Citrus Sinensis ID: 020478

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MEEATGNHSISDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSLPIEEKDERPTNVSNGSRGMGKLEKRKVYHSN
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccHHccccccccccccccccccHcccccHHHHccccccccccccccEccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHccEccccHHHHHHHHHHHHHHccccccccccHHHHHHccccccccccccccccccccccccccEEcccc
Coil and Loop (DISEMBL)
meeatgnhsisdervKKEAPQLAALLREMKEGLDKLRSKVQSLITKvkgnnyptvdgiSYLEAKHLLLLNYCQSIVYYLLRKAkglsieghpVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTsvrvggnaiepvnpsanesgepqktedllkyrpnpdmlvsktdmttedgagvykppkfapasmdedktSRKERNALRKEKETLRQARQSTFMRELVNDlegrpeevREVVGVESRELTRYKEMMEERARQEEElftrapltKMEKKKMKHLKKSRngllglteSFYDEikslpieekderptnvsngsrgmgklekrkvyhsn
Flexible Loop (DISEMBL)
meeatgnhsisdervkkeAPQLAALLREMKEGLDKLRSKVQSlitkvkgnnyptVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLtsvrvggnaiepvnpsanesgepqktedllkyrpnpDMLVSKTdmttedgagvykppkfapasmdedktsrkernalrkeketlrqarqstfmrelvndlegrpeevrevvgvesreltrykemmeerarqeeelftrapltkmekkkmkhlkksrngllgltesFYDEIKslpieekderptnvsngsrgmgklekrkvyhsn
Low Complexity Region (SEG)
MEEATGNHSISDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLegrpeevrevvgvesreLTRYKemmeerarqeeeLFTRAPLTkmekkkmkhlkkSRNGLLGLTESFYDEIKSLPIEEKDERPTNVSNGSRGMGKLEKRKVYHSN
Disordered region (IsUnstruct)
**************************************KVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGG**********************************************************************************************************************************************************L***FY*************************************
Disordered Region (DISOPRED)
********************QLAALLREMKEGLDKLRSKVQS**************GISYLEAKHLLLLNYCQSIVYYLLR**************SLVEIRLFLEKIRPIDRKLQYQIQKL**********************************************************************************************************************************QEEELF****************************SFYD************************************
Disordered Region (DISEMBL)
*************RVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPS********KTEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAP**********************LRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAPLTKM**********SRNGLLGLTESFYDEIKSLPIEEKDERPTNVSNGSRGMGKLE********
Disordered Region (DISPRO)
*********ISDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVG**********************LLKYRPNPDMLVS*********AGVYKPPKFAPASMDEDKTSRKER**LR****T****RQSTFMRELVNDLEGRPEEVREV**************MEERARQEEELFTRAPLTKMEKKKMK********LLGLTESFYDEIKSLP******************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEATGNHSISDERVKKEAPQLAALxxxxxxxxxxxxxxxxxxxxxVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTxxxxxxxxxxxxxxxxxxxxxTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSLPIEEKDERPTNVSNGSRGMGKLEKRKVYHSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
Q2KII6	315	Neuroguidin OS=Bos taurus	yes	no	0.824	0.850	0.317	7e-30
Q28IV8	316	Neuroguidin OS=Xenopus tr	yes	no	0.793	0.816	0.315	7e-28
Q5M985	316	Neuroguidin-B (Fragment)	N/A	no	0.787	0.810	0.317	1e-27
Q4KLC4	317	Neuroguidin-A OS=Xenopus	N/A	no	0.787	0.807	0.317	1e-27
Q8NEJ9	315	Neuroguidin OS=Homo sapie	yes	no	0.787	0.812	0.304	1e-26
Q9DB96	315	Neuroguidin OS=Mus muscul	yes	no	0.756	0.780	0.307	1e-26
Q6PFJ1	315	Neuroguidin OS=Danio reri	yes	no	0.769	0.793	0.303	5e-25
Q6AXX4	470	Something about silencing	no	no	0.473	0.327	0.296	1e-14
Q9JI13	469	Something about silencing	no	no	0.338	0.234	0.327	1e-12
Q9NQZ2	479	Something about silencing	no	no	0.341	0.231	0.333	4e-11

>sp|Q2KII6|NGDN_BOVIN Neuroguidin OS=Bos taurus GN=NGDN PE=2 SV=1

 Score =  131 bits (329), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 153/315 (48%), Gaps = 47/315 (14%)

Query: 13  ERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYC 72
           E ++ + P   ALL+ ++E +  + ++VQ+L  KV+   YPT  G+S LE K  LLL Y 
Sbjct: 5   EVLESDLPNAVALLKNLQEQVMAVTAQVQTLTKKVQAKAYPTEKGLSLLEVKDQLLLMYL 64

Query: 73  QSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIE 132
             + + +L KA G S++GHP V  LVEIR  LEK+RP+D+KL+YQI KL    V G+  E
Sbjct: 65  MDLSHLILDKASGGSLQGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSE 124

Query: 133 PVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTT----------------EDGAGV-- 174
                           D L+++P+P  ++SK                     + G G   
Sbjct: 125 ---------------NDPLRFKPHPSNMMSKLSSEDEEEDEAEEGQSGASGKKSGKGTAK 169

Query: 175 -YKPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVG 233
            Y PP+  P   DE +  R E+  L + K   R+A  S+ +REL       PEE+R+   
Sbjct: 170 KYVPPRLVPVHYDETEAER-EKKRLERAK---RRALSSSVIRELKEQYSDAPEEIRD--- 222

Query: 234 VESRELTRYKEMMEERARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKS 293
                +TR  +  + R   EE +  R  ++K EK + K      + L  LT   + +I +
Sbjct: 223 ARHPHVTRQSQEDQHRINYEESMMVRLSVSKREKGRRKRANVMSSQLHSLT--HFSDISA 280

Query: 294 L----PIEEKDERPT 304
           L    P  ++D+ PT
Sbjct: 281 LTGGTPHLDEDQNPT 295

Involved in the translational repression of cytoplasmic polyadenylation element (CPE)-containing mRNAs.
Bos taurus (taxid: 9913)

>sp|Q28IV8|NGDN_XENTR Neuroguidin OS=Xenopus tropicalis GN=ngdn PE=2 SV=1

 Score =  124 bits (312), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 146/301 (48%), Gaps = 43/301 (14%)

Query: 13  ERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYC 72
           E + ++ P    L R +++ + K+ + VQ+L  KV+   Y T  G+S+LE K  LLL Y 
Sbjct: 6   EIILEDVPASVNLFRTLQDQVTKVTAHVQALTQKVRSGIYNTDKGLSFLELKDQLLLFYL 65

Query: 73  QSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIE 132
           Q + + +L K  G SI+G+P +  LVE+R  LEK+RPID+KL+YQI KL    V G+  E
Sbjct: 66  QDLTHLMLEKTNGKSIKGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVRASVTGSLGE 125

Query: 133 PVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDM-------TTEDGAGV----------- 174
                           D L+++PNP  L+SK          + ED A             
Sbjct: 126 ---------------NDPLRFKPNPQNLISKLSEADEGESDSGEDCAESGNAKKPQSKVK 170

Query: 175 -YKPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVG 233
            Y PP+ AP   D+ +  R+ R   R +K  L     S+ +REL       PEE+RE   
Sbjct: 171 KYIPPRLAPVHYDDTEAEREHRIIERAKKLAL----SSSTIRELKEQYSDAPEEIRE--- 223

Query: 234 VESRELTRYKEMMEERARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKS 293
             +  + R+ +  + R   EE +  R  +T+ EK + K +    + L  LT   + +I +
Sbjct: 224 GRAYHMMRHDKEEQHRINHEESMMVRLNMTRKEKARKKRVLAMTSQLNSLTH--FSDISA 281

Query: 294 L 294
           L
Sbjct: 282 L 282

May inhibit mRNA translation.

Xenopus tropicalis (taxid: 8364)

>sp|Q5M985|NGDNB_XENLA Neuroguidin-B (Fragment) OS=Xenopus laevis GN=ngdn-b PE=1 SV=1

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 147/299 (49%), Gaps = 43/299 (14%)

Query: 15  VKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQS 74
           + ++ P    L   +++ + K+ + VQ L  KV+ + Y T  G+S+LE K  LLL Y Q 
Sbjct: 7   ILEDVPGSVNLFNTLQDQITKVTAHVQDLTQKVRSSIYNTDKGLSFLELKDQLLLFYLQD 66

Query: 75  IVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPV 134
           + + +L K  G SI+G+P +  LVE+R  LEK+RPID+KL+YQI KL    V G+  E  
Sbjct: 67  LTHLMLEKTNGKSIKGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVKAAVTGSLGE-- 124

Query: 135 NPSANESGEPQKTEDLLKYRPNPDMLVSKTDM-------TTEDGA--GV----------Y 175
                         D L+++PNP  L+SK          + E+GA  GV          Y
Sbjct: 125 -------------NDPLRFKPNPQNLMSKLSEPDERESDSGEEGAEGGVAKKPQSKVKRY 171

Query: 176 KPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVE 235
            PP+ AP   D+ +  R+ R   R +K  L     S+ +REL       PEE+RE     
Sbjct: 172 IPPRLAPVHYDDTEAEREHRIVERAKKLAL----SSSTIRELKEQYSDAPEEIRE---GR 224

Query: 236 SRELTRYKEMMEERARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSL 294
           +  + R+ +  + R   EE +  R  +T+ EK + K +    + L  LT   + +I +L
Sbjct: 225 AYHMMRHDKEEQHRINHEESMMVRLNMTRKEKARKKRVLSMTSQLNSLTH--FSDISAL 281

May inhibit mRNA translation.

