC--CCcEEEEEEeecc
Confidence            4445567778889999995 68889999999876543 67789999999999986  67877664  3577888877432


Q ss_pred             CC------CCCCCCCccccCCCccceecCCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEE
Q 020448          160 SS------DKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVY  233 (326)
Q Consensus       160 ~~------~k~~~P~Y~~~~~~~iP~~~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~ly  233 (326)
                      ..      .+..++. +.+...+......++...|.++..           ..+.+.-+.+++|+....-.. ....++|
T Consensus       112 ~~~~~~~~~~~l~~~-~~~~~~d~~~~~~g~~~~~~l~~~-----------~~~~~~~~~~~~G~~~~~H~H-~~~e~~~  178 (227)
T 3rns_A          112 DGNMENKTLKMLESA-SAFNLAEVVEYQEGKIVSKNLVAK-----------PNLVMTIMSFWKGESLDPHKA-PGDALVT  178 (227)
T ss_dssp             ----------------CCEESGGGSCCCTTCEEEEEEEEE-----------TTEEEEEEEECTTCEEEEECC-SSEEEEE
T ss_pred             cchhhhhHhhcCCcc-ccCcHHHccccCCCCEEEEEEEEC-----------CCeEEEEEEECCCCccCCEEC-CCcEEEE
Confidence            10      1112221 111211221122333344444321           135566678999998763332 3468999


Q ss_pred             EeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          234 TIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       234 Vl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      |++|++.+  +| +...+.+||.+.+..+..=.+.+. .+++++|++-
T Consensus       179 Vl~G~~~~~i~g-~~~~l~~Gd~i~ip~~~~H~~~~~-~~~~~~ll~~  224 (227)
T 3rns_A          179 VLDGEGKYYVDG-KPFIVKKGESAVLPANIPHAVEAE-TENFKMLLIL  224 (227)
T ss_dssp             EEEEEEEEEETT-EEEEEETTEEEEECTTSCEEEECC-SSCEEEEEEE
T ss_pred             EEeEEEEEEECC-EEEEECCCCEEEECCCCcEEEEeC-CCCEEEEEEE
Confidence            99999887  44 236899999999997776667762 2578888764

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=98.66  E-value=2.5e-06  Score=77.52  Aligned_cols=195  Identities=12%  Similarity=0.105  Sum_probs=120.6

Q ss_pred             CCceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEE-EecCCC
Q 020448           58 GDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQW-MTAGRG  136 (326)
Q Consensus        58 G~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQw-MtAGsG  136 (326)
                      +.|+..+.+....     ..+.+   +.+.|+...++|-|.+ +-+.||++|+++-.- -|....+.|||+-| +.+  |
T Consensus        21 ~~Gv~~~~l~~~~-----~~~~~---~~~~pg~~~~~H~H~~-~e~~~Vl~G~~~~~~-~~~~~~l~~Gd~i~~ip~--~   88 (243)
T 3h7j_A           21 ENGVRQYSTVRGD-----TEVLM---SYVPPHTNVEPHQHKE-VQIGMVVSGELMMTV-GDVTRKMTALESAYIAPP--H   88 (243)
T ss_dssp             TTSCEEEEEEETT-----EEEEE---EEECTTEEEEEECCSS-EEEEEEEESEEEEEE-TTEEEEEETTTCEEEECT--T
T ss_pred             CCCeEEEEEECCC-----CEEEE---EEECCCCccCCEECCC-cEEEEEEEeEEEEEE-CCEEEEECCCCEEEEcCC--C
Confidence            3477766554432     12222   3366776788999996 557799999998775 35678899999998 876  5


Q ss_pred             eEEEeeeCCCCceeEEEEEeccCCCCCCC-CCCccccCCCccceec-CCCeEEEEEeCCCCCCcCcccccCccEEEEEEE
Q 020448          137 IVHSEMPAGEGVQNGLQLWINLSSSDKMI-EPRYQEIPSEEIKRAE-TDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTL  214 (326)
Q Consensus       137 I~HsE~~~~~~~~~~lQLWinLP~~~k~~-~P~Y~~~~~~~iP~~~-~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L  214 (326)
                      +.|+=.|..++++..|.+- .++...... ++.|....   ++... ..+..+..+.+            ..+.++-+.+
T Consensus        89 ~~H~~~n~~~~~~~~l~i~-r~~~~e~~~~p~g~~~~~---L~~~~~~~~~~~~~~~~------------~~~~~~~~~~  152 (243)
T 3h7j_A           89 VPHGARNDTDQEVIAIDIK-RLKADETYTSPEDYFLDI---FKTRDLLPGMEVTFFVE------------DWVEIMLAKI  152 (243)
T ss_dssp             CCEEEEECSSSCEEEEEEE-ECCTTCCCCCCTTSEECC---EECSCSBTTBCEEEEEE------------TTEEEEEEEE
T ss_pred             CcEeeEeCCCCcEEEEEEe-ccCccccCCCchhhhhhh---ccCcccccCcceeeecc------------ceeEEEEEEE
Confidence            8899888877777765443 233211111 11221100   00000 00011122222            2244556688


Q ss_pred             CC-CCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448          215 KP-RAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       215 ~~-g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      ++ |+....-.. ...-++||++|++++  ++ +...+.+||.+.+..+..=.+.+.+++++++|.+-..|
T Consensus       153 ~p~g~~~~~H~H-~~~e~~~Vl~G~~~~~i~~-~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~p~  221 (243)
T 3h7j_A          153 PGNGGEMPFHKH-RNEQIGICIGGGYDMTVEG-CTVEMKFGTAYFCEPREDHGAINRSEKESKSINIFFPP  221 (243)
T ss_dssp             CTTTEEEEEECC-SSEEEEEECSSCEEEEETT-EEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEEESC
T ss_pred             CCCCCcCCCEeC-CCcEEEEEEECEEEEEECC-EEEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcCC
Confidence            99 876654332 245799999999877  44 23679999999999877767777656778888877754

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=98.50  E-value=4.9e-05  Score=72.33  Aligned_cols=192  Identities=17%  Similarity=0.142  Sum_probs=118.3

Q ss_pred             cCCCCCCCCCCCCCCceEEEEEeeceEEEe--cCCCC--eeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCC
Q 020448           85 SVSPPAGFPDHPHRGFETVTYMLQGGITHQ--DFSGH--KGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSS  160 (326)
Q Consensus        85 ~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~--DS~Gn--~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~  160 (326)
                      .+.|++-.++|.|.+-+-+.||++|+++-.  |.-|+  ...+++||+-...+|  +.|.-.|..+++++.+  |+.-|.
T Consensus        58 ~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip~g--~~H~~~n~~~~~~~~l--~v~~~~  133 (361)
T 2vqa_A           58 SLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPRG--WGHSIEGIGPDTAKFL--LVFNDG  133 (361)
T ss_dssp             EECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEEEECTT--CEEEEEECSSSCEEEE--EEESST
T ss_pred             EEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEEECCC--CeEEEEeCCCCCEEEE--EEECCC
Confidence            455665567899996677889999986543  44443  468999999999986  7898888766677775  442222


Q ss_pred             CCCC--------------------------------------------CCCCcccc--------CCCc-------c-cee
Q 020448          161 SDKM--------------------------------------------IEPRYQEI--------PSEE-------I-KRA  180 (326)
Q Consensus       161 ~~k~--------------------------------------------~~P~Y~~~--------~~~~-------i-P~~  180 (326)
                      ....                                            .+|+....        ..++       . +..
T Consensus       134 ~~~~~~~~~~~~~~~~~p~~vLa~~~~v~~~~~~~l~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (361)
T 2vqa_A          134 TFSEGATFSVTDWLSHTPIAWVEENLGWTAAQVAQLPKKQVYISSYGPASGPLASATPQGQTAKIEVPHTHNLLGQQPLV  213 (361)
T ss_dssp             TCCTTSSEEHHHHHHTSCHHHHHHHHTCCHHHHTTSCSSCCCEECSSCCCCCGGGCCCSSCCCBCCSCCEEECTTSCCSE
T ss_pred             CccccceecHhHHHHhCCHHHHHHHhCcCHHHHHhccccCceEEeCCCCCCccccccccCcCCCCCcceEeccccCCCcc
Confidence            1100                                            01100000        0000       0 000


Q ss_pred             cCCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE-----cCc-CceeecCccE
Q 020448          181 ETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF-----GTV-NSSAVSAHNV  254 (326)
Q Consensus       181 ~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i-----~g~-~~~~l~~~d~  254 (326)
                      ...+..++.+....    .|  ....+.+..+.|++|+........+..-++||++|++.+     +|+ ....+++||.
T Consensus       214 ~~~gg~~~~~~~~~----~~--~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~  287 (361)
T 2vqa_A          214 SLGGNELRLASAKE----FP--GSFNMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDV  287 (361)
T ss_dssp             EETTEEEEEECTTT----CT--TSTTCEEEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCE
T ss_pred             cCCCceEEEEehhh----Cc--CcccceEEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCE
Confidence            12233444443211    11  112467788899999987654444446899999999876     342 1368999999


Q ss_pred             EEEcCCCeEEEEecCCCCeEEEEEeeccCCCc
Q 020448          255 LVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEP  286 (326)
Q Consensus       255 ~~l~~g~~l~i~a~~~~~a~~LL~~G~pl~ep  286 (326)
                      +.+..+..-.+.+.+++++++|.+...+-.+-
T Consensus       288 ~~ip~~~~H~~~n~~~~~~~~l~~~~~~~~~~  319 (361)
T 2vqa_A          288 GYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQS  319 (361)
T ss_dssp             EEECTTCEEEEECCSSSCEEEEEEESSSSCCC
T ss_pred             EEECCCCeEEeEECCCCCEEEEEEECCCCcce
Confidence            99998877777776566789888876654343

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=98.45  E-value=1.8e-05  Score=73.54  Aligned_cols=200  Identities=12%  Similarity=0.054  Sum_probs=125.8

Q ss_pred             ceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEE
Q 020448           60 GAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVH  139 (326)
Q Consensus        60 g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~H  139 (326)
                      +.+++.++....-..|.++++    .+.|+.+-+.|+ .+-|.+-||++|+++=.-.-|..-.|++||.-...||.  .|
T Consensus        55 ~~~~~vL~sP~~G~~f~~~lv----~l~PGg~s~~~~-h~~EEfiyVleG~l~l~l~~g~~~~L~~Gds~y~p~~~--~H  127 (266)
T 4e2q_A           55 NTLGAYLITPATGSHFVMYLA----KMKEMSSSGLPP-QDIERLIFVVEGAVTLTNTSSSSKKLTVDSYAYLPPNF--HH  127 (266)
T ss_dssp             SEEEEEEECGGGTCSSEEEEE----EECSSEECCCCC-TTEEEEEEEEEECEEEEC--CCCEEECTTEEEEECTTC--CC
T ss_pred             CEEEEEEcCCCCCCcEEEEEE----EECcCCcCCCCC-CCCeEEEEEEEEEEEEEECCCcEEEEcCCCEEEECCCC--CE
Confidence            456666554332234555444    366665555564 57888889999999887554667899999999999974  56


Q ss_pred             EeeeCCCCceeEEEEEeccCCC-CCCCCCCccccCCCccceecC--CCeEEEEEeCCCCCCcCcccccCccEEEEEEECC
Q 020448          140 SEMPAGEGVQNGLQLWINLSSS-DKMIEPRYQEIPSEEIKRAET--DGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKP  216 (326)
Q Consensus       140 sE~~~~~~~~~~lQLWinLP~~-~k~~~P~Y~~~~~~~iP~~~~--~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~  216 (326)
                      +=.|.  +++++  +||.-+-. .++.+|.-.--..+++|...-  .+...|++..+        ...-+..+--+++++
T Consensus       128 ~~~N~--~~Ar~--l~V~k~y~~~~g~~p~~~v~~~~dv~~~~~~g~~~~~r~l~p~--------~~~~d~~~~~~t~~P  195 (266)
T 4e2q_A          128 SLDCV--ESATL--VVFERRYEYLGSHTTELIVGSTDKQPLLETPGEVFELRKLLPM--------SVAYDFNIHTMDFQP  195 (266)
T ss_dssp             EEEES--SCEEE--EEEEEECCCCTTCCCCCEEEEGGGSCCBCCTTCCSEEEESSCC--------STTCSEEEEEEEECT
T ss_pred             EEEeC--CCEEE--EEEEeEeeeCCCCCCceeeCcHhHCCCcccCCCcEEEEEccCc--------ccccceEEEEEEECC
Confidence            66674  34544  36632111 123445433222334444432  24567776543        124456666779999


Q ss_pred             CCeEEEecCCCCeEEEEEeecceEEcC-cCceeecCccEEEEcCCCeEEEEecCCCCeEEEEE
Q 020448          217 RAQIHQSIPETWNAFVYTIEGEGVFGT-VNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLI  278 (326)
Q Consensus       217 g~~~~~~~p~~~~~~lyVl~G~~~i~g-~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~  278 (326)
                      |+.+-+.--..+.--+||++|.+.+.- .+...+++||.+.+.++..=.+.+.+++++++||.
T Consensus       196 G~~~p~~e~H~~eh~~~vL~G~g~y~l~~~~~~V~~GD~i~~~~~~~h~~~n~G~e~~~yl~y  258 (266)
T 4e2q_A          196 GEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAALGKTRSRYLLY  258 (266)
T ss_dssp             TCBCSSCCCCSCCEEEEEEECEEEEEETTEEEEEETTCEEEECTTCCEEEEEESSSCEEEEEE
T ss_pred             CcCcCCceEcccceEEEEEeceEEEEECCEEEEecCCCEEEECCCCcEEEEeCCCCCEEEEEE
Confidence            997543222234578999999988742 23478999999999977666666766678888875

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=98.20  E-value=0.00013  Score=68.31  Aligned_cols=185  Identities=18%  Similarity=0.132  Sum_probs=107.7

Q ss_pred             cCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCCCC--
Q 020448           85 SVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSD--  162 (326)
Q Consensus        85 ~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~~~--  162 (326)
                      .+.++...+.|.|.+.+-+-||++|+++..- -|..-.+++||+-++.+|  +.|+=.|.++ .++++  |+..|...  
T Consensus        52 ~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~-~~~~~~l~~Gd~~~~p~~--~~H~~~n~~~-~~~~~--~~~~p~~~~~  125 (337)
T 1y3t_A           52 SGGKGDAFPLHVHKDTHEGILVLDGKLELTL-DGERYLLISGDYANIPAG--TPHSYRMQSH-RTRLV--SYTMKGNVAH  125 (337)
T ss_dssp             EECTTCEEEEEECTTCCEEEEEEESCEEEEE-TTEEEEECTTCEEEECTT--CCEEEEECST-TEEEE--EEEETTSSTH
T ss_pred             EeCCCCCCCceeCCCceEEEEEEECEEEEEE-CCEEEEECCCCEEEECCC--CcEEEEECCC-CeEEE--EEECCCCHHH
Confidence            4566667889999977788899999998873 366678999999999875  7788888654 45443  33233221  


Q ss_pred             ----------CCCCC-----------------Ccccc-C-------------CCcccee--------------cCCCeEE
Q 020448          163 ----------KMIEP-----------------RYQEI-P-------------SEEIKRA--------------ETDGVEV  187 (326)
Q Consensus       163 ----------k~~~P-----------------~Y~~~-~-------------~~~iP~~--------------~~~g~~~  187 (326)
                                ....|                 +|... .             .+.+|..              ...+..+
T Consensus       126 ~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~a~~~gv~~~~~~~~~~~~~~~~~~~l~~~~~~~v~r~~~~~~~~~~g~~~  205 (337)
T 1y3t_A          126 LYSVIGNPYDHAEHPPYASEEVSNERFAEAAAVATIVFLDEAKPACSAKLAELTELPDGAVPYVLESGEGDRLLTGDQLH  205 (337)
T ss_dssp             HHHHHSEECSCSSCCSSCCCCCTTCTTGGGTSSCEECCCCCCCSSCSCEECCBCSCCSSSCCEEECTTCSEEEEETTEEE
T ss_pred             HHHHhCcccccccCCCCCCcccCHHHHHHhHhhccEEEcCCCCccccccchhhhcCCCCCCCEEECCCCcCEEEECCcEE
Confidence                      00111                 11110 0             0001100              0012223


Q ss_pred             EEEeCCCCCCcCcccccCccEEEEEEECC-CCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEE
Q 020448          188 RIIAGESMGVRSPVYTRTPTMFLDFTLKP-RAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLS  264 (326)
Q Consensus       188 rViaG~~~g~~sp~~~~~~~~~~di~L~~-g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~  264 (326)
                      ++++..       ....... .+.+.+.+ |.....-...+..-++||++|++++  ++ +...+.+||.+.+..+..-.
T Consensus       206 ~~l~~~-------~~~~~~~-~~~~~~~p~g~~~~~h~H~~~~e~~~vl~G~~~~~i~~-~~~~l~~GD~~~ip~~~~H~  276 (337)
T 1y3t_A          206 RIVAAQ-------KNTDGQF-IVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWTDG-QEIQLNPGDFLHVPANTVHS  276 (337)
T ss_dssp             EEEECG-------GGTTTSC-EEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEETT-EEEEECTTCEEEECTTCCEE
T ss_pred             EEEecc-------cccCCcE-EEEEEEcCCCCCCCCcCCCCCcEEEEEEeCEEEEEECC-EEEEECCCCEEEECCCCeEE
Confidence            333311       1111122 22334444 4433221222235789999999876  45 23789999999999877777


Q ss_pred             EEecCCCCeEEEEEeeccCCC
Q 020448          265 AWNRSSKQLRFVLIAGQPLNE  285 (326)
Q Consensus       265 i~a~~~~~a~~LL~~G~pl~e  285 (326)
                      +.+.++ .+++|++...+.-+
T Consensus       277 ~~n~~~-~~~~l~v~~~~~~~  296 (337)
T 1y3t_A          277 YRLDSH-YTKMVGVLVPGLFE  296 (337)
T ss_dssp             EEECSS-SEEEEEEEESSTTT
T ss_pred             EEECCC-CeEEEEEEcCccHH
Confidence            777654 78988886655433

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=98.19  E-value=7.9e-05  Score=71.69  Aligned_cols=188  Identities=18%  Similarity=0.144  Sum_probs=114.2

Q ss_pred             ccCCCCCCCCCCCCCCceEEEEEeeceEEE--ecCCCC--eeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccC
Q 020448           84 FSVSPPAGFPDHPHRGFETVTYMLQGGITH--QDFSGH--KGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLS  159 (326)
Q Consensus        84 ~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H--~DS~Gn--~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP  159 (326)
                      ..+.|+...++|.|. .+-+.||++|+++.  .|.-|.  ...|++||+-.+.+|  +.|.-.+.. ..++.+-+ ++.+
T Consensus        84 ~~l~pg~~~~~H~H~-~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~~ip~g--~~H~~~n~~-~~~~~~~v-~~~~  158 (385)
T 1j58_A           84 MRLKPGAIRELHWHK-EAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSG--LPHSIQALE-EGAEFLLV-FDDG  158 (385)
T ss_dssp             EEECTTCEEEEEEES-SCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTT--CCEEEEEEE-EEEEEEEE-ESCT
T ss_pred             EEECCCCCCCCccCC-hheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEEEECCC--CeEEEEECC-CCEEEEEE-ECCC
Confidence            345666667899999 56778999998765  444566  348999999988875  667766653 23443322 2211


Q ss_pred             CCCCC-----------------------CCC-Ccccc----------------------------------CCCccceec
Q 020448          160 SSDKM-----------------------IEP-RYQEI----------------------------------PSEEIKRAE  181 (326)
Q Consensus       160 ~~~k~-----------------------~~P-~Y~~~----------------------------------~~~~iP~~~  181 (326)
                      . ...                       .++ .+..+                                  ...+.+...
T Consensus       159 ~-~~~~~~~~~~~~~~~~p~evla~~~~vs~~~~~~l~~~~~~i~~~~~p~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~  237 (385)
T 1j58_A          159 S-FSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEGPNGEVPYPFTYRLLEQEPIE  237 (385)
T ss_dssp             T-CCGGGEEEHHHHHHTSCHHHHHHHHTCCTGGGTTSCSSCCSEECCCCCCCHHHHCCCCTTCCCSSCSEEEGGGSCCEE
T ss_pred             C-ccccchhhhhhhhhcccHHHHHHHhCCCHHHHHhcccccceEeccCCCCccccccccCCCCCCCCCeeeecccCCCee
Confidence            0 000                       000 00000                                  000111112


Q ss_pred             CCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--c---C-cCceeecCccEE
Q 020448          182 TDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--G---T-VNSSAVSAHNVL  255 (326)
Q Consensus       182 ~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~---g-~~~~~l~~~d~~  255 (326)
                      ..++.++++.+..    .+  ....+.++.+.|++|+........+..-++||++|++++  +   | .+...+.+||.+
T Consensus       238 ~~~g~~~~~~~~~----~~--~~~~~~~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~  311 (385)
T 1j58_A          238 SEGGKVYIADSTN----FK--VSKTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVG  311 (385)
T ss_dssp             CSSEEEEEESTTT----ST--TCCSCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEE
T ss_pred             CCCceEEEeeccc----CC--cccceEEEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEE
Confidence            2234555554431    11  123577888899999987754444446899999999865  3   1 123679999999


Q ss_pred             EEcCCCeEEEEecCCCCeEEEEEeeccC
Q 020448          256 VLSLGDGLSAWNRSSKQLRFVLIAGQPL  283 (326)
Q Consensus       256 ~l~~g~~l~i~a~~~~~a~~LL~~G~pl  283 (326)
                      .+..+..-.+.+.+++++++|.+...+.
T Consensus       312 ~ip~~~~H~~~n~~~~~~~~l~v~~~~~  339 (385)
T 1j58_A          312 YVPFAMGHYVENIGDEPLVFLEIFKDDH  339 (385)
T ss_dssp             EECTTCBEEEEECSSSCEEEEEEESSSS
T ss_pred             EECCCCeEEEEECCCCCEEEEEEECCCC
Confidence            9998877777776567889888876653

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=98.15  E-value=7.8e-05  Score=67.38  Aligned_cols=186  Identities=17%  Similarity=0.227  Sum_probs=113.3

Q ss_pred             CCceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCe
Q 020448           58 GDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGI  137 (326)
Q Consensus        58 G~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI  137 (326)
                      ..|+..+.+.....  ..+....+  .++.|++-||.|-|.|.|. +|||+|.+.  |.   .+.+.+|+.-+..+|  .
T Consensus        26 ~~Gv~~~~L~~~~~--e~g~~~~l--vr~~pG~~~p~H~H~g~Ee-~~VL~G~f~--d~---~~~~~~Gd~~~~P~g--~   93 (223)
T 3o14_A           26 MKGVERRMLDRIGG--EVARATSI--VRYAPGSRFSAHTHDGGEE-FIVLDGVFQ--DE---HGDYPAGTYVRNPPT--T   93 (223)
T ss_dssp             STTEEEEEEEEESS--SSCEEEEE--EEECTTEECCCEECTTCEE-EEEEEEEEE--ET---TEEEETTEEEEECTT--C
T ss_pred             CCCEEEEEeecCCC--ccccEEEE--EEECCCCCcccccCCCCEE-EEEEEeEEE--EC---CeEECCCeEEEeCCC--C
Confidence            35787777644321  12333333  2456778899999998776 799999997  32   579999999888877  5


Q ss_pred             EEEeeeCCCCceeEEEEEeccCCCCCCCCCCccccCCCccceec--CCCeEEEEEeCCCCCCcCcccccCccEEEEEEEC
Q 020448          138 VHSEMPAGEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAE--TDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLK  215 (326)
Q Consensus       138 ~HsE~~~~~~~~~~lQLWinLP~~~k~~~P~Y~~~~~~~iP~~~--~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~  215 (326)
                      .|.-.. .++    --||+.+=   .+.+..-+++..+..+-..  ..|..+..+           .....-.+.-++++
T Consensus        94 ~H~p~a-~~g----c~~~vk~~---~~~~~d~~~v~~~~~~W~~~~~~Gv~~~~L-----------~~~~~E~v~l~r~~  154 (223)
T 3o14_A           94 SHVPGS-AEG----CTIFVKLW---QFDPADRTQFSKNMEAELGAPVEGISTSLL-----------HEDERETVTHRKLE  154 (223)
T ss_dssp             EECCEE-SSC----EEEEEEES---CSCTTCCBCEEEETTTTCCCCBTTEEEEEE-----------EECSSCEEEEEEEC
T ss_pred             ccccEe-CCC----CEEEEEec---CCCCCcccccccchhcccccCCCCeEEEEE-----------ecCCCcEEEEEEEC
Confidence            787554 222    33565431   1111111112111111111  123333332           22222233446889


Q ss_pred             CCCeEEEecCCCCeEEEEEeecceEEcCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEee
Q 020448          216 PRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAG  280 (326)
Q Consensus       216 ~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G  280 (326)
                      +|+.+......+..  +|||+|++..++   ..+.+|+-+++..+....+.+. +++|.+.+=.|
T Consensus       155 ~G~~~~~~~hgG~E--ilVL~G~~~d~~---~~~~~GsWlR~P~gs~h~~~ag-~~g~~i~~k~g  213 (223)
T 3o14_A          155 PGANLTSEAAGGIE--VLVLDGDVTVND---EVLGRNAWLRLPEGEALSATAG-ARGAKIWMKTG  213 (223)
T ss_dssp             TTCEEEECCSSCEE--EEEEEEEEEETT---EEECTTEEEEECTTCCEEEEEE-EEEEEEEEEES
T ss_pred             CCCccCCCCCCcEE--EEEEEeEEEECC---ceECCCeEEEeCCCCccCcEEC-CCCeEEEEEec
Confidence            99998765553333  699999999888   8999999999998888888773 35777666444

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=97.97  E-value=0.00013  Score=71.19  Aligned_cols=202  Identities=13%  Similarity=0.054  Sum_probs=125.3

Q ss_pred             CCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeee-CCCCceeEE
Q 020448           74 SLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMP-AGEGVQNGL  152 (326)
Q Consensus        74 ~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~-~~~~~~~~l  152 (326)
                      ...|=+.+....+.|+.-.+.|-|...| +-||++|+-..-.--|..-.+++||+-..-+  |..|+=.| .+++++.+|
T Consensus       118 ~~t~~L~a~~~~l~PG~~~~~HrH~~~e-v~~IleG~G~~t~v~G~~~~~~~GD~i~~P~--g~~H~~~N~~gde~l~~l  194 (394)
T 3bu7_A          118 AACGWLFSGIQTMKAGERAGAHRHAASA-LRFIMEGSGAYTIVDGHKVELGANDFVLTPN--GTWHEHGILESGTECIWQ  194 (394)
T ss_dssp             CSBTTBEEEEEEECTTCBCCCEEESSCE-EEEEEECSCEEEEETTEEEEECTTCEEEECT--TCCEEEEECTTCCCEEEE
T ss_pred             ccCCeeEEEEEEECCCCCcCCccCCcce-EEEEEEeeEEEEEECCEEEEEcCCCEEEECc--CCCEEEEcCCCCCCEEEE
Confidence            4577777777888899889999999986 8999999875533347788999999988865  56777778 777778776


Q ss_pred             --E---EEeccCCC--------CCC-CCCC------ccc--c-------CCCccce--------------------ecCC
Q 020448          153 --Q---LWINLSSS--------DKM-IEPR------YQE--I-------PSEEIKR--------------------AETD  183 (326)
Q Consensus       153 --Q---LWinLP~~--------~k~-~~P~------Y~~--~-------~~~~iP~--------------------~~~~  183 (326)
                        +   +|-.|...        .+. ..|.      |..  +       ....-|.                    ....
T Consensus       195 ~v~d~Pl~~~l~~~f~e~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~sP~~~y~w~~~~~~L~~~~~~~~~~~~  274 (394)
T 3bu7_A          195 DGLDIPLTNCLEANFYEVHPNDYQTTDIPLNDSPLTYGGPALLPQLDKWDKPYSPLLKYSWEPTYEALLNYAKASDGSPY  274 (394)
T ss_dssp             EEECHHHHHHTTCCCEEECTTSSCCCCCCTTHHHHHHCSTTEEESSCCCCCSSCSCCEECHHHHHHHHHHHHTTCCCBTT
T ss_pred             EcccchhhhhcCccccccCcccccCccCCccchhhhhcCcccccccccccCCCCCcEEecHHHHHHHHHHhhhccCcCcC
Confidence              2   33333221        000 0111      000  0       0000111                    1111


Q ss_pred             CeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCC
Q 020448          184 GVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGD  261 (326)
Q Consensus       184 g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~  261 (326)
                      +.....+.....|  +.  ....+......|.+|.....-.. ......||++|+..+  +| +...+++||.+.+..+.
T Consensus       275 ~~~~l~l~nP~~g--~~--~~~tl~~~~~~l~PG~~~~~HrH-~~~~v~~VleG~G~~~V~g-e~~~~~~GD~~~iP~g~  348 (394)
T 3bu7_A          275 DGLILRYTNPQTG--GH--PMLTMGASMQMLRPGEHTKAHRH-TGNVIYNVAKGQGYSIVGG-KRFDWSEHDIFCVPAWT  348 (394)
T ss_dssp             TBEEEEECCTTTS--SC--SSSSCEEEEEEECTTCBCCCEEE-SSCEEEEEEECCEEEEETT-EEEEECTTCEEEECTTC
T ss_pred             CceEEEEeCCCCC--CC--CCCeeeEEEEEECCCCcCCCccc-CCcEEEEEEeCeEEEEECC-EEEEEeCCCEEEECCCC
Confidence            2334444443222  11  12235556678899986432221 234689999998654  55 23689999999999888


Q ss_pred             eEEEEecC-CCCeEEEEEeeccCC
Q 020448          262 GLSAWNRS-SKQLRFVLIAGQPLN  284 (326)
Q Consensus       262 ~l~i~a~~-~~~a~~LL~~G~pl~  284 (326)
                      .-.+.+.+ ++++.++.+.-.|+.
T Consensus       349 ~H~~~N~g~~e~~~ll~i~D~Pl~  372 (394)
T 3bu7_A          349 WHEHCNTQERDDACLFSFNDFPVM  372 (394)
T ss_dssp             CEEEEECCSSCCEEEEEEESHHHH
T ss_pred             eEEeEeCCCCCCeEEEEeeCHHHH
Confidence            77777754 467888888766653

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=97.68  E-value=0.0021  Score=63.07  Aligned_cols=221  Identities=15%  Similarity=0.158  Sum_probs=126.7

Q ss_pred             EeecccCCCCCCCCCCCCCCceEEEEEeeceEEEe--cC-CCCeeeeeCCcEEEEecCCCeEEEeeeCC-CCceeEEEEE
Q 020448           80 MLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQ--DF-SGHKGTIHTGDVQWMTAGRGIVHSEMPAG-EGVQNGLQLW  155 (326)
Q Consensus        80 ~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~--DS-~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~-~~~~~~lQLW  155 (326)
                      .+-...+.|+.-.++| |.+-+-+.||++|+....  |+ -+....+++||+-..-+  |+.|.-.|.. ++++.+|-++
T Consensus        50 s~~~~~l~PGg~~~pH-h~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP~--G~~H~~~N~gg~e~l~~l~~~  126 (416)
T 1uij_A           50 RIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPA--GTTYYLVNPHDHQNLKMIWLA  126 (416)
T ss_dssp             EEEEEEECTTEEEEEE-EESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEEEECT--TCEEEEEECCSSCCEEEEEEE
T ss_pred             EEEEEEeccCcCcccc-cCCCceEEEEEeeEEEEEEEECCCCeEEEecCCCEEEECC--CCeEEEEecCCCCCEEEEEEe
Confidence            3445567777678999 999999999999987764  33 22346799999998887  5899999984 7888888887


Q ss_pred             e--ccCCCCC-----CCCC---Ccccc-----------CCC---ccc-eec-----CCCeEEEEEeCC------------
Q 020448          156 I--NLSSSDK-----MIEP---RYQEI-----------PSE---EIK-RAE-----TDGVEVRIIAGE------------  193 (326)
Q Consensus       156 i--nLP~~~k-----~~~P---~Y~~~-----------~~~---~iP-~~~-----~~g~~~rViaG~------------  193 (326)
                      .  |.|....     ...|   -+..+           +.+   .++ ..+     ..+.-+|+--++            
T Consensus       127 ~~~~~pg~~~~f~l~g~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~~~~~~g~Iv~~~~~~~~~~~~~~~~~~  206 (416)
T 1uij_A          127 IPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLSRRAKSSS  206 (416)
T ss_dssp             EESSBTTBCCEEESSCBSSCCCGGGGSCHHHHHHHHTSCHHHHHHHHTCTTCGGGSBSSSEEECCHHHHHHHTSSCBCCC
T ss_pred             ccCCCCCcceeeeecCCcccchhhhcCCHHHHHHHhCcCHHHHHhhhhccccccccCcceEEEeCCcccchhhhcccccC
Confidence            4  1221100     0000   00000           000   011 000     012222211000            


Q ss_pred             CCC-----------------------------CcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc--
Q 020448          194 SMG-----------------------------VRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--  242 (326)
Q Consensus       194 ~~g-----------------------------~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--  242 (326)
                      ..|                             .+=|.-....+.+..+.|++|+-...-..+.-.-++||++|++.+.  
T Consensus       207 ~~g~~~~~~~~~l~~~~p~~~~~~G~~~~~~~~~~P~L~~l~is~a~~~l~~g~~~~pH~h~~A~Ei~~V~~G~~~v~~v  286 (416)
T 1uij_A          207 RKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELV  286 (416)
T ss_dssp             GGGGGCSSSCEETTSSCCSEECSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEE
T ss_pred             CCCCCCcccceeccccCCCccCCCceEEEEChHHCccchhcCcceEEEEEcCCcEecceEcCCCcEEEEEEeeEEEEEEE
Confidence            000                             0001111123566788999998665444344468999999998873  


Q ss_pred             ---Cc----------C---c--eeecCccEEEEcCCCeEEEEecCCCCeEEEEEeecc-CCCceeeeC--CcccCc--HH
Q 020448          243 ---TV----------N---S--SAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP-LNEPVVQYG--PFVMNS--QA  299 (326)
Q Consensus       243 ---g~----------~---~--~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p-l~epi~~~G--pFVmnt--~~  299 (326)
                         +.          +   .  ..|.+||+.++..|-...+.+.  +++++|.|.-.+ .+++...-|  .=|++.  .+
T Consensus       287 ~~~g~~~~~~~~~~~~~~~~~~~~l~~Gdv~vvP~g~~h~~~n~--~~~~~l~f~~~~~~~~~~~laG~~~sv~~~~p~~  364 (416)
T 1uij_A          287 GIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNAT--SNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQ  364 (416)
T ss_dssp             EEC------------CCEEEEEEEEETTCEEEECTTCCEEEEES--SSEEEEEEEETCTTCCEEESSSSTTBSGGGSCHH
T ss_pred             cCCCccccccccccccceEEEEEEecCCcEEEECCCCeEEEEcC--CCeEEEEEEcCCCCCcceecccchhhHHHhCCHH
Confidence               20          0   1  2689999999998877777775  578888887544 344443333  223322  45


Q ss_pred             HHHHHH
Q 020448          300 EIDQTI  305 (326)
Q Consensus       300 ei~~A~  305 (326)
                      -++.||
T Consensus       365 vla~af  370 (416)
T 1uij_A          365 VQELAF  370 (416)
T ss_dssp             HHHHHS
T ss_pred             HHHHHH
Confidence            555554

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=97.65  E-value=0.0036  Score=61.73  Aligned_cols=75  Identities=17%  Similarity=0.142  Sum_probs=59.0

Q ss_pred             EEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEec--CC-CCeeeeeCCcEEEEecCCCeEEEeeeCC-CCceeEEEE
Q 020448           79 LMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQD--FS-GHKGTIHTGDVQWMTAGRGIVHSEMPAG-EGVQNGLQL  154 (326)
Q Consensus        79 l~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~D--S~-Gn~~~i~~GdvQwMtAGsGI~HsE~~~~-~~~~~~lQL  154 (326)
                      +.+-...+.|+.-.++| |.+-+-+.||++|+.....  +- +....|++|||-..-+|  +.|.-.|.. +.++.+|-+
T Consensus        61 ~s~~~~~l~PGg~~~pH-h~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G--~~H~~~N~g~~e~l~~l~~  137 (434)
T 2ea7_A           61 YRVVEFKSKPNTLLLPH-HADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQKIPAG--TTFFLVNPDDNENLRIIKL  137 (434)
T ss_dssp             CEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTT--CEEEEEECCSSCCEEEEEE
T ss_pred             EEEEEEEecCCcCccCc-cCCCceEEEEEecEEEEEEEeCCCCEEEEeCCCCEEEECCC--ccEEEEeCCCCCCeEEEEE
Confidence            34445567888778999 9999999999999977654  21 23467999999998885  899999986 678888888


Q ss_pred             Ee
Q 020448          155 WI  156 (326)
Q Consensus       155 Wi  156 (326)
                      ..
T Consensus       138 ~~  139 (434)
T 2ea7_A          138 AI  139 (434)
T ss_dssp             EE
T ss_pred             ec
Confidence            74

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=97.64  E-value=6.5e-05  Score=58.12  Aligned_cols=71  Identities=15%  Similarity=0.100  Sum_probs=57.7

Q ss_pred             ccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCC-CeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEe
Q 020448           84 FSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSG-HKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWI  156 (326)
Q Consensus        84 ~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~G-n~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWi  156 (326)
                      ..+.|+..+++|.|.+-+-+.||++|+++-...-| ..-.+.+||+-|..+|  +.|.-.|.++.+++++=+.+
T Consensus        23 ~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~~~~l~~Gd~~~~p~~--~~H~~~N~g~~~~~~l~v~~   94 (97)
T 2fqp_A           23 WRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYTRPEG--VEHNVINPSDTEFVFVEIEI   94 (97)
T ss_dssp             EEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEEEEEECTTCCEEECTT--CEEEEECCSSSCEEEEEEEE
T ss_pred             EEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCEEEEEcCCCEEEeCCC--CcccCEeCCCCcEEEEEEEE
Confidence            34567777889999998779999999998776544 5789999999999985  89999998777777765554

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=97.55  E-value=8e-05  Score=60.94  Aligned_cols=88  Identities=23%  Similarity=0.295  Sum_probs=63.2

Q ss_pred             CceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCC-CCeeeeeCCcEEEEecCCCe
Q 020448           59 DGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFS-GHKGTIHTGDVQWMTAGRGI  137 (326)
Q Consensus        59 ~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~-Gn~~~i~~GdvQwMtAGsGI  137 (326)
                      .|+.++.++....   -++-+.+-...+.|+..+++|-|.+.|.+ ||++|+++...+. |....+++||+-|+.+  |+
T Consensus        22 ~g~~~~~l~~~~~---~~~~~~~~~~~~~pg~~~~~H~H~~~e~~-~vl~G~~~~~~~~~~~~~~l~~Gd~~~ip~--~~   95 (145)
T 3ht1_A           22 KETTHRKLIDTPD---GADRFVLTEFEVSPNGSTPPHFHEWEHEI-YVLEGSMGLVLPDQGRTEEVGPGEAIFIPR--GE   95 (145)
T ss_dssp             EEEEEEEEECGGG---TCCSEEEEEEEEEEEEECCCEECSSCEEE-EEEEECEEEEEGGGTEEEEECTTCEEEECT--TC
T ss_pred             CCcEEEEEEccCC---CCCcEEEEEEEECCCCcCCCccCCCceEE-EEEEeEEEEEEeECCEEEEECCCCEEEECC--CC
Confidence            5677777766432   12222233344556667899999999997 9999999998433 4567899999999987  58


Q ss_pred             EEEeeeCCCCceeEE
Q 020448          138 VHSEMPAGEGVQNGL  152 (326)
Q Consensus       138 ~HsE~~~~~~~~~~l  152 (326)
                      .|+-.+.++.+++.+
T Consensus        96 ~H~~~~~~~~~~~~l  110 (145)
T 3ht1_A           96 PHGFVTGPGQTCRFL  110 (145)
T ss_dssp             CBEEECCTTCCEEEE
T ss_pred             eEEeEcCCCCCEEEE
Confidence            999888776666654

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=97.51  E-value=0.00059  Score=55.84  Aligned_cols=92  Identities=21%  Similarity=0.282  Sum_probs=68.4

Q ss_pred             ceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEE
Q 020448           60 GAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVH  139 (326)
Q Consensus        60 g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~H  139 (326)
                      ++..+.++.....  -+.++.+-...+.|+..+++|.|.+.+-+.||++|+++.... |..-.|++||+-++.+|  ..|
T Consensus        40 ~~~~~~ll~p~~~--~~~~~~~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~-~~~~~l~~Gd~i~i~~~--~~H  114 (133)
T 1o4t_A           40 EVEMAHLLSKEAM--HNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDN-GKDVPIKAGDVCFTDSG--ESH  114 (133)
T ss_dssp             EEEEEECSCTTTT--TTSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEET-TEEEEEETTEEEEECTT--CEE
T ss_pred             eEEEEEccChhhC--CCceEEEEEEEECCCCccCceECCCccEEEEEEeCEEEEEEC-CEEEEeCCCcEEEECCC--CcE
Confidence            4555546664321  144555556667777778899999988899999999988754 56789999999999987  789


Q ss_pred             EeeeCCCCceeEEEEEe
Q 020448          140 SEMPAGEGVQNGLQLWI  156 (326)
Q Consensus       140 sE~~~~~~~~~~lQLWi  156 (326)
                      +-.|..+.++..+-+.+
T Consensus       115 ~~~n~~~~~~~~l~v~~  131 (133)
T 1o4t_A          115 SIENTGNTDLEFLAVII  131 (133)
T ss_dssp             EEECCSSSCEEEEEEEE
T ss_pred             EeEECCCCCEEEEEEEE
Confidence            98887777777765544

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=97.51  E-value=0.007  Score=59.90  Aligned_cols=193  Identities=14%  Similarity=0.141  Sum_probs=111.9

Q ss_pred             EEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEe--cCC-CCeeeeeCCcEEEEecCCCeEEEeeeCC-CCceeEEEE
Q 020448           79 LMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQ--DFS-GHKGTIHTGDVQWMTAGRGIVHSEMPAG-EGVQNGLQL  154 (326)
Q Consensus        79 l~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~--DS~-Gn~~~i~~GdvQwMtAGsGI~HsE~~~~-~~~~~~lQL  154 (326)
                      +.+-...+.|+.-.++| |.+-+-+-||++|+....  |+- +....+++||+-...+|  +.|.=.|.. +.++..+-+
T Consensus        86 ~s~~~~~l~Pgg~~~pH-h~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~~P~G--~~H~~~N~g~~~~l~~l~v  162 (445)
T 2cav_A           86 YRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAG--TPFYLINPDNNQNLRILKF  162 (445)
T ss_dssp             EEEEEEEECSSEEEEEE-EESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTT--CCEEEEECCSSCCEEEEEE
T ss_pred             EEEEEEEECCCcCccCc-CCCCceEEEEEeCEEEEEEEeCCCCEEEEecCCCEEEECCC--CcEEEEECCCCCCEEEEEE
Confidence            34444567777667899 888888999999997654  221 23567999999999985  789999886 567766655


Q ss_pred             EeccCCCCCCCCCCccc------------------------cCCC---ccceec-CCCeEEEEEeCC------------C
Q 020448          155 WINLSSSDKMIEPRYQE------------------------IPSE---EIKRAE-TDGVEVRIIAGE------------S  194 (326)
Q Consensus       155 WinLP~~~k~~~P~Y~~------------------------~~~~---~iP~~~-~~g~~~rViaG~------------~  194 (326)
                      .-  |....+ ..+...                        ++.+   .++..+ ..+.-+|+=-+.            .
T Consensus       163 ~~--~~~~pg-~~~~F~laG~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~~~~~~~g~Iv~~~~~~~~~~~~~~~~~~~  239 (445)
T 2cav_A          163 AI--TFRRPG-TVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMPKDQIQEISKHAQSSSR  239 (445)
T ss_dssp             EE--CCSSTT-CCCEEESSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHTTSCCSSSSEEECCCC--------------
T ss_pred             ec--cCCCCC-ceeeeeccCCCchhhhhhcCCHHHHHHHhCCCHHHHHhhhcccCCCCcEEEeCCcchhhhcccccccCC
Confidence            43  222111 000000                        0000   011000 001111111000            0


Q ss_pred             CCC-----------cCcc------------------cccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc---
Q 020448          195 MGV-----------RSPV------------------YTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG---  242 (326)
Q Consensus       195 ~g~-----------~sp~------------------~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~---  242 (326)
                      .|.           ..|.                  -....+.+..+.|++|+-..--..+.-.-++||++|++.+.   
T Consensus       240 ~g~~~~~~~~~l~~~~p~~~~~~G~v~~~~~~~fP~L~~l~is~~~v~l~pg~m~~PH~hp~A~ei~~V~~G~~~v~vv~  319 (445)
T 2cav_A          240 KTLSSQDKPFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVG  319 (445)
T ss_dssp             ------CCCEETTSSCCSEESSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEE
T ss_pred             CCCCCcccceeccccCCCccCCCceEEEeChHHCcccccCCCceEEEEeeCCceeeeEECCCCcEEEEEEeeEEEEEEEe
Confidence            000           0011                  11125677888999998665444345578999999998874   


Q ss_pred             --Cc--------C----ceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          243 --TV--------N----SSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       243 --g~--------~----~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                        +.        .    ...|.+||+.++..+-.....+.  ++..++.|.
T Consensus       320 ~~~~~~~~~~g~~~~~~~~~l~~GdV~vvP~g~~h~~~n~--~~~~~v~f~  368 (445)
T 2cav_A          320 LEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAA--SDLNMVGIG  368 (445)
T ss_dssp             C-----------CCEEEEEEECTTCEEEECTTCCEEEEES--SSEEEEEEE
T ss_pred             CCCcccccccCcceEEEEeEecCCcEEEEcCCcEEEEEcC--CCeEEEEEE
Confidence              10        1    13489999999998776666664  468888775

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=97.36  E-value=0.0013  Score=52.58  Aligned_cols=71  Identities=17%  Similarity=0.208  Sum_probs=57.5

Q ss_pred             ccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEe
Q 020448           84 FSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWI  156 (326)
Q Consensus        84 ~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWi  156 (326)
                      ..+.|+..+++|.|.+.+-+.||++|+++....-|..-.+++||+-++.+|  ..|+-.|..+.++..+-+..
T Consensus        44 ~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~i~~~--~~H~~~n~~~~~~~~l~v~~  114 (125)
T 3h8u_A           44 WHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIVTHLKAGDIAIAKPG--QVHGAMNSGPEPFIFVSVVA  114 (125)
T ss_dssp             EEECTTCEECCC-CTTCEEEEEEEECEEEEECSTTCEEEEETTEEEEECTT--CCCEEEECSSSCEEEEEEEE
T ss_pred             EEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCCeEEEeCCCCEEEECCC--CEEEeEeCCCCCEEEEEEEC
Confidence            456777788999999878888999999999865677889999999887764  78998888777777766654

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=97.32  E-value=0.0016  Score=52.18  Aligned_cols=91  Identities=16%  Similarity=0.184  Sum_probs=67.8

Q ss_pred             ceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEE
Q 020448           60 GAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVH  139 (326)
Q Consensus        60 g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~H  139 (326)
                      |+..+|+++.....  .||.+. ...+.++..+++|-|...| +.|+++|++...- -|..-.+++||+-|+.+|  ..|
T Consensus        18 g~~~~~l~~~~~~~--~~~~~~-~~~~~pg~~~~~H~H~~~E-i~~v~~G~~~~~i-~~~~~~l~~Gd~~~i~~~--~~H   90 (128)
T 4i4a_A           18 DLDGSRLLPWEGLN--TPFGGA-WCIVRPETKSFRHSHNEYE-LFIVIQGNAIIRI-NDEDFPVTKGDLIIIPLD--SEH   90 (128)
T ss_dssp             TEEEEECCCCTTCC--CSSEEE-EEEECTTEECCCBCCSSEE-EEEEEESEEEEEE-TTEEEEEETTCEEEECTT--CCE
T ss_pred             CCceEeecCccccC--CCcEEE-EEEECCCCccCCEecCCeE-EEEEEeCEEEEEE-CCEEEEECCCcEEEECCC--CcE
Confidence            67888887754322  444332 3345566678999997655 7899999988765 245678999999999987  789


