Citrus Sinensis ID: 020469

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILSCL
ccccccccccccccEEEccccEEEEccHHHHHHHHHHHHccEEEEccccEEEEEcccccEEccccccccccEEEccccHHHHHHHHcccccEEEEEEEEEEEEEEcccccEEEEcccccccccccEEEEcccccccHHHHHHHcccccccccccHHHHHHHcccccccEEEEEEEccccccccccccEEEcccccEEEEEcccccccccccccEEEEEEcHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccccccccccEEEcccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHccc
ccccHHcccccccccEcccccEEEcccHHHHHHHHHHHHccccccccccEEEEccccccccccccccccccEEcccccHHHHHHHHcccccEEEEEEEEEEEEEEcccccEEEEcccccccccccEEEEEccccccccHHHHcccccccHHcccHHHHHHHHcccccHHHHHEEHcccccccccccccEEcccccHHEEEEccccccccccccEEEEEEcHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccEEccccccEEEccHcccccHHHHHHHHHHHHHHHHHHHHcc
msqrretsedgnemlfdhgapfftvtnNDVLALVREWESGGLVAEWKVnlgsfdrvSKKFVNIQQdgmnkkyvgvpgmnSICKAlchqpgveskfgvgvgrfewledknlwsvsgldgqslgqfngvvasdknvvsprfrdvtgrpppldltfapdlavkleeipvnpcFALMLAfseplssipvkgfsfqdsevlswahcdsskpgrsanserWVLHSTADYARTVIaqtglqkpseATLKKVAEEMFQEFqgtglsiplpifrkahrwgsafpaasiaKEERCLWDVKRRLAICgdfcvspnvegAILSGLDAASKLTEILSCL
msqrretsedgnemlfdhgapfFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGvvasdknvvsprfrdvtgrpppldLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCdsskpgrsanseRWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILSCL
MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILSCL
**************LFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHC************RWVLHSTADYARTVIAQTGL*******LKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGLDAASKLT******
*SQRR**SEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRV**********GMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILSCL
***********NEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWA************SERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILSCL
************EMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRV*KK*******GMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILSCL
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MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILSCL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query326
224115286372 predicted protein [Populus trichocarpa] 0.996 0.873 0.751 1e-146
147778135369 hypothetical protein VITISV_000801 [Viti 1.0 0.883 0.720 1e-142
225462207369 PREDICTED: uncharacterized protein LOC10 1.0 0.883 0.717 1e-141
449460040369 PREDICTED: uncharacterized protein LOC10 1.0 0.883 0.693 1e-132
449502153369 PREDICTED: uncharacterized protein LOC10 1.0 0.883 0.690 1e-132
22330276384 FAD/NAD(P)-binding oxidoreductase domain 1.0 0.848 0.690 1e-132
6056384396 Hypothetical protein [Arabidopsis thalia 1.0 0.823 0.690 1e-132
356525815369 PREDICTED: uncharacterized protein LOC10 1.0 0.883 0.680 1e-131
297847978384 hypothetical protein ARALYDRAFT_474667 [ 1.0 0.848 0.687 1e-131
297847968400 predicted protein [Arabidopsis lyrata su 1.0 0.815 0.680 1e-128
>gi|224115286|ref|XP_002332207.1| predicted protein [Populus trichocarpa] gi|222875314|gb|EEF12445.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 248/330 (75%), Positives = 289/330 (87%), Gaps = 5/330 (1%)

Query: 1   MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKF 60
           MSQRRE SEDG E+LFDHGAPFF+ +N+DVL LV EWES GLV EWK N GSFD +SKKF
Sbjct: 44  MSQRREISEDGKELLFDHGAPFFSASNSDVLRLVHEWESKGLVEEWKENCGSFDCISKKF 103

Query: 61  VNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQS 120
           ++I+Q+  NKKYVG+PGMNSICKALC++ GVESKFGV +GR E L+D+  WS++GLDGQ+
Sbjct: 104 LDIEQEAPNKKYVGIPGMNSICKALCNETGVESKFGVSIGRLECLDDEK-WSLTGLDGQN 162

Query: 121 LGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPL 180
           LG+F+GVV SDK + SPRF DVTGRPPPLDL+  P+LA+KL++IPV+PCFALMLAFSEPL
Sbjct: 163 LGRFSGVVVSDKGIASPRFTDVTGRPPPLDLSLTPELALKLQDIPVSPCFALMLAFSEPL 222

Query: 181 SSIPVKGFSFQDSEVLSWAHCDSSKPGRS----ANSERWVLHSTADYARTVIAQTGLQKP 236
           SSI VKGFSF++SE+LSW+HCDSSKPGRS    A+ ERWVLHSTA+YAR +IAQTGLQKP
Sbjct: 223 SSISVKGFSFKNSEILSWSHCDSSKPGRSTARHASVERWVLHSTANYARGIIAQTGLQKP 282

Query: 237 SEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAIC 296
           S ATL KVAEE+FQEFQ  GL+IP P F KAHRWGSAFP ASIA+E++CLWD K+RLAIC
Sbjct: 283 SSATLTKVAEELFQEFQSIGLNIPRPFFMKAHRWGSAFPTASIAREQKCLWDRKKRLAIC 342

Query: 297 GDFCVSPNVEGAILSGLDAASKLTEILSCL 326
           GDFCVSPNVEGAILSGL AASKLTE+LSCL
Sbjct: 343 GDFCVSPNVEGAILSGLAAASKLTEMLSCL 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147778135|emb|CAN76485.1| hypothetical protein VITISV_000801 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225462207|ref|XP_002270560.1| PREDICTED: uncharacterized protein LOC100264528 [Vitis vinifera] gi|296082792|emb|CBI21797.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449460040|ref|XP_004147754.1| PREDICTED: uncharacterized protein LOC101216187 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449502153|ref|XP_004161558.1| PREDICTED: uncharacterized protein LOC101224633 [Cucumis sativus] Back     alignment and taxonomy information
>gi|22330276|ref|NP_175996.2| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana] gi|17978976|gb|AAL47449.1| T6H22.19/T6H22.19 [Arabidopsis thaliana] gi|22655396|gb|AAM98290.1| At1g55980/T6H22.19 [Arabidopsis thaliana] gi|222423033|dbj|BAH19499.1| AT1G56000 [Arabidopsis thaliana] gi|332195208|gb|AEE33329.1| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|6056384|gb|AAF02848.1|AC009894_19 Hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356525815|ref|XP_003531517.1| PREDICTED: uncharacterized protein LOC100816696 [Glycine max] Back     alignment and taxonomy information
>gi|297847978|ref|XP_002891870.1| hypothetical protein ARALYDRAFT_474667 [Arabidopsis lyrata subsp. lyrata] gi|297337712|gb|EFH68129.1| hypothetical protein ARALYDRAFT_474667 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297847968|ref|XP_002891865.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297337707|gb|EFH68124.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query326
TAIR|locus:2012030384 AT1G56000 [Arabidopsis thalian 1.0 0.848 0.690 5.7e-123
TAIR|locus:2012005466 AT1G55980 [Arabidopsis thalian 0.828 0.579 0.662 1.7e-98
TAIR|locus:2084903486 AT3G04650 [Arabidopsis thalian 0.883 0.592 0.287 3.7e-26
UNIPROTKB|Q48MT7328 PSPPH_1014 "Uncharacterized pr 0.490 0.487 0.373 4.9e-21
UNIPROTKB|Q4K6B1328 PFL_5143 "FAD dependent oxidor 0.490 0.487 0.408 1e-20
TAIR|locus:2012030 AT1G56000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1209 (430.6 bits), Expect = 5.7e-123, P = 5.7e-123
 Identities = 225/326 (69%), Positives = 265/326 (81%)