Xenopus laevis (taxid: 8355)

>sp|Q4KLC4|NGDNA_XENLA Neuroguidin-A OS=Xenopus laevis GN=ngdn-a PE=1 SV=1

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 146/299 (48%), Gaps = 43/299 (14%)

Query: 15  VKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQS 74
           + ++ P    L   +++ + K+ + VQ L  KV+   Y T  G+S+LE K  LLL Y Q 
Sbjct: 8   ILEDVPGSVNLFNTLQDQITKVTAHVQDLTQKVRSGIYNTDKGLSFLELKDQLLLFYLQD 67

Query: 75  IVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPV 134
           + + +L K  G SI+G+P +  LVE+R  LEK+RPID+KL+YQI KL    V G+  E  
Sbjct: 68  LTHLMLEKTNGKSIKGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVKAAVTGSLGE-- 125

Query: 135 NPSANESGEPQKTEDLLKYRPNPDMLVSKTDM-------TTEDGA--GV----------Y 175
                         D L+++PNP  L+SK          + E+GA  GV          Y
Sbjct: 126 -------------NDPLRFKPNPQNLMSKLSEPDERESDSGEEGAEGGVAKKPQSKVKRY 172

Query: 176 KPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVE 235
            PP+ AP   D+ +  R+ R   R +K  L     S+ +REL       PEE+RE     
Sbjct: 173 IPPRLAPVHYDDTEAEREHRIVERAKKLAL----SSSTIRELKEQYSDAPEEIRE---GR 225

Query: 236 SRELTRYKEMMEERARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSL 294
           +  + R+ +  + R   EE +  R  +T+ EK + K +    + L  LT   + +I +L
Sbjct: 226 AYHMMRHDKEEQHRINHEESMMVRLNMTRKEKARKKRVLSMTSQLNSLTH--FSDISAL 282

May inhibit mRNA translation.

Xenopus laevis (taxid: 8355)

>sp|Q8NEJ9|NGDN_HUMAN Neuroguidin OS=Homo sapiens GN=NGDN PE=1 SV=1

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 144/299 (48%), Gaps = 43/299 (14%)

Query: 15  VKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQS 74
           ++ + P    LL+ ++E +  + ++V+SL  KV+   YPT  G+S+LE K  LLL Y   
Sbjct: 7   LESDLPSAVTLLKNLQEQVMAVTAQVKSLTQKVQAGAYPTEKGLSFLEVKDQLLLMYLMD 66

Query: 75  IVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPV 134
           + + +L KA G S++GH  V  LVEIR  LEK+RP+D+KL+YQI KL    V G+  E  
Sbjct: 67  LTHLILDKASGGSLQGHDAVLRLVEIRTVLEKLRPLDQKLKYQIDKLIKTAVTGSLSE-- 124

Query: 135 NPSANESGEPQKTEDLLKYRPNPDMLVSK-------------------TDMTTEDGAGVY 175
                         D L+++P+P  ++SK                      + +  +  Y
Sbjct: 125 -------------NDPLRFKPHPSNMMSKLSSEDEEEDEAEDDQSEASGKKSVKGVSKKY 171

Query: 176 KPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVE 235
            PP+  P   DE +  R E+  L + K   R+A  S+ +REL       PEE+R+     
Sbjct: 172 VPPRLVPVHYDETEAER-EKKRLERAK---RRALSSSVIRELKEQYSDAPEEIRD---AR 224

Query: 236 SRELTRYKEMMEERARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSL 294
              +TR  +  + R   EE +  R  ++K EK + K      + L  LT   + +I +L
Sbjct: 225 HPHVTRQSQEDQHRINYEESMMVRLSVSKREKGRRKRANVMSSQLHSLTH--FSDISAL 281

Involved in the translational repression of cytoplasmic polyadenylation element (CPE)-containing mRNAs.

Homo sapiens (taxid: 9606)

>sp|Q9DB96|NGDN_MOUSE Neuroguidin OS=Mus musculus GN=Ngdn PE=1 SV=1

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 140/289 (48%), Gaps = 43/289 (14%)

Query: 25  LLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAK 84
           LL+ ++E +  + +++Q+L TKV+   Y T  G+S+LE K  LLL Y   + + +L KA 
Sbjct: 17  LLKNLQEQVMAVTAQIQALTTKVRAGTYSTEKGLSFLEVKDQLLLMYLMDLSHLILDKAS 76

Query: 85  GLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEP 144
           G S++GHP V  LVEIR  LEK+RP+D+KL+YQI KL    V G+  E            
Sbjct: 77  GASLQGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSE------------ 124

Query: 145 QKTEDLLKYRPNPDMLV-------------------SKTDMTTEDGAGVYKPPKFAPASM 185
               D L+++P+P  +V                   +    + +  A  Y PP+  P   
Sbjct: 125 ---NDPLRFKPHPSNMVSKLSSEDEEESEAEEGQSEASGKKSAKGSAKKYVPPRLVPVHY 181

Query: 186 DEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEM 245
           DE +  R+++  L K K   R+A  S+ +REL       PEE+R+        +TR  + 
Sbjct: 182 DETEAEREQKR-LEKAK---RRALSSSVIRELKEQYSDAPEEIRD---ARHPHVTRQSQE 234

Query: 246 MEERARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSL 294
            + R   EE +  R  ++K EK   +      + L  LT   + +I +L
Sbjct: 235 DQHRVNYEESMMVRLSVSKREKGLRRRASAMSSQLHSLTH--FSDISAL 281

Inhibits mRNA translation in a cytoplasmic polyadenylation element (CPE)-dependent manner.

Mus musculus (taxid: 10090)

>sp|Q6PFJ1|NGDN_DANRE Neuroguidin OS=Danio rerio GN=ngdn PE=2 SV=1

 Score =  115 bits (287), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 145/297 (48%), Gaps = 47/297 (15%)

Query: 9   SISDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLL 68
           ++ ++ + ++ P    LL  + E +  + S V+ LI KV+   Y T  G+S+L+ ++ LL
Sbjct: 5   AVGNDVIDRDLPTAVRLLNSLTEQIVSVTSHVRELIKKVREKAYQTSKGLSFLDLRYHLL 64

Query: 69  LNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGG 128
           L Y Q I + +  K +G S++ +  +  LV IR  LEK+RP+D+KL+YQI KL    V G
Sbjct: 65  LFYLQDITHLISLKTEGESLKDNSAIHRLVTIRTVLEKMRPLDQKLKYQIDKLVRTAVTG 124

Query: 129 NAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSK---TDMTTEDGAGV----------- 174
           +  E                D L +RPNP  LVSK   ++ + +DG G            
Sbjct: 125 SLSE---------------NDPLHFRPNPQSLVSKLSESEDSDDDGVGGKTKEQKEPSGG 169

Query: 175 --YKPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVV 232
             Y PP+ AP   D D T   +R   R EK+  R A +S+ ++EL       PEE+R   
Sbjct: 170 RRYVPPRIAPMHYDGDLTE-ADRQKERVEKQK-RAALRSSVIQELRQQYSDAPEEIR--- 224

Query: 233 GVESRELTRYKEMMEERARQ--EEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESF 287
             + R+    ++  EE  R+  EE +  R   T+ +K +       + G++G+T   
Sbjct: 225 --DRRDFQTDRQGREELNRKNYEESMMVRLSTTRDQKLR-------KRGMMGMTSQL 272

May inhibit mRNA translation.

Danio rerio (taxid: 7955)

>sp|Q6AXX4|SAS10_RAT Something about silencing protein 10 OS=Rattus norvegicus GN=Utp3 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 93/172 (54%), Gaps = 18/172 (10%)

Query: 15  VKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQS 74
           ++KE+P+L  L+ ++K  L +++ +++ LI  V+    P   G  YL+ K+ L LNYC +
Sbjct: 215 LRKESPELLELIEDLKVKLTEVKDELEPLIQLVEKGVIPPGKGSQYLKTKYNLYLNYCAN 274

Query: 75  IVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPV 134
           I +YL+ KA+ +   GHPV++ LV  R  + K+  +D+KL  +I+ L + + G    + +
Sbjct: 275 ISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKEGAGKKD-L 333

Query: 135 NPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMD 186
           NP A           L K +P       K+   T+  A + + P+F  A+++
Sbjct: 334 NPKAK----------LTKTKP-------KSAKQTDVNADLTEEPEFDEAALE 368

Essential for gene silencing: has a role in the structure of silenced chromatin. Plays a role in the developing brain.