Q ss_pred             EeeeCCCCceeEEEEEec
Q 020448          140 SEMPAGEGVQNGLQLWIN  157 (326)
Q Consensus       140 sE~~~~~~~~~~lQLWin  157 (326)
                      +-.+..+.++.++=||++
T Consensus        91 ~~~~~~~~~~~~~~i~f~  108 (128)
T 4i4a_A           91 HVINNNQEDFHFYTIWWD  108 (128)
T ss_dssp             EEEECSSSCEEEEEEEEC
T ss_pred             EeEeCCCCCEEEEEEEEC
Confidence            988877778888888884

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=97.26  E-value=0.00054  Score=55.36  Aligned_cols=92  Identities=20%  Similarity=0.183  Sum_probs=63.9

Q ss_pred             CceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeE
Q 020448           59 DGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIV  138 (326)
Q Consensus        59 ~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~  138 (326)
                      .|...+.+++......+..++    ..+.|+..+++|.|.+.|+ .||++|+++..-. |..-.+++||+-|+.+|  +.
T Consensus        32 ~g~~~~~l~~~~~~~~~~~~~----~~~~pg~~~~~H~H~~~e~-~~Vl~G~~~~~i~-~~~~~l~~Gd~i~ip~g--~~  103 (126)
T 1vj2_A           32 RGVRKRVLIGLKDAPNFVMRL----FTVEPGGLIDRHSHPWEHE-IFVLKGKLTVLKE-QGEETVEEGFYIFVEPN--EI  103 (126)
T ss_dssp             EEEEEEEEECTTTCSSEEEEE----EEEEEEEEEEEECCSSCEE-EEEEESEEEEECS-SCEEEEETTEEEEECTT--CC
T ss_pred             CCeEEEEEeCCCCCCCEEEEE----EEECCCCcCCceeCCCcEE-EEEEEeEEEEEEC-CEEEEECCCCEEEECCC--Cc
Confidence            567777777655322232222    2344555678899997665 7999999988754 56789999999999985  78


Q ss_pred             EEeeeCCCCceeEEEEEeccCC
Q 020448          139 HSEMPAGEGVQNGLQLWINLSS  160 (326)
Q Consensus       139 HsE~~~~~~~~~~lQLWinLP~  160 (326)
                      |+-.+..++++..  +|+..|.
T Consensus       104 H~~~~~~~~~~~~--l~v~~~~  123 (126)
T 1vj2_A          104 HGFRNDTDSEVEF--LCLIPKE  123 (126)
T ss_dssp             EEEECCSSSCEEE--EEEEEGG
T ss_pred             EEeEeCCCCCEEE--EEEEccC
Confidence            9988876666665  4554444

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=97.26  E-value=0.03  Score=53.35  Aligned_cols=53  Identities=11%  Similarity=0.178  Sum_probs=41.5

Q ss_pred             CCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEee
Q 020448          227 TWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAG  280 (326)
Q Consensus       227 ~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G  280 (326)
                      .+...+||++|+++|  +|.+...|.+||.+.+..+....+.+.+ ..+++|.+..
T Consensus       271 ~~~~~~~vleG~~~i~i~g~~~~~l~~Gd~~~iPag~~h~~~~~~-~~~~~l~~~~  325 (350)
T 1juh_A          271 PGACAFQVQEGRVVVQIGDYAATELGSGDVAFIPGGVEFKYYSEA-YFSKVLFVSS  325 (350)
T ss_dssp             SSCEEEEEEESCEEEEETTSCCEEECTTCEEEECTTCCEEEEESS-SSEEEEEEEE
T ss_pred             CCcEEEEEEeeEEEEEECCeEEEEeCCCCEEEECCCCCEEEEecC-CeEEEEEEec
Confidence            456899999999877  4523478999999999999999998864 3577777654

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=97.16  E-value=0.0011  Score=50.22  Aligned_cols=70  Identities=19%  Similarity=0.218  Sum_probs=54.3

Q ss_pred             cCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccC
Q 020448           85 SVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLS  159 (326)
Q Consensus        85 ~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP  159 (326)
                      .+.|+..+++|-|.+.+-+.||++|++...-. |....+++||+-|+.+|  ..|+-.+..+.++..  +|+..|
T Consensus        34 ~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~-~~~~~l~~Gd~~~ip~~--~~H~~~~~~~~~~~~--~~v~~p  103 (105)
T 1v70_A           34 ALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG-EEEALLAPGMAAFAPAG--APHGVRNESASPALL--LVVTAP  103 (105)
T ss_dssp             EECTTCEEEEECCSSCEEEEEEEESCEEEEET-TEEEEECTTCEEEECTT--SCEEEECCSSSCEEE--EEEEES
T ss_pred             EECCCCcCCccCCCCCcEEEEEEeCEEEEEEC-CEEEEeCCCCEEEECCC--CcEEeEeCCCCCEEE--EEEeCC
Confidence            45666677899999988899999999987654 56788999999999985  689988876566555  455444

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=97.15  E-value=0.007  Score=45.69  Aligned_cols=76  Identities=16%  Similarity=0.243  Sum_probs=55.8

Q ss_pred             ccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448          206 PTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       206 ~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      .+.+..+.+.+|.....-...+..-++||++|++.+  ++ +...+.+||.+.+..+..-.+.+.++++++++.+...|
T Consensus        27 ~~~~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~~-~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~v~~p~  104 (105)
T 1v70_A           27 RMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGE-EEALLAPGMAAFAPAGAPHGVRNESASPALLLVVTAPR  104 (105)
T ss_dssp             TEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETT-EEEEECTTCEEEECTTSCEEEECCSSSCEEEEEEEESC
T ss_pred             ceEEEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEECC-EEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEeCCC
Confidence            466777899999887533333345689999999876  44 23689999999999887777776555678888876544

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=97.10  E-value=0.0012  Score=55.51  Aligned_cols=72  Identities=22%  Similarity=0.146  Sum_probs=57.0

Q ss_pred             cCCCCC-CCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCC
Q 020448           85 SVSPPA-GFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSS  160 (326)
Q Consensus        85 ~~~~~~-GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~  160 (326)
                      .+.|+. ..++|.|.+.+-+-||++|+++..-. |..-.+++||+-++.+| |+.|+-.|.+++++..|  ||..|.
T Consensus        52 ~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~-~~~~~l~~Gd~i~i~~~-~~~H~~~n~~~~~~~~l--~v~~p~  124 (162)
T 3l2h_A           52 QIEPGKESTEYHLHHYEEEAVYVLSGKGTLTME-NDQYPIAPGDFVGFPCH-AAAHSISNDGTETLVCL--VIGQRL  124 (162)
T ss_dssp             EECTTCBSSSSBEESSCCEEEEEEESCEEEEET-TEEEEECTTCEEEECTT-SCCEEEECCSSSCEEEE--EEEECC
T ss_pred             EECCCCcCCCCccCCCCCEEEEEEEEEEEEEEC-CEEEEeCCCCEEEECCC-CceEEeEeCCCCCEEEE--EEECCC
Confidence            456666 48899997777788999999988743 45678999999999999 89999998877777764  554454

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=97.07  E-value=0.0011  Score=56.42  Aligned_cols=92  Identities=18%  Similarity=0.130  Sum_probs=65.3

Q ss_pred             CceEEEEecCCCCCCCCCceEEeecccCCCCCC-CCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCe
Q 020448           59 DGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAG-FPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGI  137 (326)
Q Consensus        59 ~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~G-F~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI  137 (326)
                      .|...+++.+......+..+    ...+.|+.. .+.|-|.+.|-+-||++|+++..-. |..-.|++||+-|+.+|.++
T Consensus        27 ~G~~~~~l~~~~~~~~~~~~----~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~-~~~~~l~~GD~i~ip~~~~~  101 (163)
T 3i7d_A           27 DGRSSLRLGDAGGLSQFGVN----LVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD-QGEHPMVPGDCAAFPAGDPN  101 (163)
T ss_dssp             TTEEEEEHHHHTTCCSEEEE----EEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET-TEEEEECTTCEEEECTTCCC
T ss_pred             CCeEEEEcccCCCCCeEEEE----EEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC-CEEEEeCCCCEEEECCCCCc
Confidence            45654444343322333333    234566653 3799999988889999999987643 45678999999999999999


Q ss_pred             EEEeeeCCCCceeEEEEE
Q 020448          138 VHSEMPAGEGVQNGLQLW  155 (326)
Q Consensus       138 ~HsE~~~~~~~~~~lQLW  155 (326)
                      .|.-.|.++.++++|-+-
T Consensus       102 ~H~~~n~~~~~~~~l~v~  119 (163)
T 3i7d_A          102 GHQFVNRTDAPATFLVVG  119 (163)
T ss_dssp             CBEEECCSSSCEEEEEEE
T ss_pred             ceEEEECCCCCEEEEEEE
Confidence            999999877777765444

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=97.06  E-value=0.0029  Score=60.60  Aligned_cols=197  Identities=15%  Similarity=0.180  Sum_probs=110.6

Q ss_pred             CceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEE-
Q 020448           76 DPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQL-  154 (326)
Q Consensus        76 dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQL-  154 (326)
                      .+-+.+-...+.|+...++|-|.. +-+.||++|+....---|..-.+++||+-++.+|  +.|+-.|.+++++..|-+ 
T Consensus        97 ~~~l~~~~~~l~PG~~~~~H~H~~-~e~~yVl~G~g~~t~v~g~~~~l~~GD~~~iP~g--~~H~~~n~~~~~~~~l~v~  173 (354)
T 2d40_A           97 TATLYAGLQLIMPGEVAPSHRHNQ-SALRFIVEGKGAFTAVDGERTPMNEGDFILTPQW--RWHDHGNPGDEPVIWLDGL  173 (354)
T ss_dssp             SSSCEEEEEEECTTCEEEEEEESS-CEEEEEEECSSCEEEETTEEEECCTTCEEEECTT--SCEEEECCSSSCEEEEEEE
T ss_pred             CCcEEEEEEEECCCCCcCCeecCc-ceEEEEEEEEEEEEEECCEEEEEcCCCEEEECCC--CcEEeEeCCCCCEEEEEEE
Confidence            444444455567776778899975 5688999999754111245778999999998765  679998877666655322 


Q ss_pred             -----------E-eccCCCC-CCC------------------------CCCccccCCCcc-cee----------cCCCeE
Q 020448          155 -----------W-INLSSSD-KMI------------------------EPRYQEIPSEEI-KRA----------ETDGVE  186 (326)
Q Consensus       155 -----------W-inLP~~~-k~~------------------------~P~Y~~~~~~~i-P~~----------~~~g~~  186 (326)
                                 | -..|... ...                        .|-+. ++-++. +.+          ..+|..
T Consensus       174 d~p~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~sp~~~-y~~~~~~~~l~~~~~~~~~~~~~G~~  252 (354)
T 2d40_A          174 DLPLVNILGCGFAEDYPEEQQPVTRKEGDYLPRYAANMLPLRHQTGNSSPIFN-YRYDRSREVLHDLTRLGDADEWDGYK  252 (354)
T ss_dssp             CHHHHHHHTCCCEEECC--CCCCCSCTTTHHHHHSSSEECSSCCCCSSCSCCE-ECHHHHHHHHHHHHTTSCCBTTTBEE
T ss_pred             CchhHhhcCceeeecCccccCcCcCCcchhhhhhccCCCCccccccCCCccee-ccHHHHHHHHHhhhhccccCCCCCeE
Confidence                       1 0111100 000                        00000 000000 000          012344


Q ss_pred             EEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceE--EcCcCceeecCccEEEEcCCCeEE
Q 020448          187 VRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGV--FGTVNSSAVSAHNVLVLSLGDGLS  264 (326)
Q Consensus       187 ~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~--i~g~~~~~l~~~d~~~l~~g~~l~  264 (326)
                      ++++-...   ..++  ...+...-..|++|+....--.. .....||++|+.+  |++ +...+.+||.+.+..+..-.
T Consensus       253 ~~~~np~t---~~~~--~~ti~~~~~~l~pG~~~~~H~h~-~~ev~~v~~G~g~~~v~~-~~~~~~~GD~~~vP~~~~H~  325 (354)
T 2d40_A          253 MRYVNPVT---GGYP--MPSMGAFLQLLPKGFASRVARTT-DSTIYHVVEGSGQVIIGN-ETFSFSAKDIFVVPTWHGVS  325 (354)
T ss_dssp             EEECCTTT---SSCS--SSSCEEEEEEECTTCBCCCBEES-SCEEEEEEEEEEEEEETT-EEEEEETTCEEEECTTCCEE
T ss_pred             EEEeCCCc---CCCC--CCcceeEEEEECCCCCCCceecC-CcEEEEEEeCeEEEEECC-EEEEEcCCCEEEECCCCeEE
Confidence            44432211   1111  11244445588998865321111 2367899998754  566 23679999999998777777


Q ss_pred             EEecCCCCeEEEEEeeccCCC
Q 020448          265 AWNRSSKQLRFVLIAGQPLNE  285 (326)
Q Consensus       265 i~a~~~~~a~~LL~~G~pl~e  285 (326)
                      +.+.  +++.++.++-.|+.+
T Consensus       326 ~~n~--e~~~l~~~~d~p~~~  344 (354)
T 2d40_A          326 FQTT--QDSVLFSFSDRPVQE  344 (354)
T ss_dssp             EEEE--EEEEEEEEESHHHHH
T ss_pred             EEeC--CCEEEEEEcCHHHHH
Confidence            7763  578888887666543

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=97.01  E-value=0.0035  Score=56.83  Aligned_cols=88  Identities=19%  Similarity=0.166  Sum_probs=65.2

Q ss_pred             CCCceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCC
Q 020448           57 DGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRG  136 (326)
Q Consensus        57 ~G~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsG  136 (326)
                      .+.|+..+.+++.. .   +.-..+..+++.|++..+.|.|.+.|=.-|||+|+++..+. |..-.|++||+-||.++  
T Consensus       147 ~~~g~~~r~l~p~~-~---~~~~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~-~~~~~l~~GD~~~~~~~--  219 (246)
T 1sfn_A          147 GDDHLIARKLLPDE-P---AFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLE-ENYYPVTAGDIIWMGAH--  219 (246)
T ss_dssp             SCTTEEEEECSCCC-T---TCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEET-TEEEEEETTCEEEECTT--
T ss_pred             CCCCeEEEEeCCCc-c---CCCeEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEEC-CEEEEcCCCCEEEECCC--
Confidence            45677777777733 2   44455666778888778876555677788999999999886 66779999999999887  


Q ss_pred             eEEEeeeCCCCceeE
Q 020448          137 IVHSEMPAGEGVQNG  151 (326)
Q Consensus       137 I~HsE~~~~~~~~~~  151 (326)
                      .-|.=.|..++++++
T Consensus       220 ~pH~~~n~g~~~~~y  234 (246)
T 1sfn_A          220 CPQWYGALGRNWSKY  234 (246)
T ss_dssp             CCEEEEEESSSCEEE
T ss_pred             CCEEEEcCCCCCEEE
Confidence            557777766666654

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=96.94  E-value=0.028  Score=54.81  Aligned_cols=185  Identities=14%  Similarity=0.067  Sum_probs=110.2

Q ss_pred             cccCCCCCCCCCCCCCCceEEEEEeeceEE--EecCCCC-eeeeeCCcE------EEEecCCCeEEEeeeCC-CCceeEE
Q 020448           83 EFSVSPPAGFPDHPHRGFETVTYMLQGGIT--HQDFSGH-KGTIHTGDV------QWMTAGRGIVHSEMPAG-EGVQNGL  152 (326)
Q Consensus        83 ~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~--H~DS~Gn-~~~i~~Gdv------QwMtAGsGI~HsE~~~~-~~~~~~l  152 (326)
                      .+.+.|+.-.++|.| +-+-+.||++|+..  --|+-+. ...+++||+      ...-+|  +.|.-.|.. ++++..+
T Consensus        56 ~~~l~pgg~~~ph~~-~a~ei~yVl~G~~~v~~v~~~~~~~~~l~~GDv~~~~~~~~iP~G--~~h~~~N~g~~~~l~~i  132 (397)
T 2phl_A           56 EFRSKPETLLLPQQA-DAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAG--TIFYLVNPDPKEDLRII  132 (397)
T ss_dssp             EEEECSSEEEEEEEE-SEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTTSCSEEEECTT--CEEEEEECCSSCCEEEE
T ss_pred             EEEECCCcCccCEec-CCCeEEEEEeeeEEEEEEeCCCcEEEEECCCCcccccceEEECCC--CcEEEEeCCCCCCeEEE
Confidence            344566544577877 56678899998744  3344333 357999999      888776  789888876 6788888


Q ss_pred             EEEe--ccCCCC----CCCCC--Cc-cc-----------cCC--------------------------------------
Q 020448          153 QLWI--NLSSSD----KMIEP--RY-QE-----------IPS--------------------------------------  174 (326)
Q Consensus       153 QLWi--nLP~~~----k~~~P--~Y-~~-----------~~~--------------------------------------  174 (326)
                      ++--  |.|.-.    -...+  ++ ..           ++.                                      
T Consensus       133 ~~~~~~~~~~~~~f~L~G~~~~~s~~~~~~~~vLa~af~v~~~~v~~l~~~~~~q~~~~Iv~~~~~~~~~~~~~~~~~~~  212 (397)
T 2phl_A          133 QLAMPVNNPQIHEFFLSSTEAQQSYLQEFSKHILEASFNSKFEEINRVLFEEEGQQEGVIVNIDSEQIKELSKHAKSSSR  212 (397)
T ss_dssp             EEEEESSSSSCCEEECCCBTTBCCGGGGSCHHHHHHHHTSCHHHHHHHHTCSTTCBSSSEEECCTTTHHHHHHHHHTC--
T ss_pred             EeecCCCCccceeeeccCCCchhHHhhcCCHHHHHHHhCCCHHHHHhhhhcccccccCceEEcCcccchhhhccCCCccc
Confidence            8864  111000    00000  00 00           000                                      


Q ss_pred             ----CccceecCCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc--Cc----
Q 020448          175 ----EEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TV----  244 (326)
Q Consensus       175 ----~~iP~~~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g~----  244 (326)
                          ++.|....++++++.+...          ...+.+..+.|++|+-...-..+.-.-++||++|++.+.  +.    
T Consensus       213 ~~l~~~~p~~~n~~G~~~~v~~~----------~l~is~a~v~l~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~  282 (397)
T 2phl_A          213 KSLSKQDNTIGNEFGNLTERTDN----------SLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNK  282 (397)
T ss_dssp             -------CEEEETTEEEEEEEET----------TTTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--
T ss_pred             ccccccCCcccCCCCeEEEEeec----------cCCeeEEEEEEcCCcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccc
Confidence                0111111122222222211          045677788999998665444344568999999998773  21    


Q ss_pred             --C-----ceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448          245 --N-----SSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       245 --~-----~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                        +     ...|.+||+.++..|-...+.+.  .++++|.|.-..
T Consensus       283 ~~~g~~~~~~~l~~GDV~vvP~G~~h~~~n~--~~l~~l~f~~~s  325 (397)
T 2phl_A          283 ETLEYESYRAELSKDDVFVIPAAYPVAIKAT--SNVNFTGFGINA  325 (397)
T ss_dssp             CCSCEEEEEEEEETTCEEEECTTCCEEEEES--SSEEEEEEEESC
T ss_pred             cCCCceEEEEEecCCCEEEECCCCeEEEEeC--CCeEEEEEECCC
Confidence              1     14589999999998877777775  378888875443

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=96.93  E-value=0.059  Score=53.45  Aligned_cols=83  Identities=8%  Similarity=0.028  Sum_probs=58.5

Q ss_pred             ccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc-----CcCc--eeecCccEEEEcCCCeEEEEecCCCCeEEEEE
Q 020448          206 PTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG-----TVNS--SAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLI  278 (326)
Q Consensus       206 ~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~-----g~~~--~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~  278 (326)
                      .+.+..+.|++|+-...-..+.-.-++||++|++.+.     |+.-  ..|.+||+.++..|-...+.+. ++++++|.+
T Consensus       321 ~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~v~P~G~~H~~~ng-~~~~~~l~~  399 (459)
T 2e9q_A          321 RLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLMIPQNFVVIKRAS-DRGFEWIAF  399 (459)
T ss_dssp             TCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEE-EEEEEEEEE
T ss_pred             ccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEEEECCCCEEEEEeC-CCCeEEEEE
Confidence            6778888999998766444444468999999998874     2111  2489999999998877777774 467888888


Q ss_pred             eeccCCCceee
Q 020448          279 AGQPLNEPVVQ  289 (326)
Q Consensus       279 ~G~pl~epi~~  289 (326)
                      .-.+-.+.+..
T Consensus       400 ~~s~~~~~~~l  410 (459)
T 2e9q_A          400 KTNDNAITNLL  410 (459)
T ss_dssp             ESSSSCCEEES
T ss_pred             ecCCCCcceee
Confidence            54443344433

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=96.90  E-value=0.0092  Score=46.94  Aligned_cols=68  Identities=7%  Similarity=0.109  Sum_probs=50.8

Q ss_pred             cCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCee-eeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEe
Q 020448           85 SVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKG-TIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWI  156 (326)
Q Consensus        85 ~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~-~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWi  156 (326)
                      .+.++..+++|.|...| +.||++|++...-. |... .+++||+-|+.+|  ..|+-.+..+.+++.+-+.+
T Consensus        33 ~~~pg~~~~~H~H~~~e-~~~Vl~G~~~~~i~-~~~~~~l~~Gd~i~ip~~--~~H~~~~~~~~~~~~l~i~~  101 (117)
T 2b8m_A           33 VLPRGEQMPKHYSNSYV-HLIIIKGEMTLTLE-DQEPHNYKEGNIVYVPFN--VKMLIQNINSDILEFFVVKA  101 (117)
T ss_dssp             EEETTCBCCCEECSSCE-EEEEEESEEEEEET-TSCCEEEETTCEEEECTT--CEEEEECCSSSEEEEEEEEC
T ss_pred             EECCCCcCCCEeCCCcE-EEEEEeCEEEEEEC-CEEEEEeCCCCEEEECCC--CcEEeEcCCCCCEEEEEEEC
Confidence            34556667899997665 56899999987643 3456 8999999999986  78998887666666655544

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=96.83  E-value=0.0024  Score=55.38  Aligned_cols=71  Identities=18%  Similarity=0.205  Sum_probs=54.8

Q ss_pred             cCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCCC
Q 020448           85 SVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSS  161 (326)
Q Consensus        85 ~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~~  161 (326)
                      .+.|++..++|.|.+.|.+ |||+|+++-.-.-|..-.|++||+- +.+  |..|.=.|.++.++++  |||-.|..
T Consensus        85 ~l~PG~~~~~H~H~~eE~~-~VLeGel~l~ld~ge~~~L~~GDsi-~~~--g~~H~~~N~g~~~ar~--l~V~~P~~  155 (172)
T 3es1_A           85 DMLPGKESPMHRTNSIDYG-IVLEGEIELELDDGAKRTVRQGGII-VQR--GTNHLWRNTTDKPCRI--AFILIEAP  155 (172)
T ss_dssp             EECTTCBCCCBCCSEEEEE-EEEESCEEEECGGGCEEEECTTCEE-EEC--SCCBEEECCSSSCEEE--EEEEEECC
T ss_pred             EECCCCCCCCeecCceEEE-EEEeCEEEEEECCCeEEEECCCCEE-EeC--CCcEEEEeCCCCCEEE--EEEEcCCC
Confidence            3566777889999998877 9999999876333567889999997 665  5889999987777776  56655653

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=96.82  E-value=0.0086  Score=48.34  Aligned_cols=77  Identities=6%  Similarity=0.117  Sum_probs=57.7

Q ss_pred             CccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc--CcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448          205 TPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       205 ~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      .++....+.+++|+.+....  ...-++||++|++++.  | +...+++||.+.+..+..-.+++. ++.+++|++...+
T Consensus        38 ~~~~~~~~~~~pG~~~~~H~--~~~E~~~Vl~G~~~~~~~g-~~~~l~~GD~v~ip~g~~H~~~~~-~~~~~~l~v~~P~  113 (119)
T 3lwc_A           38 GPITIGYGRYAPGQSLTETM--AVDDVMIVLEGRLSVSTDG-ETVTAGPGEIVYMPKGETVTIRSH-EEGALTAYVTYPH  113 (119)
T ss_dssp             CCCEEEEEEECTTCEEEEEC--SSEEEEEEEEEEEEEEETT-EEEEECTTCEEEECTTCEEEEEEE-EEEEEEEEEEECC
T ss_pred             CCEEEEEEEECCCCCcCccC--CCCEEEEEEeCEEEEEECC-EEEEECCCCEEEECCCCEEEEEcC-CCCeEEEEEECCC
Confidence            45666677899999877653  6679999999998774  4 236899999999998887777764 2578888887766


Q ss_pred             CCC
Q 020448          283 LNE  285 (326)
Q Consensus       283 l~e  285 (326)
                      ..|
T Consensus       114 w~~  116 (119)
T 3lwc_A          114 WRP  116 (119)
T ss_dssp             ---
T ss_pred             Ccc
Confidence            544

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=96.81  E-value=0.0049  Score=52.24  Aligned_cols=87  Identities=9%  Similarity=-0.041  Sum_probs=62.1

Q ss_pred             ceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEE
Q 020448           60 GAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVH  139 (326)
Q Consensus        60 g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~H  139 (326)
                      |+..+.+++...    .+|.+. .+.+.|+...++|.|...|+ .||++|+++..- -|..-.+++||+-|+.+|  +.|
T Consensus        30 g~~~~~L~~~~~----~~~~~~-~~~l~pG~~~~~H~H~~~E~-~~Vl~G~~~v~v-~g~~~~l~~Gd~i~ip~~--~~H  100 (156)
T 3kgz_A           30 DVSRQLLFADPN----LACEWR-YFEVDEGGYSTLERHAHVHA-VMIHRGHGQCLV-GETISDVAQGDLVFIPPM--TWH  100 (156)
T ss_dssp             EEEEEEEECCTT----CSEEEE-EEEEEEEEECCCBBCSSCEE-EEEEEEEEEEEE-TTEEEEEETTCEEEECTT--CCE
T ss_pred             CeEEEEEEcCCC----CcEEEE-EEEECCCCccCceeCCCcEE-EEEEeCEEEEEE-CCEEEEeCCCCEEEECCC--CcE
Confidence            566666777652    344332 23455666678999998875 699999998872 345678999999999886  789


Q ss_pred             EeeeCCCCceeEEEEE
Q 020448          140 SEMPAGEGVQNGLQLW  155 (326)
Q Consensus       140 sE~~~~~~~~~~lQLW  155 (326)
                      +=.|.++.++.++=+.
T Consensus       101 ~~~n~g~~~~~~l~i~  116 (156)
T 3kgz_A          101 QFRANRGDCLGFLCVV  116 (156)
T ss_dssp             EEECCSSSCEEEEEEE
T ss_pred             EeEeCCCCCEEEEEEE
Confidence            9888777777665333

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=96.74  E-value=0.0029  Score=49.40  Aligned_cols=67  Identities=21%  Similarity=0.196  Sum_probs=55.2

Q ss_pred             CCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCe--eeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEE
Q 020448           86 VSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHK--GTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQL  154 (326)
Q Consensus        86 ~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~--~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQL  154 (326)
                      +.|++..++|-|..-+.+.||++|.+.-.+.-|+.  ..+.+|++-|..+|  ..|.=.|..+.+++++-+
T Consensus        24 i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~~~~l~~G~~~~ip~G--~~H~~~N~g~~pl~~IeV   92 (98)
T 3lag_A           24 LPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRSLAQLKTGRSYARKAG--VQHDVRNESTAEIVFLEI   92 (98)
T ss_dssp             ECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEECCCBCTTCCEEECTT--CEEEEBCCSSSCEEEEEE
T ss_pred             ECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceEEEEecCCcEEEEcCC--CcEECEECCCCeEEEEEE
Confidence            56777889999999899999999998887766654  35899999999887  689999998888988754

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=96.72  E-value=0.032  Score=47.50  Aligned_cols=109  Identities=10%  Similarity=0.163  Sum_probs=74.8

Q ss_pred             CCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCC
Q 020448          183 DGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLG  260 (326)
Q Consensus       183 ~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g  260 (326)
                      .|...+++.+...|..     ...+.+..+.+.+|.....-.. ...-++||++|++.+  ++ +...+.+||.+.+..+
T Consensus        37 ~g~~~~~L~~~~~g~~-----~~~~~~~~~~l~pG~~~~~H~H-~~~E~~~Vl~G~~~~~i~~-~~~~l~~Gd~i~ip~~  109 (167)
T 3ibm_A           37 SGARRQTLVGRPAGQE-----APAFETRYFEVEPGGYTTLERH-EHTHVVMVVRGHAEVVLDD-RVEPLTPLDCVYIAPH  109 (167)
T ss_dssp             CCEEEEEEECTTTTCC-----SSSEEEEEEEECTTCBCCCBBC-SSCEEEEEEESEEEEEETT-EEEEECTTCEEEECTT
T ss_pred             CCcEEEEEECCCCCCC-----CCcEEEEEEEECCCCCCCCccC-CCcEEEEEEeCEEEEEECC-EEEEECCCCEEEECCC
Confidence            4678888887643211     2245566778899986532222 346899999998876  44 2367999999999987


Q ss_pred             CeEEEEecC-CCCeEEEEEeeccCCCceeeeCCcccCcHHHHHHHH
Q 020448          261 DGLSAWNRS-SKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQTI  305 (326)
Q Consensus       261 ~~l~i~a~~-~~~a~~LL~~G~pl~epi~~~GpFVmnt~~ei~~A~  305 (326)
                      ..=.+.+.+ ++++++|++...+-+.|       ..-+.+++.+..
T Consensus       110 ~~H~~~n~~~~~~~~~l~i~~~~~d~p-------~~p~~~~~~~l~  148 (167)
T 3ibm_A          110 AWHQIHATGANEPLGFLCIVDSDRDRP-------QRPDADDLARMC  148 (167)
T ss_dssp             CCEEEEEESSSCCEEEEEEEESSCCCC-------BCCCHHHHHHHT
T ss_pred             CcEEEEeCCCCCCEEEEEEEeCCcCcc-------cCCCHHHHHHHH
Confidence            776676655 56888888876654333       456888887644

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=96.70  E-value=0.059  Score=41.20  Aligned_cols=75  Identities=16%  Similarity=0.205  Sum_probs=52.1

Q ss_pred             ccEEEEEEECCCCeEEEecCCC-CeEEEEEeecceEEcC--cCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448          206 PTMFLDFTLKPRAQIHQSIPET-WNAFVYTIEGEGVFGT--VNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       206 ~~~~~di~L~~g~~~~~~~p~~-~~~~lyVl~G~~~i~g--~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      .+.+..+.+.+|.....-.... ...++||++|++++.-  .+...+.+||.+.+..+..=.+.+.  .++++|++-..|
T Consensus        32 ~~~~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~--~~~~~l~~~~p~  109 (110)
T 2q30_A           32 NFKIVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGDAVIPAPRGAVLVAPISTPHGVRAV--TDMKVLVTIAPP  109 (110)
T ss_dssp             SCEEEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGGGCEEEECTTEEEEEETTSCEEEEES--SSEEEEEEEESC
T ss_pred             CEEEEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCCEEEEECCCCEEEeCCCCcEEEEEc--CCcEEEEEECCC
Confidence            4566777889998765433332 3456899999987732  1337899999999998776667764  357777765443

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=96.68  E-value=0.0091  Score=45.98  Aligned_cols=67  Identities=16%  Similarity=0.293  Sum_probs=51.6

Q ss_pred             CCCCCCCCCC--CCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEE
Q 020448           86 VSPPAGFPDH--PHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLW  155 (326)
Q Consensus        86 ~~~~~GF~~H--PHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLW  155 (326)
                      +.|+..++.|  .|.+.+-+.||++|+++..-. |..-.+++||+-|+.+|  ..|+-.+..+.++..+-+.
T Consensus        28 ~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~-~~~~~l~~Gd~~~i~~~--~~H~~~~~~~~~~~~~~v~   96 (113)
T 2gu9_A           28 IAPGDREGGPDNRHRGADQWLFVVDGAGEAIVD-GHTQALQAGSLIAIERG--QAHEIRNTGDTPLKTVNFY   96 (113)
T ss_dssp             ECTTCEEECCCSSSCCCEEEEEEEECCEEEEET-TEEEEECTTEEEEECTT--CCEEEECCSSSCEEEEEEE
T ss_pred             ECCCCccCCcccccCCCcEEEEEEeCEEEEEEC-CEEEEeCCCCEEEECCC--CcEEeEcCCCCCEEEEEEE
Confidence            4555556777  787678888999999987653 55678999999999986  7899888766667665554

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=96.66  E-value=0.0041  Score=49.72  Aligned_cols=69  Identities=20%  Similarity=0.163  Sum_probs=55.4

Q ss_pred             cCCCCCCCC-CCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEe
Q 020448           85 SVSPPAGFP-DHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWI  156 (326)
Q Consensus        85 ~~~~~~GF~-~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWi  156 (326)
                      .+.|+..++ +|.|.+.|.+-||++|++...-. |..-.+++||+-|+.+|  ..|+-.+.++.++..+-+++
T Consensus        32 ~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~-~~~~~l~~Gd~i~i~~~--~~H~~~~~~~~~~~~~~i~~  101 (125)
T 3cew_A           32 HLPAGAGVPFVHSHKQNEEIYGILSGKGFITID-GEKIELQAGDWLRIAPD--GKRQISAASDSPIGFLCIQV  101 (125)
T ss_dssp             EECTTCBCSSEEEESSEEEEEEEEEEEEEEEET-TEEEEEETTEEEEECTT--CCEEEEEBTTBCEEEEEEEE
T ss_pred             EECCCCCCCCCccCCCceEEEEEEeCEEEEEEC-CEEEEeCCCCEEEECCC--CcEEEEcCCCCCEEEEEEEc
Confidence            455666677 79999999999999999987643 55678999999999876  68998887666777776665

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=96.61  E-value=0.02  Score=48.43  Aligned_cols=102  Identities=11%  Similarity=0.148  Sum_probs=69.4

Q ss_pred             CeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCC
Q 020448          184 GVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGD  261 (326)
Q Consensus       184 g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~  261 (326)
                      |...|++.+..    .     ..+.+..+.+++|.....-.. ...-++||++|++++  ++ +...+.+||.+.+..+.
T Consensus        30 g~~~~~L~~~~----~-----~~~~~~~~~l~pG~~~~~H~H-~~~E~~~Vl~G~~~v~v~g-~~~~l~~Gd~i~ip~~~   98 (156)
T 3kgz_A           30 DVSRQLLFADP----N-----LACEWRYFEVDEGGYSTLERH-AHVHAVMIHRGHGQCLVGE-TISDVAQGDLVFIPPMT   98 (156)
T ss_dssp             EEEEEEEECCT----T-----CSEEEEEEEEEEEEECCCBBC-SSCEEEEEEEEEEEEEETT-EEEEEETTCEEEECTTC
T ss_pred             CeEEEEEEcCC----C-----CcEEEEEEEECCCCccCceeC-CCcEEEEEEeCEEEEEECC-EEEEeCCCCEEEECCCC
Confidence            46788888753    1     345556667788775432221 234689999998876  44 23679999999999877


Q ss_pred             eEEEEecCCCCeEEEEEeeccCCCceeeeCCcccCcHHHHHH
Q 020448          262 GLSAWNRSSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQ  303 (326)
Q Consensus       262 ~l~i~a~~~~~a~~LL~~G~pl~epi~~~GpFVmnt~~ei~~  303 (326)
                      .=.+.+.+++++++|++-..+-+.|       ..-+.++|.+
T Consensus        99 ~H~~~n~g~~~~~~l~i~~~~~d~p-------~~~~~~~l~~  133 (156)
T 3kgz_A           99 WHQFRANRGDCLGFLCVVNAARDRP-------QLPTADDLAE  133 (156)
T ss_dssp             CEEEECCSSSCEEEEEEEESSCCCC-------BCCCHHHHHH
T ss_pred             cEEeEeCCCCCEEEEEEEeCCCCcc-------cCCCHHHHHH
Confidence            7677776567788888877664443       4467777753

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=96.59  E-value=0.0075  Score=55.35  Aligned_cols=74  Identities=14%  Similarity=0.112  Sum_probs=55.4

Q ss_pred             CccEEEEEEECCCCeEEEecC-CCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          205 TPTMFLDFTLKPRAQIHQSIP-ETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       205 ~~~~~~di~L~~g~~~~~~~p-~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      ..+.++.+.|++|+...-... .+..-++||++|++++  ++ +...|++||.+.+..+..-.+.+.+++.+++|++.
T Consensus        60 ~~~~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~-~~~~L~~GD~~~~~~~~~H~~~N~~~~~~~~l~v~  136 (274)
T 1sef_A           60 ATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQ-ETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYK  136 (274)
T ss_dssp             CSSEEEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEECSS-CEEEEETTEEEEECTTSCCEEEESSSSCEEEEEEE
T ss_pred             CcEEEEEEEECCCCcCCCCCCCCCceEEEEEEEeEEEEEECC-EEEEECCCCEEEECCCCCEEEEeCCCCCEEEEEEE
Confidence            456677889999886543222 2346799999999887  34 33789999999999777667777666789988876

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=96.54  E-value=0.012  Score=50.60  Aligned_cols=75  Identities=11%  Similarity=-0.053  Sum_probs=56.9

Q ss_pred             cEEEEEEECC-CCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448          207 TMFLDFTLKP-RAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       207 ~~~~di~L~~-g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      +....+.|.+ |+...-.......-++||++|++++  ++ +...|.+||.+.+..+..-.+.+.+++.|+++++.+++
T Consensus        88 ~~~~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl~g-~~~~L~~Gds~~iP~g~~H~~~N~~d~~Arll~Vq~~~  165 (166)
T 2vpv_A           88 FASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVCK-NKFLSVKGSTFQIPAFNEYAIANRGNDEAKMFFVQVTV  165 (166)
T ss_dssp             CEEEEEEECSSGGGCEEEECCSEEEEEEEEESEEEEEETT-EEEEEETTCEEEECTTCEEEEEECSSSCEEEEEEEEEC
T ss_pred             ceeEEEEECCCCCCCCCccCCCceEEEEEEEeEEEEEECC-EEEEEcCCCEEEECCCCCEEEEECCCCCEEEEEEEEEC
Confidence            4555678999 7644433444556899999998776  55 23789999999999888888888777789999987653

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=96.51  E-value=0.016  Score=47.92  Aligned_cols=69  Identities=12%  Similarity=0.043  Sum_probs=53.6

Q ss_pred             cCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCe------eeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEe
Q 020448           85 SVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHK------GTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWI  156 (326)
Q Consensus        85 ~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~------~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWi  156 (326)
                      .+.|+..+++|.|.+.+-+.||++|+++..-. |..      -.+.+||+-|+.+|  +.|.-.|..+.++..+=++.
T Consensus        49 ~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~-~~~~~~~~~~~l~~Gd~i~ip~g--~~H~~~n~~~~~~~~l~i~~  123 (148)
T 2oa2_A           49 SIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMG-HRQDNLHFQEEVFDDYAILIPAG--TWHNVRNTGNRPLKLYSIYA  123 (148)
T ss_dssp             EECTTCBCCCBCCTTCEEEEEEEESEEEEEEE-SBTTBCCEEEEEETTCEEEECTT--CEEEEEECSSSCEEEEEEEE
T ss_pred             EECCCCccCceECCCCcEEEEEEeCEEEEEEC-CccccceeeEEECCCCEEEECCC--CcEEEEECCCCCEEEEEEEC
Confidence            35566678899999998999999999877532 222      78999999999875  79999987777777765543

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=96.50  E-value=0.0066  Score=55.21  Aligned_cols=86  Identities=14%  Similarity=0.078  Sum_probs=61.7

Q ss_pred             ceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEE
Q 020448           60 GAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVH  139 (326)
Q Consensus        60 g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~H  139 (326)
                      ++..+.+++......+.    +-...+.|+...+.|.|.+.|=+-||++|+++..-. |..-.|++||+-|+.+|  +.|
T Consensus       164 ~~~~~~l~~~~~~~~~~----~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~-~~~~~l~~GD~i~~~~~--~~H  236 (261)
T 1rc6_A          164 DVILLDFLPKELGFDMN----MHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLD-NNWIPVKKGDYIFMGAY--SLQ  236 (261)
T ss_dssp             -CEEEECSCCSTTCSEE----EEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESS-SCEEEEETTCEEEECSS--EEE
T ss_pred             ceEEEEecCcccCCceE----EEEEEECCCCccCcccCCCceEEEEEEEeEEEEEEC-CEEEEeCCCCEEEECCC--CcE
Confidence            56677677654311222    233456777778899998888899999999998764 67789999999999986  799


Q ss_pred             EeeeCCC-CceeEE
Q 020448          140 SEMPAGE-GVQNGL  152 (326)
Q Consensus       140 sE~~~~~-~~~~~l  152 (326)
                      .-.|.++ ++++++
T Consensus       237 ~~~n~g~~~~~~~l  250 (261)
T 1rc6_A          237 AGYGVGRGEAFSYI  250 (261)
T ss_dssp             EEEEC----CEEEE
T ss_pred             EeEeCCCCcCEEEE
Confidence            9888876 777664

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=96.48  E-value=0.006  Score=47.72  Aligned_cols=69  Identities=16%  Similarity=0.110  Sum_probs=50.6

Q ss_pred             ccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCC
Q 020448           84 FSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSS  160 (326)
Q Consensus        84 ~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~  160 (326)
                      ..+.++..+++|-|.+. -+.||++|.++..- -|..-.+.+||+-|+.+|  +.|+-.+..  ++..  +|+..|.
T Consensus        39 ~~~~pg~~~~~H~H~~~-e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~ip~~--~~H~~~~~~--~~~~--l~v~~p~  107 (116)
T 2pfw_A           39 IWFDKGAEGYVHAHRHS-QVSYVVEGEFHVNV-DGVIKVLTAGDSFFVPPH--VDHGAVCPT--GGIL--IDTFSPA  107 (116)
T ss_dssp             EEECTTEEEEEECCSSE-EEEEEEEECEEEEE-TTEEEEECTTCEEEECTT--CCEEEEESS--CEEE--EEEEESC
T ss_pred             EEECCCCcCCcEECCcc-eEEEEEeeEEEEEE-CCEEEEeCCCCEEEECcC--CceeeEeCC--CcEE--EEEECCc
Confidence            34556656789999855 46799999998775 345678999999999885  689988764  4444  5664454

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=96.46  E-value=0.038  Score=42.37  Aligned_cols=77  Identities=13%  Similarity=0.245  Sum_probs=55.9

Q ss_pred             CccEEEEEEECCCCeEEEe--cCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEee
Q 020448          205 TPTMFLDFTLKPRAQIHQS--IPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAG  280 (326)
Q Consensus       205 ~~~~~~di~L~~g~~~~~~--~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G  280 (326)
                      ..+.++.+.+.+|......  ...+..-++||++|++++  ++ +...+.+||.+.+..+..=.+.+.++++++++.+..
T Consensus        19 ~~~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~-~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v~~   97 (113)
T 2gu9_A           19 RQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDG-HTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYH   97 (113)
T ss_dssp             TTEEEEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEETT-EEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEE
T ss_pred             CcEEEEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEECC-EEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEEC
Confidence            3456778899999876533  223356899999999876  44 236899999999998777677765556788887765


Q ss_pred             cc
Q 020448          281 QP  282 (326)
Q Consensus       281 ~p  282 (326)
                      .|
T Consensus        98 ~~   99 (113)
T 2gu9_A           98 PP   99 (113)
T ss_dssp             SC
T ss_pred             CC
Confidence            44

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=96.46  E-value=0.012  Score=50.95  Aligned_cols=83  Identities=13%  Similarity=0.125  Sum_probs=55.8

Q ss_pred             CccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448          205 TPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       205 ~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      ....+..+.|.+|+....-.. ...-|+||++|++++  ++.+...|++||.+ +..+..=.+.+.+++.+++|++...+
T Consensus        77 ~G~~~~~v~l~PG~~~~~H~H-~~eE~~~VLeGel~l~ld~ge~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V~~P~  154 (172)
T 3es1_A           77 GGSVIRVVDMLPGKESPMHRT-NSIDYGIVLEGEIELELDDGAKRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFILIEA  154 (172)
T ss_dssp             CSEEEEEEEECTTCBCCCBCC-SEEEEEEEEESCEEEECGGGCEEEECTTCEE-EECSCCBEEECCSSSCEEEEEEEEEC
T ss_pred             CCeEEEEEEECCCCCCCCeec-CceEEEEEEeCEEEEEECCCeEEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEEEcCC
Confidence            445666778899885422111 223588999999987  31233679999999 88776666676666789988876654


Q ss_pred             CCCceeeeC
Q 020448          283 LNEPVVQYG  291 (326)
Q Consensus       283 l~epi~~~G  291 (326)
                        +|+...|
T Consensus       155 --~p~~v~g  161 (172)
T 3es1_A          155 --PAYLHNG  161 (172)
T ss_dssp             --CCCEETT
T ss_pred             --CceeECC
Confidence              5555554

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=96.43  E-value=0.022  Score=45.72  Aligned_cols=90  Identities=14%  Similarity=0.269  Sum_probs=61.5

Q ss_pred             CCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCC
Q 020448          183 DGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLG  260 (326)
Q Consensus       183 ~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g  260 (326)
                      +|...++++....        ...+.++.+.+.+|.....-.. ...-++||++|++++  ++ +...+.+||.+.+..+
T Consensus        32 ~g~~~~~l~~~~~--------~~~~~~~~~~~~pg~~~~~H~H-~~~e~~~Vl~G~~~~~i~~-~~~~l~~Gd~i~ip~g  101 (126)
T 1vj2_A           32 RGVRKRVLIGLKD--------APNFVMRLFTVEPGGLIDRHSH-PWEHEIFVLKGKLTVLKEQ-GEETVEEGFYIFVEPN  101 (126)
T ss_dssp             EEEEEEEEECTTT--------CSSEEEEEEEEEEEEEEEEECC-SSCEEEEEEESEEEEECSS-CEEEEETTEEEEECTT
T ss_pred             CCeEEEEEeCCCC--------CCCEEEEEEEECCCCcCCceeC-CCcEEEEEEEeEEEEEECC-EEEEECCCCEEEECCC
Confidence            3456777765421        2345677788888877653333 245789999999877  34 2378999999999988


Q ss_pred             CeEEEEecCCCCeEEEEEeecc
Q 020448          261 DGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       261 ~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      ..=.+.+.++++++++.+...+
T Consensus       102 ~~H~~~~~~~~~~~~l~v~~~~  123 (126)
T 1vj2_A          102 EIHGFRNDTDSEVEFLCLIPKE  123 (126)
T ss_dssp             CCEEEECCSSSCEEEEEEEEGG
T ss_pred             CcEEeEeCCCCCEEEEEEEccC
Confidence            7767776545578888776544

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=96.37  E-value=0.029  Score=44.46  Aligned_cols=77  Identities=14%  Similarity=0.189  Sum_probs=53.9

Q ss_pred             ccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc--CcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448          206 PTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       206 ~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      .+.+..+.+.+|.....-...+..-++||++|++++.  +.+...+++||.+.+..+..=.+.+.++++++++.+...+
T Consensus        38 ~~~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v~~p~  116 (125)
T 3h8u_A           38 DSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIVTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVVAPG  116 (125)
T ss_dssp             SCEEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTTCEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEEST
T ss_pred             CEEEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCCeEEEeCCCCEEEECCCCEEEeEeCCCCCEEEEEEECCC
Confidence            3567778999999765333333457889999998863  3234689999999998776555666555678887776543

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=96.29  E-value=0.016  Score=49.51  Aligned_cols=87  Identities=10%  Similarity=-0.032  Sum_probs=61.0

Q ss_pred             ceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEE
Q 020448           60 GAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVH  139 (326)
Q Consensus        60 g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~H  139 (326)
                      |+..+-+++...    ..|.+ -.+.+.|+...++|-|...| +.||++|+++..- -|..-.+++||+-|+.+|  +.|
T Consensus        39 gv~~r~L~~~~~----~~~~~-~~~~l~pG~~~~~H~H~~~E-~~~Vl~G~~~~~v-~g~~~~l~~GD~i~ip~g--~~H  109 (166)
T 3jzv_A           39 SVTRQVLFSGNG----LTGEL-RYFEVGPGGHSTLERHQHAH-GVMILKGRGHAMV-GRAVSAVAPYDLVTIPGW--SWH  109 (166)
T ss_dssp             EEEEEEEECCTT----CSEEE-EEEEEEEEEECCCBBCSSCE-EEEEEEECEEEEE-TTEEEEECTTCEEEECTT--CCE
T ss_pred             CeEEEEEECCCC----CeEEE-EEEEECCCCccCceeCCCcE-EEEEEeCEEEEEE-CCEEEEeCCCCEEEECCC--CcE
Confidence            566555666542    33332 23345566668899999877 5699999998753 245678999999999886  789