Query:     1 MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKF 60
             MSQRRE  EDG E++FDHGAPFF V+N+D +ALV EWES G V+EWK   GSFD  S KF
Sbjct:    59 MSQRREIGEDGKELMFDHGAPFFCVSNSDAMALVHEWESRGFVSEWKQVFGSFDCASNKF 118

Query:    61 VNIQQDGMNKKYVGVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQS 120
             + IQQ+G  KKYVGVPGMNSI KALC++ GV+S FG G+ + EWLE++  W ++   G++
Sbjct:   119 LGIQQEGDAKKYVGVPGMNSISKALCNESGVKSMFGTGIAKMEWLEEEIPWLLTDSKGEN 178

Query:   121 LGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPL 180
             LG+F+GVVASDKN+VSPRF  VTG PPPLDL+  P+LA KL+ IPV PCF+LMLAF EPL
Sbjct:   179 LGRFDGVVASDKNIVSPRFTQVTGLPPPLDLSLVPELATKLQNIPVLPCFSLMLAFKEPL 238

Query:   181 SSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEAT 240
             SSIPVKG SF++SE+LSWAHC+S+KPGRS +SERW+LHST DYA +VIA+TGLQK S  T
Sbjct:   239 SSIPVKGLSFKNSEILSWAHCESTKPGRSTDSERWILHSTPDYANSVIAKTGLQKLSSET 298

Query:   241 LKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFC 300
             L K++EEMF+EFQ +GL   LP F KAHRWGSAFPA SIA EERCLWD  R LAICGDFC
Sbjct:   299 LNKISEEMFKEFQCSGLVSSLPFFMKAHRWGSAFPAKSIAVEERCLWDRNRNLAICGDFC 358

Query:   301 VSPNVEGAILSGLDAASKLTEILSCL 326
             VSPNVEGAILSGL AASKL +  SCL
Sbjct:   359 VSPNVEGAILSGLAAASKLLQTSSCL 384
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2012005 AT1G55980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084903 AT3G04650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q48MT7 PSPPH_1014 "Uncharacterized protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
UNIPROTKB|Q4K6B1 PFL_5143 "FAD dependent oxidoreductase" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_scaffold_202000024
hypothetical protein (372 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query326
COG3380331 COG3380, COG3380, Predicted NAD/FAD-dependent oxid 2e-40
>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] Back     alignment and domain information 
 Score =  144 bits (364), Expect = 2e-40
 Identities = 86/312 (27%), Positives = 121/312 (38%), Gaps = 34/312 (10%)

Query: 16  FDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGV 75
           FDHGA +F   +   L  V      GLV  W   + +F             G    YVG 
Sbjct: 50  FDHGAQYFKPRDELFLRAVEALRDDGLVDVWTPAVWTF-----TGDGSPPRGDEDPYVGE 104

Query: 76  PGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVV 135
           PGM+++ K L     V       V         N W++   DG    QF+ VV      +
Sbjct: 105 PGMSALAKFLATDLTV--VLETRVTEVAR--TDNDWTLHTDDGTRHTQFDDVV------L 154

Query: 136 SPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEV 195
           +                    L   L ++   PC++ +L + +PL   P  G +F D   
Sbjct: 155 AIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLD-RPWPG-NFVDGHP 212

Query: 196 LSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEM---FQEF 252
           L+W   D+SK G   + E WV+ ++ D++R  +     Q         V   +    QE 
Sbjct: 213 LAWLARDASKKGHVPDGEIWVVQASPDWSREHLDHPAEQ---------VIVALRAAAQEL 263

Query: 253 QGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLW-DVKRRLAICGDFCVSPNVEGAILS 311
            G  L  P   +  AHRW  A P    A     L  D +  L  CGD+C    VEGA+LS
Sbjct: 264 DGDRLPEPD--WSDAHRWRYAIPN--DAVAGPPLDADRELPLYACGDWCAGGRVEGAVLS 319