Rattus norvegicus (taxid: 10116)

>sp|Q9JI13|SAS10_MOUSE Something about silencing protein 10 OS=Mus musculus GN=Utp3 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 67/110 (60%)

Query: 19  APQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYY 78
           +P+L  L+ +++  L +++ +++ L+  V+    PT  G  YL+ K+ L LNYC +I +Y
Sbjct: 219 SPELLELIEDLQAKLTEVKDELEPLLQLVEKGVIPTGRGSEYLKTKYNLYLNYCANISFY 278

Query: 79  LLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGG 128
           L+ KA+ +   GHPV++ LV  R  + K+  +D+KL  +I+ L + + G 
Sbjct: 279 LILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKDGA 328

Essential for gene silencing: has a role in the structure of silenced chromatin. Plays a role in the developing brain.

Mus musculus (taxid: 10090)

>sp|Q9NQZ2|SAS10_HUMAN Something about silencing protein 10 OS=Homo sapiens GN=UTP3 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 69/111 (62%)

Query: 15  VKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQS 74
           ++KE+P+L  L+ ++K  L +++ +++ L+  V+    P   G  YL  K+ L LNYC +
Sbjct: 219 LRKESPELLELIEDLKVKLTEVKDELEPLLELVEQGIIPPGKGSQYLRTKYNLYLNYCSN 278

Query: 75  IVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVR 125
           I +YL+ KA+ +   GHPV++ LV  R  + K+  +D+KL  +I+ L +++
Sbjct: 279 ISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTLK 329

Essential for gene silencing: has a role in the structure of silenced chromatin. Plays a role in the developing brain.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
147777239	807	hypothetical protein VITISV_019017 [Viti	0.963	0.387	0.725	1e-127
147773895	340	hypothetical protein VITISV_005614 [Viti	0.935	0.894	0.750	1e-126
359492964	320	PREDICTED: neuroguidin-like [Vitis vinif	0.938	0.953	0.731	1e-126
225454220	316	PREDICTED: neuroguidin-B-like [Vitis vin	0.913	0.939	0.757	1e-125
297745286	362	unnamed protein product [Vitis vinifera]	0.913	0.820	0.757	1e-125
224084538	318	predicted protein [Populus trichocarpa]	0.963	0.984	0.645	1e-108
449436946	312	PREDICTED: neuroguidin-like [Cucumis sat	0.938	0.977	0.652	1e-104
356510136	333	PREDICTED: neuroguidin-like [Glycine max	0.941	0.918	0.626	1e-104
255572870	358	something about silencing protein sas10,	0.923	0.837	0.666	1e-103
356518441	381	PREDICTED: neuroguidin-like [Glycine max	0.950	0.811	0.627	1e-103

>gi|147777239|emb|CAN72154.1| hypothetical protein VITISV_019017 [Vitis vinifera]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/324 (72%), Positives = 272/324 (83%), Gaps = 11/324 (3%)

Query: 1   MEEATGNHSISDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISY 60
           MEE   N+ I    ++KEA  LAA+L+EMKEGLD +R KVQ+L  KVK +++PT DG+SY
Sbjct: 450 MEEDAKNNEI----IRKEASHLAAVLKEMKEGLDAVRGKVQALTAKVKADHFPTADGMSY 505

Query: 61  LEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQK 120
           LEAKHLLL+NYCQS+VYYLLRKAKG SIEGHPVV+SLVE+RLFLEKIRPID+KLQYQIQK
Sbjct: 506 LEAKHLLLINYCQSLVYYLLRKAKGFSIEGHPVVRSLVEMRLFLEKIRPIDKKLQYQIQK 565

Query: 121 LTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTTEDG---AGVYKP 177
           LT  RV GNA+E V PS  +S  P  TEDLLKYRPNPDMLVSKTD T EDG    GVY+P
Sbjct: 566 LT--RVTGNAVEKVGPSEKDSETPN-TEDLLKYRPNPDMLVSKTDTTFEDGVGPVGVYRP 622

Query: 178 PKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESR 237
           PKFAP SM+EDK S+ E+NALRKEKET+RQARQST++REL++DLEGRPEEVRE+VG ESR
Sbjct: 623 PKFAPTSMEEDKISKHEKNALRKEKETVRQARQSTYVRELMDDLEGRPEEVREIVGTESR 682

Query: 238 ELTRYKEMMEERARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSLPIE 297
           EL RYKE ME+RARQEEELFTRAPLT+MEKKK KHL+KSRNGLLGLT+SFYDEIK+LP+E
Sbjct: 683 ELIRYKEKMEQRARQEEELFTRAPLTRMEKKKEKHLRKSRNGLLGLTDSFYDEIKTLPLE 742

Query: 298 EK-DERPTNVSNGSRGMGKLEKRK 320
           E   E+ T  +N S G  K +KRK
Sbjct: 743 EDFGEKTTGFNNSSSGGRKFKKRK 766

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773895|emb|CAN69547.1| hypothetical protein VITISV_005614 [Vitis vinifera]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/309 (75%), Positives = 266/309 (86%), Gaps = 5/309 (1%)

Query: 13  ERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYC 72
           ERV+KEA QL A+L+EMKEGLD +RSKVQ+L  KVK +++PT DG+SYLEAKHLLLL+YC
Sbjct: 9   ERVRKEASQLVAVLKEMKEGLDAVRSKVQALTAKVKADHFPTADGMSYLEAKHLLLLDYC 68

Query: 73  QSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIE 132
           QS+VYYLLRKAKGLSIEGHPVV SLVEIRLFLEKIRPID+KLQYQIQKLT  RV GNA+E
Sbjct: 69  QSLVYYLLRKAKGLSIEGHPVVHSLVEIRLFLEKIRPIDKKLQYQIQKLT--RVTGNAVE 126

Query: 133 PVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTTEDG-AGVYKPPKFAPASMDEDKTS 191
            V+ S  +  E Q TEDLLKYRPNPDML+SKTDMT+E G  GVY+PPKFAPASM+EDK S
Sbjct: 127 KVS-SGEKDSETQNTEDLLKYRPNPDMLISKTDMTSEGGVGGVYRPPKFAPASMEEDKMS 185

Query: 192 RKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERAR 251
           ++ERN LRKEKETLRQARQS ++REL++DLEGRPEEVRE+VG ESREL RYKE ME+RAR
Sbjct: 186 KQERNVLRKEKETLRQARQSAYVRELMDDLEGRPEEVREIVGTESRELIRYKEKMEQRAR 245

Query: 252 QEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSLPIEEKDERPTNVSNGSR 311
           QEEELFTRAPLT+ EKKK KHL+KSRNGLLGLT+SFYDEIK+LP+EE      +  N S 
Sbjct: 246 QEEELFTRAPLTRTEKKKEKHLRKSRNGLLGLTDSFYDEIKTLPMEEDFGEKMSGFNNSG 305

Query: 312 GMGKLEKRK 320
           G  K +KRK
Sbjct: 306 GR-KFKKRK 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492964|ref|XP_002283732.2| PREDICTED: neuroguidin-like [Vitis vinifera] gi|302142084|emb|CBI19287.3| unnamed protein product [Vitis vinifera]

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/316 (73%), Positives = 267/316 (84%), Gaps = 11/316 (3%)

Query: 1   MEEATGNHSISDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISY 60
           MEE   N+ I    ++KEA  LAA+L+EMKEGLD +R KVQ+L  KVK +++PT DG+SY
Sbjct: 1   MEEDAKNNEI----IRKEASHLAAVLKEMKEGLDAVRGKVQALTAKVKADHFPTADGMSY 56

Query: 61  LEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQK 120
           LEAKHLLL+NYCQS+VYYLLRKAKG SIEGHPVV+SLVE+RLFLEKIRPID+KLQYQIQK
Sbjct: 57  LEAKHLLLINYCQSLVYYLLRKAKGFSIEGHPVVRSLVEMRLFLEKIRPIDKKLQYQIQK 116

Query: 121 LTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTTEDGAG---VYKP 177
           LT  RV GNA+E V PS  +S  P  TEDLLKYRPNPDMLVSKTD T EDG G   VY+P
Sbjct: 117 LT--RVTGNAVEKVGPSEKDSETPN-TEDLLKYRPNPDMLVSKTDTTFEDGVGPVGVYRP 173

Query: 178 PKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESR 237
           PKFAP SM+EDK S+ E+NALRKEKET+RQARQST++REL++DLEGRPEEVRE+VG ESR
Sbjct: 174 PKFAPTSMEEDKISKHEKNALRKEKETVRQARQSTYVRELMDDLEGRPEEVREIVGTESR 233

Query: 238 ELTRYKEMMEERARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSLPIE 297
           EL RYKE ME+RARQEEELFTRAPLT+MEKKK KHL+KSRNGLLGLT+SFYDEIK+LP+E
Sbjct: 234 ELIRYKEKMEQRARQEEELFTRAPLTRMEKKKEKHLRKSRNGLLGLTDSFYDEIKTLPLE 293