Q ss_pred             EeeeCCCCceeEEEEE
Q 020448          140 SEMPAGEGVQNGLQLW  155 (326)
Q Consensus       140 sE~~~~~~~~~~lQLW  155 (326)
                      +=.|..+.++.++=+.
T Consensus       110 ~~~n~~~~~~~~l~i~  125 (166)
T 3jzv_A          110 QFRAPADEALGFLCMV  125 (166)
T ss_dssp             EEECCTTSCEEEEEEE
T ss_pred             EeEeCCCCCEEEEEEE
Confidence            8888777777665443

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=96.29  E-value=0.015  Score=44.40  Aligned_cols=76  Identities=13%  Similarity=0.041  Sum_probs=53.4

Q ss_pred             ccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc--Cc-CceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeec
Q 020448          206 PTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TV-NSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQ  281 (326)
Q Consensus       206 ~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g~-~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~  281 (326)
                      .+.++.+.+++|+....-...+..-++||++|++++.  +. +...+.+||.+.+..+..=.+.+.+++++++|.+.-+
T Consensus        17 ~~~~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~~~~l~~Gd~~~~p~~~~H~~~N~g~~~~~~l~v~~~   95 (97)
T 2fqp_A           17 RVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEIEIK   95 (97)
T ss_dssp             SEEEEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEEEEEECTTCCEEECTTCEEEEECCSSSCEEEEEEEEC
T ss_pred             eEEEEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCEEEEEcCCCEEEeCCCCcccCEeCCCCcEEEEEEEEc
Confidence            5677788999998754222223235999999998873  31 2368999999999877666666665567888776543

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=96.27  E-value=0.027  Score=48.14  Aligned_cols=102  Identities=14%  Similarity=0.169  Sum_probs=68.3

Q ss_pred             CeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCC
Q 020448          184 GVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGD  261 (326)
Q Consensus       184 g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~  261 (326)
                      |...|++.+...         ..+.+..+.+++|.....-.. ...-++||++|++++  +| +...+.+||.+.+..+.
T Consensus        39 gv~~r~L~~~~~---------~~~~~~~~~l~pG~~~~~H~H-~~~E~~~Vl~G~~~~~v~g-~~~~l~~GD~i~ip~g~  107 (166)
T 3jzv_A           39 SVTRQVLFSGNG---------LTGELRYFEVGPGGHSTLERH-QHAHGVMILKGRGHAMVGR-AVSAVAPYDLVTIPGWS  107 (166)
T ss_dssp             EEEEEEEECCTT---------CSEEEEEEEEEEEEECCCBBC-SSCEEEEEEEECEEEEETT-EEEEECTTCEEEECTTC
T ss_pred             CeEEEEEECCCC---------CeEEEEEEEECCCCccCceeC-CCcEEEEEEeCEEEEEECC-EEEEeCCCCEEEECCCC
Confidence            467888887631         345556667788875432222 234789999998876  44 23689999999999887


Q ss_pred             eEEEEecCCCCeEEEEEeeccCCCceeeeCCcccCcHHHHHH
Q 020448          262 GLSAWNRSSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQ  303 (326)
Q Consensus       262 ~l~i~a~~~~~a~~LL~~G~pl~epi~~~GpFVmnt~~ei~~  303 (326)
                      .=.+.+.++++++++++.-.+-+.|       ..-+.++|.+
T Consensus       108 ~H~~~n~~~~~~~~l~i~~~~~d~p-------~~p~~~~l~~  142 (166)
T 3jzv_A          108 WHQFRAPADEALGFLCMVNAERDKP-------QLPTEADLAM  142 (166)
T ss_dssp             CEEEECCTTSCEEEEEEEESSCCCC-------BCCCHHHHHH
T ss_pred             cEEeEeCCCCCEEEEEEEccCCCCC-------CCCCHHHHHH
Confidence            7777775566788877765543222       5557777753

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=96.25  E-value=0.12  Score=39.98  Aligned_cols=94  Identities=12%  Similarity=0.065  Sum_probs=63.5

Q ss_pred             CCccceec-CCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeec
Q 020448          174 SEEIKRAE-TDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVS  250 (326)
Q Consensus       174 ~~~iP~~~-~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~  250 (326)
                      .+++|... .+|...++++..           ..+.+..+.+.+|.....-.. ...-++||++|++++  +++ ...+.
T Consensus        11 ~~~~~~~~~~~g~~~~~l~~~-----------~~~~~~~~~~~pg~~~~~H~H-~~~e~~~vl~G~~~~~~~~~-~~~l~   77 (116)
T 2pfw_A           11 GEQTEIEDIGGGLKRQMLGFN-----------HELMAVKIWFDKGAEGYVHAH-RHSQVSYVVEGEFHVNVDGV-IKVLT   77 (116)
T ss_dssp             TTTSCCEECSTTEEEEEEEEE-----------TTEEEEEEEECTTEEEEEECC-SSEEEEEEEEECEEEEETTE-EEEEC
T ss_pred             ccCceeeeCCCCeEEEEEecC-----------CceEEEEEEECCCCcCCcEEC-CcceEEEEEeeEEEEEECCE-EEEeC
Confidence            34455443 356677777521           135677888999987543222 245799999999876  442 36899


Q ss_pred             CccEEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448          251 AHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       251 ~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      +||.+.+..+..=.+.+.  .+++++.+...+
T Consensus        78 ~Gd~~~ip~~~~H~~~~~--~~~~~l~v~~p~  107 (116)
T 2pfw_A           78 AGDSFFVPPHVDHGAVCP--TGGILIDTFSPA  107 (116)
T ss_dssp             TTCEEEECTTCCEEEEES--SCEEEEEEEESC
T ss_pred             CCCEEEECcCCceeeEeC--CCcEEEEEECCc
Confidence            999999998777777775  368887776543

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=96.24  E-value=0.024  Score=45.78  Aligned_cols=91  Identities=14%  Similarity=0.264  Sum_probs=59.2

Q ss_pred             CCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc--Cc-CceeecCccEEEEcC
Q 020448          183 DGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TV-NSSAVSAHNVLVLSL  259 (326)
Q Consensus       183 ~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g~-~~~~l~~~d~~~l~~  259 (326)
                      .|...+++....       .....+.+..+.+.+|.....-... ..-.+||++|++++.  -. +...+.+||.+.+..
T Consensus        22 ~g~~~~~l~~~~-------~~~~~~~~~~~~~~pg~~~~~H~H~-~~e~~~vl~G~~~~~~~~~~~~~~l~~Gd~~~ip~   93 (145)
T 3ht1_A           22 KETTHRKLIDTP-------DGADRFVLTEFEVSPNGSTPPHFHE-WEHEIYVLEGSMGLVLPDQGRTEEVGPGEAIFIPR   93 (145)
T ss_dssp             EEEEEEEEECGG-------GTCCSEEEEEEEEEEEEECCCEECS-SCEEEEEEEECEEEEEGGGTEEEEECTTCEEEECT
T ss_pred             CCcEEEEEEccC-------CCCCcEEEEEEEECCCCcCCCccCC-CceEEEEEEeEEEEEEeECCEEEEECCCCEEEECC
Confidence            456778877642       1233566777788887753322222 235679999998765  21 226799999999987


Q ss_pred             CCeEEEEecCCCCeEEEEEeec
Q 020448          260 GDGLSAWNRSSKQLRFVLIAGQ  281 (326)
Q Consensus       260 g~~l~i~a~~~~~a~~LL~~G~  281 (326)
                      +..=.+.+.++++++++++...
T Consensus        94 ~~~H~~~~~~~~~~~~l~i~~~  115 (145)
T 3ht1_A           94 GEPHGFVTGPGQTCRFLVVAPC  115 (145)
T ss_dssp             TCCBEEECCTTCCEEEEEEEES
T ss_pred             CCeEEeEcCCCCCEEEEEEECC
Confidence            7665666655567888777643

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=96.24  E-value=0.38  Score=47.71  Aligned_cols=76  Identities=11%  Similarity=0.071  Sum_probs=52.2

Q ss_pred             cEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc-----CcC--ceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG-----TVN--SSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       207 ~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~-----g~~--~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      +.+..+.|++|+-...-..+.-.-++||++|++.|.     |+.  ...|.+||+.++..+-.....+. ++++++|.|.
T Consensus       323 iS~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~GDVfvvP~g~~h~~~ag-~e~~~~l~f~  401 (465)
T 3qac_A          323 LSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLVVVPQNFAIVKQAF-EDGFEWVSFK  401 (465)
T ss_dssp             CEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEE-EEEEEEEEEE
T ss_pred             eeEEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEecCCeEEEECCCcEEEEEcC-CCCeEEEEEe
Confidence            567788899998766444444568999999999873     211  13488999999987765444443 4578887775


Q ss_pred             eccC
Q 020448          280 GQPL  283 (326)
Q Consensus       280 G~pl  283 (326)
                      -.+.
T Consensus       402 ~s~n  405 (465)
T 3qac_A          402 TSEN  405 (465)
T ss_dssp             SSTT
T ss_pred             cCCC
Confidence            4443

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=96.24  E-value=0.12  Score=40.75  Aligned_cols=83  Identities=13%  Similarity=0.117  Sum_probs=59.6

Q ss_pred             CCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCC
Q 020448          183 DGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLG  260 (326)
Q Consensus       183 ~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g  260 (326)
                      .|...+++.+.            .+.+..+.+.+|.....-... ..-++||++|++++  ++ +...+.+||.+.+..+
T Consensus        29 ~G~~~~~~~~~------------~~~~~~~~~~pg~~~~~H~H~-~~e~~~vl~G~~~~~~~~-~~~~l~~Gd~~~ip~~   94 (126)
T 4e2g_A           29 PGFAMQAIQGK------------NLMLNWVRIEPNTEMPAHEHP-HEQAGVMLEGTLELTIGE-ETRVLRPGMAYTIPGG   94 (126)
T ss_dssp             TTEEEEEEECS------------SCEEEEEEECTTCEEEEECCS-SEEEEEEEEECEEEEETT-EEEEECTTEEEEECTT
T ss_pred             CCeEEEEEeCC------------CeEEEEEEECCCCcCCCccCC-CceEEEEEEeEEEEEECC-EEEEeCCCCEEEECCC
Confidence            36677776553            467778899999987644433 36899999999887  34 2268999999999977


Q ss_pred             CeEEEEecCCCCeEEEEEee
Q 020448          261 DGLSAWNRSSKQLRFVLIAG  280 (326)
Q Consensus       261 ~~l~i~a~~~~~a~~LL~~G  280 (326)
                      ..=.+.+.++ +++++.+..
T Consensus        95 ~~H~~~~~~~-~~~~l~v~~  113 (126)
T 4e2g_A           95 VRHRARTFED-GCLVLDIFS  113 (126)
T ss_dssp             CCEEEECCTT-CEEEEEEEE
T ss_pred             CcEEeEECCC-CEEEEEEEC
Confidence            7666776533 577776654

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=96.18  E-value=0.04  Score=44.65  Aligned_cols=72  Identities=24%  Similarity=0.361  Sum_probs=53.2

Q ss_pred             cEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       207 ~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      ..+..+.+.+|.....-...+..-++||++|++++  ++ +...|.+||.+.+..+..=.+.+.++++++++.+.
T Consensus        57 ~~~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~-~~~~l~~Gd~i~i~~~~~H~~~n~~~~~~~~l~v~  130 (133)
T 1o4t_A           57 RLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNG-KDVPIKAGDVCFTDSGESHSIENTGNTDLEFLAVI  130 (133)
T ss_dssp             EEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEETT-EEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEE
T ss_pred             EEEEEEEECCCCccCceECCCccEEEEEEeCEEEEEECC-EEEEeCCCcEEEECCCCcEEeEECCCCCEEEEEEE
Confidence            45667899999876543333456899999999876  44 23689999999999887767776555678877664

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=96.17  E-value=0.09  Score=40.70  Aligned_cols=86  Identities=15%  Similarity=0.201  Sum_probs=59.8

Q ss_pred             cCCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEc
Q 020448          181 ETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLS  258 (326)
Q Consensus       181 ~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~  258 (326)
                      ..++...|.+...           ..+.+..+.+.+|.....-.. ...-++||++|++.+  +++ ...+.+||.+.+.
T Consensus        25 ~~~~~~~~~l~~~-----------~~~~~~~~~~~~g~~~~~H~H-~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd~~~ip   91 (115)
T 1yhf_A           25 EQDQMLSRTLVQR-----------QDLGITVFSLDKGQEIGRHSS-PGDAMVTILSGLAEITIDQE-TYRVAEGQTIVMP   91 (115)
T ss_dssp             CTTCEEEEEEEEE-----------TTEEEEEEEECTTCEEEEECC-SSEEEEEEEESEEEEEETTE-EEEEETTCEEEEC
T ss_pred             cCCCeEEEEEEeC-----------CceEEEEEEECCCCccCCEEC-CCcEEEEEEeCEEEEEECCE-EEEECCCCEEEEC
Confidence            3456666766532           135667788999987653332 346899999999876  442 2679999999999


Q ss_pred             CCCeEEEEecCCCCeEEEEEeec
Q 020448          259 LGDGLSAWNRSSKQLRFVLIAGQ  281 (326)
Q Consensus       259 ~g~~l~i~a~~~~~a~~LL~~G~  281 (326)
                      .+..=.+.+.  .+++++++.-.
T Consensus        92 ~~~~H~~~~~--~~~~~~~v~~~  112 (115)
T 1yhf_A           92 AGIPHALYAV--EAFQMLLVVVK  112 (115)
T ss_dssp             TTSCEEEEES--SCEEEEEEEEC
T ss_pred             CCCCEEEEEC--CCceEEEEEEc
Confidence            8877777775  36887776543

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=96.16  E-value=0.022  Score=54.95  Aligned_cols=200  Identities=14%  Similarity=0.147  Sum_probs=116.4

Q ss_pred             CCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEE
Q 020448           74 SLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQ  153 (326)
Q Consensus        74 ~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQ  153 (326)
                      ...|=+...-..+.|+.-.++|-|.. +-|-||++|+-..----|..-.+++||+-..-+|  ..|.=.|.+++++..|=
T Consensus        98 ~~t~~L~a~~~~l~PG~~~~~HrH~~-~ev~~VleG~G~~~~vdG~~~~~~~GD~v~iP~g--~~H~~~N~gde~l~~l~  174 (368)
T 3nw4_A           98 YISPTMWAAIQYLGPRETAPEHRHSQ-NAFRFVVEGEGVWTVVNGDPVRMSRGDLLLTPGW--CFHGHMNDTDQPMAWID  174 (368)
T ss_dssp             CSSSSCEEEEEEECTTCEEEEEEESS-CEEEECSSCEEEEEEETTEEEEEETTCEEEECTT--CCEEEEECSSSCEEEEE
T ss_pred             ccCCceEEEEEEECCCCccCceeccc-ceEEEEEecceEEEEECCEEEEEeCCCEEEECCC--CcEEeEeCCCCCeEEEE
Confidence            34677777777788888889999986 5789999998742222357889999999888665  66888887777776532


Q ss_pred             E-------Ee------ccCCCC-CCCCCC---------cccc-------CCCccce-----------------e------
Q 020448          154 L-------WI------NLSSSD-KMIEPR---------YQEI-------PSEEIKR-----------------A------  180 (326)
Q Consensus       154 L-------Wi------nLP~~~-k~~~P~---------Y~~~-------~~~~iP~-----------------~------  180 (326)
                      +       ++      +-|... .-.++.         |..+       ....-|.                 .      
T Consensus       175 v~D~Pl~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~sP~~~ypw~~~~~aL~~~~~l~~~~~~  254 (368)
T 3nw4_A          175 GLDIPFSQQMDVGFFEFGSDRVTDYATPNFSRGERLWCHPGLRPLSGLQNTVASPIGAYRWEFTDRALTEQLLLEDEGQP  254 (368)
T ss_dssp             EECHHHHHHHTCCCEEECCSSCSCCCCCSSCHHHHHHCSTTCCCGGGCSCCSSCSCCEECHHHHHHHHHHHHHHHHTTCS
T ss_pred             ecchHHHhhcCceeeecccccccccccccCCcccchhhccccccccccCCCCCCCceecCHHHHHHHHHhhhhhhhccCC
Confidence            1       11      111100 000010         1000       0000110                 0      


Q ss_pred             c-CC-CeE-EEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecce--EEcCcCceeecCccEE
Q 020448          181 E-TD-GVE-VRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEG--VFGTVNSSAVSAHNVL  255 (326)
Q Consensus       181 ~-~~-g~~-~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~--~i~g~~~~~l~~~d~~  255 (326)
                      . .+ |.. ++.+-...   .+++  ..-+...-..|.+|.+....- .......||++|+.  +|+++ ....++||.+
T Consensus       255 ~~~~~g~~~~~y~NP~t---g~~~--~pti~~~~~~L~pG~~t~~hR-ht~s~Vy~V~eG~G~~~I~~~-~~~w~~gD~f  327 (368)
T 3nw4_A          255 ATVAPGHAAIRYVNPTT---GGDV--MPTLRCEFHRLRAGTETATRN-EVGSTVFQVFEGAGAVVMNGE-TTKLEKGDMF  327 (368)
T ss_dssp             CSSBTTEEEEECBCTTT---SSBS--SSSCEEEEEEECTTCBCCCEE-ESSCEEEEEEESCEEEEETTE-EEEECTTCEE
T ss_pred             CcccCceEEEEEeCCCC---CCCc--chhHHhheEEECCCCccCCee-ccccEEEEEEeCcEEEEECCE-EEEecCCCEE
Confidence            0 00 222 22221111   1111  123455556789998643111 12346688998875  45662 2678999999


Q ss_pred             EEcCCCeEEEEecCCCCeEEEEEeeccCCC
Q 020448          256 VLSLGDGLSAWNRSSKQLRFVLIAGQPLNE  285 (326)
Q Consensus       256 ~l~~g~~l~i~a~~~~~a~~LL~~G~pl~e  285 (326)
                      .+......++.+.  +++.++-++=+|+-+
T Consensus       328 vvP~w~~h~~~n~--~~a~Lf~~~D~Pl~~  355 (368)
T 3nw4_A          328 VVPSWVPWSLQAE--TQFDLFRFSDAPIME  355 (368)
T ss_dssp             EECTTCCEEEEES--SSEEEEEEESHHHHH
T ss_pred             EECCCCcEEEEeC--CCEEEEEEeCHHHHH
Confidence            9998888898884  578888888777643

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=96.15  E-value=0.033  Score=51.41  Aligned_cols=88  Identities=14%  Similarity=0.083  Sum_probs=68.4

Q ss_pred             CCceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCe
Q 020448           58 GDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGI  137 (326)
Q Consensus        58 G~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI  137 (326)
                      |.++..+-+.|..    .++=..+.-+++.|++-+|.|-|..+|=.-|||+|+...++. |..-.+++||+-||.++  +
T Consensus       169 g~~~~~r~l~p~~----~~~d~~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l~-~~~~~V~~GD~i~~~~~--~  241 (266)
T 4e2q_A          169 GEVFELRKLLPMS----VAYDFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLG-DNWYPVQAGDVIWMAPF--V  241 (266)
T ss_dssp             TCCSEEEESSCCS----TTCSEEEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEET-TEEEEEETTCEEEECTT--C
T ss_pred             CCcEEEEEccCcc----cccceEEEEEEECCCcCcCCceEcccceEEEEEeceEEEEEC-CEEEEecCCCEEEECCC--C
Confidence            4556666555443    244556677788999889988888999999999999999876 34678999999999988  7


Q ss_pred             EEEeeeCCCCceeEE
Q 020448          138 VHSEMPAGEGVQNGL  152 (326)
Q Consensus       138 ~HsE~~~~~~~~~~l  152 (326)
                      -|.=.|..++++++|
T Consensus       242 ~h~~~n~G~e~~~yl  256 (266)
T 4e2q_A          242 PQWYAALGKTRSRYL  256 (266)
T ss_dssp             CEEEEEESSSCEEEE
T ss_pred             cEEEEeCCCCCEEEE
Confidence            788787766777665

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=96.12  E-value=0.0084  Score=53.98  Aligned_cols=69  Identities=17%  Similarity=0.235  Sum_probs=52.9

Q ss_pred             CCC-CCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCC
Q 020448           86 VSP-PAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSS  160 (326)
Q Consensus        86 ~~~-~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~  160 (326)
                      +.| +...++|.|.+ |-+.||++|+++-.-. |..-.+++||+-|+.+|  +.|+=.|.++.++..  |||..|.
T Consensus       152 ~~p~g~~~~~H~H~~-~e~~~Vl~G~~~~~i~-~~~~~l~~Gd~i~ip~~--~~H~~~n~~~~~~~~--l~v~~p~  221 (243)
T 3h7j_A          152 IPGNGGEMPFHKHRN-EQIGICIGGGYDMTVE-GCTVEMKFGTAYFCEPR--EDHGAINRSEKESKS--INIFFPP  221 (243)
T ss_dssp             ECTTTEEEEEECCSS-EEEEEECSSCEEEEET-TEEEEECTTCEEEECTT--CCEEEEECSSSCEEE--EEEEESC
T ss_pred             ECCCCCcCCCEeCCC-cEEEEEEECEEEEEEC-CEEEEECCCCEEEECCC--CcEEeEeCCCCCEEE--EEEEcCC
Confidence            566 66688999997 5578999999987643 45678999999999998  789988877666655  5664453

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=96.11  E-value=0.067  Score=45.92  Aligned_cols=99  Identities=12%  Similarity=0.197  Sum_probs=66.1

Q ss_pred             ceecCCCeEEEEEeCCCCCCcCc-ccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc-----CcCceeecC
Q 020448          178 KRAETDGVEVRIIAGESMGVRSP-VYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG-----TVNSSAVSA  251 (326)
Q Consensus       178 P~~~~~g~~~rViaG~~~g~~sp-~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~-----g~~~~~l~~  251 (326)
                      +....+++++|++-. + +..++ ++....+.+..+.|++|+....- ..+..-++||++|++++.     +.....|++
T Consensus        13 ~~~~~~~G~~~~~~~-~-~~~~~~~~~~~~~~~~~~~l~pg~~~~pH-h~~a~E~~yVl~G~~~v~v~~~~~~~~~~l~~   89 (178)
T 1dgw_A           13 TLFKNQHGSLRLLQR-F-NEDTEKLENLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQ   89 (178)
T ss_dssp             EEEEETTEEEEEECC-T-TSSCGGGGGGTTEEEEEEEECTTEEEEEE-EESSEEEEEEEESEEEEEEEETTEEEEEEEET
T ss_pred             cceEcCCCEEEEEcc-c-CCcchhcCCcCcEEEEEEEecCCcEecCc-CCCCCEEEEEEeEEEEEEEEeCCCcEEEEECC
Confidence            334567789998743 1 11222 33334578888999999875432 334568999999998873     112367999


Q ss_pred             ccEEEEcCCCeEEEEecCCC-CeEEEEEe
Q 020448          252 HNVLVLSLGDGLSAWNRSSK-QLRFVLIA  279 (326)
Q Consensus       252 ~d~~~l~~g~~l~i~a~~~~-~a~~LL~~  279 (326)
                      ||.+.+..|..-.+.+.+++ .++++.+.
T Consensus        90 GDv~~~P~g~~H~~~N~g~~~~l~~l~v~  118 (178)
T 1dgw_A           90 GDAIKIQAGTPFYLINPDNNQNLRILKFA  118 (178)
T ss_dssp             TEEEEECTTCCEEEEECCSSSCEEEEEEE
T ss_pred             CCEEEECCCCeEEEEeCCCCCCEEEEEEE
Confidence            99999998877777775443 56666664

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=96.07  E-value=0.066  Score=45.89  Aligned_cols=74  Identities=9%  Similarity=0.096  Sum_probs=52.6

Q ss_pred             CccEEEEEEECCCCeEEEe--cCCCCeEEEEEeecceEE--cCc---CceeecCccEEEEcCCCeEEEEec-CCCCeEEE
Q 020448          205 TPTMFLDFTLKPRAQIHQS--IPETWNAFVYTIEGEGVF--GTV---NSSAVSAHNVLVLSLGDGLSAWNR-SSKQLRFV  276 (326)
Q Consensus       205 ~~~~~~di~L~~g~~~~~~--~p~~~~~~lyVl~G~~~i--~g~---~~~~l~~~d~~~l~~g~~l~i~a~-~~~~a~~L  276 (326)
                      ..+.++.+.+++|.....+  ......-++||++|++.+  ++.   +...|.+||.+.+..+..=.+.+. +++++++|
T Consensus       115 ~~~~~~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~~~~~~~~H~~~n~~~~~~~~~l  194 (198)
T 2bnm_A          115 PSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFTAAKGTGSAKLI  194 (198)
T ss_dssp             TTCEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEECTTCCEEEEESTTSCCEEEE
T ss_pred             CcceEEEEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcccEEECCCCEEEeCCCCceEEEecCCCCCeEEE
Confidence            4577888899999865421  111225899999999877  341   236899999999987766666665 55678887


Q ss_pred             EE
Q 020448          277 LI  278 (326)
Q Consensus       277 L~  278 (326)
                      ++
T Consensus       195 ~v  196 (198)
T 2bnm_A          195 AV  196 (198)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=96.01  E-value=0.13  Score=50.62  Aligned_cols=99  Identities=11%  Similarity=0.143  Sum_probs=67.6

Q ss_pred             ceecCCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcC-----cCceeecCc
Q 020448          178 KRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGT-----VNSSAVSAH  252 (326)
Q Consensus       178 P~~~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g-----~~~~~l~~~  252 (326)
                      +.+..+++++|++.. +......+.....+.+..+.|++|+....- ..+..-++||++|++.++-     .....+++|
T Consensus        33 ~~~~se~G~ir~l~~-~~~~~~~l~~~~~~s~~~~~l~PGg~~~pH-h~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~G  110 (434)
T 2ea7_A           33 TLYRNEWGHIRVLQR-FDQRSKQMQNLENYRVVEFKSKPNTLLLPH-HADADFLLVVLNGTAVLTLVNPDSRDSYILEQG  110 (434)
T ss_dssp             EEEEETTEEEEEECC-STTTCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEECSSCEEEEEEETT
T ss_pred             ceEEcCCEEEEEEec-cCCcccccCccccEEEEEEEecCCcCccCc-cCCCceEEEEEecEEEEEEEeCCCCEEEEeCCC
Confidence            445667789999743 111112244555688999999999876544 3455689999999988741     122679999


Q ss_pred             cEEEEcCCCeEEEEecC-CCCeEEEEE
Q 020448          253 NVLVLSLGDGLSAWNRS-SKQLRFVLI  278 (326)
Q Consensus       253 d~~~l~~g~~l~i~a~~-~~~a~~LL~  278 (326)
                      |++.+..|..-.+.+.+ ++++++|.+
T Consensus       111 Dv~~iP~G~~H~~~N~g~~e~l~~l~~  137 (434)
T 2ea7_A          111 HAQKIPAGTTFFLVNPDDNENLRIIKL  137 (434)
T ss_dssp             EEEEECTTCEEEEEECCSSCCEEEEEE
T ss_pred             CEEEECCCccEEEEeCCCCCCeEEEEE
Confidence            99999988776677654 456776654

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=95.99  E-value=0.16  Score=46.90  Aligned_cols=101  Identities=11%  Similarity=0.006  Sum_probs=68.8

Q ss_pred             cCCCccceecCCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceee
Q 020448          172 IPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAV  249 (326)
Q Consensus       172 ~~~~~iP~~~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l  249 (326)
                      +++.+.+.+...|...++++..       ......+.++.+.+.+|.....-......-++||++|++++  +| +...+
T Consensus        18 ~r~~~~~~~~~~g~~~~~l~~~-------~~~~~~~~~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~-~~~~l   89 (337)
T 1y3t_A           18 LRSGEGERYLFGRQVATVMANG-------RSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDG-ERYLL   89 (337)
T ss_dssp             ECTTCSEEEEETTEEEEEEECH-------HHHTSSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEETT-EEEEE
T ss_pred             ecCCCccEEEECCeEEEEEeec-------CCCCCeEEEEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEECC-EEEEE
Confidence            4444544444456677777632       11234567788899999876554444356899999999876  44 23689


Q ss_pred             cCccEEEEcCCCeEEEEecCCCCeEEEEEeec
Q 020448          250 SAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQ  281 (326)
Q Consensus       250 ~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~  281 (326)
                      .+||.+.+..+..-.+.+.++ .++++++...
T Consensus        90 ~~Gd~~~~p~~~~H~~~n~~~-~~~~~~~~~p  120 (337)
T 1y3t_A           90 ISGDYANIPAGTPHSYRMQSH-RTRLVSYTMK  120 (337)
T ss_dssp             CTTCEEEECTTCCEEEEECST-TEEEEEEEET
T ss_pred             CCCCEEEECCCCcEEEEECCC-CeEEEEEECC
Confidence            999999999887777777644 6888877443

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=95.97  E-value=0.029  Score=49.08  Aligned_cols=70  Identities=13%  Similarity=0.249  Sum_probs=53.6

Q ss_pred             ccCCCCCCCCCCCCCCceEEEEEeeceEEEe--cCC---CC--eeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEE
Q 020448           84 FSVSPPAGFPDHPHRGFETVTYMLQGGITHQ--DFS---GH--KGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLW  155 (326)
Q Consensus        84 ~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~--DS~---Gn--~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLW  155 (326)
                      ..+.++...++|-|.+.+-+.||++|+++..  |+.   +.  ...+++||+-|+.+|  +.|.-.|..+..++.+=++
T Consensus        77 ~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~iP~g--~~H~~~N~g~~~~~~l~v~  153 (201)
T 1fi2_A           77 VDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRG--LMHFQFNVGKTEAYMVVSF  153 (201)
T ss_dssp             EEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEEECTT--CCEEEEECSSSCEEEEEEE
T ss_pred             EEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEEECCC--CeEEEEeCCCCCEEEEEEE
Confidence            3456666678999998766779999998763  553   44  578999999999987  5899988776777776554

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=95.97  E-value=0.17  Score=43.98  Aligned_cols=98  Identities=15%  Similarity=0.115  Sum_probs=65.5

Q ss_pred             CCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc---C----cC--ceeecCc
Q 020448          182 TDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG---T----VN--SSAVSAH  252 (326)
Q Consensus       182 ~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~---g----~~--~~~l~~~  252 (326)
                      ..|..++++...    .-|......+.+..+.+.+|.....-..+...-++||++|++++.   +    .+  ...+.+|
T Consensus        51 ~~G~~v~~~~~~----~~p~l~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~G  126 (201)
T 1fi2_A           51 PNGSAVTELDVA----EWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAG  126 (201)
T ss_dssp             TTSEEEEEESTT----TCGGGTTSSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETT
T ss_pred             CCCcEEEEEecc----cCCCcccCceEEEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCC
Confidence            345667776332    223333345778889999998765443444468999999998762   2    12  3579999


Q ss_pred             cEEEEcCCCeEEEEecCCCCeEEEEEeeccC
Q 020448          253 NVLVLSLGDGLSAWNRSSKQLRFVLIAGQPL  283 (326)
Q Consensus       253 d~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl  283 (326)
                      |.+.+..+..-.+.+.+++++++|.+...+.
T Consensus       127 D~~~iP~g~~H~~~N~g~~~~~~l~v~~~~~  157 (201)
T 1fi2_A          127 ETFVIPRGLMHFQFNVGKTEAYMVVSFNSQN  157 (201)
T ss_dssp             CEEEECTTCCEEEEECSSSCEEEEEEESSSC
T ss_pred             CEEEECCCCeEEEEeCCCCCEEEEEEECCCC
Confidence            9999997776666665556788887765553

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=95.95  E-value=0.011  Score=45.45  Aligned_cols=59  Identities=15%  Similarity=0.035  Sum_probs=46.9

Q ss_pred             cCCCCCCCCCCCCCC-ceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCC
Q 020448           85 SVSPPAGFPDHPHRG-FETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAG  145 (326)
Q Consensus        85 ~~~~~~GF~~HPHrG-~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~  145 (326)
                      .+.++..++.|.|.. .|++-||++|+++..-.-|....+++||+-|+.+|  +.|+-.+..
T Consensus        39 ~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~~~~~l~~Gd~~~ip~~--~~H~~~~~~   98 (110)
T 2q30_A           39 TFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGDAVIPAPRGAVLVAPIS--TPHGVRAVT   98 (110)
T ss_dssp             EECTTCEEEEECCSSSCEEEEEEEESCEEEECGGGCEEEECTTEEEEEETT--SCEEEEESS
T ss_pred             EECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCCEEEEECCCCEEEeCCC--CcEEEEEcC
Confidence            345666678899986 78878999999988754357789999999999986  678877654

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=95.95  E-value=0.089  Score=44.65  Aligned_cols=96  Identities=17%  Similarity=0.125  Sum_probs=65.5

Q ss_pred             CceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeE
Q 020448           59 DGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIV  138 (326)
Q Consensus        59 ~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~  138 (326)
                      .|+..+.+++...-..-..|.+ -...+.|+...++|-|.. +-+-||++|++...- -|..-.+++||+-|+.+|  +.
T Consensus        37 ~g~~~~~L~~~~~g~~~~~~~~-~~~~l~pG~~~~~H~H~~-~E~~~Vl~G~~~~~i-~~~~~~l~~Gd~i~ip~~--~~  111 (167)
T 3ibm_A           37 SGARRQTLVGRPAGQEAPAFET-RYFEVEPGGYTTLERHEH-THVVMVVRGHAEVVL-DDRVEPLTPLDCVYIAPH--AW  111 (167)
T ss_dssp             CCEEEEEEECTTTTCCSSSEEE-EEEEECTTCBCCCBBCSS-CEEEEEEESEEEEEE-TTEEEEECTTCEEEECTT--CC
T ss_pred             CCcEEEEEECCCCCCCCCcEEE-EEEEECCCCCCCCccCCC-cEEEEEEeCEEEEEE-CCEEEEECCCCEEEECCC--Cc
Confidence            4777777777553111234433 344566777789999975 556799999988752 244678999999999986  78


Q ss_pred             EEeeeCC-CCceeEEEEEeccCCC
Q 020448          139 HSEMPAG-EGVQNGLQLWINLSSS  161 (326)
Q Consensus       139 HsE~~~~-~~~~~~lQLWinLP~~  161 (326)
                      |.-.|.. +.++.++-+-  -|..
T Consensus       112 H~~~n~~~~~~~~~l~i~--~~~~  133 (167)
T 3ibm_A          112 HQIHATGANEPLGFLCIV--DSDR  133 (167)
T ss_dssp             EEEEEESSSCCEEEEEEE--ESSC
T ss_pred             EEEEeCCCCCCEEEEEEE--eCCc
Confidence            9988876 6677665443  3543

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=95.92  E-value=0.064  Score=45.89  Aligned_cols=91  Identities=12%  Similarity=0.024  Sum_probs=62.0

Q ss_pred             CCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecC-CCCeEEEEEeecceEE--cCcCceeecCccEEEEcC
Q 020448          183 DGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIP-ETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSL  259 (326)
Q Consensus       183 ~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p-~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~  259 (326)
                      .+...++++..        .....+.++.+.+++|........ .+..-++||++|++.+  ++ +...|.+||.+.+..
T Consensus        88 ~g~~~~~l~~~--------~~~~~~~~~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~-~~~~l~~GD~i~i~~  158 (192)
T 1y9q_A           88 LNMKIHTLFPY--------AADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDE-QWHELQQGEHIRFFS  158 (192)
T ss_dssp             TTEEEEEEEEE--------ETTTTEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEETT-EEEEECTTCEEEEEC
T ss_pred             CCEEEEEeccC--------CCCCcEEEEEEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEECC-EEEEeCCCCEEEEcC
Confidence            44556666432        123456777889999987653222 2346899999999877  44 236899999999997


Q ss_pred             CCeEEEEecCCCCeEEEEEeeccC
Q 020448          260 GDGLSAWNRSSKQLRFVLIAGQPL  283 (326)
Q Consensus       260 g~~l~i~a~~~~~a~~LL~~G~pl  283 (326)
                      +..=.+.+.+++++ +|++--.|-
T Consensus       159 ~~~H~~~n~~~~~~-~l~v~~~~~  181 (192)
T 1y9q_A          159 DQPHGYAAVTEKAV-FQNIVAYPR  181 (192)
T ss_dssp             SSSEEEEESSSCEE-EEEEEECCC
T ss_pred             CCCeEeECCCCCcE-EEEEEecCc
Confidence            77666777655667 777765553

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=95.89  E-value=0.25  Score=44.86  Aligned_cols=160  Identities=14%  Similarity=0.118  Sum_probs=83.4

Q ss_pred             CCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccC-CCCCCCCCCcccc
Q 020448           94 DHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLS-SSDKMIEPRYQEI  172 (326)
Q Consensus        94 ~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP-~~~k~~~P~Y~~~  172 (326)
                      .+||  -| +-|||+|+++=.| .|..-.++|||+-++-+|.=+.=+-   .+.....+-.|   + .. .-.+|.-..+
T Consensus        62 ~~p~--dE-~~~VleG~~~lt~-~g~~~~~~~Gd~~~ip~G~~~~w~~---~~~~~~~y~~~---~~~~-~p~~~~~~~i  130 (238)
T 3myx_A           62 AYPY--TE-MLVMHRGSVTLTS-GTDSVTLSTGESAVIGRGTQVRIDA---QPESLWAFCAS---TQAS-GPDKSGITAL  130 (238)
T ss_dssp             SCSS--EE-EEEEEESEEEEEE-TTEEEEEETTCEEEECTTCCEEEEE---CTTEEEEEEEE---CSCC-SCCCCSEEEE
T ss_pred             cCCC--cE-EEEEEEeEEEEEC-CCeEEEEcCCCEEEECCCCEEEEEe---cCCeEEEEEec---cCCC-CCCCCccEEe
Confidence            4666  34 5589999999999 6888899999999999997554321   11222233333   2 11 1122221111


Q ss_pred             CC--CccceecCCCeEEEEEeCCCCCCcCcccc--cCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCc--Cc
Q 020448          173 PS--EEIKRAETDGVEVRIIAGESMGVRSPVYT--RTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTV--NS  246 (326)
Q Consensus       173 ~~--~~iP~~~~~g~~~rViaG~~~g~~sp~~~--~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~--~~  246 (326)
                      ..  +.-|.....  --++++|+......-+..  ...+..=-....+|+.+.+  +-+..=|+|||+|+++|-..  +.
T Consensus       131 ~~~~~l~P~~~p~--p~~~l~G~P~~~~~~~~~~~~g~~~~GiW~~tpG~~~~~--~~~~~E~~~ILeG~v~lt~~~G~~  206 (238)
T 3myx_A          131 DRLALLTPSSPPD--PSIMISPLPQCRSNNLFEDTASTLRIGVWDSTPYERISR--PHKIHELMNLIEGRVVLSLENGSS  206 (238)
T ss_dssp             CTTCCCEEECCCC--GGGBSSCCCCEEEEEEEECSSSSCEEEEEEECCEEBCCE--ECSSCEEEEEEECCEEEEETTSCE
T ss_pred             cCCCCCCCCCCCC--hhheecCCchheeeEEEECCCCCEEEeEEEeCCCEEECC--cCCCCEEEEEEEeEEEEEeCCCCE
Confidence            11  001110000  012233321100000000  0111222234466653322  22345799999999988422  23


Q ss_pred             eeecCccEEEEcCCCeEEEEec
Q 020448          247 SAVSAHNVLVLSLGDGLSAWNR  268 (326)
Q Consensus       247 ~~l~~~d~~~l~~g~~l~i~a~  268 (326)
                      ..+.+||.+.|..|-..+-+..
T Consensus       207 ~~~~aGD~~~~P~G~~~tWev~  228 (238)
T 3myx_A          207 LTVNTGDTVFVAQGAPCKWTST  228 (238)
T ss_dssp             EEECTTCEEEECTTCEEEEEES
T ss_pred             EEECCCCEEEECCCCEEEEEEC
Confidence            6799999999998888877764

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=95.89  E-value=0.052  Score=46.56  Aligned_cols=87  Identities=20%  Similarity=0.210  Sum_probs=59.1

Q ss_pred             CCceEEEEecCCCCCCCCCceEEeecccCCCCCCCC---CCCCCCceEEEEEeeceEEEecCCC---CeeeeeCCcEEEE
Q 020448           58 GDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFP---DHPHRGFETVTYMLQGGITHQDFSG---HKGTIHTGDVQWM  131 (326)
Q Consensus        58 G~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~---~HPHrG~EtvTyvl~G~l~H~DS~G---n~~~i~~GdvQwM  131 (326)
                      ..|+....+.+......+.++++    .+.|+...+   .|.|.+ +-+.||++|+++-.-.-+   ..-.|++||+-++
T Consensus       100 ~~~~~~~~l~~~~~~~~~~~~~~----~~~pg~~~~~~~~h~h~~-~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~~~  174 (198)
T 2bnm_A          100 VDYYVYNCLVRTKRAPSLVPLVV----DVLTDNPDDAKFNSGHAG-NEFLFVLEGEIHMKWGDKENPKEALLPTGASMFV  174 (198)
T ss_dssp             STTEEEEECCCCTTSTTCEEEEE----EECCCCGGGCCCCCCCSS-CEEEEEEESCEEEEESCTTSCEEEEECTTCEEEE
T ss_pred             CCceEEEeeccCCCCCcceEEEE----EEcCCCCCcccccccCCC-eEEEEEEeeeEEEEECCcCCcccEEECCCCEEEe
Confidence            34677776665443445555543    244554444   689988 557799999988764323   5678999999999


Q ss_pred             ecCCCeEEEeeeC-CCCceeE
Q 020448          132 TAGRGIVHSEMPA-GEGVQNG  151 (326)
Q Consensus       132 tAGsGI~HsE~~~-~~~~~~~  151 (326)
                      .+|  +.|.-.|. ++.+++.
T Consensus       175 ~~~--~~H~~~n~~~~~~~~~  193 (198)
T 2bnm_A          175 EEH--VPHAFTAAKGTGSAKL  193 (198)
T ss_dssp             CTT--CCEEEEESTTSCCEEE
T ss_pred             CCC--CceEEEecCCCCCeEE
Confidence            775  77998887 6666654

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=95.87  E-value=0.057  Score=44.67  Aligned_cols=90  Identities=18%  Similarity=0.155  Sum_probs=61.4

Q ss_pred             ceEEEEecCCCC-CCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCe-eeeeCCcEEEEecCCCe
Q 020448           60 GAVVRRAIGRGD-LRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHK-GTIHTGDVQWMTAGRGI  137 (326)
Q Consensus        60 g~~v~r~~~~~~-~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~-~~i~~GdvQwMtAGsGI  137 (326)
                      ++.++.+++... ...+..    -...+.|+..+++|.|.+.| +.||++|++...-. |.. -.+++||+-|+.+|  +
T Consensus        32 ~~~~~~l~~~~~~~~~~~~----~~~~~~pg~~~~~H~H~~~E-~~~Vl~G~~~~~~~-~~~~~~l~~Gd~i~ip~~--~  103 (147)
T 2f4p_A           32 NVWVKMLVTDENGVFNTQV----YDVVFEPGARTHWHSHPGGQ-ILIVTRGKGFYQER-GKPARILKKGDVVEIPPN--V  103 (147)
T ss_dssp             CEEEEEEECCTTCSSSCEE----EEEEECTTCEECSEECTTCE-EEEEEEEEEEEEET-TSCCEEEETTCEEEECTT--C
T ss_pred             cEEEEEEECCCCCCCcEEE----EEEEECCCCccCceECCCce-EEEEEeCEEEEEEC-CEEEEEECCCCEEEECCC--C
Confidence            577777776542 122222    23345666667899999955 88999999987643 334 68999999999875  6


Q ss_pred             EEEeeeCCCCceeEEEEEeccC
Q 020448          138 VHSEMPAGEGVQNGLQLWINLS  159 (326)
Q Consensus       138 ~HsE~~~~~~~~~~lQLWinLP  159 (326)
                      .|+-.+..+.++..+  +|..|
T Consensus       104 ~H~~~n~~~~~~~~l--~v~~~  123 (147)
T 2f4p_A          104 VHWHGAAPDEELVHI--GISTQ  123 (147)
T ss_dssp             CEEEEEBTTBCEEEE--EEECC
T ss_pred             cEEeEeCCCCCEEEE--EEEcc
Confidence            898888766666554  45344

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=95.83  E-value=0.12  Score=40.68  Aligned_cols=73  Identities=11%  Similarity=0.076  Sum_probs=54.0

Q ss_pred             ccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448          206 PTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       206 ~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      .+.+..+.+++|.....-.. ...-++||++|++++  ++ +...+++||.+.+..+..=.+.+.  ++++++++--.|
T Consensus        35 ~~~v~~~~l~~G~~~~~H~H-~~~e~~~Vl~G~~~~~i~~-~~~~l~~Gd~i~ip~~~~H~~~~~--~~~~~~~~~v~p  109 (114)
T 3fjs_A           35 RLEVMRMVLPAGKQVGSHSV-AGPSTIQCLEGEVEIGVDG-AQRRLHQGDLLYLGAGAAHDVNAI--TNTSLLVTVVLV  109 (114)
T ss_dssp             TEEEEEEEECTTCEEEEECC-SSCEEEEEEESCEEEEETT-EEEEECTTEEEEECTTCCEEEEES--SSEEEEEEEECC
T ss_pred             CEEEEEEEECCCCccCceeC-CCcEEEEEEECEEEEEECC-EEEEECCCCEEEECCCCcEEEEeC--CCcEEEEEEEeC
Confidence            56778889999997764333 235899999999877  44 236899999999998877777775  467776655443

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=95.81  E-value=0.022  Score=52.54  Aligned_cols=70  Identities=19%  Similarity=0.207  Sum_probs=57.3

Q ss_pred             EeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEE
Q 020448           80 MLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGL  152 (326)
Q Consensus        80 ~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~l  152 (326)
                      .+..+.+.|++-.+.|.|.+.|=.-|||+|++...+. |..-.|++||+-||.+|  ..|+=.|..++++++|
T Consensus       192 ~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~~-~~~~~v~~GD~~~~~~~--~~h~~~n~g~~~~~yl  261 (278)
T 1sq4_A          192 HVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLN-QDWVEVEAGDFMWLRAF--CPQACYSGGPGRFRYL  261 (278)
T ss_dssp             EEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEET-TEEEEEETTCEEEEEES--CCEEEECCSSSCEEEE
T ss_pred             EEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEEC-CEEEEeCCCCEEEECCC--CCEEEEcCCCCCEEEE
Confidence            3556677888878877777787788999999999987 77889999999999988  5677777777777776

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=95.75  E-value=0.19  Score=41.84  Aligned_cols=97  Identities=14%  Similarity=0.268  Sum_probs=62.9

Q ss_pred             CCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCc--------CceeecC
Q 020448          182 TDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTV--------NSSAVSA  251 (326)
Q Consensus       182 ~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~--------~~~~l~~  251 (326)
                      ..|...+++.+..      ..-...+.+..+.+.+|.....-... ..-++||++|++.+  ++.        +...+.+
T Consensus        22 ~~G~~~~~l~~~~------~~g~~~~~~~~~~~~pg~~~~~H~H~-~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~   94 (163)
T 1lr5_A           22 IEGLSHITVAGAL------NHGMKEVEVWLQTISPGQRTPIHRHS-CEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQ   94 (163)
T ss_dssp             CTTEEEEEEECHH------HHCCSSEEEEEEEECTTCBCCEEEES-SCEEEEEEECCEEEEECCSSSSSCCSCEEEEECT
T ss_pred             CCCcceEEEeccc------cCCCCcEEEEEEEECCCCcCCCeECC-CCeEEEEEeCEEEEEECCccccccCccEEEEeCC
Confidence            3456666665531      01122466777889998865332222 34599999999877  341        2368999