Query: 312 GLDAASKLTEIL 323
           GL AA  +   L
Sbjct: 320 GLAAADHILNGL 331

Length = 331

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 326
COG3380331 Predicted NAD/FAD-dependent oxidoreductase [Genera 100.0
TIGR00562462 proto_IX_ox protoporphyrinogen oxidase. This prote 99.94
PLN02576496 protoporphyrinogen oxidase 99.93
PRK12416463 protoporphyrinogen oxidase; Provisional 99.91
PRK11883451 protoporphyrinogen oxidase; Reviewed 99.9
TIGR03467419 HpnE squalene-associated FAD-dependent desaturase. 99.86
PLN02268435 probable polyamine oxidase 99.85
PLN02328 808 lysine-specific histone demethylase 1 homolog 99.84
PLN02529 738 lysine-specific histone demethylase 1 99.83
COG1232444 HemY Protoporphyrinogen oxidase [Coenzyme metaboli 99.8
PLN03000 881 amine oxidase 99.77
PRK07233434 hypothetical protein; Provisional 99.77
PF01593450 Amino_oxidase: Flavin containing amine oxidoreduct 99.75
PLN02976 1713 amine oxidase 99.74
PLN02676487 polyamine oxidase 99.73
COG1231450 Monoamine oxidase [Amino acid transport and metabo 99.73
PLN02568539 polyamine oxidase 99.68
KOG1276491 consensus Protoporphyrinogen oxidase [Coenzyme tra 99.64
PLN02612567 phytoene desaturase 99.64
TIGR02731453 phytoene_desat phytoene desaturase. Plants and cya 99.6
TIGR02732474 zeta_caro_desat carotene 7,8-desaturase. Carotene 99.59
PRK07208479 hypothetical protein; Provisional 99.51
PLN02487569 zeta-carotene desaturase 99.48
TIGR02733492 desat_CrtD C-3',4' desaturase CrtD. Members of thi 99.35
KOG0029501 consensus Amine oxidase [Secondary metabolites bio 99.27
TIGR02734502 crtI_fam phytoene desaturase. Phytoene is converte 99.08
TIGR02730493 carot_isom carotene isomerase. Members of this fam 99.01
KOG0685498 consensus Flavin-containing amine oxidase [Coenzym 99.0
COG2907447 Predicted NAD/FAD-binding protein [General functio 98.78
COG1233487 Phytoene dehydrogenase and related proteins [Secon 97.7
TIGR01984382 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T 97.61
KOG4254561 consensus Phytoene desaturase [Coenzyme transport 97.25
PRK09126392 hypothetical protein; Provisional 97.16
PF07156368 Prenylcys_lyase: Prenylcysteine lyase; InterPro: I 97.07
PRK07494388 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio 97.03
TIGR01988385 Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub 96.85
PRK05732395 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 96.81
PRK08850405 2-octaprenyl-6-methoxyphenol hydroxylase; Validate 96.8
COG0654387 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and 96.54
PRK07190 487 hypothetical protein; Provisional 96.54
PRK07333403 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio 96.45
PRK08020391 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin 96.29
PRK08773392 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 96.29
PRK08013400 oxidoreductase; Provisional 96.28
PRK05714405 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 96.22
PRK07045388 putative monooxygenase; Reviewed 96.09
PRK10157428 putative oxidoreductase FixC; Provisional 96.0
PRK07364415 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 95.98
PRK08849384 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 95.97
PF13738203 Pyr_redox_3: Pyridine nucleotide-disulphide oxidor 95.91
PRK07608388 ubiquinone biosynthesis hydroxylase family protein 95.44
PRK06617374 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 95.39
PRK06847375 hypothetical protein; Provisional 94.94
PTZ00363443 rab-GDP dissociation inhibitor; Provisional 94.9
PRK06834 488 hypothetical protein; Provisional 94.8
TIGR01989437 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T 94.35
PRK06183 538 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va 94.24
PRK06184 502 hypothetical protein; Provisional 94.18
COG2081408 Predicted flavoproteins [General function predicti 94.05
PRK06185407 hypothetical protein; Provisional 93.97
PRK10015429 oxidoreductase; Provisional 93.92
PRK06996398 hypothetical protein; Provisional 93.37
PRK08244 493 hypothetical protein; Provisional 93.23
TIGR02032295 GG-red-SF geranylgeranyl reductase family. This mo 93.19
PRK08132 547 FAD-dependent oxidoreductase; Provisional 92.88
PRK06126 545 hypothetical protein; Provisional 92.72
PF01266358 DAO: FAD dependent oxidoreductase; InterPro: IPR00 92.33
PF03486409 HI0933_like: HI0933-like protein; InterPro: IPR004 92.33
PRK08294 634 phenol 2-monooxygenase; Provisional 92.28
PF13454156 NAD_binding_9: FAD-NAD(P)-binding 91.63
COG0644396 FixC Dehydrogenases (flavoproteins) [Energy produc 91.56
TIGR03197381 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri 90.8
TIGR01790388 carotene-cycl lycopene cyclase family protein. Thi 90.52
TIGR02352337 thiamin_ThiO glycine oxidase ThiO. This family con 90.47
PRK11445351 putative oxidoreductase; Provisional 89.95
PF01494356 FAD_binding_3: FAD binding domain; InterPro: IPR00 89.65
TIGR03219414 salicylate_mono salicylate 1-monooxygenase. Member 89.56
PLN02172461 flavin-containing monooxygenase FMO GS-OX 89.55
TIGR00031377 UDP-GALP_mutase UDP-galactopyranose mutase. The ge 89.24
COG0579429 Predicted dehydrogenase [General function predicti 89.15
PF00743 531 FMO-like: Flavin-binding monooxygenase-like; Inter 88.96
PLN02463 447 lycopene beta cyclase 87.34
PRK13339497 malate:quinone oxidoreductase; Reviewed 87.32
TIGR03862376 flavo_PP4765 uncharacterized flavoprotein, PP_4765 87.1
PRK07236386 hypothetical protein; Provisional 86.68
COG3349485 Uncharacterized conserved protein [Function unknow 84.76
PRK01747662 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans 84.17
PRK04965377 NADH:flavorubredoxin oxidoreductase; Provisional 83.59
PRK07538413 hypothetical protein; Provisional 83.56
PF0007080 Pyr_redox: Pyridine nucleotide-disulphide oxidored 82.89
PRK06753373 hypothetical protein; Provisional 82.62
PRK07588391 hypothetical protein; Provisional 81.73
PRK11728393 hydroxyglutarate oxidase; Provisional 80.55
PTZ00383497 malate:quinone oxidoreductase; Provisional 80.43
TIGR01292300 TRX_reduct thioredoxin-disulfide reductase. This m 80.04
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=6.9e-65  Score=432.51  Aligned_cols=290  Identities=29%  Similarity=0.508  Sum_probs=252.1

Q ss_pred             CcccccccCCCCceecccCCCceeeCChhHHHHHHHHHhCCccccccCceeeeeccCcceeecccCCCCceEEeCCCchH
Q 020469            1 MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNS   80 (326)
Q Consensus         1 matrr~~~~~~~~~~~DhGAq~ft~~~~~f~~~~~~~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~Gm~~   80 (326)
                      |||||.  +.|   .||||||||+++++.|.++|+.|.++|+|+.|...++.+.+.+ ..    +...+..|++.+||++
T Consensus        40 lAtRRl--~~g---~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~~~~~~~~~~-~~----~~~d~~pyvg~pgmsa  109 (331)
T COG3380          40 LATRRL--DGG---RFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTPAVWTFTGDG-SP----PRGDEDPYVGEPGMSA  109 (331)
T ss_pred             hheecc--CCc---cccccceeecCCchHHHHHHHHHHhCCceeeccccccccccCC-CC----CCCCCCccccCcchHH
Confidence            799998  555   4999999999999999999999999999999998888876432 10    2222233999999999


Q ss_pred             HHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcchhhhcCCCCCCCCCcChHHHHH
Q 020469           81 ICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDLAVK  160 (326)
Q Consensus        81 l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~ll~~~~~~~~~~~~~~~~~  160 (326)
                      |+|+|++.+.  |+++++|+.|.+  .++.|+|++++|....+||.||||   +|+||++.||...   +..+..+++..
T Consensus       110 lak~LAtdL~--V~~~~rVt~v~~--~~~~W~l~~~~g~~~~~~d~vvla---~PAPQ~~~LLt~~---~~~~p~~l~~~  179 (331)
T COG3380         110 LAKFLATDLT--VVLETRVTEVAR--TDNDWTLHTDDGTRHTQFDDVVLA---IPAPQTATLLTTD---ADDLPAALRAA  179 (331)
T ss_pred             HHHHHhccch--hhhhhhhhhhee--cCCeeEEEecCCCcccccceEEEe---cCCCcchhhcCcc---cccchHHHHHh
Confidence            9999999776  899999999998  688999999888766799999999   9999999998521   23455679999