Query: 298 EK-DERPTNVSNGSRG 312
           E   E+ T  +N S G
Sbjct: 294 EDFGEKTTGFNNSSSG 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454220|ref|XP_002274529.1| PREDICTED: neuroguidin-B-like [Vitis vinifera]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/301 (75%), Positives = 261/301 (86%), Gaps = 4/301 (1%)

Query: 13  ERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYC 72
           ERV+KEA QL A+L+EMKEGLD +RSKVQ+L  KVK +++PT DG+SYLEAKHLLLL+YC
Sbjct: 9   ERVRKEASQLVAVLKEMKEGLDAVRSKVQALTAKVKADHFPTADGMSYLEAKHLLLLDYC 68

Query: 73  QSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIE 132
           QS+VYYLLRKAKGLSIEGHPVV SLVEIRLFLEKIRPID+KLQYQIQKLT  RV GNA+E
Sbjct: 69  QSLVYYLLRKAKGLSIEGHPVVHSLVEIRLFLEKIRPIDKKLQYQIQKLT--RVTGNAVE 126

Query: 133 PVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTTEDG-AGVYKPPKFAPASMDEDKTS 191
            V+ S  +  E Q TEDLLKYRPNPDML+SKTDMT+E G  GVY+PPKFAPASM+EDK S
Sbjct: 127 KVS-SGEKDSETQNTEDLLKYRPNPDMLISKTDMTSEGGVGGVYRPPKFAPASMEEDKMS 185

Query: 192 RKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERAR 251
           ++ERN LRKEKETLRQARQS ++REL++DLEGRPEEVRE+VG ESREL RYKE ME+RAR
Sbjct: 186 KQERNVLRKEKETLRQARQSAYVRELMDDLEGRPEEVREIVGTESRELIRYKEKMEQRAR 245

Query: 252 QEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSLPIEEKDERPTNVSNGSR 311
           QEEELFTRAPLT+ EKKK KHL+KSRNGLLGLT+SFYDEIK+LP+EE      +  N S 
Sbjct: 246 QEEELFTRAPLTRTEKKKEKHLRKSRNGLLGLTDSFYDEIKTLPMEEDFGEKMSGFNNSG 305

Query: 312 G 312
           G
Sbjct: 306 G 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745286|emb|CBI40366.3| unnamed protein product [Vitis vinifera]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/301 (75%), Positives = 261/301 (86%), Gaps = 4/301 (1%)

Query: 13  ERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYC 72
           ERV+KEA QL A+L+EMKEGLD +RSKVQ+L  KVK +++PT DG+SYLEAKHLLLL+YC
Sbjct: 55  ERVRKEASQLVAVLKEMKEGLDAVRSKVQALTAKVKADHFPTADGMSYLEAKHLLLLDYC 114

Query: 73  QSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIE 132
           QS+VYYLLRKAKGLSIEGHPVV SLVEIRLFLEKIRPID+KLQYQIQKLT  RV GNA+E
Sbjct: 115 QSLVYYLLRKAKGLSIEGHPVVHSLVEIRLFLEKIRPIDKKLQYQIQKLT--RVTGNAVE 172

Query: 133 PVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTTEDG-AGVYKPPKFAPASMDEDKTS 191
            V+ S  +  E Q TEDLLKYRPNPDML+SKTDMT+E G  GVY+PPKFAPASM+EDK S
Sbjct: 173 KVS-SGEKDSETQNTEDLLKYRPNPDMLISKTDMTSEGGVGGVYRPPKFAPASMEEDKMS 231

Query: 192 RKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERAR 251
           ++ERN LRKEKETLRQARQS ++REL++DLEGRPEEVRE+VG ESREL RYKE ME+RAR
Sbjct: 232 KQERNVLRKEKETLRQARQSAYVRELMDDLEGRPEEVREIVGTESRELIRYKEKMEQRAR 291

Query: 252 QEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSLPIEEKDERPTNVSNGSR 311
           QEEELFTRAPLT+ EKKK KHL+KSRNGLLGLT+SFYDEIK+LP+EE      +  N S 
Sbjct: 292 QEEELFTRAPLTRTEKKKEKHLRKSRNGLLGLTDSFYDEIKTLPMEEDFGEKMSGFNNSG 351

Query: 312 G 312
           G
Sbjct: 352 G 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084538|ref|XP_002307330.1| predicted protein [Populus trichocarpa] gi|118483580|gb|ABK93687.1| unknown [Populus trichocarpa] gi|222856779|gb|EEE94326.1| predicted protein [Populus trichocarpa]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/322 (64%), Positives = 257/322 (79%), Gaps = 9/322 (2%)

Query: 1   MEEATGNHSISDERVK-KEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGIS 59
           ME AT    I   +VK KEAPQLA +L+E+KEGLD +R+KVQ+L  KVK NN+PT +GIS
Sbjct: 1   MEAATKEEQI---QVKEKEAPQLATVLKEIKEGLDIVRNKVQALTAKVKTNNFPTTEGIS 57

Query: 60  YLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQ 119
           YLEAKHLLLL+YCQS+V+YL+RKAKGLSIE HPVV+SLVEIRLFLEKIR ID+KL+YQIQ
Sbjct: 58  YLEAKHLLLLSYCQSLVFYLIRKAKGLSIEKHPVVRSLVEIRLFLEKIRMIDKKLEYQIQ 117

Query: 120 KLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPK 179
           KLT  R  G+A + V+ S NES   +K ED LKYRPNPD+L SKTDM  ++G GVY+PPK
Sbjct: 118 KLT--RDAGSARDQVDVSENESKASKKPEDNLKYRPNPDLLESKTDMLAQNG-GVYRPPK 174

Query: 180 FAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESREL 239
            AP  M+EDK S++ERNALR++KETLR+A+   FM+EL++D+E RP EV+E  G++S E 
Sbjct: 175 IAPMIMEEDKMSKQERNALRRQKETLRKAKHG-FMKELIDDMEDRPAEVKEYAGLDSWES 233

Query: 240 TRYKEMMEERARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSLPIEEK 299
            RY E  E+RARQEEELFTR PLTK EK+K K LKKSRNGLLGLT+ F DEIK+L +++ 
Sbjct: 234 QRYVEQFEDRARQEEELFTRVPLTKKEKRKQKDLKKSRNGLLGLTDGFNDEIKTLALDDD 293

Query: 300 -DERPTNVSNGSRGMGKLEKRK 320
            +E+ T +SNG   MGKL+KRK
Sbjct: 294 TNEQTTTISNGGSAMGKLKKRK 315

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436946|ref|XP_004136253.1| PREDICTED: neuroguidin-like [Cucumis sativus] gi|449502782|ref|XP_004161741.1| PREDICTED: neuroguidin-like [Cucumis sativus]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/308 (65%), Positives = 247/308 (80%), Gaps = 3/308 (0%)

Query: 17  KEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIV 76
           KEA QL ALL+EMKEGLD + +KVQ+L  KVK N  PT DGISYL+AK+ LLLNYC S+V
Sbjct: 7   KEASQLTALLKEMKEGLDTVTNKVQALTAKVKSNQLPTSDGISYLDAKYFLLLNYCSSLV 66

Query: 77  YYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNP 136
           YYLLRKAKG SIEGHPVV+SLVEIRLFLEKIRPID+KL+YQIQKL  V +     E    
Sbjct: 67  YYLLRKAKGFSIEGHPVVRSLVEIRLFLEKIRPIDKKLEYQIQKLAKVSIVSK--ENAFM 124

Query: 137 SANESGEPQKTEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTSRKERN 196
              +S  PQ  +D LKYRPNPDMLVSKT+ T EDG G+Y+PPKFAP SM+EDK SRKERN
Sbjct: 125 DEKDSATPQDVDDRLKYRPNPDMLVSKTEGTAEDGDGMYRPPKFAPTSMEEDKKSRKERN 184

Query: 197 ALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEEL 256
           ++RK+ +TLRQARQ+ +MREL++D+ G+PEE++E VG+E+RE+ RY   +EER R+EEEL
Sbjct: 185 SMRKDLQTLRQARQNDYMRELMDDMAGKPEEIKESVGLENREVARYVARLEERDRREEEL 244

Query: 257 FTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSLPIE-EKDERPTNVSNGSRGMGK 315
           FTRAPLTKMEKK+ K+LKKSR G+ G+T+SFY+E+KSLP+E   DE+PT+  +GS  M K
Sbjct: 245 FTRAPLTKMEKKREKYLKKSRYGMGGVTDSFYEEVKSLPLEVADDEQPTDFGSGSGRMRK 304

Query: 316 LEKRKVYH 323
            +KRK  H
Sbjct: 305 HKKRKGRH 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510136|ref|XP_003523796.1| PREDICTED: neuroguidin-like [Glycine max]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/327 (62%), Positives = 247/327 (75%), Gaps = 21/327 (6%)