Q ss_pred             ccEEEEcCCCeEEEEecC-CCCeEEEEEeeccCCC
Q 020448          252 HNVLVLSLGDGLSAWNRS-SKQLRFVLIAGQPLNE  285 (326)
Q Consensus       252 ~d~~~l~~g~~l~i~a~~-~~~a~~LL~~G~pl~e  285 (326)
                      ||.+.+..+..=.+.+.+ +++++++.+...|..+
T Consensus        95 Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~~~~  129 (163)
T 1lr5_A           95 NTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAK  129 (163)
T ss_dssp             TEEEEECTTCCEEEECCCSSSCEEEEEEEESSSCC
T ss_pred             CCEEEECCCCcEEeEeCCCCCCEEEEEEECCCCcc
Confidence            999999977766677654 4678888877665433

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=95.70  E-value=0.029  Score=46.91  Aligned_cols=92  Identities=16%  Similarity=0.042  Sum_probs=61.3

Q ss_pred             CceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCC-C-------CeeeeeCCcEEE
Q 020448           59 DGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFS-G-------HKGTIHTGDVQW  130 (326)
Q Consensus        59 ~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~-G-------n~~~i~~GdvQw  130 (326)
                      .|...+.+++... .....|.+ -...+.|+...++|-|...| +.||++|++...-.- +       ..-.+++||+-|
T Consensus        23 ~G~~~~~l~~~~~-~g~~~~~~-~~~~~~pg~~~~~H~H~~~E-~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~   99 (163)
T 1lr5_A           23 EGLSHITVAGALN-HGMKEVEV-WLQTISPGQRTPIHRHSCEE-VFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFS   99 (163)
T ss_dssp             TTEEEEEEECHHH-HCCSSEEE-EEEEECTTCBCCEEEESSCE-EEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEE
T ss_pred             CCcceEEEecccc-CCCCcEEE-EEEEECCCCcCCCeECCCCe-EEEEEeCEEEEEECCccccccCccEEEEeCCCCEEE
Confidence            4566665554321 11222322 23345666678899998877 889999998876432 1       456899999999


Q ss_pred             EecCCCeEEEeeeCC-CCceeEEEEE
Q 020448          131 MTAGRGIVHSEMPAG-EGVQNGLQLW  155 (326)
Q Consensus       131 MtAGsGI~HsE~~~~-~~~~~~lQLW  155 (326)
                      +.+|  +.|.-.|.. +.+++.+=+.
T Consensus       100 ip~~--~~H~~~n~~~~~~~~~l~i~  123 (163)
T 1lr5_A          100 IPVN--DPHQVWNSDEHEDLQVLVII  123 (163)
T ss_dssp             ECTT--CCEEEECCCSSSCEEEEEEE
T ss_pred             ECCC--CcEEeEeCCCCCCEEEEEEE
Confidence            9876  789988876 6677765444

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=95.64  E-value=0.39  Score=47.74  Aligned_cols=97  Identities=13%  Similarity=0.144  Sum_probs=67.5

Q ss_pred             cCCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc--CcC-----ceeecCcc
Q 020448          181 ETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TVN-----SSAVSAHN  253 (326)
Q Consensus       181 ~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g~~-----~~~l~~~d  253 (326)
                      ...+++++.+...    +=|.-....+.+..+.|++|+....-..+...-++||++|++.+.  +.+     ...|.+||
T Consensus       316 ~~~gG~v~~~~~~----~~P~L~~l~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GD  391 (476)
T 1fxz_A          316 NPQAGSVTTATSL----DFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGR  391 (476)
T ss_dssp             ETTTEEEEEECTT----TSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTC
T ss_pred             cCCCeEEEEeccc----cCcccccCcceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCC
Confidence            3456677766442    224333347888999999999765444444568999999998872  211     12499999


Q ss_pred             EEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448          254 VLVLSLGDGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       254 ~~~l~~g~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      ++.+..|..-.+.+ +++++.++.|.-.+
T Consensus       392 v~viP~G~~H~~~n-g~~~l~~l~f~~s~  419 (476)
T 1fxz_A          392 VLIVPQNFVVAARS-QSDNFEYVSFKTND  419 (476)
T ss_dssp             EEEECTTCEEEEEE-CSTTEEEEEEESSS
T ss_pred             EEEECCCCeEEEEe-CCCCEEEEEEECCC
Confidence            99999887777777 45678888887444

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=95.63  E-value=0.044  Score=45.70  Aligned_cols=77  Identities=12%  Similarity=0.175  Sum_probs=55.2

Q ss_pred             CccEEEEEEECCCCe-EEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCC-CeEEEEecCCCCeEEEEEee
Q 020448          205 TPTMFLDFTLKPRAQ-IHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLG-DGLSAWNRSSKQLRFVLIAG  280 (326)
Q Consensus       205 ~~~~~~di~L~~g~~-~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g-~~l~i~a~~~~~a~~LL~~G  280 (326)
                      ..+.++.+.+++|.. ...-......-++||++|++.+  ++ +...+.+||.+.+..+ ..=.+.+.+++++++|.+..
T Consensus        44 ~~~~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~-~~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~v~~  122 (162)
T 3l2h_A           44 RHMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMEN-DQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQ  122 (162)
T ss_dssp             CSEEEEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETT-EEEEECTTCEEEECTTSCCEEEECCSSSCEEEEEEEE
T ss_pred             CeEEEEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECC-EEEEeCCCCEEEECCCCceEEeEeCCCCCEEEEEEEC
Confidence            456777889999985 2111112345799999999877  44 2378999999999976 66667776567888888876


Q ss_pred             cc
Q 020448          281 QP  282 (326)
Q Consensus       281 ~p  282 (326)
                      .+
T Consensus       123 p~  124 (162)
T 3l2h_A          123 RL  124 (162)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=95.61  E-value=0.38  Score=45.14  Aligned_cols=114  Identities=13%  Similarity=0.070  Sum_probs=71.4

Q ss_pred             CCCCCCCccccCCCccceecCCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE
Q 020448          162 DKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF  241 (326)
Q Consensus       162 ~k~~~P~Y~~~~~~~iP~~~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i  241 (326)
                      +....|.+...- ++.+....+++.+|.+...      -++....+....+.+++|+....-...+..-++||++|++.+
T Consensus        14 ~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~------~~p~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~   86 (361)
T 2vqa_A           14 WGKDLPAFTYAF-SKTPLVLYDGGTTKQVGTY------NFPVSKGMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRI   86 (361)
T ss_dssp             TTTTSCCSEECG-GGSCCEEETTEEEEEESTT------TCTTCCSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEE
T ss_pred             CCCCCcceEEEc-ccCCceecCCceEEEeChh------hCccccceeeEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEE
Confidence            444445544322 2223233456777876432      122333467778899999865533333356899999999765


Q ss_pred             c-----Cc-CceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448          242 G-----TV-NSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       242 ~-----g~-~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      .     |+ ....+++||.+.+..+..-.+.+.++++++++.+.-.+
T Consensus        87 ~v~~~~g~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~v~~~~  133 (361)
T 2vqa_A           87 TLTSPEGKVEIADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDG  133 (361)
T ss_dssp             EEECTTSCEEEEEEETTEEEEECTTCEEEEEECSSSCEEEEEEESST
T ss_pred             EEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEECCC
Confidence            3     21 12579999999999887777777655678888765444

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=95.60  E-value=0.026  Score=51.27  Aligned_cols=71  Identities=13%  Similarity=0.136  Sum_probs=55.5

Q ss_pred             ccCCCCCCCCCCCCCCceEEEEEeeceEEEecC-------CCC------------eeeeeCCcEEEEecCCCeEEEeeeC
Q 020448           84 FSVSPPAGFPDHPHRGFETVTYMLQGGITHQDF-------SGH------------KGTIHTGDVQWMTAGRGIVHSEMPA  144 (326)
Q Consensus        84 ~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS-------~Gn------------~~~i~~GdvQwMtAGsGI~HsE~~~  144 (326)
                      ..+.|+.+.++|-|...+=+-||++|+++-.-+       -+.            ...++|||+-++.+  |+.|.=.|.
T Consensus        48 ~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~--g~~H~~~N~  125 (239)
T 2xlg_A           48 AQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPN--HYMHGFVNP  125 (239)
T ss_dssp             EEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECT--TEEEEEECC
T ss_pred             EEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEEECC--CCCEEEEeC
Confidence            345677788999999888888999999876542       223            56899999988876  699999998


Q ss_pred             CCCceeEEEEEe
Q 020448          145 GEGVQNGLQLWI  156 (326)
Q Consensus       145 ~~~~~~~lQLWi  156 (326)
                      ++.+++++=+|+
T Consensus       126 ~~~~~~~~l~~~  137 (239)
T 2xlg_A          126 TDKTLPIVFVWM  137 (239)
T ss_dssp             SSSCEEEEEEEE
T ss_pred             CCCCEEEEEEEE
Confidence            777788845776

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=95.58  E-value=0.096  Score=43.09  Aligned_cols=93  Identities=17%  Similarity=0.225  Sum_probs=61.1

Q ss_pred             ccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCc-----eeecCccEEEEcCCCeEEEEecCCCCeEEEEE
Q 020448          206 PTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNS-----SAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLI  278 (326)
Q Consensus       206 ~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~-----~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~  278 (326)
                      .+.++.+.+.+|.....-...+..-++||++|++.+  ++...     ..+.+||.+.+..+..=.+.+.++++++++.+
T Consensus        42 ~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~~~~~~~l~i  121 (148)
T 2oa2_A           42 HLQVTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAILIPAGTWHNVRNTGNRPLKLYSI  121 (148)
T ss_dssp             SCEEEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEEECTTCEEEEEECSSSCEEEEEE
T ss_pred             ceEEEEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEEECCCCcEEEEECCCCCEEEEEE
Confidence            356677789999865422223345899999999877  44221     67999999999988776677655567888877


Q ss_pred             eeccCCCceeeeCCcccCcHHHHHH
Q 020448          279 AGQPLNEPVVQYGPFVMNSQAEIDQ  303 (326)
Q Consensus       279 ~G~pl~epi~~~GpFVmnt~~ei~~  303 (326)
                      ...|-..    .| +|..++++-..
T Consensus       122 ~~~~~~~----~~-~~~~~~~~~~~  141 (148)
T 2oa2_A          122 YAPPQHP----HG-TVHETKAIAMA  141 (148)
T ss_dssp             EESCCSC----TT-CEESSHHHHHH
T ss_pred             ECCCCCC----CC-cEEcccchhhh
Confidence            6555321    23 45555555443

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=95.54  E-value=0.048  Score=46.08  Aligned_cols=82  Identities=16%  Similarity=0.212  Sum_probs=57.1

Q ss_pred             CccEEEEEEECCCCeEE-EecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCC--CeEEEEecCCCCeEEEEEe
Q 020448          205 TPTMFLDFTLKPRAQIH-QSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLG--DGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       205 ~~~~~~di~L~~g~~~~-~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g--~~l~i~a~~~~~a~~LL~~  279 (326)
                      ..+.+..+.+.+|+... .-...+..-++||++|++++  ++ +...|.+||.+.+..+  ..=.+.+.+++.+++|++.
T Consensus        41 ~~~~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~-~~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l~v~  119 (163)
T 3i7d_A           41 SQFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQ-GEHPMVPGDCAAFPAGDPNGHQFVNRTDAPATFLVVG  119 (163)
T ss_dssp             CSEEEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETT-EEEEECTTCEEEECTTCCCCBEEECCSSSCEEEEEEE
T ss_pred             CeEEEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECC-EEEEeCCCCEEEECCCCCcceEEEECCCCCEEEEEEE
Confidence            35677788999998542 11111224799999999877  44 2378999999999977  6556676556788988888


Q ss_pred             eccCCCcee
Q 020448          280 GQPLNEPVV  288 (326)
Q Consensus       280 G~pl~epi~  288 (326)
                      ..+- ..++
T Consensus       120 ~p~~-~d~~  127 (163)
T 3i7d_A          120 TRTP-TETA  127 (163)
T ss_dssp             ECCS-CEEE
T ss_pred             CCCC-CCcc
Confidence            7664 3344

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=95.52  E-value=0.041  Score=47.14  Aligned_cols=94  Identities=10%  Similarity=-0.076  Sum_probs=59.9

Q ss_pred             CCceEEEEecCCCCCCCCCceEEeecccCCCCCCCC--CCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCC
Q 020448           58 GDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFP--DHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGR  135 (326)
Q Consensus        58 G~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~--~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGs  135 (326)
                      +.|+..+.+.+......+.+++    ..+.|+...+  +|.|.+ +-+.||++|+++..-. |..-.|++||+-++.+| 
T Consensus        87 ~~g~~~~~l~~~~~~~~~~~~~----~~~~pg~~~~~~~H~h~~-~E~~~Vl~G~~~~~~~-~~~~~l~~GD~i~i~~~-  159 (192)
T 1y9q_A           87 DLNMKIHTLFPYAADTGLEIFE----ITLLDHHQQMSSPHALGV-IEYIHVLEGIMKVFFD-EQWHELQQGEHIRFFSD-  159 (192)
T ss_dssp             CTTEEEEEEEEEETTTTEEEEE----EEECTTCEEEECCCSTTC-EEEEEEEESCEEEEET-TEEEEECTTCEEEEECS-
T ss_pred             CCCEEEEEeccCCCCCcEEEEE----EEECCCCCccCCCCCCCC-EEEEEEEEeEEEEEEC-CEEEEeCCCCEEEEcCC-
Confidence            4567666665543333344333    2344554444  555544 5577999999987642 55679999999999885 


Q ss_pred             CeEEEeeeCCCCceeEEEEEeccCCCC
Q 020448          136 GIVHSEMPAGEGVQNGLQLWINLSSSD  162 (326)
Q Consensus       136 GI~HsE~~~~~~~~~~lQLWinLP~~~  162 (326)
                       +.|.=.|..+.++   =|||..|...
T Consensus       160 -~~H~~~n~~~~~~---~l~v~~~~~~  182 (192)
T 1y9q_A          160 -QPHGYAAVTEKAV---FQNIVAYPRR  182 (192)
T ss_dssp             -SSEEEEESSSCEE---EEEEEECCC-
T ss_pred             -CCeEeECCCCCcE---EEEEEecCcc
Confidence             7799888766666   4666555443

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=95.50  E-value=0.031  Score=44.23  Aligned_cols=70  Identities=19%  Similarity=0.211  Sum_probs=51.8

Q ss_pred             ccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCC
Q 020448           84 FSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSS  160 (326)
Q Consensus        84 ~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~  160 (326)
                      ..+.++..+++|-|.+ +-+.||++|+++..- -|....+++||+-|+.+|  +.|+=.+..+ ++..  ||+..|.
T Consensus        46 ~~~~pg~~~~~H~H~~-~e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~ip~~--~~H~~~~~~~-~~~~--l~v~~p~  115 (126)
T 4e2g_A           46 VRIEPNTEMPAHEHPH-EQAGVMLEGTLELTI-GEETRVLRPGMAYTIPGG--VRHRARTFED-GCLV--LDIFSPP  115 (126)
T ss_dssp             EEECTTCEEEEECCSS-EEEEEEEEECEEEEE-TTEEEEECTTEEEEECTT--CCEEEECCTT-CEEE--EEEEESC
T ss_pred             EEECCCCcCCCccCCC-ceEEEEEEeEEEEEE-CCEEEEeCCCCEEEECCC--CcEEeEECCC-CEEE--EEEECCC
Confidence            3456666788999998 558899999998764 245678999999999876  7899887654 4554  4543454

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=95.50  E-value=0.084  Score=45.76  Aligned_cols=69  Identities=17%  Similarity=0.129  Sum_probs=51.0

Q ss_pred             cCCCCCC------CCCCCCC--CceEEEEEeeceEEEe--cCCCC--eeeeeCCcEEEEecCCCeEEEeeeCCCCceeEE
Q 020448           85 SVSPPAG------FPDHPHR--GFETVTYMLQGGITHQ--DFSGH--KGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGL  152 (326)
Q Consensus        85 ~~~~~~G------F~~HPHr--G~EtvTyvl~G~l~H~--DS~Gn--~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~l  152 (326)
                      .+.|+..      .+.|-|.  +.+-+.||++|++...  |..|.  .-.+++||+-++.+|  ..|.-.|.+++++..+
T Consensus        73 ~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ip~g--~~H~~~N~g~~~~~~l  150 (190)
T 1x82_A           73 VLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPY--WAHRTVNIGDEPFIFL  150 (190)
T ss_dssp             EECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTT--CEEEEEECSSSCEEEE
T ss_pred             EECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEEECCC--CeEEEEECCcccEEEE
Confidence            5666644      6677776  6788999999987765  33343  268999999998885  7899999877777765


Q ss_pred             EEE
Q 020448          153 QLW  155 (326)
Q Consensus       153 QLW  155 (326)
                      =++
T Consensus       151 ~v~  153 (190)
T 1x82_A          151 AIY  153 (190)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=95.33  E-value=0.07  Score=41.37  Aligned_cols=83  Identities=22%  Similarity=0.253  Sum_probs=57.1

Q ss_pred             CceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeE
Q 020448           59 DGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIV  138 (326)
Q Consensus        59 ~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~  138 (326)
                      +|+..+.++.....       -+-...+.++..+++|.|.+ +-+.||++|.+...- -|..-.+.+||+-|+.+|  +.
T Consensus        27 ~~~~~~~l~~~~~~-------~~~~~~~~~g~~~~~H~H~~-~e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~ip~~--~~   95 (115)
T 1yhf_A           27 DQMLSRTLVQRQDL-------GITVFSLDKGQEIGRHSSPG-DAMVTILSGLAEITI-DQETYRVAEGQTIVMPAG--IP   95 (115)
T ss_dssp             TCEEEEEEEEETTE-------EEEEEEECTTCEEEEECCSS-EEEEEEEESEEEEEE-TTEEEEEETTCEEEECTT--SC
T ss_pred             CCeEEEEEEeCCce-------EEEEEEECCCCccCCEECCC-cEEEEEEeCEEEEEE-CCEEEEECCCCEEEECCC--CC
Confidence            36777777754431       12233455666788999986 566799999998763 245678999999999876  78


Q ss_pred             EEeeeCCCCceeEEEE
Q 020448          139 HSEMPAGEGVQNGLQL  154 (326)
Q Consensus       139 HsE~~~~~~~~~~lQL  154 (326)
                      |+-.+..  .+.++=+
T Consensus        96 H~~~~~~--~~~~~~v  109 (115)
T 1yhf_A           96 HALYAVE--AFQMLLV  109 (115)
T ss_dssp             EEEEESS--CEEEEEE
T ss_pred             EEEEECC--CceEEEE
Confidence            8877754  3444333

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=95.31  E-value=0.18  Score=39.35  Aligned_cols=70  Identities=14%  Similarity=0.171  Sum_probs=48.7

Q ss_pred             cEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCce-eecCccEEEEcCCCeEEEEecCCCCeEEEEE
Q 020448          207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSS-AVSAHNVLVLSLGDGLSAWNRSSKQLRFVLI  278 (326)
Q Consensus       207 ~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~-~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~  278 (326)
                      +.+..+.+.+|.....-. ....-++||++|++.+  ++. .. .+.+||.+.+..+..=.+.+.++++++++.+
T Consensus        27 ~~~~~~~~~pg~~~~~H~-H~~~e~~~Vl~G~~~~~i~~~-~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i   99 (117)
T 2b8m_A           27 VQINHIVLPRGEQMPKHY-SNSYVHLIIIKGEMTLTLEDQ-EPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVV   99 (117)
T ss_dssp             CEEEEEEEETTCBCCCEE-CSSCEEEEEEESEEEEEETTS-CCEEEETTCEEEECTTCEEEEECCSSSEEEEEEE
T ss_pred             eEEEEEEECCCCcCCCEe-CCCcEEEEEEeCEEEEEECCE-EEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEE
Confidence            455667788887542111 1345799999998876  443 36 8999999999988776777654455677776

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=95.10  E-value=0.011  Score=49.39  Aligned_cols=73  Identities=15%  Similarity=0.204  Sum_probs=51.7

Q ss_pred             CCceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCe---eeeeCCcEEEEecC
Q 020448           58 GDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHK---GTIHTGDVQWMTAG  134 (326)
Q Consensus        58 G~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~---~~i~~GdvQwMtAG  134 (326)
                      +.|+..+.+.....   .+.++.  ..++.|++.+|.|-|.+-|. +|||+|++.  |..|..   ..+++||.-+..+|
T Consensus        28 ~~Gv~~~~L~~~~~---~g~~~~--~~~~~pG~~~p~H~H~~~ee-~~VL~G~~~--~~~g~~~~~~~~~~Gd~~~~p~g   99 (145)
T 2o1q_A           28 TGGIRWKLLHVSPE---MGSWTA--IFDCPAGSSFAAHVHVGPGE-YFLTKGKMD--VRGGKAAGGDTAIAPGYGYESAN   99 (145)
T ss_dssp             ESCCEEEEEEEETT---TTEEEE--EEEECTTEEECCEEESSCEE-EEEEEEEEE--ETTCGGGTSEEEESSEEEEECTT
T ss_pred             CCCcEEEEeeECCC---cccEEE--EEEECCCCCCCccCCCCCEE-EEEEEeEEE--EcCCCEecceEeCCCEEEEECcC
Confidence            35676666644332   233333  35677888899999998777 899999998  445554   48999998888765


Q ss_pred             CCeEEE
Q 020448          135 RGIVHS  140 (326)
Q Consensus       135 sGI~Hs  140 (326)
                        ..|.
T Consensus       100 --~~H~  103 (145)
T 2o1q_A          100 --ARHD  103 (145)
T ss_dssp             --CEES
T ss_pred             --CccC
Confidence              6776

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=95.05  E-value=1  Score=43.93  Aligned_cols=112  Identities=12%  Similarity=0.172  Sum_probs=64.1

Q ss_pred             CCCCcccccccccceEEcCCccCCCCceEEEEecCC--CCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceE
Q 020448           34 SDESPCFSRPRMVAKKVHGKLSHDGDGAVVRRAIGR--GDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGI  111 (326)
Q Consensus        34 ~~~~~~~~~~r~i~~~~~~~~~~~G~g~~v~r~~~~--~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l  111 (326)
                      |.-..+....++...++....   | -+++-..+..  +.++.+..+.+. ...+.|+.-++|| |.+-+-|.||++|+.
T Consensus         2 ~~~~p~~f~~~~f~~~~~se~---G-~i~~l~~f~~~s~~l~~l~~~~l~-~~~l~p~gl~~Ph-h~~A~ei~yV~~G~g   75 (418)
T 3s7i_A            2 SRNNPFYFPSRRFSTRYGNQN---G-RIRVLQRFDQRSRQFQNLQNHRIV-QIEAKPNTLVLPK-HADADNILVIQQGQA   75 (418)
T ss_dssp             -CCCTTEECGGGEEEEEECSS---E-EEEEECCHHHHCGGGGGGTTCEEE-EEEECTTEEEEEE-EESEEEEEEEEESEE
T ss_pred             CCCCCcccccccccceEEcCC---c-EEEEecccCCcchhcccccceEEE-EEEecCCceeeee-eCCCCeEEEEEEeeE
Confidence            344444444555555555332   2 3444432321  223333333332 3345666556788 999999999999874


Q ss_pred             --EEecCCC-CeeeeeCCcEEEEecCCCeEEEeeeCC-CCceeEEE
Q 020448          112 --THQDFSG-HKGTIHTGDVQWMTAGRGIVHSEMPAG-EGVQNGLQ  153 (326)
Q Consensus       112 --~H~DS~G-n~~~i~~GdvQwMtAGsGI~HsE~~~~-~~~~~~lQ  153 (326)
                        .--|+-+ ....|++|||-.+.+|  +.|--.|.. +..+..+-
T Consensus        76 ~~g~V~~~~~~~~~l~~GDv~~~P~G--~~h~~~N~g~~~~l~i~~  119 (418)
T 3s7i_A           76 TVTVANGNNRKSFNLDEGHALRIPSG--FISYILNRHDNQNLRVAK  119 (418)
T ss_dssp             EEEEECSSCEEEEEEETTEEEEECTT--CEEEEEECCSSCCEEEEE
T ss_pred             EEEEEecCCEEEEEecCCCEEEECCC--CeEEEEecCCCccEEEEE
Confidence              3334421 2468999999999987  668777754 34555554

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=95.02  E-value=0.054  Score=43.47  Aligned_cols=63  Identities=17%  Similarity=0.146  Sum_probs=45.6

Q ss_pred             CCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEE
Q 020448           87 SPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGL  152 (326)
Q Consensus        87 ~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~l  152 (326)
                      .++..+++|-|.+.+-+-||++|++...-.-|..-.+++||+-|+.+|  +.|.-.+..+ .++.+
T Consensus        51 ~~g~~~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~~l~~Gd~~~ip~g--~~H~~~~~~~-~~~~l  113 (134)
T 2o8q_A           51 GKEAKPTWHTHTVGFQLFYVLRGWVEFEYEDIGAVMLEAGGSAFQPPG--VRHRELRHSD-DLEVL  113 (134)
T ss_dssp             -----CCCEEECCSCEEEEEEESEEEEEETTTEEEEEETTCEEECCTT--CCEEEEEECT-TCEEE
T ss_pred             CCCCCCCCEECCCCcEEEEEEeCEEEEEECCcEEEEecCCCEEEECCC--CcEEeEeCCC-CeEEE
Confidence            345668899999966677999999987654346789999999999985  8898887544 34444

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=94.99  E-value=0.51  Score=47.38  Aligned_cols=97  Identities=10%  Similarity=0.084  Sum_probs=66.2

Q ss_pred             cCCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc--CcCc-----eeecCcc
Q 020448          181 ETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TVNS-----SAVSAHN  253 (326)
Q Consensus       181 ~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g~~~-----~~l~~~d  253 (326)
                      ...+++++.+...    +=|.-....+.+..+.|++|+....-..+...-++||++|++.+.  +.++     ..|.+||
T Consensus       350 ~~~gG~v~~~~~~----~fP~L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GD  425 (510)
T 3c3v_A          350 NPQAGSLKTANEL----NLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGH  425 (510)
T ss_dssp             ETTTEEEEEECTT----TSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTC
T ss_pred             cCCCeEEEEeccc----cCcccccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCc
Confidence            3455667766432    223322336888999999999765444444568999999998873  2111     2499999


Q ss_pred             EEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448          254 VLVLSLGDGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       254 ~~~l~~g~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      ++.+..|..-.+.+ +++++.++.|.-.+
T Consensus       426 v~viP~G~~H~~~N-g~e~l~~l~f~~s~  453 (510)
T 3c3v_A          426 VLVVPQNFAVAGKS-QSDNFEYVAFKTDS  453 (510)
T ss_dssp             EEEECTTCEEEEEE-CSSEEEEEEEESSS
T ss_pred             EEEECCCCeEEEEe-CCCCEEEEEEECCC
Confidence            99999887777777 45678888887444

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=94.97  E-value=0.059  Score=42.57  Aligned_cols=71  Identities=18%  Similarity=0.253  Sum_probs=51.9

Q ss_pred             ccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCCC
Q 020448           84 FSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSS  161 (326)
Q Consensus        84 ~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~~  161 (326)
                      ..+.++...++|-|.+. -+-||++|+++-.- -|..-.+++||+-|+.+|  +.|+-.+..  ...++-+.+ .|.+
T Consensus        41 ~~l~~G~~~~~H~H~~~-e~~~Vl~G~~~~~i-~~~~~~l~~Gd~i~ip~~--~~H~~~~~~--~~~~~~~~v-~p~~  111 (114)
T 3fjs_A           41 MVLPAGKQVGSHSVAGP-STIQCLEGEVEIGV-DGAQRRLHQGDLLYLGAG--AAHDVNAIT--NTSLLVTVV-LVDR  111 (114)
T ss_dssp             EEECTTCEEEEECCSSC-EEEEEEESCEEEEE-TTEEEEECTTEEEEECTT--CCEEEEESS--SEEEEEEEE-CC--
T ss_pred             EEECCCCccCceeCCCc-EEEEEEECEEEEEE-CCEEEEECCCCEEEECCC--CcEEEEeCC--CcEEEEEEE-eCCc
Confidence            34566677889999985 57799999998764 245678999999999997  889888763  345555655 4553

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=94.93  E-value=0.08  Score=43.44  Aligned_cols=71  Identities=13%  Similarity=0.119  Sum_probs=51.4

Q ss_pred             ccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448          206 PTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       206 ~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      .+....+.+++| .+.+  .....-++||++|++++  +| +...+++||.+.+..+....+++.  +.+++|.+...|
T Consensus        56 ~~~~~~~~~~pG-~~~~--h~~~~E~~~VLeG~~~l~~~g-~~~~l~~GD~i~~p~g~~h~~~~~--~~~~~l~v~~p~  128 (133)
T 2pyt_A           56 SMAAGFMQWDNA-FFPW--TLNYDEIDMVLEGELHVRHEG-ETMIAKAGDVMFIPKGSSIEFGTP--TSVRFLYVAWPA  128 (133)
T ss_dssp             SSEEEEEEEEEE-EEEE--ECSSEEEEEEEEEEEEEEETT-EEEEEETTCEEEECTTCEEEEEEE--EEEEEEEEEEST
T ss_pred             cEEEEEEEECCC-Cccc--cCCCCEEEEEEECEEEEEECC-EEEEECCCcEEEECCCCEEEEEeC--CCEEEEEEEcCC
Confidence            456667788888 4433  33457899999999876  44 236799999999998877777653  478888776443

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=94.84  E-value=0.6  Score=38.35  Aligned_cols=90  Identities=14%  Similarity=0.147  Sum_probs=60.6

Q ss_pred             CeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCc-eeecCccEEEEcCC
Q 020448          184 GVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNS-SAVSAHNVLVLSLG  260 (326)
Q Consensus       184 g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~-~~l~~~d~~~l~~g  260 (326)
                      +..++.+++...       ....+.+..+.+++|.....-.. ...-++||++|++.+  ++ +. ..+.+||++.+..+
T Consensus        32 ~~~~~~l~~~~~-------~~~~~~~~~~~~~pg~~~~~H~H-~~~E~~~Vl~G~~~~~~~~-~~~~~l~~Gd~i~ip~~  102 (147)
T 2f4p_A           32 NVWVKMLVTDEN-------GVFNTQVYDVVFEPGARTHWHSH-PGGQILIVTRGKGFYQERG-KPARILKKGDVVEIPPN  102 (147)
T ss_dssp             CEEEEEEECCTT-------CSSSCEEEEEEECTTCEECSEEC-TTCEEEEEEEEEEEEEETT-SCCEEEETTCEEEECTT
T ss_pred             cEEEEEEECCCC-------CCCcEEEEEEEECCCCccCceEC-CCceEEEEEeCEEEEEECC-EEEEEECCCCEEEECCC
Confidence            356676665421       12356778889999987642222 235799999999876  44 23 57999999999977


Q ss_pred             CeEEEEecCCCCeEEEEEeecc
Q 020448          261 DGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       261 ~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      ..=.+.+.+++.++++.+.-.+
T Consensus       103 ~~H~~~n~~~~~~~~l~v~~~~  124 (147)
T 2f4p_A          103 VVHWHGAAPDEELVHIGISTQV  124 (147)
T ss_dssp             CCEEEEEBTTBCEEEEEEECCG
T ss_pred             CcEEeEeCCCCCEEEEEEEccC
Confidence            7666666545567777666544

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=94.59  E-value=0.094  Score=44.53  Aligned_cols=76  Identities=21%  Similarity=0.270  Sum_probs=54.3

Q ss_pred             CCceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCe
Q 020448           58 GDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGI  137 (326)
Q Consensus        58 G~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI  137 (326)
                      +.|+.++.+...+..   +.+.  .-.++.|++-+|.|-|.|-|. +|||+|++.+.+   +...+.+||.-+..+|  .
T Consensus        26 ~~Gv~~~~L~~d~~~---g~~v--~lvr~~pG~~~p~H~H~g~ee-~~VL~G~~~~~e---~~~~~~~Gd~~~~P~g--~   94 (159)
T 3ebr_A           26 SNDVMVKYFKIDPVR---GETI--TLLKAPAGMEMPRHHHTGTVI-VYTVQGSWRYKE---HDWVAHAGSVVYETAS--T   94 (159)
T ss_dssp             CSSSEEEEEEEETTT---TEEE--EEEEECSSCBCCCEEESSCEE-EEEEESCEEETT---SSCCBCTTCEEEECSS--E
T ss_pred             CCCEEEEEeeEcCCC---CeEE--EEEEECCCCCcccccCCCCEE-EEEEEeEEEEeC---CCeEECCCeEEEECCC--C
Confidence            457777776533211   2333  334567888899999999665 699999998643   2248999999888876  6


Q ss_pred             EEEeeeC
Q 020448          138 VHSEMPA  144 (326)
Q Consensus       138 ~HsE~~~  144 (326)
                      .|+-...
T Consensus        95 ~H~~~~~  101 (159)
T 3ebr_A           95 RHTPQSA  101 (159)
T ss_dssp             EECEEES
T ss_pred             cceeEeC
Confidence            8988765

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=94.48  E-value=0.19  Score=39.65  Aligned_cols=77  Identities=13%  Similarity=0.053  Sum_probs=49.6

Q ss_pred             CccEEEEEEECCCCeEE-EecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeec
Q 020448          205 TPTMFLDFTLKPRAQIH-QSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQ  281 (326)
Q Consensus       205 ~~~~~~di~L~~g~~~~-~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~  281 (326)
                      ....+..+.+.+|.... .-........+||++|++.+  +++ ...+.+||++.+..+..-.+.+.++++++++.+.-.
T Consensus        24 ~~~~~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~~~-~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~~~i~~~  102 (125)
T 3cew_A           24 TGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITIDGE-KIELQAGDWLRIAPDGKRQISAASDSPIGFLCIQVK  102 (125)
T ss_dssp             SSCEEEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEETTE-EEEEETTEEEEECTTCCEEEEEBTTBCEEEEEEEEE
T ss_pred             CCcEEEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEECCE-EEEeCCCCEEEECCCCcEEEEcCCCCCEEEEEEEcC
Confidence            34566667888887542 11111222344499998766  442 368999999999988776676654456777766544


Q ss_pred             c
Q 020448          282 P  282 (326)
Q Consensus       282 p  282 (326)
                      |
T Consensus       103 ~  103 (125)
T 3cew_A          103 A  103 (125)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=94.36  E-value=0.076  Score=42.64  Aligned_cols=91  Identities=12%  Similarity=0.151  Sum_probs=57.7

Q ss_pred             CCceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCe
Q 020448           58 GDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGI  137 (326)
Q Consensus        58 G~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI  137 (326)
                      ++++.+.+++.......++-.    .+.+.++..++.|  ...+-+-|||+|+++-.. -|..-.|++||+-++.+|.  
T Consensus        23 ~~~~~~g~v~s~~~~~~~~~~----~~~~~pG~~~~~H--~~~~E~~~Vl~G~~~~~~-~g~~~~l~~GD~v~ip~g~--   93 (119)
T 3lwc_A           23 EADISVGNLVDERHGGPITIG----YGRYAPGQSLTET--MAVDDVMIVLEGRLSVST-DGETVTAGPGEIVYMPKGE--   93 (119)
T ss_dssp             EEEEEEEEC------CCCEEE----EEEECTTCEEEEE--CSSEEEEEEEEEEEEEEE-TTEEEEECTTCEEEECTTC--
T ss_pred             CCCEEEEEeecCCCCCCEEEE----EEEECCCCCcCcc--CCCCEEEEEEeCEEEEEE-CCEEEEECCCCEEEECCCC--
Confidence            345777777753322222222    2345555555555  488889999999999988 3667899999999999986  


Q ss_pred             EEEeeeCCCCceeEEEEEeccCC
Q 020448          138 VHSEMPAGEGVQNGLQLWINLSS  160 (326)
Q Consensus       138 ~HsE~~~~~~~~~~lQLWinLP~  160 (326)
                      .|.-.+. +..++.|  |+..|+
T Consensus        94 ~H~~~~~-~~~~~~l--~v~~P~  113 (119)
T 3lwc_A           94 TVTIRSH-EEGALTA--YVTYPH  113 (119)
T ss_dssp             EEEEEEE-EEEEEEE--EEEECC
T ss_pred             EEEEEcC-CCCeEEE--EEECCC
Confidence            4876554 3444444  665564

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=94.31  E-value=0.24  Score=48.40  Aligned_cols=98  Identities=14%  Similarity=0.252  Sum_probs=66.3

Q ss_pred             eecCCCeEEEEEeCCCCCCcCc-ccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc-----CcCceeecCc
Q 020448          179 RAETDGVEVRIIAGESMGVRSP-VYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG-----TVNSSAVSAH  252 (326)
Q Consensus       179 ~~~~~g~~~rViaG~~~g~~sp-~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~-----g~~~~~l~~~  252 (326)
                      .+..+++.+|++-- + +...+ +.....+.+..+.|++|+....- .....-++||++|++++.     +.....+++|
T Consensus        22 ~~~~e~G~ir~l~~-~-~~~~~~l~~~~~~s~~~~~l~PGg~~~pH-h~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~G   98 (416)
T 1uij_A           22 LFENQNGRIRLLQR-F-NKRSPQLENLRDYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVNNDDRDSYNLHPG   98 (416)
T ss_dssp             EEECSSEEEEEECC-H-HHHCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESCEEEEEECSSCEEEEEECTT
T ss_pred             eEEcCCEEEEEEec-c-CCccccccCcccEEEEEEEeccCcCcccc-cCCCceEEEEEeeEEEEEEEECCCCeEEEecCC
Confidence            45567788998721 1 01112 33444588999999999855433 334568999999999874     2223679999


Q ss_pred             cEEEEcCCCeEEEEec-CCCCeEEEEEe
Q 020448          253 NVLVLSLGDGLSAWNR-SSKQLRFVLIA  279 (326)
Q Consensus       253 d~~~l~~g~~l~i~a~-~~~~a~~LL~~  279 (326)
                      |++.+..|..-.+.+. +++++++|.+-
T Consensus        99 Dv~~iP~G~~H~~~N~gg~e~l~~l~~~  126 (416)
T 1uij_A           99 DAQRIPAGTTYYLVNPHDHQNLKMIWLA  126 (416)
T ss_dssp             EEEEECTTCEEEEEECCSSCCEEEEEEE
T ss_pred             CEEEECCCCeEEEEecCCCCCEEEEEEe
Confidence            9999998877667765 35677776554

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=94.21  E-value=0.3  Score=38.48  Aligned_cols=73  Identities=14%  Similarity=0.210  Sum_probs=50.5

Q ss_pred             CccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          205 TPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       205 ~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      .++.++.+.+++|.....-. -...-++||++|++++  +++ ...+.+||++.+..+..=.+.+.++++++++.+.
T Consensus        32 ~~~~~~~~~~~pg~~~~~H~-H~~~Ei~~v~~G~~~~~i~~~-~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~i~  106 (128)
T 4i4a_A           32 TPFGGAWCIVRPETKSFRHS-HNEYELFIVIQGNAIIRINDE-DFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTIW  106 (128)
T ss_dssp             CSSEEEEEEECTTEECCCBC-CSSEEEEEEEESEEEEEETTE-EEEEETTCEEEECTTCCEEEEECSSSCEEEEEEE
T ss_pred             CCcEEEEEEECCCCccCCEe-cCCeEEEEEEeCEEEEEECCE-EEEECCCcEEEECCCCcEEeEeCCCCCEEEEEEE
Confidence            56777788899987432111 1345799999998776  452 3679999999999877666666544566665543

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=94.14  E-value=0.37  Score=42.61  Aligned_cols=69  Identities=20%  Similarity=0.324  Sum_probs=53.2

Q ss_pred             cEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       207 ~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      +.+..+.+++|+.+..-.. ....++||++|++++  +| +...+.+||.+.+..+..-.+.+.  +++.+|.+.
T Consensus        37 ~~~~~~~~~~G~~~~~h~h-~~~~~~~Vl~G~~~~~i~~-~~~~l~~Gd~~~~p~~~~H~~~a~--~~~~~l~i~  107 (227)
T 3rns_A           37 SYISLFSLAKDEEITAEAM-LGNRYYYCFNGNGEIFIEN-NKKTISNGDFLEITANHNYSIEAR--DNLKLIEIG  107 (227)
T ss_dssp             EEEEEEEECTTCEEEECSC-SSCEEEEEEESEEEEEESS-CEEEEETTEEEEECSSCCEEEEES--SSEEEEEEE
T ss_pred             cEEEEEEECCCCccCcccc-CCCEEEEEEeCEEEEEECC-EEEEECCCCEEEECCCCCEEEEEC--CCcEEEEEE
Confidence            4566678999998764443 457999999999876  55 237899999999998877778775  578888663

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=94.13  E-value=1  Score=45.06  Aligned_cols=123  Identities=11%  Similarity=0.081  Sum_probs=76.8

Q ss_pred             ceecCCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc-----CcC--ceeec
Q 020448          178 KRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG-----TVN--SSAVS  250 (326)
Q Consensus       178 P~~~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~-----g~~--~~~l~  250 (326)
                      |.....+++++.+...    +=|.-....+.+..+.|++|+-...-..+.-.-++||++|++.|.     |+.  ...|.
T Consensus       333 di~~~~gG~v~~v~~~----~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~  408 (496)
T 3ksc_A          333 DIYNPEAGRIKTVTSL----DLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELE  408 (496)
T ss_dssp             SEEETTTEEEEEECTT----TSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEE
T ss_pred             CcccCCCeeEEEeCHH----HCccccccceeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEec
Confidence            3344556778877442    234444446788899999999776555444568999999999874     211  13488


Q ss_pred             CccEEEEcCCCeEEEEecCCCCeEEEEEeeccCCCceeeeC---CcccCcHHHHHHHH
Q 020448          251 AHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQYG---PFVMNSQAEIDQTI  305 (326)
Q Consensus       251 ~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl~epi~~~G---pFVmnt~~ei~~A~  305 (326)
                      +||+.++..|-...+.+. ++++++|.|.-.+....+..-|   -|-.-..+-|..||
T Consensus       409 ~GDV~v~P~G~~H~~~a~-~e~~~~l~f~~s~np~~~~LaG~~sv~~~~p~eVLa~aF  465 (496)
T 3ksc_A          409 AGRALTVPQNYAVAAKSL-SDRFSYVAFKTNDRAGIARLAGTSSVINNLPLDVVAATF  465 (496)
T ss_dssp             TTCEEEECTTCEEEEEEC-SSEEEEEEEESSTTCCEEESSSTTCTTTTSCHHHHHHHH
T ss_pred             CCeEEEECCCCEEEEEeC-CCCEEEEEEECCCCCccccccchhhhhhhCCHHHHHHHH
Confidence            999999987766555565 4678888876444333332222   12223445555554

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=94.06  E-value=0.11  Score=46.46  Aligned_cols=72  Identities=15%  Similarity=0.143  Sum_probs=59.7

Q ss_pred             CCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCCC
Q 020448           86 VSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSS  161 (326)
Q Consensus        86 ~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~~  161 (326)
                      +.|+..+|.|-|.+ |=+.|||+|+++-+=.-|....++|||+-+.-+|  +.|+=.. .++++..+=+|..-|-.
T Consensus       139 l~PG~~yP~HsHp~-EEiy~VLsG~~e~~v~~g~~~~l~pGd~v~ipsg--v~Ha~rt-~dePllalwvW~G~~~~  210 (217)
T 4b29_A          139 WGPGLDYGWHEHLP-EELYSVVSGRALFHLRNAPDLMLEPGQTRFHPAN--APHAMTT-LTDPILTLVLWRGAGLG  210 (217)
T ss_dssp             ECSSCEEEEEECSS-EEEEEEEEECEEEEETTSCCEEECTTCEEEECTT--CCEEEEC-CSSCEEEEEEEESTTTT
T ss_pred             ECCCCcCCCCCCCC-ceEEEEEeCCEEEEECCCCEEecCCCCEEEcCCC--CceeEEE-CCccEEEEEEEeCCCCC
Confidence            46777899999985 7789999999888776778889999999998876  7898874 57889999999865544

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=93.95  E-value=0.083  Score=41.09  Aligned_cols=55  Identities=16%  Similarity=0.080  Sum_probs=42.5

Q ss_pred             CCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeC
Q 020448           86 VSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPA  144 (326)
Q Consensus        86 ~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~  144 (326)
                      +.++..++.|.|.+.| +.||++|+++..-. |..-.|++||+-++.+|  +.|+-.+.
T Consensus        45 ~~~g~~~~~H~h~~~e-~~~vl~G~~~~~i~-~~~~~l~~Gd~i~i~~~--~~H~~~~~   99 (114)
T 2ozj_A           45 FADGESVSEEEYFGDT-LYLILQGEAVITFD-DQKIDLVPEDVLMVPAH--KIHAIAGK   99 (114)
T ss_dssp             EETTSSCCCBCCSSCE-EEEEEEEEEEEEET-TEEEEECTTCEEEECTT--CCBEEEEE
T ss_pred             ECCCCccccEECCCCe-EEEEEeCEEEEEEC-CEEEEecCCCEEEECCC--CcEEEEeC
Confidence            3456678889998766 77999999987542 45678999999999987  57776654

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=93.84  E-value=0.08  Score=40.75  Aligned_cols=59  Identities=17%  Similarity=0.221  Sum_probs=43.7

Q ss_pred             CCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEe
Q 020448           92 FPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWI  156 (326)
Q Consensus        92 F~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWi  156 (326)
                      +++|.|.+.+-+.||++|+++..-.-|..-.+++||+-|+.+|  +.|+-.+.  +.++.  |||
T Consensus        40 ~~~H~H~~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~ip~~--~~H~~~~~--~~~~~--l~i   98 (107)
T 2i45_A           40 YGWHTHGYSDKVLFAVEGDMAVDFADGGSMTIREGEMAVVPKS--VSHRPRSE--NGCSL--VLI   98 (107)
T ss_dssp             CCCBCC--CCEEEEESSSCEEEEETTSCEEEECTTEEEEECTT--CCEEEEEE--EEEEE--EEE
T ss_pred             CcceeCCCCCEEEEEEeCEEEEEECCCcEEEECCCCEEEECCC--CcEeeEeC--CCeEE--EEE
Confidence            6789998866778999999987654347889999999999986  77987773  33444  456

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=93.66  E-value=0.39  Score=45.71  Aligned_cols=77  Identities=9%  Similarity=0.037  Sum_probs=56.2

Q ss_pred             cCccEEEEEEECCCCeEEEecCCCCeEEEEEeecce---EEcCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEee
Q 020448          204 RTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEG---VFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAG  280 (326)
Q Consensus       204 ~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~---~i~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G  280 (326)
                      ...+.+....|++|+....-.. ....++||++|++   .|+|+ ...+++||++.+..+..=.+.+.+++++.+|.+..
T Consensus        97 ~~~l~~~~~~l~PG~~~~~H~H-~~~e~~yVl~G~g~~t~v~g~-~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v~d  174 (354)
T 2d40_A           97 TATLYAGLQLIMPGEVAPSHRH-NQSALRFIVEGKGAFTAVDGE-RTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLD  174 (354)
T ss_dssp             SSSCEEEEEEECTTCEEEEEEE-SSCEEEEEEECSSCEEEETTE-EEECCTTCEEEECTTSCEEEECCSSSCEEEEEEEC
T ss_pred             CCcEEEEEEEECCCCCcCCeec-CcceEEEEEEEEEEEEEECCE-EEEEcCCCEEEECCCCcEEeEeCCCCCEEEEEEEC
Confidence            3456677789999987653322 3458999999996   55763 37899999999987776667766556788887765


Q ss_pred             cc
Q 020448          281 QP  282 (326)
Q Consensus       281 ~p  282 (326)
                      .|
T Consensus       175 ~p  176 (354)
T 2d40_A          175 LP  176 (354)
T ss_dssp             HH
T ss_pred             ch
Confidence            54

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=93.65  E-value=0.66  Score=45.69  Aligned_cols=98  Identities=12%  Similarity=0.201  Sum_probs=66.6

Q ss_pred             eecCCCeEEEEEeCCCCCCcCc-ccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc----C-cCceeecCc
Q 020448          179 RAETDGVEVRIIAGESMGVRSP-VYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG----T-VNSSAVSAH  252 (326)
Q Consensus       179 ~~~~~g~~~rViaG~~~g~~sp-~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~----g-~~~~~l~~~  252 (326)
                      .+..+++.++++..-  ..+++ +.....+.+..+.|++|+....- ..+..-++||++|+++++    + .....+++|
T Consensus        59 ~i~~e~G~i~~l~~~--~~~~~~l~~~g~~s~~~~~l~Pgg~~~pH-h~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~G  135 (445)
T 2cav_A           59 LFKNQHGSLRLLQRF--NEDTEKLENLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQG  135 (445)
T ss_dssp             EEEETTEEEEEECCT--TSSCSTTGGGTTEEEEEEEECSSEEEEEE-EESSEEEEEEEESEEEEEEEETTEEEEEEEETT
T ss_pred             eEEcCCEEEEEEecc--CcccccccccCcEEEEEEEECCCcCccCc-CCCCceEEEEEeCEEEEEEEeCCCCEEEEecCC
Confidence            445567889987541  11222 23334578888999999876544 445678999999998875    2 123679999