Q ss_pred             hccCCCcceeeeeeecCCCCCCCCCCceeecCCCceeeeeecCCCCCCCCCCceEEEEeCHHHHHHhHhhcCCCCCchhh
Q 020469          161 LEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEAT  240 (326)
Q Consensus       161 l~~~~~~~~~~v~l~~~~~~~~~p~~g~~~~~~~~l~w~~~~sskpgr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (326)
                      +..|.|.|||++++.|++++. .|+.|.++ ++++|.|+++|.+||||.+.++.||+|++++||+.|++.         +
T Consensus       180 ~a~V~y~Pc~s~~lg~~q~l~-~P~~G~~v-dg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~---------~  248 (331)
T COG3380         180 LADVVYAPCWSAVLGYPQPLD-RPWPGNFV-DGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLDH---------P  248 (331)
T ss_pred             hccceehhHHHHHhcCCccCC-CCCCCccc-CCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhhcC---------C
Confidence            999999999999999999986 69999666 556999999999999999888899999999999999987         5


Q ss_pred             HHHHHHHHHHHHHhcCC-CCCCcceeeeeecCCCCCCCCCCCCCCeee-ccCCCeEEeeCCCCCCChhHHHHHHHHHHHH
Q 020469          241 LKKVAEEMFQEFQGTGL-SIPLPIFRKAHRWGSAFPAASIAKEERCLW-DVKRRLAICGDFCVSPNVEGAILSGLDAASK  318 (326)
Q Consensus       241 ~~~v~~~l~~~~~~~~~-~~~~p~~~~~~rW~~A~p~~~~~~~~~~~~-~~~~~l~~aGD~~~g~~vegA~~SG~~aA~~  318 (326)
                      .++++..|..+++++.+ .++.|.++.+||||||+|+....  .++++ +...+|++|||||.|+++|||++||+++|++
T Consensus       249 ~e~~i~~l~aA~~~~~~~~~~~p~~s~~H~WrYA~P~~~~~--~~~L~ad~~~~l~~cGDwc~GgrVEgA~LSGlAaA~~  326 (331)
T COG3380         249 AEQVIVALRAAAQELDGDRLPEPDWSDAHRWRYAIPNDAVA--GPPLDADRELPLYACGDWCAGGRVEGAVLSGLAAADH  326 (331)
T ss_pred             HHHHHHHHHHhhhhccCCCCCcchHHHhhcccccccccccc--CCccccCCCCceeeecccccCcchhHHHhccHHHHHH
Confidence            78888888888887643 67899999999999999998876  57777 8899999999999999999999999999999


Q ss_pred             HHhhh
Q 020469          319 LTEIL  323 (326)
Q Consensus       319 l~~~l  323 (326)
                      |++.|
T Consensus       327 i~~~L  331 (331)
T COG3380         327 ILNGL  331 (331)
T ss_pred             HHhcC
Confidence            98765

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase Back     alignment and domain information
>PLN02576 protoporphyrinogen oxidase Back     alignment and domain information
>PRK12416 protoporphyrinogen oxidase; Provisional Back     alignment and domain information
>PRK11883 protoporphyrinogen oxidase; Reviewed Back     alignment and domain information
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase Back     alignment and domain information
>PLN02268 probable polyamine oxidase Back     alignment and domain information
>PLN02328 lysine-specific histone demethylase 1 homolog Back     alignment and domain information
>PLN02529 lysine-specific histone demethylase 1 Back     alignment and domain information
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] Back     alignment and domain information
>PLN03000 amine oxidase Back     alignment and domain information
>PRK07233 hypothetical protein; Provisional Back     alignment and domain information
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) Back     alignment and domain information
>PLN02976 amine oxidase Back     alignment and domain information
>PLN02676 polyamine oxidase Back     alignment and domain information
>COG1231 Monoamine oxidase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02568 polyamine oxidase Back     alignment and domain information
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] Back     alignment and domain information
>PLN02612 phytoene desaturase Back     alignment and domain information
>TIGR02731 phytoene_desat phytoene desaturase Back     alignment and domain information
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase Back     alignment and domain information
>PRK07208 hypothetical protein; Provisional Back     alignment and domain information
>PLN02487 zeta-carotene desaturase Back     alignment and domain information
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD Back     alignment and domain information
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR02734 crtI_fam phytoene desaturase Back     alignment and domain information
>TIGR02730 carot_isom carotene isomerase Back     alignment and domain information
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] Back     alignment and domain information
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only] Back     alignment and domain information
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase Back     alignment and domain information
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK09126 hypothetical protein; Provisional Back     alignment and domain information
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1 Back     alignment and domain information
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family Back     alignment and domain information
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated Back     alignment and domain information
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] Back     alignment and domain information
>PRK07190 hypothetical protein; Provisional Back     alignment and domain information
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed Back     alignment and domain information
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated Back     alignment and domain information
>PRK08013 oxidoreductase; Provisional Back     alignment and domain information
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Back     alignment and domain information
>PRK07045 putative monooxygenase; Reviewed Back     alignment and domain information
>PRK10157 putative oxidoreductase FixC; Provisional Back     alignment and domain information
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Back     alignment and domain information
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A Back     alignment and domain information
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional Back     alignment and domain information
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PRK06847 hypothetical protein; Provisional Back     alignment and domain information
>PTZ00363 rab-GDP dissociation inhibitor; Provisional Back     alignment and domain information
>PRK06834 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 Back     alignment and domain information
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated Back     alignment and domain information
>PRK06184 hypothetical protein; Provisional Back     alignment and domain information
>COG2081 Predicted flavoproteins [General function prediction only] Back     alignment and domain information
>PRK06185 hypothetical protein; Provisional Back     alignment and domain information
>PRK10015 oxidoreductase; Provisional Back     alignment and domain information
>PRK06996 hypothetical protein; Provisional Back     alignment and domain information
>PRK08244 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02032 GG-red-SF geranylgeranyl reductase family Back     alignment and domain information
>PRK08132 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PRK06126 hypothetical protein; Provisional Back     alignment and domain information
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 Back     alignment and domain information
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases Back     alignment and domain information
>PRK08294 phenol 2-monooxygenase; Provisional Back     alignment and domain information
>PF13454 NAD_binding_9: FAD-NAD(P)-binding Back     alignment and domain information
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] Back     alignment and domain information
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain Back     alignment and domain information
>TIGR01790 carotene-cycl lycopene cyclase family protein Back     alignment and domain information
>TIGR02352 thiamin_ThiO glycine oxidase ThiO Back     alignment and domain information
>PRK11445 putative oxidoreductase; Provisional Back     alignment and domain information
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways Back     alignment and domain information
>TIGR03219 salicylate_mono salicylate 1-monooxygenase Back     alignment and domain information
>PLN02172 flavin-containing monooxygenase FMO GS-OX Back     alignment and domain information
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase Back     alignment and domain information
>COG0579 Predicted dehydrogenase [General function prediction only] Back     alignment and domain information
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] Back     alignment and domain information
>PLN02463 lycopene beta cyclase Back     alignment and domain information
>PRK13339 malate:quinone oxidoreductase; Reviewed Back     alignment and domain information
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family Back     alignment and domain information
>PRK07236 hypothetical protein; Provisional Back     alignment and domain information
>COG3349 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed Back     alignment and domain information
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional Back     alignment and domain information
>PRK07538 hypothetical protein; Provisional Back     alignment and domain information
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] Back     alignment and domain information
>PRK06753 hypothetical protein; Provisional Back     alignment and domain information
>PRK07588 hypothetical protein; Provisional Back     alignment and domain information
>PRK11728 hydroxyglutarate oxidase; Provisional Back     alignment and domain information
>PTZ00383 malate:quinone oxidoreductase; Provisional Back     alignment and domain information
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query326
3kkj_A336 X-Ray Structure Of P. Syringae Q888a4 Oxidoreductas 9e-25
>pdb|3KKJ|A Chain A, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At Resolution 2.5a, Northeast Structural Genomics Consortium Target Psr10 Length = 336 Back     alignment and structure 
Iteration: 1