Query: 3   EATGNHSISDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLE 62
           E   NH+  D+  +KEAPQLAALL+EMKEGLD +R K+QSL   VK   YPT DG SYLE
Sbjct: 2   ENIANHN--DDSKQKEAPQLAALLKEMKEGLDTVRHKIQSLTAMVKEGLYPTADGFSYLE 59

Query: 63  AKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLT 122
            K+LLLLNYCQS+VYYLLRKAKGLSIE HPVV+S+VEIRLFLEKIRPID+K QYQIQKL 
Sbjct: 60  VKNLLLLNYCQSLVYYLLRKAKGLSIEDHPVVRSVVEIRLFLEKIRPIDKKQQYQIQKL- 118

Query: 123 SVRVGGNAI-------EPVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTTEDGAGVY 175
            ++   NAI       EPV  +        K+ED  KYRPNPDMLVSK D+T++     Y
Sbjct: 119 -MQASENAIRSDILNKEPVASN--------KSEDASKYRPNPDMLVSKVDLTSQADNEYY 169

Query: 176 KPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVE 235
           +P KFAP SMD +K+S+ ERNALR+EKE L+QA+QS ++R L+ND+E RPEE+R+  G  
Sbjct: 170 QPVKFAPTSMDLEKSSKHERNALRREKEILKQAKQSDYLRTLMNDMEERPEEIRDFEGA- 228

Query: 236 SRELTRYKEMMEERARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSLP 295
           SRE+ RY   M+ERARQEEELFTR PLTK E+K+ K+LKKSRNGL GLTESFYDEIK+LP
Sbjct: 229 SREVDRYIAKMDERARQEEELFTRVPLTKQERKREKYLKKSRNGLQGLTESFYDEIKTLP 288

Query: 296 IEEKD-ERPTNVSNGSRGMGKLEKRKV 321
            E+K  E+    SNGSR   +L+KRK+
Sbjct: 289 FEDKTGEQVVGSSNGSRTNNRLKKRKL 315

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572870|ref|XP_002527367.1| something about silencing protein sas10, putative [Ricinus communis] gi|223533286|gb|EEF35039.1| something about silencing protein sas10, putative [Ricinus communis]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/306 (66%), Positives = 250/306 (81%), Gaps = 6/306 (1%)

Query: 12  DERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNY 71
           D+ +KKEAPQLAALL+EMK+GLD +RSKV +L  KVK NN+ T DGISYLEAKHLLLLNY
Sbjct: 33  DQCIKKEAPQLAALLKEMKDGLDTVRSKVDALTAKVKANNFLTADGISYLEAKHLLLLNY 92

Query: 72  CQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAI 131
           CQS+VYYLLRKAKGLSIE HPVV+SLVEIRLFLEKIRPID+K++YQIQKL  +R  G A+
Sbjct: 93  CQSLVYYLLRKAKGLSIEKHPVVRSLVEIRLFLEKIRPIDKKMEYQIQKL--IRDSGRAM 150

Query: 132 EPVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTS 191
           E  +    ES  P+K+EDLL YRPNPDMLVSK  M  +D +GVY+PPK AP+ M+EDK S
Sbjct: 151 EQPSLKEKESEAPEKSEDLLNYRPNPDMLVSKDRMPGDD-SGVYRPPKIAPSIMEEDKMS 209

Query: 192 RKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERAR 251
           R+ERNALR+EKETLR A+    M+E+++D+EGRPEEV+E +G +SRE TRY++  EERAR
Sbjct: 210 RQERNALRREKETLRHAK-GGLMKEMIDDMEGRPEEVQENLGDDSREFTRYQQQWEERAR 268

Query: 252 QEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSLPIEEK--DERPTNVSNG 309
           +EE+LFTRAP+TKMEKKK K LKKSR+GLL LT+ FYDEIK+LP+E+   D+  +   N 
Sbjct: 269 REEDLFTRAPITKMEKKKEKQLKKSRDGLLALTDDFYDEIKTLPLEDDIGDQVTSFNKNS 328

Query: 310 SRGMGK 315
           SR + K
Sbjct: 329 SRKLKK 334

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518441|ref|XP_003527887.1| PREDICTED: neuroguidin-like [Glycine max]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/322 (62%), Positives = 245/322 (76%), Gaps = 13/322 (4%)

Query: 3   EATGNHSISDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLE 62
           E T  H+  D+  +KEAP+LAALL+EMKEGLD +R K+QSL   VK   YPT DG SYLE
Sbjct: 2   ENTAGHN--DDSKQKEAPKLAALLKEMKEGLDTVRRKIQSLTATVKEGQYPTADGFSYLE 59

Query: 63  AKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLT 122
           AK+LLLLNYCQS+VYYLLRKAKGLSIE HPVV+S+VEIRLFLEKIRPID+K QYQIQKL 
Sbjct: 60  AKNLLLLNYCQSLVYYLLRKAKGLSIEDHPVVRSVVEIRLFLEKIRPIDKKQQYQIQKLI 119

Query: 123 SVRVGGNAIEPVNPSANESGEP---QKTEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPK 179
                  A E    S  ++ EP    K+ED+ KYRPNPDMLVSK D+T +DG   Y+P K
Sbjct: 120 Q------ASENATRSDIQNKEPVASNKSEDVSKYRPNPDMLVSKVDLTLQDGNEYYQPVK 173

Query: 180 FAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESREL 239
           FAP SMD +++S+ ERNALR+EKE L+QA+QS ++R L+ND+E +PEE+R+  G  SRE+
Sbjct: 174 FAPTSMDLERSSKYERNALRREKEILKQAKQSDYIRTLMNDMEEKPEEIRDFEGA-SREV 232

Query: 240 TRYKEMMEERARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSLPIEEK 299
            RY   M+ERARQEEELFTR PLTK E+K+ K+LKKSRNGL GLTESFYDEIK+LP  +K
Sbjct: 233 DRYIAKMDERARQEEELFTRVPLTKQERKREKYLKKSRNGLQGLTESFYDEIKTLPFGDK 292

Query: 300 -DERPTNVSNGSRGMGKLEKRK 320
             E+    SNG R   +L+KRK
Sbjct: 293 TGEQVMGSSNGGRTNNRLKKRK 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
TAIR|locus:2026530	312	AT1G07840 "AT1G07840" [Arabido	0.92	0.958	0.522	9.6e-73
MGI|MGI:1916216	315	Ngdn "neuroguidin, EIF4E bindi	0.618	0.638	0.344	6.6e-26
UNIPROTKB|Q2KII6	315	NGDN "Neuroguidin" [Bos taurus	0.618	0.638	0.358	1.1e-25
UNIPROTKB|Q8NEJ9	315	NGDN "Neuroguidin" [Homo sapie	0.612	0.631	0.347	2.9e-25
DICTYBASE|DDB_G0269972	687	sas10 "U3 snoRNP protein" [Dic	0.612	0.289	0.330	5.7e-25
ZFIN|ZDB-GENE-031030-13	315	ngdn "neuroguidin, EIF4E bindi	0.630	0.650	0.330	3.4e-22
TAIR|locus:2044014	654	EMB2777 "AT2G43650" [Arabidops	0.366	0.181	0.371	3e-17
UNIPROTKB|E2R6S8	476	UTP3 "Uncharacterized protein"	0.556	0.380	0.260	6.7e-17
RGD|1308540	470	Utp3 "UTP3, small subunit (SSU	0.553	0.382	0.291	1.1e-16
MGI|MGI:1919230	469	Utp3 "UTP3, small subunit (SSU	0.569	0.394	0.287	2.9e-16

TAIR|locus:2026530 AT1G07840 "AT1G07840" [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 162/310 (52%), Positives = 203/310 (65%)

Query:    15 VKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQS 74
             VKKEAPQLA++LREMK  LD +RSKV++L   VK N++PT  GISYLEAKHLLLL+YCQ 
Sbjct:    13 VKKEAPQLASVLREMKNVLDVVRSKVEALTALVKANSFPTAGGISYLEAKHLLLLSYCQD 72

Query:    75 IVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPV 134
             +VYY+LRKAKGLSI+GHP+V+SLVEIR+FLEKIRPID+KLQYQIQKLT+   GG   E  
Sbjct:    73 LVYYILRKAKGLSIDGHPLVRSLVEIRMFLEKIRPIDKKLQYQIQKLTTA--GGPVTELA 130

Query:   135 NPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTSRKE 194
             +     S E QK+EDL  Y+P PD+L  K D   +DG  VY+PPKFAP SM EDKTS++E
Sbjct:   131 HSEGKGSCEAQKSEDLSNYKPKPDLLADKEDDQEDDG--VYRPPKFAPMSM-EDKTSKQE 187

Query:   195 RNALRKEKETLRQARQSTFMRELVNDLXXXXXXXXXXXXXXXXXLTRYKXXXXXXXXXXX 254
             R+A RKEK   RQA ++T+M+++++DL                   R+            
Sbjct:   188 RDAARKEKHFFRQATENTYMKDVLDDLEDRPEEIRDYYGVESNEQKRFMAQYERQQKAEE 247