Q ss_pred             cEEEEcCCCeEEEEecC-CCCeEEEEEe
Q 020448          253 NVLVLSLGDGLSAWNRS-SKQLRFVLIA  279 (326)
Q Consensus       253 d~~~l~~g~~l~i~a~~-~~~a~~LL~~  279 (326)
                      |.+.+..|..-.+.+.+ ++++++|.+.
T Consensus       136 Dv~~~P~G~~H~~~N~g~~~~l~~l~v~  163 (445)
T 2cav_A          136 DAIKIQAGTPFYLINPDNNQNLRILKFA  163 (445)
T ss_dssp             EEEEECTTCCEEEEECCSSCCEEEEEEE
T ss_pred             CEEEECCCCcEEEEECCCCCCEEEEEEe
Confidence            99999987766666654 4567666544

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=93.55  E-value=0.78  Score=43.52  Aligned_cols=92  Identities=15%  Similarity=0.121  Sum_probs=59.9

Q ss_pred             CCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc-----CcC-ceeecCccEE
Q 020448          182 TDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG-----TVN-SSAVSAHNVL  255 (326)
Q Consensus       182 ~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~-----g~~-~~~l~~~d~~  255 (326)
                      ..++.+|.+....      +.....+....+.+.+|+....-... ..-++||++|++++.     |+. ...+++||.+
T Consensus        60 ~~~G~~~~~~~~~------lp~~~~~~~~~~~l~pg~~~~~H~H~-~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~  132 (385)
T 1j58_A           60 EKGGYAREVTVRE------LPISENLASVNMRLKPGAIRELHWHK-EAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLW  132 (385)
T ss_dssp             ETTEEEEEECTTT------CTTCSSCEEEEEEECTTCEEEEEEES-SCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEE
T ss_pred             cCCcEEEEecccc------CcccCceEEEEEEECCCCCCCCccCC-hheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEE
Confidence            3556777765432      12223677888899999866533333 468999999998762     310 1379999999


Q ss_pred             EEcCCCeEEEEecCCCCeEEEEEeec
Q 020448          256 VLSLGDGLSAWNRSSKQLRFVLIAGQ  281 (326)
Q Consensus       256 ~l~~g~~l~i~a~~~~~a~~LL~~G~  281 (326)
                      .+..+..-.+.+.+ ++++++++-..
T Consensus       133 ~ip~g~~H~~~n~~-~~~~~~~v~~~  157 (385)
T 1j58_A          133 YFPSGLPHSIQALE-EGAEFLLVFDD  157 (385)
T ss_dssp             EECTTCCEEEEEEE-EEEEEEEEESC
T ss_pred             EECCCCeEEEEECC-CCEEEEEEECC
Confidence            99977666666543 35777764433

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=93.52  E-value=0.18  Score=38.98  Aligned_cols=74  Identities=14%  Similarity=0.119  Sum_probs=54.1

Q ss_pred             ccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCcC----ceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          206 PTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVN----SSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       206 ~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~----~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      .+.+..+.++||++..+-....+..+.||++|.+.+...+    ...+.+||.+.+..|..=.+++.++.++.||-+-
T Consensus        16 ~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~~~~l~~G~~~~ip~G~~H~~~N~g~~pl~~IeVE   93 (98)
T 3lag_A           16 EVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRSLAQLKTGRSYARKAGVQHDVRNESTAEIVFLEIE   93 (98)
T ss_dssp             SEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEECCCBCTTCCEEECTTCEEEEBCCSSSCEEEEEEE
T ss_pred             eEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceEEEEecCCcEEEEcCCCcEECEECCCCeEEEEEEE
Confidence            4677788999999887666666677888889998873211    1357899999998887767777666777777653

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=93.49  E-value=1.1  Score=44.38  Aligned_cols=120  Identities=14%  Similarity=0.105  Sum_probs=74.3

Q ss_pred             cCCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc-----CcC--ceeecCcc
Q 020448          181 ETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG-----TVN--SSAVSAHN  253 (326)
Q Consensus       181 ~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~-----g~~--~~~l~~~d  253 (326)
                      ...+++++.+...    +=|.-....+.+..+.|++|+-...-..+.-.-++||++|++.|.     |+.  ...|.+||
T Consensus       301 ~~~gG~v~~v~~~----~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GD  376 (466)
T 3kgl_A          301 KPQLGYISTLNSY----DLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQ  376 (466)
T ss_dssp             ETTTEEEEEECTT----TCTTHHHHTCEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTC
T ss_pred             cCCCceEEEechh----hCcccccCceeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecCCc
Confidence            3445666665432    224333447889999999998766544444468999999999874     211  13488999


Q ss_pred             EEEEcCCCeEEEEecCCCCeEEEEEeeccCCCceeeeC--C-cccCcHHHHHHHH
Q 020448          254 VLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQYG--P-FVMNSQAEIDQTI  305 (326)
Q Consensus       254 ~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl~epi~~~G--p-FVmnt~~ei~~A~  305 (326)
                      +.++..|-...+.+. ++++++|.+...+..+.+..-|  - |-....+-|..||
T Consensus       377 V~v~P~G~~H~~~ag-~e~~~~l~~f~s~np~~~~LaG~~s~~~~lP~eVla~aF  430 (466)
T 3kgl_A          377 LLSIPQGFSVVKRAT-SEQFRWIEFKTNANAQINTLAGRTSVLRGLPLEVISNGY  430 (466)
T ss_dssp             EEEECTTCEEEEEEC-SSEEEEEEEESSSSCCEEESSSTTCTGGGSCHHHHHHHH
T ss_pred             EEEECCCCeEEEEcC-CCCEEEEEEECCCCCccccccchhhhhhhCCHHHHHHHh
Confidence            999987765555554 4678888886655433332222  1 2223445555555

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=93.46  E-value=0.79  Score=38.91  Aligned_cols=99  Identities=12%  Similarity=0.107  Sum_probs=61.5

Q ss_pred             cccCCCccceecC-CCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEee--cceEE--cCc
Q 020448          170 QEIPSEEIKRAET-DGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIE--GEGVF--GTV  244 (326)
Q Consensus       170 ~~~~~~~iP~~~~-~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~--G~~~i--~g~  244 (326)
                      +.+..+++|.... .|...|++++..         ..+..+..+.+..+....  ......=++||++  |++++  +|+
T Consensus        18 ~iv~~~ei~~~~~~~G~srR~l~~~~---------~fp~sv~~v~~g~~~~~H--~H~~~~E~~yVLe~~G~g~v~idge   86 (157)
T 4h7l_A           18 QMISLSEIEAVACPCGWAQRAFGHDA---------GTSVSVHYTQITKAARTH--YHREHQEIYVVLDHAAHATIELNGQ   86 (157)
T ss_dssp             EEEETTTSCCEEETTEEEEEESCGGG---------CCSCEEEEEEECSCCCCB--BCSSCEEEEEEEEECTTCEEEETTE
T ss_pred             eEEEhhhCCCccCCCCeeeEEeEcCC---------CCcEEEEEEeCCCCccce--ECCCCcEEEEEEecCcEEEEEECCE
Confidence            3344456776653 445556565531         123455555665544322  2223346899999  76655  562


Q ss_pred             CceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeeccCC
Q 020448          245 NSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLN  284 (326)
Q Consensus       245 ~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl~  284 (326)
                       ...+++||.+.+..+..=.+.+    ++++|.+...|+.
T Consensus        87 -~~~l~~GD~v~IPpg~~H~i~g----~l~~L~I~~Pp~~  121 (157)
T 4h7l_A           87 -SYPLTKLLAISIPPLVRHRIVG----EATIINIVSPPFD  121 (157)
T ss_dssp             -EEECCTTEEEEECTTCCEEEES----CEEEEEEEESSCC
T ss_pred             -EEEeCCCCEEEECCCCeEeeEC----CEEEEEEECCCCC
Confidence             3689999999999776544542    6999999888864

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=93.41  E-value=0.36  Score=40.72  Aligned_cols=66  Identities=12%  Similarity=0.243  Sum_probs=49.2

Q ss_pred             EEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeeccC
Q 020448          212 FTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPL  283 (326)
Q Consensus       212 i~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl  283 (326)
                      +.++ ++++.+..  ...-+.||++|++++  +| +...+.+||.+.+..|...++++.  +.+++|.+.-.+.
T Consensus        71 ~~~e-~~~~~~~~--~~eE~~yVLeG~~~l~i~g-~~~~l~~GD~i~iP~G~~h~~~n~--~~a~~l~V~~P~~  138 (151)
T 4axo_A           71 MEMK-ETTFDWTL--NYDEIDYVIDGTLDIIIDG-RKVSASSGELIFIPKGSKIQFSVP--DYARFIYVTYPAD  138 (151)
T ss_dssp             EEEE-EEEEEEEC--SSEEEEEEEEEEEEEEETT-EEEEEETTCEEEECTTCEEEEEEE--EEEEEEEEEECSC
T ss_pred             EEEc-CccccEeC--CCcEEEEEEEeEEEEEECC-EEEEEcCCCEEEECCCCEEEEEeC--CCEEEEEEECCCC
Confidence            3444 56655543  466899999999877  34 236799999999999988888874  5799888876553

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=93.17  E-value=0.19  Score=37.61  Aligned_cols=50  Identities=20%  Similarity=0.337  Sum_probs=40.0

Q ss_pred             CCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeC
Q 020448           92 FPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPA  144 (326)
Q Consensus        92 F~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~  144 (326)
                      +++|-|.+..-+.||++|.+...- -|..-.+.+||+-|+.+|  ..|+-.+.
T Consensus        42 ~~~H~H~~~~e~~~v~~G~~~~~~-~~~~~~l~~Gd~~~ip~~--~~H~~~~~   91 (102)
T 3d82_A           42 FVWHEHADTDEVFIVMEGTLQIAF-RDQNITLQAGEMYVIPKG--VEHKPMAK   91 (102)
T ss_dssp             CCCBCCTTCCEEEEEEESEEEEEC-SSCEEEEETTEEEEECTT--CCBEEEEE
T ss_pred             CCceeCCCCcEEEEEEeCEEEEEE-CCEEEEEcCCCEEEECCC--CeEeeEcC
Confidence            688999984557899999998764 356789999999999886  67876654

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=93.13  E-value=0.23  Score=38.46  Aligned_cols=68  Identities=10%  Similarity=0.184  Sum_probs=45.1

Q ss_pred             EEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          208 MFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       208 ~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      .+..+.+++|.....- .....-++||++|++.+  ++ +...+.+||.+.+..+..=.+.+.  ++++++++-
T Consensus        39 ~~~~~~~~~g~~~~~H-~h~~~e~~~vl~G~~~~~i~~-~~~~l~~Gd~i~i~~~~~H~~~~~--~~~~~~~i~  108 (114)
T 2ozj_A           39 QISLFSFADGESVSEE-EYFGDTLYLILQGEAVITFDD-QKIDLVPEDVLMVPAHKIHAIAGK--GRFKMLQIT  108 (114)
T ss_dssp             EEEEEEEETTSSCCCB-CCSSCEEEEEEEEEEEEEETT-EEEEECTTCEEEECTTCCBEEEEE--EEEEEEEEE
T ss_pred             eEEEEEECCCCccccE-ECCCCeEEEEEeCEEEEEECC-EEEEecCCCEEEECCCCcEEEEeC--CCcEEEEEE
Confidence            3444556777754311 12345799999999876  44 236899999999997765556653  367777654

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=93.09  E-value=1  Score=43.77  Aligned_cols=98  Identities=10%  Similarity=0.104  Sum_probs=64.2

Q ss_pred             ceecCCCeEEEEEeCCCCCCcCcc-cccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc-----CcCceeecC
Q 020448          178 KRAETDGVEVRIIAGESMGVRSPV-YTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG-----TVNSSAVSA  251 (326)
Q Consensus       178 P~~~~~g~~~rViaG~~~g~~sp~-~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~-----g~~~~~l~~  251 (326)
                      +.++.+++.+|++- .+ +.++|. .....+.+..+.|++|+-.. +-.....-++||++|++.++     +.....|.+
T Consensus        24 ~~~~~e~G~i~~l~-~~-~~~~~~l~~~~~~s~~~~~l~pgg~~~-ph~~~a~ei~yVl~G~~~v~~v~~~~~~~~~l~~  100 (397)
T 2phl_A           24 TLFKNQYGHIRVLQ-RF-DQQSKRLQNLEDYRLVEFRSKPETLLL-PQQADAELLLVVRSGSAILVLVKPDDRREYFFLT  100 (397)
T ss_dssp             EEEEETTEEEEEEC-CH-HHHCGGGGGGTTCEEEEEEECSSEEEE-EEEESEEEEEEEEESEEEEEEEETTTEEEEEEEE
T ss_pred             ceEEcCCEEEEEec-cc-CCCChhhcccccEEEEEEEECCCcCcc-CEecCCCeEEEEEeeeEEEEEEeCCCcEEEEECC
Confidence            44567778999971 11 112332 34445888899999987542 22224458999999999885     222367999


Q ss_pred             ccE------EEEcCCCeEEEEecC-CCCeEEEEE
Q 020448          252 HNV------LVLSLGDGLSAWNRS-SKQLRFVLI  278 (326)
Q Consensus       252 ~d~------~~l~~g~~l~i~a~~-~~~a~~LL~  278 (326)
                      ||+      +.+..|..--+.+.+ ++++++|.+
T Consensus       101 GDv~~~~~~~~iP~G~~h~~~N~g~~~~l~~i~~  134 (397)
T 2phl_A          101 SDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQL  134 (397)
T ss_dssp             SSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEE
T ss_pred             CCcccccceEEECCCCcEEEEeCCCCCCeEEEEe
Confidence            999      999877766665543 346666644

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=92.96  E-value=0.63  Score=38.40  Aligned_cols=88  Identities=8%  Similarity=-0.055  Sum_probs=53.6

Q ss_pred             CCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCcCc---eeecCccEEEEcC
Q 020448          183 DGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNS---SAVSAHNVLVLSL  259 (326)
Q Consensus       183 ~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~~---~~l~~~d~~~l~~  259 (326)
                      .|...+++.....  .       .-.+..+++++|+.+-.-... ....+|||+|++.....+.   ..+++||.+.+..
T Consensus        29 ~Gv~~~~L~~~~~--~-------g~~~~~~~~~pG~~~p~H~H~-~~ee~~VL~G~~~~~~g~~~~~~~~~~Gd~~~~p~   98 (145)
T 2o1q_A           29 GGIRWKLLHVSPE--M-------GSWTAIFDCPAGSSFAAHVHV-GPGEYFLTKGKMDVRGGKAAGGDTAIAPGYGYESA   98 (145)
T ss_dssp             SCCEEEEEEEETT--T-------TEEEEEEEECTTEEECCEEES-SCEEEEEEEEEEEETTCGGGTSEEEESSEEEEECT
T ss_pred             CCcEEEEeeECCC--c-------ccEEEEEEECCCCCCCccCCC-CCEEEEEEEeEEEEcCCCEecceEeCCCEEEEECc
Confidence            5677777754310  0       113555789999976432222 2456899999999864221   3678999999987


Q ss_pred             CCeEE-EEecCCCCeEEEEEeecc
Q 020448          260 GDGLS-AWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       260 g~~l~-i~a~~~~~a~~LL~~G~p  282 (326)
                      +..-. ..+.  +++.++++...|
T Consensus        99 g~~H~p~~~~--e~~~~l~~~~gp  120 (145)
T 2o1q_A           99 NARHDKTEFP--VASEFYMSFLGP  120 (145)
T ss_dssp             TCEESCCEEE--EEEEEEEEEESC
T ss_pred             CCccCCeECC--CCeEEEEEECCc
Confidence            76544 2322  356665554434

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=92.75  E-value=0.83  Score=39.34  Aligned_cols=77  Identities=13%  Similarity=0.064  Sum_probs=52.6

Q ss_pred             ccEEEEEEECCCCeEE----Ee--cCC--CCeEEEEEeecceEE--cCcC----ceeecCccEEEEcCCCeEEEEecCCC
Q 020448          206 PTMFLDFTLKPRAQIH----QS--IPE--TWNAFVYTIEGEGVF--GTVN----SSAVSAHNVLVLSLGDGLSAWNRSSK  271 (326)
Q Consensus       206 ~~~~~di~L~~g~~~~----~~--~p~--~~~~~lyVl~G~~~i--~g~~----~~~l~~~d~~~l~~g~~l~i~a~~~~  271 (326)
                      .+.+..+.+.+|+...    .+  ...  +..-++||++|++.+  ++..    ...+.+||.+.+..+..=.+.+.+++
T Consensus        66 ~l~~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ip~g~~H~~~N~g~~  145 (190)
T 1x82_A           66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGDE  145 (190)
T ss_dssp             CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECSSS
T ss_pred             CeEEEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEEECCCCeEEEEECCcc
Confidence            4666677899997621    11  111  235899999999876  4422    15799999999998776666665556


Q ss_pred             CeEEEEEeecc
Q 020448          272 QLRFVLIAGQP  282 (326)
Q Consensus       272 ~a~~LL~~G~p  282 (326)
                      +++++.+...+
T Consensus       146 ~~~~l~v~~~~  156 (190)
T 1x82_A          146 PFIFLAIYPAD  156 (190)
T ss_dssp             CEEEEEEEETT
T ss_pred             cEEEEEEECCC
Confidence            78887776554

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=92.71  E-value=0.98  Score=41.66  Aligned_cols=71  Identities=8%  Similarity=0.033  Sum_probs=53.3

Q ss_pred             EEEEEECCCCeEEEecCCCCeEEEEEeecceEEc--CcCceeecCc---------cEEEEcCCCeEEEEecCCCCeEEEE
Q 020448          209 FLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TVNSSAVSAH---------NVLVLSLGDGLSAWNRSSKQLRFVL  277 (326)
Q Consensus       209 ~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g~~~~~l~~~---------d~~~l~~g~~l~i~a~~~~~a~~LL  277 (326)
                      +--++|++|+++++.+. ++...+..+.|.++|.  |..-..+..+         +++.+..|..++|+|.  ++++|.+
T Consensus        31 f~~~~L~~Ge~~~~~~~-~~E~~iv~l~G~~~V~~~g~~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~--~~~~~~v  107 (270)
T 2qjv_A           31 FDVWQLXAGESITLPSD-ERERCLVLVAGLASVXAADSFFYRIGQRMSPFERIPAYSVYLPHHTEAXVTAE--TDLELAV  107 (270)
T ss_dssp             EEEEEECTTCEEEECCS-SEEEEEEEEESCEEEEETTEEEEEECCCSSGGGCSCCCEEEECSSCCEEEEES--SSEEEEE
T ss_pred             EEEEEecCCCEEEecCC-CcEEEEEEecceEEEEECCEEEeccccccccccCCCCcEEEECCCCEEEEEec--CCceEEE
Confidence            44458999999998875 5689999999988774  4110112433         8999998889999996  4799999


Q ss_pred             Eeecc
Q 020448          278 IAGQP  282 (326)
Q Consensus       278 ~~G~p  282 (326)
                      .+..-
T Consensus       108 ~sAp~  112 (270)
T 2qjv_A          108 CSAPG  112 (270)
T ss_dssp             EEEEC
T ss_pred             Eeeec
Confidence            88764

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=92.51  E-value=0.17  Score=50.83  Aligned_cols=73  Identities=14%  Similarity=0.134  Sum_probs=55.7

Q ss_pred             eecccCCCCCCCCCCCCCCceEEEEEeeceEEE--ecCCCCe---eeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEE
Q 020448           81 LDEFSVSPPAGFPDHPHRGFETVTYMLQGGITH--QDFSGHK---GTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLW  155 (326)
Q Consensus        81 lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H--~DS~Gn~---~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLW  155 (326)
                      +....+.|++.+++|-|.+-.-+.||++|...-  -|+.|+.   ..|++|||-++-+|  ..|.-.| .+..+.++=++
T Consensus       374 ~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~viP~G--~~H~~~N-g~e~l~~l~f~  450 (510)
T 3c3v_A          374 AEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLVVPQN--FAVAGKS-QSDNFEYVAFK  450 (510)
T ss_dssp             EEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTT--CEEEEEE-CSSEEEEEEEE
T ss_pred             EEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEEECCC--CeEEEEe-CCCCEEEEEEE
Confidence            334445677778999999887888999998665  4777775   35999999999976  7899888 56667776666


Q ss_pred             e
Q 020448          156 I  156 (326)
Q Consensus       156 i  156 (326)
                      .
T Consensus       451 ~  451 (510)
T 3c3v_A          451 T  451 (510)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=92.30  E-value=0.19  Score=50.01  Aligned_cols=72  Identities=17%  Similarity=0.187  Sum_probs=55.9

Q ss_pred             ecccCCCCCCCCCCCCCCceEEEEEeeceEEE--ecCCCCe---eeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEe
Q 020448           82 DEFSVSPPAGFPDHPHRGFETVTYMLQGGITH--QDFSGHK---GTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWI  156 (326)
Q Consensus        82 D~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H--~DS~Gn~---~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWi  156 (326)
                      ....+.|++.+++|-|.+-+-+.||++|+..-  -|.-|+.   ..|++|||-++-+|  ..|.-.| .+..+.++=++.
T Consensus       341 ~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~viP~G--~~H~~~n-g~~~l~~l~f~~  417 (476)
T 1fxz_A          341 EFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQN--FVVAARS-QSDNFEYVSFKT  417 (476)
T ss_dssp             EEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTT--CEEEEEE-CSTTEEEEEEES
T ss_pred             EEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEEECCC--CeEEEEe-CCCCEEEEEEEC
Confidence            34445777778999999888888999998665  4677775   35999999999976  7899888 566677776665

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=92.14  E-value=0.25  Score=42.15  Aligned_cols=76  Identities=17%  Similarity=0.150  Sum_probs=51.5

Q ss_pred             ceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEE
Q 020448           60 GAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVH  139 (326)
Q Consensus        60 g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~H  139 (326)
                      |+.++.+.....   -+.++.  -..+.++..||.|-|.| +..+|||+|.+...+  +....+++|+.-+..+|  ..|
T Consensus        29 GV~~~~L~~~~~---~g~~v~--lvr~~pG~~~p~H~H~g-~ee~~VL~G~f~~~~--~~~~~~~aGd~~~~P~g--~~H   98 (165)
T 3cjx_A           29 GTDIFPLFMDPY---NGLMVM--RASFAPGLTLPLHFHTG-TVHMYTISGCWYYTE--YPGQKQTAGCYLYEPGG--SIH   98 (165)
T ss_dssp             TEEEEEEEEETT---TTEEEE--EEEECTTCBCCEEEESS-CEEEEEEESEEEETT--CTTSCEETTEEEEECTT--CEE
T ss_pred             CEEEEEeEeCCC---CCcEEE--EEEECCCCcCCcccCCC-CEEEEEEEEEEEECC--CceEEECCCeEEEeCCC--Cce
Confidence            676666643322   133333  34567788899999987 456789999998742  11467899998888876  468


Q ss_pred             EeeeCC
Q 020448          140 SEMPAG  145 (326)
Q Consensus       140 sE~~~~  145 (326)
                      +-....
T Consensus        99 ~~~a~~  104 (165)
T 3cjx_A           99 QFNTPR  104 (165)
T ss_dssp             CEECCT
T ss_pred             eeEeCC
Confidence            877543

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=91.97  E-value=0.12  Score=44.07  Aligned_cols=64  Identities=11%  Similarity=0.005  Sum_probs=47.8

Q ss_pred             CCCCCCCCCCCceEEEEEee--ceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCCC
Q 020448           89 PAGFPDHPHRGFETVTYMLQ--GGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSS  161 (326)
Q Consensus        89 ~~GF~~HPHrG~EtvTyvl~--G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~~  161 (326)
                      +.+.+.|-|...+=+.|||+  |+.+-.-. |..-.|++||+-+..+|  +.|.-..    .+++|-+-  .|+-
T Consensus        55 g~~~~~H~H~~~~E~~yVLe~~G~g~v~id-ge~~~l~~GD~v~IPpg--~~H~i~g----~l~~L~I~--~Pp~  120 (157)
T 4h7l_A           55 TKAARTHYHREHQEIYVVLDHAAHATIELN-GQSYPLTKLLAISIPPL--VRHRIVG----EATIINIV--SPPF  120 (157)
T ss_dssp             CSCCCCBBCSSCEEEEEEEEECTTCEEEET-TEEEECCTTEEEEECTT--CCEEEES----CEEEEEEE--ESSC
T ss_pred             CCCccceECCCCcEEEEEEecCcEEEEEEC-CEEEEeCCCCEEEECCC--CeEeeEC----CEEEEEEE--CCCC
Confidence            34678999998888999999  88777653 45678999999999987  6787652    46665444  4653

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=91.54  E-value=0.63  Score=36.98  Aligned_cols=73  Identities=12%  Similarity=0.070  Sum_probs=42.6

Q ss_pred             EEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448          209 FLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       209 ~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      ++.+.+.+|.....-......-++||++|++.+  ++.+...+.+||.+.+..+..=.+.+.++ ++++|.+-..+
T Consensus        45 ~~~~~~~~g~~~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~~l~~Gd~~~ip~g~~H~~~~~~~-~~~~l~~~~p~  119 (134)
T 2o8q_A           45 VIRAIPGKEAKPTWHTHTVGFQLFYVLRGWVEFEYEDIGAVMLEAGGSAFQPPGVRHRELRHSD-DLEVLEIVSPA  119 (134)
T ss_dssp             EEEECC-----CCCEEECCSCEEEEEEESEEEEEETTTEEEEEETTCEEECCTTCCEEEEEECT-TCEEEEEESST
T ss_pred             EEEEecCCCCCCCCEECCCCcEEEEEEeCEEEEEECCcEEEEecCCCEEEECCCCcEEeEeCCC-CeEEEEEECCC
Confidence            444444455533211222335799999999877  33123789999999998776656666433 57887554443

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=91.51  E-value=1.4  Score=37.11  Aligned_cols=85  Identities=11%  Similarity=0.065  Sum_probs=55.4

Q ss_pred             CCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCcCceeecCccEEEEcCCCe
Q 020448          183 DGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDG  262 (326)
Q Consensus       183 ~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~~~~l~~~d~~~l~~g~~  262 (326)
                      .|...+++....         .....+.-+++++|+.+..-... ....+|||+|+..+++. +..+.+||.+....+..
T Consensus        27 ~Gv~~~~L~~d~---------~~g~~v~lvr~~pG~~~p~H~H~-g~ee~~VL~G~~~~~e~-~~~~~~Gd~~~~P~g~~   95 (159)
T 3ebr_A           27 NDVMVKYFKIDP---------VRGETITLLKAPAGMEMPRHHHT-GTVIVYTVQGSWRYKEH-DWVAHAGSVVYETASTR   95 (159)
T ss_dssp             SSSEEEEEEEET---------TTTEEEEEEEECSSCBCCCEEES-SCEEEEEEESCEEETTS-SCCBCTTCEEEECSSEE
T ss_pred             CCEEEEEeeEcC---------CCCeEEEEEEECCCCCcccccCC-CCEEEEEEEeEEEEeCC-CeEECCCeEEEECCCCc
Confidence            456677765321         01234556788999875322221 25788999999997542 25899999999988776


Q ss_pred             EEEEec--CCCCeEEEEE
Q 020448          263 LSAWNR--SSKQLRFVLI  278 (326)
Q Consensus       263 l~i~a~--~~~~a~~LL~  278 (326)
                      -+..+.  +++++.+++.
T Consensus        96 H~~~~~~~~~e~~~~~~~  113 (159)
T 3ebr_A           96 HTPQSAYAEGPDIITFNI  113 (159)
T ss_dssp             ECEEESSSSSSCEEEEEE
T ss_pred             ceeEeCCCCCCCEEEEEE
Confidence            666664  3457776663

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=91.42  E-value=0.22  Score=42.65  Aligned_cols=72  Identities=14%  Similarity=0.153  Sum_probs=52.4

Q ss_pred             ccCCCCCCCCCCCCCCceEEEEEeeceEEE--ecCC-CCeeeeeCCcEEEEecCCCeEEEeeeCCCC-ceeEEEEEeccC
Q 020448           84 FSVSPPAGFPDHPHRGFETVTYMLQGGITH--QDFS-GHKGTIHTGDVQWMTAGRGIVHSEMPAGEG-VQNGLQLWINLS  159 (326)
Q Consensus        84 ~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H--~DS~-Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~-~~~~lQLWinLP  159 (326)
                      ..+.|++..++| |.+-+-+-||++|+++-  -|+- +..-.|++||+-...+|  +.|.-.|..++ .+..  +|+..|
T Consensus        46 ~~l~pg~~~~pH-h~~a~E~~yVl~G~~~v~v~~~~~~~~~~l~~GDv~~~P~g--~~H~~~N~g~~~~l~~--l~v~~~  120 (178)
T 1dgw_A           46 YCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAG--TPFYLINPDNNQNLRI--LKFAIT  120 (178)
T ss_dssp             EEECTTEEEEEE-EESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTT--CCEEEEECCSSSCEEE--EEEEEC
T ss_pred             EEecCCcEecCc-CCCCCEEEEEEeEEEEEEEEeCCCcEEEEECCCCEEEECCC--CeEEEEeCCCCCCEEE--EEEECC
Confidence            346677667899 99888899999998654  2333 23467999999999985  78999987654 5655  455445


Q ss_pred             C
Q 020448          160 S  160 (326)
Q Consensus       160 ~  160 (326)
                      .
T Consensus       121 ~  121 (178)
T 1dgw_A          121 F  121 (178)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=91.15  E-value=1.3  Score=44.51  Aligned_cols=98  Identities=8%  Similarity=0.079  Sum_probs=64.8

Q ss_pred             ceecCCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc--CcC-----ceeec
Q 020448          178 KRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TVN-----SSAVS  250 (326)
Q Consensus       178 P~~~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g~~-----~~~l~  250 (326)
                      |.....+++++.+.-.    +=|.-....+.+..+.|++|+-...-..+.-.-++||++|++.|.  +.+     ...|.
T Consensus       369 d~~n~~GG~v~~a~~~----~fP~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~  444 (531)
T 3fz3_A          369 DIFSPRAGRISTLNSH----NLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQ  444 (531)
T ss_dssp             SEEETTTEEEEEESTT----TCTHHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred             CcccCCCeEEEEeccc----cCCccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEec
Confidence            3344456777776432    234333347888999999999876544444457999999999863  211     14689


Q ss_pred             CccEEEEcCCCeEEEEecCCCCeEEEEEee
Q 020448          251 AHNVLVLSLGDGLSAWNRSSKQLRFVLIAG  280 (326)
Q Consensus       251 ~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G  280 (326)
                      +||+++|..|-.....+. +++++|+.|..
T Consensus       445 ~GDV~v~P~G~~H~~~ag-~e~l~flaF~s  473 (531)
T 3fz3_A          445 QGQLFIVPQNHGVIQQAG-NQGFEYFAFKT  473 (531)
T ss_dssp             TTCEEEECTTCEEEEEEE-EEEEEEEEEES
T ss_pred             CCeEEEECCCCeEEEecC-CCCEEEEEEec
Confidence            999999987754433343 35788887754

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=91.07  E-value=0.23  Score=38.73  Aligned_cols=49  Identities=22%  Similarity=0.219  Sum_probs=38.4

Q ss_pred             CCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeC
Q 020448           92 FPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPA  144 (326)
Q Consensus        92 F~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~  144 (326)
                      ++.| |.+.| +.||++|+++-...-|....+++||+-.+.+|  ..|.-.+.
T Consensus        43 ~~~h-H~~~E-~~~Vl~G~~~~~i~~g~~~~l~~GD~i~ip~g--~~H~~~n~   91 (101)
T 1o5u_A           43 FDWY-YDTNE-TCYILEGKVEVTTEDGKKYVIEKGDLVTFPKG--LRCRWKVL   91 (101)
T ss_dssp             EEEE-CSSCE-EEEEEEEEEEEEETTCCEEEEETTCEEEECTT--CEEEEEEE
T ss_pred             cccc-CCceE-EEEEEeCEEEEEECCCCEEEECCCCEEEECCC--CcEEEEeC
Confidence            5556 66655 67999999998875577889999999999975  67776654

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=90.68  E-value=0.57  Score=35.76  Aligned_cols=55  Identities=15%  Similarity=0.196  Sum_probs=38.2

Q ss_pred             eEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeeccCCC
Q 020448          229 NAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNE  285 (326)
Q Consensus       229 ~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl~e  285 (326)
                      .-++||++|++++  ++.+...+.+||.+.+..+..=.+.+.  +++++|++.-....|
T Consensus        49 ~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~--~~~~~l~i~~~~~~~  105 (107)
T 2i45_A           49 DKVLFAVEGDMAVDFADGGSMTIREGEMAVVPKSVSHRPRSE--NGCSLVLIELSDPSE  105 (107)
T ss_dssp             CEEEEESSSCEEEEETTSCEEEECTTEEEEECTTCCEEEEEE--EEEEEEEEECC----
T ss_pred             CEEEEEEeCEEEEEECCCcEEEECCCCEEEECCCCcEeeEeC--CCeEEEEEECCCccc
Confidence            5789999999876  341237899999999997766555553  468888886544333

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=90.40  E-value=1.2  Score=39.17  Aligned_cols=70  Identities=23%  Similarity=0.256  Sum_probs=57.0

Q ss_pred             CCCCCCCCCCCCCCceEEEEEeeceEEEe----cC------CCCeeeeeCCcEEEEecCCCeEEEeeeC-CCCceeEEEE
Q 020448           86 VSPPAGFPDHPHRGFETVTYMLQGGITHQ----DF------SGHKGTIHTGDVQWMTAGRGIVHSEMPA-GEGVQNGLQL  154 (326)
Q Consensus        86 ~~~~~GF~~HPHrG~EtvTyvl~G~l~H~----DS------~Gn~~~i~~GdvQwMtAGsGI~HsE~~~-~~~~~~~lQL  154 (326)
                      ..|+..-|.|=|.+ .-+-+||+|++...    +.      .+...++.+|++-+++..-|-+|+=.|. .+++...|.+
T Consensus        86 w~PGq~spiHdH~~-~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~g~iH~V~N~~~~~~avsLHv  164 (208)
T 2gm6_A           86 WGPGQRTPIHDHTV-WGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDDRVSISIHV  164 (208)
T ss_dssp             ECTTCBCCSBCCSS-CEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSSSCEEEEEE
T ss_pred             eCCCcccCcccCCc-ceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCCCCeEEeccCCCCCcEEEEEE
Confidence            36788899999998 77778999998763    22      2356789999999999999999999988 4677888888


Q ss_pred             Ee
Q 020448          155 WI  156 (326)
Q Consensus       155 Wi  156 (326)
                      .-
T Consensus       165 Y~  166 (208)
T 2gm6_A          165 YG  166 (208)
T ss_dssp             ES
T ss_pred             Ec
Confidence            85

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=89.47  E-value=0.54  Score=37.96  Aligned_cols=45  Identities=18%  Similarity=0.225  Sum_probs=37.7

Q ss_pred             CCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCC
Q 020448           91 GFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRG  136 (326)
Q Consensus        91 GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsG  136 (326)
                      .+..|.|.+ +-+-|||+|++.-.+.-|..-.|++||+-.+.+|.-
T Consensus        60 ~~~~~~~~~-~E~~~Vl~G~~~l~~~~g~~~~l~~GD~~~ip~g~~  104 (123)
T 3bcw_A           60 SFQSNTTGY-IEYCHIIEGEARLVDPDGTVHAVKAGDAFIMPEGYT  104 (123)
T ss_dssp             EEECCCTTE-EEEEEEEEEEEEEECTTCCEEEEETTCEEEECTTCC
T ss_pred             ceeeEcCCC-cEEEEEEEEEEEEEECCCeEEEECCCCEEEECCCCe
Confidence            456787765 777899999999888668889999999999999843

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=88.99  E-value=1.5  Score=42.52  Aligned_cols=76  Identities=12%  Similarity=-0.011  Sum_probs=55.2

Q ss_pred             CCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCC-CCceeEEE
Q 020448           75 LDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAG-EGVQNGLQ  153 (326)
Q Consensus        75 ~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~-~~~~~~lQ  153 (326)
                      ..|-+..-...+.|+...++|-|...| +-||++|+..-.. -|..-.+++||+-+.-+|  ..|+-.|.+ ++++..|-
T Consensus       290 ~~~tl~~~~~~l~PG~~~~~HrH~~~~-v~~VleG~G~~~V-~ge~~~~~~GD~~~iP~g--~~H~~~N~g~~e~~~ll~  365 (394)
T 3bu7_A          290 PMLTMGASMQMLRPGEHTKAHRHTGNV-IYNVAKGQGYSIV-GGKRFDWSEHDIFCVPAW--TWHEHCNTQERDDACLFS  365 (394)
T ss_dssp             SSSSCEEEEEEECTTCBCCCEEESSCE-EEEEEECCEEEEE-TTEEEEECTTCEEEECTT--CCEEEEECCSSCCEEEEE
T ss_pred             CCCeeeEEEEEECCCCcCCCcccCCcE-EEEEEeCeEEEEE-CCEEEEEeCCCEEEECCC--CeEEeEeCCCCCCeEEEE
Confidence            345555555567888888999999776 7899999976665 356678999999777776  557777876 56655444


Q ss_pred             E
Q 020448          154 L  154 (326)
Q Consensus       154 L  154 (326)
                      +
T Consensus       366 i  366 (394)
T 3bu7_A          366 F  366 (394)
T ss_dssp             E
T ss_pred             e
Confidence            3

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=88.72  E-value=1.4  Score=37.07  Aligned_cols=91  Identities=11%  Similarity=0.177  Sum_probs=59.7

Q ss_pred             CCceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCe
Q 020448           58 GDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGI  137 (326)
Q Consensus        58 G~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI  137 (326)
                      ++++.+++++....-..+..-++    .+. +..|+  -|...|=+.|||+|+++-.+ -|..-.++|||+-++.+|.  
T Consensus        49 ~~~v~i~~l~s~~~~~~~s~g~~----~~e-~~~~~--~~~~~eE~~yVLeG~~~l~i-~g~~~~l~~GD~i~iP~G~--  118 (151)
T 4axo_A           49 SDVVYTKDLFTLEESPRLGCGMM----EMK-ETTFD--WTLNYDEIDYVIDGTLDIII-DGRKVSASSGELIFIPKGS--  118 (151)
T ss_dssp             TCCEEEEECSCTTTCSSCEEEEE----EEE-EEEEE--EECSSEEEEEEEEEEEEEEE-TTEEEEEETTCEEEECTTC--
T ss_pred             CCCEEEEEeecCCCCCcEEEEEE----EEc-Ccccc--EeCCCcEEEEEEEeEEEEEE-CCEEEEEcCCCEEEECCCC--
Confidence            46788888888764323332222    122 22344  34467778899999999988 5677889999999999986  


Q ss_pred             EEEeeeCCCCceeEEEEEeccCCCC
Q 020448          138 VHSEMPAGEGVQNGLQLWINLSSSD  162 (326)
Q Consensus       138 ~HsE~~~~~~~~~~lQLWinLP~~~  162 (326)
                      .|.=.+.  +  ...=|||..|+..
T Consensus       119 ~h~~~n~--~--~a~~l~V~~P~~~  139 (151)
T 4axo_A          119 KIQFSVP--D--YARFIYVTYPADW  139 (151)
T ss_dssp             EEEEEEE--E--EEEEEEEEECSCC
T ss_pred             EEEEEeC--C--CEEEEEEECCCCc
Confidence            4553332  2  3455788777643

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=88.61  E-value=0.83  Score=41.20  Aligned_cols=75  Identities=13%  Similarity=0.037  Sum_probs=49.9

Q ss_pred             CccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE----------cCcC-----------ceeecCccEEEEcCCCeE
Q 020448          205 TPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF----------GTVN-----------SSAVSAHNVLVLSLGDGL  263 (326)
Q Consensus       205 ~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i----------~g~~-----------~~~l~~~d~~~l~~g~~l  263 (326)
                      ..+.++.+.+.+|.....-......-++||++|++++          ++..           ...+.+||.+.+..+..=
T Consensus        41 ~~~~~~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~H  120 (239)
T 2xlg_A           41 IGFAIAHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYMH  120 (239)
T ss_dssp             EEEEEEEEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEEE
T ss_pred             CCEEEEEEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEEECCCCCE
Confidence            3567788899998753221222234689999998765          4420           357999999999877655


Q ss_pred             EEEecCCCCeEE-EEEe
Q 020448          264 SAWNRSSKQLRF-VLIA  279 (326)
Q Consensus       264 ~i~a~~~~~a~~-LL~~  279 (326)
                      .+.+.+++++++ +++.
T Consensus       121 ~~~N~~~~~~~~~l~~~  137 (239)
T 2xlg_A          121 GFVNPTDKTLPIVFVWM  137 (239)
T ss_dssp             EEECCSSSCEEEEEEEE
T ss_pred             EEEeCCCCCEEEEEEEE
Confidence            566655567888 4444

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=88.43  E-value=0.56  Score=36.42  Aligned_cols=41  Identities=12%  Similarity=0.046  Sum_probs=31.1

Q ss_pred             CeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEec
Q 020448          228 WNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNR  268 (326)
Q Consensus       228 ~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~  268 (326)
                      ..-++||++|++++  ++.+...|.+||.+.+..+..=.+.+.
T Consensus        49 ~~E~~~Vl~G~~~~~i~~g~~~~l~~GD~i~ip~g~~H~~~n~   91 (101)
T 1o5u_A           49 TNETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVL   91 (101)
T ss_dssp             SCEEEEEEEEEEEEEETTCCEEEEETTCEEEECTTCEEEEEEE
T ss_pred             ceEEEEEEeCEEEEEECCCCEEEECCCCEEEECCCCcEEEEeC
Confidence            45799999999876  412337899999999998776666653

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=88.06  E-value=0.46  Score=38.81  Aligned_cols=60  Identities=13%  Similarity=0.175  Sum_probs=43.6

Q ss_pred             CCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCC
Q 020448           94 DHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSS  160 (326)
Q Consensus        94 ~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~  160 (326)
                      .|.|...+=+-|||+|+++-.+. |..-.+++||+-++.+|.  .|.=.+  .++++.  ||+..|+
T Consensus        69 ~~~h~~~~E~~~VLeG~~~l~~~-g~~~~l~~GD~i~~p~g~--~h~~~~--~~~~~~--l~v~~p~  128 (133)
T 2pyt_A           69 FPWTLNYDEIDMVLEGELHVRHE-GETMIAKAGDVMFIPKGS--SIEFGT--PTSVRF--LYVAWPA  128 (133)
T ss_dssp             EEEECSSEEEEEEEEEEEEEEET-TEEEEEETTCEEEECTTC--EEEEEE--EEEEEE--EEEEEST
T ss_pred             ccccCCCCEEEEEEECEEEEEEC-CEEEEECCCcEEEECCCC--EEEEEe--CCCEEE--EEEEcCC
Confidence            34455567788999999998887 888899999999999996  344333  233433  7775554

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=87.65  E-value=2.7  Score=36.80  Aligned_cols=70  Identities=17%  Similarity=0.229  Sum_probs=55.0

Q ss_pred             CCCCCCCCCCCCCCceEEEEEeeceEEEe--c--CC-------CCeeeeeCCcEEEEecCCCeEEEeeeCC-CCceeEEE
Q 020448           86 VSPPAGFPDHPHRGFETVTYMLQGGITHQ--D--FS-------GHKGTIHTGDVQWMTAGRGIVHSEMPAG-EGVQNGLQ  153 (326)
Q Consensus        86 ~~~~~GF~~HPHrG~EtvTyvl~G~l~H~--D--S~-------Gn~~~i~~GdvQwMtAGsGI~HsE~~~~-~~~~~~lQ  153 (326)
                      ..|+.+-|.|=|.+---+-+||+|++...  |  ..       +...++.+|+|-+|+.--| +|.=.|.+ +++.--|.
T Consensus        77 W~PGq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~~~g-iH~V~N~s~~~~avSlH  155 (200)
T 3eln_A           77 WGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIG-LHRVENVSHTEPAVSLH  155 (200)
T ss_dssp             ECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTC-EEEEECCCSSCCEEEEE
T ss_pred             ECCCCcCCCccCCCceEEEEEEeeeEEEEEeecCCCCcccccccceEEeCCCCEEEecCCCc-EEEEECCCCCCCEEEEE
Confidence            47888899999999888888999998865  2  11       2246899999999975555 79888886 67788888


Q ss_pred             EEe
Q 020448          154 LWI  156 (326)
Q Consensus       154 LWi  156 (326)
                      +.=
T Consensus       156 vY~  158 (200)
T 3eln_A          156 LYS  158 (200)
T ss_dssp             EEE
T ss_pred             eCC
Confidence            885

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=87.37  E-value=2.7  Score=38.96  Aligned_cols=66  Identities=9%  Similarity=0.173  Sum_probs=50.4

Q ss_pred             ECCCCeEEEecCCCCeEEEEEeecc--eEEcCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeeccCC
Q 020448          214 LKPRAQIHQSIPETWNAFVYTIEGE--GVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLN  284 (326)
Q Consensus       214 L~~g~~~~~~~p~~~~~~lyVl~G~--~~i~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl~  284 (326)
                      +-+|++..  -..+...|+++++|+  +++++.. ..|.++|.+.+..+...++++.  +++.+|-+.-.|.+
T Consensus       214 ~G~Ges~~--~~~~~d~wiWqLEGss~Vt~~~q~-~~L~~~DsLLIpa~~~y~~~r~--~gsv~L~I~~~p~~  281 (286)
T 2qnk_A          214 YGQGSSEG--LRQNVDVWLWQLEGSSVVTMGGRR-LSLAPDDSLLVLAGTSYAWERT--QGSVALSVTQDPAC  281 (286)
T ss_dssp             ECSEEEEE--CCCSSCEEEEEEESCEEEEETTEE-EEECTTEEEEECTTCCEEEEEC--TTCEEEEEEECGGG
T ss_pred             EcCCcccc--ccCcCcEEEEEEcCceEEEECCeE-EeccCCCEEEecCCCeEEEEec--CCeEEEEEEECccc
Confidence            35555543  334458999999999  5556622 5699999999998888999884  68999999888863

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=87.35  E-value=3.1  Score=32.31  Aligned_cols=51  Identities=6%  Similarity=0.054  Sum_probs=34.4

Q ss_pred             CCeEEEEEeecceEE--cCcCc--eeecCccEEEEcCCCeEEEEecCCC-CeEEEEE
Q 020448          227 TWNAFVYTIEGEGVF--GTVNS--SAVSAHNVLVLSLGDGLSAWNRSSK-QLRFVLI  278 (326)
Q Consensus       227 ~~~~~lyVl~G~~~i--~g~~~--~~l~~~d~~~l~~g~~l~i~a~~~~-~a~~LL~  278 (326)
                      ...-++||++|++++  ++ +.  ..|.+||.+.+..+..=.+.+.+++ .+.+|.+
T Consensus        52 ~~~E~~~Vl~G~~~l~~~~-~~~~~~l~~Gd~i~ipa~~~H~~~n~~~~~~~~~l~v  107 (112)
T 2opk_A           52 PQDEWVMVVSGSAGIECEG-DTAPRVMRPGDWLHVPAHCRHRVAWTDGGEPTVWLAV  107 (112)
T ss_dssp             SSEEEEEEEESCEEEEETT-CSSCEEECTTEEEEECTTCCEEEEEECSSSCEEEEEE
T ss_pred             CccEEEEEEeCeEEEEECC-EEEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEE
Confidence            456899999998776  44 33  5799999999997665445554332 3443433

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=87.01  E-value=1.2  Score=33.10  Aligned_cols=48  Identities=13%  Similarity=0.245  Sum_probs=36.3