 Score =  110 bits (276), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 145/306 (47%), Gaps = 37/306 (12%)
Query: 16  FDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFD--RVSKKFVNIQQDGMNKKYV 73
            D GA +FT  +      V++W++ G VAEW   L +F   R+S             ++V
Sbjct: 51  LDXGAQYFTARDRRFATAVKQWQAQGHVAEWTPLLYNFHAGRLSPS------PDEQVRWV 104
Query: 74  GVPGMNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKN 133
           G PG ++I +A      V     +     E    +  W++   +GQ+ G F+ V+     
Sbjct: 105 GKPGXSAITRAXRGDXPVSFSCRI----TEVFRGEEHWNLLDAEGQNHGPFSHVI----- 155
Query: 134 VVSPRFRDVTGRPPPLDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDS 193
           + +P  +  T       L  AP LA  +  +  +P +A+ LAF  PL + P +G   QDS
Sbjct: 156 IATPAPQAST------LLAAAPKLASVVAGVKXDPTWAVALAFETPLQT-PXQGCFVQDS 208
Query: 194 EVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEF- 252
             L W   + SKP R    + W+LH+T+ ++R  +         +A+ ++V E +   F 
Sbjct: 209 P-LDWLARNRSKPERDDTLDTWILHATSQWSRQNL---------DASREQVIEHLHGAFA 258
Query: 253 QGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSG 312
           +    + P P+F  AHRW  A PA   A E   L D    + +CGD+C+S  VEGA LSG
Sbjct: 259 ELIDCTXPAPVFSLAHRWLYARPAG--AHEWGALSDADLGIYVCGDWCLSGRVEGAWLSG 316
Query: 313 LDAASK 318
            +AA +
Sbjct: 317 QEAARR 322