Query:   255 XLFTRAPLTXXXXXXXXXXXXSRNGLLGLTESFYDEIKSLPIEEKD-ERPTNVSNGSRGM 313
              LFTRAP T            S +GL  LTE+FYD+IK L   +KD E+P +     RG 
Sbjct:   248 ELFTRAPRTKEDKKREKRLKSS-SGLHELTENFYDDIKFL---DKDGEKPRSFGRNKRG- 302

Query:   314 GKLEKRKVYH 323
             G  +KRK  H
Sbjct:   303 GPFKKRKTRH 312

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006606 "protein import into nucleus" evidence=RCA

MGI|MGI:1916216 Ngdn "neuroguidin, EIF4E binding protein" [Mus musculus (taxid:10090)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 72/209 (34%), Positives = 112/209 (53%)

Query:    13 ERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYC 72
             E ++ +      LL+ ++E +  + +++Q+L TKV+   Y T  G+S+LE K  LLL Y 
Sbjct:     5 EVLESDVSSSITLLKNLQEQVMAVTAQIQALTTKVRAGTYSTEKGLSFLEVKDQLLLMYL 64

Query:    73 QSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIE 132
               + + +L KA G S++GHP V  LVEIR  LEK+RP+D+KL+YQI KL    V G+  E
Sbjct:    65 MDLSHLILDKASGASLQGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSE 124

Query:   133 --PVNPSANESGEPQK--TEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDED 188
               P+    + S    K  +ED  +         +    + +  A  Y PP+  P   DE 
Sbjct:   125 NDPLRFKPHPSNMVSKLSSEDEEESEAEEGQSEASGKKSAKGSAKKYVPPRLVPVHYDET 184

Query:   189 KTSRKERNALRKEKETLRQARQSTFMREL 217
             +  R+++  L K K   R+A  S+ +REL
Sbjct:   185 EAEREQKR-LEKAK---RRALSSSVIREL 209

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|Q2KII6 NGDN "Neuroguidin" [Bos taurus (taxid:9913)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 75/209 (35%), Positives = 112/209 (53%)

Query:    13 ERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYC 72
             E ++ + P   ALL+ ++E +  + ++VQ+L  KV+   YPT  G+S LE K  LLL Y 
Sbjct:     5 EVLESDLPNAVALLKNLQEQVMAVTAQVQTLTKKVQAKAYPTEKGLSLLEVKDQLLLMYL 64

Query:    73 QSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIE 132
               + + +L KA G S++GHP V  LVEIR  LEK+RP+D+KL+YQI KL    V G+  E
Sbjct:    65 MDLSHLILDKASGGSLQGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSE 124

Query:   133 --PVNPSANESGEPQK--TEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDED 188
               P+    + S    K  +ED  +         +    + +  A  Y PP+  P   DE 
Sbjct:   125 NDPLRFKPHPSNMMSKLSSEDEEEDEAEEGQSGASGKKSGKGTAKKYVPPRLVPVHYDET 184

Query:   189 KTSRKERNALRKEKETLRQARQSTFMREL 217
             +  R E+  L + K   R+A  S+ +REL
Sbjct:   185 EAER-EKKRLERAK---RRALSSSVIREL 209

GO:0030425 "dendrite" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030175 "filopodium" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

UNIPROTKB|Q8NEJ9 NGDN "Neuroguidin" [Homo sapiens (taxid:9606)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 72/207 (34%), Positives = 111/207 (53%)

Query:    15 VKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQS 74
             ++ + P    LL+ ++E +  + ++V+SL  KV+   YPT  G+S+LE K  LLL Y   
Sbjct:     7 LESDLPSAVTLLKNLQEQVMAVTAQVKSLTQKVQAGAYPTEKGLSFLEVKDQLLLMYLMD 66

Query:    75 IVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIE-- 132
             + + +L KA G S++GH  V  LVEIR  LEK+RP+D+KL+YQI KL    V G+  E  
Sbjct:    67 LTHLILDKASGGSLQGHDAVLRLVEIRTVLEKLRPLDQKLKYQIDKLIKTAVTGSLSEND 126

Query:   133 PVNPSANESGEPQK--TEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKT 190
             P+    + S    K  +ED  +     D   +    + +  +  Y PP+  P   DE + 
Sbjct:   127 PLRFKPHPSNMMSKLSSEDEEEDEAEDDQSEASGKKSVKGVSKKYVPPRLVPVHYDETEA 186

Query:   191 SRKERNALRKEKETLRQARQSTFMREL 217
              R E+  L + K   R+A  S+ +REL
Sbjct:   187 ER-EKKRLERAK---RRALSSSVIREL 209

GO:0006417 "regulation of translation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030175 "filopodium" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

DICTYBASE|DDB_G0269972 sas10 "U3 snoRNP protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 293 (108.2 bits), Expect = 5.7e-25, P = 5.7e-25
 Identities = 71/215 (33%), Positives = 121/215 (56%)

Query:    18 EAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVY 77
             E+P L  LL + K  ++++++ +   + KVK N  PT  GIS+LE K+ LLL+YC +I Y
Sbjct:   223 ESPLLLDLLEDFKVKMNEVKTSILPALEKVKSNQLPTSKGISFLETKYQLLLSYCLNITY 282

Query:    78 YLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKL-----TSVRVGGNAIE 132
             +L+ K+ G+SI+ HPV+  L++ R  +EKI+P+D+KL+YQI KL     T   VG +  +
Sbjct:   283 FLMLKSSGVSIKDHPVIDQLIKCRTMIEKIQPLDKKLKYQIDKLLKSANTGTLVGSSKDD 342

Query:   133 PVNPSANES---GEPQKTEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPAS---MD 186
             P+    N S   G+  + ED  +   N        +      AGVY+ PK   A    +D
Sbjct:   343 PLQHRPNLSSMGGDDDEDEDDEQGLDND---YDDENSRIAQRAGVYQAPKLYGAKGGVID 399

Query:   187 -EDKTSRKERNALRKEKETLRQARQSTFMRELVND 220
              ED  ++K+   +R ++++++  + +  + E+  D
Sbjct:   400 QEDAIAKKKSKEIRDKQKSIK-GKMAKEIEEIYGD 433

GO:0030515 "snoRNA binding" evidence=ISS

GO:0006364 "rRNA processing" evidence=ISS

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISS

ZFIN|ZDB-GENE-031030-13 ngdn "neuroguidin, EIF4E binding protein" [Danio rerio (taxid:7955)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 70/212 (33%), Positives = 109/212 (51%)

Query:     9 SISDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLL 68
             ++ ++ + ++ P    LL  + E +  + S V+ LI KV+   Y T  G+S+L+ ++ LL
Sbjct:     5 AVGNDVIDRDLPTAVRLLNSLTEQIVSVTSHVRELIKKVREKAYQTSKGLSFLDLRYHLL 64

Query:    69 LNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGG 128
             L Y Q I + +  K +G S++ +  +  LV IR  LEK+RP+D+KL+YQI KL    V G
Sbjct:    65 LFYLQDITHLISLKTEGESLKDNSAIHRLVTIRTVLEKMRPLDQKLKYQIDKLVRTAVTG 124

Query:   129 NAIEPVNPSANESGEPQKTEDLLKYRPNPDM--LVSKTDMTTEDGAGV-YKPPKFAPASM 185
             +  E  N   +    PQ     L    + D   +  KT    E   G  Y PP+ AP   
Sbjct:   125 SLSE--NDPLHFRPNPQSLVSKLSESEDSDDDGVGGKTKEQKEPSGGRRYVPPRIAPMHY 182

Query:   186 DEDKTSRKERNALRKEKETLRQARQSTFMREL 217
             D D T   +R   R EK+  R A +S+ ++EL
Sbjct:   183 DGDLTEA-DRQKERVEKQK-RAALRSSVIQEL 212

GO:0006417 "regulation of translation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

TAIR|locus:2044014 EMB2777 "AT2G43650" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 3.0e-17, P = 3.0e-17
 Identities = 45/121 (37%), Positives = 76/121 (62%)

Query:    15 VKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGIS-YLEAKHLLLLNYCQ 73
             V   AP++  LL E+ + +++L SK+  ++ K+K     +++G++ YLE K LLLL YCQ
Sbjct:   232 VYSSAPEIVGLLSELNDAVEELESKINPVMNKLKEGEI-SLNGLARYLEVKQLLLLTYCQ 290

Query:    74 SIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEP 133
             SI +YLL K++G  I  HPV+  LVEI+  L+KI+ +D +L    ++  +  +   A++ 
Sbjct:   291 SITFYLLLKSEGQPIRDHPVLARLVEIKSLLDKIKELDEELPPGFEESLARSIANGAVQK 350

Query:   134 V 134
             V
Sbjct:   351 V 351

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0016458 "gene silencing" evidence=IEA

UNIPROTKB|E2R6S8 UTP3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 215 (80.7 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 49/188 (26%), Positives = 98/188 (52%)