Q ss_pred             eEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          229 NAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       229 ~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      .-++||++|++.+  ++ +...+.+||.+.+..+..=.+.+.  .++++|++.
T Consensus        51 ~e~~~v~~G~~~~~~~~-~~~~l~~Gd~~~ip~~~~H~~~~~--~~~~~l~i~  100 (102)
T 3d82_A           51 DEVFIVMEGTLQIAFRD-QNITLQAGEMYVIPKGVEHKPMAK--EECKIMIIE  100 (102)
T ss_dssp             CEEEEEEESEEEEECSS-CEEEEETTEEEEECTTCCBEEEEE--EEEEEEEEE
T ss_pred             cEEEEEEeCEEEEEECC-EEEEEcCCCEEEECCCCeEeeEcC--CCCEEEEEE
Confidence            5799999999876  34 237899999999997766555553  367888775

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=86.20  E-value=2.5  Score=36.03  Aligned_cols=85  Identities=7%  Similarity=-0.090  Sum_probs=59.0

Q ss_pred             CceEEEEecCCCCCCCCCceEEeecccCCC-CCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCe
Q 020448           59 DGAVVRRAIGRGDLRSLDPFLMLDEFSVSP-PAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGI  137 (326)
Q Consensus        59 ~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~-~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI  137 (326)
                      +.+++..+|.... ..+.++++    .+.| +...++|.|+.-|-+-||++|+++-.=. |..-.|++||.-...+  |.
T Consensus        73 ~~~~fa~~fs~~~-~~~~~~~v----~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl~-g~~~~L~~Gds~~iP~--g~  144 (166)
T 2vpv_A           73 ENFALEIMFDKHK-EYFASGIL----KLPAISGQKKLSNSFRTYITFHVIQGIVEVTVC-KNKFLSVKGSTFQIPA--FN  144 (166)
T ss_dssp             CBCCCCEECCTTT-CSCEEEEE----EECSSGGGCEEEECCSEEEEEEEEESEEEEEET-TEEEEEETTCEEEECT--TC
T ss_pred             CCEEEEEeecCCc-ccceeEEE----EECCCCCCCCCccCCCceEEEEEEEeEEEEEEC-CEEEEEcCCCEEEECC--CC
Confidence            4566666665431 34555544    3566 5456666667778899999999876432 4456899999999988  57


Q ss_pred             EEEeeeCCCCceeE
Q 020448          138 VHSEMPAGEGVQNG  151 (326)
Q Consensus       138 ~HsE~~~~~~~~~~  151 (326)
                      .|+=.|..+.++++
T Consensus       145 ~H~~~N~~d~~Arl  158 (166)
T 2vpv_A          145 EYAIANRGNDEAKM  158 (166)
T ss_dssp             EEEEEECSSSCEEE
T ss_pred             CEEEEECCCCCEEE
Confidence            89999987666544

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=85.99  E-value=1.5  Score=38.34  Aligned_cols=63  Identities=24%  Similarity=0.400  Sum_probs=46.4

Q ss_pred             CCCCCCCCceEEEEEeeceEEEe--cCCCCe--eeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEec
Q 020448           92 FPDHPHRGFETVTYMLQGGITHQ--DFSGHK--GTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWIN  157 (326)
Q Consensus        92 F~~HPHrG~EtvTyvl~G~l~H~--DS~Gn~--~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWin  157 (326)
                      |+.|-|.. +-|.|+++|+....  |.-|..  -.+++||+-+..||  +.|.-....+..+..+.|+.+
T Consensus        97 ~~~H~H~~-~Ei~yVleG~G~f~i~d~~d~~~~i~v~~GDlIiIPaG--~~H~f~~~~~~~~~airlF~~  163 (191)
T 1vr3_A           97 FEEHLHLD-EEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAG--IYHRFTLDEKNYVKAMRLFVG  163 (191)
T ss_dssp             HSCEECSS-CEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTT--CCEEEEECTTCCEEEEEEESS
T ss_pred             CcceECCc-ceEEEEEeceEEEEECCCCCeEEEEEECCCCEEEECcC--CcCCcccCCCCCEEEEEEECC
Confidence            58899987 56689999886654  322332  37899999998885  888876655666778888874

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=85.84  E-value=4.3  Score=38.94  Aligned_cols=70  Identities=20%  Similarity=0.153  Sum_probs=49.3

Q ss_pred             cEEEEEEECCCCeEEEecCCCCeEEEEEeecceE---EcCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEE
Q 020448          207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGV---FGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLI  278 (326)
Q Consensus       207 ~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~---i~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~  278 (326)
                      +...-..|.+|++..--... .....||++|+..   ++|+ ...+++||++.+..+..=.+.+.+++++.+|-+
T Consensus       103 L~a~~~~l~PG~~~~~HrH~-~~ev~~VleG~G~~~~vdG~-~~~~~~GD~v~iP~g~~H~~~N~gde~l~~l~v  175 (368)
T 3nw4_A          103 MWAAIQYLGPRETAPEHRHS-QNAFRFVVEGEGVWTVVNGD-PVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDG  175 (368)
T ss_dssp             CEEEEEEECTTCEEEEEEES-SCEEEECSSCEEEEEEETTE-EEEEETTCEEEECTTCCEEEEECSSSCEEEEEE
T ss_pred             eEEEEEEECCCCccCceecc-cceEEEEEecceEEEEECCE-EEEEeCCCEEEECCCCcEEeEeCCCCCeEEEEe
Confidence            44444588999876533332 3589999999874   5663 378999999999988777777765556665543

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=85.58  E-value=3.1  Score=35.54  Aligned_cols=71  Identities=14%  Similarity=0.251  Sum_probs=53.6

Q ss_pred             CCCCCCCCCCCCCCceEEEEEeeceEEEe--cCC-C-----CeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEec
Q 020448           86 VSPPAGFPDHPHRGFETVTYMLQGGITHQ--DFS-G-----HKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWIN  157 (326)
Q Consensus        86 ~~~~~GF~~HPHrG~EtvTyvl~G~l~H~--DS~-G-----n~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWin  157 (326)
                      ..|+.+-+.|=|.+-.-+-+||+|+++..  +-. |     ....+.+|++ + .+++|-+|.=.|.++++..-|.+.  
T Consensus        76 W~PGq~S~iHdH~~s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~-~-~~~~~~iH~V~N~~~~~aVSlHvY--  151 (171)
T 3eqe_A           76 IPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGEC-L-ISTKGLIHKMSNPTSERMVSLHVY--  151 (171)
T ss_dssp             ECTTCBCCEECCTTCEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCE-E-EECTTCEEEEECCSSSCEEEEEEE--
T ss_pred             ECCCCCcccccCCCceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcE-E-EeCCCCEEEEECCCCCCEEEEEEe--
Confidence            57888889999999888999999999863  211 2     2567999999 4 456799999988877666566555  


Q ss_pred             cCC
Q 020448          158 LSS  160 (326)
Q Consensus       158 LP~  160 (326)
                      -|+
T Consensus       152 ~pp  154 (171)
T 3eqe_A          152 SPP  154 (171)
T ss_dssp             ESC
T ss_pred             CCC
Confidence            454

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=85.21  E-value=18  Score=35.30  Aligned_cols=62  Identities=10%  Similarity=0.107  Sum_probs=42.9

Q ss_pred             ccEEEEEEEC--CCCeEEEecCCCCeEEEEEeecceEEcCcCc----eeecCccEEEEcCCCeEEEEec
Q 020448          206 PTMFLDFTLK--PRAQIHQSIPETWNAFVYTIEGEGVFGTVNS----SAVSAHNVLVLSLGDGLSAWNR  268 (326)
Q Consensus       206 ~~~~~di~L~--~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~~----~~l~~~d~~~l~~g~~l~i~a~  268 (326)
                      ...+..+.+.  ++++.++. +...-..+.|++|+++|+....    ..|..|+.+.+..+..++|++.
T Consensus       356 eF~v~~~~~~~~~~~~~~~~-~~~~~~illv~~G~g~i~~~~~~~~~~~l~~G~~~fvpa~~~~~i~g~  423 (440)
T 1pmi_A          356 EFSVLQTIFDKSKGGKQVIE-GLNGPSIVIATNGKGTIQITGDDSTKQKIDTGYVFFVAPGSSIELTAD  423 (440)
T ss_dssp             SCEEEEEECCTTTCCEEEEC-CCSSCEEEEEEESEEEEEETTCGGGCEEEETTCEEEECTTCCEEEEEC
T ss_pred             eEEEEEEEecCCCCceeEEe-cCCCcEEEEEEeCeEEEEeCCcccceEEeccCCEEEEeCCCcEEEEEe
Confidence            4566667777  45455542 2233467889999999964222    4799999999996678888874

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=84.68  E-value=4.5  Score=35.79  Aligned_cols=70  Identities=23%  Similarity=0.262  Sum_probs=56.8

Q ss_pred             CCCCCCCCCCCCCCceEEEEEeeceEEE----ecCC------CCeeeeeCCcEEEEecCCCeEEEeeeCC-CCceeEEEE
Q 020448           86 VSPPAGFPDHPHRGFETVTYMLQGGITH----QDFS------GHKGTIHTGDVQWMTAGRGIVHSEMPAG-EGVQNGLQL  154 (326)
Q Consensus        86 ~~~~~GF~~HPHrG~EtvTyvl~G~l~H----~DS~------Gn~~~i~~GdvQwMtAGsGI~HsE~~~~-~~~~~~lQL  154 (326)
                      ..|+.+-|.|=|. ..-+-.||+|++..    ++.-      |...++.+|++-++..+-|=+|.-.|.. +++.--|.+
T Consensus        80 W~PGq~spiHDH~-swg~~~Vl~G~l~e~~y~~~~~g~~~~~~~~~~l~~G~v~~~~p~~g~IH~V~N~~~d~~avSLHv  158 (211)
T 3uss_A           80 WGPGQITPVHDHR-VWGLIGMLRGAEYSQPYAFDAGGRPHPSGARRRLEPGEVEALSPRIGDVHQVSNAFSDRTSISIHV  158 (211)
T ss_dssp             ECTTCBCCSBCCS-SCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSSSCEEEEEE
T ss_pred             ECCCCcCCCCCCC-eeEEEEeeeceEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCCEEEEccCCCCCCEEEEEE
Confidence            3678888999999 78888999999877    2232      3347899999999999999889988875 577778888


Q ss_pred             Ee
Q 020448          155 WI  156 (326)
Q Consensus       155 Wi  156 (326)
                      .-
T Consensus       159 Yg  160 (211)
T 3uss_A          159 YG  160 (211)
T ss_dssp             ES
T ss_pred             cC
Confidence            74

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=84.09  E-value=9  Score=32.36  Aligned_cols=60  Identities=17%  Similarity=0.099  Sum_probs=42.4

Q ss_pred             EEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCcCceeecCccEEEEcCCCeEEEEec
Q 020448          208 MFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNR  268 (326)
Q Consensus       208 ~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~~~~l~~~d~~~l~~g~~l~i~a~  268 (326)
                      .+.-+++++|+.+..-.. .....+|||+|++...+.....+.+||.+....+..-...+.
T Consensus        44 ~v~lvr~~pG~~~p~H~H-~g~ee~~VL~G~f~~~~~~~~~~~aGd~~~~P~g~~H~~~a~  103 (165)
T 3cjx_A           44 MVMRASFAPGLTLPLHFH-TGTVHMYTISGCWYYTEYPGQKQTAGCYLYEPGGSIHQFNTP  103 (165)
T ss_dssp             EEEEEEECTTCBCCEEEE-SSCEEEEEEESEEEETTCTTSCEETTEEEEECTTCEECEECC
T ss_pred             EEEEEEECCCCcCCcccC-CCCEEEEEEEEEEEECCCceEEECCCeEEEeCCCCceeeEeC
Confidence            455678899987532221 135899999999998542125678999999998877666653

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=83.76  E-value=1.5  Score=35.29  Aligned_cols=50  Identities=10%  Similarity=0.037  Sum_probs=40.1

Q ss_pred             CCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecC-CCeEEE
Q 020448           90 AGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAG-RGIVHS  140 (326)
Q Consensus        90 ~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAG-sGI~Hs  140 (326)
                      ..|+.+.+...| +-|+|+|+++-.+.-|....++|||+-.+-|| +|..+.
T Consensus        52 G~~~~~~~~~~E-~~~iLeG~~~lt~ddG~~~~l~aGD~~~~P~G~~gtWev  102 (116)
T 3es4_A           52 GIYNYAGRDLEE-TFVVVEGEALYSQADADPVKIGPGSIVSIAKGVPSRLEI  102 (116)
T ss_dssp             EEEEECCCSEEE-EEEEEECCEEEEETTCCCEEECTTEEEEECTTCCEEEEE
T ss_pred             ceeECeeCCCcE-EEEEEEeEEEEEeCCCeEEEECCCCEEEECCCCeEEEEE
Confidence            357766665546 56999999999888899999999999999999 566543

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=83.51  E-value=0.99  Score=45.43  Aligned_cols=65  Identities=9%  Similarity=0.080  Sum_probs=49.2

Q ss_pred             cCCCCCCCCCCCCCCceEEEEEeeceEE--EecCCCCe---eeeeCCcEEEEecCCCeEEEeeeCCCCceeEE
Q 020448           85 SVSPPAGFPDHPHRGFETVTYMLQGGIT--HQDFSGHK---GTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGL  152 (326)
Q Consensus        85 ~~~~~~GF~~HPHrG~EtvTyvl~G~l~--H~DS~Gn~---~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~l  152 (326)
                      .+.|++-+++|-|.+-.=+.||++|.+.  --|+-|+.   ..|++|||-++-+|  +.|.+... +..+.++
T Consensus       400 ~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~v~P~G--~~H~~~ag-~e~l~fl  469 (531)
T 3fz3_A          400 FFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIVPQN--HGVIQQAG-NQGFEYF  469 (531)
T ss_dssp             EECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTT--CEEEEEEE-EEEEEEE
T ss_pred             EeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEEEECCC--CeEEEecC-CCCEEEE
Confidence            3466666789999887777899998754  66777875   57999999999997  66777643 4456665

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=83.40  E-value=0.73  Score=39.83  Aligned_cols=63  Identities=14%  Similarity=0.158  Sum_probs=44.3

Q ss_pred             CCCCCCCCceEEEEEeeceEEEe-cCCCCe--eeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEec
Q 020448           92 FPDHPHRGFETVTYMLQGGITHQ-DFSGHK--GTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWIN  157 (326)
Q Consensus        92 F~~HPHrG~EtvTyvl~G~l~H~-DS~Gn~--~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWin  157 (326)
                      |+.|-|.. +=|.||++|+.... ..-|..  -.+++||+-+..+|  +.|.-.+..+..+..+.++.+
T Consensus        93 ~~~H~H~~-~Ei~~Vl~G~g~~~i~~~d~~~~~~l~~GDli~IP~g--~~H~~~~~~~~~~~~ir~F~~  158 (179)
T 1zrr_A           93 LNEHTHGE-DEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAH--TPHWFDMGSEPNFTAIRIFDN  158 (179)
T ss_dssp             HSCBEESS-CEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTT--CCBCCCCSSCSSCEEEEEECC
T ss_pred             ccceECCh-heEEEEEcceEEEEEEeCCEEEEEEECCCCEEEECCC--CeEeeecCCCceEEEEEeccC
Confidence            68899987 55689999997662 111333  45899999988885  788765544455667777764

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=83.24  E-value=1.5  Score=35.28  Aligned_cols=54  Identities=17%  Similarity=0.059  Sum_probs=36.6

Q ss_pred             EEECCCCeEEEecCCCC-eEEEEEeecceEEc--CcCceeecCccEEEEcCCCeEEEEec
Q 020448          212 FTLKPRAQIHQSIPETW-NAFVYTIEGEGVFG--TVNSSAVSAHNVLVLSLGDGLSAWNR  268 (326)
Q Consensus       212 i~L~~g~~~~~~~p~~~-~~~lyVl~G~~~i~--g~~~~~l~~~d~~~l~~g~~l~i~a~  268 (326)
                      ..+++|.. .  ..... .-++||++|++.+.  +.+...|.+||.+.+..+..-++++.
T Consensus        54 w~~~pG~~-~--~~~~~~~E~~~Vl~G~~~l~~~~g~~~~l~~GD~~~ip~g~~h~~~~~  110 (123)
T 3bcw_A           54 WESTSGSF-Q--SNTTGYIEYCHIIEGEARLVDPDGTVHAVKAGDAFIMPEGYTGRWEVD  110 (123)
T ss_dssp             EEEEEEEE-E--CCCTTEEEEEEEEEEEEEEECTTCCEEEEETTCEEEECTTCCCEEEEE
T ss_pred             EEECCCce-e--eEcCCCcEEEEEEEEEEEEEECCCeEEEECCCCEEEECCCCeEEEEEC
Confidence            34556543 2  23333 78999999998774  32336899999999997766555553

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=83.02  E-value=4.8  Score=32.27  Aligned_cols=53  Identities=9%  Similarity=0.086  Sum_probs=36.7

Q ss_pred             EECCCCeEEEecCCCCe-EEEEEeecceEEc--CcCceeecCccEEEEcCCCeEEEEec
Q 020448          213 TLKPRAQIHQSIPETWN-AFVYTIEGEGVFG--TVNSSAVSAHNVLVLSLGDGLSAWNR  268 (326)
Q Consensus       213 ~L~~g~~~~~~~p~~~~-~~lyVl~G~~~i~--g~~~~~l~~~d~~~l~~g~~l~i~a~  268 (326)
                      ...+|+ +.+..  ..+ =|+|+|+|++++-  +.+...+.+||.+.|..|-.-+-+..
T Consensus        48 e~tPG~-~~~~~--~~~~E~~~iLeG~~~lt~ddG~~~~l~aGD~~~~P~G~~gtWev~  103 (116)
T 3es4_A           48 MAEPGI-YNYAG--RDLEETFVVVEGEALYSQADADPVKIGPGSIVSIAKGVPSRLEIL  103 (116)
T ss_dssp             EECSEE-EEECC--CSEEEEEEEEECCEEEEETTCCCEEECTTEEEEECTTCCEEEEEC
T ss_pred             ecCCce-eECee--CCCcEEEEEEEeEEEEEeCCCeEEEECCCCEEEECCCCeEEEEEe
Confidence            456664 33222  334 7999999999993  22236899999999998877666653

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=81.98  E-value=24  Score=31.28  Aligned_cols=92  Identities=10%  Similarity=0.009  Sum_probs=62.3

Q ss_pred             EEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeE
Q 020448          186 EVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGL  263 (326)
Q Consensus       186 ~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l  263 (326)
                      -.-.|.|.    .++ ....++.+.-+.+.+|..+-.-..+ ..-..||++|.+++  ++.+...+.+||.+.+..+..=
T Consensus       116 a~~elvGP----~g~-~~s~~l~lG~v~l~PG~~yP~HsHp-~EEiy~VLsG~~e~~v~~g~~~~l~pGd~v~ipsgv~H  189 (217)
T 4b29_A          116 GWFELAGP----SGH-FLTQSLRVTVGYWGPGLDYGWHEHL-PEELYSVVSGRALFHLRNAPDLMLEPGQTRFHPANAPH  189 (217)
T ss_dssp             EEEEEEET----TSS-EECSSCEEEEEEECSSCEEEEEECS-SEEEEEEEEECEEEEETTSCCEEECTTCEEEECTTCCE
T ss_pred             eEEEEECC----CCC-CCCCeEEEEEEEECCCCcCCCCCCC-CceEEEEEeCCEEEEECCCCEEecCCCCEEEcCCCCce
Confidence            45566665    244 3456677777899999874332222 34788999999655  6444578999999999987766


Q ss_pred             EEEecCCCCeE-EEEEeeccCC
Q 020448          264 SAWNRSSKQLR-FVLIAGQPLN  284 (326)
Q Consensus       264 ~i~a~~~~~a~-~LL~~G~pl~  284 (326)
                      .+++. ++++. +.+-.|.|+.
T Consensus       190 a~rt~-dePllalwvW~G~~~~  210 (217)
T 4b29_A          190 AMTTL-TDPILTLVLWRGAGLG  210 (217)
T ss_dssp             EEECC-SSCEEEEEEEESTTTT
T ss_pred             eEEEC-CccEEEEEEEeCCCCC
Confidence            66654 45654 5556778873

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=81.64  E-value=1.3  Score=43.78  Aligned_cols=67  Identities=15%  Similarity=0.138  Sum_probs=49.4

Q ss_pred             CCCCCCCCCCCCCCceEEEEEeece--EEEecCCCCee---eeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEE
Q 020448           86 VSPPAGFPDHPHRGFETVTYMLQGG--ITHQDFSGHKG---TIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLW  155 (326)
Q Consensus        86 ~~~~~GF~~HPHrG~EtvTyvl~G~--l~H~DS~Gn~~---~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLW  155 (326)
                      +.+++-+++|-|.+-.-+.||++|.  +.--|+-|+..   .|++|||-+.-+|  ..|...+ .+..+++|=+.
T Consensus       329 l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~v~P~G--~~H~~~n-g~~~~~~l~~~  400 (459)
T 2e9q_A          329 LYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLMIPQN--FVVIKRA-SDRGFEWIAFK  400 (459)
T ss_dssp             ECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTT--CEEEEEE-EEEEEEEEEEE
T ss_pred             eeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEEEECCC--CEEEEEe-CCCCeEEEEEe
Confidence            4566567899999888889999875  66778888875   4999999999976  5677777 33445544433

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=81.16  E-value=6.5  Score=31.43  Aligned_cols=59  Identities=14%  Similarity=0.174  Sum_probs=43.3

Q ss_pred             CCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCC-CceeEEEEEe
Q 020448           94 DHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGE-GVQNGLQLWI  156 (326)
Q Consensus        94 ~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~-~~~~~lQLWi  156 (326)
                      +|-|..+| +.|+++|...+.-. |..-.+++||+-++.+|  ..|+-.+..+ .+.+.+=+.+
T Consensus        33 p~~h~~~~-i~~v~~G~~~~~i~-~~~~~l~~Gd~~~i~p~--~~H~~~~~~~~~~~~~~~i~f   92 (164)
T 2arc_A           33 PLGMKGYI-LNLTIRGQGVVKNQ-GREFVCRPGDILLFPPG--EIHHYGRHPEAREWYHQWVYF   92 (164)
T ss_dssp             TTCCSSEE-EEEEEEECEEEEET-TEEEEECTTCEEEECTT--CCEEEEECTTSSEEEEEEEEE
T ss_pred             ccCCCceE-EEEEEEeEEEEEEC-CEEEEecCCeEEEEcCC--CCEEEEeCCCCCcEEEEEEEE
Confidence            67777776 77999999998742 45678999999999986  5888665542 5555554444

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}

Probab=80.93  E-value=5.4  Score=36.66  Aligned_cols=44  Identities=11%  Similarity=0.247  Sum_probs=36.0

Q ss_pred             EEEEEeecceEEcCcCceeecCccEEEEcCCC---eEEEEecCCCCeEEEEE
Q 020448          230 AFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGD---GLSAWNRSSKQLRFVLI  278 (326)
Q Consensus       230 ~~lyVl~G~~~i~g~~~~~l~~~d~~~l~~g~---~l~i~a~~~~~a~~LL~  278 (326)
                      +=+||++|++.+++   ..+..+.-..+..|.   .+++-.  .+++++|+|
T Consensus       113 ~E~fVL~G~i~~G~---~~l~~h~Y~f~PaGV~~~~~kv~~--~~g~~iL~f  159 (303)
T 2qdr_A          113 LEIFVIKGAIQLGE---WQLNKHSYSFIPAGVRIGSWKVLG--GEEAEILWM  159 (303)
T ss_dssp             EEEEEEESEEEETT---EEECTTEEEEECTTCCBCCEEEET--TSCEEEEEE
T ss_pred             eEEEEEEeEEEeCC---EEecCCceEEecCCCccCceeecC--CCCcEEEEE
Confidence            45999999999999   999999999998654   355533  468999999

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=80.73  E-value=2  Score=42.90  Aligned_cols=65  Identities=12%  Similarity=0.151  Sum_probs=49.8

Q ss_pred             CCCCCCCCCCCCCCceEEEEEeece--EEEecCCCCee---eeeCCcEEEEecCCCeEEEeeeCCCCceeEEE
Q 020448           86 VSPPAGFPDHPHRGFETVTYMLQGG--ITHQDFSGHKG---TIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQ  153 (326)
Q Consensus        86 ~~~~~GF~~HPHrG~EtvTyvl~G~--l~H~DS~Gn~~---~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQ  153 (326)
                      +.|++-+++|-|..-.-+.||++|.  +.--|+-|+..   .|++|||-++-+|.  .|...+. +..+++|=
T Consensus       365 L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v~P~G~--~H~~~a~-~e~~~~l~  434 (496)
T 3ksc_A          365 LHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRALTVPQNY--AVAAKSL-SDRFSYVA  434 (496)
T ss_dssp             EETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTC--EEEEEEC-SSEEEEEE
T ss_pred             eeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecCCeEEEECCCC--EEEEEeC-CCCEEEEE
Confidence            4566667899998887889999876  66788888863   59999999999975  5677765 45566553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	326
d1j1la_	288	b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId:	2e-95
d1tq5a1	231	b.82.1.12 (A:1-231) Hypothetical protein YhhW {Esc	3e-39

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  282 bits (723), Expect = 2e-95
 Identities = 148/284 (52%), Positives = 198/284 (69%), Gaps = 2/284 (0%)

Query: 43  PRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFET 102
            + V   V  +   +G GA VRR+IGR +L++LDPFL+ DEF    P GFPDHPHRGFET
Sbjct: 2   SKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFET 61

Query: 103 VTYMLQGGITHQDFS-GHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSS 161
           V+Y+L+GG    +   GH G ++ GD+QWMTAGRGI+H+EMP  E   +GLQLW+NL SS
Sbjct: 62  VSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRSS 121

Query: 162 DKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIH 221
           +KM+EP+YQE+ SEEI +   DGV V +I+GE++G++S VYTRTPT++LDF L P A+  
Sbjct: 122 EKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHS 181

Query: 222 QSIPETWNAFVYTIEGEGVFG-TVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAG 280
           Q IP+ W +F+YTI G+   G       +  H+  VL  GD +   N+  K+  FVLIAG
Sbjct: 182 QPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAG 241

Query: 281 QPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQ 324
           +PL EPV+Q+GPFVMN+  EI Q I D++  KNGFE AK W+S+
Sbjct: 242 EPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSK 285

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]} Length = 231

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

 Score =  136 bits (343), Expect = 3e-39
 Identities = 40/213 (18%), Positives = 79/213 (37%), Gaps = 14/213 (6%)

Query: 71  DLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQW 130
           +        ++++  +    GF  HPH+  E +TY+L+G + HQD  G+K  +  G+ Q 
Sbjct: 33  NFMGFSALRVINDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQDSMGNKEQVPAGEFQI 92

Query: 131 MTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRII 190
           M+AG GI HSE       +  L     +   + +  PRY++   + ++         + +
Sbjct: 93  MSAGTGIRHSEYNPSSTERLHLYQIWIMPEENGI-TPRYEQRRFDAVQG--------KQL 143

Query: 191 AGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVS 250
                     +          + L    Q    I      ++  ++G     T+N    S
Sbjct: 144 VLSPDARDGSLKVHQDMELYRWALLKDEQSVHQIAAERRVWIQVVKGN---VTINGVKAS 200

Query: 251 AHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPL 283
             + L +     +S    +      +L    P+
Sbjct: 201 TSDGLAIWDEQAISI--HADSDSEVLLFDLPPV 231

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	326
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	100.0
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	98.92
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	98.78
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	98.58
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	98.57
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	98.34
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	97.94
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	97.85
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	97.83
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	97.54
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	97.48
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	97.41
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	97.37
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	97.17
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	97.14
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	97.09
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	97.06
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	96.9
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	96.73
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	96.58
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	96.45
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	96.39
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	96.34
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	96.28
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	96.16
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	96.06
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	95.73
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	95.71
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	95.68
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	95.41
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	95.36
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	95.22
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	95.1
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	95.09
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	94.52
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	94.26
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	94.25
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	94.02
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	93.86
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	93.53
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	93.46
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	92.8
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	92.77
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	92.14
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	90.96
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	90.55
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	90.35
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	88.86
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	88.77
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	88.74
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	87.96
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	86.98
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	86.82
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	85.99
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	84.0
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	83.64
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	82.83
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	80.99
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	80.95

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-89  Score=642.80  Aligned_cols=284  Identities=53%  Similarity=0.974  Sum_probs=272.1

Q ss_pred             ccccceEEcCCccCCCCceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeec-eEEEecCCCCee
Q 020448           43 PRMVAKKVHGKLSHDGDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQG-GITHQDFSGHKG  121 (326)
Q Consensus        43 ~r~i~~~~~~~~~~~G~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G-~l~H~DS~Gn~~  121 (326)
                      .|+|.+.+.++++.+|+|++|+|+||.+..+.+|||+||||+.+.++.||++||||||||||||++| .++|+||+||.+
T Consensus         2 ~~~~~~~~~~~~~~~g~G~~v~R~~~~~~~~~~~Pf~~~d~~~~~~~~gf~~HPH~g~e~vTy~~~G~~~~H~Ds~G~~~   81 (288)
T d1j1la_           2 SKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHEDFCGHTG   81 (288)
T ss_dssp             CCCEEEEEECCEEEETBTEEEEECTTSTTCCCCTTEEEEEEEEECTTCBEEEEEEBSEEEEEEECSSSCEEEEETTSCEE
T ss_pred             CceEEEEEcCccccccCCEEEEEeCCCCCccccCceEEeEcCcCCCCCCCCCCCcCCeEEEEEEEeCCeEEEecCCCCee
Confidence            6899999999999999999999999999999999999999999999999999999999999999998 599999999999


Q ss_pred             eeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCCCCCCCCCCccccCCCccceecCCCeEEEEEeCCCCCCcCcc
Q 020448          122 TIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPV  201 (326)
Q Consensus       122 ~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~~~k~~~P~Y~~~~~~~iP~~~~~g~~~rViaG~~~g~~sp~  201 (326)
                      +|++|||||||||+||+|||+|..++++|+||||||||++.|+.+|+|+++.++++|..+.++..+||++|++.+.++|+
T Consensus        82 ~i~~G~vq~mtAG~Gi~HsE~~~~~~~~~~lQiWinlp~~~k~~~P~y~~~~~~diP~~~~~~~~~~vi~G~~~g~~~pi  161 (288)
T d1j1la_          82 KMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKV  161 (288)
T ss_dssp             EECTTCEEEEECTTCEEEEEEECSSSCEEEEEEEEECCGGGTTSCCEEEEECGGGSCCCEETTEEEEEEESEETTEECCC
T ss_pred             EecCCCEEEEecccceEecccccccccceeeEEEecCChhhccccccccccccccCcccccccceEEEEecccccccccc
Confidence            99999999999999999999998888999999999999999999999999999999999878899999999999999999


Q ss_pred             cccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCcC-ceeecCccEEEEcCCCeEEEEecCCCCeEEEEEee
Q 020448          202 YTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVN-SSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAG  280 (326)
Q Consensus       202 ~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~-~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G  280 (326)
                      .+++++.++|++|++|+++++++|+++++|+||++|++.|++.. ...+..++++.+.+++.+++++.++++++||||+|
T Consensus       162 ~~~s~~~~~~i~l~~g~~~~~~l~~~~~~~lyvi~G~~~v~g~~~~~~l~~~~~~~l~~gd~~~i~~~~~~~a~~LLl~G  241 (288)
T d1j1la_         162 YTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAG  241 (288)
T ss_dssp             CCSSCEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEESCTTSCEEECTTEEEEECSCSEEEEECCSSSCEEEEEEEE
T ss_pred             ccCCchhhhhhhcccCceEEEecCCCCeEEEEEEEeeEEecCcccceeecCceEEEEcCCCeEEEEeCCCCCCEEEEEEC
Confidence            99999999999999999999999999999999999999998643 25789999999999999999876557899999999


Q ss_pred             ccCCCceeeeCCcccCcHHHHHHHHHHHhccCCCCCCCCCccccCC
Q 020448          281 QPLNEPVVQYGPFVMNSQAEIDQTIEDYQLCKNGFENAKYWRSQSQ  326 (326)
Q Consensus       281 ~pl~epi~~~GpFVmnt~~ei~~A~~dy~~g~~g~~~~~~w~~~~~  326 (326)
                      +||+|||++||||||||++||+|||+|||+|+|||+++|+|+|+|+
T Consensus       242 ~Pi~EPv~~~GPFVmnt~eeI~qA~~dy~~g~fGf~~~~~w~~~~~  287 (288)
T d1j1la_         242 EPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSKIG  287 (288)
T ss_dssp             CCCCSCCEEETTEEESSHHHHHHHHHHHHTTCTTCGGGSSCCCSTT
T ss_pred             CcCCCCEEeeCCcccCCHHHHHHHHHHHHcCCCCCCcCCCCccccC
Confidence            9999999999999999999999999999999999999999999996

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.2e-57  Score=409.98  Aligned_cols=210  Identities=20%  Similarity=0.330  Sum_probs=189.4

Q ss_pred             CceEEEEecCCC-----CCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEec
Q 020448           59 DGAVVRRAIGRG-----DLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTA  133 (326)
Q Consensus        59 ~g~~v~r~~~~~-----~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtA  133 (326)
                      +.+..++.|...     ...+||||+|+|++.++|++||++||||||||||||++|+++|+||+||.++|++||||||||
T Consensus        16 ~wl~s~~~Fsf~~y~dp~~~~fg~l~v~ndd~~~pg~gf~~HpH~g~eivT~vl~G~~~H~DS~G~~~~i~~G~vq~mtA   95 (231)
T d1tq5a1          16 GWLDSWHTFSFANYYDPNFMGFSALRVINDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQDSMGNKEQVPAGEFQIMSA   95 (231)
T ss_dssp             SSEEEEESSCBTTBCCSSCSCBTTEEEEEEEEECTTCEEEEEEECSCEEEEEEEESEEEEEESSSCEEEEETTCEEEEEC
T ss_pred             CCCcceEeeecCCccCccccCCCceEEEecceecCCCCCCCCCcCCeeEEEEEEeEEEEECCCCCCcEEECCCcEEEEec
Confidence            479999988753     467899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEeeeCC-CCceeEEEEEeccCCCCCCCCCCccccCCCccceecCCCeEEEEEeCCCCCCcCcccccCccEEEEE
Q 020448          134 GRGIVHSEMPAG-EGVQNGLQLWINLSSSDKMIEPRYQEIPSEEIKRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDF  212 (326)
Q Consensus       134 GsGI~HsE~~~~-~~~~~~lQLWinLP~~~k~~~P~Y~~~~~~~iP~~~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di  212 (326)
                      |+||+|||+|.. ++++|+||||| +|++ ++.+|+|++++.+.++      .  +++++...+.++|+++++++.++++
T Consensus        96 G~Gi~HsE~~~~~~~~~~~lQiWi-~P~~-~~~~p~y~~~~~~~~~------~--~~~~~~~~g~~~~~~~~~~~~l~~~  165 (231)
T d1tq5a1          96 GTGIRHSEYNPSSTERLHLYQIWI-MPEE-NGITPRYEQRRFDAVQ------G--KQLVLSPDARDGSLKVHQDMELYRW  165 (231)
T ss_dssp             TTCEEEEEECCCSSCCEEEEEEEE-CCSS-CSCCCEEEEECCCCCS------S--EEEEEESSCGGGCEECSSSCEEEEE
T ss_pred             CCcEEEEeeccccCCCeEEEEEEe-CChh-HCCCcccccceecccc------c--eEEecccccccCCcccccccEEEEE
Confidence            999999999865 66899999999 7887 5689999988654321      2  3344445688999999999999999


Q ss_pred             EECCCCeEEEecCCCCeEEEEEeecceEEcCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeeccC
Q 020448          213 TLKPRAQIHQSIPETWNAFVYTIEGEGVFGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQPL  283 (326)
Q Consensus       213 ~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl  283 (326)
                      .|++|+++++++|+++++||||++|+++|+|   ..+.++|++.+.+++.++|+|.  ++++||||+|+||
T Consensus       166 ~l~~g~~~~~~l~~~~~~~lyvi~G~l~i~g---~~l~~gd~~~l~~~~~l~i~A~--~~a~~LL~~g~Pi  231 (231)
T d1tq5a1         166 ALLKDEQSVHQIAAERRVWIQVVKGNVTING---VKASTSDGLAIWDEQAISIHAD--SDSEVLLFDLPPV  231 (231)
T ss_dssp             EECTTCEEEECCCTTCEEEEEEEESEEEETT---EEEETTCEEEEESCSCEEEEES--SSEEEEEEEECCC
T ss_pred             EecCCceEEEcccCCccEEEEEEeeEEEECC---EEccCCCeEEECCCCeEEEEEC--CCCEEEEEEccCC
Confidence            9999999999999999999999999999999   8999999999998899999995  5899999999997

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=3.5e-08  Score=88.47  Aligned_cols=180  Identities=14%  Similarity=0.125  Sum_probs=115.1

Q ss_pred             CCCCCCCCC-CCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCC-CCC
Q 020448           86 VSPPAGFPD-HPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSS-SDK  163 (326)
Q Consensus        86 ~~~~~GF~~-HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~-~~k  163 (326)
                      +.|+.+... |.|.+.|.+-||++|+++-... |+.-.+++||+-++.+|..  |.=.|.++++++.|  ||.-+. ..+
T Consensus        58 l~pG~~~~~~~h~~~~Ee~~~Vl~G~~~~~~~-~~~~~l~~Gd~~~~p~~~~--H~~~N~~~~~~~~l--~v~~~~~~~~  132 (253)
T d1rc6a_          58 LHQNGGNQQGFGGEGIETFLYVISGNITAKAE-GKTFALSEGGYLYCPPGSL--MTFVNAQAEDSQIF--LYKRRYVPVE  132 (253)
T ss_dssp             EEEEEEESSCSCCTTEEEEEEEEESEEEEEET-TEEEEEETTEEEEECTTCC--CEEEECSSSCEEEE--EEEEECCCCT
T ss_pred             ECCCcccCCcccCCCcEEEEEEEECEEEEEEC-CEEEEECCCCEEEECCCCC--EEEEECCCCCEEEE--EEEeccccCC
Confidence            455544443 4445899999999999998764 5677999999999998854  77778777777775  664321 123


Q ss_pred             CCCCCccccCCCccceec---CCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceE
Q 020448          164 MIEPRYQEIPSEEIKRAE---TDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGV  240 (326)
Q Consensus       164 ~~~P~Y~~~~~~~iP~~~---~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~  240 (326)
                      ...|........+++...   ..+..+|.+        .|.....++.+..+.+++|+.....-.....-++||++|++.
T Consensus       133 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--------~p~~~~~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~g~  204 (253)
T d1rc6a_         133 GYAPWLVSGNASELERIHYEGMDDVILLDF--------LPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGV  204 (253)
T ss_dssp             TCCCCCEEEEGGGSCCC-------CEEEEC--------SCCSTTCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEE
T ss_pred             CccceeecccccccccccccccceeEEEEe--------cCccccccEEEEEEEECCCceEeEEEeCCceEEEEEeCCEEE
Confidence            445554443333443332   222344432        234455677788889999987654444456789999999887


Q ss_pred             E--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          241 F--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       241 i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      +  || +...+.+||.+.+..+..=.+.+.+...+...|+.
T Consensus       205 ~~i~~-~~~~~~~GD~i~~~~~~ph~~~~~g~~~~~~~~~~  244 (253)
T d1rc6a_         205 YNLDN-NWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYS  244 (253)
T ss_dssp             EESSS-CEEEEETTCEEEECSSEEEEEEEC----CEEEEEE
T ss_pred             EEECC-EEEEecCCCEEEECCCCCEeeeeCCCCCcEEEEEE
Confidence            7  55 33789999999998775555556543344333333

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.78  E-value=7.8e-08  Score=85.96  Aligned_cols=177  Identities=14%  Similarity=0.115  Sum_probs=119.3

Q ss_pred             CCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCCCCCCC
Q 020448           86 VSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMI  165 (326)
Q Consensus        86 ~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~~~k~~  165 (326)
                      +.|+.  +.|+| +.|.+-||++|+++-... |+.-.+++||.-++.+|  ..|+=.|.++.+++.++.+- .|.. ...
T Consensus        57 ~~pGg--~~~~~-~~E~~~~Vl~G~~~~~~~-g~~~~l~~G~~~~~P~g--~~h~~~n~~~~~~~~~~~~~-~~~~-~~~  128 (245)
T d1sfna_          57 MPAGA--QATES-VYQRFAFVLSGEVDVAVG-GETRTLREYDYVYLPAG--EKHMLTAKTDARVSVFEKPY-QTVE-GVQ  128 (245)
T ss_dssp             ECTTC--EEECC-SSEEEEEEEEEEEEEECS-SCEEEECTTEEEEECTT--CCCEEEEEEEEEEEEEEECC-CCBT-TBC
T ss_pred             ECCCC--CCCCC-CccEEEEEEECEEEEEEC-CEEEEecCCCEEEeCCC--CcEEEEeCCCccEEEEEeec-cccc-ccC
Confidence            34443  34544 679999999999998864 78889999999999987  45666676677888887765 3433 334


Q ss_pred             CCCccccCCCccceec---CCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE-
Q 020448          166 EPRYQEIPSEEIKRAE---TDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF-  241 (326)
Q Consensus       166 ~P~Y~~~~~~~iP~~~---~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i-  241 (326)
                      .|.......++++...   .++..+|.+.        |.....++.+.-+++++|+.....-.....-.+||++|++.+ 
T Consensus       129 ~P~~~~~~~~~~~~~p~~~~~~~~~r~l~--------p~~~~~~~~~~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~~  200 (245)
T d1sfna_         129 APGVYWGNERENPGYPFEGDDHLIARKLL--------PDEPAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYK  200 (245)
T ss_dssp             CCCCEEEETTTCCCEETTSCTTEEEEECS--------CCCTTCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEE
T ss_pred             CCcceecccccccccCCccccceEEEecC--------CcccccceEEEEEEEccCceeeceecCCceEEEEEeCCEEEEE
Confidence            4544332223333332   3445555443        333445667777899999976533333456789999998766 


Q ss_pred             -cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          242 -GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       242 -~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                       +| +...+++||.+.+..+..=.+.+.+++++++|++-
T Consensus       201 i~~-~~~~v~~GD~i~~~~~~~H~~~n~g~~~~~~l~~k  238 (245)
T d1sfna_         201 LEE-NYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLYK  238 (245)
T ss_dssp             ETT-EEEEEETTCEEEECTTCCEEEEEESSSCEEEEEEE
T ss_pred             ECC-EEEEecCCCEEEECCCCCEeeEeCCCCCEEEEEEe
Confidence             55 33789999999999776555666666788887653

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.58  E-value=2.1e-06  Score=77.74  Aligned_cols=182  Identities=14%  Similarity=0.181  Sum_probs=116.5

Q ss_pred             CCCCCC-CCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEecc-CCCCC
Q 020448           86 VSPPAG-FPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINL-SSSDK  163 (326)
Q Consensus        86 ~~~~~G-F~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinL-P~~~k  163 (326)
                      +.|+.| -.+|.|.+.|.+-||++|+++=.- -|..-.|++||.-++.+|.  .|+=.|.++++++++  ||.- ....+
T Consensus        73 v~PGg~s~~p~~~~~~Ee~~yVl~G~~~l~~-~g~~~~L~~Gd~~y~P~g~--~h~~~N~g~~~a~~l--~i~k~y~~~~  147 (273)
T d1sq4a_          73 LAPNGGSDKPEQDPNAEAVLFVVEGELSLTL-QGQVHAMQPGGYAFIPPGA--DYKVRNTTGQHTRFH--WIRKHYQKVD  147 (273)
T ss_dssp             EEEEEEESSCCCCTTEEEEEEEEESCEEEEE-SSCEEEECTTEEEEECTTC--CEEEECCSSSCEEEE--EEEEECCCCT
T ss_pred             ECCCCccCCCCCCCCcEEEEEEEeCEEEEEE-CCEEEEecCCCEEEECCCC--cEeeeecCCCCEEEE--EEEecccccc
Confidence            445544 346778899999999999998764 3677899999999999875  677778877788775  6631 11112


Q ss_pred             CCC-CCccccCCCccceec---CCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecce
Q 020448          164 MIE-PRYQEIPSEEIKRAE---TDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEG  239 (326)
Q Consensus       164 ~~~-P~Y~~~~~~~iP~~~---~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~  239 (326)
                      ..+ |.-......+++...   ..+....+  .    .-.|-....++.+.-+.+++|+.....-.....-++||++|++
T Consensus       148 g~~~p~~~v~~~~dv~p~~~~~~~~~~~~~--r----~~~p~d~~~d~~~~i~~~~PG~~~~~~h~H~~ee~~~vl~G~~  221 (273)
T d1sq4a_         148 GVPLPEAFVTNEQDIQPLVMPDTEGRWSTT--R----FVDMSDMRHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKA  221 (273)
T ss_dssp             TCCCCCCEEEEGGGSCCEECSSGGGCEEEE--C----SSCTTCTTCSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEE
T ss_pred             ccccccccccChhccCcccccCCCceeEEE--E----eeCCcccccceEEEEEEEccCCccccccccccceEEEEEccEE
Confidence            222 211111112222211   11111111  0    1123334566777778999998765322223468999999998


Q ss_pred             EE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          240 VF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       240 ~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      .+  || +...+.+||.+.+..+..=.+.+.+++++++|++-
T Consensus       222 ~~~~~~-~~~~v~~GD~i~~~~~~ph~~~n~g~~p~~yl~~k  262 (273)
T d1sq4a_         222 VYRLNQ-DWVEVEAGDFMWLRAFCPQACYSGGPGRFRYLLYK  262 (273)
T ss_dssp             EEEETT-EEEEEETTCEEEEEESCCEEEECCSSSCEEEEEEE
T ss_pred             EEEECC-EEEEecCCCEEEECCCCCEEeEeCCCCCEEEEEEE
Confidence            76  55 33789999999999776666677767889988874

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.57  E-value=2e-06  Score=76.62  Aligned_cols=177  Identities=13%  Similarity=0.123  Sum_probs=111.8

Q ss_pred             CCCCCCC-CCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEec---cCCC
Q 020448           86 VSPPAGF-PDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWIN---LSSS  161 (326)
Q Consensus        86 ~~~~~GF-~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWin---LP~~  161 (326)
                      +.|+.+. ..|.|.+.|.+-||++|+++=.- -|..-.|++||.-++.+|  +.|+=.|.++++++.|  ||.   .+.+
T Consensus        55 l~pg~~~~~~~~~~~~Ee~~yVl~G~~~~~~-~~~~~~l~~Gd~~~~p~~--~~H~~~N~~~~~~~~l--~v~~~y~~~~  129 (250)
T d1sefa_          55 FHKNGQQTTGFGGDGIQTLVYVIDGRLRVSD-GQETHELEAGGYAYFTPE--MKMYLANAQEADTEVF--LYKKRYQPLA  129 (250)
T ss_dssp             EEEEEEECSCSSBTTEEEEEEEEESEEEEEC-SSCEEEEETTEEEEECTT--SCCEEEESSSSCEEEE--EEEEECCCCT
T ss_pred             EcCCcccCCCCCCCCcEEEEEEEeeEEEEEE-CCEEEEEcCCCEEEEcCC--CcEEEEECCCCCEEEE--EEEEeccccc
Confidence            4455443 44556899999999999996553 266788999999999977  5788889888888776  442   1221


Q ss_pred             CCCCCCCccccCCCcccee---cCCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecc
Q 020448          162 DKMIEPRYQEIPSEEIKRA---ETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGE  238 (326)
Q Consensus       162 ~k~~~P~Y~~~~~~~iP~~---~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~  238 (326)
                        ...|.-......+++..   ..++...+.+.        |.....++.+.-+.+++|+.....--....-++||++|+
T Consensus       130 --~~~p~~~~~~~~~~e~~~~~~~~~~~~~~~~--------p~~~~~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~  199 (250)
T d1sefa_         130 --GHQPYKVVGSIHDQQPEEYEGMTDVLLWSLL--------PKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQ  199 (250)
T ss_dssp             --TCCCCCEEEEGGGSCCEEGGGCTTEEEEECS--------CSSTTCSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECE
T ss_pred             --cccccccccccccccccccCCccccceEEec--------CccccccEEEEEEEECCCCccCccCccCceEEEEEeCCE
Confidence              22232221111122222   12333443332        333445677777899999975322222445899999998