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query326
1yvv_A336 Amine oxidase, flavin-containing; oxidoreductase, 4e-38
3qj4_A342 Renalase; FAD/NAD(P)-binding rossmann fold superfa 5e-33
3i6d_A470 Protoporphyrinogen oxidase; protein-inhibitor comp 2e-06
3nks_A477 Protoporphyrinogen oxidase; FAD containing protein 7e-05
1sez_A504 Protoporphyrinogen oxidase, mitochondrial; FAD-bin 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342 Back     alignment and structure
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470 Back     alignment and structure
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477 Back     alignment and structure
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query326
3qj4_A342 Renalase; FAD/NAD(P)-binding rossmann fold superfa 100.0
1yvv_A336 Amine oxidase, flavin-containing; oxidoreductase, 100.0
3nks_A477 Protoporphyrinogen oxidase; FAD containing protein 99.92
3i6d_A470 Protoporphyrinogen oxidase; protein-inhibitor comp 99.9
3lov_A475 Protoporphyrinogen oxidase; structural genomics, J 99.89
2ivd_A478 PPO, PPOX, protoporphyrinogen oxidase; porphyrin b 99.88
2yg5_A453 Putrescine oxidase; oxidoreductase, flavin; HET: F 99.84
1s3e_A520 Amine oxidase [flavin-containing] B; human monoami 99.82
1sez_A504 Protoporphyrinogen oxidase, mitochondrial; FAD-bin 99.8
3ka7_A425 Oxidoreductase; structural genomics, PSI-2, protei 99.8
2jae_A489 L-amino acid oxidase; oxidoreductase, dimerisation 99.78
1b37_A472 Protein (polyamine oxidase); flavin-dependent amin 99.78
2vvm_A495 Monoamine oxidase N; FAD, peroxisome, flavoprotein 99.76
3kkj_A336 Amine oxidase, flavin-containing; oxidoreductase, 99.76
3nrn_A421 Uncharacterized protein PF1083; alpha-beta protein 99.75
2z3y_A662 Lysine-specific histone demethylase 1; chromatin, 99.75
2xag_A852 Lysine-specific histone demethylase 1; amine oxida 99.74
2iid_A498 L-amino-acid oxidase; flavoenzyme, FAD binding dom 99.7
4gut_A776 Lysine-specific histone demethylase 1B; histone de 99.7
4dsg_A484 UDP-galactopyranose mutase; rossmann fold, flavin 99.68
1rsg_A516 FMS1 protein; FAD binding motif, oxidoreductase; H 99.52
3k7m_X431 6-hydroxy-L-nicotine oxidase; enantiomeric substra 99.48
4gde_A513 UDP-galactopyranose mutase; flavin adenine dinucle 99.48
4dgk_A501 Phytoene dehydrogenase; the FAD/NAD(P)-binding ros 99.43
2b9w_A424 Putative aminooxidase; isomerase, conjugated linol 99.34
3ayj_A721 Pro-enzyme of L-phenylalanine oxidase; amino acid 99.22
2bi7_A384 UDP-galactopyranose mutase; FAD, flavoprotein, iso 98.5
1v0j_A399 UDP-galactopyranose mutase; flavoprotein, isomeras 98.5
1i8t_A367 UDP-galactopyranose mutase; rossman fold, FAD, con 98.37
2e1m_C181 L-glutamate oxidase; L-amino acid oxidase, FAD, L- 98.36
2bcg_G453 Secretory pathway GDP dissociation inhibitor; RABG 97.93
1d5t_A433 Guanine nucleotide dissociation inhibitor; ultra-h 97.67
1ryi_A382 Glycine oxidase; flavoprotein, protein-inhibitor c 96.33
1vg0_A650 RAB proteins geranylgeranyltransferase component A 96.02
3ihg_A 535 RDME; flavoenzyme, anthracycline, polyketide biosy 95.9
2qa2_A 499 CABE, polyketide oxygenase CABE; FAD, angucycline, 95.4
2qa1_A 500 PGAE, polyketide oxygenase PGAE; FAD, angucycline, 95.27
3p1w_A475 Rabgdi protein; GDI RAB, malaria, structural genom 95.17
3rp8_A407 Flavoprotein monooxygenase; FAD-binding protein, o 95.1
3hdq_A397 UDP-galactopyranose mutase; substrate and inhibito 95.06
2e1m_B130 L-glutamate oxidase; L-amino acid oxidase, FAD, L- 94.72
2e1m_A376 L-glutamate oxidase; L-amino acid oxidase, FAD, L- 94.45
3fmw_A 570 Oxygenase; mithramycin, baeyer-villiger, flavin bi 94.25
3nix_A421 Flavoprotein/dehydrogenase; structural genomics, P 93.97
3i3l_A 591 Alkylhalidase CMLS; flavin-dependent halogenase, c 93.8
3e1t_A 512 Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro 93.4
2dkh_A 639 3-hydroxybenzoate hydroxylase; flavoprotein, monoo 93.12
3cgv_A397 Geranylgeranyl reductase related protein; NP_39399 92.86
3pvc_A689 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 91.3
3nyc_A381 D-arginine dehydrogenase; FAD, imino-arginine, oxi 91.25
3ps9_A676 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 90.83
3dje_A438 Fructosyl amine: oxygen oxidoreductase; fructosyl- 90.52
3dme_A369 Conserved exported protein; structural genomics, P 90.39
3gwf_A 540 Cyclohexanone monooxygenase; flavoprotein biocatal 90.0
2xdo_A398 TETX2 protein; tetracycline degradation, tigecycli 89.44
2ywl_A180 Thioredoxin reductase related protein; uncharacter 89.26
4ap3_A 549 Steroid monooxygenase; oxidoreductase, baeyer-vill 89.11
4a9w_A357 Monooxygenase; baeyer-villiger, FAD, oxidoreductas 89.1
2vou_A397 2,6-dihydroxypyridine hydroxylase; oxidoreductase, 88.77
2uzz_A372 N-methyl-L-tryptophan oxidase; N-methyltryptophan 88.68
2x3n_A399 Probable FAD-dependent monooxygenase; oxidoreducta 88.51
4hb9_A412 Similarities with probable monooxygenase; flavin, 88.39
3v76_A417 Flavoprotein; structural genomics, PSI-biology, NE 88.09
3fpz_A326 Thiazole biosynthetic enzyme; FAD, mitochondrion, 87.7
2gv8_A447 Monooxygenase; FMO, FAD, NADPH, cofactor complex, 87.17
3d1c_A369 Flavin-containing putative monooxygenase; NP_37310 87.16
1y56_B382 Sarcosine oxidase; dehydrogenase, protein-protein 86.9
3uox_A 545 Otemo; baeyer-villiger monooxygenase, oxidoreducta 86.7
1w4x_A 542 Phenylacetone monooxygenase; baeyer-villiger, FAD; 86.24
2oln_A397 NIKD protein; flavoprotein, rossmann fold, oxidore 86.09
2i0z_A447 NAD(FAD)-utilizing dehydrogenases; structural geno 85.93
2gf3_A389 MSOX, monomeric sarcosine oxidase; flavoprotein ox 85.86
1pn0_A 665 Phenol 2-monooxygenase; two dimers, TLS refinement 85.62
1xdi_A499 RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun 85.31
2v3a_A384 Rubredoxin reductase; alkane degradation, NADH oxi 84.64
3lxd_A415 FAD-dependent pyridine nucleotide-disulphide oxido 84.36
2gqf_A401 Hypothetical protein HI0933; structural genomics, 84.21
3lzw_A332 Ferredoxin--NADP reductase 2; ferredoxin reductase 83.83
3ef6_A410 Toluene 1,2-dioxygenase system ferredoxin--NAD(+) 83.81
3iwa_A472 FAD-dependent pyridine nucleotide-disulphide oxido 83.11
3o0h_A484 Glutathione reductase; ssgcid, structur genomics, 82.65
1m6i_A493 Programmed cell death protein 8; apoptosis, AIF, o 81.7
3s5w_A463 L-ornithine 5-monooxygenase; class B flavin depend 81.61
2gag_B405 Heterotetrameric sarcosine oxidase beta-subunit; f 81.36
3nlc_A549 Uncharacterized protein VP0956; FAD-binding protei 81.21
2zbw_A335 Thioredoxin reductase; redox protein, oxidoreducta 81.09
1fl2_A310 Alkyl hydroperoxide reductase subunit F; reactive 80.09
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.2e-43  Score=327.26  Aligned_cols=293  Identities=20%  Similarity=0.288  Sum_probs=238.6

Q ss_pred             CcccccccCCCCceecccCCCceeeCCh---hHHHHHHHHHhCCccccccCceeeeeccCcceeecccCCCCceEEeCCC
Q 020469            1 MSQRRETSEDGNEMLFDHGAPFFTVTNN---DVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPG   77 (326)
Q Consensus         1 matrr~~~~~~~~~~~DhGAq~ft~~~~---~f~~~~~~~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~G   77 (326)
                      |+|+|.  ..+....+|||++||+.+++   .|.++++.|...|.+.+|........          ......+|+..+|
T Consensus        43 ~~~~~~--~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~g  110 (342)
T 3qj4_A           43 MTTACS--PHNPQCTADLGAQYITCTPHYAKKHQRFYDELLAYGVLRPLSSPIEGMV----------MKEGDCNFVAPQG  110 (342)
T ss_dssp             GCEEEC--SSCTTCEEESSCCCEEECSSHHHHTHHHHHHHHHTTSCEECCSCEETCC----------C--CCEEEECTTC
T ss_pred             eeeeec--CCCCCceEecCCceEEcCchHHHHHHHHHHHHHhCCCeecCchhhccee----------ccCCccceecCCC
Confidence            355554  33344679999999999987   88899999999999999986533211          1234678999999