Query:    15 VKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQS 74
             ++KE+P+L  L+ ++K  L +++ +++ L+  V+    P   G  YL  K+ L LNYC +
Sbjct:   216 LRKESPELLELIEDLKLKLTEVKDELEPLLQLVEQGIIPPGKGSQYLRTKYNLYLNYCAN 275

Query:    75 IVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPV 134
             I +YL+ KA+ +   GHPV++ LV  R  + K+  +D+KL  +I+ L +++      EP+
Sbjct:   276 ISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTLKGDAGNKEPI 335

Query:   135 NPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTSRK- 193
             + +     +P+   +       P    + TD++ +         K+     D+ K  RK 
Sbjct:   336 SKAKFTKAKPKSVSE------TPAAASAVTDVSDDSDFDEEAARKYYKEIEDQQKLKRKK 389

Query:   194 ERNALRKE 201
             E +++ ++
Sbjct:   390 EEDSIEEQ 397

GO:0007420 "brain development" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

RGD|1308540 Utp3 "UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 213 (80.0 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 55/189 (29%), Positives = 99/189 (52%)

Query:    15 VKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQS 74
             ++KE+P+L  L+ ++K  L +++ +++ LI  V+    P   G  YL+ K+ L LNYC +
Sbjct:   215 LRKESPELLELIEDLKVKLTEVKDELEPLIQLVEKGVIPPGKGSQYLKTKYNLYLNYCAN 274

Query:    75 IVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPV 134
             I +YL+ KA+ +   GHPV++ LV  R  + K+  +D+KL  +I+ L + + G    + +
Sbjct:   275 ISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKEGAGK-KDL 333

Query:   135 NPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTTEDGAGV--YKPPKFAPASMDEDKTSR 192
             NP A  +    KT+   K     D+    T+    D A +  YK  +  P    + + + 
Sbjct:   334 NPKAKLT----KTKP--KSAKQTDVNADLTEEPEFDEAALEFYKEMEDRPELKRKKEENS 387

Query:   193 KERNALRKE 201
              E  AL ++
Sbjct:   388 AEEQALEEQ 396

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0007420 "brain development" evidence=ISO;ISS

GO:0016568 "chromatin modification" evidence=IEA

MGI|MGI:1919230 Utp3 "UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 209 (78.6 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 57/198 (28%), Positives = 104/198 (52%)

Query:    15 VKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQS 74
             +KKE+P+L  L+ +++  L +++ +++ L+  V+    PT  G  YL+ K+ L LNYC +
Sbjct:   215 LKKESPELLELIEDLQAKLTEVKDELEPLLQLVEKGVIPTGRGSEYLKTKYNLYLNYCAN 274

Query:    75 IVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPV 134
             I +YL+ KA+ +   GHPV++ LV  R  + K+  +D+KL  +I+ L + + G    E +
Sbjct:   275 ISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKDGAVKKE-M 333

Query:   135 NPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTSRK- 193
              P A  +    K+   +K        V+ TD    DGA +    K+     D  +  RK 
Sbjct:   334 TPKAKLTKTKPKS---VKQAA----AVALTDEPDFDGAAL----KYYKEMEDRQELKRKK 382

Query:   194 ERNALRKEKETLRQARQS 211
             E N+  ++    + A+++
Sbjct:   383 EENSAEEQALEEQNAKRA 400

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007420 "brain development" evidence=IDA

GO:0016568 "chromatin modification" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2KII6	NGDN_BOVIN	No assigned EC number	0.3174	0.8246	0.8507	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015079001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (319 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	325
pfam04000	81	pfam04000, Sas10_Utp3, Sas10/Utp3/C1D family	1e-15

>gnl|CDD|217836 pfam04000, Sas10_Utp3, Sas10/Utp3/C1D family

 Score = 70.4 bits (173), Expect = 1e-15
 Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 1/82 (1%)

Query: 25  LLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAK 84
           LL E+ + LD+L   ++ L+ KVK      +   S L+AK+ LLL Y  ++++YLL K  
Sbjct: 1   LLEELSKSLDELEESLKPLLKKVKEKES-ELPPASLLKAKNELLLAYLINLLFYLLLKLS 59

Query: 85  GLSIEGHPVVQSLVEIRLFLEK 106
           G+ I+ HPV++ LV +R++LEK
Sbjct: 60  GVDIKDHPVMEELVRLRVYLEK 81

This family contains Utp3 and LCP5 which are components of the U3 ribonucleoprotein complex. It also includes the human C1D protein and Saccharomyces cerevisiae YHR081W (rrp47), an exosome-associated protein required for the 3' processing of stable RNAs, and Sas10 which has been identified as a regulator of chromatin silencing. This family also includes the human protein Neuroguidin an initiation factor 4E (eIF4E) binding protein. Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
KOG3117	340	consensus Protein involved in rRNA processing [RNA	100.0
PF04000	85	Sas10_Utp3: Sas10/Utp3/C1D family; InterPro: IPR00	99.75
KOG3118	517	consensus Disrupter of silencing SAS10 [Chromatin	98.17
KOG4835	144	consensus DNA-binding protein C1D involved in regu	98.11

>KOG3117 consensus Protein involved in rRNA processing [RNA processing and modification]

Probab=100.00  E-value=6.1e-52  Score=388.05  Aligned_cols=279  Identities=30%  Similarity=0.429  Sum_probs=215.8

Q ss_pred             HHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 020478           12 DERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGH   91 (325)
Q Consensus        12 ~~~l~kdsPEl~~LLkel~~~l~~v~~~v~~L~~~vk~~~~~~~~GislL~~K~~lLLsY~~nL~~ylllK~~g~si~~h   91 (325)
                      +..+..++|.|..|+..+..++..+...++.|++.+..+..++.+|+|||++||++||+|++.|+|+|+-|+.|.++..|
T Consensus         4 l~~l~a~~es~~~L~~~l~~q~~~~~k~~~~l~e~l~~ta~~~e~gvSlLsLKnqlll~Yl~~Lt~Lil~klddes~~~h   83 (340)
T KOG3117|consen    4 LKSLTATSESLERLSGILSNQMDVLNKSIQTLLEALPKTASSSEDGVSLLSLKNQLLLSYLQKLTFLILVKLDDESFLQH   83 (340)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccCceeeeechHHHHHHHHHHHHHHHHHhcccccccc
Confidence            45788999999999999999999999999999999988777889999999999999999999999999999999999999


Q ss_pred             -hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHhhhhhcCCCcCCCC---CCCCCCCCCCCccchhccCCCCCccccc----
Q 020478           92 -PVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVN---PSANESGEPQKTEDLLKYRPNPDMLVSK----  163 (325)
Q Consensus        92 -Pvv~rLve~R~~LeKirpLe~kL~yQIdKLl~~~a~~~~~~~~~---~~~~~~~~~~~~~D~L~~rPnp~~l~~~----  163 (325)
                       |+|.|||++|++||||+|||+||+||||||+  +++++++....   ...++........-.+.|+||.+.+...    
T Consensus        84 ~daveRlvqhRvvlEKirPLE~KlkyQiDKLl--raav~~es~~sn~e~r~n~~~~l~n~s~~~~~~~~~s~~~~~sd~p  161 (340)
T KOG3117|consen   84 QDAVERLVQHRVVLEKIRPLENKLKYQIDKLL--RAAVRKESIGSNKEPRNNGNDKLSNMSLKLHYKPNLSEFADDSDGP  161 (340)
T ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHHhhhcccccccccccCCCCcccccccccccCcccccccccccCc
Confidence             9999999999999999999999999999999  66654443211   1111111111111234455555544332    


Q ss_pred             --------CCCCC------------CCCCccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcC
Q 020478          164 --------TDMTT------------EDGAGVYKPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEG  223 (325)
Q Consensus       164 --------~~~~~------------~~~~gvYrPPKia~~~~~~~~~~~~er~~~r~~k~~~rra~~S~~~~el~~e~sd  223 (325)
                              .++.+            ...+|+|+||||.||.|++. +..+.++. ..++ ..|++++|++|+||..+|||
T Consensus       162 eeee~edde~~ksa~~~e~~~ee~~~~e~gkYvpPRI~aV~~d~~-te~er~nk-~~E~-akrsamSssvi~elk~q~SD  238 (340)
T KOG3117|consen  162 EEEENEDDEDDKSAISSEDEEEELRSAEDGKYVPPRIRAVTYDEK-TERERPNK-LVEE-AKRSAMSSSVIQELKSQYSD  238 (340)
T ss_pred             ccccccccccccccccchhhhhhhcccccCcccCCceeeecCchh-hhhcchhH-HHHH-HHHHhhhHHHHHHHHHhccc
Confidence                    21110            12369999999999999942 22222222 2222 34789999999999999999