Q ss_pred             eEE--cCcCceeecCccEEEEcCCCeEEEEecC-CCCeEEEEE
Q 020448          239 GVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRS-SKQLRFVLI  278 (326)
Q Consensus       239 ~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~-~~~a~~LL~  278 (326)
                      +.+  |+ +...+.+||++.+..+..=.+.+.+ ++.+++|++
T Consensus       200 ~~~~~~~-~~~~~~~GD~i~~~~~~pH~~~n~G~~~~~~~l~~  241 (250)
T d1sefa_         200 GMYNLDN-EWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYS  241 (250)
T ss_dssp             EEEEETT-EEEEEETTCEEEECTTCCEEEEEECSSSCEEEEEE
T ss_pred             EEEEECC-EEEEecCCCEEEECCCCCEEeEcCCCCCcEEEEEE
Confidence            876  45 3378999999999977655555544 345677665

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=98.34  E-value=1.2e-05  Score=73.83  Aligned_cols=181  Identities=19%  Similarity=0.180  Sum_probs=109.4

Q ss_pred             cCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCCCCC-
Q 020448           85 SVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDK-  163 (326)
Q Consensus        85 ~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~~~k-  163 (326)
                      .+.|+.+.++|.|.+-+-+-||++|+++-.- -|..-.+++||+-++-+|  +.|.=.|.++. .+ +=+|+ .|.... 
T Consensus        48 ~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~~p~~--~~H~~~n~~~~-~~-~l~~~-~p~~~~~  121 (330)
T d1y3ta1          48 SGGKGDAFPLHVHKDTHEGILVLDGKLELTL-DGERYLLISGDYANIPAG--TPHSYRMQSHR-TR-LVSYT-MKGNVAH  121 (330)
T ss_dssp             EECTTCEEEEEECTTCCEEEEEEESCEEEEE-TTEEEEECTTCEEEECTT--CCEEEEECSTT-EE-EEEEE-ETTSSTH
T ss_pred             EECCCCcCCcccCCCceEEEEEeCCEEEEEE-CCEEEEEcCCCEEEeCCC--CeEEEEEcCCC-eE-EEEEE-CCccHHH
Confidence            4667788899999877767799999998873 366788999999888765  68887877543 32 33455 342110 


Q ss_pred             -----------CCCC----------CccccCCC---------------------ccc-----ee-c--------CCCeEE
Q 020448          164 -----------MIEP----------RYQEIPSE---------------------EIK-----RA-E--------TDGVEV  187 (326)
Q Consensus       164 -----------~~~P----------~Y~~~~~~---------------------~iP-----~~-~--------~~g~~~  187 (326)
                                 ...|          ++......                     ..|     .. .        ..+...
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~g~~~  201 (330)
T d1y3ta1         122 LYSVIGNPYDHAEHPPYASEEVSNERFAEAAAVATIVFLDEAKPACSAKLAELTELPDGAVPYVLESGEGDRLLTGDQLH  201 (330)
T ss_dssp             HHHHHSEECSCSSCCSSCCCCCTTCTTGGGTSSCEECCCCCCCSSCSCEECCBCSCCSSSCCEEECTTCSEEEEETTEEE
T ss_pred             hhhhhceecccccCCccccccccccccccccccccccccccccccccccccccccCCccceeeEEEcccCceEecCCceE
Confidence                       0000          00000000                     000     00 0        001112


Q ss_pred             EEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEE
Q 020448          188 RIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSA  265 (326)
Q Consensus       188 rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i  265 (326)
                      |+.+..       -.+...+.+..+.+.+|.....-......-++||++|++++  +|+ ...+++||.+.+..+..=.+
T Consensus       202 ~~~~~~-------~~t~~~~~~~~~~~~~G~~~~~H~H~~~~e~~~vl~G~~~~~v~~~-~~~~~~Gd~~~vP~g~~H~~  273 (330)
T d1y3ta1         202 RIVAAQ-------KNTDGQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWTDGQ-EIQLNPGDFLHVPANTVHSY  273 (330)
T ss_dssp             EEEECG-------GGTTTSCEEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEETTE-EEEECTTCEEEECTTCCEEE
T ss_pred             EEcCCC-------cccCCcEEEEEEEECCCCccCccCcCCccEEEEEEecEEEEEECCE-EEEeCCCCEEEECcCCcEEe
Confidence            222111       11233466777888888765433333445689999998776  452 36799999999998877677


Q ss_pred             EecCCCCeEEEEEee
Q 020448          266 WNRSSKQLRFVLIAG  280 (326)
Q Consensus       266 ~a~~~~~a~~LL~~G  280 (326)
                      .+.+ +++++|++..
T Consensus       274 ~~~~-~~~~~l~~~~  287 (330)
T d1y3ta1         274 RLDS-HYTKMVGVLV  287 (330)
T ss_dssp             EECS-SSEEEEEEEE
T ss_pred             EeCC-CCeEEEEEEC
Confidence            7764 5899888764

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=97.94  E-value=2.8e-05  Score=60.63  Aligned_cols=91  Identities=21%  Similarity=0.273  Sum_probs=75.0

Q ss_pred             eEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEE
Q 020448           61 AVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHS  140 (326)
Q Consensus        61 ~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~Hs  140 (326)
                      ....+++....  .-+...++....+.|++..++|-|.+.+-+.||++|+..-... |....+++||+-+..+|  ..|.
T Consensus        23 ~~~~~l~~~~~--~~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~~~-~~~~~l~~Gd~~~ip~g--~~H~   97 (115)
T d1o4ta_          23 VEMAHLLSKEA--MHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDN-GKDVPIKAGDVCFTDSG--ESHS   97 (115)
T ss_dssp             EEEEECSCTTT--TTTSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEET-TEEEEEETTEEEEECTT--CEEE
T ss_pred             EEEEEecCccc--cCCccEEEEEEEECCCCCcCCEECCCCcEEEEEEECcceEEEc-CeeEEeeccEEEEECCC--CeEE
Confidence            55666666543  3466777888888999999999999998888999999888754 56788999999999987  6899


Q ss_pred             eeeCCCCceeEEEEEe
Q 020448          141 EMPAGEGVQNGLQLWI  156 (326)
Q Consensus       141 E~~~~~~~~~~lQLWi  156 (326)
                      -.|.++.++.+|-|=|
T Consensus        98 ~~N~g~~~~~~l~I~i  113 (115)
T d1o4ta_          98 IENTGNTDLEFLAVII  113 (115)
T ss_dssp             EECCSSSCEEEEEEEE
T ss_pred             EEECCCCCEEEEEEEE
Confidence            9998888999988766

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=97.85  E-value=0.0011  Score=61.10  Aligned_cols=72  Identities=8%  Similarity=0.104  Sum_probs=50.2

Q ss_pred             EEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc--CcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEee
Q 020448          208 MFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAG  280 (326)
Q Consensus       208 ~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G  280 (326)
                      .+..+++.++....-........++||++|++.+.  +.+...+.+||.+.+..|..-.+.+.+ ..+++|++..
T Consensus       250 ~~~~~~~~pg~~~~~~~~~~~~e~~~vleG~~~~~i~~~~~~~l~~GD~~~vP~g~~h~~~~~~-~~~~~~~~~~  323 (348)
T d1juha_         250 STISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIGDYAATELGSGDVAFIPGGVEFKYYSEA-YFSKVLFVSS  323 (348)
T ss_dssp             EEEEECCCCTTSCCCCBCCSSCEEEEEEESCEEEEETTSCCEEECTTCEEEECTTCCEEEEESS-SSEEEEEEEE
T ss_pred             eEEEEEecCCCCCCCcccCCCCEEEEEEeceEEEEeCCcceEEecCCCEEEECCCCcEEEEeCC-CCcEEEEEEc
Confidence            44455666666543333334468999999998763  333357999999999988888887765 4778777764

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.83  E-value=0.00054  Score=64.07  Aligned_cols=208  Identities=20%  Similarity=0.190  Sum_probs=126.8

Q ss_pred             cccCCCCCCCCCCCCCCceEEEEEeeceEE--EecCCCCee--eeeCCcEEEEecCCCeEEEeeeCCCCceeEE------
Q 020448           83 EFSVSPPAGFPDHPHRGFETVTYMLQGGIT--HQDFSGHKG--TIHTGDVQWMTAGRGIVHSEMPAGEGVQNGL------  152 (326)
Q Consensus        83 ~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~--H~DS~Gn~~--~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~l------  152 (326)
                      ...+.|++-..+|-|..-| +.||++|+..  --|.-|...  .|++||+-++-+|.-  |+-.+.. +.++++      
T Consensus        76 ~~~L~pga~~~pH~H~~ae-~~yVl~G~~~vt~Vd~~G~~~~~~l~~GDv~~~P~G~~--H~i~n~~-dg~e~l~vf~~~  151 (372)
T d1j58a_          76 NMRLKPGAIRELHWHKEAE-WAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLP--HSIQALE-EGAEFLLVFDDG  151 (372)
T ss_dssp             EEEECTTCEEEEEEESSCE-EEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCC--EEEEEEE-EEEEEEEEESCT
T ss_pred             EEEECCCcCcCCcccCccc-EEEEEeCEEEEEEEeCCCcEEEEEeccCCEEEECCCCE--EEEEeCC-CCcEEEEEECCC
Confidence            3457788777899998876 7899998754  447777654  499999999999954  6544421 111111      


Q ss_pred             ----------EEEec--------------------------------cCCC--------CCCCCC---CccccCCCccce
Q 020448          153 ----------QLWIN--------------------------------LSSS--------DKMIEP---RYQEIPSEEIKR  179 (326)
Q Consensus       153 ----------QLWin--------------------------------LP~~--------~k~~~P---~Y~~~~~~~iP~  179 (326)
                                +=|+.                                +|..        .+...|   .|..+  ++-| 
T Consensus       152 ~~~~~~~f~~~~~~~~~p~evLa~af~v~~~~~~~i~~~e~~i~~~~~p~~~~~~~~~~~~g~~~~~~~~~l~--~q~P-  228 (372)
T d1j58a_         152 SFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEGPNGEVPYPFTYRLL--EQEP-  228 (372)
T ss_dssp             TCCGGGEEEHHHHHHTSCHHHHHHHHTCCTGGGTTSCSSCCSEECCCCCCCHHHHCCCCTTCCCSSCSEEEGG--GSCC-
T ss_pred             CcccccceeeccccccCCHHHHHHhhCCCHHHHhhccccccccccccCCCcchhhhccCCCCCCCCcceeecc--ccCC-
Confidence                      11211                                0100        000000   01111  1123 


Q ss_pred             ecCCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCc----eeecCcc
Q 020448          180 AETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNS----SAVSAHN  253 (326)
Q Consensus       180 ~~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~----~~l~~~d  253 (326)
                      ....|+.++++...    .-|+  ...+....+.|++|+-...-..+...-+.||++|++++  .+.++    ..+++||
T Consensus       229 ~~~~gG~~~~~d~~----~fp~--~~~is~~~~~l~PG~~~~~H~Hp~a~E~~yvl~G~g~v~v~~~~g~~~t~~l~~GD  302 (372)
T d1j58a_         229 IESEGGKVYIADST----NFKV--SKTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGD  302 (372)
T ss_dssp             EECSSEEEEEESTT----TSTT--CCSCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSC
T ss_pred             cccCCccEEEeccc----cCCc--cCceeEEEEEECCCcccCCCCCCCCcEEEEEEECeEEEEEEcCCCceEEEEecCCc
Confidence            23345667766432    2232  23567778899999987755555556899999999775  22111    4689999


Q ss_pred             EEEEcCCCeEEEEecCCCCeEEEEEeeccCCCceeeeCCcccCcHHHHHHH
Q 020448          254 VLVLSLGDGLSAWNRSSKQLRFVLIAGQPLNEPVVQYGPFVMNSQAEIDQT  304 (326)
Q Consensus       254 ~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl~epi~~~GpFVmnt~~ei~~A  304 (326)
                      .+.+..+..-.+++.++++++||.+--.+.-+-+ ....+...+..+|.++
T Consensus       303 v~~iP~g~~H~i~N~g~e~l~~l~vf~s~~~~~i-~~~~~l~~~P~~vv~~  352 (372)
T d1j58a_         303 VGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADV-SLNQWLAMLPETFVQA  352 (372)
T ss_dssp             EEEECTTCBEEEEECSSSCEEEEEEESSSSCCCE-EHHHHHHTSCHHHHHH
T ss_pred             EEEECCCCeEEEEECCCCCEEEEEEECCCCccee-eHHHHhhhCCHHHHHH
Confidence            9999988776777766788998877666655553 4445566666666554

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=0.00016  Score=65.60  Aligned_cols=196  Identities=16%  Similarity=0.180  Sum_probs=112.5

Q ss_pred             CCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEE--EecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCcee
Q 020448           73 RSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGIT--HQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQN  150 (326)
Q Consensus        73 ~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~--H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~  150 (326)
                      ...-|.+.+.-..+.|+...++|-|.. |-+.||++|+..  ..|  |..-.+++||+-+.-+|  +.|+=.|.+++++.
T Consensus        48 ~~~~~~l~~~~~~l~PG~~~~~H~H~~-~e~~~vl~G~g~~t~~~--~~~~~~~~Gd~~~~P~~--~~H~~~n~g~e~~~  122 (308)
T d2d40a1          48 SSITATLYAGLQLIMPGEVAPSHRHNQ-SALRFIVEGKGAFTAVD--GERTPMNEGDFILTPQW--RWHDHGNPGDEPVI  122 (308)
T ss_dssp             CCSSSSCEEEEEEECTTCEEEEEEESS-CEEEEEEECSSCEEEET--TEEEECCTTCEEEECTT--SCEEEECCSSSCEE
T ss_pred             cccCccceeeeEEECCCCccccccCch-hheEEEEEeeEEEEEec--CEEEEecCCCEEEeCCC--ceEEeEECCCCCEE
Confidence            345666666666778888899999986 456699999753  444  45567999999988755  78998898777776


Q ss_pred             EEEEEeccC--------------CCC--CCCCCCcc--ccCCC------------------------cccee-------c
Q 020448          151 GLQLWINLS--------------SSD--KMIEPRYQ--EIPSE------------------------EIKRA-------E  181 (326)
Q Consensus       151 ~lQLWinLP--------------~~~--k~~~P~Y~--~~~~~------------------------~iP~~-------~  181 (326)
                      .|=+- |.|              ...  +...+...  .....                        .++..       .
T Consensus       123 ~l~~~-d~pl~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  201 (308)
T d2d40a1         123 WLDGL-DLPLVNILGCGFAEDYPEEQQPVTRKEGDYLPRYAANMLPLRHQTGNSSPIFNYRYDRSREVLHDLTRLGDADE  201 (308)
T ss_dssp             EEEEE-CHHHHHHHTCCCEEECC--CCCCCSCTTTHHHHHSSSEECSSCCCCSSCSCCEECHHHHHHHHHHHHTTSCCBT
T ss_pred             EEEEe-ccchhhhcCeeeeccCcccccccccCccchhhhcccccccccccccccCcccccchhhHHHHHHHHHhccCCCC
Confidence            65321 111              000  00000000  00000                        00000       0


Q ss_pred             CCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceE--EcCcCceeecCccEEEEcC
Q 020448          182 TDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGV--FGTVNSSAVSAHNVLVLSL  259 (326)
Q Consensus       182 ~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~--i~g~~~~~l~~~d~~~l~~  259 (326)
                      ..+..++.+....    + -.+..-+.+.-..|++|+....--. ..+..+||++|+..  |+|+. ..+.+||.+.+..
T Consensus       202 ~~g~~v~~~~~~~----~-~~~~~t~~~~~~~l~pG~~~~~h~h-~~~~~~~v~~G~g~~~v~~~~-~~~~~GD~~~vP~  274 (308)
T d2d40a1         202 WDGYKMRYVNPVT----G-GYPMPSMGAFLQLLPKGFASRVART-TDSTIYHVVEGSGQVIIGNET-FSFSAKDIFVVPT  274 (308)
T ss_dssp             TTBEEEEECCTTT----S-SCSSSSCEEEEEEECTTCBCCCBEE-SSCEEEEEEEEEEEEEETTEE-EEEETTCEEEECT
T ss_pred             CCceEEEeecccc----c-cCccceeEEEEEEccCCCccCCccC-ChheEEEEEeCcEEEEECCEE-EEEeCCCEEEeCC
Confidence            0112222211110    0 0122234555567888886543222 23567799999875  56633 6799999999988


Q ss_pred             CCeEEEEecCCCCeEEEEEeeccC
Q 020448          260 GDGLSAWNRSSKQLRFVLIAGQPL  283 (326)
Q Consensus       260 g~~l~i~a~~~~~a~~LL~~G~pl  283 (326)
                      +..-.+++.  +++.++.+.-.|+
T Consensus       275 ~~~h~~~~~--~d~~l~~v~D~p~  296 (308)
T d2d40a1         275 WHGVSFQTT--QDSVLFSFSDRPV  296 (308)
T ss_dssp             TCCEEEEEE--EEEEEEEEESHHH
T ss_pred             CCeEEEEcC--CCeEEEEEcCHHH
Confidence            877778774  4676766654443

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=97.48  E-value=0.00056  Score=51.60  Aligned_cols=77  Identities=12%  Similarity=-0.032  Sum_probs=57.1

Q ss_pred             ccCccEEEEEEECCCCeEEEecC-CCCeEEEEEeecceEEc-CcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          203 TRTPTMFLDFTLKPRAQIHQSIP-ETWNAFVYTIEGEGVFG-TVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       203 ~~~~~~~~di~L~~g~~~~~~~p-~~~~~~lyVl~G~~~i~-g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      ....+.++.++|++|++...... .+..-++||++|++++. |.+...|++||.+.+..+..=.+.+.+++.+.+++|.
T Consensus        18 ~~~~~e~~~~~l~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~~~~~l~~GD~~~~~~~~~H~~~n~~~~~~~~~vi~   96 (99)
T d1y9qa2          18 ADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQWHELQQGEHIRFFSDQPHGYAAVTEKAVFQNIVA   96 (99)
T ss_dssp             TTTTEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEETTEEEEECTTCEEEEECSSSEEEEESSSCEEEEEEEE
T ss_pred             CcCCEEEEEEEEeCCcEeccccccCCcEEEEEEEcCceEEEecceEEEecCCCEEEECCCCeEEEEeCCccCEEEEEEe
Confidence            34567889999999998654332 23368999999998873 2233789999999999887778888766666665654

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=97.41  E-value=0.0002  Score=55.43  Aligned_cols=88  Identities=22%  Similarity=0.279  Sum_probs=67.5

Q ss_pred             CceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeE
Q 020448           59 DGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIV  138 (326)
Q Consensus        59 ~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~  138 (326)
                      .|+..+.+++......   | .+-.+.+.|+..++.|.|...|++ ||++|++.... -|..-.+++||+-|+.+  |..
T Consensus        20 ~G~~~~~l~~~~~~~~---~-~~~~~~i~pG~~~~~H~H~~~e~~-~vl~G~~~~~~-~~~~~~l~~Gd~~~ip~--~~~   91 (114)
T d1vj2a_          20 RGVRKRVLIGLKDAPN---F-VMRLFTVEPGGLIDRHSHPWEHEI-FVLKGKLTVLK-EQGEETVEEGFYIFVEP--NEI   91 (114)
T ss_dssp             EEEEEEEEECTTTCSS---E-EEEEEEEEEEEEEEEECCSSCEEE-EEEESEEEEEC-SSCEEEEETTEEEEECT--TCC
T ss_pred             CCEEEEEEeCCCCCCc---e-EEEEEEECCCCCCCceECCCcEEE-EEEEceeEEEE-eeeeeEEecCeEEEEcC--CCe
Confidence            3677777877654222   3 345566788888999999987765 89999998874 35667899999999997  588


Q ss_pred             EEeeeCCCCceeEEEE
Q 020448          139 HSEMPAGEGVQNGLQL  154 (326)
Q Consensus       139 HsE~~~~~~~~~~lQL  154 (326)
                      |.=.|.+++++.+|=+
T Consensus        92 H~~~n~~~~~~~~l~i  107 (114)
T d1vj2a_          92 HGFRNDTDSEVEFLCL  107 (114)
T ss_dssp             EEEECCSSSCEEEEEE
T ss_pred             EEEEeCCCCCEEEEEE
Confidence            9999888888887544

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=97.37  E-value=0.00068  Score=52.25  Aligned_cols=87  Identities=16%  Similarity=0.313  Sum_probs=64.1

Q ss_pred             CCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCC
Q 020448          183 DGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLG  260 (326)
Q Consensus       183 ~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g  260 (326)
                      .|...|+++|...   +|     ...+..+++++|+.+..-... ..-++||++|++.+  ++ +...+.+||.+.+..+
T Consensus        20 ~G~~~~~l~~~~~---~~-----~~~~~~~~i~pG~~~~~H~H~-~~e~~~vl~G~~~~~~~~-~~~~l~~Gd~~~ip~~   89 (114)
T d1vj2a_          20 RGVRKRVLIGLKD---AP-----NFVMRLFTVEPGGLIDRHSHP-WEHEIFVLKGKLTVLKEQ-GEETVEEGFYIFVEPN   89 (114)
T ss_dssp             EEEEEEEEECTTT---CS-----SEEEEEEEEEEEEEEEEECCS-SCEEEEEEESEEEEECSS-CEEEEETTEEEEECTT
T ss_pred             CCEEEEEEeCCCC---CC-----ceEEEEEEECCCCCCCceECC-CcEEEEEEEceeEEEEee-eeeEEecCeEEEEcCC
Confidence            4677888988631   21     345666788999888754443 34678999998776  44 3378999999999988


Q ss_pred             CeEEEEecCCCCeEEEEEe
Q 020448          261 DGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       261 ~~l~i~a~~~~~a~~LL~~  279 (326)
                      ..=.+.+.++++++||.+-
T Consensus        90 ~~H~~~n~~~~~~~~l~ii  108 (114)
T d1vj2a_          90 EIHGFRNDTDSEVEFLCLI  108 (114)
T ss_dssp             CCEEEECCSSSCEEEEEEE
T ss_pred             CeEEEEeCCCCCEEEEEEE
Confidence            8888888767788888774

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.17  E-value=0.0021  Score=49.23  Aligned_cols=74  Identities=14%  Similarity=0.160  Sum_probs=56.2

Q ss_pred             ccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEee
Q 020448          206 PTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAG  280 (326)
Q Consensus       206 ~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G  280 (326)
                      .+.+..+.|++|+....-.. ....++||++|++.+  +|.+...+.+||.+.+..+..=.+.+.++++++||++..
T Consensus        25 ~~~v~~~~l~pG~~~p~H~H-~~~e~~~Vl~G~~~~~v~~~e~~~v~~Gd~i~ip~~~~H~~~n~~~e~l~~l~v~~  100 (108)
T d2b8ma1          25 HVQINHIVLPRGEQMPKHYS-NSYVHLIIIKGEMTLTLEDQEPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVVKA  100 (108)
T ss_dssp             SCEEEEEEEETTCBCCCEEC-SSCEEEEEEESEEEEEETTSCCEEEETTCEEEECTTCEEEEECCSSSEEEEEEEEC
T ss_pred             CEEEEEEEECCCCcChhhcc-cccEEEEEEeeeEEEEEecccEEEeecceEeeccCCceEEEEcCCCCcEEEEEEEC
Confidence            46778889999987543333 345789999999887  453335799999999998888888887667788887754

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=97.14  E-value=0.0026  Score=47.52  Aligned_cols=75  Identities=16%  Similarity=0.250  Sum_probs=56.7

Q ss_pred             cEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448          207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       207 ~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      +.+.-+.+++|+....-...+...++||++|++.+  +| +...+++||.+.+..+..=.+.+.+++++.+|.+.+.|
T Consensus        28 ~~~~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~~~-~~~~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l~v~~P~  104 (105)
T d1v70a_          28 MLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGE-EEALLAPGMAAFAPAGAPHGVRNESASPALLLVVTAPR  104 (105)
T ss_dssp             EEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETT-EEEEECTTCEEEECTTSCEEEECCSSSCEEEEEEEESC
T ss_pred             EEEEEEEECCCCCCcceECCCCeEEEEEEeeEEEEEEee-eEEEecceEEEEeCCCCEEEeEECCCCCEEEEEEECCC
Confidence            44555688999987755555557899999999876  44 23789999999998877767777666788888776543

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.09  E-value=0.0019  Score=49.38  Aligned_cols=92  Identities=8%  Similarity=0.125  Sum_probs=67.4

Q ss_pred             CCceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCe
Q 020448           58 GDGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGI  137 (326)
Q Consensus        58 G~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI  137 (326)
                      .++..+++++.....       .+-++.+.|+...+.|-|. .+.+-|||+|++.-...-+..-.+++||+-++.+|  +
T Consensus        12 ~~~~~~~~l~~~~~~-------~v~~~~l~pG~~~p~H~H~-~~e~~~Vl~G~~~~~v~~~e~~~v~~Gd~i~ip~~--~   81 (108)
T d2b8ma1          12 AKTKVVEKLVNTEHV-------QINHIVLPRGEQMPKHYSN-SYVHLIIIKGEMTLTLEDQEPHNYKEGNIVYVPFN--V   81 (108)
T ss_dssp             CCSCEEEEEEECSSC-------EEEEEEEETTCBCCCEECS-SCEEEEEEESEEEEEETTSCCEEEETTCEEEECTT--C
T ss_pred             CCceEEEEEEcCCCE-------EEEEEEECCCCcChhhccc-ccEEEEEEeeeEEEEEecccEEEeecceEeeccCC--c
Confidence            345667777766542       3555667888889999997 56667999999888653333457999999999976  7


Q ss_pred             EEEeeeCCCCceeEEEEEeccCCC
Q 020448          138 VHSEMPAGEGVQNGLQLWINLSSS  161 (326)
Q Consensus       138 ~HsE~~~~~~~~~~lQLWinLP~~  161 (326)
                      .|+=.|.++..+.+|-  |..|.-
T Consensus        82 ~H~~~n~~~e~l~~l~--v~~P~p  103 (108)
T d2b8ma1          82 KMLIQNINSDILEFFV--VKAPHP  103 (108)
T ss_dssp             EEEEECCSSSEEEEEE--EECSCG
T ss_pred             eEEEEcCCCCcEEEEE--EECCCC
Confidence            8999998888777764  334543

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=97.06  E-value=0.00063  Score=51.14  Aligned_cols=72  Identities=18%  Similarity=0.222  Sum_probs=57.1

Q ss_pred             cccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccC
Q 020448           83 EFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLS  159 (326)
Q Consensus        83 ~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP  159 (326)
                      -..+.|+...++|-|.+.+-+.||++|++.-... |....+++||+-++-+|  ..|.-.|.+++++..  |||-.|
T Consensus        32 ~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~~-~~~~~l~~Gd~~~~p~~--~~H~~~n~g~~~~~~--l~v~~P  103 (105)
T d1v70a_          32 LYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG-EEEALLAPGMAAFAPAG--APHGVRNESASPALL--LVVTAP  103 (105)
T ss_dssp             EEEECTTCEEEEECCSSCEEEEEEEESCEEEEET-TEEEEECTTCEEEECTT--SCEEEECCSSSCEEE--EEEEES
T ss_pred             EEEECCCCCCcceECCCCeEEEEEEeeEEEEEEe-eeEEEecceEEEEeCCC--CEEEeEECCCCCEEE--EEEECC
Confidence            3456788889999999999999999999887643 55678999999988765  689999987777765  555345

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=96.90  E-value=0.0016  Score=49.00  Aligned_cols=91  Identities=10%  Similarity=-0.011  Sum_probs=65.0

Q ss_pred             CceEEEEecCCCCCCCCCceEEeecccCCCCCCC--CCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCC
Q 020448           59 DGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGF--PDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRG  136 (326)
Q Consensus        59 ~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF--~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsG  136 (326)
                      ..++++.++|......+..+++-    +.|++..  +.|.|.. +=+=||++|+++-.= -|..-.|++||+-++.+  |
T Consensus         6 ~~~~~~~l~p~~~~~~~e~~~~~----l~pg~~~~~~~H~h~~-~E~~~Vl~G~~~~~~-~~~~~~l~~GD~~~~~~--~   77 (99)
T d1y9qa2           6 LNMKIHTLFPYAADTGLEIFEIT----LLDHHQQMSSPHALGV-IEYIHVLEGIMKVFF-DEQWHELQQGEHIRFFS--D   77 (99)
T ss_dssp             TTEEEEEEEEEETTTTEEEEEEE----ECTTCEEEECCCSTTC-EEEEEEEESCEEEEE-TTEEEEECTTCEEEEEC--S
T ss_pred             CCeEEEEEecCCCcCCEEEEEEE----EeCCcEeccccccCCc-EEEEEEEcCceEEEe-cceEEEecCCCEEEECC--C
Confidence            36888888887666667766653    5565544  4455555 555699999977632 23457899999999999  4


Q ss_pred             eEEEeeeCCCCceeEEEEEeccC
Q 020448          137 IVHSEMPAGEGVQNGLQLWINLS  159 (326)
Q Consensus       137 I~HsE~~~~~~~~~~lQLWinLP  159 (326)
                      ..|+=.|.+++++  +-+||.-|
T Consensus        78 ~~H~~~n~~~~~~--~~~vi~~P   98 (99)
T d1y9qa2          78 QPHGYAAVTEKAV--FQNIVAYP   98 (99)
T ss_dssp             SSEEEEESSSCEE--EEEEEECC
T ss_pred             CeEEEEeCCccCE--EEEEEeCC
Confidence            7899999877664  77888666

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=96.73  E-value=0.0062  Score=46.66  Aligned_cols=70  Identities=24%  Similarity=0.376  Sum_probs=52.9

Q ss_pred             EEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEE
Q 020448          208 MFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLI  278 (326)
Q Consensus       208 ~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~  278 (326)
                      .+..+.++||+....-...+..-++||++|++.+  +| +...+++||.+.+..+..=.+.+.++++++||.+
T Consensus        40 ~~~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~~~~-~~~~l~~Gd~~~ip~g~~H~~~N~g~~~~~~l~I  111 (115)
T d1o4ta_          40 LFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNG-KDVPIKAGDVCFTDSGESHSIENTGNTDLEFLAV  111 (115)
T ss_dssp             EEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEETT-EEEEEETTEEEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             EEEEEEECCCCCcCCEECCCCcEEEEEEECcceEEEcC-eeEEeeccEEEEECCCCeEEEEECCCCCEEEEEE
Confidence            3556789999987655544555788999999877  44 2378999999999988776777766677877654

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=96.58  E-value=0.037  Score=50.80  Aligned_cols=73  Identities=14%  Similarity=0.123  Sum_probs=52.7

Q ss_pred             CCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCC-CCce
Q 020448           74 SLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAG-EGVQ  149 (326)
Q Consensus        74 ~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~-~~~~  149 (326)
                      ...|-+...--.+.|+.--+.|-|. .+.+.||++|+-...---|.+-.+++||+-.+-+|  ..|+-.|.+ +.++
T Consensus        80 ~~t~~l~~~~q~l~PGe~~~~HrH~-~~~~~~vi~G~g~~t~v~ge~~~~~~GD~~~~P~~--~~H~h~n~~~~~~~  153 (355)
T d3bu7a1          80 AACGWLFSGIQTMKAGERAGAHRHA-ASALRFIMEGSGAYTIVDGHKVELGANDFVLTPNG--TWHEHGILESGTEC  153 (355)
T ss_dssp             CSBTTBEEEEEEECTTCBCCCEEES-SCEEEEEEECSCEEEEETTEEEEECTTCEEEECTT--CCEEEEECTTCCCE
T ss_pred             CcCchhhhheEeeCCCCcCcccccc-cceeEEEEECCcEEEEECCEEEEeeCCCEEEeCCC--ceEeeecCCCCCcE
Confidence            4555555555556777778899995 88999999998544322356788999999988864  689888864 4443

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=96.45  E-value=0.03  Score=51.22  Aligned_cols=197  Identities=12%  Similarity=0.153  Sum_probs=108.2

Q ss_pred             CCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEE
Q 020448           74 SLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQ  153 (326)
Q Consensus        74 ~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQ  153 (326)
                      ..-|-++..--.+.|+.--++|-|. .+.+.||++|+-...=--|.+..+++||+-.+-+|.  .|+=.|.+++++..|=
T Consensus        82 ~~t~~l~~~~~~l~PGe~~~~H~H~-~~~~~~vi~G~g~~t~v~g~~~~~~~GD~~~~P~~~--~H~~~n~~d~~~~~l~  158 (351)
T d2phda1          82 YISPTMWAGIQYLGPRETAPEHRHS-QNAFRFVVEGEGVWTVVNGDPVRMSRGDLLLTPGWC--FHGHMNDTDQPMAWID  158 (351)
T ss_dssp             CSSSSCEEEEEEECTTCEEEEEEES-SCEEEEEEECEEEEEEETTEEEEEETTCEEEECTTC--CEEEEECSSSCEEEEE
T ss_pred             ccCchhhhheEEECCCCcCCccccc-cceeEEEEECCcEEEEECCEEEEEeCCCEEEeCCCc--eEEEEEcCCCCEEEEE
Confidence            3444455444456777778899995 788999999985432222566789999999888874  6766777666654332


Q ss_pred             EEeccCCCCCC---------------CCCCcccc-----CCCcccee---------------------------------
Q 020448          154 LWINLSSSDKM---------------IEPRYQEI-----PSEEIKRA---------------------------------  180 (326)
Q Consensus       154 LWinLP~~~k~---------------~~P~Y~~~-----~~~~iP~~---------------------------------  180 (326)
                      + +|+|--...               ..|.+...     .....|..                                 
T Consensus       159 ~-~d~pl~~~l~~~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~sp~~~yp~~~~~~al~~~~~~~~~~~  237 (351)
T d2phda1         159 G-LDIPFSQQMDVGFFEFGSDRVTDYATPNFSRGERLWCHPGLRPLSGLQNTVASPIGAYRWEFTDRALTEQLLLEDEGQ  237 (351)
T ss_dssp             E-ECHHHHHHTTCCCEEECCC--CCCCCCSSCHHHHHHCSTTEEEGGGCSCCSSCSCSEECHHHHHHHHHHHHHHHHTTC
T ss_pred             e-ecCchhhhcccccccccccccccccCCccchhhhhccccccCcccccccccCCCcccCchHHHHhhhhhhhhcccccc
Confidence            1 233310000               00100000     00000000                                 


Q ss_pred             ----cCCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccE
Q 020448          181 ----ETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNV  254 (326)
Q Consensus       181 ----~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~  254 (326)
                          ...+..++.+.....   +++  ..-+...-..|++|.....-.. ......||++|+.++  +++ ...+.+||.
T Consensus       238 ~~~~~~g~~~l~yvnp~tg---~~~--~~t~~~~~~~l~pG~~~~~hrh-~~~~v~~vi~G~g~~~i~~~-~~~~~~gDv  310 (351)
T d2phda1         238 PATVAPGHAAIRYVNPTTG---GDV--MPTLRCEFHRLRAGTETATRNE-VGSTVFQVFEGAGAVVMNGE-TTKLEKGDM  310 (351)
T ss_dssp             SCSSBTTEEEEEEBCTTTS---SBS--BTTBEEEEEEECTTCBCCCEEE-SSCEEEEEEESCEEEEETTE-EEEECTTCE
T ss_pred             cccccCcceeEEEeccccC---CCc--CCcceEEEEEecCCCcCCCccc-cCcEEEEEEeCcEEEEECCE-EEEEcCCCE
Confidence                001122332222110   111  1123344446787775432222 234677899987654  663 267899999


Q ss_pred             EEEcCCCeEEEEecCCCCeEEEEEeeccC
Q 020448          255 LVLSLGDGLSAWNRSSKQLRFVLIAGQPL  283 (326)
Q Consensus       255 ~~l~~g~~l~i~a~~~~~a~~LL~~G~pl  283 (326)
                      +.+......++++.  +++.++-++=+|+
T Consensus       311 f~vP~~~~h~~~n~--~~~~Lf~~~D~P~  337 (351)
T d2phda1         311 FVVPSWVPWSLQAE--TQFDLFRFSDAPI  337 (351)
T ss_dssp             EEECTTCCEEEEES--SCEEEEEEESHHH
T ss_pred             EEeCCCCcEEEecC--CCeEEEEECCHHH
Confidence            99988888888884  5677766664554

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.39  E-value=0.0041  Score=54.39  Aligned_cols=86  Identities=14%  Similarity=0.166  Sum_probs=62.8

Q ss_pred             eEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEec-CCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCC
Q 020448          185 VEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSI-PETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGD  261 (326)
Q Consensus       185 ~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~-p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~  261 (326)
                      +.+++++....        -.....+.+.+.+|....-+. ..+..-|+||++|++++  +| +...|.+||.+.+..+.
T Consensus        34 ~~~~~L~sp~~--------Ga~f~~~~v~l~pg~~~~~~~~~~~~Ee~~yVl~G~~~~~~~~-~~~~l~~Gd~~~~p~~~  104 (250)
T d1sefa_          34 VDISILGSPKL--------GATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQ-ETHELEAGGYAYFTPEM  104 (250)
T ss_dssp             EEEEECSCGGG--------TCSSEEEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEECSS-CEEEEETTEEEEECTTS
T ss_pred             EEEEEEcCccc--------CCcEEEEEEEEcCCcccCCCCCCCCcEEEEEEEeeEEEEEECC-EEEEEcCCCEEEEcCCC
Confidence            56777654421        234567788999988765333 23446899999999877  55 23779999999999887


Q ss_pred             eEEEEecCCCCeEEEEEe
Q 020448          262 GLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       262 ~l~i~a~~~~~a~~LL~~  279 (326)
                      .-.+.+.+++.++||++.
T Consensus       105 ~H~~~N~~~~~~~~l~v~  122 (250)
T d1sefa_         105 KMYLANAQEADTEVFLYK  122 (250)
T ss_dssp             CCEEEESSSSCEEEEEEE
T ss_pred             cEEEEECCCCCEEEEEEE
Confidence            777777777889999984

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.34  E-value=0.029  Score=42.48  Aligned_cols=72  Identities=15%  Similarity=0.235  Sum_probs=55.0

Q ss_pred             cEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448          207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       207 ~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      +.+.-+.+++|++...-..+ +..++||++|++.+  +| +...+.+||.+.+..+..=.++|.  ++++++++--+|
T Consensus        37 ~~i~~~~~~~G~~~~~H~h~-~~~~~~vl~G~~~~~~~~-~~~~l~~Gd~~~ip~~~~H~~~a~--~~~~~l~~vi~p  110 (112)
T d1yhfa1          37 LGITVFSLDKGQEIGRHSSP-GDAMVTILSGLAEITIDQ-ETYRVAEGQTIVMPAGIPHALYAV--EAFQMLLVVVKP  110 (112)
T ss_dssp             EEEEEEEECTTCEEEEECCS-SEEEEEEEESEEEEEETT-EEEEEETTCEEEECTTSCEEEEES--SCEEEEEEEECS
T ss_pred             cEEEEEEECCCCCcceEECC-CCEEEEEEeCEEEEEEcc-EEEEecCCEEEEcCCCCeEEeEEC--CCcEEEEEEECC
Confidence            34455688999987654443 47889999999877  44 237899999999998887788885  578888887665

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=96.28  E-value=0.0047  Score=49.35  Aligned_cols=90  Identities=16%  Similarity=0.114  Sum_probs=62.9

Q ss_pred             ceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEE
Q 020448           60 GAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVH  139 (326)
Q Consensus        60 g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~H  139 (326)
                      .+.++.++....  .-.. +.+-...+.|+..-++|-|..-| +.||++|++...--.+....++|||+-|+.+|  +.|
T Consensus        19 ~v~~~~L~~~~~--~~~~-~~~~~vtf~PG~~~~~H~H~~~q-~~~Vl~G~~~~~~~g~~~~~~~~Gd~v~ippg--~~H   92 (134)
T d2f4pa1          19 NVWVKMLVTDEN--GVFN-TQVYDVVFEPGARTHWHSHPGGQ-ILIVTRGKGFYQERGKPARILKKGDVVEIPPN--VVH   92 (134)
T ss_dssp             CEEEEEEECCTT--CSSS-CEEEEEEECTTCEECSEECTTCE-EEEEEEEEEEEEETTSCCEEEETTCEEEECTT--CCE
T ss_pred             eEEEeeccCCCC--CCce-eEEEEEEECCCCcCccccCCCCE-EEEEEeCEEEEEECCcceEEEcCCCeEEECCC--Cce
Confidence            366666665432  1111 23345567888888999998755 67999999988665566679999999999998  667


Q ss_pred             EeeeCCCCceeEEEEE
Q 020448          140 SEMPAGEGVQNGLQLW  155 (326)
Q Consensus       140 sE~~~~~~~~~~lQLW  155 (326)
                      .-.+..+.++..|-|=
T Consensus        93 ~~~a~~~~~~~~lai~  108 (134)
T d2f4pa1          93 WHGAAPDEELVHIGIS  108 (134)
T ss_dssp             EEEEBTTBCEEEEEEE
T ss_pred             ECccCCCCcEEEEEEE
Confidence            6556556666666643

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.011  Score=51.52  Aligned_cols=86  Identities=17%  Similarity=0.161  Sum_probs=62.9

Q ss_pred             eEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecC-CCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCC
Q 020448          185 VEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIP-ETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGD  261 (326)
Q Consensus       185 ~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p-~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~  261 (326)
                      ..+++++...        .-.....+.++|++|+....... .+...++||++|++++  +++ ...+.+||.+.+..+.
T Consensus        37 ~~~~~l~sp~--------~g~~f~~~~v~l~pG~~~~~~~h~~~~Ee~~~Vl~G~~~~~~~~~-~~~l~~Gd~~~~p~~~  107 (253)
T d1rc6a_          37 CDATILSTPK--------LGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGK-TFALSEGGYLYCPPGS  107 (253)
T ss_dssp             EEEEECCCGG--------GTCSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEETTE-EEEEETTEEEEECTTC
T ss_pred             eeEEEEeCcc--------cCCceEEEEEEECCCcccCCcccCCCcEEEEEEEECEEEEEECCE-EEEECCCCEEEECCCC
Confidence            5666665432        23466778889999886654332 3446899999999886  442 3679999999999887


Q ss_pred             eEEEEecCCCCeEEEEEe
Q 020448          262 GLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       262 ~l~i~a~~~~~a~~LL~~  279 (326)
                      .-.+.+.+++.+++|++-
T Consensus       108 ~H~~~N~~~~~~~~l~v~  125 (253)
T d1rc6a_         108 LMTFVNAQAEDSQIFLYK  125 (253)
T ss_dssp             CCEEEECSSSCEEEEEEE
T ss_pred             CEEEEECCCCCEEEEEEE
Confidence            778877777889999985

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=96.06  E-value=0.034  Score=45.69  Aligned_cols=101  Identities=14%  Similarity=0.184  Sum_probs=63.1

Q ss_pred             eecCCCeEEEEEeCCCCCCcCc-ccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc-----CcCceeecCc
Q 020448          179 RAETDGVEVRIIAGESMGVRSP-VYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG-----TVNSSAVSAH  252 (326)
Q Consensus       179 ~~~~~g~~~rViaG~~~g~~sp-~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~-----g~~~~~l~~~  252 (326)
                      ..+.+++++|++---  +..++ ++...++.+..+.+++|+-.. +-...-.-++||++|++.++     +.....+++|
T Consensus        17 ~~~~~~G~i~~~~~~--~~~~~~l~~l~~~~v~~~~i~p~~~~~-Ph~~~a~ei~yV~~G~g~v~~v~~~~~~~~~l~~G   93 (170)
T d1uija1          17 LFENQNGRIRLLQRF--NKRSPQLENLRDYRIVQFQSKPNTILL-PHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPG   93 (170)
T ss_dssp             EEECSSEEEEEECCH--HHHCGGGGGGTTCEEEEEEECTTEEEE-EEEESEEEEEEEEESCEEEEEECSSCEEEEEECTT
T ss_pred             ccccCCCcEEEEecc--cccchhhcchhheEEEEEEecCCcccc-cccCCCCEEEEEEEEEEEEEEEeCCCcEEEEecCC
Confidence            345666788887431  12233 333456778888999986432 33233458999999998874     2122578999


Q ss_pred             cEEEEcCCCeEEEEecCCCCeEEEEEeecc
Q 020448          253 NVLVLSLGDGLSAWNRSSKQLRFVLIAGQP  282 (326)
Q Consensus       253 d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p  282 (326)
                      |++.+..|....+.+.++...-++++...|
T Consensus        94 Dv~~vP~G~~h~~~n~~~~~~l~iv~~~~~  123 (170)
T d1uija1          94 DAQRIPAGTTYYLVNPHDHQNLKMIWLAIP  123 (170)
T ss_dssp             EEEEECTTCEEEEEECCSSCCEEEEEEEEE
T ss_pred             cEEEECCCCeEEEEEcCCCCcEEEEEecCC
Confidence            999999887777776533233333343334

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.73  E-value=0.015  Score=51.68  Aligned_cols=73  Identities=16%  Similarity=0.195  Sum_probs=56.8

Q ss_pred             ccEEEEEEECCCCeEEEec-CCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          206 PTMFLDFTLKPRAQIHQSI-PETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       206 ~~~~~di~L~~g~~~~~~~-p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      ....+-+++++|+...-+. ..+...++||++|++++  +| +...|.+||.+.+..+..-.+.+.+++.++|+++-
T Consensus        65 ~F~~y~vev~PGg~s~~p~~~~~~Ee~~yVl~G~~~l~~~g-~~~~L~~Gd~~y~P~g~~h~~~N~g~~~a~~l~i~  140 (273)
T d1sq4a_          65 TFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQG-QVHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWIR  140 (273)
T ss_dssp             SCEEEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEESS-CEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEE
T ss_pred             ceEEEEEEECCCCccCCCCCCCCcEEEEEEEeCEEEEEECC-EEEEecCCCEEEECCCCcEeeeecCCCCEEEEEEE
Confidence            4567778898887654333 23446899999999887  44 33789999999999888888887777899999985

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=95.71  E-value=0.31  Score=39.70  Aligned_cols=95  Identities=13%  Similarity=0.127  Sum_probs=66.3

Q ss_pred             cCCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc-----CcC--ceeecCcc
Q 020448          181 ETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG-----TVN--SSAVSAHN  253 (326)
Q Consensus       181 ~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~-----g~~--~~~l~~~d  253 (326)
                      ..+|+.++++...    +=|.-....+.+..+.|++|+-..--..+.-.-++||++|++.++     +..  ...|++||
T Consensus        20 ~~~gG~i~~~~~~----~fP~L~~~~~s~~~~~l~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~g~~~~~~~l~~Gd   95 (174)
T d1fxza2          20 NPQAGSVTTATSL----DFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGR   95 (174)
T ss_dssp             ETTTEEEEEECTT----TSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTC
T ss_pred             cCCCeEEEEecHH----HhhhhhhcCceEEEeeecCCCEeCCccCCCCCEEEEEEecceEEEEecCCCceeEEEEEcCCc
Confidence            4566788877543    335444557888889999998665333344568999999999884     211  13589999


Q ss_pred             EEEEcCCCeEEEEecCCCCeEEEEEee
Q 020448          254 VLVLSLGDGLSAWNRSSKQLRFVLIAG  280 (326)
Q Consensus       254 ~~~l~~g~~l~i~a~~~~~a~~LL~~G  280 (326)
                      +..+..|-...+.+. +++.+++.|.-
T Consensus        96 v~vvP~G~~h~~~n~-~~~~~~v~~~~  121 (174)
T d1fxza2          96 VLIVPQNFVVAARSQ-SDNFEYVSFKT  121 (174)
T ss_dssp             EEEECTTCEEEEEEC-STTEEEEEEES
T ss_pred             EEEECCCCEEEEEeC-CCCeEEEEEEc
Confidence            999998877777775 45777776653

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=95.68  E-value=0.14  Score=40.39  Aligned_cols=100  Identities=15%  Similarity=0.144  Sum_probs=70.4

Q ss_pred             eEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCe
Q 020448          185 VEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDG  262 (326)
Q Consensus       185 ~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~  262 (326)
                      +.++.+.....       ...++.+..+++++|++...-..+. .-.+||++|++.+  .|.....+.+||.+.+..+..
T Consensus        20 v~~~~L~~~~~-------~~~~~~~~~vtf~PG~~~~~H~H~~-~q~~~Vl~G~~~~~~~g~~~~~~~~Gd~v~ippg~~   91 (134)
T d2f4pa1          20 VWVKMLVTDEN-------GVFNTQVYDVVFEPGARTHWHSHPG-GQILIVTRGKGFYQERGKPARILKKGDVVEIPPNVV   91 (134)
T ss_dssp             EEEEEEECCTT-------CSSSCEEEEEEECTTCEECSEECTT-CEEEEEEEEEEEEEETTSCCEEEETTCEEEECTTCC
T ss_pred             EEEeeccCCCC-------CCceeEEEEEEECCCCcCccccCCC-CEEEEEEeCEEEEEECCcceEEEcCCCeEEECCCCc
Confidence            56666654321       2235778899999999877555433 4689999999876  232336799999999987654