Q ss_pred             chHHHHHHhcCCCCeeEcceeEeeEEeecCCCCeEEEccCCCccccccEEEeccCCCCCcchhhhcCCCCCCCCCcChHH
Q 020469           78 MNSICKALCHQPGVESKFGVGVGRFEWLEDKNLWSVSGLDGQSLGQFNGVVASDKNVVSPRFRDVTGRPPPLDLTFAPDL  157 (326)
Q Consensus        78 m~~l~~~La~~l~~~i~~~~~V~~i~~~~~~~~w~l~~~~g~~~~~~d~VVla~~~~pap~~~~ll~~~~~~~~~~~~~~  157 (326)
                      |++++++|++.++.+|+++++|++|++  ++++|.|.+++|+.+ .||.||+|   +|+|++.+|+....|   .+++..
T Consensus       111 ~~~l~~~l~~~~g~~i~~~~~V~~i~~--~~~~~~v~~~~g~~~-~ad~vV~A---~p~~~~~~ll~~~~~---~l~~~~  181 (342)
T 3qj4_A          111 ISSIIKHYLKESGAEVYFRHRVTQINL--RDDKWEVSKQTGSPE-QFDLIVLT---MPVPEILQLQGDITT---LISECQ  181 (342)
T ss_dssp             TTHHHHHHHHHHTCEEESSCCEEEEEE--CSSSEEEEESSSCCE-EESEEEEC---SCHHHHTTCBSTHHH---HSCHHH
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEE--cCCEEEEEECCCCEE-EcCEEEEC---CCHHHHHHHhccccc---ccCHHH
Confidence            999999999977888999999999998  778899998888654 89999999   899999998752110   234467


Q ss_pred             HHHhccCCCcceeeeeeecCCCCCC-CCCCceeecCCCceeeeeecCCCCCCC--CCCceEEEEeCHHHHHHhHhhcCCC
Q 020469          158 AVKLEEIPVNPCFALMLAFSEPLSS-IPVKGFSFQDSEVLSWAHCDSSKPGRS--ANSERWVLHSTADYARTVIAQTGLQ  234 (326)
Q Consensus       158 ~~~l~~~~~~~~~~v~l~~~~~~~~-~p~~g~~~~~~~~l~w~~~~sskpgr~--~~~~~~~~~~~~~~~~~~~~~~~~~  234 (326)
                      .+.++.++|.+|++|++.|+++++. .|++|+++++++++.|++++++||+|.  +++.+|++++++.|++++++.    
T Consensus       182 ~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~~~~~----  257 (342)
T 3qj4_A          182 RQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTYLEH----  257 (342)
T ss_dssp             HHHHHTCCBCCEEEEEEECSSCC--CCSCSEEECSSCSSEEEEEEHHHHTTCCCC-CCCEEEEEECHHHHHHTTTS----
T ss_pred             HHHHhcCCccccEEEEEEECCCCccCCceeeEEccCCcceEEEEccccCCCCCCCCCCceEEEECCHHHHHHhhcC----
Confidence            8889999999999999999987543 688999887766799999999999875  234589999999999998776    