Q ss_pred             CCchhhhcccchhHHhhHHHHHHHHHHHHhhhcccccC-CChHHHHHhhhhhhhhccccCccccccccccCCCCCccc
Q 020478          224 RPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAP-LTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSLPIEEKD  300 (325)
Q Consensus       224 ~PeE~~~~~g~~~~~~~r~~~~~~Er~~yEE~nftRLp-~sKkekkr~K~~~~~~~~~~g~~~~~f~d~~~l~~~~~~  300 (325)
                      +|+|+....   +...-|+.++++++..|||+|||||| ++|++|+++||.+++  .-.+.+|+||+|+++|+.|...
T Consensus       239 apeeir~~~---~~k~~R~~qk~rrri~yEEsnftRL~~lsK~ekrksKr~~r~--~~~~~~~s~~eDfsals~g~~~  311 (340)
T KOG3117|consen  239 APEEIRGRV---IHKDERELQKMRRRIEYEESNFTRLPKLSKKEKRKSKRVKRH--DYGGEDLSLDEDFSALSLGLTR  311 (340)
T ss_pred             cchhhhhcc---cchhHHHHHHHHHhhhhhhhhhhhhhhccHHHHHHHHHhhhh--hccccccccccchhhhcccccc
Confidence            999876332   33345667778888999999999999 799999999997654  4556788899999999886654

>PF04000 Sas10_Utp3: Sas10/Utp3/C1D family; InterPro: IPR007146 This family contains Utp3 and LCP5 which are components of the U3 ribonucleoprotein complex []

Probab=99.75  E-value=6.8e-18  Score=132.03  Aligned_cols=82  Identities=43%  Similarity=0.733  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh---cCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 020478           25 LLREMKEGLDKLRSKVQSLITKVK---GNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIR  101 (325)
Q Consensus        25 LLkel~~~l~~v~~~v~~L~~~vk---~~~~~~~~GislL~~K~~lLLsY~~nL~~ylllK~~g~si~~hPvv~rLve~R  101 (325)
                      ||++|.+++.++.+.+++++..++   .+..++.+|++|+.+|++++++||+|++||+++|++|.++.+|||+++|+++|
T Consensus         1 ll~~l~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~g~sl~~~K~~~llaY~~~~~~~~~lk~~g~~~~~hpv~~~L~r~r   80 (85)
T PF04000_consen    1 LLKELSESLDEVEESLQPLLEKVKEEKEEELSPSDGISLLQAKNQLLLAYIINLLFYMYLKLSGVDPKDHPVMKELVRIR   80 (85)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHH
Confidence            588999999999999999998884   56678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 020478          102 LFLEK  106 (325)
Q Consensus       102 ~~LeK  106 (325)
                      ++|+|
T Consensus        81 ~~leK   85 (85)
T PF04000_consen   81 QYLEK   85 (85)
T ss_pred             HHHcC
Confidence            99986

It also includes the Homo sapiens (Human) C1D protein and Saccharomyces cerevisiae (Baker's yeast) YHR081W (rrp47), an exosome-associated protein required for the 3' processing of stable RNAs [] and Sas10 which has been identified as a regulator of chromatin silencing []. This entry also includes the human protein Neuroguidin, an initiation factor 4E (eIF4E)-binding protein [].

>KOG3118 consensus Disrupter of silencing SAS10 [Chromatin structure and dynamics]

Probab=98.17  E-value=4.1e-06  Score=84.60  Aligned_cols=112  Identities=18%  Similarity=0.176  Sum_probs=103.1

Q ss_pred             hHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCccHHHHHHH---HHHHHHHHHHHHHHHHhcC
Q 020478           11 SDERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGN--NYPTVDGISYLEAKHL---LLLNYCQSIVYYLLRKAKG   85 (325)
Q Consensus        11 ~~~~l~kdsPEl~~LLkel~~~l~~v~~~v~~L~~~vk~~--~~~~~~GislL~~K~~---lLLsY~~nL~~ylllK~~g   85 (325)
                      ++..++.+.|+.+.++..++..|.++...++|+++++...  .+|+..+-+||..++.   +++.||.+++||+++.+..
T Consensus       222 ~~~~~~~~~~e~~~~~~~~k~~l~el~s~l~t~~~~l~~~~~~L~~gee~~~lr~hp~m~~l~~~ke~w~s~~~l~s~~~  301 (517)
T KOG3118|consen  222 QMLVLYSSEPEIVELLEPLKDLLEELESKLNTYMSYLKELDEELPPGEEESLLRSHPNMAVLKVVKEDWLSFPLLDSVDR  301 (517)
T ss_pred             hhhhhhcccHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhhcCcchhhhhhhhhhhhhhcccccccc
Confidence            4456788999999999999999999999999999999876  6788899999999888   9999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHhhHHHhhHHHHHHHh
Q 020478           86 LSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLT  122 (325)
Q Consensus        86 ~si~~hPvv~rLve~R~~LeKirpLe~kL~yQIdKLl  122 (325)
                      .+-..|||..+||-++.++.++...+.+.+..++++.
T Consensus       302 vts~~~~v~~~i~~~~k~~~kldn~~~e~~e~g~k~k  338 (517)
T KOG3118|consen  302 VTSDEAKVEVRIVLAEKQPMKLDNAREEKKEKGDKLK  338 (517)
T ss_pred             ccccccccchhhHhhhhhhhhhhhHHHHHHHhhhHHh
Confidence            9988999999999999999999999998888888877

>KOG4835 consensus DNA-binding protein C1D involved in regulation of double-strand break repair [Replication, recombination and repair]

Probab=98.11  E-value=2.4e-05  Score=68.13  Aligned_cols=54  Identities=30%  Similarity=0.599  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHhhHHHhhH
Q 020478           62 EAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQ  115 (325)
Q Consensus        62 ~~K~~lLLsY~~nL~~ylllK~~g~si~~hPvv~rLve~R~~LeKirpLe~kL~  115 (325)
                      .+|-.+++.|+++.+||+.+++.|....+|||+..|-+.|++++|++.++.+++
T Consensus        48 qAKld~~~~ya~~sl~~~~l~~kG~da~dh~V~~EL~Rvk~y~~k~Kqi~d~~~  101 (144)
T KOG4835|consen   48 QAKLDLTLAYAINSLFWSFLKLKGVDASDHPVLQELERVKVYMAKIKQINDRVK  101 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHhhcc
Confidence            589999999999999999999999999999999999999999999999888765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	325
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 3e-10
 Identities = 61/386 (15%), Positives = 109/386 (28%), Gaps = 134/386 (34%)

Query: 13  ERVKKEAPQLAALLREMKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLL---LL 69
             +K E  Q + + R   E  D+L +  Q      K N       +S L+    L   LL
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF---AKYN-------VSRLQPYLKLRQALL 145

Query: 70  NYCQSIVYYLLRKAKGLSIEGHP----------VVQSLVEIRLFLEKI-------RPIDR 112
                     LR AK + I+G            V  S         KI            
Sbjct: 146 E---------LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 113 KLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTED-------LLKYRPNPDMLV---- 161
            +   +QKL   ++  N     + S+N      +          LLK +P  + L+    
Sbjct: 197 TVLEMLQKL-LYQIDPNWTSRSDHSSN---IKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 162 -------------SKTDMTTED-------GAGVYKPP--KFAPASMDEDKTSRKERNALR 199
                         K  +TT          A             ++  D+        L 
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 200 KEKETL-RQA-------------------------------RQSTFMRELVNDLEGRPEE 227
              + L R+                                + +T +   +N LE  P E
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--PAE 370

Query: 228 VREV----------VGVESRELTRYKEMMEERARQEEELFTRAPLTKMEKKKM--KHLKK 275
            R++            + +  L+     + +    +  +     + K+ K  +  K  K+
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIK---SDVMVV----VNKLHKYSLVEKQPKE 423

Query: 276 SRNGLLGLTESFYDEIKSLPIEEKDE 301
           S   +  +    Y E+K + +E +  
Sbjct: 424 STISIPSI----YLELK-VKLENEYA 444

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 5e-05
 Identities = 33/177 (18%), Positives = 52/177 (29%), Gaps = 40/177 (22%)

Query: 158 DMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTSRKERNALRKE--KETLRQARQSTFMR 215
           D    +     +D   V++   F   + D        ++ L KE     +      +   
Sbjct: 8   DFETGEHQYQYKDILSVFED-AFV-DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 216 ELVNDLEGRPEEVREVVGVESRELTRYKEMME---ERARQ---EEELFTRA--------- 260
            L   L  + EE+ +   VE      YK +M       RQ      ++            
Sbjct: 66  RLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 261 PLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSLPIEEKDERP-TNVS-NGSRGMGK 315
              K    +++   K R  LL L                  RP  NV  +G  G GK
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLEL------------------RPAKNVLIDGVLGSGK 163

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.4 bits (91), Expect = 6e-04
 Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 24/98 (24%)

Query: 196 NALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEE 255
           + L +E E++R+ R            E + + ++E+           ++   E+A+++ E
Sbjct: 78  DRLTQEPESIRKWR------------EEQRKRLQELDAASKVM----EQEWREKAKKDLE 121

Query: 256 LFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKS 293
            + +    ++EK K      +R       ++FY +  +
Sbjct: 122 EWNQRQSEQVEKNK----INNRI----ADKAFYQQPDA 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00