Q ss_pred             EEEEecCCCCeEEEEEeeccCCCceeeeCC
Q 020448          263 LSAWNRSSKQLRFVLIAGQPLNEPVVQYGP  292 (326)
Q Consensus       263 l~i~a~~~~~a~~LL~~G~pl~epi~~~Gp  292 (326)
                      =...|.+++...+|.+...+-.+++.+.-|
T Consensus        92 H~~~a~~~~~~~~lai~~~~~~~~v~W~E~  121 (134)
T d2f4pa1          92 HWHGAAPDEELVHIGISTQVHLGPAEWLGS  121 (134)
T ss_dssp             EEEEEBTTBCEEEEEEECCGGGCCCEECCC
T ss_pred             eECccCCCCcEEEEEEEecCCCCceEECcc
Confidence            445565567788888888877777766554

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=95.41  E-value=0.14  Score=43.04  Aligned_cols=103  Identities=15%  Similarity=0.184  Sum_probs=63.3

Q ss_pred             eecCCCeEEEEEeCCCCCCcCc-ccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc----Cc-CceeecCc
Q 020448          179 RAETDGVEVRIIAGESMGVRSP-VYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG----TV-NSSAVSAH  252 (326)
Q Consensus       179 ~~~~~g~~~rViaG~~~g~~sp-~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~----g~-~~~~l~~~  252 (326)
                      ....+++.++++-. + +..++ ++....+.+..+.+++++-. .+-..+-...+||++|++.++    ++ ....|++|
T Consensus        13 ~~~~~~G~i~~~~~-~-~~~~~~l~~l~~~~v~~~~i~p~~l~-~Ph~~~a~ev~yV~~G~g~~~~v~~~~~~~~~l~~G   89 (203)
T d1uika1          13 LFKNQYGHVRVLQR-F-NKRSQQLQNLRDYRILEFNSKPNTLL-LPHHADADYLIVILNGTAILTLVNNDDRDSYNLQSG   89 (203)
T ss_dssp             EEECSSEEEEEECC-T-TSSCGGGGGGTTCEEEEEEECSSEEE-EEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETT
T ss_pred             ceECCCCeEEEecc-c-CccchhhccccceEEEEEEecCCCcc-ccccCCCcEEEEEEEEEEEEEEEeCCCeEEEEecCC
Confidence            44566678888732 2 22332 44445677778889998743 232334458999999998773    11 12569999


Q ss_pred             cEEEEcCCCeEEEEecCCCCeEEEEEeeccCC
Q 020448          253 NVLVLSLGDGLSAWNRSSKQLRFVLIAGQPLN  284 (326)
Q Consensus       253 d~~~l~~g~~l~i~a~~~~~a~~LL~~G~pl~  284 (326)
                      |++.+..|....+.+.++...-++++-+.|.+
T Consensus        90 Dv~~iP~G~~~~~~N~~~~e~l~iv~~~~~~n  121 (203)
T d1uika1          90 DALRVPAGTTYYVVNPDNDENLRMITLAIPVN  121 (203)
T ss_dssp             EEEEECTTCEEEEEECCSSCCEEEEEEEEESS
T ss_pred             CEEEECCCCeEEEEECCCCccEEEEEEecCCC
Confidence            99999988776666643322223333344433

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.36  E-value=0.017  Score=43.90  Aligned_cols=67  Identities=19%  Similarity=0.196  Sum_probs=51.6

Q ss_pred             ccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEe
Q 020448           84 FSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWI  156 (326)
Q Consensus        84 ~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWi  156 (326)
                      +.+.++..++.|-|.+ +.+.|+++|+++-.=. |....+++||+-|+.||  +.|+=.+.  +++.++=+=+
T Consensus        42 ~~~~~G~~~~~H~h~~-~~~~~vl~G~~~~~~~-~~~~~l~~Gd~~~ip~~--~~H~~~a~--~~~~~l~~vi  108 (112)
T d1yhfa1          42 FSLDKGQEIGRHSSPG-DAMVTILSGLAEITID-QETYRVAEGQTIVMPAG--IPHALYAV--EAFQMLLVVV  108 (112)
T ss_dssp             EEECTTCEEEEECCSS-EEEEEEEESEEEEEET-TEEEEEETTCEEEECTT--SCEEEEES--SCEEEEEEEE
T ss_pred             EEECCCCCcceEECCC-CEEEEEEeCEEEEEEc-cEEEEecCCEEEEcCCC--CeEEeEEC--CCcEEEEEEE
Confidence            4567888899999987 6677999999987643 56678999999999875  78887775  3456665544

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.22  E-value=0.051  Score=47.04  Aligned_cols=87  Identities=21%  Similarity=0.222  Sum_probs=61.3

Q ss_pred             CceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeE
Q 020448           59 DGAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIV  138 (326)
Q Consensus        59 ~g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~  138 (326)
                      ++...+-+.|......    .-+.-..+.|+..++.|-|+..|-+-|||+|+....= -|..-.+++||+-||.|+  +.
T Consensus       149 ~~~~~r~l~p~~~~~~----~~~~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~~i-~~~~~~v~~GD~i~~~~~--~~  221 (245)
T d1sfna_         149 DHLIARKLLPDEPAFD----FMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL-EENYYPVTAGDIIWMGAH--CP  221 (245)
T ss_dssp             TTEEEEECSCCCTTCS----EEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE-TTEEEEEETTCEEEECTT--CC
T ss_pred             cceEEEecCCcccccc----eEEEEEEEccCceeeceecCCceEEEEEeCCEEEEEE-CCEEEEecCCCEEEECCC--CC
Confidence            4555555554332111    2233345688888898876667777799999988754 245578999999999987  77


Q ss_pred             EEeeeCCCCceeEE
Q 020448          139 HSEMPAGEGVQNGL  152 (326)
Q Consensus       139 HsE~~~~~~~~~~l  152 (326)
                      |.=.|...+++++|
T Consensus       222 H~~~n~g~~~~~~l  235 (245)
T d1sfna_         222 QWYGALGRNWSKYL  235 (245)
T ss_dssp             EEEEEESSSCEEEE
T ss_pred             EeeEeCCCCCEEEE
Confidence            99999887888765

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=95.10  E-value=0.24  Score=40.58  Aligned_cols=98  Identities=11%  Similarity=0.193  Sum_probs=62.9

Q ss_pred             ceecCCCeEEEEEeCCCCCCcCc-ccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc----C-cCceeecC
Q 020448          178 KRAETDGVEVRIIAGESMGVRSP-VYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG----T-VNSSAVSA  251 (326)
Q Consensus       178 P~~~~~g~~~rViaG~~~g~~sp-~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~----g-~~~~~l~~  251 (326)
                      +..+.+++.+|++---  +.+++ +.....+.+..+++++|+-+.-- ..+-...+||++|++.++    + .....|++
T Consensus        13 ~~~~~~~G~i~~~~~~--~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph-~~~a~ev~yV~~G~g~v~~v~~~~~~~~~l~~   89 (178)
T d1dgwa_          13 TLFKNQHGSLRLLQRF--NEDTEKLENLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQ   89 (178)
T ss_dssp             EEEEETTEEEEEECCT--TSSCGGGGGGTTEEEEEEEECTTEEEEEE-EESSEEEEEEEESEEEEEEEETTEEEEEEEET
T ss_pred             cceECCCCcEEEeccc--CCcchhccCccceEEEEEEecCCcccccc-cCCCCEEEEEEEeEEEEEEecCCceEEEEecC
Confidence            3456667888887321  22333 33335677788899999865422 234468999999998874    2 11256999


Q ss_pred             ccEEEEcCCCeEEEEecCC-CCeEEEEE
Q 020448          252 HNVLVLSLGDGLSAWNRSS-KQLRFVLI  278 (326)
Q Consensus       252 ~d~~~l~~g~~l~i~a~~~-~~a~~LL~  278 (326)
                      ||++.+..|....+.+.++ ++..++.+
T Consensus        90 GDv~~iP~G~~h~~~N~~~~e~l~i~~~  117 (178)
T d1dgwa_          90 GDAIKIQAGTPFYLINPDNNQNLRILKF  117 (178)
T ss_dssp             TEEEEECTTCCEEEEECCSSSCEEEEEE
T ss_pred             CCEEEECCCCeEEEEECCCCCCEEEEEE
Confidence            9999999887777765432 34444444

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.52  E-value=0.088  Score=42.44  Aligned_cols=77  Identities=14%  Similarity=0.315  Sum_probs=55.9

Q ss_pred             CccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcC--------ceeecCccEEEEcCCCeEEEEecCC-CCe
Q 020448          205 TPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVN--------SSAVSAHNVLVLSLGDGLSAWNRSS-KQL  273 (326)
Q Consensus       205 ~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~--------~~~l~~~d~~~l~~g~~l~i~a~~~-~~a  273 (326)
                      ..+.++..+|.+|+..-.-.. ...-++||++|++.+  ++.+        ...+++||.+.+..+..=.+.+.++ +++
T Consensus        39 ~~i~v~~~~l~PG~~~~~H~H-~~~e~~~Vl~G~g~~~i~~~~~~~~~~~~~~~l~~Gd~~~iP~~~~H~~~N~g~~E~l  117 (160)
T d1lr5a_          39 KEVEVWLQTISPGQRTPIHRH-SCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDL  117 (160)
T ss_dssp             SSEEEEEEEECTTCBCCEEEE-SSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCCSSSCE
T ss_pred             cEEEEEEEEECCCccccceec-cccEEEEEEeeeEEEEECCccccccccceEEEecCCCEEEeCCCCcEEEEECCCCCCE
Confidence            457888889999986543322 235789999998765  4421        1468999999999887777776553 679


Q ss_pred             EEEEEeecc
Q 020448          274 RFVLIAGQP  282 (326)
Q Consensus       274 ~~LL~~G~p  282 (326)
                      ++|++...|
T Consensus       118 ~~l~i~~~~  126 (160)
T d1lr5a_         118 QVLVIISRP  126 (160)
T ss_dssp             EEEEEEESS
T ss_pred             EEEEEECCC
Confidence            988877765

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=94.26  E-value=0.26  Score=43.73  Aligned_cols=75  Identities=9%  Similarity=0.017  Sum_probs=55.8

Q ss_pred             ccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          203 TRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       203 ~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      +.....++.+.+.+|+....-......-++||++|++++  +| +...+++||.+.+..+..=.+.+.+ +++++|++.
T Consensus        38 t~~~~~~~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~-~~~~l~~Gd~~~~p~~~~H~~~n~~-~~~~~l~~~  114 (330)
T d1y3ta1          38 TGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDG-ERYLLISGDYANIPAGTPHSYRMQS-HRTRLVSYT  114 (330)
T ss_dssp             HTSSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEETT-EEEEECTTCEEEECTTCCEEEEECS-TTEEEEEEE
T ss_pred             CCCcEEEEEEEECCCCcCCcccCCCceEEEEEeCCEEEEEECC-EEEEEcCCCEEEeCCCCeEEEEEcC-CCeEEEEEE
Confidence            445678888999999977654444445789999999877  34 2378999999999987766777765 467777764

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=94.25  E-value=0.16  Score=46.69  Aligned_cols=90  Identities=16%  Similarity=0.132  Sum_probs=64.0

Q ss_pred             CCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc-----CcC-ceeecCccEEE
Q 020448          183 DGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG-----TVN-SSAVSAHNVLV  256 (326)
Q Consensus       183 ~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~-----g~~-~~~l~~~d~~~  256 (326)
                      +|+++|-+.-      .-+++.+.+...+++|++|+-.+.--... .-+.||++|++.|.     |+. ...|++||++.
T Consensus        54 ~gg~~r~~~~------~~lp~~~~~a~~~~~L~pga~~~pH~H~~-ae~~yVl~G~~~vt~Vd~~G~~~~~~l~~GDv~~  126 (372)
T d1j58a_          54 KGGYAREVTV------RELPISENLASVNMRLKPGAIRELHWHKE-AEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWY  126 (372)
T ss_dssp             TTEEEEEECT------TTCTTCSSCEEEEEEECTTCEEEEEEESS-CEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred             CCCeeEEeeh------hhChhhhhhhheEEEECCCcCcCCcccCc-ccEEEEEeCEEEEEEEeCCCcEEEEEeccCCEEE
Confidence            5567776532      22445567899999999999877544332 36999999999774     211 12499999999


Q ss_pred             EcCCCeEEEEecCCCCeEEEEEee
Q 020448          257 LSLGDGLSAWNRSSKQLRFVLIAG  280 (326)
Q Consensus       257 l~~g~~l~i~a~~~~~a~~LL~~G  280 (326)
                      +..|....+.+. ++++++|++--
T Consensus       127 ~P~G~~H~i~n~-~dg~e~l~vf~  149 (372)
T d1j58a_         127 FPSGLPHSIQAL-EEGAEFLLVFD  149 (372)
T ss_dssp             ECTTCCEEEEEE-EEEEEEEEEES
T ss_pred             ECCCCEEEEEeC-CCCcEEEEEEC
Confidence            998887778776 46788887653

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=94.02  E-value=0.13  Score=39.62  Aligned_cols=72  Identities=8%  Similarity=0.076  Sum_probs=46.4

Q ss_pred             cEEEEEEECCCCeEEEecCC--CCeEEEEEeecceEEc--Cc---CceeecCccEEEEcCCCeEEEEec-CCCCeEEEEE
Q 020448          207 TMFLDFTLKPRAQIHQSIPE--TWNAFVYTIEGEGVFG--TV---NSSAVSAHNVLVLSLGDGLSAWNR-SSKQLRFVLI  278 (326)
Q Consensus       207 ~~~~di~L~~g~~~~~~~p~--~~~~~lyVl~G~~~i~--g~---~~~~l~~~d~~~l~~g~~l~i~a~-~~~~a~~LL~  278 (326)
                      +.-+.+.+.++..-+.....  ...-|+||++|++++.  +.   +...+++||.+.+..+..=.+.+. +++.+++|.+
T Consensus        41 ~~~~~i~v~~~~~~~~~~~~~H~~eE~~yVl~G~~~~~~g~~~~~~~~~l~~GDsi~~~~~~pH~~~n~~g~~~a~~l~V  120 (122)
T d2bnma2          41 LVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFTAAKGTGSAKLIAV  120 (122)
T ss_dssp             CEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEECTTCCEEEEESTTSCCEEEEEE
T ss_pred             cEeEEEEEeCCCCCccccCCCcccEEEEEEEEEEEEEEEecccCCEEEEEccCcEEEeCCCCCEEEEcCCCCccEEEEEE
Confidence            44556677766543322222  2358999999999883  11   125799999999997665556654 3456777765

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.86  E-value=0.053  Score=43.82  Aligned_cols=69  Identities=19%  Similarity=0.066  Sum_probs=50.6

Q ss_pred             eecccCCCCCCCCCCCCCCceEEEEEeeceE--EEecCC------CCeeeeeCCcEEEEecCCCeEEEeeeCCC-CceeE
Q 020448           81 LDEFSVSPPAGFPDHPHRGFETVTYMLQGGI--THQDFS------GHKGTIHTGDVQWMTAGRGIVHSEMPAGE-GVQNG  151 (326)
Q Consensus        81 lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l--~H~DS~------Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~-~~~~~  151 (326)
                      +-...+.|+...+.|-|.+ |-+-||++|+.  ...|..      ...-.+++||+-++-+|  +.|+-.|.++ +++++
T Consensus        43 v~~~~l~PG~~~~~H~H~~-~e~~~Vl~G~g~~~i~~~~~~~~~~~~~~~l~~Gd~~~iP~~--~~H~~~N~g~~E~l~~  119 (160)
T d1lr5a_          43 VWLQTISPGQRTPIHRHSC-EEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVN--DPHQVWNSDEHEDLQV  119 (160)
T ss_dssp             EEEEEECTTCBCCEEEESS-CEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECTT--CCEEEECCCSSSCEEE
T ss_pred             EEEEEECCCccccceeccc-cEEEEEEeeeEEEEECCccccccccceEEEecCCCEEEeCCC--CcEEEEECCCCCCEEE
Confidence            3344578888899997765 55789999874  444422      23457999999999998  6899999864 67776


Q ss_pred             E
Q 020448          152 L  152 (326)
Q Consensus       152 l  152 (326)
                      |
T Consensus       120 l  120 (160)
T d1lr5a_         120 L  120 (160)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=93.53  E-value=0.35  Score=39.68  Aligned_cols=105  Identities=13%  Similarity=0.099  Sum_probs=68.7

Q ss_pred             ceecCCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEcCc-------------
Q 020448          178 KRAETDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFGTV-------------  244 (326)
Q Consensus       178 P~~~~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~g~-------------  244 (326)
                      |....++++++.+...    +-|.--...+.+..+.|++++=..--..+.-..++||++|.+.++-.             
T Consensus        17 p~~~n~~G~~~~~~~~----~~p~L~~~~v~~~~~~l~p~~~~~Ph~h~~A~~i~~V~~G~g~v~~v~~~~~~~~~~~~~   92 (185)
T d1uika2          17 PIYSNKLGKLFEITPE----KNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIELVGIKEQQQRQQQEE   92 (185)
T ss_dssp             CSEESSSEEEEEECTT----TCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC-----------
T ss_pred             CceeCCCCeEEEeChh----hChhhhhcCchhheeecCCCceeeeeecCCCCEEEEEEeeEEEEEEEccCccchhhcccc
Confidence            4555555777777543    34533334788888999998855422223445899999999877411             


Q ss_pred             -------CceeecCccEEEEcCCCeEEEEecCCCCeEEEEEeecc-CCCcee
Q 020448          245 -------NSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAGQP-LNEPVV  288 (326)
Q Consensus       245 -------~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G~p-l~epi~  288 (326)
                             -...|++||++++..|....+.+.  ++.+++++.... -+++..
T Consensus        93 ~~~~~~~~~~~l~~GDv~viP~G~~~~~~n~--~d~~~v~~~~~~~~~~~~f  142 (185)
T d1uika2          93 QPLEVRKYRAELSEQDIFVIPAGYPVVVNAT--SDLNFFAFGINAENNQRNF  142 (185)
T ss_dssp             -CBCCEEEEEEECTTCEEEECTTCCEEEEES--SSEEEEEEEETCTTCCEEE
T ss_pred             ccCcceeEEEEecCCcEEEECCCCEEEEEcC--CCccEEEEEEcCCCCcccc
Confidence                   013589999999998887777774  467777776543 334443

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.46  E-value=0.12  Score=39.96  Aligned_cols=67  Identities=13%  Similarity=0.144  Sum_probs=48.2

Q ss_pred             cEEEEEEECCCCeEEEecCCCCeEEEEEeecceEE--cCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVF--GTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       207 ~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i--~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      +...-..+++|+ +.+  .....-++||++|++++  +| +...+.+||.+.+..+...++++.  ++++++++-
T Consensus        54 ~~~~~~~~~~g~-~~~--~~~~~E~~~vl~G~~~~~~~g-~~~~l~~Gd~~~~p~g~~h~~~~~--~~~~~~~v~  122 (128)
T d2pyta1          54 MAAGFMQWDNAF-FPW--TLNYDEIDMVLEGELHVRHEG-ETMIAKAGDVMFIPKGSSIEFGTP--TSVRFLYVA  122 (128)
T ss_dssp             SEEEEEEEEEEE-EEE--ECSSEEEEEEEEEEEEEEETT-EEEEEETTCEEEECTTCEEEEEEE--EEEEEEEEE
T ss_pred             eEEEEEEECCCc-cce--eCCccEEEEEEEeEEEEEECC-EEEEecCCCEEEECCCCEEEEEeC--CCEEEEEEE
Confidence            444445667764 333  34567899999999887  34 236799999999999988888874  467776665

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=92.80  E-value=0.44  Score=38.79  Aligned_cols=94  Identities=11%  Similarity=0.094  Sum_probs=62.9

Q ss_pred             CCCeEEEEEeCCCCCCcCcccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc-----CcC--ceeecCccE
Q 020448          182 TDGVEVRIIAGESMGVRSPVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG-----TVN--SSAVSAHNV  254 (326)
Q Consensus       182 ~~g~~~rViaG~~~g~~sp~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~-----g~~--~~~l~~~d~  254 (326)
                      .++++++.+...    +=|+-....+....+.|++|+-..--..+.-.-++||++|++++.     +..  ...|++||+
T Consensus        26 ~~gG~i~~~~~~----~fP~L~~lgls~~~v~L~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~~~~~~~~~l~~Gdv  101 (173)
T d1od5a2          26 PKAGRISTLNSL----TLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQL  101 (173)
T ss_dssp             TTTEEEEEESTT----TCTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCE
T ss_pred             CCCeEEEEecHH----HhhhhhhccceEEEEEEcCCcEecCccCCCCcEEEEEEecceEEEEEeCCCceEEeEEecCCcE
Confidence            456777766432    335444457888899999998665333344568999999999884     211  135899999


Q ss_pred             EEEcCCCeEEEEecCCCCeEEEEEee
Q 020448          255 LVLSLGDGLSAWNRSSKQLRFVLIAG  280 (326)
Q Consensus       255 ~~l~~g~~l~i~a~~~~~a~~LL~~G  280 (326)
                      ..+..|-.....+. +++.+++.+.-
T Consensus       102 ~~iP~G~~h~~~n~-~~~~~~v~~~~  126 (173)
T d1od5a2         102 LVVPQNFVVAEQGG-EQGLEYVVFKT  126 (173)
T ss_dssp             EEECTTCEEEEEEE-EEEEEEEEEES
T ss_pred             EEECCCCEEEEEcC-CCceEEEEeec
Confidence            99998876555554 34566665543

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=92.77  E-value=0.78  Score=38.21  Aligned_cols=80  Identities=18%  Similarity=0.138  Sum_probs=56.5

Q ss_pred             cccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc--Cc----C---ceeecCccEEEEcCCCeEEEEecCC
Q 020448          200 PVYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG--TV----N---SSAVSAHNVLVLSLGDGLSAWNRSS  270 (326)
Q Consensus       200 p~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~--g~----~---~~~l~~~d~~~l~~g~~l~i~a~~~  270 (326)
                      |.-....+.+..+.|.+|+-..--..+...-.+||++|+++++  +.    +   ...|++||+..+..|-.--..+.++
T Consensus        65 P~Ln~lglS~~rv~l~pgg~~~PH~Hp~A~Ei~yV~~G~~~v~~v~~~~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~g~  144 (201)
T d2et1a1          65 PGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGK  144 (201)
T ss_dssp             GGGTTSSCEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEEECCGGGTTCEEEEEECTTCEEEECTTCCEEEEECSS
T ss_pred             ccccccceeEEEEEECCCCCcCCcccCCCCEEEEEEcceEEEEEEeccCCCceeEEEEecCCCEEEECCCCeEEEEEcCC
Confidence            4444557899999999999876555556678999999999863  11    1   1468999999998776544455545


Q ss_pred             CCeEEEEEe
Q 020448          271 KQLRFVLIA  279 (326)
Q Consensus       271 ~~a~~LL~~  279 (326)
                      +++.++.+-
T Consensus       145 ~~a~~i~~f  153 (201)
T d2et1a1         145 TEAYMVVSF  153 (201)
T ss_dssp             SCEEEEEEE
T ss_pred             CCEEEEEEe
Confidence            666666543

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=92.14  E-value=1.4  Score=33.33  Aligned_cols=83  Identities=20%  Similarity=0.232  Sum_probs=53.8

Q ss_pred             eEEEEecCCCCCCCCCceEEeecccCCCCC--C-CCCCCCCCceEEEEEeeceEEEe--cCC-CCeeeeeCCcEEEEecC
Q 020448           61 AVVRRAIGRGDLRSLDPFLMLDEFSVSPPA--G-FPDHPHRGFETVTYMLQGGITHQ--DFS-GHKGTIHTGDVQWMTAG  134 (326)
Q Consensus        61 ~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~--G-F~~HPHrG~EtvTyvl~G~l~H~--DS~-Gn~~~i~~GdvQwMtAG  134 (326)
                      ...+.+-.......+.||++-    +.++.  . ...|.|.+-|. .|||+|+++-.  |.. |-.-.++|||.-.+.++
T Consensus        27 y~y~~L~~~~~~~~~~~~~i~----v~~~~~~~~~~~~~H~~eE~-~yVl~G~~~~~~g~~~~~~~~~l~~GDsi~~~~~  101 (122)
T d2bnma2          27 YVYNCLVRTKRAPSLVPLVVD----VLTDNPDDAKFNSGHAGNEF-LFVLEGEIHMKWGDKENPKEALLPTGASMFVEEH  101 (122)
T ss_dssp             EEEEECCCCTTSTTCEEEEEE----ECCCCGGGCCCCCCCSSCEE-EEEEESCEEEEESCTTSCEEEEECTTCEEEECTT
T ss_pred             EEEEeccCCcCCCccEeEEEE----EeCCCCCccccCCCcccEEE-EEEEEEEEEEEEecccCCEEEEEccCcEEEeCCC
Confidence            444445444455688999874    22211  1 23456777555 69999998764  332 34568999999999976


Q ss_pred             CCeEEEeeeCC-CCcee
Q 020448          135 RGIVHSEMPAG-EGVQN  150 (326)
Q Consensus       135 sGI~HsE~~~~-~~~~~  150 (326)
                        +-|.=.|.+ ++++.
T Consensus       102 --~pH~~~n~~g~~~a~  116 (122)
T d2bnma2         102 --VPHAFTAAKGTGSAK  116 (122)
T ss_dssp             --CCEEEEESTTSCCEE
T ss_pred             --CCEEEEcCCCCccEE
Confidence              579999874 45544

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=90.96  E-value=0.8  Score=36.73  Aligned_cols=73  Identities=11%  Similarity=0.079  Sum_probs=52.0

Q ss_pred             ccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc-----CcC--------ceeecCccEEEEcCCCeEEEEecCCCC
Q 020448          206 PTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG-----TVN--------SSAVSAHNVLVLSLGDGLSAWNRSSKQ  272 (326)
Q Consensus       206 ~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~-----g~~--------~~~l~~~d~~~l~~g~~l~i~a~~~~~  272 (326)
                      ++.+..++|++|+=..--..+.-..++||++|.+.+.     |..        ...|++||+..+..|-...+.+.  ++
T Consensus        19 ~~~v~~~~l~p~~~~~PH~h~~A~~i~~V~~G~g~v~~v~~~g~~~~~~~~~~~~~l~~Gdv~vvP~G~~~~~~n~--~~   96 (162)
T d2phla2          19 NVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKAT--SN   96 (162)
T ss_dssp             TEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEECTTCCEEEEES--SS
T ss_pred             CeEEEEEEECCCcEeCCccCCCCCEEEEEEEeeeEEEEEecCCccccccceeeEeeecCCcEEEECCCCEEEEEeC--CC
Confidence            6788889999988554222234458999999998774     211        12589999999998887777774  46


Q ss_pred             eEEEEEee
Q 020448          273 LRFVLIAG  280 (326)
Q Consensus       273 a~~LL~~G  280 (326)
                      .+++.+.-
T Consensus        97 ~~~v~~~~  104 (162)
T d2phla2          97 VNFTGFGI  104 (162)
T ss_dssp             EEEEEEEE
T ss_pred             ceEEEEEe
Confidence            77777653

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=90.55  E-value=0.14  Score=43.09  Aligned_cols=66  Identities=18%  Similarity=0.332  Sum_probs=50.2

Q ss_pred             cCCCCCCCCCCCCCCceEEEEEeeceEEE--ecC--CCCe---eeeeCCcEEEEecCCCeEEEeeeCCCCceeEE
Q 020448           85 SVSPPAGFPDHPHRGFETVTYMLQGGITH--QDF--SGHK---GTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGL  152 (326)
Q Consensus        85 ~~~~~~GF~~HPHrG~EtvTyvl~G~l~H--~DS--~Gn~---~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~l  152 (326)
                      .+.|+.-.++|-|.+-+-+.||++|+++-  -++  .|++   ..|++||+-+.-.|  ..|...|..+++...+
T Consensus        78 ~l~pgg~~~PH~Hp~A~Ei~yV~~G~~~v~~v~~~~~~~~~~~~~l~~GDv~vvP~G--~~H~~~N~g~~~a~~i  150 (201)
T d2et1a1          78 DFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRG--LMHFQFNVGKTEAYMV  150 (201)
T ss_dssp             EECTTCEEEEEECTTCCEEEEEEESCEEEEEECCGGGTTCEEEEEECTTCEEEECTT--CCEEEEECSSSCEEEE
T ss_pred             EECCCCCcCCcccCCCCEEEEEEcceEEEEEEeccCCCceeEEEEecCCCEEEECCC--CeEEEEEcCCCCEEEE
Confidence            35677778999999988899999998753  222  2443   57999999999976  7999999876665443

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=90.35  E-value=3.7  Score=37.72  Aligned_cols=63  Identities=14%  Similarity=0.169  Sum_probs=44.6

Q ss_pred             cEEEEEEECCCCeEEEecCC-CCeEEEEEeecceEEcCc--C--ceeecCccEEEEcCCCeEEEEecC
Q 020448          207 TMFLDFTLKPRAQIHQSIPE-TWNAFVYTIEGEGVFGTV--N--SSAVSAHNVLVLSLGDGLSAWNRS  269 (326)
Q Consensus       207 ~~~~di~L~~g~~~~~~~p~-~~~~~lyVl~G~~~i~g~--~--~~~l~~~d~~~l~~g~~l~i~a~~  269 (326)
                      ..+..++++++......+.+ +.-..+.|++|+++|...  +  ...+.+|+.+.+..+..++|++.+
T Consensus       357 F~v~~~~l~~~~~~~~~~~~~~~~~Illv~~G~~~i~~~~~~~~~~~l~~G~~~fIpa~~~~~i~~~~  424 (440)
T d1pmia_         357 FSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQITGDDSTKQKIDTGYVFFVAPGSSIELTADS  424 (440)
T ss_dssp             CEEEEEECCTTTCCEEEECCCSSCEEEEEEESEEEEEETTCGGGCEEEETTCEEEECTTCCEEEEECS
T ss_pred             eEEEEEEECCCCCceeeecCCCCcEEEEEEcCEEEEEecCCCccEEEeCCceEEEEcCCceEEEEeec
Confidence            46667788776655544443 334678999999998521  1  257899999999877788888753

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=88.86  E-value=0.39  Score=39.10  Aligned_cols=66  Identities=17%  Similarity=0.232  Sum_probs=49.5

Q ss_pred             CCCCCCCCCCCCCCceEEEEEeece--EEEecCCCCee---eeeCCcEEEEecCCCeEEEeeeCCCCceeEEEE
Q 020448           86 VSPPAGFPDHPHRGFETVTYMLQGG--ITHQDFSGHKG---TIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQL  154 (326)
Q Consensus        86 ~~~~~GF~~HPHrG~EtvTyvl~G~--l~H~DS~Gn~~---~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQL  154 (326)
                      +.|++=+.+|-|..-.-+.||++|+  +.--|+.|++.   .|++|||-++-+|  ..|...+.. +..+.+-+
T Consensus        49 l~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~g~~~~~~~l~~Gdv~vvP~G--~~h~~~n~~-~~~~~v~~  119 (174)
T d1fxza2          49 LRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQN--FVVAARSQS-DNFEYVSF  119 (174)
T ss_dssp             ECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTT--CEEEEEECS-TTEEEEEE
T ss_pred             ecCCCEeCCccCCCCCEEEEEEecceEEEEecCCCceeEEEEEcCCcEEEECCC--CEEEEEeCC-CCeEEEEE
Confidence            5666667889987778889999876  55567888753   5999999999999  568888854 33444433

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.77  E-value=0.5  Score=38.98  Aligned_cols=72  Identities=18%  Similarity=0.190  Sum_probs=51.9

Q ss_pred             CCCCCCceEEEEEeece--EEEecCCCCe--eeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEeccCCCCCCCCCCc
Q 020448           94 DHPHRGFETVTYMLQGG--ITHQDFSGHK--GTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWINLSSSDKMIEPRY  169 (326)
Q Consensus        94 ~HPHrG~EtvTyvl~G~--l~H~DS~Gn~--~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWinLP~~~k~~~P~Y  169 (326)
                      .|+|.+.+=+-|+++|+  +.=+|--|+.  -.+++||+-.+-+|  ..|.-.|.+++++.++=+|- .++     ...|
T Consensus        90 ~H~h~~~~E~~~vl~G~g~~~l~~~~~~~~~~~v~~Gd~v~iP~g--~~H~~~N~Gde~L~~l~v~~-~~~-----~~dy  161 (190)
T d1x82a_          90 FHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPY--WAHRTVNIGDEPFIFLAIYP-ADA-----GHDY  161 (190)
T ss_dssp             BCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTT--CEEEEEECSSSCEEEEEEEE-TTC-----CCBC
T ss_pred             ECCCCCCeEEEEEEEeEEEEEEeeccCceEEEEecCCcEEEEecc--eeEEeEECCCCCEEEEEEEC-CCc-----CCcc
Confidence            57777777788999986  4445554553  46999999888875  78999999888897777663 222     3467


Q ss_pred             cccC
Q 020448          170 QEIP  173 (326)
Q Consensus       170 ~~~~  173 (326)
                      ..+.
T Consensus       162 ~~i~  165 (190)
T d1x82a_         162 GTIA  165 (190)
T ss_dssp             HHHH
T ss_pred             hhhe
Confidence            6654

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=88.74  E-value=1.5  Score=38.35  Aligned_cols=71  Identities=8%  Similarity=0.025  Sum_probs=49.1

Q ss_pred             cEEEEEEECCCCeEEEecCCCCeEEEEEeecceE---EcCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEe
Q 020448          207 TMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGV---FGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIA  279 (326)
Q Consensus       207 ~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~---i~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~  279 (326)
                      +...-..|++|+....-... .....||++|++.   +++ +...+++||++.+..+..=.+.+.+++++.+|.+.
T Consensus        54 l~~~~~~l~PG~~~~~H~H~-~~e~~~vl~G~g~~t~~~~-~~~~~~~Gd~~~~P~~~~H~~~n~g~e~~~~l~~~  127 (308)
T d2d40a1          54 LYAGLQLIMPGEVAPSHRHN-QSALRFIVEGKGAFTAVDG-ERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGL  127 (308)
T ss_dssp             CEEEEEEECTTCEEEEEEES-SCEEEEEEECSSCEEEETT-EEEECCTTCEEEECTTSCEEEECCSSSCEEEEEEE
T ss_pred             ceeeeEEECCCCccccccCc-hhheEEEEEeeEEEEEecC-EEEEecCCCEEEeCCCceEEeEECCCCCEEEEEEe
Confidence            33333468999876544333 3577899999864   344 33678999999999877767777666677777654

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=87.96  E-value=0.1  Score=41.40  Aligned_cols=88  Identities=10%  Similarity=0.087  Sum_probs=56.6

Q ss_pred             ceEEEEecCCCCCCCCCceEEeecccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCC-CeeeeeCCcEEEEecCCCeE
Q 020448           60 GAVVRRAIGRGDLRSLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSG-HKGTIHTGDVQWMTAGRGIV  138 (326)
Q Consensus        60 g~~v~r~~~~~~~~~~dPfl~lD~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~G-n~~~i~~GdvQwMtAGsGI~  138 (326)
                      |+..+.+...+.   -+.+.++=  ++.++..+|.|-|.+-|. +|||+|++...+-.. ....+.+|+--+-.||  ..
T Consensus        29 G~~~k~L~~d~~---tg~~~~l~--r~~~G~~~p~H~H~~~e~-~~VL~G~l~~~~g~~~~g~~~~~g~y~~~Pag--~~  100 (144)
T d2o1qa1          29 GIRWKLLHVSPE---MGSWTAIF--DCPAGSSFAAHVHVGPGE-YFLTKGKMDVRGGKAAGGDTAIAPGYGYESAN--AR  100 (144)
T ss_dssp             CCEEEEEEEETT---TTEEEEEE--EECTTEEECCEEESSCEE-EEEEEEEEEETTCGGGTSEEEESSEEEEECTT--CE
T ss_pred             CeEEEEeeeCCC---CCcEEEEE--EeCCCcCcCCCccccCEE-EEEEEEEEEecCCCcCCCceEeCCceeEcCCC--Ce
Confidence            455554433332   35555542  345677789999998887 699999998876432 3357889997777775  68


Q ss_pred             EEeeeCCCCceeEEEEEec
Q 020448          139 HSEMPAGEGVQNGLQLWIN  157 (326)
Q Consensus       139 HsE~~~~~~~~~~lQLWin  157 (326)
                      |.+.-..+ .+ -+|+++.
T Consensus       101 H~~~~~~e-~~-~~~~~~~  117 (144)
T d2o1qa1         101 HDKTEFPV-AS-EFYMSFL  117 (144)
T ss_dssp             ESCCEEEE-EE-EEEEEEE
T ss_pred             EccccCCC-CE-EEEEEEE
Confidence            97642222 22 3567764

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=86.98  E-value=1.1  Score=39.85  Aligned_cols=71  Identities=13%  Similarity=0.029  Sum_probs=51.0

Q ss_pred             cccCCCCCCCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecCCCeEEEeeeCCCCceeEEEEEe
Q 020448           83 EFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAGRGIVHSEMPAGEGVQNGLQLWI  156 (326)
Q Consensus        83 ~~~~~~~~GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAGsGI~HsE~~~~~~~~~~lQLWi  156 (326)
                      ...+.++....+|-|+.-+.+-||++|++.-.-.-+....+++||+-+.-||  +.|+=.|.+. ....+-+..
T Consensus       253 ~~~~~pg~~~~~~~~~~~~e~~~vleG~~~~~i~~~~~~~l~~GD~~~vP~g--~~h~~~~~~~-~~~~~~~~~  323 (348)
T d1juha_         253 SMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIGDYAATELGSGDVAFIPGG--VEFKYYSEAY-FSKVLFVSS  323 (348)
T ss_dssp             EECCCCTTSCCCCBCCSSCEEEEEEESCEEEEETTSCCEEECTTCEEEECTT--CCEEEEESSS-SEEEEEEEE
T ss_pred             EEEecCCCCCCCcccCCCCEEEEEEeceEEEEeCCcceEEecCCCEEEECCC--CcEEEEeCCC-CcEEEEEEc
Confidence            3445677778888888889999999999876432234467999999999996  5566566643 346665544

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=85.99  E-value=2.3  Score=34.98  Aligned_cols=99  Identities=11%  Similarity=0.113  Sum_probs=61.8

Q ss_pred             ceecCCCeEEEEEeCCCCCCcCc-ccccCccEEEEEEECCCCeEEEecCCCCeEEEEEeecceEEc----CcCc------
Q 020448          178 KRAETDGVEVRIIAGESMGVRSP-VYTRTPTMFLDFTLKPRAQIHQSIPETWNAFVYTIEGEGVFG----TVNS------  246 (326)
Q Consensus       178 P~~~~~g~~~rViaG~~~g~~sp-~~~~~~~~~~di~L~~g~~~~~~~p~~~~~~lyVl~G~~~i~----g~~~------  246 (326)
                      +..+.+++.++++-.-  ..+++ ++.-.+..+..+.+++++=+ .|--.+-...+||++|++.++    ++..      
T Consensus        14 ~~~~~e~G~i~~l~~f--~~~~~~l~~l~~~~v~~~~i~P~~l~-lP~~~nA~~i~yV~~G~G~v~~v~p~~~~~~~~~~   90 (200)
T d2phla1          14 TLFKNQYGHIRVLQRF--DQQSKRLQNLEDYRLVEFRSKPETLL-LPQQADAELLLVVRSGSAILVLVKPDDRREYFFLT   90 (200)
T ss_dssp             EEEEETTEEEEEECCH--HHHCGGGGGGTTCEEEEEEECSSEEE-EEEEESEEEEEEEEESEEEEEEEETTTEEEEEEEE
T ss_pred             ceeECCCccEEEeccc--cccchhhhcccceEEEEEEecCCcee-eeecCCCCEEEEEEeeeEEEEEEECCCCceeehhh
Confidence            3445667889987431  12333 23335667777889998743 232223347999999998884    2110      


Q ss_pred             -eeecCccEEEEcCCCeEEEEecC-CCCeEEEEEe
Q 020448          247 -SAVSAHNVLVLSLGDGLSAWNRS-SKQLRFVLIA  279 (326)
Q Consensus       247 -~~l~~~d~~~l~~g~~l~i~a~~-~~~a~~LL~~  279 (326)
                       ..+.+||++.+..|...-+.+.+ +++.+++.+.
T Consensus        91 ~~~l~~GDv~~iPaG~~~~~~n~~~~~~l~~~~l~  125 (200)
T d2phla1          91 SDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLA  125 (200)
T ss_dssp             SSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEE
T ss_pred             ccCccCCCEEEECCCCeEEEEECCCCCCEEEEEEe
Confidence             14899999999988877776532 2355555543

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=84.00  E-value=0.79  Score=33.19  Aligned_cols=49  Identities=22%  Similarity=0.237  Sum_probs=38.0

Q ss_pred             CCCCCCCCCceEEEEEeeceEEEecCCCCeeeeeCCcEEEEecC-CCeEEEe
Q 020448           91 GFPDHPHRGFETVTYMLQGGITHQDFSGHKGTIHTGDVQWMTAG-RGIVHSE  141 (326)
Q Consensus        91 GF~~HPHrG~EtvTyvl~G~l~H~DS~Gn~~~i~~GdvQwMtAG-sGI~HsE  141 (326)
                      .|+.+ + ...=+-|+|+|++.-.|.-|..-.++|||+-.+.+| +|..+..
T Consensus        29 ~f~~~-y-~~~E~~~ileG~v~i~~~~G~~~~~~aGD~~~~p~G~~~~W~v~   78 (88)
T d1o5ua_          29 EFDWY-Y-DTNETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVL   78 (88)
T ss_dssp             EEEEE-C-SSCEEEEEEEEEEEEEETTCCEEEEETTCEEEECTTCEEEEEEE
T ss_pred             EEEEE-c-CccEEEEEEEeEEEEEcCCCCEEEEeCCCEEEECCCCEEEEEEC
Confidence            46544 2 234557999999999998899989999999999999 5565543

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=83.64  E-value=2.6  Score=34.19  Aligned_cols=70  Identities=17%  Similarity=0.253  Sum_probs=54.6

Q ss_pred             CCCCCCCCCCCCCCceEEEEEeeceEEEe-----cCCCC------eeeeeCCcEEEEecCCCeEEEeeeCC-CCceeEEE
Q 020448           86 VSPPAGFPDHPHRGFETVTYMLQGGITHQ-----DFSGH------KGTIHTGDVQWMTAGRGIVHSEMPAG-EGVQNGLQ  153 (326)
Q Consensus        86 ~~~~~GF~~HPHrG~EtvTyvl~G~l~H~-----DS~Gn------~~~i~~GdvQwMtAGsGI~HsE~~~~-~~~~~~lQ  153 (326)
                      ..|+..-|.|=|.|..-+..|++|++...     |...+      ...+.+|+|-++.--.|| |+-.|.+ +++.-.|.
T Consensus        73 W~pGq~tpiHDH~~~~~~~~vl~G~l~e~~Y~~~~~~~~~l~~~~~~~~~~g~v~~~~~~~~i-H~v~N~~~~~~avsLH  151 (186)
T d3elna1          73 WGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGL-HRVENVSHTEPAVSLH  151 (186)
T ss_dssp             ECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCE-EEEECCCSSCCEEEEE
T ss_pred             ccCCCcCCCccCCCCcEEEEEcccceEEEEeecCCCCcccccccceEEecCCCEEEeCCCCCc-ceeecCCCCCCeEEEE
Confidence            36778889999999999999999998754     33222      357889999999877775 9988876 46666777


Q ss_pred             EEe
Q 020448          154 LWI  156 (326)
Q Consensus       154 LWi  156 (326)
                      +--
T Consensus       152 vYs  154 (186)
T d3elna1         152 LYS  154 (186)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            764

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=82.83  E-value=0.63  Score=37.63  Aligned_cols=58  Identities=19%  Similarity=0.277  Sum_probs=43.1

Q ss_pred             CCCCCCCCCCCCCCceEEEEEeeceEEE--ecCCCCe-eeeeCCcEEEEecCCCeEEEeeeCCC
Q 020448           86 VSPPAGFPDHPHRGFETVTYMLQGGITH--QDFSGHK-GTIHTGDVQWMTAGRGIVHSEMPAGE  146 (326)
Q Consensus        86 ~~~~~GF~~HPHrG~EtvTyvl~G~l~H--~DS~Gn~-~~i~~GdvQwMtAGsGI~HsE~~~~~  146 (326)
                      +.|++-+.+| |.+-+-|.||++|+..-  -+.-+.. -.|++|||-++.||  ..|...|..+
T Consensus        51 i~p~~~~~Ph-~~~a~ei~yV~~G~g~v~~v~~~~~~~~~l~~GDv~~vP~G--~~h~~~n~~~  111 (170)
T d1uija1          51 SKPNTILLPH-HADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAG--TTYYLVNPHD  111 (170)
T ss_dssp             ECTTEEEEEE-EESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEEEECTT--CEEEEEECCS
T ss_pred             ecCCcccccc-cCCCCEEEEEEEEEEEEEEEeCCCcEEEEecCCcEEEECCC--CeEEEEEcCC
Confidence            5666557788 88899999999988543  3332322 46999999999995  7788888753

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=80.99  E-value=1.6  Score=31.36  Aligned_cols=40  Identities=15%  Similarity=0.107  Sum_probs=30.5

Q ss_pred             CeEEEEEeecceEEcCcC--ceeecCccEEEEcCCCeEEEEe
Q 020448          228 WNAFVYTIEGEGVFGTVN--SSAVSAHNVLVLSLGDGLSAWN  267 (326)
Q Consensus       228 ~~~~lyVl~G~~~i~g~~--~~~l~~~d~~~l~~g~~l~i~a  267 (326)
                      ..=++||++|+++|...+  ...+.+||++.+..|-..+.+.
T Consensus        36 ~~E~~~ileG~v~i~~~~G~~~~~~aGD~~~~p~G~~~~W~v   77 (88)
T d1o5ua_          36 TNETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKV   77 (88)
T ss_dssp             SCEEEEEEEEEEEEEETTCCEEEEETTCEEEECTTCEEEEEE
T ss_pred             ccEEEEEEEeEEEEEcCCCCEEEEeCCCEEEECCCCEEEEEE
Confidence            458899999999994322  2569999999999887665544

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=80.95  E-value=5.8  Score=35.19  Aligned_cols=76  Identities=24%  Similarity=0.324  Sum_probs=50.8

Q ss_pred             CccEEEEE-EECCCCeEEEecCCCCeEEEEEeecceE---EcCcCceeecCccEEEEcCCCeEEEEecCCCCeEEEEEee
Q 020448          205 TPTMFLDF-TLKPRAQIHQSIPETWNAFVYTIEGEGV---FGTVNSSAVSAHNVLVLSLGDGLSAWNRSSKQLRFVLIAG  280 (326)
Q Consensus       205 ~~~~~~di-~L~~g~~~~~~~p~~~~~~lyVl~G~~~---i~g~~~~~l~~~d~~~l~~g~~l~i~a~~~~~a~~LL~~G  280 (326)
                      ++..+..+ .|.+|+....--. ......||++|+..   |+| +...+++||++.+..+.-=.+.+.+++.+.+|.+.-
T Consensus        84 t~~l~~~~~~l~PGe~~~~H~H-~~~~~~~vi~G~g~~t~v~g-~~~~~~~GD~~~~P~~~~H~~~n~~d~~~~~l~~~d  161 (351)
T d2phda1          84 SPTMWAGIQYLGPRETAPEHRH-SQNAFRFVVEGEGVWTVVNG-DPVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDGLD  161 (351)
T ss_dssp             SSSCEEEEEEECTTCEEEEEEE-SSCEEEEEEECEEEEEEETT-EEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEEC
T ss_pred             CchhhhheEEECCCCcCCcccc-ccceeEEEEECCcEEEEECC-EEEEEeCCCEEEeCCCceEEEEEcCCCCEEEEEeec
Confidence            34444444 6799987654333 34689999999953   355 236799999999987776666666566676666553


Q ss_pred             cc
Q 020448          281 QP  282 (326)
Q Consensus       281 ~p  282 (326)
                      .|
T Consensus       162 ~p  163 (351)
T d2phda1         162 IP  163 (351)
T ss_dssp             HH
T ss_pred             Cc
Confidence            33