Q ss_pred             CCchhhHHHHHHHHHHHHHhcCCCCCCcceeeeeecCCCCCCCCCCCCCCeee-ccCCCeEEeeCCCCCCChhHHHHHHH
Q 020469          235 KPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLW-DVKRRLAICGDFCVSPNVEGAILSGL  313 (326)
Q Consensus       235 ~~~~~~~~~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~A~p~~~~~~~~~~~~-~~~~~l~~aGD~~~g~~vegA~~SG~  313 (326)
                           +++++.+.++++|.++++..+.|.++.+|||+||+|++.......++. +..++|++||||+.|++||+|++||+
T Consensus       258 -----~~~~~~~~~~~~l~~~~g~~~~p~~~~v~rW~~a~p~~~~~~~~~~~~~~~~~~l~laGd~~~g~~v~~ai~sg~  332 (342)
T 3qj4_A          258 -----SIEDVQELVFQQLENILPGLPQPIATKCQKWRHSQVTNAAANCPGQMTLHHKPFLACGGDGFTQSNFDGCITSAL  332 (342)
T ss_dssp             -----CHHHHHHHHHHHHHHHSCSCCCCSEEEEEEETTCSBSSCCSSSCSCEEEETTTEEEECSGGGSCSSHHHHHHHHH
T ss_pred             -----CHHHHHHHHHHHHHHhccCCCCCceeeeccccccccccccCCCcceeEecCCccEEEEccccCCCCccHHHHHHH
Confidence                 578999999999998766677899999999999999986532233454 67789999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 020469          314 DAASKLTEIL  323 (326)
Q Consensus       314 ~aA~~l~~~l  323 (326)
                      ++|++|+..|
T Consensus       333 ~aa~~i~~~l  342 (342)
T 3qj4_A          333 CVLEALKNYI  342 (342)
T ss_dssp             HHHHHHTTC-
T ss_pred             HHHHHHHhhC
Confidence            9999997654
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Back     alignment and structure
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Back     alignment and structure
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Back     alignment and structure
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Back     alignment and structure
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Back     alignment and structure
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Back     alignment and structure
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Back     alignment and structure
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Back     alignment and structure
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Back     alignment and structure
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Back     alignment and structure
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Back     alignment and structure
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} Back     alignment and structure
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Back     alignment and structure
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Back     alignment and structure
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Back     alignment and structure
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Back     alignment and structure
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* Back     alignment and structure
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Back     alignment and structure
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Back     alignment and structure
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Back     alignment and structure
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Back     alignment and structure
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} Back     alignment and structure
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Back     alignment and structure
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Back     alignment and structure
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Back     alignment and structure
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Back     alignment and structure
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Back     alignment and structure
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Back     alignment and structure
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Back     alignment and structure
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Back     alignment and structure
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Back     alignment and structure
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Back     alignment and structure
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Back     alignment and structure
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Back     alignment and structure
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Back     alignment and structure
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Back     alignment and structure
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Back     alignment and structure
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Back     alignment and structure
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Back     alignment and structure
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Back     alignment and structure
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Back     alignment and structure
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Back     alignment and structure
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Back     alignment and structure
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Back     alignment and structure
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Back     alignment and structure
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* Back     alignment and structure
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Back     alignment and structure
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* Back     alignment and structure
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Back     alignment and structure
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Back     alignment and structure
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Back     alignment and structure
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Back     alignment and structure
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* Back     alignment and structure
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Back     alignment and structure
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Back     alignment and structure
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Back     alignment and structure
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Back     alignment and structure
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Back     alignment and structure
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} Back     alignment and structure
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Back     alignment and structure
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} Back     alignment and structure
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Back     alignment and structure
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Back     alignment and structure
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Back     alignment and structure
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Back     alignment and structure
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Back     alignment and structure
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Back     alignment and structure
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Back     alignment and structure
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Back     alignment and structure
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Back     alignment and structure
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Back     alignment and structure
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Back     alignment and structure
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Back     alignment and structure
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Back     alignment and structure
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Back     alignment and structure
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* Back     alignment and structure
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Back     alignment and structure
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Back     alignment and structure
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Back     alignment and structure
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Back     alignment and structure
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Back     alignment and structure
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} Back     alignment and structure
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Back     alignment and structure
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query326
d2ivda2108 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 98.67
d1seza2112 Protoporphyrinogen oxidase {Tobacco (Nicotiana tab 98.37
d2ivda1347 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 98.25
d2v5za1383 Monoamine oxidase B {Human (Homo sapiens) [TaxId: 97.75
d2iida1370 L-aminoacid oxidase {Malayan pit viper (Calloselas 97.53
d2dw4a2449 Lysine-specific histone demethylase 1, LSD1 {Human 97.17
d2bcgg1297 Guanine nucleotide dissociation inhibitor, GDI {Ba 97.03
d1seza1373 Protoporphyrinogen oxidase {Tobacco (Nicotiana tab 97.03
d2v5za2112 Monoamine oxidase B {Human (Homo sapiens) [TaxId: 96.86
d1b5qa1347 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 96.36
d1d5ta1336 Guanine nucleotide dissociation inhibitor, GDI {Co 96.07
d1aoga2117 Trypanothione reductase {Trypanosoma cruzi [TaxId: 95.88
d1onfa2117 Glutathione reductase {Plasmodium falciparum [TaxI 95.84
d1m6ia2137 Apoptosis-inducing factor (AIF) {Human (Homo sapie 95.58
d2iida2113 L-aminoacid oxidase {Malayan pit viper (Calloselas 95.49
d2dw4a3109 Lysine-specific histone demethylase 1, LSD1 {Human 95.24
d1seza1373 Protoporphyrinogen oxidase {Tobacco (Nicotiana tab 95.2
d2gv8a1335 Flavin-dependent monoxygenase SPBP16F5.08c {Schizo 95.04
d1w4xa1298 Phenylacetone monooxygenase {Thermobifida fusca [T 94.91
d1b5qa2112 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 94.74
d1gesa2116 Glutathione reductase {Escherichia coli [TaxId: 56 94.71
d2gf3a1281 Sarcosine oxidase {Bacillus sp., strain b0618 [Tax 94.7
d1feca2117 Trypanothione reductase {Crithidia fasciculata [Ta 94.31
d2iida1370 L-aminoacid oxidase {Malayan pit viper (Calloselas 93.62
d3lada2119 Dihydrolipoamide dehydrogenase {Azotobacter vinela 93.54
d1q1ra2133 Putidaredoxin reductase {Pseudomonas putida [TaxId 93.43
d1ryia1276 Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} 93.13
d1v59a2122 Dihydrolipoamide dehydrogenase {Baker's yeast (Sac 93.12
d2i0za1251 Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] 92.15
d2gqfa1253 Hypothetical protein HI0933 {Haemophilus influenza 92.02
d1nhpa2123 NADH peroxidase {Enterococcus faecalis [TaxId: 135 91.99
d2ivda1347 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 91.9
d1pj5a2305 N,N-dimethylglycine oxidase {Arthrobacter globifor 91.54
d1d7ya2121 NADH-dependent ferredoxin reductase, BphA4 {Pseudo 90.98
d1ebda2117 Dihydrolipoamide dehydrogenase {Bacillus stearothe 90.88
d1dxla2123 Dihydrolipoamide dehydrogenase {Garden pea (Pisum 89.85
d2v5za1383 Monoamine oxidase B {Human (Homo sapiens) [TaxId: 87.88
d1mo9a2121 NADH-dependent 2-ketopropyl coenzyme M oxidoreduct 86.88
d1ojta2125 Dihydrolipoamide dehydrogenase {Neisseria meningit 86.58
d1b5qa1347 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 84.41
d1lvla2115 Dihydrolipoamide dehydrogenase {Pseudomonas putida 84.38
d1m6ia1213 Apoptosis-inducing factor (AIF) {Human (Homo sapie 83.69
d3grsa2125 Glutathione reductase {Human (Homo sapiens) [TaxId 83.63
>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.67  E-value=1.2e-08  Score=75.33  Aligned_cols=103  Identities=17%  Similarity=0.175  Sum_probs=73.2

Q ss_pred             CCcceeeeeeecCCCCCCC-CCCceeecCC--CceeeeeecCCC-CCCCCCC-ceEEEEeCHHHHHHhHhhcCCCCCchh
Q 020469          165 PVNPCFALMLAFSEPLSSI-PVKGFSFQDS--EVLSWAHCDSSK-PGRSANS-ERWVLHSTADYARTVIAQTGLQKPSEA  239 (326)
Q Consensus       165 ~~~~~~~v~l~~~~~~~~~-p~~g~~~~~~--~~l~w~~~~ssk-pgr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (326)
                      .|.|+.+|.++|+++.... .-.|++++..  ..+.-+.++|+| |+|.+.+ ..++++....+..+..+.         
T Consensus         1 ~Ya~vavV~l~~~~~~~~~~~GfG~LVP~~e~~~~lg~~f~S~~fp~r~p~~~~llrv~~Gg~~~~~~~~~---------   71 (108)
T d2ivda2           1 AYAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQ---------   71 (108)
T ss_dssp             CBCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGGGGGS---------
T ss_pred             CCCCEEEEEEEEcHHHCCCCCceEEEccCCCCCeEEEEEEEccccccccCCCCEEEEEEeCCCCCcccccC---------
Confidence            3899999999998754322 3456666542  234457788888 8887643 445677665554444443         


Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCcceeeeeecCCCCCC
Q 020469          240 TLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPA  276 (326)
Q Consensus       240 ~~~~v~~~l~~~~~~~~~~~~~p~~~~~~rW~~A~p~  276 (326)
                      +++++.+.+++++.++++....|.+..++||+.|+||
T Consensus        72 ~d~~l~~~a~~dL~~~lgi~~~P~~~~v~rw~~aiPQ  108 (108)
T d2ivda2          72 DEDALAALAREELKALAGVTARPSFTRVFRWPLGIPQ  108 (108)
T ss_dssp             CHHHHHHHHHHHHHHHHCCCSCCSEEEEEEESSCCBC
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCCcEEEeeECCCCcCc
Confidence            5688889999999986554568999999999999986
>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Back     information, alignment and structure
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Back     information, alignment and structure
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Back     information, alignment and structure
>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Back     information, alignment and structure
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Back     information, alignment and structure
>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Back     information, alignment and structure
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Back     information, alignment and structure
>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Back     information, alignment and structure
>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Back     information, alignment and structure
>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Back     information, alignment and structure
>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure