Citrus Sinensis ID: 020480

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHSRYLLYKFPFFVLVFPLFPSLQHYLN
Secondary Structure (PSIPRED)
ccccHHHccccccccccHHHHHHHHHccHHHHHHHHHccccccccEEEEEEccccccccccEEEEEEEEEcccccccccEEEEEEEcccccccccccccccccccccccccccccEEEEEEEEccccEEEEEEccccccEEEEEEccccEEEEEcccccccccccccccccEEEEcccccEEEEEcccccccEEEEEEccccEEEEEccccccccccccEEEEEccccEEEEEEEccccccEEEEEEcccEEEEEEcccccccccEEEEEcccccEEEEEcccccccccccEEEEEEEccEEEEEcccccEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEEEcccccccccccccEEEEEEEEccccccccEEEEEEEEcccccccccHHHcHHHccccccccccccEEEEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEccccccccccccccccEEEEEcccccEcEEEEcccccEEEEEEccccEEEEEEcccccccccccccEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccccccHHHHccccccHcEcccccccEEcccccccccHHHHHHHHccccEEEEEccccHHHHHHcc
Coil and Loop (DISEMBL)
MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHalewpsltvewlpdreeppgkdysvqkmilgthtsenepnYLMLAQVqlplddsendarhydddrsdfggfgcangKVQIIQQINHdgevnrarympqnpfliatktvsAEVYVfdyskhpskppldgacspdlrlrghstegyglswskfkeghllsgsddaqiclwdinaapknkslEAMQIFKVHEGVVEDVAWHLRHEYlfgsvgddqyLLIWdlrtpsvskpvqSVVAHQSEVGVSILNASfrlshedtctcthrhsryllykfpffvlvfplfpslqhyln
Flexible Loop (DISEMBL)
mgkdeeemrGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSkhpskppldgACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHSRYLLYKFPFFVLVFPLFPSLQHYLN
Low Complexity Region (SEG)
MGKDeeemrgeieeRLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHSRYLLYKfpffvlvfplfpSLQHYLN
Disordered region (IsUnstruct)
**************RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLP***************I***********YLMLAQV*******************DFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYS*********************STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHSRYLLYKFPFFVLVFPLFPSLQHY**
Disordered Region (DISOPRED)
*****************NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP***********DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHSRYLLYKFPFFVLVFPLFPSLQ*YL*
Disordered Region (DISEMBL)
**********EIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHSRYLLYKFPFFVLVFPLFPSLQHYLN
Disordered Region (DISPRO)
********RGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ***AHQSEVGVSILNASFRLSHEDTCTCTHRHSRYLLYKFPFFVLVFPLFPSLQHYLN
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHSRYLLYKFPFFVLVFPLFPSLQHYLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
O22466	424	WD-40 repeat-containing p	N/A	no	0.815	0.625	0.921	1e-156
O22467	424	Histone-binding protein M	yes	no	0.815	0.625	0.904	1e-146
Q10G81	428	Histone-binding protein M	yes	no	0.772	0.586	0.839	1e-135
Q9W7I5	425	Histone-binding protein R	yes	no	0.864	0.661	0.625	1e-101
Q60972	425	Histone-binding protein R	yes	no	0.864	0.661	0.625	1e-101
Q09028	425	Histone-binding protein R	yes	no	0.864	0.661	0.625	1e-101
Q3MHL3	425	Histone-binding protein R	yes	no	0.864	0.661	0.625	1e-101
Q6P315	425	Histone-binding protein R	yes	no	0.855	0.654	0.632	1e-101
Q8AVH1	425	Histone-binding protein R	N/A	no	0.855	0.654	0.628	1e-101
Q5RF92	425	Histone-binding protein R	yes	no	0.864	0.661	0.621	1e-101

>sp|O22466|MSI1_SOLLC WD-40 repeat-containing protein MSI1 OS=Solanum lycopersicum GN=MSI1 PE=2 SV=1

 Score =  551 bits (1421), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 260/282 (92%), Positives = 273/282 (96%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKDE+EMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEP GKD
Sbjct: 1   MGKDEDEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQKMILGTHTSENEPNYLMLAQVQLPL+D+ENDARHYDDDRS+FGGFGCANGKVQIIQ
Sbjct: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDARHYDDDRSEFGGFGCANGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQNPF+IATKTVSAEVYVFDYSKHPSKPPLDGAC+PDLRLRGHSTE
Sbjct: 121 QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWS+FK+GHLLSGSDD+ ICLWDINA PKNK+LEAMQIFKVHEGVVEDVAWHLRHE
Sbjct: 181 GYGLSWSQFKQGHLLSGSDDSHICLWDINATPKNKALEAMQIFKVHEGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           YLFGSVGDDQYL +WDLRTPSV+KP+QSVVAHQSEV     N
Sbjct: 241 YLFGSVGDDQYLHVWDLRTPSVTKPIQSVVAHQSEVNCLAFN 282

Solanum lycopersicum (taxid: 4081)

>sp|O22467|MSI1_ARATH Histone-binding protein MSI1 OS=Arabidopsis thaliana GN=MSI1 PE=1 SV=1

 Score =  518 bits (1334), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 255/282 (90%), Positives = 268/282 (95%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEP GKD
Sbjct: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQKMILGTHTSE+EPNYLMLAQVQLPLDD+E++AR YDDDRS+FGGFGCA GKVQIIQ
Sbjct: 61  YSVQKMILGTHTSESEPNYLMLAQVQLPLDDTESEARQYDDDRSEFGGFGCATGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQNPF+IATKTV+AEVYVFDYSKHPSKPPLDGAC+PDL+LRGHS+E
Sbjct: 121 QINHDGEVNRARYMPQNPFIIATKTVNAEVYVFDYSKHPSKPPLDGACNPDLKLRGHSSE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWSKFK+GHLLSGSDDAQICLWDINA PKNKSL+A QIFK HEGVVEDVAWHLRHE
Sbjct: 181 GYGLSWSKFKQGHLLSGSDDAQICLWDINATPKNKSLDAQQIFKAHEGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           YLFGSVGDDQYLLIWDLR+PS SKPVQSVVAH  EV     N
Sbjct: 241 YLFGSVGDDQYLLIWDLRSPSASKPVQSVVAHSMEVNCLAFN 282

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair, and the fertilization independent seed (FIS) complex, a polycomb group protein complex which is required to maintain the transcriptionally repressive state of homeotic genes throughout development. Required for several aspects of plant development including normal leaf expansion, correct development of flowers, normal endosperm development, repression of parthenogenetic seed development and repression of floral homeotic genes in leaf tissue. Also required for the recruitment of chromosomal DNA into heterochromatic chromocenters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10G81|MSI1_ORYSJ Histone-binding protein MSI1 homolog OS=Oryza sativa subsp. japonica GN=MSI1 PE=2 SV=1

 Score =  480 bits (1235), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 225/268 (83%), Positives = 245/268 (91%)

Query: 15  RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
           RLINEEYKIWKKNTPFLYDLVITHALEWPSLTV+WLPDR EP GKD+SVQKM+LGTHTS+
Sbjct: 19  RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDRAEPAGKDHSVQKMVLGTHTSD 78

Query: 75  NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
           NEPNYLMLAQVQLPLDD+E DARHYDDD ++ GGFG A+GKVQI+QQINHDGEVNRARYM
Sbjct: 79  NEPNYLMLAQVQLPLDDAEADARHYDDDHAEIGGFGAASGKVQIVQQINHDGEVNRARYM 138

Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
           PQN F+IATKTVSAEVYVFDYSKHPSKPPLDGAC+PDLRL+GH++EGYGLSWS FKEGHL
Sbjct: 139 PQNSFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLKGHNSEGYGLSWSIFKEGHL 198

Query: 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI 254
           LSGSDDAQICLWDI A  KNK+L+A+QIFK H+GVVEDVAWHLRHEYLFGSVGDD  LLI
Sbjct: 199 LSGSDDAQICLWDIKANSKNKTLDALQIFKYHDGVVEDVAWHLRHEYLFGSVGDDHNLLI 258

Query: 255 WDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           WDLR+P  +KPVQSV AHQ EV     N
Sbjct: 259 WDLRSPVSTKPVQSVAAHQGEVNCLAFN 286

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism such as the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9W7I5|RBBP4_CHICK Histone-binding protein RBBP4 OS=Gallus gallus GN=RBBP4 PE=1 SV=3

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/283 (62%), Positives = 214/283 (75%), Gaps = 2/283 (0%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           M   E      +EER+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD
Sbjct: 1   MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           +S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  
Sbjct: 61  FSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEI 119

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  E
Sbjct: 120 KINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKE 179

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRH 239
           GYGLSW+    GHLLS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL H
Sbjct: 180 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLH 239

Query: 240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           E LFGSV DDQ L+IWD R+ + SKP  SV AH +EV     N
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Gallus gallus (taxid: 9031)

>sp|Q60972|RBBP4_MOUSE Histone-binding protein RBBP4 OS=Mus musculus GN=Rbbp4 PE=1 SV=5

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/283 (62%), Positives = 214/283 (75%), Gaps = 2/283 (0%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           M   E      +EER+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD
Sbjct: 1   MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           +S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  
Sbjct: 61  FSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEI 119

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  E
Sbjct: 120 KINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKE 179

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRH 239
           GYGLSW+    GHLLS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL H
Sbjct: 180 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLH 239

Query: 240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           E LFGSV DDQ L+IWD R+ + SKP  SV AH +EV     N
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Mus musculus (taxid: 10090)

>sp|Q09028|RBBP4_HUMAN Histone-binding protein RBBP4 OS=Homo sapiens GN=RBBP4 PE=1 SV=3

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/283 (62%), Positives = 214/283 (75%), Gaps = 2/283 (0%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           M   E      +EER+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD
Sbjct: 1   MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           +S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  
Sbjct: 61  FSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEI 119

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  E
Sbjct: 120 KINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKE 179

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRH 239
           GYGLSW+    GHLLS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL H
Sbjct: 180 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLH 239

Query: 240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           E LFGSV DDQ L+IWD R+ + SKP  SV AH +EV     N
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Homo sapiens (taxid: 9606)

>sp|Q3MHL3|RBBP4_BOVIN Histone-binding protein RBBP4 OS=Bos taurus GN=RBBP4 PE=1 SV=3

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/283 (62%), Positives = 214/283 (75%), Gaps = 2/283 (0%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           M   E      +EER+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD
Sbjct: 1   MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           +S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  
Sbjct: 61  FSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEI 119

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  E
Sbjct: 120 KINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKE 179

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRH 239
           GYGLSW+    GHLLS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL H
Sbjct: 180 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLH 239

Query: 240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           E LFGSV DDQ L+IWD R+ + SKP  SV AH +EV     N
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Bos taurus (taxid: 9913)

>sp|Q6P315|RBBP7_XENTR Histone-binding protein RBBP7 OS=Xenopus tropicalis GN=rbbp7 PE=2 SV=1

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/280 (63%), Positives = 215/280 (76%), Gaps = 2/280 (0%)

Query: 4   DEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSV 63
           ++E     +EER+INEEYKIWKKNTPFLYDLV+THALEWPSLTV+WLPD   P GKDY++
Sbjct: 3   NKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVTRPEGKDYAL 62

Query: 64  QKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQIN 123
             ++LGTHTS+ E N+L++A+VQ+P DD++ DA HYD ++ +FGGFG  +GK++   +IN
Sbjct: 63  HWLVLGTHTSD-EQNHLVVARVQIPNDDAQFDASHYDSEKGEFGGFGSVSGKIETEIKIN 121

Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG 183
           H+GEVNRARYMPQNP +IATKT SA+V VFDY+KHPSKP   G CSPDLRLRGH  EGYG
Sbjct: 122 HEGEVNRARYMPQNPCIIATKTPSADVLVFDYTKHPSKPDPSGDCSPDLRLRGHQKEGYG 181

Query: 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYL 242
           LSW+    GHLLS SDD  +CLWDI+A PK  K ++A  IF  H  VVEDVAWHL HE L
Sbjct: 182 LSWNSNLSGHLLSASDDHTVCLWDISAGPKEGKVVDAKAIFTGHSAVVEDVAWHLLHESL 241

Query: 243 FGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           FGSV DDQ L+IWD R+ + SKP  SV AH +EV     N
Sbjct: 242 FGSVADDQKLMIWDTRSNTTSKPSHSVDAHTAEVNCLSFN 281

Core histone-binding subunit that may target chromatin remodeling factors, histone acetyltransferases and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus tropicalis (taxid: 8364)

>sp|Q8AVH1|RBBP7_XENLA Histone-binding protein RBBP7 OS=Xenopus laevis GN=rbbp7 PE=2 SV=1

 Score =  368 bits (945), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/280 (62%), Positives = 215/280 (76%), Gaps = 2/280 (0%)

Query: 4   DEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSV 63
           ++E     +EER+INEEYKIWKKNTPFLYDLV+THALEWPSLTV+WLPD   P GKDY++
Sbjct: 3   NKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVTRPEGKDYAL 62

Query: 64  QKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQIN 123
             ++LGTHTS+ E N+L++A+VQ+P DD++ DA HYD ++ +FGGFG  +GK++   +IN
Sbjct: 63  HWLVLGTHTSD-EQNHLVVARVQVPNDDAQFDASHYDSEKGEFGGFGSVSGKIETEIKIN 121

Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG 183
           H+GEVNRARYMPQNP +IATKT SA+V VFDY+KHPSKP   G CSPDLRLRGH  EGYG
Sbjct: 122 HEGEVNRARYMPQNPCIIATKTPSADVLVFDYTKHPSKPDPSGECSPDLRLRGHQKEGYG 181

Query: 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYL 242
           LSW+    GHLLS SDD  +CLWDI+A PK  K ++A  +F  H  VVEDVAWHL HE L
Sbjct: 182 LSWNSNLSGHLLSASDDHTVCLWDISAGPKEGKVVDAKAVFTGHSAVVEDVAWHLLHESL 241

Query: 243 FGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           FGSV DDQ L+IWD R+ + SKP  SV AH +EV     N
Sbjct: 242 FGSVADDQKLMIWDTRSNTTSKPSHSVDAHTAEVNCLSFN 281

Core histone-binding subunit that may target chromatin remodeling factors, histone acetyltransferases and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus laevis (taxid: 8355)

>sp|Q5RF92|RBBP4_PONAB Histone-binding protein RBBP4 OS=Pongo abelii GN=RBBP4 PE=2 SV=3

 Score =  367 bits (941), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/283 (62%), Positives = 214/283 (75%), Gaps = 2/283 (0%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           M   E      +EER+INEE+KIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD
Sbjct: 1   MADKEAAFDDAVEERVINEEHKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           +S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  
Sbjct: 61  FSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEI 119

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  E
Sbjct: 120 KINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKE 179

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRH 239
           GYGLSW+    GHLLS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL H
Sbjct: 180 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLH 239

Query: 240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           E LFGSV DDQ L+IWD R+ + SKP  SV AH +EV     N
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
224129418	424	nucleosome/chromatin assembly factor gro	0.815	0.625	0.939	1e-156
166203413	424	multicopy suppressor of IRA1 [Nicotiana	0.815	0.625	0.918	1e-155
350536661	424	WD-40 repeat-containing protein MSI1 [So	0.815	0.625	0.921	1e-154
319904087	422	multicopy suppressor of IRA1 [Malus x do	0.815	0.627	0.918	1e-153
167593879	423	multicopy suppressor of Ira1 [Hieracium	0.830	0.638	0.907	1e-152
167593885	423	multicopy suppressor of Ira1 [Hieracium	0.830	0.638	0.904	1e-152
167593889	423	multicopy suppressor of Ira1 [Hieracium	0.830	0.638	0.904	1e-151
69207914	425	WD-40 repeat protein [Pisum sativum]	0.815	0.623	0.893	1e-150
255571135	424	retinoblastoma-binding protein, putative	0.815	0.625	0.943	1e-149
449432325	423	PREDICTED: WD-40 repeat-containing prote	0.809	0.621	0.925	1e-149

>gi|224129418|ref|XP_002320581.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222861354|gb|EEE98896.1| nucleosome/chromatin assembly factor group [Populus trichocarpa]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 265/282 (93%), Positives = 273/282 (96%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKDE+EMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD
Sbjct: 1   MGKDEDEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQKMILGTHTSENEPNYLMLAQVQLPLDD+ENDARHYDDDRSDFGGFG ANGKVQIIQ
Sbjct: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDAENDARHYDDDRSDFGGFGAANGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQNPF+IATKTVSAEVYVFDYSKHPSKPPLDGAC+PDLRLRGHSTE
Sbjct: 121 QINHDGEVNRARYMPQNPFMIATKTVSAEVYVFDYSKHPSKPPLDGACTPDLRLRGHSTE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWSKFKEG+LLSGSDDAQICLWDIN  PKNKSL+AMQIFKVHEGVVEDVAWHLRHE
Sbjct: 181 GYGLSWSKFKEGYLLSGSDDAQICLWDINTTPKNKSLDAMQIFKVHEGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           +LFGSVGDDQYLLIWDLRTPSV+KPV SVVAHQSEV     N
Sbjct: 241 HLFGSVGDDQYLLIWDLRTPSVTKPVHSVVAHQSEVNCLAFN 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|166203413|gb|ABY84675.1| multicopy suppressor of IRA1 [Nicotiana tabacum]

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 259/282 (91%), Positives = 273/282 (96%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKDE+EMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD
Sbjct: 1   MGKDEDEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQKMILGTHTSENEPNYLMLAQVQLPL+D+ENDARHYDDDRS+FGGFGCANGKVQIIQ
Sbjct: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDARHYDDDRSEFGGFGCANGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQN F+IATKT+SAEVYVFDYSKHPSKPPLDGAC+PDLRLRGHSTE
Sbjct: 121 QINHDGEVNRARYMPQNSFIIATKTISAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWS+FK+GHLLSGSDDAQ CLWDINA PKNK+L+AMQIFK+HEGVVEDVAWHLRHE
Sbjct: 181 GYGLSWSQFKQGHLLSGSDDAQTCLWDINATPKNKALDAMQIFKIHEGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           YLFGSVGDDQYL IWDLRTPSV+KP+QSVVAHQSEV     N
Sbjct: 241 YLFGSVGDDQYLHIWDLRTPSVTKPIQSVVAHQSEVNCLAFN 282

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536661|ref|NP_001234002.1| WD-40 repeat-containing protein MSI1 [Solanum lycopersicum] gi|3122386|sp|O22466.1|MSI1_SOLLC RecName: Full=WD-40 repeat-containing protein MSI1 gi|2394227|gb|AAB70241.1| WD-40 repeat protein [Solanum lycopersicum]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 260/282 (92%), Positives = 273/282 (96%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKDE+EMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEP GKD
Sbjct: 1   MGKDEDEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQKMILGTHTSENEPNYLMLAQVQLPL+D+ENDARHYDDDRS+FGGFGCANGKVQIIQ
Sbjct: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDARHYDDDRSEFGGFGCANGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQNPF+IATKTVSAEVYVFDYSKHPSKPPLDGAC+PDLRLRGHSTE
Sbjct: 121 QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWS+FK+GHLLSGSDD+ ICLWDINA PKNK+LEAMQIFKVHEGVVEDVAWHLRHE
Sbjct: 181 GYGLSWSQFKQGHLLSGSDDSHICLWDINATPKNKALEAMQIFKVHEGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           YLFGSVGDDQYL +WDLRTPSV+KP+QSVVAHQSEV     N
Sbjct: 241 YLFGSVGDDQYLHVWDLRTPSVTKPIQSVVAHQSEVNCLAFN 282

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|319904087|gb|ADV77222.1| multicopy suppressor of IRA1 [Malus x domestica]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 259/282 (91%), Positives = 271/282 (96%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKD+EEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD
Sbjct: 1   MGKDDEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQKMILGTHTSENEPNYLMLAQVQLPL+D+ENDARHYDDDR++ GGFGCANGKVQIIQ
Sbjct: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDARHYDDDRAEVGGFGCANGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQNPF+IATKTV+AEV+VFDYSKHPSKPP DGACSPDLRLRGHSTE
Sbjct: 121 QINHDGEVNRARYMPQNPFIIATKTVNAEVFVFDYSKHPSKPPXDGACSPDLRLRGHSTE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWSKFK+GHLLSGSDDAQICLWDINA  KNK+LE MQIFKVHEGVVEDVAWHLRHE
Sbjct: 181 GYGLSWSKFKQGHLLSGSDDAQICLWDINATXKNKTLEXMQIFKVHEGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
            LFGSVGDDQYLL+WDLRTPSV+KPVQSVVAHQSEV     N
Sbjct: 241 NLFGSVGDDQYLLVWDLRTPSVTKPVQSVVAHQSEVNCLAFN 282

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|167593879|gb|ABZ85626.1| multicopy suppressor of Ira1 [Hieracium pilosella]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 256/282 (90%), Positives = 271/282 (96%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKDE++MRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDR+EP GKD
Sbjct: 1   MGKDEDDMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRDEPAGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQK+ILGTHTSENEPNYLMLAQVQLPL+D+E DARHYDDDRSDFGGFGCANGKVQIIQ
Sbjct: 61  YSVQKLILGTHTSENEPNYLMLAQVQLPLEDAEYDARHYDDDRSDFGGFGCANGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQNPF+IATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH+TE
Sbjct: 121 QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHNTE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWSKFK+GHLLSGSDDAQICLWDIN  PKNKSL+AMQIFKVH+GVVEDVAWHLRHE
Sbjct: 181 GYGLSWSKFKQGHLLSGSDDAQICLWDINGTPKNKSLDAMQIFKVHDGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           YLFGS GDDQYL IWDLR+PSV+KP+QSV+AHQSEV     N
Sbjct: 241 YLFGSCGDDQYLHIWDLRSPSVTKPIQSVMAHQSEVNCLAFN 282

Source: Hieracium pilosella

Species: Hieracium pilosella

Genus: Hieracium

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|167593885|gb|ABZ85629.1| multicopy suppressor of Ira1 [Hieracium piloselloides]

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 255/282 (90%), Positives = 271/282 (96%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKDE++MRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDR+EP GKD
Sbjct: 1   MGKDEDDMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRDEPAGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQK+ILGTHTSENEPNYLMLAQVQLPL+D+E DARHYDDDRSDFGGFGCANGKVQIIQ
Sbjct: 61  YSVQKLILGTHTSENEPNYLMLAQVQLPLEDAEYDARHYDDDRSDFGGFGCANGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQNPF+IATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH+TE
Sbjct: 121 QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHNTE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWSKFK+GHLLSGSDDAQICLWDIN  PKNKSL+AMQIFKVH+GVVEDVAWHLRHE
Sbjct: 181 GYGLSWSKFKQGHLLSGSDDAQICLWDINGTPKNKSLDAMQIFKVHDGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           YLFGS GDD+YL IWDLR+PSV+KP+QSV+AHQSEV     N
Sbjct: 241 YLFGSCGDDRYLHIWDLRSPSVTKPIQSVMAHQSEVNCLAFN 282

Source: Hieracium piloselloides

Species: Hieracium piloselloides

Genus: Hieracium

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|167593889|gb|ABZ85631.1| multicopy suppressor of Ira1 [Hieracium caespitosum]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 255/282 (90%), Positives = 270/282 (95%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKDE++MRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDR+EP GKD
Sbjct: 1   MGKDEDDMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRDEPAGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQK+ILGTHTSENEPNYLMLAQVQLPL+D+E DAR YDDDRSDFGGFGCANGKVQIIQ
Sbjct: 61  YSVQKLILGTHTSENEPNYLMLAQVQLPLEDAEYDARXYDDDRSDFGGFGCANGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQNPF+IATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH+TE
Sbjct: 121 QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHNTE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWSKFK+GHLLSGSDDAQICLWDIN  PKNKSL+AMQIFKVH+GVVEDVAWHLRHE
Sbjct: 181 GYGLSWSKFKQGHLLSGSDDAQICLWDINGTPKNKSLDAMQIFKVHDGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           YLFGS GDDQYL IWDLR+PSV+KP+QSV+AHQSEV     N
Sbjct: 241 YLFGSCGDDQYLHIWDLRSPSVTKPIQSVMAHQSEVNCLAFN 282

Source: Hieracium caespitosum

Species: Hieracium caespitosum

Genus: Hieracium

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|69207914|gb|AAZ03745.1| WD-40 repeat protein [Pisum sativum]

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 252/282 (89%), Positives = 269/282 (95%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGK++EEMRGEIEERLINEEYKIWKKN+PFLYDLVITHALEWPSLTVEWLPDR+EPPGKD
Sbjct: 3   MGKEDEEMRGEIEERLINEEYKIWKKNSPFLYDLVITHALEWPSLTVEWLPDRQEPPGKD 62

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YS+QK+ILGTHTSENEPNYLMLAQVQLPLDDSENDARHY+DDR + GGFGCANGKVQIIQ
Sbjct: 63  YSLQKLILGTHTSENEPNYLMLAQVQLPLDDSENDARHYEDDRPEVGGFGCANGKVQIIQ 122

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQN F+IATKT+SAEVYVFDYSKHPSKPPLDG+C+PDLRLRGH+TE
Sbjct: 123 QINHDGEVNRARYMPQNNFIIATKTISAEVYVFDYSKHPSKPPLDGSCNPDLRLRGHNTE 182

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWS FK+GHLLSGSDDAQICLWDIN  PKNKSL+AMQIFKVHEGVVEDVAWHLRHE
Sbjct: 183 GYGLSWSTFKQGHLLSGSDDAQICLWDINGTPKNKSLDAMQIFKVHEGVVEDVAWHLRHE 242

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           YLFGSVGDDQYLLIWDLRTPSV+KPVQS +AH SEV     N
Sbjct: 243 YLFGSVGDDQYLLIWDLRTPSVTKPVQSCIAHSSEVNCLAFN 284

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571135|ref|XP_002526518.1| retinoblastoma-binding protein, putative [Ricinus communis] gi|223534193|gb|EEF35909.1| retinoblastoma-binding protein, putative [Ricinus communis]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 266/282 (94%), Positives = 272/282 (96%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPP KD
Sbjct: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPDKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQKMILGTHTSENEPNYLMLAQVQLPLDD+ENDARHYDDDRSD GGFG ANGKVQIIQ
Sbjct: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDAENDARHYDDDRSDMGGFGAANGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQNPF+IATKTVSAEVY+FDYSKHPSKPPLDGACSPDLRLRGHSTE
Sbjct: 121 QINHDGEVNRARYMPQNPFIIATKTVSAEVYLFDYSKHPSKPPLDGACSPDLRLRGHSTE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWSKFK+GHLLSGSDDAQICLWDIN+ PKNKSL+A QIFKVHEGVVEDVAWHLRHE
Sbjct: 181 GYGLSWSKFKQGHLLSGSDDAQICLWDINSTPKNKSLDAFQIFKVHEGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV     N
Sbjct: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432325|ref|XP_004133950.1| PREDICTED: WD-40 repeat-containing protein MSI1-like [Cucumis sativus] gi|449515418|ref|XP_004164746.1| PREDICTED: WD-40 repeat-containing protein MSI1-like [Cucumis sativus]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 261/282 (92%), Positives = 273/282 (96%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKD+EEMRGE+EERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD
Sbjct: 1   MGKDDEEMRGEMEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQKMILGTHTSENEPNYLMLAQVQLPL+DSENDARHYDDDR+D GGFGCANGKVQIIQ
Sbjct: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLEDSENDARHYDDDRADAGGFGCANGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQNPF+IATKTVSAEV+VFDYSKHPSKPPLDG C+PDLRLRGH+TE
Sbjct: 121 QINHDGEVNRARYMPQNPFIIATKTVSAEVFVFDYSKHPSKPPLDGTCNPDLRLRGHNTE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWSKFK+GHLLSGSDDAQICLWDINA PKNK+LEAMQIFKVHEGVVEDVAWHLRHE
Sbjct: 181 GYGLSWSKFKQGHLLSGSDDAQICLWDINATPKNKTLEAMQIFKVHEGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           YLFGSVGDDQYLL+WDLRTPS +KPVQSVVAHQSEV     N
Sbjct: 241 YLFGSVGDDQYLLVWDLRTPSANKPVQSVVAHQSEVNCLAFN 282

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
TAIR|locus:2161253	424	MSI1 "MULTICOPY SUPRESSOR OF I	0.867	0.665	0.868	2e-136
UNIPROTKB|F2Z4M0	425	RBBP4 "Histone-binding protein	0.821	0.628	0.643	8.7e-95
UNIPROTKB|Q9W7I5	425	RBBP4 "Histone-binding protein	0.821	0.628	0.643	8.7e-95
UNIPROTKB|Q3MHL3	425	RBBP4 "Histone-binding protein	0.821	0.628	0.643	8.7e-95
UNIPROTKB|E2QXR8	425	RBBP4 "Uncharacterized protein	0.821	0.628	0.643	8.7e-95
UNIPROTKB|Q09028	425	RBBP4 "Histone-binding protein	0.821	0.628	0.643	8.7e-95
UNIPROTKB|Q6P315	425	rbbp7 "Histone-binding protein	0.821	0.628	0.646	8.7e-95
MGI|MGI:1194912	425	Rbbp4 "retinoblastoma binding	0.821	0.628	0.643	8.7e-95
RGD|1593768	425	Rbbp4 "retinoblastoma binding	0.821	0.628	0.643	8.7e-95
UNIPROTKB|Q8AVH1	425	rbbp7 "Histone-binding protein	0.821	0.628	0.643	1.1e-94

TAIR|locus:2161253 MSI1 "MULTICOPY SUPRESSOR OF IRA1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1336 (475.4 bits), Expect = 2.0e-136, P = 2.0e-136
 Identities = 245/282 (86%), Positives = 258/282 (91%)

Query:     1 MGKDXXXXXXXXXXRLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
             MGKD          RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEP GKD
Sbjct:     1 MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKD 60

Query:    61 YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
             YSVQKMILGTHTSE+EPNYLMLAQVQLPLDD+E++AR YDDDRS+FGGFGCA GKVQIIQ
Sbjct:    61 YSVQKMILGTHTSESEPNYLMLAQVQLPLDDTESEARQYDDDRSEFGGFGCATGKVQIIQ 120

Query:   121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
             QINHDGEVNRARYMPQNPF+IATKTV+AEVYVFDYSKHPSKPPLDGAC+PDL+LRGHS+E
Sbjct:   121 QINHDGEVNRARYMPQNPFIIATKTVNAEVYVFDYSKHPSKPPLDGACNPDLKLRGHSSE 180

Query:   181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
             GYGLSWSKFK+GHLLSGSDDAQICLWDINA PKNKSL+A QIFK HEGVVEDVAWHLRHE
Sbjct:   181 GYGLSWSKFKQGHLLSGSDDAQICLWDINATPKNKSLDAQQIFKAHEGVVEDVAWHLRHE 240

Query:   241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
             YLFGSVGDDQYLLIWDLR+PS SKPVQSVVAH  EV     N
Sbjct:   241 YLFGSVGDDQYLLIWDLRSPSASKPVQSVVAHSMEVNCLAFN 282

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0016568 "chromatin modification" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IPI

GO:0009507 "chloroplast" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0031507 "heterochromatin assembly" evidence=RCA;IMP

GO:0009909 "regulation of flower development" evidence=RCA;IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0010026 "trichome differentiation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

GO:0010214 "seed coat development" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0009555 "pollen development" evidence=IGI;IMP

GO:0045787 "positive regulation of cell cycle" evidence=IGI;RCA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IPI

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

UNIPROTKB|F2Z4M0 RBBP4 "Histone-binding protein RBBP4" [Gallus gallus (taxid:9031)]

 Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
 Identities = 173/269 (64%), Positives = 209/269 (77%)

Query:    15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
             R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query:    75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
              E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYM
Sbjct:    75 -EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133

Query:   135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
             PQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHL
Sbjct:   134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193

Query:   195 LSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
             LS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL HE LFGSV DDQ L+
Sbjct:   194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253

Query:   254 IWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
             IWD R+ + SKP  SV AH +EV     N
Sbjct:   254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0031497 "chromatin assembly" evidence=IEA

GO:0033186 "CAF-1 complex" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

UNIPROTKB|Q9W7I5 RBBP4 "Histone-binding protein RBBP4" [Gallus gallus (taxid:9031)]

 Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
 Identities = 173/269 (64%), Positives = 209/269 (77%)

Query:    15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
             R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query:    75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
              E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYM
Sbjct:    75 -EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133

Query:   135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
             PQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHL
Sbjct:   134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193

Query:   195 LSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
             LS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL HE LFGSV DDQ L+
Sbjct:   194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253

Query:   254 IWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
             IWD R+ + SKP  SV AH +EV     N
Sbjct:   254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282

GO:0006260 "DNA replication" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0031497 "chromatin assembly" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006338 "chromatin remodeling" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

UNIPROTKB|Q3MHL3 RBBP4 "Histone-binding protein RBBP4" [Bos taurus (taxid:9913)]

 Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
 Identities = 173/269 (64%), Positives = 209/269 (77%)

Query:    15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
             R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query:    75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
              E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYM
Sbjct:    75 -EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133

Query:   135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
             PQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHL
Sbjct:   134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193

Query:   195 LSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
             LS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL HE LFGSV DDQ L+
Sbjct:   194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253

Query:   254 IWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
             IWD R+ + SKP  SV AH +EV     N
Sbjct:   254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282

GO:0031497 "chromatin assembly" evidence=ISS

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|E2QXR8 RBBP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
 Identities = 173/269 (64%), Positives = 209/269 (77%)

Query:    15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
             R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query:    75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
              E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYM
Sbjct:    75 -EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133

Query:   135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
             PQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHL
Sbjct:   134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193

Query:   195 LSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
             LS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL HE LFGSV DDQ L+
Sbjct:   194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253

Query:   254 IWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
             IWD R+ + SKP  SV AH +EV     N
Sbjct:   254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0033186 "CAF-1 complex" evidence=IEA

GO:0031497 "chromatin assembly" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

UNIPROTKB|Q09028 RBBP4 "Histone-binding protein RBBP4" [Homo sapiens (taxid:9606)]

 Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
 Identities = 173/269 (64%), Positives = 209/269 (77%)

Query:    15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
             R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query:    75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
              E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYM
Sbjct:    75 -EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133

Query:   135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
             PQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHL
Sbjct:   134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193

Query:   195 LSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
             LS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL HE LFGSV DDQ L+
Sbjct:   194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253

Query:   254 IWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
             IWD R+ + SKP  SV AH +EV     N
Sbjct:   254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282

GO:0006260 "DNA replication" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016581 "NuRD complex" evidence=NAS;IDA

GO:0016589 "NURF complex" evidence=IDA

GO:0035098 "ESC/E(Z) complex" evidence=IDA

GO:0033186 "CAF-1 complex" evidence=IDA

GO:0031497 "chromatin assembly" evidence=IDA

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0008094 "DNA-dependent ATPase activity" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006334 "nucleosome assembly" evidence=TAS

GO:0034080 "CENP-A containing nucleosome assembly at centromere" evidence=TAS

GO:0016580 "Sin3 complex" evidence=NAS

GO:0042393 "histone binding" evidence=NAS

GO:0042826 "histone deacetylase binding" evidence=IPI

UNIPROTKB|Q6P315 rbbp7 "Histone-binding protein RBBP7" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
 Identities = 174/269 (64%), Positives = 209/269 (77%)

Query:    15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
             R+INEEYKIWKKNTPFLYDLV+THALEWPSLTV+WLPD   P GKDY++  ++LGTHTS+
Sbjct:    14 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVTRPEGKDYALHWLVLGTHTSD 73

Query:    75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
              E N+L++A+VQ+P DD++ DA HYD ++ +FGGFG  +GK++   +INH+GEVNRARYM
Sbjct:    74 -EQNHLVVARVQIPNDDAQFDASHYDSEKGEFGGFGSVSGKIETEIKINHEGEVNRARYM 132

Query:   135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
             PQNP +IATKT SA+V VFDY+KHPSKP   G CSPDLRLRGH  EGYGLSW+    GHL
Sbjct:   133 PQNPCIIATKTPSADVLVFDYTKHPSKPDPSGDCSPDLRLRGHQKEGYGLSWNSNLSGHL 192

Query:   195 LSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
             LS SDD  +CLWDI+A PK  K ++A  IF  H  VVEDVAWHL HE LFGSV DDQ L+
Sbjct:   193 LSASDDHTVCLWDISAGPKEGKVVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLM 252

Query:   254 IWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
             IWD R+ + SKP  SV AH +EV     N
Sbjct:   253 IWDTRSNTTSKPSHSVDAHTAEVNCLSFN 281

GO:0035098 "ESC/E(Z) complex" evidence=ISS

MGI|MGI:1194912 Rbbp4 "retinoblastoma binding protein 4" [Mus musculus (taxid:10090)]

 Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
 Identities = 173/269 (64%), Positives = 209/269 (77%)

Query:    15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
             R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query:    75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
              E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYM
Sbjct:    75 -EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133

Query:   135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
             PQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHL
Sbjct:   134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193

Query:   195 LSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
             LS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL HE LFGSV DDQ L+
Sbjct:   194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253

Query:   254 IWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
             IWD R+ + SKP  SV AH +EV     N
Sbjct:   254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006260 "DNA replication" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=ISO;TAS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016581 "NuRD complex" evidence=ISO;IDA

GO:0016589 "NURF complex" evidence=ISO

GO:0031497 "chromatin assembly" evidence=ISO

GO:0033186 "CAF-1 complex" evidence=ISO

GO:0035098 "ESC/E(Z) complex" evidence=ISO;IDA

GO:0042826 "histone deacetylase binding" evidence=ISO

RGD|1593768 Rbbp4 "retinoblastoma binding protein 4" [Rattus norvegicus (taxid:10116)]

 Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
 Identities = 173/269 (64%), Positives = 209/269 (77%)

Query:    15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
             R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query:    75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
              E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYM
Sbjct:    75 -EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133

Query:   135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
             PQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHL
Sbjct:   134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193

Query:   195 LSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
             LS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL HE LFGSV DDQ L+
Sbjct:   194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253

Query:   254 IWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
             IWD R+ + SKP  SV AH +EV     N
Sbjct:   254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282

GO:0005634 "nucleus" evidence=ISO

GO:0006338 "chromatin remodeling" evidence=IEA;ISO

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA;ISO

GO:0016581 "NuRD complex" evidence=IEA;ISO

GO:0016589 "NURF complex" evidence=IEA;ISO

GO:0031497 "chromatin assembly" evidence=IEA;ISO

GO:0033186 "CAF-1 complex" evidence=IEA;ISO

GO:0035098 "ESC/E(Z) complex" evidence=IEA;ISO

GO:0042826 "histone deacetylase binding" evidence=IEA;ISO

UNIPROTKB|Q8AVH1 rbbp7 "Histone-binding protein RBBP7" [Xenopus laevis (taxid:8355)]

 Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
 Identities = 173/269 (64%), Positives = 209/269 (77%)

Query:    15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
             R+INEEYKIWKKNTPFLYDLV+THALEWPSLTV+WLPD   P GKDY++  ++LGTHTS+
Sbjct:    14 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVTRPEGKDYALHWLVLGTHTSD 73

Query:    75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
              E N+L++A+VQ+P DD++ DA HYD ++ +FGGFG  +GK++   +INH+GEVNRARYM
Sbjct:    74 -EQNHLVVARVQVPNDDAQFDASHYDSEKGEFGGFGSVSGKIETEIKINHEGEVNRARYM 132

Query:   135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
             PQNP +IATKT SA+V VFDY+KHPSKP   G CSPDLRLRGH  EGYGLSW+    GHL
Sbjct:   133 PQNPCIIATKTPSADVLVFDYTKHPSKPDPSGECSPDLRLRGHQKEGYGLSWNSNLSGHL 192

Query:   195 LSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
             LS SDD  +CLWDI+A PK  K ++A  +F  H  VVEDVAWHL HE LFGSV DDQ L+
Sbjct:   193 LSASDDHTVCLWDISAGPKEGKVVDAKAVFTGHSAVVEDVAWHLLHESLFGSVADDQKLM 252

Query:   254 IWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
             IWD R+ + SKP  SV AH +EV     N
Sbjct:   253 IWDTRSNTTSKPSHSVDAHTAEVNCLSFN 281

GO:0035098 "ESC/E(Z) complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CS36	HAT2_CRYNJ	No assigned EC number	0.5018	0.8123	0.6068	yes	no
Q09028	RBBP4_HUMAN	No assigned EC number	0.6254	0.8646	0.6611	yes	no
Q9W7I5	RBBP4_CHICK	No assigned EC number	0.6254	0.8646	0.6611	yes	no
O22467	MSI1_ARATH	No assigned EC number	0.9042	0.8153	0.625	yes	no
O22466	MSI1_SOLLC	No assigned EC number	0.9219	0.8153	0.625	N/A	no
Q3MHL3	RBBP4_BOVIN	No assigned EC number	0.6254	0.8646	0.6611	yes	no
Q6P315	RBBP7_XENTR	No assigned EC number	0.6321	0.8553	0.6541	yes	no
Q60972	RBBP4_MOUSE	No assigned EC number	0.6254	0.8646	0.6611	yes	no
Q54SD4	RBBD_DICDI	No assigned EC number	0.5970	0.8307	0.6382	yes	no
Q24572	CAF1_DROME	No assigned EC number	0.6258	0.8492	0.6418	yes	no
Q10G81	MSI1_ORYSJ	No assigned EC number	0.8395	0.7723	0.5864	yes	no
Q5RF92	RBBP4_PONAB	No assigned EC number	0.6219	0.8646	0.6611	yes	no
Q6P3H7	RBBP4_DANRE	No assigned EC number	0.6113	0.8646	0.6627	yes	no
P90916	LIN53_CAEEL	No assigned EC number	0.5583	0.8215	0.6402	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NFC901 nucleosome/chromatin assembly factor group (424 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	325
pfam12265	73	pfam12265, CAF1C_H4-bd, Histone-binding protein RB	8e-35
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-05
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	0.001
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002

>gnl|CDD|221499 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 or subunit C of CAF1 complex

 Score =  121 bits (305), Expect = 8e-35
 Identities = 40/73 (54%), Positives = 54/73 (73%)

Query: 18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEP 77
          NEEY++WKKN PFLYD++ THALEWPSL+ +WLPD  +   +    Q+++LGT TS  E 
Sbjct: 1  NEEYELWKKNDPFLYDMLHTHALEWPSLSFDWLPDLLKGDNRYPHTQRLLLGTQTSGQEQ 60

Query: 78 NYLMLAQVQLPLD 90
          NYL++A+V LP  
Sbjct: 61 NYLLVAKVSLPSK 73

The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six. Length = 73

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 61.2 bits (149), Expect = 9e-11
 Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 22/153 (14%)

Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG 183
           H   VN   + P   F +A+ +    + ++D                   L GH+ E   
Sbjct: 134 HTDWVNSVAFSPDGTF-VASSSQDGTIKLWDLR----------TGKCVATLTGHTGEVNS 182

Query: 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLF 243
           +++S      LLS S D  I LWD++        + +   + HE  V  VA+     YL 
Sbjct: 183 VAFSP-DGEKLLSSSSDGTIKLWDLSTG------KCLGTLRGHENGVNSVAFS-PDGYLL 234

Query: 244 GSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276
            S  +D  + +WDLRT    + VQ++  H + V
Sbjct: 235 ASGSEDGTIRVWDLRTG---ECVQTLSGHTNSV 264

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 40/181 (22%), Positives = 69/181 (38%), Gaps = 41/181 (22%)

Query: 110 GCANGKVQI---------IQQINHDGEVNRARYMPQNPFLIAT---KTVSAEVYVFDYSK 157
           G  +G +++              H G V          +L +    KT+     ++D   
Sbjct: 27  GSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIR----LWDLET 82

Query: 158 HPSKPPLDGACSPDLR-LRGHSTEGYGLSWSKFKEGHLL-SGSDDAQICLWDINAAPKNK 215
                   G C   +R L GH++    +++S   +G +L S S D  I +WD+       
Sbjct: 83  --------GEC---VRTLTGHTSYVSSVAFSP--DGRILSSSSRDKTIKVWDVETG---- 125

Query: 216 SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275
             + +   + H   V  VA+     ++  S   D  + +WDLRT    K V ++  H  E
Sbjct: 126 --KCLTTLRGHTDWVNSVAFSPDGTFVASS-SQDGTIKLWDLRT---GKCVATLTGHTGE 179

Query: 276 V 276
           V
Sbjct: 180 V 180

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 35/155 (22%), Positives = 54/155 (34%), Gaps = 26/155 (16%)

Query: 124 HDGEVNRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG 181
           H G V    + P    L    T S    + V+D                   L+GH+   
Sbjct: 8   HTGGVTCVAFSPDGKLLA---TGSGDGTIKVWDLET----------GELLRTLKGHTGPV 54

Query: 182 YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEY 241
             ++ S      L SGS D  I LWD+      + +   +    H   V  VA+      
Sbjct: 55  RDVAASADGTY-LASGSSDKTIRLWDLE---TGECV---RTLTGHTSYVSSVAFSPDGRI 107

Query: 242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276
           L  S   D+ + +WD+ T    K + ++  H   V
Sbjct: 108 LSSS-SRDKTIKVWDVETG---KCLTTLRGHTDWV 138

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 46/200 (23%), Positives = 75/200 (37%), Gaps = 41/200 (20%)

Query: 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYS-KHPSKPPLDG-------ACSPD--- 171
            H   V+   + P    LIA+ +    + ++D S     +  L G       + SPD   
Sbjct: 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSL 255

Query: 172 ----------------------LRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDIN 209
                                   L GHS+    +++S      L SGS D  + LWD+ 
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDL- 313

Query: 210 AAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV 269
              +   L +    K HEG V  +++      L     DD  + +WDLRT    KP++++
Sbjct: 314 ---ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT---GKPLKTL 367

Query: 270 VAHQSEVGVSILNASFRLSH 289
             H + + VS       +S 
Sbjct: 368 EGHSNVLSVSFSPDGRVVSS 387

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.4 bits (124), Expect = 2e-07
 Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 15/130 (11%)

Query: 137 NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196
           N  L+A+ ++   V ++D S                 L GHS     L++S   +     
Sbjct: 123 NSILLASSSLDGTVKLWDLS---------TPGKLIRTLEGHSESVTSLAFSPDGKLLASG 173

Query: 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD 256
            S D  I LWD+      ++ + +     H   V  +A+      L  S   D  + +WD
Sbjct: 174 SSLDGTIKLWDL------RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227

Query: 257 LRTPSVSKPV 266
           L T  + +  
Sbjct: 228 LSTGKLLRST 237

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 19/133 (14%)

Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG 183
           H GEVN   + P    L+++ +    + ++D S         G C     LRGH      
Sbjct: 176 HTGEVNSVAFSPDGEKLLSS-SSDGTIKLWDLST--------GKCL--GTLRGHENGVNS 224

Query: 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLF 243
           +++S      L SGS+D  I +WD+      ++ E +Q    H   V  +AW    + L 
Sbjct: 225 VAFS-PDGYLLASGSEDGTIRVWDL------RTGECVQTLSGHTNSVTSLAWSPDGKRLA 277

Query: 244 GSVGDDQYLLIWD 256
            S   D  + IWD
Sbjct: 278 -SGSADGTIRIWD 289

Length = 289

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI--NAAPKNKSLEAMQIFKVHE 227
           P ++L+GH++    L ++      L SGS+D  I +W+I  N     +  +   I K H+
Sbjct: 66  PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125

Query: 228 GVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257
             +  + W+  + Y+  S G D ++ IWD+
Sbjct: 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155

Length = 568

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD 207
           L+GH+     +++S      L SGSDD  + +WD
Sbjct: 7   LKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0302	440	consensus Ribosome Assembly protein [General funct	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.97
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.97
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.97
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.96
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.96
KOG0286	343	consensus G-protein beta subunit [General function	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0286	343	consensus G-protein beta subunit [General function	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.94
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.94
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.94
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.94
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.94
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.93
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.93
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.93
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.93
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.92
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.92
KOG0266	456	consensus WD40 repeat-containing protein [General	99.92
PTZ00421	493	coronin; Provisional	99.91
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.91
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.91
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.91
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.91
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.91
KOG0645	312	consensus WD40 repeat protein [General function pr	99.9
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.9
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.9
KOG0266	456	consensus WD40 repeat-containing protein [General	99.9
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.9
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.89
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.89
PTZ00420	568	coronin; Provisional	99.89
PTZ00421	493	coronin; Provisional	99.89
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.89
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.89
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.89
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.88
PTZ00420	568	coronin; Provisional	99.88
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.87
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.87
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.87
PLN00181	793	protein SPA1-RELATED; Provisional	99.87
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.87
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.87
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.87
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.87
PLN00181	793	protein SPA1-RELATED; Provisional	99.87
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.86
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.86
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.86
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.86
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.86
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.86
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.86
KOG0641	350	consensus WD40 repeat protein [General function pr	99.86
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.85
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.85
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.85
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.85
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.84
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.84
KOG0267	825	consensus Microtubule severing protein katanin p80	99.84
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.84
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.84
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.84
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.84
KOG0289	506	consensus mRNA splicing factor [General function p	99.84
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.84
KOG0643	327	consensus Translation initiation factor 3, subunit	99.84
KOG0643	327	consensus Translation initiation factor 3, subunit	99.83
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.83
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.82
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.82
KOG0296	399	consensus Angio-associated migratory cell protein	99.82
KOG0289	506	consensus mRNA splicing factor [General function p	99.82
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.82
KOG0646	476	consensus WD40 repeat protein [General function pr	99.82
KOG4328	498	consensus WD40 protein [Function unknown]	99.82
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.82
KOG0296	399	consensus Angio-associated migratory cell protein	99.82
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.82
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.81
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.81
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.81
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.81
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.8
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.8
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.8
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.79
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.79
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.79
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.79
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.79
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.78
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.77
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.76
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.76
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.76
KOG0641	350	consensus WD40 repeat protein [General function pr	99.76
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.76
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.75
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.75
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.75
KOG1273	405	consensus WD40 repeat protein [General function pr	99.75
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.75
KOG0267	825	consensus Microtubule severing protein katanin p80	99.74
KOG0639	705	consensus Transducin-like enhancer of split protei	99.73
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.73
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.72
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.72
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.72
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.72
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.72
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.71
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.7
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.7
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.69
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.68
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.68
KOG0639	705	consensus Transducin-like enhancer of split protei	99.68
KOG4328	498	consensus WD40 protein [Function unknown]	99.68
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.68
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.67
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.67
KOG1274	933	consensus WD40 repeat protein [General function pr	99.67
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.66
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.66
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.66
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.65
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.65
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.64
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.64
KOG0646	476	consensus WD40 repeat protein [General function pr	99.64
KOG1188	376	consensus WD40 repeat protein [General function pr	99.64
KOG2096	420	consensus WD40 repeat protein [General function pr	99.64
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.64
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.64
PF12265	74	CAF1C_H4-bd: Histone-binding protein RBBP4 or subu	99.64
KOG2048	691	consensus WD40 repeat protein [General function pr	99.63
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.62
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.62
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.62
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.61
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.61
KOG1310	758	consensus WD40 repeat protein [General function pr	99.6
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.6
KOG2055	514	consensus WD40 repeat protein [General function pr	99.6
KOG2096	420	consensus WD40 repeat protein [General function pr	99.6
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.59
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.59
KOG2048	691	consensus WD40 repeat protein [General function pr	99.58
KOG1188	376	consensus WD40 repeat protein [General function pr	99.57
KOG0649	325	consensus WD40 repeat protein [General function pr	99.55
KOG1539	910	consensus WD repeat protein [General function pred	99.55
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.55
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.55
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.54
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.54
KOG0649	325	consensus WD40 repeat protein [General function pr	99.54
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.53
KOG1274	933	consensus WD40 repeat protein [General function pr	99.53
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.51
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.51
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.51
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.5
KOG1539	910	consensus WD repeat protein [General function pred	99.5
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.5
KOG2055	514	consensus WD40 repeat protein [General function pr	99.48
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.48
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.47
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.46
KOG4227	609	consensus WD40 repeat protein [General function pr	99.46
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.44
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.42
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.41
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.41
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.41
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.4
KOG1310	758	consensus WD40 repeat protein [General function pr	99.39
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.39
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.38
COG2319	466	FOG: WD40 repeat [General function prediction only	99.36
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.36
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.35
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.35
KOG2321	703	consensus WD40 repeat protein [General function pr	99.34
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.33
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.33
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.32
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.32
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.32
KOG1273	405	consensus WD40 repeat protein [General function pr	99.32
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.31
PRK11028	330	6-phosphogluconolactonase; Provisional	99.31
KOG2139	445	consensus WD40 repeat protein [General function pr	99.26
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.26
KOG2139	445	consensus WD40 repeat protein [General function pr	99.25
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.23
PRK01742	429	tolB translocation protein TolB; Provisional	99.22
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.21
PRK11028	330	6-phosphogluconolactonase; Provisional	99.2
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.18
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.17
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.16
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.15
COG2319	466	FOG: WD40 repeat [General function prediction only	99.13
KOG4227	609	consensus WD40 repeat protein [General function pr	99.13
KOG1334	559	consensus WD40 repeat protein [General function pr	99.12
PRK01742	429	tolB translocation protein TolB; Provisional	99.11
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.1
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.07
PRK03629	429	tolB translocation protein TolB; Provisional	99.05
KOG2321	703	consensus WD40 repeat protein [General function pr	99.03
PRK04922	433	tolB translocation protein TolB; Provisional	99.03
PRK02889	427	tolB translocation protein TolB; Provisional	99.02
PRK05137	435	tolB translocation protein TolB; Provisional	99.0
PRK05137	435	tolB translocation protein TolB; Provisional	99.0
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.99
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.99
KOG1963	792	consensus WD40 repeat protein [General function pr	98.98
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.97
KOG4547	541	consensus WD40 repeat-containing protein [General	98.96
PRK04922	433	tolB translocation protein TolB; Provisional	98.95
PRK03629	429	tolB translocation protein TolB; Provisional	98.94
KOG4547	541	consensus WD40 repeat-containing protein [General	98.92
PRK02889	427	tolB translocation protein TolB; Provisional	98.92
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.91
KOG1334	559	consensus WD40 repeat protein [General function pr	98.89
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.88
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.86
PRK01029	428	tolB translocation protein TolB; Provisional	98.84
KOG2695	425	consensus WD40 repeat protein [General function pr	98.82
KOG1963	792	consensus WD40 repeat protein [General function pr	98.81
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.81
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.81
PRK00178	430	tolB translocation protein TolB; Provisional	98.79
PRK04792	448	tolB translocation protein TolB; Provisional	98.74
KOG2695	425	consensus WD40 repeat protein [General function pr	98.72
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.7
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.69
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.68
PRK04792	448	tolB translocation protein TolB; Provisional	98.67
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.66
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.66
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.65
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.64
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.63
PRK00178	430	tolB translocation protein TolB; Provisional	98.62
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.62
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.62
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.62
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.6
PRK01029	428	tolB translocation protein TolB; Provisional	98.6
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.6
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.59
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.57
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.57
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.48
PRK04043	419	tolB translocation protein TolB; Provisional	98.47
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.46
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.46
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.43
KOG2315	566	consensus Predicted translation initiation factor	98.42
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.42
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.41
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.4
COG4946	668	Uncharacterized protein related to the periplasmic	98.4
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.39
KOG2315	566	consensus Predicted translation initiation factor	98.38
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.36
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.34
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.31
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.19
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.18
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.12
PRK04043	419	tolB translocation protein TolB; Provisional	98.0
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.96
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.91
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.9
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.89
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.89
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.88
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.83
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.83
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.81
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.76
KOG3621	726	consensus WD40 repeat-containing protein [General	97.75
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.71
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.69
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.69
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.66
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.53
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.51
COG4946	668	Uncharacterized protein related to the periplasmic	97.5
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.46
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.45
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.45
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.43
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.4
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.33
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.32
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.3
KOG2314	698	consensus Translation initiation factor 3, subunit	97.28
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.27
KOG2314	698	consensus Translation initiation factor 3, subunit	97.22
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.17
KOG3621	726	consensus WD40 repeat-containing protein [General	97.13
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.12
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.09
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.06
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.01
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.98
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.84
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.83
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	96.83
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.65
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.58
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.52
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.45
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.42
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.36
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.23
KOG2444	238	consensus WD40 repeat protein [General function pr	96.16
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.15
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.98
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.96
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.89
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.85
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.83
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.7
PRK02888	635	nitrous-oxide reductase; Validated	95.62
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.58
KOG2395	644	consensus Protein involved in vacuole import and d	95.56
COG3391	381	Uncharacterized conserved protein [Function unknow	95.49
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.37
KOG2395	644	consensus Protein involved in vacuole import and d	94.99
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.92
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.83
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	94.8
PRK13616	591	lipoprotein LpqB; Provisional	94.63
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	94.6
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.33
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.24
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	94.16
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.01
KOG2444	238	consensus WD40 repeat protein [General function pr	93.98
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	93.97
PRK02888	635	nitrous-oxide reductase; Validated	93.96
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	93.89
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.85
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	93.76
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	93.66
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.63
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.53
COG3391	381	Uncharacterized conserved protein [Function unknow	93.14
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	93.12
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.82
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.59
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	92.58
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.55
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	92.45
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.11
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	92.09
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	91.56
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	91.51
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.4
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	91.26
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	91.21
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	91.2
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.14
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	90.85
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	90.67
KOG2247	615	consensus WD40 repeat-containing protein [General	89.62
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	88.95
PHA02713	557	hypothetical protein; Provisional	88.94
PRK13616	591	lipoprotein LpqB; Provisional	88.83
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	88.35
KOG2377	657	consensus Uncharacterized conserved protein [Funct	88.05
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	86.98
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	86.91
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	86.52
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	86.23
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	86.17
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	85.6
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	85.18
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	85.16
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	84.88
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	84.77
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	84.73
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	84.7
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	84.27
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	84.16
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	83.73
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	83.66
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.3
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	83.29
PHA02713	557	hypothetical protein; Provisional	83.01
KOG2247	615	consensus WD40 repeat-containing protein [General	82.49
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	81.81
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	80.79
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	80.68
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	80.05

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=3.1e-50  Score=337.31  Aligned_cols=302  Identities=62%  Similarity=1.032  Sum_probs=274.1

Q ss_pred             chhhhhhhhhhhhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEE
Q 020480            3 KDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLML   82 (325)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i   82 (325)
                      +.|+++++..+.+.++|++++||+|+|+||+.+..|.+.||+++++|.|+........+..+++++|++++++++|+|+|
T Consensus         2 ~~~~~~~~~~~~~~i~Eey~~WKkNtp~LYDlv~th~LeWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~~~~n~L~i   81 (422)
T KOG0264|consen    2 NAEEAMDEALEQRQINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSGSEQNYLVI   81 (422)
T ss_pred             chHhhccchhccccccchhhHHhhcCcHHHHHhhhccccccceEEEEcCCcccccCCCceeEEEEEEeecCCCCccEEEE
Confidence            35677788888889999999999999999999999999999999999999777778889999999999999999999999


Q ss_pred             EEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCC
Q 020480           83 AQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP  162 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~  162 (325)
                      +++.+|..+.......++++.+++.++....+++++...+.|.+.|+++++.|++++++|+++..+.|.|||....+...
T Consensus        82 A~v~lp~~~~~~~~~~~~~e~~e~~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~  161 (422)
T KOG0264|consen   82 ASVQLPTDDAQFEDKHYDEERGEFGGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKP  161 (422)
T ss_pred             EeecCCCcccccccccccccccccCCccccccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcc
Confidence            99999998888888889999999998888888999999999999999999999999999999999999999998876665


Q ss_pred             CCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCC-CCcccceEeeecCCccEEEEEeecCCCc
Q 020480          163 PLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEY  241 (325)
Q Consensus       163 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~v~~~p~~~~  241 (325)
                      +..+...|-.++.+|....++|+|++.....|++|+.|+.|++||+..... .+.+.+...+.+|+..|..++|+|.+..
T Consensus       162 ~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~  241 (422)
T KOG0264|consen  162 KASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED  241 (422)
T ss_pred             cccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh
Confidence            544567788899999999999999999999999999999999999987765 3455678889999999999999999999


Q ss_pred             EEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc---cCCCCceEEeeecceeee
Q 020480          242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL---SHEDTCTCTHRHSRYLLY  305 (325)
Q Consensus       242 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~~~~~~  305 (325)
                      +|++++.|+.+.|||+|+. ..++.....+|.++|+|++|+|.+..   ++|.|+++.+||+|.+..
T Consensus       242 lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~  307 (422)
T KOG0264|consen  242 LFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK  307 (422)
T ss_pred             hheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc
Confidence            9999999999999999974 34467888999999999999998773   899999999999988754

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=100.00  E-value=1.3e-33  Score=232.26  Aligned_cols=267  Identities=25%  Similarity=0.409  Sum_probs=203.0

Q ss_pred             ChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcc-eEEEEEEecCCCCCCCeEEEEEEE-CCCCCCCcccCCCCcccCC
Q 020480           28 TPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYS-VQKMILGTHTSENEPNYLMLAQVQ-LPLDDSENDARHYDDDRSD  105 (325)
Q Consensus        28 ~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~~~~~~  105 (325)
                      .|..|..++..+.+|||++++..|+.....+..|+ ...++.|+|+.....|.|+++.+. +.......+.+..++++.+
T Consensus        56 DpsaYe~lH~~~~gwPcLsfDVi~D~LG~eR~e~P~~~Ylv~gtQa~~~~~N~l~vlkl~nl~~t~~~~~gd~~~~~edd  135 (440)
T KOG0302|consen   56 DPSAYEMLHNFNSGWPCLSFDVIPDRLGDERTEFPHTAYLVAGTQALDAPDNELMVLKLSNLHKTRNPNDGDGEDEEEDD  135 (440)
T ss_pred             CHHHHHHhhcccCCCcccceeeecCCCCcccccCchHhhhhhhhhccccccCceEEEEeeeeecccCCccCCCCCccccc
Confidence            48899999999999999999999999998888888 556889999999999999999884 3322221111111111111


Q ss_pred             CCCCCCCCCceEEEEEeccCCCeeEEEecCCC-CcEEEEEecCCeEEEEeCCCCCCCCC------CCCCCCCcEEE----
Q 020480          106 FGGFGCANGKVQIIQQINHDGEVNRARYMPQN-PFLIATKTVSAEVYVFDYSKHPSKPP------LDGACSPDLRL----  174 (325)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~la~g~~dg~v~vwd~~~~~~~~~------~~~~~~~~~~~----  174 (325)
                      .   .-..|++.. +.++|.+.+++++-++.+ ..+.|+-+..|.|+||++........      .....+|++++    
T Consensus       136 e---dD~~P~~~~-~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk  211 (440)
T KOG0302|consen  136 E---DDRKPQIEM-KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK  211 (440)
T ss_pred             h---hhccccccc-cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC
Confidence            0   002456554 578899999999999874 45777888999999999876432111      01112222222    


Q ss_pred             ------------------------------------------ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCC
Q 020480          175 ------------------------------------------RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAP  212 (325)
Q Consensus       175 ------------------------------------------~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~  212 (325)
                                                                .+|+..|-+|+|+|...+.|+|||.||+|+|||+|.+.
T Consensus       212 ~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~  291 (440)
T KOG0302|consen  212 GEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP  291 (440)
T ss_pred             ccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC
Confidence                                                      34666777777777777899999999999999999986


Q ss_pred             CCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--c-cC
Q 020480          213 KNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--L-SH  289 (325)
Q Consensus       213 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~-~~  289 (325)
                      +.    +....++|.+.|+.++|+..- .+||+|+.||+++|||+|..+..+|+..++.|+.+|++|.|+|...  + .+
T Consensus       292 ~~----~~~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaas  366 (440)
T KOG0302|consen  292 KK----AAVSTKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAAS  366 (440)
T ss_pred             cc----ceeEeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEec
Confidence            63    333448999999999999876 4999999999999999998887779999999999999999999654  3 78


Q ss_pred             CCCceEEeeeccee
Q 020480          290 EDTCTCTHRHSRYL  303 (325)
Q Consensus       290 ~~d~~~~~~~~~~~  303 (325)
                      |.|.++.+||+..-
T Consensus       367 g~D~QitiWDlsvE  380 (440)
T KOG0302|consen  367 GEDNQITIWDLSVE  380 (440)
T ss_pred             cCCCcEEEEEeecc
Confidence            89999999998553

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3.8e-31  Score=220.65  Aligned_cols=221  Identities=21%  Similarity=0.267  Sum_probs=190.1

Q ss_pred             hhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480           14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE   93 (325)
Q Consensus        14 ~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~   93 (325)
                      +-..|.++|+|+.+......-+..|...  +..|+|.|++.          .+..+++..     .-.+|++.       
T Consensus       236 t~s~Dgtvklw~~~~e~~l~~l~gH~~R--Vs~VafHPsG~----------~L~TasfD~-----tWRlWD~~-------  291 (459)
T KOG0272|consen  236 TASADGTVKLWKLSQETPLQDLEGHLAR--VSRVAFHPSGK----------FLGTASFDS-----TWRLWDLE-------  291 (459)
T ss_pred             eeccCCceeeeccCCCcchhhhhcchhh--heeeeecCCCc----------eeeeccccc-----chhhcccc-------
Confidence            3346789999999998888899999866  88999999985          455555433     34455443       


Q ss_pred             cccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE
Q 020480           94 NDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR  173 (325)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~  173 (325)
                                          .+-++....+|...|.+++|.++| .++++|+.|..-+|||+++        +  ..+..
T Consensus       292 --------------------tk~ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRt--------g--r~im~  340 (459)
T KOG0272|consen  292 --------------------TKSELLLQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRT--------G--RCIMF  340 (459)
T ss_pred             --------------------cchhhHhhcccccccceeEecCCC-ceeeccCccchhheeeccc--------C--cEEEE
Confidence                                123444567899999999999999 6999999999999999998        3  44778


Q ss_pred             EecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEE
Q 020480          174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL  253 (325)
Q Consensus       174 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~  253 (325)
                      +.+|..+|.+++|+|+|- .++||+.|++++|||++..      ..+.++.+|.+-|+.|+|+|....+|+|++.|++++
T Consensus       341 L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r------~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~k  413 (459)
T KOG0272|consen  341 LAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMR------SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVK  413 (459)
T ss_pred             ecccccceeeEeECCCce-EEeecCCCCcEEEeeeccc------ccceecccccchhhheEecccCCeEEEEcccCccee
Confidence            999999999999999998 8999999999999999987      457888999999999999996668999999999999


Q ss_pred             EEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeee
Q 020480          254 IWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRH  299 (325)
Q Consensus       254 iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~  299 (325)
                      ||..++..   ++.++.+|.+.|.+++.++++.+  +++.|.++++|.
T Consensus       414 iWs~~~~~---~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  414 IWSTRTWS---PLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             eecCCCcc---cchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            99999988   59999999999999999999974  899999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=6.1e-30  Score=213.46  Aligned_cols=209  Identities=19%  Similarity=0.225  Sum_probs=176.1

Q ss_pred             HhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCC
Q 020480           34 LVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCAN  113 (325)
Q Consensus        34 ~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (325)
                      ++++...+=|...+.|+++..          .++.|+..+     ..++|+.  |                        .
T Consensus       168 ~~SQ~gd~rPis~~~fS~ds~----------~laT~swsG-----~~kvW~~--~------------------------~  206 (459)
T KOG0272|consen  168 VCSQVGDTRPISGCSFSRDSK----------HLATGSWSG-----LVKVWSV--P------------------------Q  206 (459)
T ss_pred             hhhhccCCCcceeeEeecCCC----------eEEEeecCC-----ceeEeec--C------------------------C
Confidence            444555555777788887764          466666644     3555544  2                        2


Q ss_pred             CceEEEEEeccCCCeeEEEecCC-CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCC
Q 020480          114 GKVQIIQQINHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG  192 (325)
Q Consensus       114 ~~~~~~~~~~h~~~v~~v~~~~~-~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~  192 (325)
                      . -.+....+|.+.|.++.|+|. ....+|+|+.||+|++|++..          ..++..+.+|...|..++|+|+|. 
T Consensus       207 ~-~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~----------e~~l~~l~gH~~RVs~VafHPsG~-  274 (459)
T KOG0272|consen  207 C-NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ----------ETPLQDLEGHLARVSRVAFHPSGK-  274 (459)
T ss_pred             c-ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC----------CcchhhhhcchhhheeeeecCCCc-
Confidence            2 233456789999999999997 356899999999999999987          477888999999999999999999 


Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc
Q 020480          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH  272 (325)
Q Consensus       193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h  272 (325)
                      +|+|++.|.+-++||+++..      .+....+|...|.+++|+|+| .+++|||.|..-+|||+|++++   +..+.+|
T Consensus       275 ~L~TasfD~tWRlWD~~tk~------ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~---im~L~gH  344 (459)
T KOG0272|consen  275 FLGTASFDSTWRLWDLETKS------ELLLQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRC---IMFLAGH  344 (459)
T ss_pred             eeeecccccchhhcccccch------hhHhhcccccccceeEecCCC-ceeeccCccchhheeecccCcE---EEEeccc
Confidence            89999999999999999874      355568999999999999998 6999999999999999999996   9999999


Q ss_pred             CCCeeEEEeCCCCCc--cCCCCceEEeeecceeee
Q 020480          273 QSEVGVSILNASFRL--SHEDTCTCTHRHSRYLLY  305 (325)
Q Consensus       273 ~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~~  305 (325)
                      ..+|.+|+|+|+|..  +||.|++|++|++|....
T Consensus       345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~  379 (459)
T KOG0272|consen  345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE  379 (459)
T ss_pred             ccceeeEeECCCceEEeecCCCCcEEEeeeccccc
Confidence            999999999999984  999999999999988654

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.8e-29  Score=205.41  Aligned_cols=267  Identities=18%  Similarity=0.186  Sum_probs=201.1

Q ss_pred             hhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCC-------CCCCeEEEEEEECC
Q 020480           16 LINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE-------NEPNYLMLAQVQLP   88 (325)
Q Consensus        16 ~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~i~~~~~~   88 (325)
                      .=|.++|+|+.++..-.-+|..|+.=  +++++|+|++...+.........++...+.+       ++...|.-+.++ |
T Consensus       134 sGD~TvR~WD~~TeTp~~t~KgH~~W--VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawe-p  210 (480)
T KOG0271|consen  134 SGDTTVRLWDLDTETPLFTCKGHKNW--VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWE-P  210 (480)
T ss_pred             CCCceEEeeccCCCCcceeecCCccE--EEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeec-c
Confidence            35689999999987766777777754  8899999999877666655555555532221       333445544443 2


Q ss_pred             CCCCCc-ccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCC--CCCCC--
Q 020480           89 LDDSEN-DARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKH--PSKPP--  163 (325)
Q Consensus        89 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~--~~~~~--  163 (325)
                      ...... ..-.....++.+..|+...+.. .....+|+.+|+|++|-.+|  ++++|+.|++|++|+....  ...++  
T Consensus       211 ~hl~p~~r~las~skDg~vrIWd~~~~~~-~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGH  287 (480)
T KOG0271|consen  211 LHLVPPCRRLASSSKDGSVRIWDTKLGTC-VRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGH  287 (480)
T ss_pred             cccCCCccceecccCCCCEEEEEccCceE-EEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhccc
Confidence            211111 1112233445666666655443 34567899999999998766  9999999999999987651  00000  


Q ss_pred             -----------------------------------------------------------------CCCCCCCcEEEecCC
Q 020480          164 -----------------------------------------------------------------LDGACSPDLRLRGHS  178 (325)
Q Consensus       164 -----------------------------------------------------------------~~~~~~~~~~~~~h~  178 (325)
                                                                                       +....+++..+.+|.
T Consensus       288 ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq  367 (480)
T KOG0271|consen  288 AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQ  367 (480)
T ss_pred             chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchh
Confidence                                                                             112233455667899


Q ss_pred             CceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEcc
Q 020480          179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR  258 (325)
Q Consensus       179 ~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~  258 (325)
                      ..|..+.|+|++. ++++++.|.+|++||.+++      +.+.+|++|-..|+.++|+.+. ++|++|+.|.++++||++
T Consensus       368 ~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~tG------k~lasfRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~  439 (480)
T KOG0271|consen  368 ALVNHVSFSPDGR-YIASASFDKSVKLWDGRTG------KFLASFRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVR  439 (480)
T ss_pred             hheeeEEECCCcc-EEEEeecccceeeeeCCCc------chhhhhhhccceeEEEEeccCc-cEEEEcCCCceEEEEEee
Confidence            9999999999999 9999999999999999998      4588899999999999999985 899999999999999999


Q ss_pred             CCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeee
Q 020480          259 TPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRH  299 (325)
Q Consensus       259 ~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~  299 (325)
                      +.+.   ...+.+|...|.++.|+|+|..  +|+.|..+++|.
T Consensus       440 tkKl---~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  440 TKKL---KQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             eeee---cccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            9884   7888999999999999999985  888999988884

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.96  E-value=6.6e-29  Score=221.80  Aligned_cols=220  Identities=17%  Similarity=0.253  Sum_probs=182.3

Q ss_pred             HhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCC
Q 020480           21 YKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYD  100 (325)
Q Consensus        21 ~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~  100 (325)
                      ..+-+.+.+..-..+..|..+  ++.+.|+|+..           +++..    +++..+.+|.+.              
T Consensus       433 ~~~~D~~~~~~~~~L~GH~GP--Vyg~sFsPd~r-----------fLlSc----SED~svRLWsl~--------------  481 (707)
T KOG0263|consen  433 VDMLDDDSSGTSRTLYGHSGP--VYGCSFSPDRR-----------FLLSC----SEDSSVRLWSLD--------------  481 (707)
T ss_pred             hhhccccCCceeEEeecCCCc--eeeeeeccccc-----------ceeec----cCCcceeeeecc--------------
Confidence            455555555555556666544  88888888763           22222    233456666653              


Q ss_pred             cccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc
Q 020480          101 DDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE  180 (325)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~  180 (325)
                                  . .-..+...+|..+|..+.|+|.| .+||+|+.|++.++|....          ..|.+.+.+|.+-
T Consensus       482 ------------t-~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~----------~~PlRifaghlsD  537 (707)
T KOG0263|consen  482 ------------T-WSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDH----------NKPLRIFAGHLSD  537 (707)
T ss_pred             ------------c-ceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeeccc----------CCchhhhcccccc
Confidence                        1 12334445899999999999998 8999999999999999876          6888999999999


Q ss_pred             eEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCC
Q 020480          181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP  260 (325)
Q Consensus       181 v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~  260 (325)
                      |.++.|+|+.. ++++||.|.+|++||+.++      ..++.|.+|.++|.+++|+|.| .+||+|+.||.|.+||+.++
T Consensus       538 V~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G------~~VRiF~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~  609 (707)
T KOG0263|consen  538 VDCVSFHPNSN-YVATGSSDRTVRLWDVSTG------NSVRIFTGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANG  609 (707)
T ss_pred             cceEEECCccc-ccccCCCCceEEEEEcCCC------cEEEEecCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCC
Confidence            99999999998 8999999999999999998      5689999999999999999987 79999999999999999999


Q ss_pred             CCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecceeeec
Q 020480          261 SVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYLLYK  306 (325)
Q Consensus       261 ~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~~~  306 (325)
                      +   ++..+.+|++.|.+|.|+.+|.+  ++|.|+++++||+......
T Consensus       610 ~---~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  610 S---LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             c---chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence            8   48888999999999999999985  8999999999998766554

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2e-28  Score=202.18  Aligned_cols=161  Identities=20%  Similarity=0.291  Sum_probs=146.6

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      .+|.++|.+++|+|++ ..||+|+.|.++++||+.+          ..|.++.++|...|.+++|+|++. .|++|+.||
T Consensus       112 ~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~T----------eTp~~t~KgH~~WVlcvawsPDgk-~iASG~~dg  179 (480)
T KOG0271|consen  112 AGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDT----------ETPLFTCKGHKNWVLCVAWSPDGK-KIASGSKDG  179 (480)
T ss_pred             CCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCC----------CCcceeecCCccEEEEEEECCCcc-hhhccccCC
Confidence            3699999999999988 7999999999999999988          678999999999999999999999 899999999


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecC----CCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR----HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG  277 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  277 (325)
                      +|++||.++++.     ..+.+.+|+..|++++|.|-    ..++||+++.||+++|||+..+.+   +..+.+|+.+|+
T Consensus       180 ~I~lwdpktg~~-----~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~---~~~lsgHT~~VT  251 (480)
T KOG0271|consen  180 SIRLWDPKTGQQ-----IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC---VRTLSGHTASVT  251 (480)
T ss_pred             eEEEecCCCCCc-----ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE---EEEeccCccceE
Confidence            999999998864     46678999999999999883    236899999999999999999885   888999999999


Q ss_pred             EEEeCCCCCc-cCCCCceEEeeecce
Q 020480          278 VSILNASFRL-SHEDTCTCTHRHSRY  302 (325)
Q Consensus       278 ~i~~~p~~~~-~~~~d~~~~~~~~~~  302 (325)
                      ||.|--+|.+ +++.|+++++|+...
T Consensus       252 CvrwGG~gliySgS~DrtIkvw~a~d  277 (480)
T KOG0271|consen  252 CVRWGGEGLIYSGSQDRTIKVWRALD  277 (480)
T ss_pred             EEEEcCCceEEecCCCceEEEEEccc
Confidence            9999988876 999999999997643

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.96  E-value=5.1e-28  Score=216.20  Aligned_cols=164  Identities=16%  Similarity=0.250  Sum_probs=151.3

Q ss_pred             EEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEE
Q 020480          117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (325)
Q Consensus       117 ~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  196 (325)
                      ......+|.++|..+.|+|+. ++|+++++|++|++|++.+          ...+..+.||..+|+++.|+|.|- +|||
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t----------~s~~V~y~GH~~PVwdV~F~P~Gy-YFat  510 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDT----------WSCLVIYKGHLAPVWDVQFAPRGY-YFAT  510 (707)
T ss_pred             eeEEeecCCCceeeeeecccc-cceeeccCCcceeeeeccc----------ceeEEEecCCCcceeeEEecCCce-EEEe
Confidence            334478999999999999998 7999999999999999988          455677889999999999999988 8999


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCe
Q 020480          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (325)
Q Consensus       197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  276 (325)
                      |+.|++.++|.....      .+++.+.+|-+.|.|+.|||+. +++|+||.|.+||+||+.++..   +..+.+|.++|
T Consensus       511 as~D~tArLWs~d~~------~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~---VRiF~GH~~~V  580 (707)
T KOG0263|consen  511 ASHDQTARLWSTDHN------KPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNS---VRIFTGHKGPV  580 (707)
T ss_pred             cCCCceeeeeecccC------CchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcE---EEEecCCCCce
Confidence            999999999998875      6789999999999999999986 8999999999999999999995   89999999999


Q ss_pred             eEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          277 GVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       277 ~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      .+++|+|+|++  +|+.|+.+++||+..
T Consensus       581 ~al~~Sp~Gr~LaSg~ed~~I~iWDl~~  608 (707)
T KOG0263|consen  581 TALAFSPCGRYLASGDEDGLIKIWDLAN  608 (707)
T ss_pred             EEEEEcCCCceEeecccCCcEEEEEcCC
Confidence            99999999996  899999999999865

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.96  E-value=1.3e-26  Score=185.37  Aligned_cols=181  Identities=23%  Similarity=0.318  Sum_probs=154.9

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      -...|..++|+|++ +++|+|+-|....||++.....    .+.....+.+.+|++.+.++.|-+++  .|+|+|.|.++
T Consensus        96 ~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ls~~d~----~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TC  168 (343)
T KOG0286|consen   96 PSSWVMTCAYSPSG-NFVACGGLDNKCSIYPLSTRDA----EGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTC  168 (343)
T ss_pred             CceeEEEEEECCCC-CeEEecCcCceeEEEecccccc----cccceeeeeecCccceeEEEEEcCCC--ceEecCCCceE
Confidence            45689999999999 7999999999999999985211    12334556789999999999999854  59999999999


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCC
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNA  283 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p  283 (325)
                      .+||++++      ..+..|.+|.+.|.+++++|...+.|++|+.|++.++||+|.+.+   ++++.+|.+.|++|.|.|
T Consensus       169 alWDie~g------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c---~qtF~ghesDINsv~ffP  239 (343)
T KOG0286|consen  169 ALWDIETG------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC---VQTFEGHESDINSVRFFP  239 (343)
T ss_pred             EEEEcccc------eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce---eEeecccccccceEEEcc
Confidence            99999998      458889999999999999995568999999999999999999986   999999999999999999


Q ss_pred             CCCc--cCCCCceEEeeecce--ee-------eccCeeEEEeecCCCc
Q 020480          284 SFRL--SHEDTCTCTHRHSRY--LL-------YKFPFFVLVFPLFPSL  320 (325)
Q Consensus       284 ~~~~--~~~~d~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~  320 (325)
                      +|..  +|++|++|+++|+|-  .+       ..+|+.++.|.+...+
T Consensus       240 ~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRl  287 (343)
T KOG0286|consen  240 SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRL  287 (343)
T ss_pred             CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccE
Confidence            9984  999999999999876  22       2466777777766543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.8e-27  Score=184.00  Aligned_cols=211  Identities=20%  Similarity=0.306  Sum_probs=178.0

Q ss_pred             CCceEEEEeeCCCCCCCCCcceEEEEEEec--CCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEE
Q 020480           42 WPSLTVEWLPDREEPPGKDYSVQKMILGTH--TSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQII  119 (325)
Q Consensus        42 ~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (325)
                      ..=++++|+|..+.         ++++++.  -+-.....|.|.+..-                         .+.+...
T Consensus         9 f~GysvqfSPf~~n---------rLavAt~q~yGl~G~G~L~ile~~~-------------------------~~gi~e~   54 (311)
T KOG0277|consen    9 FHGYSVQFSPFVEN---------RLAVATAQHYGLAGNGRLFILEVTD-------------------------PKGIQEC   54 (311)
T ss_pred             cccceeEecccccc---------hhheeehhhcccccCceEEEEecCC-------------------------CCCeEEE
Confidence            44578999998763         4444433  2334556888887641                         2457777


Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ..+.-...+..++|++...+.+++++.||.+++||+..         ...|+..++.|..+|.++.|++..+..++++|.
T Consensus        55 ~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~---------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSW  125 (311)
T KOG0277|consen   55 QSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM---------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSW  125 (311)
T ss_pred             EeeecccceeEeeecCCCcceEEEEecCceEEEeccCC---------CCcchhHHHhhhhheEEeccccccceeEEeecc
Confidence            88889999999999999889999999999999999654         357889999999999999999988888999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS  279 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i  279 (325)
                      |++|++|+...+      ..++++.+|...|+...|+|..++++++++.|+++++||+|....   ...+..|...|.+.
T Consensus       126 D~TiKLW~~~r~------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk---~~~i~ah~~Eil~c  196 (311)
T KOG0277|consen  126 DGTIKLWDPNRP------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK---FMSIEAHNSEILCC  196 (311)
T ss_pred             CCceEeecCCCC------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc---eeEEEeccceeEee
Confidence            999999999876      458889999999999999999999999999999999999998764   44489999999999


Q ss_pred             EeCCCCC---ccCCCCceEEeeecceee
Q 020480          280 ILNASFR---LSHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       280 ~~~p~~~---~~~~~d~~~~~~~~~~~~  304 (325)
                      .|+.-..   .+++.|+.++.||+|.+.
T Consensus       197 dw~ky~~~vl~Tg~vd~~vr~wDir~~r  224 (311)
T KOG0277|consen  197 DWSKYNHNVLATGGVDNLVRGWDIRNLR  224 (311)
T ss_pred             cccccCCcEEEecCCCceEEEEehhhcc
Confidence            9998554   389999999999998765

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.95  E-value=6.8e-28  Score=200.49  Aligned_cols=224  Identities=18%  Similarity=0.260  Sum_probs=173.9

Q ss_pred             CCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCC----------------CCCCeEEEEEEECCCCCCCcccCCCCccc
Q 020480           40 LEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE----------------NEPNYLMLAQVQLPLDDSENDARHYDDDR  103 (325)
Q Consensus        40 ~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~i~i~~~~~~~~~~~~~~~~~~~~~  103 (325)
                      ..-|+-.|.|.|++.          ++++|+++++                +++.-+.-+.+. +.+.--    -..+..
T Consensus        95 vkc~V~~v~WtPeGR----------RLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws-~~g~wm----iSgD~g  159 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGR----------RLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWS-HNGTWM----ISGDKG  159 (464)
T ss_pred             cccceeeEEEcCCCc----------eeEeecccccEEEecCceeeHHHHhhhhcccceeEEEc-cCCCEE----EEcCCC
Confidence            455778899999874          6778877643                233333333332 100000    012333


Q ss_pred             CCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEE
Q 020480          104 SDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG  183 (325)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  183 (325)
                      +-++.|...-..++.+ ...|...|.+++|+|.+ ..|++|+.||+|+|||...          .+....+.+|.-.|.+
T Consensus       160 G~iKyWqpnmnnVk~~-~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~----------~kee~vL~GHgwdVks  227 (464)
T KOG0284|consen  160 GMIKYWQPNMNNVKII-QAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRM----------PKEERVLRGHGWDVKS  227 (464)
T ss_pred             ceEEecccchhhhHHh-hHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccC----------CchhheeccCCCCcce
Confidence            4555554444333332 22356999999999966 7999999999999999987          4555668999999999


Q ss_pred             EEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC
Q 020480          184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS  263 (325)
Q Consensus       184 l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  263 (325)
                      ++|+|... ++++|+.|..|++||.+++      .++.++.+|+..|..+.|+|++ ++|+++|.|..+++||+|+.+. 
T Consensus       228 vdWHP~kg-LiasgskDnlVKlWDprSg------~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkE-  298 (464)
T KOG0284|consen  228 VDWHPTKG-LIASGSKDNLVKLWDPRSG------SCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKE-  298 (464)
T ss_pred             eccCCccc-eeEEccCCceeEeecCCCc------chhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHH-
Confidence            99999987 9999999999999999998      6788889999999999999997 8999999999999999997774 


Q ss_pred             CCeeEeeccCCCeeEEEeCCCCC--c-cCCCCceEEeeecc
Q 020480          264 KPVQSVVAHQSEVGVSILNASFR--L-SHEDTCTCTHRHSR  301 (325)
Q Consensus       264 ~~~~~~~~h~~~v~~i~~~p~~~--~-~~~~d~~~~~~~~~  301 (325)
                        +.++.+|+..|+++.|+|-..  + +++.|+.+..|.+.
T Consensus       299 --l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  299 --LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             --HHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence              889999999999999999443  3 89999999999875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.3e-26  Score=181.99  Aligned_cols=167  Identities=17%  Similarity=0.254  Sum_probs=149.6

Q ss_pred             EEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEE
Q 020480          117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (325)
Q Consensus       117 ~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  196 (325)
                      .+....+|..+|.++.|++.....+++++.|++|++|+...          .+.+.++.+|...|....|+|..++++++
T Consensus        96 Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r----------~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas  165 (311)
T KOG0277|consen   96 PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR----------PNSVQTFNGHNSCIYQAAFSPHIPNLFAS  165 (311)
T ss_pred             chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC----------CcceEeecCCccEEEEEecCCCCCCeEEE
Confidence            34445679999999999998778899999999999999876          46688999999999999999999999999


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCe
Q 020480          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (325)
Q Consensus       197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  276 (325)
                      +|.|+.+++||++...+      ...+..|...+.++.|+..+.++++||+.|+.||.||+|+.+.  |+..+.+|.-.|
T Consensus       166 ~Sgd~~l~lwdvr~~gk------~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~--pl~eL~gh~~AV  237 (311)
T KOG0277|consen  166 ASGDGTLRLWDVRSPGK------FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT--PLFELNGHGLAV  237 (311)
T ss_pred             ccCCceEEEEEecCCCc------eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc--cceeecCCceEE
Confidence            99999999999998743      2337889999999999998889999999999999999999886  899999999999


Q ss_pred             eEEEeCCCCC---ccCCCCceEEeeecc
Q 020480          277 GVSILNASFR---LSHEDTCTCTHRHSR  301 (325)
Q Consensus       277 ~~i~~~p~~~---~~~~~d~~~~~~~~~  301 (325)
                      ..|+|+|...   .++++|.++++|+..
T Consensus       238 Rkvk~Sph~~~lLaSasYDmT~riw~~~  265 (311)
T KOG0277|consen  238 RKVKFSPHHASLLASASYDMTVRIWDPE  265 (311)
T ss_pred             EEEecCcchhhHhhhccccceEEecccc
Confidence            9999999765   399999999999864

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.95  E-value=6.4e-26  Score=181.46  Aligned_cols=158  Identities=22%  Similarity=0.319  Sum_probs=140.1

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ..+|.+.+.|+.|-+++  .|++++.|.+.-+||+++          .+.+..+.+|.+-|.+|+++|...+.+++|+.|
T Consensus       141 l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~----------g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD  208 (343)
T KOG0286|consen  141 LAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIET----------GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCD  208 (343)
T ss_pred             ecCccceeEEEEEcCCC--ceEecCCCceEEEEEccc----------ceEEEEecCCcccEEEEecCCCCCCeEEecccc
Confidence            45799999999999965  699999999999999998          455778999999999999999444489999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee--ccCCCeeE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV--AHQSEVGV  278 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~  278 (325)
                      +..++||+|.+      .++++|.+|.+.|++++|.|+| .-|++|++|++.|+||+|....   +..+.  ....+|++
T Consensus       209 ~~aklWD~R~~------~c~qtF~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~---~a~ys~~~~~~gitS  278 (343)
T KOG0286|consen  209 KSAKLWDVRSG------QCVQTFEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQE---LAVYSHDSIICGITS  278 (343)
T ss_pred             cceeeeeccCc------ceeEeecccccccceEEEccCC-CeeeecCCCceeEEEeecCCcE---EeeeccCcccCCcee
Confidence            99999999998      6799999999999999999998 6999999999999999999874   55553  33468999


Q ss_pred             EEeCCCCCc--cCCCCceEEeeec
Q 020480          279 SILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       279 i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                      ++|+..|++  .|..|.+|.+||.
T Consensus       279 v~FS~SGRlLfagy~d~~c~vWDt  302 (343)
T KOG0286|consen  279 VAFSKSGRLLFAGYDDFTCNVWDT  302 (343)
T ss_pred             EEEcccccEEEeeecCCceeEeec
Confidence            999999996  7789999999986

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=7.1e-26  Score=179.41  Aligned_cols=218  Identities=19%  Similarity=0.261  Sum_probs=175.2

Q ss_pred             HHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCC
Q 020480           31 LYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFG  110 (325)
Q Consensus        31 ~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (325)
                      ++..+..|+..  +++++|.|..-          +++    ++.+.+..+.|+...-+                      
T Consensus         6 ~~~~~~gh~~r--~W~~awhp~~g----------~il----Ascg~Dk~vriw~~~~~----------------------   47 (312)
T KOG0645|consen    6 LEQKLSGHKDR--VWSVAWHPGKG----------VIL----ASCGTDKAVRIWSTSSG----------------------   47 (312)
T ss_pred             eEEeecCCCCc--EEEEEeccCCc----------eEE----EeecCCceEEEEecCCC----------------------
Confidence            34456666664  89999999631          122    23345568888866311                      


Q ss_pred             CCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCC
Q 020480          111 CANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK  190 (325)
Q Consensus       111 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  190 (325)
                       ..-.++.+..-+|+..|..++|+|.| ++||+|+.|.++.||.-..        +..+.+.++.||...|.+++|+++|
T Consensus        48 -~s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~--------~efecv~~lEGHEnEVK~Vaws~sG  117 (312)
T KOG0645|consen   48 -DSWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASFDATVVIWKKED--------GEFECVATLEGHENEVKCVAWSASG  117 (312)
T ss_pred             -CcEEEEEeccccchheeeeeeecCCC-cEEEEeeccceEEEeecCC--------CceeEEeeeeccccceeEEEEcCCC
Confidence             01122222233699999999999999 6999999999999998776        5566788999999999999999999


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee
Q 020480          191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV  270 (325)
Q Consensus       191 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  270 (325)
                      . +||+|++|.+|.||.+.....   +.+...++.|...|-.+.|||.. -+|++++.|.+|++|+-........++++.
T Consensus       118 ~-~LATCSRDKSVWiWe~deddE---fec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~  192 (312)
T KOG0645|consen  118 N-YLATCSRDKSVWIWEIDEDDE---FECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLD  192 (312)
T ss_pred             C-EEEEeeCCCeEEEEEecCCCc---EEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEec
Confidence            9 999999999999999985433   46788899999999999999985 699999999999999988555456789999


Q ss_pred             ccCCCeeEEEeCCCCC-c-cCCCCceEEeeecc
Q 020480          271 AHQSEVGVSILNASFR-L-SHEDTCTCTHRHSR  301 (325)
Q Consensus       271 ~h~~~v~~i~~~p~~~-~-~~~~d~~~~~~~~~  301 (325)
                      +|...|.+++|++.|. + ++++|+++++|...
T Consensus       193 g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  193 GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             CccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence            9999999999999884 4 99999999999743

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.94  E-value=2.2e-25  Score=188.64  Aligned_cols=254  Identities=19%  Similarity=0.226  Sum_probs=179.5

Q ss_pred             hhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCC-CCc
Q 020480           16 LINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDD-SEN   94 (325)
Q Consensus        16 ~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~-~~~   94 (325)
                      ..+-++|||+++.. +-..+.+|+.+  ++++.|...++...........+++...+..      ...++.+.... .+.
T Consensus       254 ~~~G~~riw~~~G~-l~~tl~~HkgP--I~slKWnk~G~yilS~~vD~ttilwd~~~g~------~~q~f~~~s~~~lDV  324 (524)
T KOG0273|consen  254 SEDGEARIWNKDGN-LISTLGQHKGP--IFSLKWNKKGTYILSGGVDGTTILWDAHTGT------VKQQFEFHSAPALDV  324 (524)
T ss_pred             ecCcEEEEEecCch-hhhhhhccCCc--eEEEEEcCCCCEEEeccCCccEEEEeccCce------EEEeeeeccCCccce
Confidence            46788999999885 44588888865  9999999998755433333333333332221      00111111111 000


Q ss_pred             ---ccC--CCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCC
Q 020480           95 ---DAR--HYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACS  169 (325)
Q Consensus        95 ---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~  169 (325)
                         +..  .....++-+..+... .+-......+|.++|+++.|+|.+ .+|++++.|++++||+...          ..
T Consensus       325 dW~~~~~F~ts~td~~i~V~kv~-~~~P~~t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~----------~~  392 (524)
T KOG0273|consen  325 DWQSNDEFATSSTDGCIHVCKVG-EDRPVKTFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQ----------SN  392 (524)
T ss_pred             EEecCceEeecCCCceEEEEEec-CCCcceeeecccCceEEEEECCCC-ceEEEecCCCeeEeeecCC----------Cc
Confidence               000  011111112111111 111223456799999999999999 7999999999999999765          34


Q ss_pred             CcEEEecCCCceEEEEecCCCC--------CeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCc
Q 020480          170 PDLRLRGHSTEGYGLSWSKFKE--------GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEY  241 (325)
Q Consensus       170 ~~~~~~~h~~~v~~l~~~p~~~--------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  241 (325)
                      ....+.+|+..|+.+.|+|.++        ..+++++.|++|++||+..+      .+++.|..|..+|++++|+|++ .
T Consensus       393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g------v~i~~f~kH~~pVysvafS~~g-~  465 (524)
T KOG0273|consen  393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG------VPIHTLMKHQEPVYSVAFSPNG-R  465 (524)
T ss_pred             chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC------ceeEeeccCCCceEEEEecCCC-c
Confidence            4667889999999999999863        36999999999999999988      6799999999999999999997 7


Q ss_pred             EEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       242 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      ++|+|+.||.|++|+.++++.   ++.+.+ .+.|..++|+..|..  .+..|+.+++-++|
T Consensus       466 ylAsGs~dg~V~iws~~~~~l---~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  466 YLASGSLDGCVHIWSTKTGKL---VKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             EEEecCCCCeeEeccccchhe---eEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            999999999999999999984   676654 566999999998874  34456666665554

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.94  E-value=3.2e-25  Score=187.75  Aligned_cols=206  Identities=17%  Similarity=0.289  Sum_probs=168.9

Q ss_pred             CceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEe
Q 020480           43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQI  122 (325)
Q Consensus        43 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (325)
                      .+++++|..++.          .+++|....     ++.||+..                           +. .+...-
T Consensus       237 dVT~L~Wn~~G~----------~LatG~~~G-----~~riw~~~---------------------------G~-l~~tl~  273 (524)
T KOG0273|consen  237 DVTSLDWNNDGT----------LLATGSEDG-----EARIWNKD---------------------------GN-LISTLG  273 (524)
T ss_pred             CcceEEecCCCC----------eEEEeecCc-----EEEEEecC---------------------------ch-hhhhhh
Confidence            478899988875          466666544     67777652                           11 111234


Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC-------------------------------CCCCCCCc
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP-------------------------------LDGACSPD  171 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~-------------------------------~~~~~~~~  171 (325)
                      .|.++|.+++|+..| ++|++++.||++.+||.........                               .-+...|+
T Consensus       274 ~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~  352 (524)
T KOG0273|consen  274 QHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPV  352 (524)
T ss_pred             ccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcc
Confidence            699999999999999 7999999999999999854321100                               11334677


Q ss_pred             EEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCC--------cEE
Q 020480          172 LRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE--------YLF  243 (325)
Q Consensus       172 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~--------~~l  243 (325)
                      .++.+|.++|.++.|+|.+. +|+|||.|++++||.....      .+.+.+.+|+..|+.+.|+|.++        ..+
T Consensus       353 ~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~~------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l  425 (524)
T KOG0273|consen  353 KTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQS------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLML  425 (524)
T ss_pred             eeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCCC------cchhhhhhhccceeeEeecCCCCccCCCcCCceE
Confidence            88999999999999999999 9999999999999998776      46778899999999999999753        578


Q ss_pred             EEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          244 GSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       244 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      ++++.|++|++||+..+.   +++.+..|+.+|.+++|+|+|++  +|+.|+.+.+|+.+.
T Consensus       426 ~sas~dstV~lwdv~~gv---~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~  483 (524)
T KOG0273|consen  426 ASASFDSTVKLWDVESGV---PIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT  483 (524)
T ss_pred             EEeecCCeEEEEEccCCc---eeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence            999999999999999998   59999899999999999999996  899999999998755

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.94  E-value=4.9e-25  Score=175.33  Aligned_cols=163  Identities=15%  Similarity=0.195  Sum_probs=143.8

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ...+|...|+.+..++++ ++.++++.|+++++||+..          .++.+.|.+|+.-|.+++|++++. .++||+.
T Consensus        58 ~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~----------g~~t~~f~GH~~dVlsva~s~dn~-qivSGSr  125 (315)
T KOG0279|consen   58 RLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLAT----------GESTRRFVGHTKDVLSVAFSTDNR-QIVSGSR  125 (315)
T ss_pred             eeeccceEecceEEccCC-ceEEeccccceEEEEEecC----------CcEEEEEEecCCceEEEEecCCCc-eeecCCC
Confidence            455799999999999999 7999999999999999987          366888999999999999999998 8999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecC--CccEEEEEeecCC-CcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCe
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVH--EGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~v~~v~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  276 (325)
                      |.+|++|++...       +..+...+  +..|.+++|+|+. ..+|++++.|++|++||+++.+.   ...+.+|.+.+
T Consensus       126 DkTiklwnt~g~-------ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l---~~~~~gh~~~v  195 (315)
T KOG0279|consen  126 DKTIKLWNTLGV-------CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL---RTTFIGHSGYV  195 (315)
T ss_pred             cceeeeeeeccc-------EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch---hhccccccccE
Confidence            999999999875       33333333  7899999999973 36899999999999999999884   77888999999


Q ss_pred             eEEEeCCCCCc--cCCCCceEEeeecceee
Q 020480          277 GVSILNASFRL--SHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       277 ~~i~~~p~~~~--~~~~d~~~~~~~~~~~~  304 (325)
                      +.++++|+|.+  +|+.|+.+.+|+++.-.
T Consensus       196 ~t~~vSpDGslcasGgkdg~~~LwdL~~~k  225 (315)
T KOG0279|consen  196 NTVTVSPDGSLCASGGKDGEAMLWDLNEGK  225 (315)
T ss_pred             EEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence            99999999997  89999999999986643

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.94  E-value=6.8e-27  Score=191.19  Aligned_cols=220  Identities=16%  Similarity=0.222  Sum_probs=183.4

Q ss_pred             hhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480           14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE   93 (325)
Q Consensus        14 ~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~   93 (325)
                      +.+.|++||||++|+.++...+..|+..  ++.+++...            .++.|+.     +..+.+|+++--     
T Consensus       212 SGlrDnTikiWD~n~~~c~~~L~GHtGS--VLCLqyd~r------------viisGSS-----DsTvrvWDv~tg-----  267 (499)
T KOG0281|consen  212 SGLRDNTIKIWDKNSLECLKILTGHTGS--VLCLQYDER------------VIVSGSS-----DSTVRVWDVNTG-----  267 (499)
T ss_pred             cccccCceEEeccccHHHHHhhhcCCCc--EEeeeccce------------EEEecCC-----CceEEEEeccCC-----
Confidence            5678999999999999999999999987  777777652            3444443     347999988511     


Q ss_pred             cccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE
Q 020480           94 NDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR  173 (325)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~  173 (325)
                                          ..++  ..+.|...|..+.|+.   .++++++.|.++.+||+..+.       .....+.
T Consensus       268 --------------------e~l~--tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps-------~it~rrV  315 (499)
T KOG0281|consen  268 --------------------EPLN--TLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPT-------DITLRRV  315 (499)
T ss_pred             --------------------chhh--HHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCch-------HHHHHHH
Confidence                                1122  3578999999999987   589999999999999998621       1122345


Q ss_pred             EecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEE
Q 020480          174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL  253 (325)
Q Consensus       174 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~  253 (325)
                      +.||..+|..+.|+.  . ++++++.|.+|++|++.++      .+++++.+|..+|-|+.+.  + .++++|+.|.+|+
T Consensus       316 LvGHrAaVNvVdfd~--k-yIVsASgDRTikvW~~st~------efvRtl~gHkRGIAClQYr--~-rlvVSGSSDntIR  383 (499)
T KOG0281|consen  316 LVGHRAAVNVVDFDD--K-YIVSASGDRTIKVWSTSTC------EFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIR  383 (499)
T ss_pred             Hhhhhhheeeecccc--c-eEEEecCCceEEEEeccce------eeehhhhcccccceehhcc--C-eEEEecCCCceEE
Confidence            789999999999974  3 8999999999999999988      5788999999999999885  3 7999999999999


Q ss_pred             EEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCccCCCCceEEeeecceee
Q 020480          254 IWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       254 iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~~~~~  304 (325)
                      +||+..+.+   +..+++|..-|.+|.|+....++|++||++++|++..-.
T Consensus       384 lwdi~~G~c---LRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  384 LWDIECGAC---LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             EEeccccHH---HHHHhchHHhhhheeecCceeeeccccceEEEEeccccc
Confidence            999999996   889999999999999999888899999999999986543

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.94  E-value=3.4e-25  Score=173.62  Aligned_cols=232  Identities=15%  Similarity=0.177  Sum_probs=178.4

Q ss_pred             hhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480           14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE   93 (325)
Q Consensus        14 ~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~   93 (325)
                      +...|.+||.|...++.+|..+-....  .+-.++..|+...          ++.+      ....|.+++++-.     
T Consensus        15 sA~YDhTIRfWqa~tG~C~rTiqh~ds--qVNrLeiTpdk~~----------LAaa------~~qhvRlyD~~S~-----   71 (311)
T KOG0315|consen   15 SAGYDHTIRFWQALTGICSRTIQHPDS--QVNRLEITPDKKD----------LAAA------GNQHVRLYDLNSN-----   71 (311)
T ss_pred             eccCcceeeeeehhcCeEEEEEecCcc--ceeeEEEcCCcch----------hhhc------cCCeeEEEEccCC-----
Confidence            456889999999999999876544332  4667888887642          2221      2236777777411     


Q ss_pred             cccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE
Q 020480           94 NDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR  173 (325)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~  173 (325)
                                         .+ .......+|...|+++.|..+| +.+++|++||+++|||++..        ..   ..
T Consensus        72 -------------------np-~Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~--------~~---qR  119 (311)
T KOG0315|consen   72 -------------------NP-NPVATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSL--------SC---QR  119 (311)
T ss_pred             -------------------CC-CceeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCc--------cc---ch
Confidence                               11 1333456799999999999999 89999999999999999971        11   22


Q ss_pred             EecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCC----------------------------------------
Q 020480          174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK----------------------------------------  213 (325)
Q Consensus       174 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~----------------------------------------  213 (325)
                      .-.|.++|.++..+|+.. .|++|..+|.|++||++....                                        
T Consensus       120 ~~~~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~  198 (311)
T KOG0315|consen  120 NYQHNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN  198 (311)
T ss_pred             hccCCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence            234668888888888877 788888888888888876521                                        


Q ss_pred             ---CCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--c
Q 020480          214 ---NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--S  288 (325)
Q Consensus       214 ---~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~  288 (325)
                         ...+.++..+++|+..+..+.++|++ .+||++|.|.+++||+....-  +.-..+.+|...++..+|+.+|++  +
T Consensus       199 ~~~~s~l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~~--kle~~l~gh~rWvWdc~FS~dg~YlvT  275 (311)
T KOG0315|consen  199 HQTASELEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDFF--KLELVLTGHQRWVWDCAFSADGEYLVT  275 (311)
T ss_pred             CCccccceEhhheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCce--eeEEEeecCCceEEeeeeccCccEEEe
Confidence               12234677889999999999999997 699999999999999999872  246677899999999999999996  8


Q ss_pred             CCCCceEEeeecceee
Q 020480          289 HEDTCTCTHRHSRYLL  304 (325)
Q Consensus       289 ~~~d~~~~~~~~~~~~  304 (325)
                      ++.|.+.++|++..-.
T Consensus       276 assd~~~rlW~~~~~k  291 (311)
T KOG0315|consen  276 ASSDHTARLWDLSAGK  291 (311)
T ss_pred             cCCCCceeecccccCc
Confidence            9999999999986543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.7e-25  Score=195.38  Aligned_cols=227  Identities=16%  Similarity=0.253  Sum_probs=187.6

Q ss_pred             hhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480           14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE   93 (325)
Q Consensus        14 ~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~   93 (325)
                      -.+.+..+.||+-++..+...+....  -|+.+..|.+..+          =+++|+...     +|.+++.+       
T Consensus        30 a~LynG~V~IWnyetqtmVksfeV~~--~PvRa~kfiaRkn----------Wiv~GsDD~-----~IrVfnyn-------   85 (794)
T KOG0276|consen   30 AALYNGDVQIWNYETQTMVKSFEVSE--VPVRAAKFIARKN----------WIVTGSDDM-----QIRVFNYN-------   85 (794)
T ss_pred             EeeecCeeEEEecccceeeeeeeecc--cchhhheeeeccc----------eEEEecCCc-----eEEEEecc-------
Confidence            34567788899988877665555544  4577777777653          456666533     77777664       


Q ss_pred             cccCCCCcccCCCCCCCCCCCceE-EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE
Q 020480           94 NDARHYDDDRSDFGGFGCANGKVQ-IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL  172 (325)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~  172 (325)
                                           .++ ......|...|.+++.+|..+ ++.+++.|-.|++|+...         .+....
T Consensus        86 ---------------------t~ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~---------~wa~~q  134 (794)
T KOG0276|consen   86 ---------------------TGEKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWEN---------EWACEQ  134 (794)
T ss_pred             ---------------------cceeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccC---------ceeeee
Confidence                                 122 233457999999999999985 899999999999999986         356678


Q ss_pred             EEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCC-CcEEEEEecCCc
Q 020480          173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQY  251 (325)
Q Consensus       173 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~s~~~dg~  251 (325)
                      ++.||+..|.+++|+|..++.++|++.|++|+||.+...      .+..++.+|...|+++.+-+-+ ..+++||++|.+
T Consensus       135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t  208 (794)
T KOG0276|consen  135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT  208 (794)
T ss_pred             EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC------CCceeeeccccCcceEEeccCCCcceEEecCCCce
Confidence            899999999999999999999999999999999999876      5677889999999999998744 358999999999


Q ss_pred             EEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecceee
Q 020480          252 LLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       252 i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~  304 (325)
                      ++|||..+..|   ++++.+|..-|+.+.|+|.-.+  +|+.||++++|....+.
T Consensus       209 iKvWDyQtk~C---V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~  260 (794)
T KOG0276|consen  209 IKVWDYQTKSC---VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK  260 (794)
T ss_pred             EEEeecchHHH---HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCccee
Confidence            99999999996   9999999999999999998775  99999999999876543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.7e-25  Score=188.16  Aligned_cols=251  Identities=20%  Similarity=0.240  Sum_probs=188.8

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCC--Cc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDS--EN   94 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~--~~   94 (325)
                      ..-|+.+++...+-+| +.|.+-++.+.++++|+..+.   ...-....+++|++.+     .|.||++.+-..-.  ..
T Consensus       150 s~LEvYVyn~~e~nlY-vHHD~ilpafPLC~ewld~~~---~~~~~gNyvAiGtmdp-----~IeIWDLDI~d~v~P~~~  220 (463)
T KOG0270|consen  150 SYLEVYVYNEEEENLY-VHHDFILPAFPLCIEWLDHGS---KSGGAGNYVAIGTMDP-----EIEIWDLDIVDAVLPCVT  220 (463)
T ss_pred             eEEEEEEEcCCCccee-EecceeccCcchhhhhhhcCC---CCCCCcceEEEeccCc-----eeEEecccccccccccee
Confidence            3467888888888898 555666677779999998732   2222345788999876     68899886431100  00


Q ss_pred             ccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE
Q 020480           95 DARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL  174 (325)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  174 (325)
                      -.+......       ...++ +-...-+|+.+|.++.|+..-.++||+|+.|.+|.+||+.+          .++..++
T Consensus       221 LGs~~sk~~-------~k~~k-~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~----------g~p~~s~  282 (463)
T KOG0270|consen  221 LGSKASKKK-------KKKGK-RSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT----------GKPKSSI  282 (463)
T ss_pred             echhhhhhh-------hhhcc-cccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC----------CCcceeh
Confidence            000000000       00001 11112358999999999998778999999999999999998          5667788


Q ss_pred             ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEE
Q 020480          175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI  254 (325)
Q Consensus       175 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~i  254 (325)
                      ..|.+.|.++.|+|..+..|++|+.|++|.+.|+|.....   .....   -.+.|-.++|+|..++.++++..||+|+-
T Consensus       283 ~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s---~~~wk---~~g~VEkv~w~~~se~~f~~~tddG~v~~  356 (463)
T KOG0270|consen  283 THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS---GKEWK---FDGEVEKVAWDPHSENSFFVSTDDGTVYY  356 (463)
T ss_pred             hhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc---CceEE---eccceEEEEecCCCceeEEEecCCceEEe
Confidence            8899999999999999989999999999999999963221   11222   34679999999998899999999999999


Q ss_pred             EEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--c-cCCCCceEEeeecce
Q 020480          255 WDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--L-SHEDTCTCTHRHSRY  302 (325)
Q Consensus       255 wd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~-~~~~d~~~~~~~~~~  302 (325)
                      +|+|....  ++.++++|.++|.+|++++.-.  + +++.|+.+++|++..
T Consensus       357 ~D~R~~~~--~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  357 FDIRNPGK--PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             eecCCCCC--ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence            99999864  8999999999999999997644  3 899999999998644

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=3.6e-24  Score=180.68  Aligned_cols=179  Identities=17%  Similarity=0.262  Sum_probs=155.5

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      +..+|++.-..++|++.....+++|+.|+.|++||+.......   ....+...+.+|.+.|..++|++....+|++++.
T Consensus       172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~---~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d  248 (422)
T KOG0264|consen  172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED---KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD  248 (422)
T ss_pred             EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC---ccccceEEeecCCcceehhhccccchhhheeecC
Confidence            4578888888999999877799999999999999998743321   2345667789999999999999999889999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS  279 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i  279 (325)
                      |+.+.|||+|....    .+.+...+|.+.|++++|+|.+..+||+||.|++|++||+|..+.  +++++.+|...|.+|
T Consensus       249 d~~L~iwD~R~~~~----~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V  322 (422)
T KOG0264|consen  249 DGKLMIWDTRSNTS----KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQV  322 (422)
T ss_pred             CCeEEEEEcCCCCC----CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEE
Confidence            99999999997422    456677899999999999999889999999999999999999886  899999999999999


Q ss_pred             EeCCCCC--c-cCCCCceEEeeecceeeecc
Q 020480          280 ILNASFR--L-SHEDTCTCTHRHSRYLLYKF  307 (325)
Q Consensus       280 ~~~p~~~--~-~~~~d~~~~~~~~~~~~~~~  307 (325)
                      .|+|+..  + +++.|+.+.+||+......+
T Consensus       323 ~WSPh~etvLASSg~D~rl~vWDls~ig~eq  353 (422)
T KOG0264|consen  323 EWSPHNETVLASSGTDRRLNVWDLSRIGEEQ  353 (422)
T ss_pred             EeCCCCCceeEecccCCcEEEEecccccccc
Confidence            9999876  2 77899999999987766554

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=6.6e-25  Score=194.86  Aligned_cols=227  Identities=17%  Similarity=0.220  Sum_probs=184.1

Q ss_pred             hhhhHHHHhhhHhcC----hhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCC
Q 020480           14 ERLINEEYKIWKKNT----PFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPL   89 (325)
Q Consensus        14 ~~~~~~~~~iw~~~~----~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~   89 (325)
                      +..+|..+++|+.|.    ..++....+|+..  +..++.+..+.         ..++.+++..     .+++|.+  |.
T Consensus       382 t~sKD~svilWr~~~~~~~~~~~a~~~gH~~s--vgava~~~~~a---------sffvsvS~D~-----tlK~W~l--~~  443 (775)
T KOG0319|consen  382 TGSKDKSVILWRLNNNCSKSLCVAQANGHTNS--VGAVAGSKLGA---------SFFVSVSQDC-----TLKLWDL--PK  443 (775)
T ss_pred             EecCCceEEEEEecCCcchhhhhhhhcccccc--cceeeecccCc---------cEEEEecCCc-----eEEEecC--CC
Confidence            345889999998744    3456666777666  66677754433         3455555533     6788866  32


Q ss_pred             CCCCcccCCCCcccCCCCCCCCCCCceEE---EEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCC
Q 020480           90 DDSENDARHYDDDRSDFGGFGCANGKVQI---IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDG  166 (325)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~  166 (325)
                      .  .       +          ..+++.+   .....|...|++++++|.+ .++|+|+.|.+.++|+++.         
T Consensus       444 s--~-------~----------~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~---------  494 (775)
T KOG0319|consen  444 S--K-------E----------TAFPIVLTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQ---------  494 (775)
T ss_pred             c--c-------c----------ccccceehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccC---------
Confidence            0  0       0          0111221   1234699999999999988 7999999999999999986         


Q ss_pred             CCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEE
Q 020480          167 ACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV  246 (325)
Q Consensus       167 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~  246 (325)
                       .....++.||+..|+++.|+|... +++|+|.|++|+||.+.+.      .|+.++.+|++.|..++|-.++ ..|+||
T Consensus       495 -~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~f------SClkT~eGH~~aVlra~F~~~~-~qliS~  565 (775)
T KOG0319|consen  495 -LRLLGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSISTF------SCLKTFEGHTSAVLRASFIRNG-KQLISA  565 (775)
T ss_pred             -ceEEEEeeCCccceEEEEeccccc-eeEeccCCceEEEEEeccc------eeeeeecCccceeEeeeeeeCC-cEEEec
Confidence             566789999999999999999988 9999999999999999987      7899999999999999999887 688899


Q ss_pred             ecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--ccCCCCceEEeee
Q 020480          247 GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--LSHEDTCTCTHRH  299 (325)
Q Consensus       247 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~~~~~d~~~~~~~  299 (325)
                      +.||-|++|++.+..|   +.++.+|...|++++.+|...  ++|+.|+.+.+|.
T Consensus       566 ~adGliKlWnikt~eC---~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  566 GADGLIKLWNIKTNEC---EMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             cCCCcEEEEeccchhh---hhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            9999999999999997   899999999999999999888  4889999999985

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.93  E-value=3.2e-24  Score=177.23  Aligned_cols=249  Identities=18%  Similarity=0.213  Sum_probs=183.1

Q ss_pred             hhhHHHHhhhHhcChhHHH----HhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCC
Q 020480           15 RLINEEYKIWKKNTPFLYD----LVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLD   90 (325)
Q Consensus        15 ~~~~~~~~iw~~~~~~~y~----~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~   90 (325)
                      ...|+++++|+-|.+.+..    .+..|+..  +-+|+-.+++.          +++-|+.     ++.|.||+..-...
T Consensus       165 as~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~--V~sVsv~~sgt----------r~~SgS~-----D~~lkiWs~~~~~~  227 (423)
T KOG0313|consen  165 ASMDQTLRLWKWNVGENKVKALKVCRGHKRS--VDSVSVDSSGT----------RFCSGSW-----DTMLKIWSVETDEE  227 (423)
T ss_pred             ecCCceEEEEEecCchhhhhHHhHhcccccc--eeEEEecCCCC----------eEEeecc-----cceeeecccCCCcc
Confidence            3478999999998877653    33345544  77788888775          4544443     45788887321111


Q ss_pred             CCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCC
Q 020480           91 DSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSP  170 (325)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~  170 (325)
                      +..++.+.  .....-..-.....+...+..-+|.++|.++.|++.  ..+.+++.|.+|+.||+..        +..  
T Consensus       228 ~~~E~~s~--~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDlet--------g~~--  293 (423)
T KOG0313|consen  228 DELESSSN--RRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLET--------GGL--  293 (423)
T ss_pred             ccccccch--hhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeec--------ccc--
Confidence            11111111  000000000001223344556789999999999994  4789999999999999987        222  


Q ss_pred             cEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC
Q 020480          171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ  250 (325)
Q Consensus       171 ~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg  250 (325)
                      ..++. ....+.+++.+|... +|++|+.|..+++||.|.+...   ...+++.+|++.|.++.|+|.+.+.|++|+.|+
T Consensus       294 ~~~~~-~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs---~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~  368 (423)
T KOG0313|consen  294 KSTLT-TNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGS---VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN  368 (423)
T ss_pred             eeeee-cCcceeEeecccccc-eeeecCCCCceeecCCCCCCCc---eeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence            33333 345789999999877 9999999999999999987542   356788999999999999999999999999999


Q ss_pred             cEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC-ccCCCCceEEeeecc
Q 020480          251 YLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR-LSHEDTCTCTHRHSR  301 (325)
Q Consensus       251 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~-~~~~~d~~~~~~~~~  301 (325)
                      ++++||+|+...  |+..+.+|...|.++.|+..+. ++||.|+++++....
T Consensus       369 t~klWDvRS~k~--plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  369 TVKLWDVRSTKA--PLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             eEEEEEeccCCC--cceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence            999999999875  7999999999999999998754 599999999987654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.93  E-value=5.2e-25  Score=180.72  Aligned_cols=165  Identities=22%  Similarity=0.300  Sum_probs=147.5

Q ss_pred             eEEEEEe-ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeE
Q 020480          116 VQIIQQI-NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL  194 (325)
Q Consensus       116 ~~~~~~~-~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  194 (325)
                      .++.+.+ +|.+.|.|+++.|.+ ..|++|+.|++++|||+.+          .+...++.||...|..+++++..+ ++
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlat----------g~LkltltGhi~~vr~vavS~rHp-Yl  208 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLAT----------GQLKLTLTGHIETVRGVAVSKRHP-YL  208 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEccc----------CeEEEeecchhheeeeeeecccCc-eE
Confidence            3444433 599999999999987 7999999999999999998          344677899999999999999999 89


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC
Q 020480          195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS  274 (325)
Q Consensus       195 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~  274 (325)
                      ++++.|+.|+.||+...      +.++.+.+|-+.|++++.+|.- ..|++|+.|.++||||+|+...   +..+.+|..
T Consensus       209 Fs~gedk~VKCwDLe~n------kvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~---V~~l~GH~~  278 (460)
T KOG0285|consen  209 FSAGEDKQVKCWDLEYN------KVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRAS---VHVLSGHTN  278 (460)
T ss_pred             EEecCCCeeEEEechhh------hhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccce---EEEecCCCC
Confidence            99999999999999987      5688899999999999999986 6999999999999999999884   999999999


Q ss_pred             CeeEEEeCC-CCC-ccCCCCceEEeeecce
Q 020480          275 EVGVSILNA-SFR-LSHEDTCTCTHRHSRY  302 (325)
Q Consensus       275 ~v~~i~~~p-~~~-~~~~~d~~~~~~~~~~  302 (325)
                      +|.++.+.| +++ ++++.|+++++||++.
T Consensus       279 ~V~~V~~~~~dpqvit~S~D~tvrlWDl~a  308 (460)
T KOG0285|consen  279 PVASVMCQPTDPQVITGSHDSTVRLWDLRA  308 (460)
T ss_pred             cceeEEeecCCCceEEecCCceEEEeeecc
Confidence            999999997 444 4999999999999865

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.93  E-value=2.3e-25  Score=185.49  Aligned_cols=222  Identities=19%  Similarity=0.270  Sum_probs=180.5

Q ss_pred             hhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480           14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE   93 (325)
Q Consensus        14 ~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~   93 (325)
                      +.+.+--||+|..|-.-....--.|..  .+..++|+|+..          .++..     +.++.|.||++..|.    
T Consensus       155 SgD~gG~iKyWqpnmnnVk~~~ahh~e--aIRdlafSpnDs----------kF~t~-----SdDg~ikiWdf~~~k----  213 (464)
T KOG0284|consen  155 SGDKGGMIKYWQPNMNNVKIIQAHHAE--AIRDLAFSPNDS----------KFLTC-----SDDGTIKIWDFRMPK----  213 (464)
T ss_pred             EcCCCceEEecccchhhhHHhhHhhhh--hhheeccCCCCc----------eeEEe-----cCCCeEEEEeccCCc----
Confidence            445667789999876544332223322  477899999543          34333     345689999986551    


Q ss_pred             cccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE
Q 020480           94 NDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR  173 (325)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~  173 (325)
                                             +.....+|...|.+++|+|.. .++|+|+.|..|++||.++          ...+.+
T Consensus       214 -----------------------ee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprS----------g~cl~t  259 (464)
T KOG0284|consen  214 -----------------------EERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRS----------GSCLAT  259 (464)
T ss_pred             -----------------------hhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCC----------cchhhh
Confidence                                   112347899999999999987 6999999999999999998          344788


Q ss_pred             EecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEE
Q 020480          174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL  253 (325)
Q Consensus       174 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~  253 (325)
                      +.+|+..|..+.|+|+++ +|+|+|.|..++++|+++.      +.+..+++|+..|+++.|+|-.+.+|.+|+.||.|.
T Consensus       260 lh~HKntVl~~~f~~n~N-~Llt~skD~~~kv~DiR~m------kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv  332 (464)
T KOG0284|consen  260 LHGHKNTVLAVKFNPNGN-WLLTGSKDQSCKVFDIRTM------KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVV  332 (464)
T ss_pred             hhhccceEEEEEEcCCCC-eeEEccCCceEEEEehhHh------HHHHHhhcchhhheeeccccccccceeeccCCCceE
Confidence            899999999999999996 9999999999999999965      457788999999999999999899999999999999


Q ss_pred             EEEccCCCCCCCeeEe-eccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480          254 IWDLRTPSVSKPVQSV-VAHQSEVGVSILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       254 iwd~~~~~~~~~~~~~-~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                      .|.+...+   |+..+ .+|...|++++|+|-|-+  +|+.|.++++|..
T Consensus       333 h~~v~~~~---p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  333 HWVVGLEE---PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             EEeccccc---cccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            99998555   45555 689999999999999986  8999999999964

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.92  E-value=6.6e-24  Score=168.96  Aligned_cols=173  Identities=15%  Similarity=0.168  Sum_probs=143.1

Q ss_pred             CCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe--cCCCce
Q 020480          104 SDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR--GHSTEG  181 (325)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v  181 (325)
                      +.+..|+...+ -...+..+|...|.+++|++++ ..+++|+.|.+|++|+.-.           ....++.  .+...|
T Consensus        85 ~~lrlWDl~~g-~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g-----------~ck~t~~~~~~~~WV  151 (315)
T KOG0279|consen   85 GTLRLWDLATG-ESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLG-----------VCKYTIHEDSHREWV  151 (315)
T ss_pred             ceEEEEEecCC-cEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecc-----------cEEEEEecCCCcCcE
Confidence            34455665565 3445677999999999999998 7999999999999999876           1122333  337899


Q ss_pred             EEEEecCC--CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480          182 YGLSWSKF--KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (325)
Q Consensus       182 ~~l~~~p~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~  259 (325)
                      .++.|+|+  .+ .+++++.|++|++||++..      +..+.+.+|++.++.++++|+| .+.++|+.||.+.+||++.
T Consensus       152 scvrfsP~~~~p-~Ivs~s~DktvKvWnl~~~------~l~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~  223 (315)
T KOG0279|consen  152 SCVRFSPNESNP-IIVSASWDKTVKVWNLRNC------QLRTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNE  223 (315)
T ss_pred             EEEEEcCCCCCc-EEEEccCCceEEEEccCCc------chhhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccC
Confidence            99999999  45 8999999999999999987      4567788999999999999998 6999999999999999999


Q ss_pred             CCCCCCeeEeeccCCCeeEEEeCCCCCc-cCCCCceEEeeecc
Q 020480          260 PSVSKPVQSVVAHQSEVGVSILNASFRL-SHEDTCTCTHRHSR  301 (325)
Q Consensus       260 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~~  301 (325)
                      +++   ++++. |...|++++|+|+... ..+.+..+++|++.
T Consensus       224 ~k~---lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~  262 (315)
T KOG0279|consen  224 GKN---LYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLE  262 (315)
T ss_pred             Cce---eEecc-CCCeEeeEEecCCceeEeeccCCceEEEecc
Confidence            985   66654 7889999999999874 45566679999863

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.92  E-value=1.1e-23  Score=169.32  Aligned_cols=173  Identities=20%  Similarity=0.236  Sum_probs=146.7

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ...+|++.|+.+.|+|+| .+||+|+.|..|.+|++..         .++...++.+|+++|+.+.|.++++ .+++++.
T Consensus        42 ~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~g---------dceN~~~lkgHsgAVM~l~~~~d~s-~i~S~gt  110 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYG---------DCENFWVLKGHSGAVMELHGMRDGS-HILSCGT  110 (338)
T ss_pred             hcCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccc---------cccceeeeccccceeEeeeeccCCC-EEEEecC
Confidence            456899999999999988 7999999999999999764         3555677889999999999999999 8999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC-----------------
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-----------------  262 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-----------------  262 (325)
                      |.+++.||++++      ++++.+++|..-|+++.-+..|+.++.+|+.||++++||+|+...                 
T Consensus       111 Dk~v~~wD~~tG------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d  184 (338)
T KOG0265|consen  111 DKTVRGWDAETG------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD  184 (338)
T ss_pred             CceEEEEecccc------eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecc
Confidence            999999999998      557788899999999986667778889999999999999994221                 


Q ss_pred             ---------------------CCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecceeeeccCe
Q 020480          263 ---------------------SKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYLLYKFPF  309 (325)
Q Consensus       263 ---------------------~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~~~~~~  309 (325)
                                           ....+.+.+|..+|+.+..+|.|..  +-+.|.++++|++|.+.-.++.
T Consensus       185 ~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~  254 (338)
T KOG0265|consen  185 TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRC  254 (338)
T ss_pred             cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCce
Confidence                                 0234556788899999999998874  7788999999999887766653

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=3.6e-23  Score=187.61  Aligned_cols=162  Identities=21%  Similarity=0.273  Sum_probs=141.9

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      .+|...|++++|+|++ .++++|+.|++|++||+..         ....+.++.+|...|++++|+|.++ ++++|+.|+
T Consensus       200 ~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~---------~~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~  268 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKD---------DGRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDG  268 (456)
T ss_pred             cccccceeeeEECCCC-cEEEEecCCceEEEeeccC---------CCeEEEEecCCCCceEEEEecCCCC-EEEEecCCC
Confidence            5799999999999999 6999999999999999944         2345788999999999999999995 999999999


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC--CeeEE
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS--EVGVS  279 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~i  279 (325)
                      +|+|||++.+      .+...+.+|...|++++|++++ ++|++++.|+.|++||+.++... .+..+..+..  +++++
T Consensus       269 tvriWd~~~~------~~~~~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~  340 (456)
T KOG0266|consen  269 TVRIWDVRTG------ECVRKLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKL-CLKLLSGAENSAPVTSV  340 (456)
T ss_pred             cEEEEeccCC------eEEEeeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCcee-eeecccCCCCCCceeEE
Confidence            9999999986      6788999999999999999997 79999999999999999998821 1344444443  59999


Q ss_pred             EeCCCCCc--cCCCCceEEeeecce
Q 020480          280 ILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       280 ~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      +|+|++.+  ++..|+++++|+++.
T Consensus       341 ~fsp~~~~ll~~~~d~~~~~w~l~~  365 (456)
T KOG0266|consen  341 QFSPNGKYLLSASLDRTLKLWDLRS  365 (456)
T ss_pred             EECCCCcEEEEecCCCeEEEEEccC
Confidence            99999995  888999999999874

>PTZ00421 coronin; Provisional

Probab=99.91  E-value=1.1e-22  Score=184.15  Aligned_cols=171  Identities=19%  Similarity=0.311  Sum_probs=139.6

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ..+|.+.|++++|+|.+.++||+|+.||+|++|++.......   ....++..+.+|...|.+++|+|.+.++|++|+.|
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~---~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D  147 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ---NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD  147 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc---ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence            468999999999999443799999999999999997621100   11245678899999999999999876689999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCC-eeEE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE-VGVS  279 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~i  279 (325)
                      +.|+|||++.+      ..+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++.   +..+.+|.+. +..+
T Consensus       148 gtVrIWDl~tg------~~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~---v~tl~~H~~~~~~~~  217 (493)
T PTZ00421        148 MVVNVWDVERG------KAVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTI---VSSVEAHASAKSQRC  217 (493)
T ss_pred             CEEEEEECCCC------eEEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcE---EEEEecCCCCcceEE
Confidence            99999999876      4566788899999999999987 6999999999999999999874   7778888765 4567


Q ss_pred             EeCCCCCc--c----CCCCceEEeeecceee
Q 020480          280 ILNASFRL--S----HEDTCTCTHRHSRYLL  304 (325)
Q Consensus       280 ~~~p~~~~--~----~~~d~~~~~~~~~~~~  304 (325)
                      .|.+++..  +    .+.|+.+++||++...
T Consensus       218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             EEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence            88887542  2    2458899999987543

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.91  E-value=6e-23  Score=168.68  Aligned_cols=202  Identities=18%  Similarity=0.277  Sum_probs=165.8

Q ss_pred             HHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCC
Q 020480           31 LYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFG  110 (325)
Q Consensus        31 ~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (325)
                      ||.++..|.. | +.++++-|..+          -++.|+     .+..|.||++.                        
T Consensus       143 l~rVi~gHlg-W-Vr~vavdP~n~----------wf~tgs-----~DrtikIwDla------------------------  181 (460)
T KOG0285|consen  143 LYRVISGHLG-W-VRSVAVDPGNE----------WFATGS-----ADRTIKIWDLA------------------------  181 (460)
T ss_pred             ehhhhhhccc-e-EEEEeeCCCce----------eEEecC-----CCceeEEEEcc------------------------
Confidence            7777777764 3 56778888653          344443     34478888874                        


Q ss_pred             CCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCC
Q 020480          111 CANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK  190 (325)
Q Consensus       111 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  190 (325)
                        .+++++ ..-+|...|..+++++.. .++++++.|+.|+.||+..          .+.++.+.||-+.|.+++.+|.-
T Consensus       182 --tg~Lkl-tltGhi~~vr~vavS~rH-pYlFs~gedk~VKCwDLe~----------nkvIR~YhGHlS~V~~L~lhPTl  247 (460)
T KOG0285|consen  182 --TGQLKL-TLTGHIETVRGVAVSKRH-PYLFSAGEDKQVKCWDLEY----------NKVIRHYHGHLSGVYCLDLHPTL  247 (460)
T ss_pred             --cCeEEE-eecchhheeeeeeecccC-ceEEEecCCCeeEEEechh----------hhhHHHhccccceeEEEeccccc
Confidence              456665 356799999999999988 4999999999999999987          56688889999999999999998


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee
Q 020480          191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV  270 (325)
Q Consensus       191 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  270 (325)
                      . .|+||+.|.+++|||+++.      ..+..+.+|...|..+.+.|.++ .+++|+.|++|++||++.++.   +.++.
T Consensus       248 d-vl~t~grDst~RvWDiRtr------~~V~~l~GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~agkt---~~tlt  316 (460)
T KOG0285|consen  248 D-VLVTGGRDSTIRVWDIRTR------ASVHVLSGHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAGKT---MITLT  316 (460)
T ss_pred             e-eEEecCCcceEEEeeeccc------ceEEEecCCCCcceeEEeecCCC-ceEEecCCceEEEeeeccCce---eEeee
Confidence            8 8999999999999999987      46889999999999999999875 677999999999999999984   88888


Q ss_pred             ccCCCeeEEEeCCCCCc--cCCCCceEEeee
Q 020480          271 AHQSEVGVSILNASFRL--SHEDTCTCTHRH  299 (325)
Q Consensus       271 ~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~  299 (325)
                      .|+..|.+++.+|...+  +++.| .++.|+
T Consensus       317 ~hkksvral~lhP~e~~fASas~d-nik~w~  346 (460)
T KOG0285|consen  317 HHKKSVRALCLHPKENLFASASPD-NIKQWK  346 (460)
T ss_pred             cccceeeEEecCCchhhhhccCCc-cceecc
Confidence            99999999999997654  44444 344444

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=6.8e-24  Score=174.46  Aligned_cols=223  Identities=17%  Similarity=0.181  Sum_probs=180.4

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.+||+|+..+..+...|-.|...  +.++.|.-.+.           +++.....  .  .+..|++.          
T Consensus       128 ~d~tikv~D~~tg~~e~~LrGHt~s--v~di~~~a~Gk-----------~l~tcSsD--l--~~~LWd~~----------  180 (406)
T KOG0295|consen  128 EDATIKVFDTETGELERSLRGHTDS--VFDISFDASGK-----------YLATCSSD--L--SAKLWDFD----------  180 (406)
T ss_pred             CCceEEEEEccchhhhhhhhccccc--eeEEEEecCcc-----------EEEecCCc--c--chhheeHH----------
Confidence            4678999999999998888888877  66666666552           22222111  1  13333331          


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG  176 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  176 (325)
                                      ...-.+...++|...|.++.|-|-| ..+++++.|.+|+.|++..        +  ..+.++.+
T Consensus       181 ----------------~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~t--------g--~cv~t~~~  233 (406)
T KOG0295|consen  181 ----------------TFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDT--------G--YCVKTFPG  233 (406)
T ss_pred             ----------------HHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEeccc--------c--eeEEeccC
Confidence                            1111112346799999999999998 7999999999999999998        3  44788999


Q ss_pred             CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecC--------------CCcE
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR--------------HEYL  242 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--------------~~~~  242 (325)
                      |...|..++.+.+|. ++++|+.|.++++|-+.+.      .+...+..|.-.|.+++|.|.              +..+
T Consensus       234 h~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~------~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~  306 (406)
T KOG0295|consen  234 HSEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATK------QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQV  306 (406)
T ss_pred             chHhEEEEEecCCee-EEEecCCCceEEEEEeccc------hhhhhhhccccceEEEEecccccCcchhhccCCCCCccE
Confidence            999999999999999 9999999999999999876      566778899999999999873              1248


Q ss_pred             EEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeeccee
Q 020480          243 FGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       243 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~  303 (325)
                      +++++.|++|++||+.++.+   +.++.+|...|..++|+|.|++  ++.+|+++++|+++..
T Consensus       307 l~s~SrDktIk~wdv~tg~c---L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~  366 (406)
T KOG0295|consen  307 LGSGSRDKTIKIWDVSTGMC---LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL  366 (406)
T ss_pred             EEeecccceEEEEeccCCeE---EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc
Confidence            99999999999999999996   9999999999999999999996  8999999999998654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.91  E-value=1.3e-23  Score=173.68  Aligned_cols=241  Identities=17%  Similarity=0.214  Sum_probs=182.6

Q ss_pred             hhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480           14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE   93 (325)
Q Consensus        14 ~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~   93 (325)
                      +..++...|||.+...... .+..|..  |..+++|.--....       ..++.++.     +..|+.|.++.+..   
T Consensus       120 tgsYDg~~riWd~~Gk~~~-~~~Ght~--~ik~v~~v~~n~~~-------~~fvsas~-----Dqtl~Lw~~~~~~~---  181 (423)
T KOG0313|consen  120 TGSYDGTSRIWDLKGKSIK-TIVGHTG--PIKSVAWVIKNSSS-------CLFVSASM-----DQTLRLWKWNVGEN---  181 (423)
T ss_pred             EeecCCeeEEEecCCceEE-EEecCCc--ceeeeEEEecCCcc-------ceEEEecC-----CceEEEEEecCchh---
Confidence            4567889999998775433 4455554  47789998765533       23444443     34788888864411   


Q ss_pred             cccCCCCcccCCCCCCCCCCCceEEE-EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCC------C----
Q 020480           94 NDARHYDDDRSDFGGFGCANGKVQII-QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSK------P----  162 (325)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~------~----  162 (325)
                                           +.+.. ...+|...|-+++..+++ ..+++|+.|.+|.+|+.......      .    
T Consensus       182 ---------------------~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk  239 (423)
T KOG0313|consen  182 ---------------------KVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRK  239 (423)
T ss_pred             ---------------------hhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhh
Confidence                                 11111 123899999999999999 79999999999999993321110      0    


Q ss_pred             -----CCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeec
Q 020480          163 -----PLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL  237 (325)
Q Consensus       163 -----~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p  237 (325)
                           +..+...|+.++.||+.+|.++.|++.  ..+++++.|.+|+.||+.++..      ...+.+ +..+++++.+|
T Consensus       240 ~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~------~~~~~~-~ksl~~i~~~~  310 (423)
T KOG0313|consen  240 KQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGL------KSTLTT-NKSLNCISYSP  310 (423)
T ss_pred             hhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccc------eeeeec-CcceeEeeccc
Confidence                 023456778899999999999999983  3799999999999999998843      444443 45689999999


Q ss_pred             CCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc---cCCCCceEEeeecceee
Q 020480          238 RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL---SHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       238 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~~~~~  304 (325)
                      .. .+||+|+.|..|++||.|++.-..+.+++.+|+..|.++.|+|...+   +++.|+++++||+|...
T Consensus       311 ~~-~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  311 LS-KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             cc-ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence            75 79999999999999999988654456788999999999999998774   99999999999998754

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.4e-22  Score=166.75  Aligned_cols=219  Identities=20%  Similarity=0.229  Sum_probs=179.4

Q ss_pred             hHHHHhhhHhcC-hhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcc
Q 020480           17 INEEYKIWKKNT-PFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEND   95 (325)
Q Consensus        17 ~~~~~~iw~~~~-~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~   95 (325)
                      .+-.+++|+... -.+-..++.|...  +-++.|.|-+..          +     .+...++.|++|+++-        
T Consensus       170 sDl~~~LWd~~~~~~c~ks~~gh~h~--vS~V~f~P~gd~----------i-----lS~srD~tik~We~~t--------  224 (406)
T KOG0295|consen  170 SDLSAKLWDFDTFFRCIKSLIGHEHG--VSSVFFLPLGDH----------I-----LSCSRDNTIKAWECDT--------  224 (406)
T ss_pred             CccchhheeHHHHHHHHHHhcCcccc--eeeEEEEecCCe----------e-----eecccccceeEEeccc--------
Confidence            344489998876 4455666777666  778999997642          2     2233456788887751        


Q ss_pred             cCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe
Q 020480           96 ARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR  175 (325)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  175 (325)
                                         -.......+|...|.-++.+.+| .++|+|+.|.+|++|-+..        ..+  ...++
T Consensus       225 -------------------g~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t--------~~~--k~~lR  274 (406)
T KOG0295|consen  225 -------------------GYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVAT--------KQC--KAELR  274 (406)
T ss_pred             -------------------ceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEecc--------chh--hhhhh
Confidence                               23444566899999999999999 7999999999999999987        323  34577


Q ss_pred             cCCCceEEEEecCCC--------------CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCc
Q 020480          176 GHSTEGYGLSWSKFK--------------EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEY  241 (325)
Q Consensus       176 ~h~~~v~~l~~~p~~--------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  241 (325)
                      .|.-+|-+++|.|..              ...+.+++.|++|++||+.++      .++.++.+|.+.|..++|+|.| .
T Consensus       275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg------~cL~tL~ghdnwVr~~af~p~G-k  347 (406)
T KOG0295|consen  275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG------MCLFTLVGHDNWVRGVAFSPGG-K  347 (406)
T ss_pred             ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC------eEEEEEecccceeeeeEEcCCC-e
Confidence            899999999998752              138999999999999999998      6899999999999999999987 6


Q ss_pred             EEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480          242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       242 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                      +|+++.+|+++++||+++.++   +..+.+|..-|++++|+.+..+  +|+-|.++++|.-
T Consensus       348 yi~ScaDDktlrvwdl~~~~c---mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  348 YILSCADDKTLRVWDLKNLQC---MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EEEEEecCCcEEEEEecccee---eeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            999999999999999999997   8888899999999999987764  8999999999964

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.91  E-value=2.6e-23  Score=178.08  Aligned_cols=197  Identities=17%  Similarity=0.142  Sum_probs=149.8

Q ss_pred             EEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC---------------------------------
Q 020480          117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP---------------------------------  163 (325)
Q Consensus       117 ~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~---------------------------------  163 (325)
                      ..++..+|...|.++++.|.| -.|++|+.|..|++||+.......+                                 
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq  237 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ  237 (641)
T ss_pred             ceEeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence            344556788999999999999 6999999999999999987533221                                 


Q ss_pred             ----------------CCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCC
Q 020480          164 ----------------LDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE  227 (325)
Q Consensus       164 ----------------~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  227 (325)
                                      .+.........+||...+++.+|+|.....|+|++.||++++||+...+............+..
T Consensus       238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R  317 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR  317 (641)
T ss_pred             eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence                            0111111223367999999999999999899999999999999998765321110111122344


Q ss_pred             ccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC--CeeEEEeCCCCCc--cCCCCceEEeeeccee
Q 020480          228 GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS--EVGVSILNASFRL--SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       228 ~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~  303 (325)
                      -.++.++|+|++ ..||+|+.||+|.+|+.+.......+..-.+|..  .|+||+|+++|.+  +-|.|.+.++|++|.+
T Consensus       318 v~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  318 VPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             cCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence            578899999998 5899999999999999977654334455578877  9999999999985  8899999999999887


Q ss_pred             e----------eccCeeEEEee
Q 020480          304 L----------YKFPFFVLVFP  315 (325)
Q Consensus       304 ~----------~~~~~~~~~~~  315 (325)
                      .          ..||.+.+||.
T Consensus       397 kkpL~~~tgL~t~~~~tdc~FS  418 (641)
T KOG0772|consen  397 KKPLNVRTGLPTPFPGTDCCFS  418 (641)
T ss_pred             ccchhhhcCCCccCCCCccccC
Confidence            5          45777777765

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.8e-22  Score=160.26  Aligned_cols=172  Identities=19%  Similarity=0.265  Sum_probs=143.6

Q ss_pred             EEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ecCCCceEEEEecCCCCCeEE
Q 020480          117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RGHSTEGYGLSWSKFKEGHLL  195 (325)
Q Consensus       117 ~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~  195 (325)
                      .+...-+|++.+..++|+|-.+.+||+|+.|..|++|+....       ........+ .+|+..|.+++|+|.++ +|+
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-------~s~~ck~vld~~hkrsVRsvAwsp~g~-~La   77 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-------DSWTCKTVLDDGHKRSVRSVAWSPHGR-YLA   77 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC-------CcEEEEEeccccchheeeeeeecCCCc-EEE
Confidence            344456799999999999972369999999999999998841       111111122 37999999999999999 999


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCC
Q 020480          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (325)
Q Consensus       196 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~  275 (325)
                      +||.|.++.||.-..+..    .++..+.+|.+.|-+++|+++| ++||+|+.|.+|-||.+........+..++.|...
T Consensus        78 ~aSFD~t~~Iw~k~~~ef----ecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD  152 (312)
T KOG0645|consen   78 SASFDATVVIWKKEDGEF----ECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD  152 (312)
T ss_pred             EeeccceEEEeecCCCce----eEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence            999999999998775544    6788999999999999999997 79999999999999999866655567788999999


Q ss_pred             eeEEEeCCCCC--ccCCCCceEEeeecc
Q 020480          276 VGVSILNASFR--LSHEDTCTCTHRHSR  301 (325)
Q Consensus       276 v~~i~~~p~~~--~~~~~d~~~~~~~~~  301 (325)
                      |..+.|+|..-  +++|+|.++++|.-.
T Consensus       153 VK~V~WHPt~dlL~S~SYDnTIk~~~~~  180 (312)
T KOG0645|consen  153 VKHVIWHPTEDLLFSCSYDNTIKVYRDE  180 (312)
T ss_pred             ccEEEEcCCcceeEEeccCCeEEEEeec
Confidence            99999999544  499999999998543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.90  E-value=3.4e-22  Score=178.17  Aligned_cols=182  Identities=19%  Similarity=0.208  Sum_probs=149.6

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      +..+|...+++++++|+| .++|+|+.||.|+|||...          .....++..|++.|+.+.|+..++ .+++++.
T Consensus       345 KQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~S----------gfC~vTFteHts~Vt~v~f~~~g~-~llssSL  412 (893)
T KOG0291|consen  345 KQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQS----------GFCFVTFTEHTSGVTAVQFTARGN-VLLSSSL  412 (893)
T ss_pred             eccccccceeeEEECCCC-cEEEeccCCCcEEEEeccC----------ceEEEEeccCCCceEEEEEEecCC-EEEEeec
Confidence            456899999999999999 7999999999999999987          334778999999999999999998 8999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecC-CccEEEEEeecCCCcEEEEEecCCc-EEEEEccCCCCCCCeeEeeccCCCee
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVH-EGVVEDVAWHLRHEYLFGSVGDDQY-LLIWDLRTPSVSKPVQSVVAHQSEVG  277 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~h~~~v~  277 (325)
                      ||+|+.||+...      ...++|... .....+++-.|.|. ++++|+.|.. |.+|++.+++.   +-.+.+|.+||.
T Consensus       413 DGtVRAwDlkRY------rNfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGql---lDiLsGHEgPVs  482 (893)
T KOG0291|consen  413 DGTVRAWDLKRY------RNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQL---LDILSGHEGPVS  482 (893)
T ss_pred             CCeEEeeeeccc------ceeeeecCCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCee---eehhcCCCCcce
Confidence            999999999876      346666543 34567888889884 6667776654 99999999994   888899999999


Q ss_pred             EEEeCCCCCc--cCCCCceEEeeeccee-----eeccCeeEEEeecCCCcccc
Q 020480          278 VSILNASFRL--SHEDTCTCTHRHSRYL-----LYKFPFFVLVFPLFPSLQHY  323 (325)
Q Consensus       278 ~i~~~p~~~~--~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  323 (325)
                      +++|+|.|..  +++.|.++|+|++-..     .-..+..++.+...|++...
T Consensus       483 ~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~el  535 (893)
T KOG0291|consen  483 GLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKEL  535 (893)
T ss_pred             eeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeE
Confidence            9999999985  9999999999986433     12344556666666776543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=2.7e-23  Score=187.52  Aligned_cols=167  Identities=19%  Similarity=0.258  Sum_probs=139.0

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCC---------------------------C-CC-----------
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPS---------------------------K-PP-----------  163 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~---------------------------~-~~-----------  163 (325)
                      +|.+.|.++.|+++| ++||+||.||.|+||.+...+.                           . ..           
T Consensus       265 ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             ccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            599999999999999 8999999999999998866100                           0 00           


Q ss_pred             -----------CCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEE
Q 020480          164 -----------LDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED  232 (325)
Q Consensus       164 -----------~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  232 (325)
                                 ..-..+|++.+.||++.|.+|.|+.++  +|++++.|.+|++|++...      .|+..|. |...|+|
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~------~CL~~F~-HndfVTc  414 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRK------ECLKVFS-HNDFVTC  414 (712)
T ss_pred             CCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCc------ceeeEEe-cCCeeEE
Confidence                       001234567778999999999999764  7999999999999999865      5777776 9999999


Q ss_pred             EEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeeccee
Q 020480          233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       233 v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~  303 (325)
                      |+|+|.+.++|++|+-||.||||++...+    +........-|++++|.|+|+.  .|+..|.|++++..-.
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~----Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l  483 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSISDKK----VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL  483 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecCcCe----eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence            99999888999999999999999998877    4444445688999999999994  8999999999876443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.90  E-value=2.9e-22  Score=181.76  Aligned_cols=223  Identities=22%  Similarity=0.282  Sum_probs=173.9

Q ss_pred             hHHHHhhhHhcChh--HHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCc
Q 020480           17 INEEYKIWKKNTPF--LYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEN   94 (325)
Q Consensus        17 ~~~~~~iw~~~~~~--~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~   94 (325)
                      -+..+++|+.....  +-..+..|...  +..++|+|++.          .++.++.     +..|.||++.        
T Consensus       179 ~~~~i~~~~~~~~~~~~~~~l~~h~~~--v~~~~fs~d~~----------~l~s~s~-----D~tiriwd~~--------  233 (456)
T KOG0266|consen  179 SDGLIRIWKLEGIKSNLLRELSGHTRG--VSDVAFSPDGS----------YLLSGSD-----DKTLRIWDLK--------  233 (456)
T ss_pred             CCCcEEEeecccccchhhccccccccc--eeeeEECCCCc----------EEEEecC-----CceEEEeecc--------
Confidence            45678888884444  44444566655  88999999984          4444443     3478888772        


Q ss_pred             ccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE
Q 020480           95 DARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL  174 (325)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  174 (325)
                                        .+........+|...|++++|+|++ +++++|+.|++|++||++.          .+....+
T Consensus       234 ------------------~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~----------~~~~~~l  284 (456)
T KOG0266|consen  234 ------------------DDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRT----------GECVRKL  284 (456)
T ss_pred             ------------------CCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccC----------CeEEEee
Confidence                              1112233345899999999999999 8999999999999999987          4668889


Q ss_pred             ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCcc--EEEEEeecCCCcEEEEEecCCcE
Q 020480          175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGV--VEDVAWHLRHEYLFGSVGDDQYL  252 (325)
Q Consensus       175 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--v~~v~~~p~~~~~l~s~~~dg~i  252 (325)
                      .+|.+.|++++|++++. +|++++.|+.|++||+.++...    +...+..+...  +++++|+|++ .++++++.|+.+
T Consensus       285 ~~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~  358 (456)
T KOG0266|consen  285 KGHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKL----CLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTL  358 (456)
T ss_pred             eccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCcee----eeecccCCCCCCceeEEEECCCC-cEEEEecCCCeE
Confidence            99999999999999999 8999999999999999988421    34455555544  9999999997 689999999999


Q ss_pred             EEEEccCCCCCCCeeEeeccCCCe---eEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          253 LIWDLRTPSVSKPVQSVVAHQSEV---GVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       253 ~iwd~~~~~~~~~~~~~~~h~~~v---~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      ++||++...+   +..+.+|...+   .+...++.+++  +++.|+.+.+|+...
T Consensus       359 ~~w~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s  410 (456)
T KOG0266|consen  359 KLWDLRSGKS---VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS  410 (456)
T ss_pred             EEEEccCCcc---eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence            9999999885   77777776643   34444666774  899999999998763

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.90  E-value=3.1e-22  Score=157.11  Aligned_cols=167  Identities=19%  Similarity=0.321  Sum_probs=140.9

Q ss_pred             EEEEeccC-CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEE
Q 020480          118 IIQQINHD-GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (325)
Q Consensus       118 ~~~~~~h~-~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  196 (325)
                      +.+.+.|+ +.|+++...|++ ..||+|+. ..|++||+++        ....|+.++.+|+..|+++.|..+|. +++|
T Consensus        32 C~rTiqh~dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S--------~np~Pv~t~e~h~kNVtaVgF~~dgr-WMyT  100 (311)
T KOG0315|consen   32 CSRTIQHPDSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNS--------NNPNPVATFEGHTKNVTAVGFQCDGR-WMYT  100 (311)
T ss_pred             EEEEEecCccceeeEEEcCCc-chhhhccC-CeeEEEEccC--------CCCCceeEEeccCCceEEEEEeecCe-EEEe
Confidence            44677775 789999999998 68888764 5899999998        55678999999999999999999999 9999


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC--------------
Q 020480          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV--------------  262 (325)
Q Consensus       197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--------------  262 (325)
                      |+.||+++|||+|..      .+.+.+ .|.++|+++..+|+. ..|++|..+|.|++||++...+              
T Consensus       101 gseDgt~kIWdlR~~------~~qR~~-~~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~s  172 (311)
T KOG0315|consen  101 GSEDGTVKIWDLRSL------SCQRNY-QHNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQS  172 (311)
T ss_pred             cCCCceEEEEeccCc------ccchhc-cCCCCcceEEecCCc-ceEEeecCCCcEEEEEccCCccccccCCCCCcceee
Confidence            999999999999984      334444 467999999999974 6888999999999999987421              


Q ss_pred             --------------------------------CCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeeccee
Q 020480          263 --------------------------------SKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       263 --------------------------------~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~  303 (325)
                                                      ..|+..+++|.+.+....++|++++  ++|.|.++++|....+
T Consensus       173 l~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  173 LTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             EEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence                                            2456677888999999999999996  8899999999987665

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=3.6e-22  Score=170.01  Aligned_cols=183  Identities=22%  Similarity=0.246  Sum_probs=152.2

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ..+|+.+|..+.|+|++...+++|+.|+.+++||+.+        ..  ....+.+|++.|.+.+|+|....+++||+.|
T Consensus       106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~--------a~--v~~~l~~htDYVR~g~~~~~~~hivvtGsYD  175 (487)
T KOG0310|consen  106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST--------AY--VQAELSGHTDYVRCGDISPANDHIVVTGSYD  175 (487)
T ss_pred             HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC--------cE--EEEEecCCcceeEeeccccCCCeEEEecCCC
Confidence            4469999999999999888999999999999999998        22  3557889999999999999988899999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      |.|++||++....     .+..+ .|..+|..+.+-|.| .+||+++ ...+++||+-++..  .+.....|...|+|++
T Consensus       176 g~vrl~DtR~~~~-----~v~el-nhg~pVe~vl~lpsg-s~iasAg-Gn~vkVWDl~~G~q--ll~~~~~H~KtVTcL~  245 (487)
T KOG0310|consen  176 GKVRLWDTRSLTS-----RVVEL-NHGCPVESVLALPSG-SLIASAG-GNSVKVWDLTTGGQ--LLTSMFNHNKTVTCLR  245 (487)
T ss_pred             ceEEEEEeccCCc-----eeEEe-cCCCceeeEEEcCCC-CEEEEcC-CCeEEEEEecCCce--ehhhhhcccceEEEEE
Confidence            9999999997631     23343 488999999999987 5787777 46799999997765  4555555999999999


Q ss_pred             eCCCCC--ccCCCCceEEeeecce----eeeccCeeEEEeecCCCcccc
Q 020480          281 LNASFR--LSHEDTCTCTHRHSRY----LLYKFPFFVLVFPLFPSLQHY  323 (325)
Q Consensus       281 ~~p~~~--~~~~~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  323 (325)
                      +..++.  +++|.|+.++++++..    ..|+||--.+.+.++|+-++.
T Consensus       246 l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~  294 (487)
T KOG0310|consen  246 LASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTV  294 (487)
T ss_pred             eecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceE
Confidence            998765  5999999999998543    357888877888888877664

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=2.7e-22  Score=156.28  Aligned_cols=178  Identities=18%  Similarity=0.189  Sum_probs=156.1

Q ss_pred             EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480          118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (325)
Q Consensus       118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  197 (325)
                      ....-.++++|.+++|+-+| ++.++|+.|.+|++|+...          ...++++.+|..+|.+++.+.++. .|++|
T Consensus        10 ~~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~r----------g~liktYsghG~EVlD~~~s~Dns-kf~s~   77 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLR----------GALIKTYSGHGHEVLDAALSSDNS-KFASC   77 (307)
T ss_pred             ceeecccccceEEEEEccCC-CEEEEcCCCceEEeecccc----------cceeeeecCCCceeeecccccccc-ccccC
Confidence            33345699999999999999 7999999999999999876          455888999999999999999988 89999


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG  277 (325)
Q Consensus       198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  277 (325)
                      +.|..|.+||+.++      +..+.+.+|.+.|+.++|+... .++++|+-|.++++||.|+.. .+|++.+......|.
T Consensus        78 GgDk~v~vwDV~TG------kv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s-~ePiQildea~D~V~  149 (307)
T KOG0316|consen   78 GGDKAVQVWDVNTG------KVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRS-FEPIQILDEAKDGVS  149 (307)
T ss_pred             CCCceEEEEEcccC------eeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCC-CCccchhhhhcCcee
Confidence            99999999999998      5688999999999999999875 799999999999999999877 468999988889999


Q ss_pred             EEEeCCCCCccCCCCceEEeeecceee-----eccCeeEEEee
Q 020480          278 VSILNASFRLSHEDTCTCTHRHSRYLL-----YKFPFFVLVFP  315 (325)
Q Consensus       278 ~i~~~p~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~  315 (325)
                      +|..+.+..+.|+-||+++.+++|.=.     -.-|+.+++|.
T Consensus       150 Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s  192 (307)
T KOG0316|consen  150 SIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFS  192 (307)
T ss_pred             EEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEec
Confidence            999999988899999999999987632     23566666654

>PTZ00420 coronin; Provisional

Probab=99.89  E-value=1.6e-21  Score=177.73  Aligned_cols=171  Identities=14%  Similarity=0.197  Sum_probs=132.7

Q ss_pred             EEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       119 ~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      ....+|.+.|.+++|+|...++||+|+.||.|++|++........  ....++..+.+|...|.+++|+|++..++++++
T Consensus        68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~--~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK--EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc--ccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence            345679999999999997557999999999999999975211000  011345678899999999999999886678999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeE
Q 020480          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGV  278 (325)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  278 (325)
                      .|+.|+|||++.+.      ....+. |...|.+++|+|+| .+|++++.|+.|+|||+|++..   +..+.+|.+.+.+
T Consensus       146 ~DgtIrIWDl~tg~------~~~~i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~---i~tl~gH~g~~~s  214 (568)
T PTZ00420        146 FDSFVNIWDIENEK------RAFQIN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEI---ASSFHIHDGGKNT  214 (568)
T ss_pred             CCCeEEEEECCCCc------EEEEEe-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcE---EEEEecccCCcee
Confidence            99999999999763      233443 55789999999997 6889999999999999999874   7788889876543


Q ss_pred             E-----EeCCCCCc--cCCCC----ceEEeeecce
Q 020480          279 S-----ILNASFRL--SHEDT----CTCTHRHSRY  302 (325)
Q Consensus       279 i-----~~~p~~~~--~~~~d----~~~~~~~~~~  302 (325)
                      .     .|++++.+  ++|.+    .++++|+++.
T Consensus       215 ~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        215 KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence            3     34566653  55555    3799999885

>PTZ00421 coronin; Provisional

Probab=99.89  E-value=5.7e-21  Score=173.13  Aligned_cols=212  Identities=17%  Similarity=0.235  Sum_probs=153.3

Q ss_pred             hhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCC
Q 020480           35 VITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANG  114 (325)
Q Consensus        35 ~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (325)
                      +..|..  ++++++|.|...         ..++.|+.     +..|++|++.-.  ...       .           ..
T Consensus        71 l~GH~~--~V~~v~fsP~d~---------~~LaSgS~-----DgtIkIWdi~~~--~~~-------~-----------~~  114 (493)
T PTZ00421         71 LLGQEG--PIIDVAFNPFDP---------QKLFTASE-----DGTIMGWGIPEE--GLT-------Q-----------NI  114 (493)
T ss_pred             EeCCCC--CEEEEEEcCCCC---------CEEEEEeC-----CCEEEEEecCCC--ccc-------c-----------cc
Confidence            444543  488999999432         24555543     347889877311  000       0           00


Q ss_pred             ceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeE
Q 020480          115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL  194 (325)
Q Consensus       115 ~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  194 (325)
                      .-.+....+|...|.+++|+|.+.++|++|+.|+.|+|||+..          ...+..+.+|...|.+++|+|++. +|
T Consensus       115 ~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t----------g~~~~~l~~h~~~V~sla~spdG~-lL  183 (493)
T PTZ00421        115 SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER----------GKAVEVIKCHSDQITSLEWNLDGS-LL  183 (493)
T ss_pred             CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC----------CeEEEEEcCCCCceEEEEEECCCC-EE
Confidence            0112234679999999999998767999999999999999987          344667889999999999999998 89


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceEeeecCCcc-EEEEEeecCCCcEEEEEe----cCCcEEEEEccCCCCCCCeeEe
Q 020480          195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGV-VEDVAWHLRHEYLFGSVG----DDQYLLIWDLRTPSVSKPVQSV  269 (325)
Q Consensus       195 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~v~~~p~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~  269 (325)
                      ++++.|+.|++||++++      ..+..+.+|... +..+.|.+++. .+++++    .|+.|++||++....  ++...
T Consensus       184 atgs~Dg~IrIwD~rsg------~~v~tl~~H~~~~~~~~~w~~~~~-~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~  254 (493)
T PTZ00421        184 CTTSKDKKLNIIDPRDG------TIVSSVEAHASAKSQRCLWAKRKD-LIITLGCSKSQQRQIMLWDTRKMAS--PYSTV  254 (493)
T ss_pred             EEecCCCEEEEEECCCC------cEEEEEecCCCCcceEEEEcCCCC-eEEEEecCCCCCCeEEEEeCCCCCC--ceeEe
Confidence            99999999999999986      346677778754 45678888764 454443    589999999998664  45544


Q ss_pred             ecc-CCCeeEEEeCCCCCc--cCC-CCceEEeeecce
Q 020480          270 VAH-QSEVGVSILNASFRL--SHE-DTCTCTHRHSRY  302 (325)
Q Consensus       270 ~~h-~~~v~~i~~~p~~~~--~~~-~d~~~~~~~~~~  302 (325)
                      ..+ ...+....|++++.+  +++ .|+.+++|+++.
T Consensus       255 ~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        255 DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence            333 345666778998874  454 699999998764

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.89  E-value=1.9e-23  Score=177.53  Aligned_cols=169  Identities=20%  Similarity=0.259  Sum_probs=147.4

Q ss_pred             CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCe
Q 020480          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (325)
Q Consensus       114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  193 (325)
                      |+-......+|+..|+++.|.|...++|++|+.|+.|+||++..         ....++++.+|..+|.+++|+.++. .
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~---------~~~~lrtf~gH~k~Vrd~~~s~~g~-~  272 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD---------DRRCLRTFKGHRKPVRDASFNNCGT-S  272 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec---------CcceehhhhcchhhhhhhhccccCC-e
Confidence            33334445679999999999995448999999999999999975         2355888999999999999999999 7


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC
Q 020480          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ  273 (325)
Q Consensus       194 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~  273 (325)
                      |+|++.|+.|++||++++      .++..+. ....++++.|+|+++++|++|+.|+.|+.||+|+++.   ++.+..|-
T Consensus       273 fLS~sfD~~lKlwDtETG------~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv---vqeYd~hL  342 (503)
T KOG0282|consen  273 FLSASFDRFLKLWDTETG------QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV---VQEYDRHL  342 (503)
T ss_pred             eeeeecceeeeeeccccc------eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH---HHHHHhhh
Confidence            999999999999999998      4555554 3456889999999989999999999999999999995   89999999


Q ss_pred             CCeeEEEeCCCCC--ccCCCCceEEeeecce
Q 020480          274 SEVGVSILNASFR--LSHEDTCTCTHRHSRY  302 (325)
Q Consensus       274 ~~v~~i~~~p~~~--~~~~~d~~~~~~~~~~  302 (325)
                      +.|..|.|-++|+  ++.++|+++++|+.++
T Consensus       343 g~i~~i~F~~~g~rFissSDdks~riWe~~~  373 (503)
T KOG0282|consen  343 GAILDITFVDEGRRFISSSDDKSVRIWENRI  373 (503)
T ss_pred             hheeeeEEccCCceEeeeccCccEEEEEcCC
Confidence            9999999999998  4899999999998765

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.89  E-value=1.1e-22  Score=180.90  Aligned_cols=168  Identities=16%  Similarity=0.188  Sum_probs=146.1

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE----EEecCCCceEEEEecCCCCCeEE
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL----RLRGHSTEGYGLSWSKFKEGHLL  195 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~----~~~~h~~~v~~l~~~p~~~~~l~  195 (325)
                      +-.+|...|.+++++.-+..+|++++.|+++++|++......     ...+..    +...|...|.+++.+|+.. +++
T Consensus       406 ~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~-----~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiA  479 (775)
T KOG0319|consen  406 QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKET-----AFPIVLTCRYTERAHDKDINCVAIAPNDK-LIA  479 (775)
T ss_pred             hhcccccccceeeecccCccEEEEecCCceEEEecCCCcccc-----cccceehhhHHHHhhcccccceEecCCCc-eEE
Confidence            456799999999999888899999999999999999861111     011122    3357999999999999998 999


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCC
Q 020480          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (325)
Q Consensus       196 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~  275 (325)
                      |||.|.+.+||++...      .....+.+|+..|+++.|+|.+ .++||+|.|++|+||.+.+..+   +.++.+|.+.
T Consensus       480 T~SqDktaKiW~le~~------~l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fSC---lkT~eGH~~a  549 (775)
T KOG0319|consen  480 TGSQDKTAKIWDLEQL------RLLGVLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFSC---LKTFEGHTSA  549 (775)
T ss_pred             ecccccceeeecccCc------eEEEEeeCCccceEEEEecccc-ceeEeccCCceEEEEEecccee---eeeecCccce
Confidence            9999999999999955      5688999999999999999986 6999999999999999999997   9999999999


Q ss_pred             eeEEEeCCCCC--ccCCCCceEEeeeccee
Q 020480          276 VGVSILNASFR--LSHEDTCTCTHRHSRYL  303 (325)
Q Consensus       276 v~~i~~~p~~~--~~~~~d~~~~~~~~~~~  303 (325)
                      |..+.|-.+|+  ++++.||.+++|++..-
T Consensus       550 Vlra~F~~~~~qliS~~adGliKlWnikt~  579 (775)
T KOG0319|consen  550 VLRASFIRNGKQLISAGADGLIKLWNIKTN  579 (775)
T ss_pred             eEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence            99999998887  49999999999987553

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=8.3e-22  Score=178.50  Aligned_cols=230  Identities=16%  Similarity=0.221  Sum_probs=186.6

Q ss_pred             hhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCc
Q 020480           15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEN   94 (325)
Q Consensus        15 ~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~   94 (325)
                      +.-+..|++|+-+-..|.+-+..|..+  +.-++|.|..+          .++     +++.+..|++|+..        
T Consensus        27 slHsG~IQlWDYRM~tli~rFdeHdGp--VRgv~FH~~qp----------lFV-----SGGDDykIkVWnYk--------   81 (1202)
T KOG0292|consen   27 SLHSGVIQLWDYRMGTLIDRFDEHDGP--VRGVDFHPTQP----------LFV-----SGGDDYKIKVWNYK--------   81 (1202)
T ss_pred             eecCceeeeehhhhhhHHhhhhccCCc--cceeeecCCCC----------eEE-----ecCCccEEEEEecc--------
Confidence            344567899999999999999888755  99999999875          222     33445688899773        


Q ss_pred             ccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE
Q 020480           95 DARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL  174 (325)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  174 (325)
                                         .+--+....+|-..|..+.|++.-+ .|++++.|.+|+||+..+          .+.+..+
T Consensus        82 -------------------~rrclftL~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqs----------r~~iavl  131 (1202)
T KOG0292|consen   82 -------------------TRRCLFTLLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQS----------RKCIAVL  131 (1202)
T ss_pred             -------------------cceehhhhccccceeEEeeccCCCc-eEEEccCCCeEEEEeccC----------CceEEEE
Confidence                               1223345678999999999999874 899999999999999987          4568889


Q ss_pred             ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCC-----------------------cccceEeeecCCccEE
Q 020480          175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK-----------------------SLEAMQIFKVHEGVVE  231 (325)
Q Consensus       175 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~-----------------------~~~~~~~~~~~~~~v~  231 (325)
                      .||...|.+..|+|... +++|+|.|.+|||||+...++..                       .....+.+.+|...|+
T Consensus       132 tGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVN  210 (1202)
T KOG0292|consen  132 TGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVN  210 (1202)
T ss_pred             ecCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccc
Confidence            99999999999999888 89999999999999986543210                       0112345689999999


Q ss_pred             EEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--ccCCCCceEEeeecce
Q 020480          232 DVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--LSHEDTCTCTHRHSRY  302 (325)
Q Consensus       232 ~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~~~~~d~~~~~~~~~~  302 (325)
                      -++|+|.-+ +|+||++|..|++|.+...+.+ .+-+..+|...|.++-|+|+..  ++.|.|+++++||+..
T Consensus       211 waAfhpTlp-liVSG~DDRqVKlWrmnetKaW-EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k  281 (1202)
T KOG0292|consen  211 WAAFHPTLP-LIVSGADDRQVKLWRMNETKAW-EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK  281 (1202)
T ss_pred             eEEecCCcc-eEEecCCcceeeEEEeccccce-eehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence            999999875 9999999999999999876643 4556689999999999999655  4999999999998743

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=3.8e-21  Score=168.36  Aligned_cols=196  Identities=19%  Similarity=0.266  Sum_probs=165.5

Q ss_pred             ceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEec
Q 020480           44 SLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQIN  123 (325)
Q Consensus        44 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (325)
                      +=++++.|..+          -++.+-..+     .+.||+.+                            ....++.+.
T Consensus        16 VKsVd~HPteP----------w~la~LynG-----~V~IWnye----------------------------tqtmVksfe   52 (794)
T KOG0276|consen   16 VKSVDFHPTEP----------WILAALYNG-----DVQIWNYE----------------------------TQTMVKSFE   52 (794)
T ss_pred             eeeeecCCCCc----------eEEEeeecC-----eeEEEecc----------------------------cceeeeeee
Confidence            56889999764          344555433     57777663                            122333343


Q ss_pred             -cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          124 -HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       124 -h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                       ..-+|.+..|-+.. +.+++|+.|..|+||++.+          ...+..+..|.+.|.+++.+|..+ +++|+|.|-.
T Consensus        53 V~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt----------~ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~  120 (794)
T KOG0276|consen   53 VSEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNT----------GEKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMT  120 (794)
T ss_pred             ecccchhhheeeecc-ceEEEecCCceEEEEeccc----------ceeeEEeeccccceeeeeecCCCC-eEEecCCccE
Confidence             45688888998876 7999999999999999988          566889999999999999999999 8999999999


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeC
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN  282 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~  282 (325)
                      |++||-+..-     .+.++|.+|+..|.+++|+|.+.+.|||++-|++|+||.+.+..   +..++.+|...|+||.|-
T Consensus       121 iKlW~we~~w-----a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~---~nfTl~gHekGVN~Vdyy  192 (794)
T KOG0276|consen  121 IKLWDWENEW-----ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH---PNFTLEGHEKGVNCVDYY  192 (794)
T ss_pred             EEEeeccCce-----eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC---CceeeeccccCcceEEec
Confidence            9999998652     57889999999999999999999999999999999999999887   588999999999999999


Q ss_pred             CCCC----ccCCCCceEEeeecce
Q 020480          283 ASFR----LSHEDTCTCTHRHSRY  302 (325)
Q Consensus       283 p~~~----~~~~~d~~~~~~~~~~  302 (325)
                      +-|.    ++|++|.++++||...
T Consensus       193 ~~gdkpylIsgaDD~tiKvWDyQt  216 (794)
T KOG0276|consen  193 TGGDKPYLISGADDLTIKVWDYQT  216 (794)
T ss_pred             cCCCcceEEecCCCceEEEeecch
Confidence            8773    4999999999998744

>PTZ00420 coronin; Provisional

Probab=99.88  E-value=1.3e-20  Score=171.93  Aligned_cols=228  Identities=11%  Similarity=0.134  Sum_probs=153.9

Q ss_pred             HHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccC
Q 020480           18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDAR   97 (325)
Q Consensus        18 ~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~   97 (325)
                      ...+++|+.........+..|..  ++++++|.|+..         ..++.|+.     +..|.+|++.-.  ....   
T Consensus        53 ~gvI~L~~~~r~~~v~~L~gH~~--~V~~lafsP~~~---------~lLASgS~-----DgtIrIWDi~t~--~~~~---  111 (568)
T PTZ00420         53 IGAIRLENQMRKPPVIKLKGHTS--SILDLQFNPCFS---------EILASGSE-----DLTIRVWEIPHN--DESV---  111 (568)
T ss_pred             eeEEEeeecCCCceEEEEcCCCC--CEEEEEEcCCCC---------CEEEEEeC-----CCeEEEEECCCC--Cccc---
Confidence            34567776544333334555553  599999999742         24555543     347889876311  0000   


Q ss_pred             CCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC
Q 020480           98 HYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH  177 (325)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h  177 (325)
                          .  .+     ..   ......+|...|.+++|+|.+..++++|+.|+.|++||++.          ......+. |
T Consensus       112 ----~--~i-----~~---p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t----------g~~~~~i~-~  166 (568)
T PTZ00420        112 ----K--EI-----KD---PQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIEN----------EKRAFQIN-M  166 (568)
T ss_pred             ----c--cc-----cc---ceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCC----------CcEEEEEe-c
Confidence                0  00     01   11224579999999999999866778999999999999987          22344454 5


Q ss_pred             CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEE-----EeecCCCcEEEEEecCC--
Q 020480          178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV-----AWHLRHEYLFGSVGDDQ--  250 (325)
Q Consensus       178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v-----~~~p~~~~~l~s~~~dg--  250 (325)
                      ...|.+++|+|+|. +|++++.|+.|+|||++++      ..+..+.+|.+.+...     .|++++ .++++++.|+  
T Consensus       167 ~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg------~~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~  238 (568)
T PTZ00420        167 PKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQ------EIASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNN  238 (568)
T ss_pred             CCcEEEEEECCCCC-EEEEEecCCEEEEEECCCC------cEEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCC
Confidence            67899999999998 8999999999999999987      4567788888765433     345765 5777777664  


Q ss_pred             --cEEEEEccCCCCCCCeeEee--ccCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          251 --YLLIWDLRTPSVSKPVQSVV--AHQSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       251 --~i~iwd~~~~~~~~~~~~~~--~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                        .|+|||++....  ++....  .+.+.+...-..++|.+  +|+.|+++++|++.
T Consensus       239 ~R~VkLWDlr~~~~--pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~  293 (568)
T PTZ00420        239 MREMKLWDLKNTTS--ALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS  293 (568)
T ss_pred             ccEEEEEECCCCCC--ceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence              799999997543  455543  23333333334555764  78899999999874

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.1e-21  Score=175.54  Aligned_cols=165  Identities=18%  Similarity=0.272  Sum_probs=141.7

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ...|...|+++.|++..+++|++|+.||.|++||++.          .....++.+....|.++.|+|...+.|+++...
T Consensus       129 f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~----------~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds  198 (839)
T KOG0269|consen  129 FNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS----------KKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS  198 (839)
T ss_pred             hhhhccceeeeeeccCCccEEEecCCCceEEEEeeec----------ccccccccccchhhhceeeccCCCceEEEecCC
Confidence            4579999999999999999999999999999999997          344556777888999999999988899999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      |.+++||+|...     .+...+.+|.+.|.++.|+|++ .+|||||.|+.|+|||+.+.+. .++.++. ...+|.+|+
T Consensus       199 G~lqlWDlRqp~-----r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVk  270 (839)
T KOG0269|consen  199 GYLQLWDLRQPD-----RCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVK  270 (839)
T ss_pred             ceEEEeeccCch-----hHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeee
Confidence            999999999875     3677789999999999999965 7999999999999999987663 3556654 367999999


Q ss_pred             eCCCCCc-----cCCCCceEEeeeccee
Q 020480          281 LNASFRL-----SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       281 ~~p~~~~-----~~~~d~~~~~~~~~~~  303 (325)
                      |-|....     +-..|..+.+||++.-
T Consensus       271 WRP~~~~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  271 WRPARSYHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             eccCccchhhhhhccccceEEEEeeccc
Confidence            9998763     3456889999998764

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.87  E-value=4.3e-21  Score=158.82  Aligned_cols=167  Identities=20%  Similarity=0.412  Sum_probs=136.9

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ..+|+..|..++|+|.....||+|+.||.|+|||++.        +..++....+.|.+-|..|.|+...+ +|++|+.|
T Consensus       253 f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs--------~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~Dd  323 (440)
T KOG0302|consen  253 FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS--------GPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDD  323 (440)
T ss_pred             ccccccchhhhccCCccCceEEeeecCceEEEEEecC--------CCccceeEeeccCCceeeEEccCCcc-eeeecCCC
Confidence            4569999999999998888999999999999999998        43444555589999999999999988 99999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC-------------CCCee
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-------------SKPVQ  267 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-------------~~~~~  267 (325)
                      |+++|||+|.-+..   .++..|+-|..+|+++.|+|.....|++++.|..|.+||+....-             .-|-+
T Consensus       324 Gt~~iwDLR~~~~~---~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQ  400 (440)
T KOG0302|consen  324 GTLSIWDLRQFKSG---QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQ  400 (440)
T ss_pred             ceEEEEEhhhccCC---CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCce
Confidence            99999999987655   678899999999999999998889999999999999999975321             01223


Q ss_pred             Eeecc--CCCeeEEEeCCCCC---ccCCCCceEEeee
Q 020480          268 SVVAH--QSEVGVSILNASFR---LSHEDTCTCTHRH  299 (325)
Q Consensus       268 ~~~~h--~~~v~~i~~~p~~~---~~~~~d~~~~~~~  299 (325)
                      .+.-|  ...+..+.|+++-.   ++.+.||.+.+..
T Consensus       401 LLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfkt  437 (440)
T KOG0302|consen  401 LLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFKT  437 (440)
T ss_pred             eEEEecchhHhhhheeccCCCCeEEEecccceeEEEe
Confidence            33445  34688899998643   3677777666543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.87  E-value=1.3e-21  Score=158.28  Aligned_cols=165  Identities=21%  Similarity=0.311  Sum_probs=134.0

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ..+.|..+|+++.|.|.. .+|++|+.|++|++||+...        ..+..++.-....+|.++.|+|.|. +++.|..
T Consensus       167 TlYDH~devn~l~FHPre-~ILiS~srD~tvKlFDfsK~--------saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTd  236 (430)
T KOG0640|consen  167 TLYDHVDEVNDLDFHPRE-TILISGSRDNTVKLFDFSKT--------SAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTD  236 (430)
T ss_pred             ehhhccCcccceeecchh-heEEeccCCCeEEEEecccH--------HHHHHHHHhhccceeeeEeecCCCc-eEEEecC
Confidence            467899999999999987 79999999999999999872        1222222223456899999999999 8999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-eccC-CCee
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQ-SEVG  277 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~-~~v~  277 (325)
                      ..++++||+.+.+.-   .+...-..|+..|+++.+++.+ ++.++|+.||.|++||--+.+|   +.++ .+|. +.|.
T Consensus       237 Hp~~rlYdv~T~Qcf---vsanPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rC---v~t~~~AH~gsevc  309 (430)
T KOG0640|consen  237 HPTLRLYDVNTYQCF---VSANPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRC---VRTIGNAHGGSEVC  309 (430)
T ss_pred             CCceeEEeccceeEe---eecCcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHH---HHHHHhhcCCceee
Confidence            999999999986310   0111235689999999999997 6999999999999999999886   6666 4564 5799


Q ss_pred             EEEeCCCCCc--cCCCCceEEeeecc
Q 020480          278 VSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       278 ~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      +..|..+|++  +.|.|.++++|.+.
T Consensus       310 Sa~Ftkn~kyiLsSG~DS~vkLWEi~  335 (430)
T KOG0640|consen  310 SAVFTKNGKYILSSGKDSTVKLWEIS  335 (430)
T ss_pred             eEEEccCCeEEeecCCcceeeeeeec
Confidence            9999999995  88899999999863

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.87  E-value=3.5e-21  Score=171.77  Aligned_cols=229  Identities=17%  Similarity=0.230  Sum_probs=181.7

Q ss_pred             HHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccC
Q 020480           18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDAR   97 (325)
Q Consensus        18 ~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~   97 (325)
                      +.++.+++.....+.+..-.|...  .++++..|++.+          ++.|+     .++.+.+|++.+-.. ....  
T Consensus       433 ~Gel~vfdlaS~~l~Eti~AHdga--IWsi~~~pD~~g----------~vT~s-----aDktVkfWdf~l~~~-~~gt--  492 (888)
T KOG0306|consen  433 NGELQVFDLASASLVETIRAHDGA--IWSISLSPDNKG----------FVTGS-----ADKTVKFWDFKLVVS-VPGT--  492 (888)
T ss_pred             CCceEEEEeehhhhhhhhhccccc--eeeeeecCCCCc----------eEEec-----CCcEEEEEeEEEEec-cCcc--
Confidence            345555555555566666655444  777888887753          34443     345788888864311 0000  


Q ss_pred             CCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC
Q 020480           98 HYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH  177 (325)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h  177 (325)
                                  ....-+++..+.+.-+..|.|+++||++ .+||++--|.+|+||-+.+          .+...++.||
T Consensus       493 ------------~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDt----------lKFflsLYGH  549 (888)
T KOG0306|consen  493 ------------QKKVLSLKHTRTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDT----------LKFFLSLYGH  549 (888)
T ss_pred             ------------cceeeeeccceEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEecc----------eeeeeeeccc
Confidence                        0001233444566778999999999999 7999999999999999987          5656788999


Q ss_pred             CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEc
Q 020480          178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL  257 (325)
Q Consensus       178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~  257 (325)
                      .-+|.+++.+|++. +++|||.|..|++|-++-+      .|-..+-+|...|.++.|.|.. ..+.+||.|+.|+-||-
T Consensus       550 kLPV~smDIS~DSk-livTgSADKnVKiWGLdFG------DCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg  621 (888)
T KOG0306|consen  550 KLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFG------DCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDG  621 (888)
T ss_pred             ccceeEEeccCCcC-eEEeccCCCceEEeccccc------hhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeech
Confidence            99999999999999 9999999999999999988      6778889999999999999975 78889999999999999


Q ss_pred             cCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480          258 RTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       258 ~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                      .....   ++.+.+|...|+|++.+|+|.+  ++|.|.++++|..
T Consensus       622 ~kFe~---iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~  663 (888)
T KOG0306|consen  622 EKFEE---IQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER  663 (888)
T ss_pred             hhhhh---heeeccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence            88874   9999999999999999999985  8999999999964

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.87  E-value=1.3e-20  Score=182.85  Aligned_cols=225  Identities=14%  Similarity=0.177  Sum_probs=168.1

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.++++|+.........+..|..  ++++++|.|...         ..++.|+.     +..+.+|++.-         
T Consensus       553 ~Dg~v~lWd~~~~~~~~~~~~H~~--~V~~l~~~p~~~---------~~L~Sgs~-----Dg~v~iWd~~~---------  607 (793)
T PLN00181        553 FEGVVQVWDVARSQLVTEMKEHEK--RVWSIDYSSADP---------TLLASGSD-----DGSVKLWSINQ---------  607 (793)
T ss_pred             CCCeEEEEECCCCeEEEEecCCCC--CEEEEEEcCCCC---------CEEEEEcC-----CCEEEEEECCC---------
Confidence            477899999887655555555654  489999997432         24555543     34788887631         


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG  176 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  176 (325)
                                       +.  ....+.+...|.++.|++.+..+|++|+.||.|++||++.        . ..++..+.+
T Consensus       608 -----------------~~--~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~--------~-~~~~~~~~~  659 (793)
T PLN00181        608 -----------------GV--SIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRN--------P-KLPLCTMIG  659 (793)
T ss_pred             -----------------Cc--EEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCC--------C-CccceEecC
Confidence                             11  1223345568999999765448999999999999999976        1 224567789


Q ss_pred             CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEE
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD  256 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd  256 (325)
                      |...|.++.|. ++. .+++++.|++|++||++.........++..+.+|...+.+++|+|++ .+||+|+.|+.|++|+
T Consensus       660 h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~  736 (793)
T PLN00181        660 HSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYH  736 (793)
T ss_pred             CCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEE
Confidence            99999999997 455 79999999999999998643221224577889999999999999987 6999999999999999


Q ss_pred             ccCCCCCCCeeE-------------eeccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480          257 LRTPSVSKPVQS-------------VVAHQSEVGVSILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       257 ~~~~~~~~~~~~-------------~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                      ......   +..             ...|...|.+++|+|++..  +++.++.+++|++
T Consensus       737 ~~~~~~---~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        737 KAFPMP---VLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCCCc---eEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            875531   211             1234567999999999874  8889999999975

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=3.3e-21  Score=174.66  Aligned_cols=164  Identities=20%  Similarity=0.274  Sum_probs=142.9

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      +.-+|.|+|..++|+|+. .+|++|+.|-.|+||++..          .+.+.++.||-+.|..+.|++.-+ +++|+|.
T Consensus        46 rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~----------rrclftL~GHlDYVRt~~FHheyP-WIlSASD  113 (1202)
T KOG0292|consen   46 RFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKT----------RRCLFTLLGHLDYVRTVFFHHEYP-WILSASD  113 (1202)
T ss_pred             hhhccCCccceeeecCCC-CeEEecCCccEEEEEeccc----------ceehhhhccccceeEEeeccCCCc-eEEEccC
Confidence            345799999999999998 5999999999999999987          456889999999999999999999 9999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC--CC------------
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS--KP------------  265 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~--~~------------  265 (325)
                      |.+|+||+..+.      .++..+.+|+..|.|.+|+|.. .+++|+|-|.+|||||+..-+..  .|            
T Consensus       114 DQTIrIWNwqsr------~~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~  186 (1202)
T KOG0292|consen  114 DQTIRIWNWQSR------KCIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQG  186 (1202)
T ss_pred             CCeEEEEeccCC------ceEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhcccc
Confidence            999999999987      6799999999999999999975 59999999999999998642210  00            


Q ss_pred             ------------eeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          266 ------------VQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       266 ------------~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                                  -+.+.+|...|+-++|+|.-.+  +|++|..+++|...-
T Consensus       187 ~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne  237 (1202)
T KOG0292|consen  187 NSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE  237 (1202)
T ss_pred             chhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc
Confidence                        1345789999999999998775  999999999996543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1.6e-20  Score=157.03  Aligned_cols=172  Identities=14%  Similarity=0.213  Sum_probs=127.5

Q ss_pred             ceEEEE-EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCC
Q 020480          115 KVQIIQ-QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEG  192 (325)
Q Consensus       115 ~~~~~~-~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~  192 (325)
                      .+++.+ ..+|..+|..+.|+|+. +++++|+.+-.+.+||+.+        +..  ...+. +|...+.+.+|.|++. 
T Consensus       258 ~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~t--------gd~--~~~y~~~~~~S~~sc~W~pDg~-  325 (519)
T KOG0293|consen  258 HFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDT--------GDL--RHLYPSGLGFSVSSCAWCPDGF-  325 (519)
T ss_pred             ceeeeeeeecccCceEEEEECCCC-CeEEecCchHheeeccCCc--------chh--hhhcccCcCCCcceeEEccCCc-
Confidence            355443 45799999999999998 6888888888999999987        322  22222 3557899999999999 


Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCC----c---c------------------------------------------------
Q 020480          193 HLLSGSDDAQICLWDINAAPKNK----S---L------------------------------------------------  217 (325)
Q Consensus       193 ~l~s~s~dg~i~iwd~~~~~~~~----~---~------------------------------------------------  217 (325)
                      .+++|+.|+.+..||+.......    .   +                                                
T Consensus       326 ~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~  405 (519)
T KOG0293|consen  326 RFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISK  405 (519)
T ss_pred             eeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcC
Confidence            79999999999999987542110    0   0                                                


Q ss_pred             ----------------------cceEeeecCCc--cEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC
Q 020480          218 ----------------------EAMQIFKVHEG--VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ  273 (325)
Q Consensus       218 ----------------------~~~~~~~~~~~--~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~  273 (325)
                                            ..++.+.+|+.  .+..-||--.+..++|+|+.|+.|+||+.++++   ++..+.+|.
T Consensus       406 d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk---ll~~LsGHs  482 (519)
T KOG0293|consen  406 DGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK---LLAVLSGHS  482 (519)
T ss_pred             CCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc---eeEeecCCc
Confidence                                  00111222222  122223333234689999999999999999998   699999999


Q ss_pred             CCeeEEEeCCCCC---ccCCCCceEEeeecc
Q 020480          274 SEVGVSILNASFR---LSHEDTCTCTHRHSR  301 (325)
Q Consensus       274 ~~v~~i~~~p~~~---~~~~~d~~~~~~~~~  301 (325)
                      ..|++|+|+|...   .++|+|+++|+|...
T Consensus       483 ~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  483 KTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             ceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence            9999999999766   299999999999764

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.87  E-value=2.4e-20  Score=149.57  Aligned_cols=228  Identities=18%  Similarity=0.302  Sum_probs=171.6

Q ss_pred             hhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCC
Q 020480           35 VITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANG  114 (325)
Q Consensus        35 ~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (325)
                      +..++.+||..+++|+.....       ..++++|+... .-.|.+.|.++...                        .+
T Consensus        38 iy~Y~ap~~lya~~Ws~~~~~-------~~rla~gS~~E-e~~Nkvqiv~ld~~------------------------s~   85 (364)
T KOG0290|consen   38 IYTYNAPWPLYAMNWSVRPDK-------KFRLAVGSFIE-EYNNKVQIVQLDED------------------------SG   85 (364)
T ss_pred             EEEecCCCceeeeccccCCCc-------ceeEEEeeecc-ccCCeeEEEEEccC------------------------CC
Confidence            446678999999999965332       26789999854 45688888887511                        11


Q ss_pred             ceEEEEEeccCCCeeEEEecCCC----CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE-----EEecCCCceEEEE
Q 020480          115 KVQIIQQINHDGEVNRARYMPQN----PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-----RLRGHSTEGYGLS  185 (325)
Q Consensus       115 ~~~~~~~~~h~~~v~~v~~~~~~----~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~~l~  185 (325)
                      .+.....+.|..+++.+.|.|+.    +.+||+.+  -.+++|.+......      ..+..     +-..+..+++++.
T Consensus        86 e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~------~~~~~~L~~~kns~~~aPlTSFD  157 (364)
T KOG0290|consen   86 ELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESR------VELQSVLNNNKNSEFCAPLTSFD  157 (364)
T ss_pred             ceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCc------eehhhhhccCcccccCCcccccc
Confidence            22222337899999999999975    45777743  47999998742111      11111     1224667999999


Q ss_pred             ecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC---
Q 020480          186 WSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV---  262 (325)
Q Consensus       186 ~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~---  262 (325)
                      |+.-.++++.++|-|.++.|||+..+...   .....+-+|...|..++|...+..+||++|.||++|+||+|..+.   
T Consensus       158 Wne~dp~~igtSSiDTTCTiWdie~~~~~---~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI  234 (364)
T KOG0290|consen  158 WNEVDPNLIGTSSIDTTCTIWDIETGVSG---TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI  234 (364)
T ss_pred             cccCCcceeEeecccCeEEEEEEeecccc---ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE
Confidence            99998889999999999999999986221   235567889999999999997778999999999999999997321   


Q ss_pred             ------------------------------------------CCCeeEeeccCCCeeEEEeCCCCC---ccCCCCceEEe
Q 020480          263 ------------------------------------------SKPVQSVVAHQSEVGVSILNASFR---LSHEDTCTCTH  297 (325)
Q Consensus       263 ------------------------------------------~~~~~~~~~h~~~v~~i~~~p~~~---~~~~~d~~~~~  297 (325)
                                                                ..++..+.+|++.|+.|+|.|+..   .++|+|..+-+
T Consensus       235 IYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qali  314 (364)
T KOG0290|consen  235 IYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALI  314 (364)
T ss_pred             EecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEE
Confidence                                                      135666788999999999999876   39999999999


Q ss_pred             eecceeee
Q 020480          298 RHSRYLLY  305 (325)
Q Consensus       298 ~~~~~~~~  305 (325)
                      |++.....
T Consensus       315 WDl~q~~~  322 (364)
T KOG0290|consen  315 WDLQQMPR  322 (364)
T ss_pred             Eecccccc
Confidence            99876543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.87  E-value=1.2e-21  Score=160.73  Aligned_cols=156  Identities=19%  Similarity=0.275  Sum_probs=137.2

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ...+|++.|.|+.|..   ..+++|+.|.+|++||+.+          .+++.++-+|...|..+.|+.   ++++|++.
T Consensus       232 ~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~t----------ge~l~tlihHceaVLhlrf~n---g~mvtcSk  295 (499)
T KOG0281|consen  232 ILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNT----------GEPLNTLIHHCEAVLHLRFSN---GYMVTCSK  295 (499)
T ss_pred             hhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccC----------CchhhHHhhhcceeEEEEEeC---CEEEEecC
Confidence            3568999999999986   5899999999999999998          567888899999999999973   38999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS  279 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i  279 (325)
                      |.++.+||+....   .+.+.+.+.+|...|+.+.|+.   .++++++.|.+|++|++.+.++   +.++.+|+..|-|+
T Consensus       296 DrsiaVWdm~sps---~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~ef---vRtl~gHkRGIACl  366 (499)
T KOG0281|consen  296 DRSIAVWDMASPT---DITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEF---VRTLNGHKRGIACL  366 (499)
T ss_pred             CceeEEEeccCch---HHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceee---ehhhhcccccceeh
Confidence            9999999998764   2356677889999999999973   5999999999999999999996   89999999999998


Q ss_pred             EeCCCCCccCCCCceEEeeec
Q 020480          280 ILNASFRLSHEDTCTCTHRHS  300 (325)
Q Consensus       280 ~~~p~~~~~~~~d~~~~~~~~  300 (325)
                      .+...-.++|+.|.++++|++
T Consensus       367 QYr~rlvVSGSSDntIRlwdi  387 (499)
T KOG0281|consen  367 QYRDRLVVSGSSDNTIRLWDI  387 (499)
T ss_pred             hccCeEEEecCCCceEEEEec
Confidence            887554459999999999986

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.87  E-value=5.7e-20  Score=178.32  Aligned_cols=162  Identities=19%  Similarity=0.261  Sum_probs=133.8

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      +.+...|.+++|++....+||+|+.||.|++||+..          ...+..+.+|.+.|++++|+|....+|++|+.||
T Consensus       529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~----------~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg  598 (793)
T PLN00181        529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR----------SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG  598 (793)
T ss_pred             ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC----------CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCC
Confidence            345678999999986557999999999999999986          3446678899999999999984444899999999


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEe
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL  281 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~  281 (325)
                      .|++||++.+      .++..+..+ ..+.++.|++....+|++|+.||.|++||++....  ++..+.+|...|.++.|
T Consensus       599 ~v~iWd~~~~------~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~--~~~~~~~h~~~V~~v~f  669 (793)
T PLN00181        599 SVKLWSINQG------VSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL--PLCTMIGHSKTVSYVRF  669 (793)
T ss_pred             EEEEEECCCC------cEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc--cceEecCCCCCEEEEEE
Confidence            9999999876      345555544 57899999765457999999999999999997653  46777899999999999


Q ss_pred             CCCCCc-cCCCCceEEeeecce
Q 020480          282 NASFRL-SHEDTCTCTHRHSRY  302 (325)
Q Consensus       282 ~p~~~~-~~~~d~~~~~~~~~~  302 (325)
                      .+...+ +++.|+++++|+++.
T Consensus       670 ~~~~~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        670 VDSSTLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             eCCCEEEEEECCCEEEEEeCCC
Confidence            854444 889999999999863

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.86  E-value=5.2e-21  Score=150.42  Aligned_cols=216  Identities=17%  Similarity=0.192  Sum_probs=165.2

Q ss_pred             HHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccC
Q 020480           18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDAR   97 (325)
Q Consensus        18 ~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~   97 (325)
                      |=+-|+|+.-++   +.++.+....-+.+|+|..+..          .++.|.+..     -+.|++++-|         
T Consensus        80 dftakvw~a~tg---delhsf~hkhivk~~af~~ds~----------~lltgg~ek-----llrvfdln~p---------  132 (334)
T KOG0278|consen   80 DFTAKVWDAVTG---DELHSFEHKHIVKAVAFSQDSN----------YLLTGGQEK-----LLRVFDLNRP---------  132 (334)
T ss_pred             cchhhhhhhhhh---hhhhhhhhhheeeeEEecccch----------hhhccchHH-----HhhhhhccCC---------
Confidence            446789987665   3445544445578999999874          566666532     3445555433         


Q ss_pred             CCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC
Q 020480           98 HYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH  177 (325)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h  177 (325)
                                       +-......+|++.|..+.|+... +.|++.+.|++|++||.++          ...+.++. .
T Consensus       133 -----------------~App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rT----------gt~v~sL~-~  183 (334)
T KOG0278|consen  133 -----------------KAPPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRT----------GTEVQSLE-F  183 (334)
T ss_pred             -----------------CCCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEecc----------CcEEEEEe-c
Confidence                             22222346899999999999977 6777779999999999998          33355554 4


Q ss_pred             CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEc
Q 020480          178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL  257 (325)
Q Consensus       178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~  257 (325)
                      ..+|+++..+++|.  +++-...+.|..||...-.      .+..+. -...|.+.+.+|+. .++++|+.|..++.||.
T Consensus       184 ~s~VtSlEvs~dG~--ilTia~gssV~Fwdaksf~------~lKs~k-~P~nV~SASL~P~k-~~fVaGged~~~~kfDy  253 (334)
T KOG0278|consen  184 NSPVTSLEVSQDGR--ILTIAYGSSVKFWDAKSFG------LLKSYK-MPCNVESASLHPKK-EFFVAGGEDFKVYKFDY  253 (334)
T ss_pred             CCCCcceeeccCCC--EEEEecCceeEEecccccc------ceeecc-CccccccccccCCC-ceEEecCcceEEEEEec
Confidence            56899999999987  6666777899999998763      344443 34568899999986 79999999999999999


Q ss_pred             cCCCCCCCeeEe-eccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          258 RTPSVSKPVQSV-VAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       258 ~~~~~~~~~~~~-~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      .++..   +..+ ++|.++|.||.|+|+|.+  +|+.||++++|+...
T Consensus       254 ~TgeE---i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  254 NTGEE---IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             cCCce---eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence            99985   6664 899999999999999996  999999999998643

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.86  E-value=2.7e-22  Score=163.13  Aligned_cols=169  Identities=20%  Similarity=0.260  Sum_probs=142.3

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      .++..+.+.|..|+|+| +++++|+.||.|.+|++.+.....  +-+....-.+--+..+|.+++|+.+.. .+++|+.|
T Consensus       209 KFg~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrK--DLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqD  284 (508)
T KOG0275|consen  209 KFGQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRK--DLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQD  284 (508)
T ss_pred             ecccccchhheeeCCCC-ceEeeccccceeeeehhccchhhh--hhhhhhhcceeecccceEEEeecccHH-HhhccCcC
Confidence            45677889999999999 799999999999999997721100  001111223344778999999999998 99999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeee-cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS  279 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i  279 (325)
                      |.|++|.++++      .|++.|. +|+..|++++|+.++ ..+++++-|.++|+.-+.++++   +..+.+|.+-|+..
T Consensus       285 GkIKvWri~tG------~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~---LKEfrGHsSyvn~a  354 (508)
T KOG0275|consen  285 GKIKVWRIETG------QCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKC---LKEFRGHSSYVNEA  354 (508)
T ss_pred             CcEEEEEEecc------hHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchh---HHHhcCccccccce
Confidence            99999999998      6788876 899999999999998 4677999999999999999995   89999999999999


Q ss_pred             EeCCCCC--ccCCCCceEEeeeccee
Q 020480          280 ILNASFR--LSHEDTCTCTHRHSRYL  303 (325)
Q Consensus       280 ~~~p~~~--~~~~~d~~~~~~~~~~~  303 (325)
                      .|.++|.  ++++.|+++++|+....
T Consensus       355 ~ft~dG~~iisaSsDgtvkvW~~Ktt  380 (508)
T KOG0275|consen  355 TFTDDGHHIISASSDGTVKVWHGKTT  380 (508)
T ss_pred             EEcCCCCeEEEecCCccEEEecCcch
Confidence            9999997  49999999999987553

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.86  E-value=1.6e-21  Score=165.97  Aligned_cols=223  Identities=14%  Similarity=0.153  Sum_probs=177.4

Q ss_pred             hHHHHhhhHhcC-hhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcc
Q 020480           17 INEEYKIWKKNT-PFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEND   95 (325)
Q Consensus        17 ~~~~~~iw~~~~-~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~   95 (325)
                      -|-.++||+... +.+...+..|+.+  +.++.|++.+.          +++.+++..     +|++|+..         
T Consensus       235 mD~~vklW~vy~~~~~lrtf~gH~k~--Vrd~~~s~~g~----------~fLS~sfD~-----~lKlwDtE---------  288 (503)
T KOG0282|consen  235 MDGLVKLWNVYDDRRCLRTFKGHRKP--VRDASFNNCGT----------SFLSASFDR-----FLKLWDTE---------  288 (503)
T ss_pred             CCceEEEEEEecCcceehhhhcchhh--hhhhhccccCC----------eeeeeecce-----eeeeeccc---------
Confidence            456789999877 8888888888865  88999999875          455555533     56666553         


Q ss_pred             cCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe
Q 020480           96 ARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR  175 (325)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  175 (325)
                                       .++..  ..+.....++|+.|.|++++.|++|+.|+.|+.||++.          .+.+..+.
T Consensus       289 -----------------TG~~~--~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs----------~kvvqeYd  339 (503)
T KOG0282|consen  289 -----------------TGQVL--SRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS----------GKVVQEYD  339 (503)
T ss_pred             -----------------cceEE--EEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccc----------hHHHHHHH
Confidence                             34433  45666778999999999989999999999999999998          44577788


Q ss_pred             cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCC----------------------------------------
Q 020480          176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK----------------------------------------  215 (325)
Q Consensus       176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~----------------------------------------  215 (325)
                      .|-+.|..+.|-+.+. .+++.+.|++++||+.+.+-..+                                        
T Consensus       340 ~hLg~i~~i~F~~~g~-rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~  418 (503)
T KOG0282|consen  340 RHLGAILDITFVDEGR-RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF  418 (503)
T ss_pred             hhhhheeeeEEccCCc-eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence            8999999999999999 89999999999999987652110                                        


Q ss_pred             cccceEeeecCC--ccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC---ccCC
Q 020480          216 SLEAMQIFKVHE--GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR---LSHE  290 (325)
Q Consensus       216 ~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~---~~~~  290 (325)
                      .+.....|.+|.  +.-..+.|+|+| .+|++|..||.+.+||.++.+.   +..+++|..++..+.|+|...   ++++
T Consensus       419 r~nkkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt~kl---~~~lkah~~~ci~v~wHP~e~Skvat~~  494 (503)
T KOG0282|consen  419 RLNKKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKTTKL---VSKLKAHDQPCIGVDWHPVEPSKVATCG  494 (503)
T ss_pred             ccCHhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechhhhh---hhccccCCcceEEEEecCCCcceeEecc
Confidence            001122344554  345668899998 6999999999999999999884   888899999999999999654   4899


Q ss_pred             CCceEEeee
Q 020480          291 DTCTCTHRH  299 (325)
Q Consensus       291 ~d~~~~~~~  299 (325)
                      .+|.+++|+
T Consensus       495 w~G~Ikiwd  503 (503)
T KOG0282|consen  495 WDGLIKIWD  503 (503)
T ss_pred             cCceeEecC
Confidence            999999985

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=4.6e-21  Score=168.67  Aligned_cols=220  Identities=21%  Similarity=0.302  Sum_probs=165.0

Q ss_pred             HHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCC
Q 020480           19 EEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARH   98 (325)
Q Consensus        19 ~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~   98 (325)
                      ..+.+|.......-..+..+  .-.+.++.|.+++.          .+++|+..+     .+.||+..-.          
T Consensus       197 ~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~----------~LavG~~~g-----~v~iwD~~~~----------  249 (484)
T KOG0305|consen  197 QSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGS----------HLAVGTSDG-----TVQIWDVKEQ----------  249 (484)
T ss_pred             ceEEEEecCCCceEEeEecC--CCceEEEEECCCCC----------EEEEeecCC-----eEEEEehhhc----------
Confidence            34455655555444333333  33467888888774          577777644     6777766311          


Q ss_pred             CCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC
Q 020480           99 YDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS  178 (325)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~  178 (325)
                                      +........|...|.+++|+.   ..+.+|+.+|.|..+|++..        ... ..++.+|.
T Consensus       250 ----------------k~~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~--------~~~-~~~~~~H~  301 (484)
T KOG0305|consen  250 ----------------KKTRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRIS--------QHV-VSTLQGHR  301 (484)
T ss_pred             ----------------cccccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecc--------hhh-hhhhhccc
Confidence                            111111223899999999994   58999999999999999872        121 22478999


Q ss_pred             CceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe--cCCcEEEEE
Q 020480          179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG--DDQYLLIWD  256 (325)
Q Consensus       179 ~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~--~dg~i~iwd  256 (325)
                      ..|+.+.|++++. ++++|+.|+.+.|||....      .+...+..|...|.+++|+|-...+||+|+  .|++|++||
T Consensus       302 qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~------~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn  374 (484)
T KOG0305|consen  302 QEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSP------EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN  374 (484)
T ss_pred             ceeeeeEECCCCC-eeccCCCccceEeccCCCc------cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence            9999999999999 8999999999999999554      567788999999999999998889999987  799999999


Q ss_pred             ccCCCCC----------------------------------------CCeeEeeccCCCeeEEEeCCCCCc--cCCCCce
Q 020480          257 LRTPSVS----------------------------------------KPVQSVVAHQSEVGVSILNASFRL--SHEDTCT  294 (325)
Q Consensus       257 ~~~~~~~----------------------------------------~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~  294 (325)
                      ..++...                                        +++..+.+|...|..++++|+|..  +++.|.+
T Consensus       375 ~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DET  454 (484)
T KOG0305|consen  375 TNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADET  454 (484)
T ss_pred             cCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCc
Confidence            9875421                                        234455678888889999998874  8888889


Q ss_pred             EEeeec
Q 020480          295 CTHRHS  300 (325)
Q Consensus       295 ~~~~~~  300 (325)
                      +++|++
T Consensus       455 lrfw~~  460 (484)
T KOG0305|consen  455 LRFWNL  460 (484)
T ss_pred             EEeccc
Confidence            998875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.86  E-value=7.1e-20  Score=155.37  Aligned_cols=216  Identities=23%  Similarity=0.339  Sum_probs=164.6

Q ss_pred             HHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccC
Q 020480           18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDAR   97 (325)
Q Consensus        18 ~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~   97 (325)
                      +..+++|+.+.......+..+..  ++.++.|.|+..          .++.+.     .++.+.++++.           
T Consensus        72 ~~~i~i~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~----------~~~~~~-----~~~~i~~~~~~-----------  123 (289)
T cd00200          72 DKTIRLWDLETGECVRTLTGHTS--YVSSVAFSPDGR----------ILSSSS-----RDKTIKVWDVE-----------  123 (289)
T ss_pred             CCeEEEEEcCcccceEEEeccCC--cEEEEEEcCCCC----------EEEEec-----CCCeEEEEECC-----------
Confidence            67788888877543333333332  477888888632          233333     23467777653           


Q ss_pred             CCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC
Q 020480           98 HYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH  177 (325)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h  177 (325)
                                     ..+. ......|...|.++.|+|++ .++++++.+|.|++||++.          ......+..|
T Consensus       124 ---------------~~~~-~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~----------~~~~~~~~~~  176 (289)
T cd00200         124 ---------------TGKC-LTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRT----------GKCVATLTGH  176 (289)
T ss_pred             ---------------CcEE-EEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccc----------cccceeEecC
Confidence                           1111 11223688899999999986 6888888799999999986          3446667788


Q ss_pred             CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEc
Q 020480          178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL  257 (325)
Q Consensus       178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~  257 (325)
                      ...+.++.|+|++. .+++++.++.|++||++.+      ..+..+..|...+.+++|+|++ .++++++.||.|++||+
T Consensus       177 ~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~  248 (289)
T cd00200         177 TGEVNSVAFSPDGE-KLLSSSSDGTIKLWDLSTG------KCLGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDL  248 (289)
T ss_pred             ccccceEEECCCcC-EEEEecCCCcEEEEECCCC------ceecchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEc
Confidence            88999999999997 7888888999999999875      3455666788899999999985 68888888999999999


Q ss_pred             cCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeee
Q 020480          258 RTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRH  299 (325)
Q Consensus       258 ~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~  299 (325)
                      ++..   ++..+..|...|.+++|+|++.+  +++.|+.+++|+
T Consensus       249 ~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         249 RTGE---CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCce---eEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            9876   47777789999999999998764  888999999885

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.86  E-value=6e-21  Score=154.39  Aligned_cols=180  Identities=16%  Similarity=0.211  Sum_probs=143.5

Q ss_pred             CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC--------CCCCCCCcEEEecCCCceEEEE
Q 020480          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP--------LDGACSPDLRLRGHSTEGYGLS  185 (325)
Q Consensus       114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~--------~~~~~~~~~~~~~h~~~v~~l~  185 (325)
                      +..+....-.|++++.+.+|+++| .++|+|+.|..|+|+|++....+..        .......++++..|..+|.++.
T Consensus       101 ~~yEt~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~  179 (430)
T KOG0640|consen  101 SEYETKYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD  179 (430)
T ss_pred             cccceEEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee
Confidence            355666667899999999999999 7999999999999999974322211        1122345678889999999999


Q ss_pred             ecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCC
Q 020480          186 WSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP  265 (325)
Q Consensus       186 ~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  265 (325)
                      |+|... .|++|+.|++|++||+....-.+.   ...+. ....|.+++|+|.| .+++.|..-.++++||+.+.++..+
T Consensus       180 FHPre~-ILiS~srD~tvKlFDfsK~saKrA---~K~~q-d~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qcfvs  253 (430)
T KOG0640|consen  180 FHPRET-ILISGSRDNTVKLFDFSKTSAKRA---FKVFQ-DTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVS  253 (430)
T ss_pred             ecchhh-eEEeccCCCeEEEEecccHHHHHH---HHHhh-ccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeee
Confidence            999988 999999999999999976532111   11222 34579999999998 5888999999999999999886322


Q ss_pred             eeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480          266 VQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       266 ~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                      ..--..|++.|+++.+++.|++  +++.||.+++||.
T Consensus       254 anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDG  290 (430)
T KOG0640|consen  254 ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDG  290 (430)
T ss_pred             cCcccccccceeEEEecCCccEEEEeccCCcEEeecc
Confidence            2333679999999999999996  9999999999985

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=2.2e-21  Score=173.49  Aligned_cols=175  Identities=19%  Similarity=0.228  Sum_probs=146.5

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~i  205 (325)
                      ..+..|.|..-..++||+++..|.|.+||+...       .+.+.+..+..|+..+++++|++..+++|++|+.||.|++
T Consensus        88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~-------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~  160 (839)
T KOG0269|consen   88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKS-------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKC  160 (839)
T ss_pred             eehhhcccccchhhhheeecCCCcEEEEecCcc-------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEE
Confidence            356678888655689999999999999999862       1233445678999999999999999999999999999999


Q ss_pred             EeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCC
Q 020480          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASF  285 (325)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~  285 (325)
                      ||++...      ...++.+....|.+|.|+|..++.|+++.+.|.+++||+|....  +...+.+|.++|.|+.|+|++
T Consensus       161 ~DlR~~~------S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r--~~~k~~AH~GpV~c~nwhPnr  232 (839)
T KOG0269|consen  161 WDLRSKK------SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR--CEKKLTAHNGPVLCLNWHPNR  232 (839)
T ss_pred             Eeeeccc------ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh--HHHHhhcccCceEEEeecCCC
Confidence            9999874      35567778889999999998789999999999999999998875  677889999999999999988


Q ss_pred             Cc--cCCCCceEEeeecce--------eeeccCeeEEEee
Q 020480          286 RL--SHEDTCTCTHRHSRY--------LLYKFPFFVLVFP  315 (325)
Q Consensus       286 ~~--~~~~d~~~~~~~~~~--------~~~~~~~~~~~~~  315 (325)
                      .+  +||.|+++++|+...        +...+|+..+.+.
T Consensus       233 ~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWR  272 (839)
T KOG0269|consen  233 EWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWR  272 (839)
T ss_pred             ceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeec
Confidence            75  899999999998752        2344555555543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=5.8e-19  Score=137.12  Aligned_cols=185  Identities=19%  Similarity=0.261  Sum_probs=141.2

Q ss_pred             CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCC-------CC-----------------------
Q 020480          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSK-------PP-----------------------  163 (325)
Q Consensus       114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~-------~~-----------------------  163 (325)
                      |.+.+.+...|.+.|.|.+|+|.| .++|+|++|..|++..++.....       ..                       
T Consensus        78 p~v~~kr~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~  156 (350)
T KOG0641|consen   78 PSVLCKRNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILA  156 (350)
T ss_pred             CeEEeeeccccCccEEEEEecCcc-CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEE
Confidence            355666666789999999999999 79999999999998765431100       00                       


Q ss_pred             ------------CCCCCCCcEEEecCCCceEEE-EecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeec-----
Q 020480          164 ------------LDGACSPDLRLRGHSTEGYGL-SWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV-----  225 (325)
Q Consensus       164 ------------~~~~~~~~~~~~~h~~~v~~l-~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-----  225 (325)
                                  .-++..+...+.+|++.|.++ .|+  +. ++++|+.|.+|+.||++..      .++.++..     
T Consensus       157 s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn--~~-m~~sgsqdktirfwdlrv~------~~v~~l~~~~~~~  227 (350)
T KOG0641|consen  157 SAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN--GA-MFASGSQDKTIRFWDLRVN------SCVNTLDNDFHDG  227 (350)
T ss_pred             ecCCCcceEEEeecCCCCcceeecCCcccEEEEEEec--Cc-EEEccCCCceEEEEeeecc------ceeeeccCcccCC
Confidence                        012334456677888888877 454  45 8999999999999999976      33443321     


Q ss_pred             --CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--ccCCCCceEEeeecc
Q 020480          226 --HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--LSHEDTCTCTHRHSR  301 (325)
Q Consensus       226 --~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~~~~~d~~~~~~~~~  301 (325)
                        .++.|.+++..|.| ++|++|-.|.+.-+||+|.++   +++.+..|...|.|+.|+|...  +++++|..+++-++.
T Consensus       228 glessavaav~vdpsg-rll~sg~~dssc~lydirg~r---~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  228 GLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGR---MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             CcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCc---eeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence              23679999999997 799999999999999999998   6999999999999999999765  499999999997664


Q ss_pred             ee-eeccCeeEE
Q 020480          302 YL-LYKFPFFVL  312 (325)
Q Consensus       302 ~~-~~~~~~~~~  312 (325)
                      -- ...+|++.+
T Consensus       304 gdla~el~~~vv  315 (350)
T KOG0641|consen  304 GDLAHELPIMVV  315 (350)
T ss_pred             cchhhcCceEEE
Confidence            32 234554443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.85  E-value=1e-18  Score=148.22  Aligned_cols=203  Identities=19%  Similarity=0.250  Sum_probs=161.1

Q ss_pred             HhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCC
Q 020480           34 LVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCAN  113 (325)
Q Consensus        34 ~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (325)
                      .+..|.  -++.+++|.|+..          .+++++.     ++.+.++++.-.                         
T Consensus         4 ~~~~h~--~~i~~~~~~~~~~----------~l~~~~~-----~g~i~i~~~~~~-------------------------   41 (289)
T cd00200           4 TLKGHT--GGVTCVAFSPDGK----------LLATGSG-----DGTIKVWDLETG-------------------------   41 (289)
T ss_pred             HhcccC--CCEEEEEEcCCCC----------EEEEeec-----CcEEEEEEeeCC-------------------------
Confidence            344454  4588999999853          4555553     457888877411                         


Q ss_pred             CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCe
Q 020480          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (325)
Q Consensus       114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  193 (325)
                       . .......|...+..+.|+|++ +.+++++.+|.|++|++..          ......+..|...+.++.|++++. +
T Consensus        42 -~-~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~-~  107 (289)
T cd00200          42 -E-LLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLET----------GECVRTLTGHTSYVSSVAFSPDGR-I  107 (289)
T ss_pred             -C-cEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCc----------ccceEEEeccCCcEEEEEEcCCCC-E
Confidence             1 122345688889999999988 6899999999999999986          244667788998999999999966 7


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC
Q 020480          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ  273 (325)
Q Consensus       194 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~  273 (325)
                      +++++.+|.|++||++..      .....+..|...+.+++|+|++ .++++++.|+.|++||++..+   ++..+..|.
T Consensus       108 ~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~---~~~~~~~~~  177 (289)
T cd00200         108 LSSSSRDKTIKVWDVETG------KCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGK---CVATLTGHT  177 (289)
T ss_pred             EEEecCCCeEEEEECCCc------EEEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccc---cceeEecCc
Confidence            888888999999999865      3466677888899999999985 688787789999999999777   377777888


Q ss_pred             CCeeEEEeCCCCC--ccCCCCceEEeeecce
Q 020480          274 SEVGVSILNASFR--LSHEDTCTCTHRHSRY  302 (325)
Q Consensus       274 ~~v~~i~~~p~~~--~~~~~d~~~~~~~~~~  302 (325)
                      ..+.+++|+|++.  ++++.++.+++|+.+.
T Consensus       178 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~  208 (289)
T cd00200         178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLST  208 (289)
T ss_pred             cccceEEECCCcCEEEEecCCCcEEEEECCC
Confidence            8999999999985  3677799999998763

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.85  E-value=2.1e-19  Score=144.82  Aligned_cols=249  Identities=15%  Similarity=0.173  Sum_probs=181.3

Q ss_pred             HHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCC-------CCCCeEEEEEEECCCCCCCcccCCCCcccCC
Q 020480           33 DLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE-------NEPNYLMLAQVQLPLDDSENDARHYDDDRSD  105 (325)
Q Consensus        33 ~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~  105 (325)
                      ..+..|+..  ++++.|.|++...+...+..+.+++......       ++.+.++=+++.  ..... -.+  ...+-.
T Consensus        41 m~l~gh~ge--I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~--~d~s~-i~S--~gtDk~  113 (338)
T KOG0265|consen   41 MLLPGHKGE--IYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGM--RDGSH-ILS--CGTDKT  113 (338)
T ss_pred             hhcCCCcce--EEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeec--cCCCE-EEE--ecCCce
Confidence            345566655  8999999999887788888788887765321       222233323222  10000 011  122235


Q ss_pred             CCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEE
Q 020480          106 FGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLS  185 (325)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  185 (325)
                      +.+|+...++.. .+...|.+.|+.+.-+..|+.++.+|+.||++++||.+.          ...+.++ ....+++++.
T Consensus       114 v~~wD~~tG~~~-rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~----------k~~~~t~-~~kyqltAv~  181 (338)
T KOG0265|consen  114 VRGWDAETGKRI-RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK----------KEAIKTF-ENKYQLTAVG  181 (338)
T ss_pred             EEEEecccceee-ehhccccceeeecCccccCCeEEEecCCCceEEEEeecc----------cchhhcc-ccceeEEEEE
Confidence            667777777643 345679999999997777888999999999999999997          2334333 2356799999


Q ss_pred             ecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCC
Q 020480          186 WSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP  265 (325)
Q Consensus       186 ~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  265 (325)
                      |...+. .+.+|+-|+.|++||++..      .....+.+|...|+.+..+|.| .++.+-+.|.++++||+|-....+.
T Consensus       182 f~d~s~-qv~sggIdn~ikvWd~r~~------d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R  253 (338)
T KOG0265|consen  182 FKDTSD-QVISGGIDNDIKVWDLRKN------DGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQR  253 (338)
T ss_pred             eccccc-ceeeccccCceeeeccccC------cceEEeecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCc
Confidence            999988 7999999999999999877      5688899999999999999998 5888999999999999996543323


Q ss_pred             -eeEeeccC----CCeeEEEeCCCCCc--cCCCCceEEeeecce--eeeccC
Q 020480          266 -VQSVVAHQ----SEVGVSILNASFRL--SHEDTCTCTHRHSRY--LLYKFP  308 (325)
Q Consensus       266 -~~~~~~h~----~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~--~~~~~~  308 (325)
                       +..+.+|.    .-....+|+|++..  .++.|..+.+|+...  +.|+.|
T Consensus       254 ~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp  305 (338)
T KOG0265|consen  254 CVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP  305 (338)
T ss_pred             eEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC
Confidence             56665543    23456789999885  788999999998654  455544

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.85  E-value=1.6e-19  Score=155.34  Aligned_cols=164  Identities=20%  Similarity=0.291  Sum_probs=140.7

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ..+|...|+++.|-|..+..+++|++|+.|.+|.=.-          .+...++..|...|.++.|+|+|. +++|++.|
T Consensus       143 i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP----------FKFk~s~r~HskFV~~VRysPDG~-~Fat~gsD  211 (603)
T KOG0318|consen  143 ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP----------FKFKSSFREHSKFVNCVRYSPDGS-RFATAGSD  211 (603)
T ss_pred             eeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC----------eeeeecccccccceeeEEECCCCC-eEEEecCC
Confidence            3469999999999999999999999999999997543          344556778999999999999999 89999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeee---cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC---------------
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFK---VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV---------------  262 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~---~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~---------------  262 (325)
                      |.+.+||-.++.+      +..+.   +|.+.|.+++|+|++ ..|++++.|.+++|||+.+.+.               
T Consensus       212 gki~iyDGktge~------vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqv  284 (603)
T KOG0318|consen  212 GKIYIYDGKTGEK------VGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQV  284 (603)
T ss_pred             ccEEEEcCCCccE------EEEecCCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCchhceEE
Confidence            9999999998854      44444   899999999999997 6889999999999999987432               


Q ss_pred             -------------------------CCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          263 -------------------------SKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       263 -------------------------~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                                               ..++..+.+|...|+++..+|++..  ++++||.+.-|+...
T Consensus       285 G~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~  351 (603)
T KOG0318|consen  285 GCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS  351 (603)
T ss_pred             EEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCC
Confidence                                     1345666789999999999999984  999999999998644

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=3.7e-20  Score=144.46  Aligned_cols=218  Identities=17%  Similarity=0.143  Sum_probs=174.1

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.++|+|+.-...|...+..|..+  ++.++-+-+...          +     ++.+.+..+.+|+++          
T Consensus        37 sdrtvrLWNp~rg~liktYsghG~E--VlD~~~s~Dnsk----------f-----~s~GgDk~v~vwDV~----------   89 (307)
T KOG0316|consen   37 SDRTVRLWNPLRGALIKTYSGHGHE--VLDAALSSDNSK----------F-----ASCGGDKAVQVWDVN----------   89 (307)
T ss_pred             CCceEEeecccccceeeeecCCCce--eeeccccccccc----------c-----ccCCCCceEEEEEcc----------
Confidence            5678999999999888888888877  777776666542          2     455566788888874          


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG  176 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  176 (325)
                                      .++. ..+..+|.+.|+.++|+.+. ..+++|+.|..+++||.+.        ...+|++.+..
T Consensus        90 ----------------TGkv-~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS--------~s~ePiQilde  143 (307)
T KOG0316|consen   90 ----------------TGKV-DRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRS--------RSFEPIQILDE  143 (307)
T ss_pred             ----------------cCee-eeecccccceeeEEEecCcc-eEEEeccccceeEEEEccc--------CCCCccchhhh
Confidence                            2332 23456799999999999987 7999999999999999998        67788999988


Q ss_pred             CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEE
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD  256 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd  256 (325)
                      ..+.|.++..+..   .+++|+.||+++.||++.+..      ..  .-...+|++++|++++ +..+.++-|+++++.|
T Consensus       144 a~D~V~Si~v~~h---eIvaGS~DGtvRtydiR~G~l------~s--Dy~g~pit~vs~s~d~-nc~La~~l~stlrLlD  211 (307)
T KOG0316|consen  144 AKDGVSSIDVAEH---EIVAGSVDGTVRTYDIRKGTL------SS--DYFGHPITSVSFSKDG-NCSLASSLDSTLRLLD  211 (307)
T ss_pred             hcCceeEEEeccc---EEEeeccCCcEEEEEeeccee------eh--hhcCCcceeEEecCCC-CEEEEeeccceeeecc
Confidence            8899999998743   799999999999999998843      22  2234579999999997 6888999999999999


Q ss_pred             ccCCCCCCCeeEeeccCCCeeEEE--eCCCCC--ccCCCCceEEeeecce
Q 020480          257 LRTPSVSKPVQSVVAHQSEVGVSI--LNASFR--LSHEDTCTCTHRHSRY  302 (325)
Q Consensus       257 ~~~~~~~~~~~~~~~h~~~v~~i~--~~p~~~--~~~~~d~~~~~~~~~~  302 (325)
                      -.+++   .+..+++|...-..+.  ++....  ++|+.||.+.+|++..
T Consensus       212 k~tGk---lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd  258 (307)
T KOG0316|consen  212 KETGK---LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD  258 (307)
T ss_pred             cchhH---HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence            99998   4888999987654443  443333  4999999999998743

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.84  E-value=2.7e-19  Score=153.95  Aligned_cols=173  Identities=18%  Similarity=0.193  Sum_probs=141.7

Q ss_pred             CCceEEEEEe-ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe---cCCCceEEEEecC
Q 020480          113 NGKVQIIQQI-NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR---GHSTEGYGLSWSK  188 (325)
Q Consensus       113 ~~~~~~~~~~-~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p  188 (325)
                      -|++++.... .|..-|+|++|+|+| .+||+++.||+|.+||=.+          ...+..+.   +|++.|.+++|+|
T Consensus       177 GPPFKFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGkt----------ge~vg~l~~~~aHkGsIfalsWsP  245 (603)
T KOG0318|consen  177 GPPFKFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKT----------GEKVGELEDSDAHKGSIFALSWSP  245 (603)
T ss_pred             CCCeeeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCC----------ccEEEEecCCCCccccEEEEEECC
Confidence            4566665555 488999999999998 7999999999999999776          34456665   8999999999999


Q ss_pred             CCCCeEEEEeCCCcEEEEeCCCCCCC-------------------------------------CcccceEeeecCCccEE
Q 020480          189 FKEGHLLSGSDDAQICLWDINAAPKN-------------------------------------KSLEAMQIFKVHEGVVE  231 (325)
Q Consensus       189 ~~~~~l~s~s~dg~i~iwd~~~~~~~-------------------------------------~~~~~~~~~~~~~~~v~  231 (325)
                      ++. .++|++.|.+++|||+.+....                                     ....++..+.+|...|+
T Consensus       246 Ds~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~IT  324 (603)
T KOG0318|consen  246 DST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSIT  324 (603)
T ss_pred             CCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccccee
Confidence            999 8999999999999998776311                                     01124567789999999


Q ss_pred             EEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc-cCCCCceEEeeec
Q 020480          232 DVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL-SHEDTCTCTHRHS  300 (325)
Q Consensus       232 ~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~  300 (325)
                      ++..+|++ .+|.+|+.||.|.-||..++...  -..-..|...|.+++-+..+.+ +.+.|.+++.-++
T Consensus       325 aLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~--~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~  391 (603)
T KOG0318|consen  325 ALTVSPDG-KTIYSGSYDGHINSWDSGSGTSD--RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISL  391 (603)
T ss_pred             EEEEcCCC-CEEEeeccCceEEEEecCCcccc--ccccccccceEEEEeecCCCcEEEEecCCeEEEEec
Confidence            99999998 68899999999999999988751  1111679999999999986665 8889999988654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.84  E-value=2e-20  Score=160.54  Aligned_cols=154  Identities=17%  Similarity=0.220  Sum_probs=118.8

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE--EecCCCceEEEEecCCCCCeEEEEe
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR--LRGHSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      ..+|...++|.+|+|.....|++++.||++++|++.....      ..+.+..  ..+..-.++.++|+|++. ++|+|.
T Consensus       264 TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~------q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc  336 (641)
T KOG0772|consen  264 TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS------QLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGC  336 (641)
T ss_pred             cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh------heeEEeeccCCCcccCceeeecCCCcc-hhhhcc
Confidence            4468899999999999888999999999999999986211      1111111  113345789999999999 799999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceEeeecCCc--cEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC--C
Q 020480          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEG--VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ--S  274 (325)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~--~  274 (325)
                      .||+|.+|+.+.....   .....-.+|..  .|++|.|+++| ++|++-+.|+++++||+|..+.  ++.+..+..  -
T Consensus       337 ~DGSIQ~W~~~~~~v~---p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kk--pL~~~tgL~t~~  410 (641)
T KOG0772|consen  337 LDGSIQIWDKGSRTVR---PVMKVKDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKK--PLNVRTGLPTPF  410 (641)
T ss_pred             cCCceeeeecCCcccc---cceEeeeccCCCCceeEEEecccc-chhhhccCCCceeeeecccccc--chhhhcCCCccC
Confidence            9999999998654322   12333467776  89999999998 7999999999999999999876  666654433  3


Q ss_pred             CeeEEEeCCCCCc
Q 020480          275 EVGVSILNASFRL  287 (325)
Q Consensus       275 ~v~~i~~~p~~~~  287 (325)
                      +-+.++|+|+.++
T Consensus       411 ~~tdc~FSPd~kl  423 (641)
T KOG0772|consen  411 PGTDCCFSPDDKL  423 (641)
T ss_pred             CCCccccCCCceE
Confidence            4577899999885

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=3.5e-21  Score=171.04  Aligned_cols=162  Identities=20%  Similarity=0.297  Sum_probs=148.3

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ..+|.++|.++.|++.. .+|++|+.+|+|++||+..          .+.++++.+|...+.+++|+|-+. ++++|+.|
T Consensus        66 ~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDlee----------Ak~vrtLtgh~~~~~sv~f~P~~~-~~a~gStd  133 (825)
T KOG0267|consen   66 LTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEE----------AKIVRTLTGHLLNITSVDFHPYGE-FFASGSTD  133 (825)
T ss_pred             eeccCCcceeeecCcch-hhhcccccCCceeeeehhh----------hhhhhhhhccccCcceeeeccceE-Eecccccc
Confidence            57899999999999987 7999999999999999987          455788999999999999999998 78999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      +.+++||++..      .|.+.+.+|...|..++|+|+| .++++|+.|.+++|||++.++.   +..+..|.+.+.++.
T Consensus       134 td~~iwD~Rk~------Gc~~~~~s~~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk~---~~ef~~~e~~v~sle  203 (825)
T KOG0267|consen  134 TDLKIWDIRKK------GCSHTYKSHTRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGKL---SKEFKSHEGKVQSLE  203 (825)
T ss_pred             ccceehhhhcc------CceeeecCCcceeEEEeecCCC-ceeeccCCcceeeeeccccccc---ccccccccccccccc
Confidence            99999999954      4788899999999999999998 7999999999999999999984   888999999999999


Q ss_pred             eCCCCCc--cCCCCceEEeeecceee
Q 020480          281 LNASFRL--SHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       281 ~~p~~~~--~~~~d~~~~~~~~~~~~  304 (325)
                      |+|..-+  +||.|.++++|++..+.
T Consensus       204 ~hp~e~Lla~Gs~d~tv~f~dletfe  229 (825)
T KOG0267|consen  204 FHPLEVLLAPGSSDRTVRFWDLETFE  229 (825)
T ss_pred             cCchhhhhccCCCCceeeeeccceeE
Confidence            9998775  89999999999998553

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.84  E-value=3e-19  Score=159.62  Aligned_cols=197  Identities=16%  Similarity=0.229  Sum_probs=157.6

Q ss_pred             ceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEec
Q 020480           44 SLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQIN  123 (325)
Q Consensus        44 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (325)
                      ..+++++|++          +.++.|.     +++.++||+..                           ..+-++..-.
T Consensus       353 i~~l~YSpDg----------q~iaTG~-----eDgKVKvWn~~---------------------------SgfC~vTFte  390 (893)
T KOG0291|consen  353 ITSLAYSPDG----------QLIATGA-----EDGKVKVWNTQ---------------------------SGFCFVTFTE  390 (893)
T ss_pred             eeeEEECCCC----------cEEEecc-----CCCcEEEEecc---------------------------CceEEEEecc
Confidence            6688888887          4565443     45588888764                           2356677778


Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-CCCceEEEEecCCCCCeEEEEeCCC-
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-HSTEGYGLSWSKFKEGHLLSGSDDA-  201 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~dg-  201 (325)
                      |++.|+.+.|+..+ +.+++.+-||+|+.||+..          ....+++.. ..-...+++..|.|. ++..|+.|. 
T Consensus       391 Hts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkR----------YrNfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F  458 (893)
T KOG0291|consen  391 HTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKR----------YRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSF  458 (893)
T ss_pred             CCCceEEEEEEecC-CEEEEeecCCeEEeeeecc----------cceeeeecCCCceeeeEEEEcCCCC-EEEeeccceE
Confidence            99999999999988 7999999999999999976          333455542 234567889999898 788888775 


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEe
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL  281 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~  281 (325)
                      .|.+|+++++      +.+..+.+|.++|.+++|+|.+ ..||+++.|.+||+||+-....  .+.++. +...+..++|
T Consensus       459 ~IfvWS~qTG------qllDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~--~vEtl~-i~sdvl~vsf  528 (893)
T KOG0291|consen  459 EIFVWSVQTG------QLLDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSG--TVETLE-IRSDVLAVSF  528 (893)
T ss_pred             EEEEEEeecC------eeeehhcCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccCc--eeeeEe-eccceeEEEE
Confidence            4999999999      5688889999999999999997 6999999999999999987653  245543 6788999999


Q ss_pred             CCCCCc--cCCCCceEEeeecceee
Q 020480          282 NASFRL--SHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       282 ~p~~~~--~~~~d~~~~~~~~~~~~  304 (325)
                      .|+|+-  .+..||.+.+|+.....
T Consensus       529 rPdG~elaVaTldgqItf~d~~~~~  553 (893)
T KOG0291|consen  529 RPDGKELAVATLDGQITFFDIKEAV  553 (893)
T ss_pred             cCCCCeEEEEEecceEEEEEhhhce
Confidence            999983  67789999999875443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.2e-19  Score=159.69  Aligned_cols=172  Identities=20%  Similarity=0.310  Sum_probs=145.4

Q ss_pred             CCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-CCCceEE
Q 020480          105 DFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-HSTEGYG  183 (325)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~  183 (325)
                      .++.|+...+++..+..+. ...|+++.|+++| ..||+|..+|.|.|||...          .+.+..+.+ |...|-+
T Consensus       198 ~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~----------~k~~~~~~~~h~~rvg~  265 (484)
T KOG0305|consen  198 SVYLWSASSGSVTELCSFG-EELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKE----------QKKTRTLRGSHASRVGS  265 (484)
T ss_pred             eEEEEecCCCceEEeEecC-CCceEEEEECCCC-CEEEEeecCCeEEEEehhh----------ccccccccCCcCceeEE
Confidence            4456777777766655555 8999999999999 7999999999999999987          455667777 9999999


Q ss_pred             EEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC
Q 020480          184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS  263 (325)
Q Consensus       184 l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  263 (325)
                      ++|+  .. .+.+|+.|+.|..+|++....     ....+.+|...|+.+.|++++ .++|+|+.|+.+.|||.....  
T Consensus       266 laW~--~~-~lssGsr~~~I~~~dvR~~~~-----~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~--  334 (484)
T KOG0305|consen  266 LAWN--SS-VLSSGSRDGKILNHDVRISQH-----VVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPE--  334 (484)
T ss_pred             Eecc--Cc-eEEEecCCCcEEEEEEecchh-----hhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCcc--
Confidence            9998  33 799999999999999998754     222478899999999999997 799999999999999996666  


Q ss_pred             CCeeEeeccCCCeeEEEeCCCCC--c---cCCCCceEEeeec
Q 020480          264 KPVQSVVAHQSEVGVSILNASFR--L---SHEDTCTCTHRHS  300 (325)
Q Consensus       264 ~~~~~~~~h~~~v~~i~~~p~~~--~---~~~~d~~~~~~~~  300 (325)
                       +...+..|.+.|.+++|+|...  +   -|+.|.++++|+.
T Consensus       335 -p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~  375 (484)
T KOG0305|consen  335 -PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNT  375 (484)
T ss_pred             -ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEc
Confidence             6888999999999999999644  3   5677899999875

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.84  E-value=1.4e-19  Score=143.26  Aligned_cols=181  Identities=19%  Similarity=0.286  Sum_probs=147.5

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ...+|.+.|.+++|+.+| ..+|+|+.|+++.+|++..        .+........+|++.|-.++|+|..+.+|++++.
T Consensus        15 ~~~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~--------~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~   85 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLER--------DRFRKELVYRGHTDSVDQLCWDPKHPDLFATASG   85 (313)
T ss_pred             HhhhhhhcceEEEEcccC-ceeeecccCCceEEEEecc--------hhhhhhhcccCCCcchhhheeCCCCCcceEEecC
Confidence            345689999999999999 7999999999999999986        3333344567899999999999999999999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC-----------------
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-----------------  262 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-----------------  262 (325)
                      |.+|++||++.+      ++..........+ .+.|+|+| .++++++.|..|.+.|.|+.+.                 
T Consensus        86 dk~ir~wd~r~~------k~~~~i~~~~eni-~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~  157 (313)
T KOG1407|consen   86 DKTIRIWDIRSG------KCTARIETKGENI-NITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNN  157 (313)
T ss_pred             CceEEEEEeccC------cEEEEeeccCcce-EEEEcCCC-CEEEEecCcccEEEEEecccceeehhcccceeeeeeecC
Confidence            999999999988      4555554433334 57899987 5888999999999999887321                 


Q ss_pred             ---------------------CCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecceee-------eccCeeEE
Q 020480          263 ---------------------SKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYLL-------YKFPFFVL  312 (325)
Q Consensus       263 ---------------------~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~-------~~~~~~~~  312 (325)
                                           .+|+.++++|.....||.|+|+|+.  +|+.|..+.+||+.-++       ..||+-.+
T Consensus       158 ~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTl  237 (313)
T KOG1407|consen  158 SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTL  237 (313)
T ss_pred             CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEE
Confidence                                 2678888999999999999999996  89999999999985543       45777777


Q ss_pred             EeecC
Q 020480          313 VFPLF  317 (325)
Q Consensus       313 ~~~~~  317 (325)
                      .|.--
T Consensus       238 SFS~d  242 (313)
T KOG1407|consen  238 SFSHD  242 (313)
T ss_pred             EeccC
Confidence            76543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=4.2e-20  Score=157.52  Aligned_cols=160  Identities=19%  Similarity=0.168  Sum_probs=138.0

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      ......|.++.|..+| .++|+|...|.|+|||..+          ...++.+.+|+.++..+.|+|.+...+++|+.|+
T Consensus        65 srFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~----------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~  133 (487)
T KOG0310|consen   65 SRFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKS----------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDK  133 (487)
T ss_pred             HhhccceeEEEeecCC-eEEEccCCcCcEEEecccc----------HHHHHHHhhccCceeEEEecccCCeEEEecCCCc
Confidence            3467889999999999 7999999999999999654          3456778899999999999999998999999999


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEe
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL  281 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~  281 (325)
                      .+++||+.+.      .....+.+|+..|.+.+|+|.+.++++|||.||.|++||+|....  .+.++. |..+|-++.+
T Consensus       134 v~k~~d~s~a------~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~--~v~eln-hg~pVe~vl~  204 (487)
T KOG0310|consen  134 VVKYWDLSTA------YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS--RVVELN-HGCPVESVLA  204 (487)
T ss_pred             eEEEEEcCCc------EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc--eeEEec-CCCceeeEEE
Confidence            9999999986      235578899999999999998888999999999999999998853  466654 8999999999


Q ss_pred             CCCCCc-cCCCCceEEeeecc
Q 020480          282 NASFRL-SHEDTCTCTHRHSR  301 (325)
Q Consensus       282 ~p~~~~-~~~~d~~~~~~~~~  301 (325)
                      -|.|.+ ..+.-..+++||+.
T Consensus       205 lpsgs~iasAgGn~vkVWDl~  225 (487)
T KOG0310|consen  205 LPSGSLIASAGGNSVKVWDLT  225 (487)
T ss_pred             cCCCCEEEEcCCCeEEEEEec
Confidence            999764 33345689999975

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.84  E-value=2.4e-19  Score=150.92  Aligned_cols=215  Identities=15%  Similarity=0.205  Sum_probs=160.9

Q ss_pred             HHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCC
Q 020480           19 EEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARH   98 (325)
Q Consensus        19 ~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~   98 (325)
                      .+.-++++.+.++...+..|+..  +.++.+.|+...          .+.+     ..+..|+||...+.          
T Consensus       241 ~~av~~d~~s~q~l~~~~Gh~kk--i~~v~~~~~~~~----------v~~a-----Sad~~i~vws~~~~----------  293 (506)
T KOG0289|consen  241 KTAVLFDKPSNQILATLKGHTKK--ITSVKFHKDLDT----------VITA-----SADEIIRVWSVPLS----------  293 (506)
T ss_pred             CceEEEecchhhhhhhccCcceE--EEEEEeccchhh----------eeec-----CCcceEEeeccccc----------
Confidence            35556777777788888888766  778888886542          2111     22236777765322          


Q ss_pred             CCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec--
Q 020480           99 YDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG--  176 (325)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~--  176 (325)
                                      . .......|.++|+.+..+|.| .+|++++.||...+.|++.        ++.  +.....  
T Consensus       294 ----------------s-~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~--------g~~--lt~vs~~~  345 (506)
T KOG0289|consen  294 ----------------S-EPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISS--------GSQ--LTVVSDET  345 (506)
T ss_pred             ----------------c-CccccccccccceeeeeccCC-cEEEEecCCceEEEEEccC--------CcE--EEEEeecc
Confidence                            1 112356899999999999999 7999999999999999987        332  222222  


Q ss_pred             CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEE
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD  256 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd  256 (325)
                      ..-.+++.+|+|+|. +|.+|..||.++|||+....      .+..|.+|+++|..++|+.+| +++|+++.|+.|++||
T Consensus       346 s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~------~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwD  417 (506)
T KOG0289|consen  346 SDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQT------NVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWD  417 (506)
T ss_pred             ccceeEEeeEcCCce-EEeccCCCceEEEEEcCCcc------ccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEE
Confidence            223589999999999 99999999999999999874      467789999999999999987 7999999999999999


Q ss_pred             ccCCCCCCCeeEeec-cCCCeeEEEeCCCCCc--cCCCCceEEeee
Q 020480          257 LRTPSVSKPVQSVVA-HQSEVGVSILNASFRL--SHEDTCTCTHRH  299 (325)
Q Consensus       257 ~~~~~~~~~~~~~~~-h~~~v~~i~~~p~~~~--~~~~d~~~~~~~  299 (325)
                      +|..+.   +.++.- ...++.++.|++.|.+  .+|.+-.+.+.+
T Consensus       418 LRKl~n---~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  418 LRKLKN---FKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             ehhhcc---cceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence            998875   444422 2347999999999997  445555554443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=3.2e-20  Score=150.66  Aligned_cols=185  Identities=20%  Similarity=0.320  Sum_probs=152.6

Q ss_pred             CCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeC------CCCCC--------CC------------
Q 020480          109 FGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDY------SKHPS--------KP------------  162 (325)
Q Consensus       109 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~------~~~~~--------~~------------  162 (325)
                      |+...+.+. .+..+|.+.|++++|++++ .++++++.|++-+||..      ..+..        +.            
T Consensus       175 Ws~Esg~CL-~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~  252 (481)
T KOG0300|consen  175 WSLESGACL-ATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDS  252 (481)
T ss_pred             Eeeccccce-eeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccc
Confidence            444555544 3467899999999999998 79999999999999973      22100        00            


Q ss_pred             --CCC--CCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecC
Q 020480          163 --PLD--GACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR  238 (325)
Q Consensus       163 --~~~--~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  238 (325)
                        +.+  ....|+..+.+|.+.|.+..|-..+. .+++++.|.+..+||++++      .++..+.+|....+.++-+|.
T Consensus       253 ~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRTAnlwDVEtg------e~v~~LtGHd~ELtHcstHpt  325 (481)
T KOG0300|consen  253 SEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRTANLWDVETG------EVVNILTGHDSELTHCSTHPT  325 (481)
T ss_pred             ccccCCceeeeeeeeeeccccceEehhhhcCcc-eeeeeeccccceeeeeccC------ceeccccCcchhccccccCCc
Confidence              001  12346678899999999999999888 8999999999999999998      568889999999999999998


Q ss_pred             CCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc-cCCCCceEEeeecceeee
Q 020480          239 HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL-SHEDTCTCTHRHSRYLLY  305 (325)
Q Consensus       239 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~~~~~~  305 (325)
                      . .++++.+.|-+.++||+|..-  ..+..+++|...|+++.|+-+.++ ++++|.++++|+++.+..
T Consensus       326 Q-rLVvTsSrDtTFRLWDFReaI--~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRs  390 (481)
T KOG0300|consen  326 Q-RLVVTSSRDTTFRLWDFREAI--QSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRS  390 (481)
T ss_pred             c-eEEEEeccCceeEeccchhhc--ceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccC
Confidence            4 799999999999999999443  368889999999999999998876 999999999999987654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.84  E-value=9.3e-20  Score=144.64  Aligned_cols=170  Identities=17%  Similarity=0.156  Sum_probs=144.3

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ...+|..+++.+.|+.+| .+|.+|+.|..+.||-...          ...+.++.||++.|++++.+-+.. .++||+.
T Consensus         5 ~l~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~n----------GerlGty~GHtGavW~~Did~~s~-~liTGSA   72 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLN----------GERLGTYDGHTGAVWCCDIDWDSK-HLITGSA   72 (327)
T ss_pred             ccccCccccceEEecCCC-cEEEEecCCCCceEEEecC----------CceeeeecCCCceEEEEEecCCcc-eeeeccc
Confidence            456899999999999999 7999999999999998755          355889999999999999998888 8999999


Q ss_pred             CCcEEEEeCCCCCCCC-----------------------------------------------cccceEeeecCCccEEE
Q 020480          200 DAQICLWDINAAPKNK-----------------------------------------------SLEAMQIFKVHEGVVED  232 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~-----------------------------------------------~~~~~~~~~~~~~~v~~  232 (325)
                      |.++++||+.+++...                                               .-.|...+..+.+.++.
T Consensus        73 D~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~  152 (327)
T KOG0643|consen   73 DQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITS  152 (327)
T ss_pred             cceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceee
Confidence            9999999999885210                                               00134444556778999


Q ss_pred             EEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecceee
Q 020480          233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       233 v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~  304 (325)
                      +-|.|.+ .+|++|..||.|..||++++..  .+.+...|...|+.++++|+..+  +++.|.+.++||.+.+.
T Consensus       153 a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~--~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~  223 (327)
T KOG0643|consen  153 ALWGPLG-ETIIAGHEDGSISIYDARTGKE--LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE  223 (327)
T ss_pred             eeecccC-CEEEEecCCCcEEEEEcccCce--eeechhhhccccccccccCCcceEEecccCccceeeecccee
Confidence            9999997 5888999999999999999875  46666789999999999999985  99999999999987654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.83  E-value=2.3e-20  Score=148.06  Aligned_cols=234  Identities=14%  Similarity=0.155  Sum_probs=171.3

Q ss_pred             hhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480           14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE   93 (325)
Q Consensus        14 ~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~   93 (325)
                      ...-|+++|+|+..++.   .+...+.+.|+.+++|.+.++          .+++.+....+-...+.+.++..+..+. 
T Consensus        69 TGSAD~t~kLWDv~tGk---~la~~k~~~~Vk~~~F~~~gn----------~~l~~tD~~mg~~~~v~~fdi~~~~~~~-  134 (327)
T KOG0643|consen   69 TGSADQTAKLWDVETGK---QLATWKTNSPVKRVDFSFGGN----------LILASTDKQMGYTCFVSVFDIRDDSSDI-  134 (327)
T ss_pred             eccccceeEEEEcCCCc---EEEEeecCCeeEEEeeccCCc----------EEEEEehhhcCcceEEEEEEccCChhhh-
Confidence            44467899999998863   456667778899999999885          4566666666666778888775331100 


Q ss_pred             cccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE
Q 020480           94 NDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR  173 (325)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~  173 (325)
                            ..          .+|   ..+...+.+.++.+-|.|.+ ..|++|..||.|..||+++        + ...+..
T Consensus       135 ------~s----------~ep---~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~--------g-~~~v~s  185 (327)
T KOG0643|consen  135 ------DS----------EEP---YLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDART--------G-KELVDS  185 (327)
T ss_pred             ------cc----------cCc---eEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEccc--------C-ceeeec
Confidence                  00          122   22344577999999999998 6999999999999999987        2 123444


Q ss_pred             EecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc-E
Q 020480          174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY-L  252 (325)
Q Consensus       174 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~-i  252 (325)
                      -..|+..|++++++|+.. +++|++.|.+-++||+++.      ..+.++. ...+|++.+++|....+++-|+.+.. |
T Consensus       186 ~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~tl------~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dV  257 (327)
T KOG0643|consen  186 DEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVRTL------EVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDV  257 (327)
T ss_pred             hhhhccccccccccCCcc-eEEecccCccceeeeccce------eeEEEee-ecccccceecccccceEEecCCceeeee
Confidence            567899999999999998 8999999999999999976      4566665 35689999999986555555554321 2


Q ss_pred             EEEEccCCCCC---------CCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEee
Q 020480          253 LIWDLRTPSVS---------KPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHR  298 (325)
Q Consensus       253 ~iwd~~~~~~~---------~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~  298 (325)
                      .-=+.|.++..         +.+..+++|-+||++|+|+|+|+.  +|+.|+.+++.
T Consensus       258 TTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h  314 (327)
T KOG0643|consen  258 TTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH  314 (327)
T ss_pred             eeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence            22222222110         135667899999999999999995  99999999985

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=2e-19  Score=141.10  Aligned_cols=173  Identities=18%  Similarity=0.224  Sum_probs=142.1

Q ss_pred             eEEEEEeccCCCeeEEEecC--CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCC-
Q 020480          116 VQIIQQINHDGEVNRARYMP--QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG-  192 (325)
Q Consensus       116 ~~~~~~~~h~~~v~~v~~~~--~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~-  192 (325)
                      ..+....+|.++|..++|..  .| .+||+++.||.|.||....        ++.........|...|.+++|.|.+-+ 
T Consensus        47 ~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiWke~~--------g~w~k~~e~~~h~~SVNsV~wapheygl  117 (299)
T KOG1332|consen   47 KLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIWKEEN--------GRWTKAYEHAAHSASVNSVAWAPHEYGL  117 (299)
T ss_pred             eeeeEecCCCCCeeEEeecccccC-cEeeEeecCceEEEEecCC--------Cchhhhhhhhhhcccceeecccccccce
Confidence            44455678999999999986  56 7999999999999999887        666667778899999999999998643 


Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecC---C----------CcEEEEEecCCcEEEEEccC
Q 020480          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR---H----------EYLFGSVGDDQYLLIWDLRT  259 (325)
Q Consensus       193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~----------~~~l~s~~~dg~i~iwd~~~  259 (325)
                      .|++++.||.|.|.+.+.... .  .......+|.-.|++++|.|.   |          ...|++|+.|..|+||+...
T Consensus       118 ~LacasSDG~vsvl~~~~~g~-w--~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~  194 (299)
T KOG1332|consen  118 LLACASSDGKVSVLTYDSSGG-W--TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS  194 (299)
T ss_pred             EEEEeeCCCcEEEEEEcCCCC-c--cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCC
Confidence            578899999999999987622 1  223456789999999999985   2          14599999999999999998


Q ss_pred             CCCCCCeeEeeccCCCeeEEEeCCCCC------ccCCCCceEEeeecc
Q 020480          260 PSVSKPVQSVVAHQSEVGVSILNASFR------LSHEDTCTCTHRHSR  301 (325)
Q Consensus       260 ~~~~~~~~~~~~h~~~v~~i~~~p~~~------~~~~~d~~~~~~~~~  301 (325)
                      .+ ...-.++.+|.+.|+.++|.|.--      .+++.|+++.+|..+
T Consensus       195 ~~-w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  195 DS-WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             cc-hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence            74 334556899999999999999643      289999999999765

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=1.8e-19  Score=146.31  Aligned_cols=247  Identities=15%  Similarity=0.232  Sum_probs=182.2

Q ss_pred             hhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEE----EECCCCC
Q 020480           16 LINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQ----VQLPLDD   91 (325)
Q Consensus        16 ~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~----~~~~~~~   91 (325)
                      .-|.+-+||-.....+.-.+..|...  +-++.|.+.+.          -++.++....     -.||+    +..|...
T Consensus       167 SADhTA~iWs~Esg~CL~~Y~GH~GS--VNsikfh~s~~----------L~lTaSGD~t-----aHIW~~av~~~vP~~~  229 (481)
T KOG0300|consen  167 SADHTARIWSLESGACLATYTGHTGS--VNSIKFHNSGL----------LLLTASGDET-----AHIWKAAVNWEVPSNN  229 (481)
T ss_pred             ccccceeEEeeccccceeeecccccc--eeeEEeccccc----------eEEEccCCcc-----hHHHHHhhcCcCCCCC
Confidence            45678899999999888888888776  66888888653          3344443222     22333    3345432


Q ss_pred             CCcccC------CCCcccCCCC---CCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCC
Q 020480           92 SENDAR------HYDDDRSDFG---GFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP  162 (325)
Q Consensus        92 ~~~~~~------~~~~~~~~~~---~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~  162 (325)
                      ...+-+      ..++.+.+..   .-+...-+..+....+|.+.|.+..|-..| ..+++++.|.+..+||+.+     
T Consensus       230 a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vTaSWDRTAnlwDVEt-----  303 (481)
T KOG0300|consen  230 APSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMVTASWDRTANLWDVET-----  303 (481)
T ss_pred             CCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceeeeeeccccceeeeecc-----
Confidence            221111      1111111111   111112244556667899999999999877 7999999999999999998     


Q ss_pred             CCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcE
Q 020480          163 PLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYL  242 (325)
Q Consensus       163 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  242 (325)
                           ..++..+.||....+.++-+|... ++++++.|.+.++||++..     +..+..|++|...|+++.|..+.  .
T Consensus       304 -----ge~v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFRea-----I~sV~VFQGHtdtVTS~vF~~dd--~  370 (481)
T KOG0300|consen  304 -----GEVVNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREA-----IQSVAVFQGHTDTVTSVVFNTDD--R  370 (481)
T ss_pred             -----CceeccccCcchhccccccCCcce-EEEEeccCceeEeccchhh-----cceeeeecccccceeEEEEecCC--c
Confidence                 566888999999999999999988 9999999999999999954     35678899999999999999864  5


Q ss_pred             EEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          243 FGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       243 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      +++|++|.+|++||+|+++.  |+.++. ..++++.++.+..+.+  .--+...++++|+.
T Consensus       371 vVSgSDDrTvKvWdLrNMRs--plATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDln  428 (481)
T KOG0300|consen  371 VVSGSDDRTVKVWDLRNMRS--PLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN  428 (481)
T ss_pred             eeecCCCceEEEeeeccccC--cceeee-cCCccceeEeecCCceEEeccCCceEEEEecC
Confidence            78999999999999999886  788775 4678999999987764  33456678887764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.82  E-value=2.6e-19  Score=162.82  Aligned_cols=218  Identities=20%  Similarity=0.262  Sum_probs=175.5

Q ss_pred             hhhhHHHHhhhHhcChhHHHH-hhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCC
Q 020480           14 ERLINEEYKIWKKNTPFLYDL-VITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDS   92 (325)
Q Consensus        14 ~~~~~~~~~iw~~~~~~~y~~-~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~   92 (325)
                      ....+.++++|+.+..++-.. +..|...  ++++++.-..          ..++.|+...     .+.+|++.      
T Consensus       223 ~~s~~~tl~~~~~~~~~~i~~~l~GH~g~--V~~l~~~~~~----------~~lvsgS~D~-----t~rvWd~~------  279 (537)
T KOG0274|consen  223 SGSDDSTLHLWDLNNGYLILTRLVGHFGG--VWGLAFPSGG----------DKLVSGSTDK-----TERVWDCS------  279 (537)
T ss_pred             ecCCCceeEEeecccceEEEeeccCCCCC--ceeEEEecCC----------CEEEEEecCC-----cEEeEecC------
Confidence            344567778888888776666 8888766  7777776522          2455555433     57777652      


Q ss_pred             CcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE
Q 020480           93 ENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL  172 (325)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~  172 (325)
                                          ++..... ..+|++.|.++...+   ..+++|+.|.+|++|++..          ...+.
T Consensus       280 --------------------sg~C~~~-l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n----------~~~l~  325 (537)
T KOG0274|consen  280 --------------------TGECTHS-LQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTN----------GACLN  325 (537)
T ss_pred             --------------------CCcEEEE-ecCCCceEEEEEccC---ceEeeccCCceEEEEeccC----------cceEE
Confidence                                3444433 457999999999877   5788999999999999997          34477


Q ss_pred             EEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcE
Q 020480          173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL  252 (325)
Q Consensus       173 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i  252 (325)
                      .+.+|.++|.++..+  +. ++++|+.|++|++||+.++      +++..+.+|...|+++.+.+.  ..+++|+.|++|
T Consensus       326 l~~~h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~------~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~I  394 (537)
T KOG0274|consen  326 LLRGHTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPRTG------KCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTI  394 (537)
T ss_pred             EeccccccEEEEEec--CC-EEEEEecCceEEEEEhhhc------eeeeeecCCcceEEEEEecCc--ceEEeeeeccce
Confidence            777899999999998  45 8999999999999999976      789999999999999988753  578899999999


Q ss_pred             EEEEccCC-CCCCCeeEeeccCCCeeEEEeCCCCCccCCCCceEEeeecce
Q 020480          253 LIWDLRTP-SVSKPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHSRY  302 (325)
Q Consensus       253 ~iwd~~~~-~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~~~  302 (325)
                      ++||+++. ++   +.++.+|.+-+.++.+..+-.++++.|+++++||...
T Consensus       395 kvWdl~~~~~c---~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~  442 (537)
T KOG0274|consen  395 KVWDLRTKRKC---IHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEE  442 (537)
T ss_pred             EeecCCchhhh---hhhhcCCcccccccccccceeEeccccccEEEeeccc
Confidence            99999999 64   8999999999988888887777999999999997644

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.82  E-value=7.9e-19  Score=144.90  Aligned_cols=164  Identities=16%  Similarity=0.198  Sum_probs=141.5

Q ss_pred             EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480          118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (325)
Q Consensus       118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  197 (325)
                      ......|+..|.+++.+|+. +++|+|+.|-.-.+|+..+        +  .....+.+|...|+++.|+.++. +|+||
T Consensus        57 ~~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~--------g--e~~~eltgHKDSVt~~~Fshdgt-lLATG  124 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDIST--------G--EFAGELTGHKDSVTCCSFSHDGT-LLATG  124 (399)
T ss_pred             eeehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccC--------C--cceeEecCCCCceEEEEEccCce-EEEec
Confidence            44566899999999999955 8999999999999999988        3  34678899999999999999999 99999


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG  277 (325)
Q Consensus       198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  277 (325)
                      +.+|.|+||+..++..      ...+...-..+.=+.|||.+ .+|++|+.||.+-+|.+.+..   ..+.+.+|..+++
T Consensus       125 dmsG~v~v~~~stg~~------~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~---~~kv~~Gh~~~ct  194 (399)
T KOG0296|consen  125 DMSGKVLVFKVSTGGE------QWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQA---LCKVMSGHNSPCT  194 (399)
T ss_pred             CCCccEEEEEcccCce------EEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcc---eeeEecCCCCCcc
Confidence            9999999999998743      33444344567779999976 799999999999999999875   3788899999999


Q ss_pred             EEEeCCCCCc--cCCCCceEEeeeccee
Q 020480          278 VSILNASFRL--SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       278 ~i~~~p~~~~--~~~~d~~~~~~~~~~~  303 (325)
                      +=.|.|+|+.  ++..|+++++|+...-
T Consensus       195 ~G~f~pdGKr~~tgy~dgti~~Wn~ktg  222 (399)
T KOG0296|consen  195 CGEFIPDGKRILTGYDDGTIIVWNPKTG  222 (399)
T ss_pred             cccccCCCceEEEEecCceEEEEecCCC
Confidence            9999999984  7888999999987553

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.82  E-value=3.4e-19  Score=150.05  Aligned_cols=162  Identities=20%  Similarity=0.240  Sum_probs=140.0

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      .-+|...|+.+.|+|+. ..+++++.|-.|+||....          .........|..+|+.+..+|.|. +|++++.|
T Consensus       257 ~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~----------~s~~~~~~~h~~~V~~ls~h~tge-YllsAs~d  324 (506)
T KOG0289|consen  257 LKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPL----------SSEPTSSRPHEEPVTGLSLHPTGE-YLLSASND  324 (506)
T ss_pred             ccCcceEEEEEEeccch-hheeecCCcceEEeecccc----------ccCccccccccccceeeeeccCCc-EEEEecCC
Confidence            45799999999999987 6899999999999999886          222345678999999999999999 89999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeec--CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKV--HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGV  278 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  278 (325)
                      |+....|++.+..      +.....  ..-.+++.+|||+| .+|++|..||.|+|||+..+..   +..+.+|.++|..
T Consensus       325 ~~w~Fsd~~~g~~------lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~---~a~Fpght~~vk~  394 (506)
T KOG0289|consen  325 GTWAFSDISSGSQ------LTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTN---VAKFPGHTGPVKA  394 (506)
T ss_pred             ceEEEEEccCCcE------EEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccc---cccCCCCCCceeE
Confidence            9999999998843      333222  23468999999998 7999999999999999999884   8889999999999


Q ss_pred             EEeCCCCCc--cCCCCceEEeeecceee
Q 020480          279 SILNASFRL--SHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       279 i~~~p~~~~--~~~~d~~~~~~~~~~~~  304 (325)
                      |+|+.+|-+  ++++|+.+++||+|...
T Consensus       395 i~FsENGY~Lat~add~~V~lwDLRKl~  422 (506)
T KOG0289|consen  395 ISFSENGYWLATAADDGSVKLWDLRKLK  422 (506)
T ss_pred             EEeccCceEEEEEecCCeEEEEEehhhc
Confidence            999999986  78899999999998765

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.82  E-value=2e-19  Score=160.70  Aligned_cols=242  Identities=18%  Similarity=0.173  Sum_probs=184.9

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      -++.++||++.+-.+...+-+.    -.+...|.|...          .+++|+.++     .+.++++.-.        
T Consensus       392 a~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpgd~----------~Iv~G~k~G-----el~vfdlaS~--------  444 (888)
T KOG0306|consen  392 AGESIKIWNRDTLKCIRTITCG----YILASKFVPGDR----------YIVLGTKNG-----ELQVFDLASA--------  444 (888)
T ss_pred             CCCcEEEEEccCcceeEEeccc----cEEEEEecCCCc----------eEEEeccCC-----ceEEEEeehh--------
Confidence            4588999999887666665555    367888888763          677888755     6777777411        


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-  175 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-  175 (325)
                                       .-++.  ..+|.+.|..++.+|++ ..+++|+.|.+|++||........   +..+.+..+. 
T Consensus       445 -----------------~l~Et--i~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~---gt~~k~lsl~~  501 (888)
T KOG0306|consen  445 -----------------SLVET--IRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVP---GTQKKVLSLKH  501 (888)
T ss_pred             -----------------hhhhh--hhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccC---cccceeeeecc
Confidence                             11222  23799999999999999 799999999999999986432211   1111111111 


Q ss_pred             ----cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc
Q 020480          176 ----GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY  251 (325)
Q Consensus       176 ----~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~  251 (325)
                          .-...|.++.++|++. +|+.+=.|.+|+||-+.+.      +..-++.+|.-+|.++..+|++ .+++|||.|..
T Consensus       502 ~rtLel~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtl------KFflsLYGHkLPV~smDIS~DS-klivTgSADKn  573 (888)
T KOG0306|consen  502 TRTLELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTL------KFFLSLYGHKLPVLSMDISPDS-KLIVTGSADKN  573 (888)
T ss_pred             ceEEeccccEEEEEEcCCCc-EEEEEeccCeEEEEEecce------eeeeeecccccceeEEeccCCc-CeEEeccCCCc
Confidence                2346799999999999 8999999999999999876      4567789999999999999997 79999999999


Q ss_pred             EEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecceee--e---ccCeeEEEeecCCC
Q 020480          252 LLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYLL--Y---KFPFFVLVFPLFPS  319 (325)
Q Consensus       252 i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~--~---~~~~~~~~~~~~~~  319 (325)
                      |++|-+.-+.|   -.++.+|...|.++.|-|...+  ++|.|+.++-||...+.  .   .-....-|...+|.
T Consensus       574 VKiWGLdFGDC---HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~  645 (888)
T KOG0306|consen  574 VKIWGLDFGDC---HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPN  645 (888)
T ss_pred             eEEeccccchh---hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCC
Confidence            99999999987   6778899999999999997664  99999999999765543  2   22234445555554

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=2.3e-18  Score=146.33  Aligned_cols=242  Identities=15%  Similarity=0.106  Sum_probs=177.9

Q ss_pred             HHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCC
Q 020480           19 EEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARH   98 (325)
Q Consensus        19 ~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~   98 (325)
                      ..+.+|..+.+....  ...-.+=|+..++-.|.+          ..++.|+...     .|++|.+.            
T Consensus        61 p~l~vw~i~k~~~~~--q~~v~Pg~v~al~s~n~G----------~~l~ag~i~g-----~lYlWels------------  111 (476)
T KOG0646|consen   61 PLLHVWEILKKDQVV--QYIVLPGPVHALASSNLG----------YFLLAGTISG-----NLYLWELS------------  111 (476)
T ss_pred             ccccccccCchhhhh--hhcccccceeeeecCCCc----------eEEEeecccC-----cEEEEEec------------
Confidence            356777777765554  122223346566666655          3455554433     78999874            


Q ss_pred             CCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC
Q 020480           99 YDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS  178 (325)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~  178 (325)
                                    .+.+.- ...+|-..|+|+.|+.+| ..|++|+.||.|.+|.+...-.... +....|.+.+..|+
T Consensus       112 --------------sG~LL~-v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~-~~~~~p~~~f~~Ht  174 (476)
T KOG0646|consen  112 --------------SGILLN-VLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADN-DHSVKPLHIFSDHT  174 (476)
T ss_pred             --------------cccHHH-HHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeeccccc-CCCccceeeeccCc
Confidence                          333332 236899999999999999 7999999999999999865433321 23568889999999


Q ss_pred             CceEEEEecCCC-CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEc
Q 020480          179 TEGYGLSWSKFK-EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL  257 (325)
Q Consensus       179 ~~v~~l~~~p~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~  257 (325)
                      -+|+++...+.+ +..++|+|.|.++++||+..+      ..+.++. ....+.+++.+|.+ +.+..|+.+|.|.+.++
T Consensus       175 lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g------~LLlti~-fp~si~av~lDpae-~~~yiGt~~G~I~~~~~  246 (476)
T KOG0646|consen  175 LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG------VLLLTIT-FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLL  246 (476)
T ss_pred             ceeEEEEecCCCccceEEEecCCceEEEEEeccc------eeeEEEe-cCCcceeEEEcccc-cEEEecCCcceEEeeeh
Confidence            999999987763 348999999999999999987      3344433 45679999999975 78889999999999988


Q ss_pred             cCCC-------------CCCCeeEeeccCC--CeeEEEeCCCCCc--cCCCCceEEeeecc------eee-eccCeeEEE
Q 020480          258 RTPS-------------VSKPVQSVVAHQS--EVGVSILNASFRL--SHEDTCTCTHRHSR------YLL-YKFPFFVLV  313 (325)
Q Consensus       258 ~~~~-------------~~~~~~~~~~h~~--~v~~i~~~p~~~~--~~~~d~~~~~~~~~------~~~-~~~~~~~~~  313 (325)
                      ....             ....+..+.+|..  +|+|++.+-+|.+  +|+.|+.+++|++.      ... .+-|+..+.
T Consensus       247 ~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~  326 (476)
T KOG0646|consen  247 FKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQ  326 (476)
T ss_pred             hcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeE
Confidence            6543             1123456678887  9999999999995  99999999999863      333 566777666


Q ss_pred             e
Q 020480          314 F  314 (325)
Q Consensus       314 ~  314 (325)
                      +
T Consensus       327 i  327 (476)
T KOG0646|consen  327 I  327 (476)
T ss_pred             e
Confidence            6

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.82  E-value=8.5e-19  Score=148.57  Aligned_cols=190  Identities=17%  Similarity=0.168  Sum_probs=146.3

Q ss_pred             EEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       119 ~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      +....|.++|+++.|+|.+...+.+.+.||+|++-|+..        .....+..+..-...+.+++|+.... .++.+.
T Consensus       228 ~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~--------~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~  298 (498)
T KOG4328|consen  228 YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG--------NISEEVLSLDTDNIWFSSLDFSAESR-SVLFGD  298 (498)
T ss_pred             EEeccCCccccceEecCCChhheeeeccCceeeeeeecc--------hhhHHHhhcCccceeeeeccccCCCc-cEEEee
Confidence            345689999999999999888999999999999999987        33333444444455678889988888 577777


Q ss_pred             CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCC-CeeEeeccCCCee
Q 020480          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK-PVQSVVAHQSEVG  277 (325)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~  277 (325)
                      .=|...+||+++...     ....+.-|...|..++++|..+.+|||||.|++.+|||+|...... |+...-.|+..|+
T Consensus       299 ~~G~f~~iD~R~~~s-----~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~  373 (498)
T KOG4328|consen  299 NVGNFNVIDLRTDGS-----EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVN  373 (498)
T ss_pred             cccceEEEEeecCCc-----cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceee
Confidence            777999999998754     2344566888999999999999999999999999999999766443 4455567999999


Q ss_pred             EEEeCCCCC-c-cCCCCceEEeeecceeeeccCeeEEEeecCCCccc
Q 020480          278 VSILNASFR-L-SHEDTCTCTHRHSRYLLYKFPFFVLVFPLFPSLQH  322 (325)
Q Consensus       278 ~i~~~p~~~-~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (325)
                      +..|+|.+- + +.+.|..+++|+...+..+.+-...+..-..+.||
T Consensus       374 sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rw  420 (498)
T KOG4328|consen  374 SAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRW  420 (498)
T ss_pred             eeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCccccc
Confidence            999999754 3 78899999999987555444433333333333333

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.82  E-value=3.3e-18  Score=135.48  Aligned_cols=200  Identities=17%  Similarity=0.215  Sum_probs=158.5

Q ss_pred             CCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEE
Q 020480           42 WPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQ  121 (325)
Q Consensus        42 ~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (325)
                      .++.+|+|.-++.          +++.|+...     ...++.+..-                         ........
T Consensus        21 ~~v~Sv~wn~~g~----------~lasgs~dk-----tv~v~n~e~~-------------------------r~~~~~~~   60 (313)
T KOG1407|consen   21 QKVHSVAWNCDGT----------KLASGSFDK-----TVSVWNLERD-------------------------RFRKELVY   60 (313)
T ss_pred             hcceEEEEcccCc----------eeeecccCC-----ceEEEEecch-------------------------hhhhhhcc
Confidence            3588999999885          555555433     5667766411                         11122234


Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      .+|.+.|-.++|.|..+.+||+++.|.+|++||.+.          .++...... +..-.-+.|+|++. +++.++.|.
T Consensus        61 ~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~----------~k~~~~i~~-~~eni~i~wsp~g~-~~~~~~kdD  128 (313)
T KOG1407|consen   61 RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS----------GKCTARIET-KGENINITWSPDGE-YIAVGNKDD  128 (313)
T ss_pred             cCCCcchhhheeCCCCCcceEEecCCceEEEEEecc----------CcEEEEeec-cCcceEEEEcCCCC-EEEEecCcc
Confidence            679999999999999889999999999999999987          344554443 33445788999998 899999999


Q ss_pred             cEEEEeCCCCCCC-----------------------------------CcccceEeeecCCccEEEEEeecCCCcEEEEE
Q 020480          202 QICLWDINAAPKN-----------------------------------KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV  246 (325)
Q Consensus       202 ~i~iwd~~~~~~~-----------------------------------~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~  246 (325)
                      .|...|.++.+..                                   ..++++..+++|...+.|+.|+|+| .+||+|
T Consensus       129 ~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~G-ryfA~G  207 (313)
T KOG1407|consen  129 RITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDG-RYFATG  207 (313)
T ss_pred             cEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCC-ceEeec
Confidence            9999998775311                                   3456788899999999999999998 799999


Q ss_pred             ecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEe
Q 020480          247 GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTH  297 (325)
Q Consensus       247 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~  297 (325)
                      +.|..+.+||+...-+   +..+..+.=+|..|.|+.+|++  +++.|-.+-+
T Consensus       208 sADAlvSLWD~~ELiC---~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDI  257 (313)
T KOG1407|consen  208 SADALVSLWDVDELIC---ERCISRLDWPVRTLSFSHDGRMLASASEDHFIDI  257 (313)
T ss_pred             cccceeeccChhHhhh---heeeccccCceEEEEeccCcceeeccCccceEEe
Confidence            9999999999998876   7788888999999999999997  7888877766

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.82  E-value=3.1e-18  Score=141.43  Aligned_cols=198  Identities=18%  Similarity=0.253  Sum_probs=150.1

Q ss_pred             HhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCC
Q 020480           34 LVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCAN  113 (325)
Q Consensus        34 ~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (325)
                      .+..|+.  ++.++...|+.+           ++    ..+++++.-.+|+..                          .
T Consensus        59 tF~~H~~--svFavsl~P~~~-----------l~----aTGGgDD~AflW~~~--------------------------~   95 (399)
T KOG0296|consen   59 TFDKHTD--SVFAVSLHPNNN-----------LV----ATGGGDDLAFLWDIS--------------------------T   95 (399)
T ss_pred             ehhhcCC--ceEEEEeCCCCc-----------eE----EecCCCceEEEEEcc--------------------------C
Confidence            3444554  499999999543           32    234456677788764                          1


Q ss_pred             CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCe
Q 020480          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (325)
Q Consensus       114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  193 (325)
                      +. ......+|+..|+++.|+.+| .+||+|+.+|.|+||...+          ......+..--..+.-+.|+|.+. .
T Consensus        96 ge-~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~st----------g~~~~~~~~e~~dieWl~WHp~a~-i  162 (399)
T KOG0296|consen   96 GE-FAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVST----------GGEQWKLDQEVEDIEWLKWHPRAH-I  162 (399)
T ss_pred             Cc-ceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEccc----------CceEEEeecccCceEEEEeccccc-E
Confidence            22 334567899999999999999 7999999999999999987          233444544556788999999888 8


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee-cc
Q 020480          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV-AH  272 (325)
Q Consensus       194 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~h  272 (325)
                      |+.|+.||.+.+|.+...      ...+.+.+|+..+++-.|.|+| ..++++..||+|++||+.++.   |+..+. ..
T Consensus       163 llAG~~DGsvWmw~ip~~------~~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~---p~~~~~~~e  232 (399)
T KOG0296|consen  163 LLAGSTDGSVWMWQIPSQ------ALCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQ---PLHKITQAE  232 (399)
T ss_pred             EEeecCCCcEEEEECCCc------ceeeEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCc---eeEEecccc
Confidence            999999999999999875      3467789999999999999998 578899999999999999997   476664 23


Q ss_pred             CCCeeEEEeCCCCCc--cCCCCceEEe
Q 020480          273 QSEVGVSILNASFRL--SHEDTCTCTH  297 (325)
Q Consensus       273 ~~~v~~i~~~p~~~~--~~~~d~~~~~  297 (325)
                      ..+..++.++..+..  .|+.++.+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~g~~e~~~~~  259 (399)
T KOG0296|consen  233 GLELPCISLNLAGSTLTKGNSEGVACG  259 (399)
T ss_pred             cCcCCccccccccceeEeccCCccEEE
Confidence            445677777766653  4555554444

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.82  E-value=6.7e-19  Score=141.70  Aligned_cols=174  Identities=18%  Similarity=0.153  Sum_probs=140.1

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE-----EEecCCCceEEEEecCCCCCeEE
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-----RLRGHSTEGYGLSWSKFKEGHLL  195 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~~l~~~p~~~~~l~  195 (325)
                      ...|.+.|+++...+...+++++|+.||.|.+||+..........-..+...     .-.+|.-.|.++.|-|...+.+.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            3568999999999998778999999999999999986432211111111111     11368889999999999998999


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCC--CcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC
Q 020480          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH--EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ  273 (325)
Q Consensus       196 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~  273 (325)
                      +++.|.+++|||..+.+.      ...|+ ..+.|++-+|+|-.  -.++|+|..|-.|++.|+.++..   .+++.+|.
T Consensus       119 ssSFDhtlKVWDtnTlQ~------a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~---sH~LsGHr  188 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQE------AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF---SHTLSGHR  188 (397)
T ss_pred             cccccceEEEeeccccee------eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc---eeeecccc
Confidence            999999999999998632      33343 45679999998842  25788999999999999999996   89999999


Q ss_pred             CCeeEEEeCCCCCc---cCCCCceEEeeecceee
Q 020480          274 SEVGVSILNASFRL---SHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       274 ~~v~~i~~~p~~~~---~~~~d~~~~~~~~~~~~  304 (325)
                      +.|.+|.|+|...+   +|+.|+.|++||+|...
T Consensus       189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras  222 (397)
T KOG4283|consen  189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS  222 (397)
T ss_pred             CceEEEEeccCceeEEEecCCCceEEEEEeeccc
Confidence            99999999999884   89999999999998763

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.81  E-value=9.4e-19  Score=159.18  Aligned_cols=169  Identities=24%  Similarity=0.314  Sum_probs=146.0

Q ss_pred             CCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecC
Q 020480          109 FGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK  188 (325)
Q Consensus       109 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p  188 (325)
                      |....+........+|.+.|.++++.. +..++++|+.|.++++||..+        +  .-..++.+|.+.|.++...+
T Consensus       233 ~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s--------g--~C~~~l~gh~stv~~~~~~~  301 (537)
T KOG0274|consen  233 WDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST--------G--ECTHSLQGHTSSVRCLTIDP  301 (537)
T ss_pred             eecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC--------C--cEEEEecCCCceEEEEEccC
Confidence            333445555555789999999999987 447999999999999999887        4  44788999999999998865


Q ss_pred             CCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeE
Q 020480          189 FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS  268 (325)
Q Consensus       189 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  268 (325)
                      .   .+++|+.|.+|++|++..+      .+++.+.+|...|+++..+  + .++++|+.|++|++||+++.++   +.+
T Consensus       302 ~---~~~sgs~D~tVkVW~v~n~------~~l~l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~c---l~s  366 (537)
T KOG0274|consen  302 F---LLVSGSRDNTVKVWDVTNG------ACLNLLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKC---LKS  366 (537)
T ss_pred             c---eEeeccCCceEEEEeccCc------ceEEEeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhcee---eee
Confidence            3   7889999999999999977      5688888899999999997  3 5899999999999999998885   999


Q ss_pred             eeccCCCeeEEEeCC-CCCccCCCCceEEeeeccee
Q 020480          269 VVAHQSEVGVSILNA-SFRLSHEDTCTCTHRHSRYL  303 (325)
Q Consensus       269 ~~~h~~~v~~i~~~p-~~~~~~~~d~~~~~~~~~~~  303 (325)
                      +.+|...|.++.+.+ .-.++|+.|+++++||++..
T Consensus       367 l~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~  402 (537)
T KOG0274|consen  367 LSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTK  402 (537)
T ss_pred             ecCCcceEEEEEecCcceEEeeeeccceEeecCCch
Confidence            999999999999999 55569999999999998776

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.81  E-value=3.3e-18  Score=158.67  Aligned_cols=241  Identities=16%  Similarity=0.179  Sum_probs=173.9

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEEC-CCCCCCcc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQL-PLDDSEND   95 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~-~~~~~~~~   95 (325)
                      ++.+.+.|+.|.|.....+..|...  +.+|.|+|++.          .++.|+..     .-++||.... +......+
T Consensus        47 vl~~~~~~~~~l~k~l~~m~~h~~s--v~CVR~S~dG~----------~lAsGSDD-----~~v~iW~~~~~~~~~~fgs  109 (942)
T KOG0973|consen   47 VLDEKEEKNENLPKHLCTMDDHDGS--VNCVRFSPDGS----------YLASGSDD-----RLVMIWERAEIGSGTVFGS  109 (942)
T ss_pred             ccchhhhhhcccchhheeeccccCc--eeEEEECCCCC----------eEeeccCc-----ceEEEeeecccCCcccccc
Confidence            3455556666667666677777655  77899999985          56555543     4678887752 11111100


Q ss_pred             cCCCCcccCCCCCCCCCCCceEEE-EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE
Q 020480           96 ARHYDDDRSDFGGFGCANGKVQII-QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL  174 (325)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  174 (325)
                      .  ...  .       ...+.+.+ ...+|.+.|..++|+|++ .++|+++.|++|.+|+..+          ...+.++
T Consensus       110 ~--g~~--~-------~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~t----------F~~~~vl  167 (942)
T KOG0973|consen  110 T--GGA--K-------NVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKT----------FELLKVL  167 (942)
T ss_pred             c--ccc--c-------ccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEcccc----------ceeeeee
Confidence            0  000  0       11233333 345799999999999988 7999999999999999988          4667889


Q ss_pred             ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCC----------------------------------------
Q 020480          175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN----------------------------------------  214 (325)
Q Consensus       175 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~----------------------------------------  214 (325)
                      .+|.+.|..+.|.|-|. +|++-+.|++|+||.+..-...                                        
T Consensus       168 ~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~  246 (942)
T KOG0973|consen  168 RGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKST  246 (942)
T ss_pred             ecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcce
Confidence            99999999999999999 8999999999999995441100                                        


Q ss_pred             ------CcccceEeeecCCccEEEEEeecC--------C----C----cEEEEEecCCcEEEEEccCCCCCCCeeEe-ec
Q 020480          215 ------KSLEAMQIFKVHEGVVEDVAWHLR--------H----E----YLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VA  271 (325)
Q Consensus       215 ------~~~~~~~~~~~~~~~v~~v~~~p~--------~----~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~  271 (325)
                            ...+.-..+-+|..++.+++|+|.        |    .    .++|+|+.|++|-||.....+   |+..+ .-
T Consensus       247 ~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R---Pl~vi~~l  323 (942)
T KOG0973|consen  247 IAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR---PLFVIHNL  323 (942)
T ss_pred             eEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC---chhhhhhh
Confidence                  000122345689999999999982        1    1    178999999999999997666   45544 33


Q ss_pred             cCCCeeEEEeCCCCC--ccCCCCceEEeeec
Q 020480          272 HQSEVGVSILNASFR--LSHEDTCTCTHRHS  300 (325)
Q Consensus       272 h~~~v~~i~~~p~~~--~~~~~d~~~~~~~~  300 (325)
                      ....|.+++|+|+|.  +.+|.||++.+...
T Consensus       324 f~~SI~DmsWspdG~~LfacS~DGtV~~i~F  354 (942)
T KOG0973|consen  324 FNKSIVDMSWSPDGFSLFACSLDGTVALIHF  354 (942)
T ss_pred             hcCceeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence            467899999999998  48999999998654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.81  E-value=2e-18  Score=139.29  Aligned_cols=152  Identities=18%  Similarity=0.283  Sum_probs=122.8

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCC-CeEEEEe
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE-GHLLSGS  198 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~~l~s~s  198 (325)
                      ....|.++|.+++|+.+| ..+++|+.|+.+++||+.+           ..+..+..|.++|..+.|-+... ..|+|||
T Consensus        67 a~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S-----------~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGS  134 (347)
T KOG0647|consen   67 AQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLAS-----------GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGS  134 (347)
T ss_pred             hhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEccC-----------CCeeeeeecccceeEEEEecCCCcceeEecc
Confidence            456799999999999999 7999999999999999998           23566778999999999976543 3789999


Q ss_pred             CCCcEEEEeCCCCCCCCc------------------------------------------------c-------------
Q 020480          199 DDAQICLWDINAAPKNKS------------------------------------------------L-------------  217 (325)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~------------------------------------------------~-------------  217 (325)
                      .|.+|+.||.|.......                                                .             
T Consensus       135 WDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~a  214 (347)
T KOG0647|consen  135 WDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFA  214 (347)
T ss_pred             cccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceE
Confidence            999999999987521100                                                0             


Q ss_pred             ------------------cceEeeecCCc---------cEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee
Q 020480          218 ------------------EAMQIFKVHEG---------VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV  270 (325)
Q Consensus       218 ------------------~~~~~~~~~~~---------~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  270 (325)
                                        ..-.+|++|..         .|++|+|+|.. ..|+++|.||+..+||-.....   +.+.+
T Consensus       215 lGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~k---Lk~s~  290 (347)
T KOG0647|consen  215 LGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDARTK---LKTSE  290 (347)
T ss_pred             eeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhhh---hhccC
Confidence                              01123455552         47789999986 6899999999999999887764   77888


Q ss_pred             ccCCCeeEEEeCCCCCc
Q 020480          271 AHQSEVGVSILNASFRL  287 (325)
Q Consensus       271 ~h~~~v~~i~~~p~~~~  287 (325)
                      .|..+|++.+|+.+|.+
T Consensus       291 ~~~qpItcc~fn~~G~i  307 (347)
T KOG0647|consen  291 THPQPITCCSFNRNGSI  307 (347)
T ss_pred             cCCCccceeEecCCCCE
Confidence            89999999999999996

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.81  E-value=9.2e-19  Score=162.34  Aligned_cols=172  Identities=19%  Similarity=0.228  Sum_probs=143.8

Q ss_pred             cCCCeeEEEecCCCCcEEEEEe--cCCeEEEEeCCCCCCCCCCC--CCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          124 HDGEVNRARYMPQNPFLIATKT--VSAEVYVFDYSKHPSKPPLD--GACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~--~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      +...|.++..+|++ ..+|+|+  .||.+++|+...........  .-...+..+..|.+.|.++.|+|+|. +||+|+.
T Consensus        12 ~~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~-~lAsGSD   89 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS-YLASGSD   89 (942)
T ss_pred             CCeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC-eEeeccC
Confidence            35679999999999 7999999  89999999986543221111  12355677889999999999999999 8999999


Q ss_pred             CCcEEEEeCCCCC------------CCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCee
Q 020480          200 DAQICLWDINAAP------------KNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ  267 (325)
Q Consensus       200 dg~i~iwd~~~~~------------~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  267 (325)
                      |+.|.||......            .....+++..+.+|.+.|.+++|+|++ .++|+++.|++|.||+.++.+   .+.
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~---~~~  165 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFE---LLK  165 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccce---eee
Confidence            9999999987310            112334677889999999999999986 799999999999999999996   489


Q ss_pred             EeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          268 SVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       268 ~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      .+.+|.+.|-.+.|+|-|++  +-++|.++++|...
T Consensus       166 vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~  201 (942)
T KOG0973|consen  166 VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS  201 (942)
T ss_pred             eeecccccccceEECCccCeeeeecCCceEEEEEcc
Confidence            99999999999999999997  77999999999843

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=3.6e-18  Score=154.66  Aligned_cols=163  Identities=12%  Similarity=0.121  Sum_probs=131.4

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ..+|.+.|..+.|+..+  +|++++.|.+|+||++..          ...+..| .|.+.|+|++|+|...++|++|+.|
T Consensus       365 f~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~----------~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD  431 (712)
T KOG0283|consen  365 FKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGR----------KECLKVF-SHNDFVTCVAFNPVDDRYFISGSLD  431 (712)
T ss_pred             hhccchhheecccccCC--eeEeccccccEEeecCCC----------cceeeEE-ecCCeeEEEEecccCCCcEeecccc
Confidence            45799999999999965  899999999999999976          3335555 5999999999999988899999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee---------c
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV---------A  271 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~  271 (325)
                      |.|+||++...+       +..+..-..-|++++|.|+| ...+.|+.+|.+++|+.+..+.   .....         .
T Consensus       432 ~KvRiWsI~d~~-------Vv~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~---~~~~~I~~~~~Kk~~  500 (712)
T KOG0283|consen  432 GKVRLWSISDKK-------VVDWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKL---VSDFHIRLHNKKKKQ  500 (712)
T ss_pred             cceEEeecCcCe-------eEeehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeE---EEeeeEeeccCcccc
Confidence            999999998642       33444445789999999998 5888999999999999988763   22221         1


Q ss_pred             cCCCeeEEEeCCCCC---ccCCCCceEEeeec--ceeeeccC
Q 020480          272 HQSEVGVSILNASFR---LSHEDTCTCTHRHS--RYLLYKFP  308 (325)
Q Consensus       272 h~~~v~~i~~~p~~~---~~~~~d~~~~~~~~--~~~~~~~~  308 (325)
                      |. .|+.+.|.|...   +..+.|..+++++.  ..++.+|.
T Consensus       501 ~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK  541 (712)
T KOG0283|consen  501 GK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK  541 (712)
T ss_pred             Cc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc
Confidence            33 799999997543   58889999999998  55555543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.80  E-value=4.7e-19  Score=144.33  Aligned_cols=155  Identities=17%  Similarity=0.234  Sum_probs=130.1

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeCC
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      .-+..+|.|+.|+.+. .++|+|+.||.|++|.+.+        +.+  ++.+. .|+..|+++.|+.++. .+++++.|
T Consensus       260 MMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~t--------G~C--lRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD  327 (508)
T KOG0275|consen  260 MMMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIET--------GQC--LRRFDRAHTKGVTCLSFSRDNS-QILSASFD  327 (508)
T ss_pred             eecccceEEEeecccH-HHhhccCcCCcEEEEEEec--------chH--HHHhhhhhccCeeEEEEccCcc-hhhccccc
Confidence            4578999999999988 7999999999999999988        433  55665 8999999999999999 79999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee--ccCCCeeE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV--AHQSEVGV  278 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~  278 (325)
                      .++++--++.+      +++..+.+|++.|+...|.++| +.+++++.||+|++|+..+.+|   +.+++  +...+|++
T Consensus       328 ~tvRiHGlKSG------K~LKEfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC---~~Tfk~~~~d~~vns  397 (508)
T KOG0275|consen  328 QTVRIHGLKSG------KCLKEFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTEC---LSTFKPLGTDYPVNS  397 (508)
T ss_pred             ceEEEeccccc------hhHHHhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhh---hhhccCCCCccccee
Confidence            99999999988      6788999999999999999998 7888999999999999999987   55553  23457788


Q ss_pred             EEeCCCCC---ccCCCCceEEee
Q 020480          279 SILNASFR---LSHEDTCTCTHR  298 (325)
Q Consensus       279 i~~~p~~~---~~~~~d~~~~~~  298 (325)
                      +..-|...   +.+....++.+-
T Consensus       398 v~~~PKnpeh~iVCNrsntv~im  420 (508)
T KOG0275|consen  398 VILLPKNPEHFIVCNRSNTVYIM  420 (508)
T ss_pred             EEEcCCCCceEEEEcCCCeEEEE
Confidence            77776544   355555565554

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=9.3e-19  Score=137.34  Aligned_cols=171  Identities=17%  Similarity=0.166  Sum_probs=137.9

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEec-CCCCCeEEEEeCCC
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS-KFKEGHLLSGSDDA  201 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-p~~~~~l~s~s~dg  201 (325)
                      .|...|..+...--| .+||+|+.|++|+|+..+..       +..+.+..+.||.++|+.++|. |.-.++|++++.||
T Consensus         9 ~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n-------~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDg   80 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNN-------GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDG   80 (299)
T ss_pred             hhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCC-------CCceeeeEecCCCCCeeEEeecccccCcEeeEeecCc
Confidence            577778777777767 79999999999999999872       2236688999999999999995 44334999999999


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCC-cEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE-YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      .|.||.-..+.-    ........|...|++++|.|.+. ..|++++.||.|.|.+.+.......-.....|.-.|++++
T Consensus        81 kVIiWke~~g~w----~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs  156 (299)
T KOG1332|consen   81 KVIIWKEENGRW----TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS  156 (299)
T ss_pred             eEEEEecCCCch----hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence            999999887743    34556788999999999999643 5778999999999999998743334455578999999999


Q ss_pred             eCCC---C-------------CccCCCCceEEeeecceeee
Q 020480          281 LNAS---F-------------RLSHEDTCTCTHRHSRYLLY  305 (325)
Q Consensus       281 ~~p~---~-------------~~~~~~d~~~~~~~~~~~~~  305 (325)
                      |.|.   |             ..+|+.|..+++|....-.|
T Consensus       157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w  197 (299)
T KOG1332|consen  157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW  197 (299)
T ss_pred             ecCcCCCccccccCcccccceeeccCCccceeeeecCCcch
Confidence            9986   4             13899999999998765333

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.79  E-value=7.6e-19  Score=155.68  Aligned_cols=218  Identities=14%  Similarity=0.199  Sum_probs=163.9

Q ss_pred             hhhhHHHHhhhHhcChhHHH-HhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCC
Q 020480           14 ERLINEEYKIWKKNTPFLYD-LVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDS   92 (325)
Q Consensus        14 ~~~~~~~~~iw~~~~~~~y~-~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~   92 (325)
                      ....++++|+|++...+... ........|-..++.+.+ .+.        .+++.|....     .|.++...      
T Consensus        30 s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~~~--------~~l~~g~~D~-----~i~v~~~~------   89 (745)
T KOG0301|consen   30 SGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-SDK--------GRLVVGGMDT-----TIIVFKLS------   89 (745)
T ss_pred             ecCCCCceeeeeccCcccccceecccCcceeeccceecc-ccC--------cceEeecccc-----eEEEEecC------
Confidence            34467899999996655443 222223333233355554 211        3566666533     45555442      


Q ss_pred             CcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE
Q 020480           93 ENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL  172 (325)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~  172 (325)
                                           ....+....+|++.|.++....++  .+++|+.|.++++|....          .  ..
T Consensus        90 ---------------------~~~P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~----------l--~~  134 (745)
T KOG0301|consen   90 ---------------------QAEPLYTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGE----------L--VY  134 (745)
T ss_pred             ---------------------CCCchhhhhccccceeeeecCCcC--ceEecccccceEEecchh----------h--hc
Confidence                                 112334567899999999988877  399999999999998765          2  33


Q ss_pred             EEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcE
Q 020480          173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL  252 (325)
Q Consensus       173 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i  252 (325)
                      .+.+|+..|+++..-|.+  .++||+.|.+|++|.-.        ..+++|.+|+..|..+++-+++  .|+||+.||.|
T Consensus       135 ~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~--------~~l~tf~gHtD~VRgL~vl~~~--~flScsNDg~I  202 (745)
T KOG0301|consen  135 SLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGG--------TLLKTFSGHTDCVRGLAVLDDS--HFLSCSNDGSI  202 (745)
T ss_pred             ccCCcchheeeeeecCCC--cEEeccCcceeeeccCC--------chhhhhccchhheeeeEEecCC--CeEeecCCceE
Confidence            488999999999999987  59999999999999875        3578899999999999999864  57899999999


Q ss_pred             EEEEccCCCCCCCeeEeeccCCCeeEEEeCC-CCCc-cCCCCceEEeeecce
Q 020480          253 LIWDLRTPSVSKPVQSVVAHQSEVGVSILNA-SFRL-SHEDTCTCTHRHSRY  302 (325)
Q Consensus       253 ~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p-~~~~-~~~~d~~~~~~~~~~  302 (325)
                      ++|++ ++.+   +....+|+.-|.+++..+ ++.+ ++|.|+++++|+...
T Consensus       203 r~w~~-~ge~---l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e  250 (745)
T KOG0301|consen  203 RLWDL-DGEV---LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE  250 (745)
T ss_pred             EEEec-cCce---eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc
Confidence            99999 5554   889999999999999544 4444 999999999998764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=2.9e-18  Score=151.07  Aligned_cols=172  Identities=17%  Similarity=0.217  Sum_probs=140.2

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ...|...|.|+++-..+..++|+||-|+.|.+||++......-..........+. |+...|++++-++.+. .+++|+.
T Consensus       113 ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgt  191 (735)
T KOG0308|consen  113 IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGT  191 (735)
T ss_pred             hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEEecCc
Confidence            3459999999999444447999999999999999987432110001112233344 8899999999999997 8999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS  279 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i  279 (325)
                      .+.+++||.++..+      +..+.+|+..|.++..+++| +.+++++.||+|++||++..++   +.++..|+..|+++
T Consensus       192 ek~lr~wDprt~~k------imkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQrC---l~T~~vH~e~VWaL  261 (735)
T KOG0308|consen  192 EKDLRLWDPRTCKK------IMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQRC---LATYIVHKEGVWAL  261 (735)
T ss_pred             ccceEEeccccccc------eeeeeccccceEEEEEcCCC-CeEeecCCCceEEeeeccccce---eeeEEeccCceEEE
Confidence            99999999999854      56678999999999999998 6888999999999999999997   88899999999999


Q ss_pred             EeCCCCC--ccCCCCceEEeeeccee
Q 020480          280 ILNASFR--LSHEDTCTCTHRHSRYL  303 (325)
Q Consensus       280 ~~~p~~~--~~~~~d~~~~~~~~~~~  303 (325)
                      ..+|+-.  ++|+.|+.+..=+++..
T Consensus       262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  262 QSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eeCCCcceEEecCCCCcEEecccCCc
Confidence            9998765  48888988887666654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.79  E-value=4.8e-18  Score=136.82  Aligned_cols=162  Identities=17%  Similarity=0.258  Sum_probs=131.7

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCC--CCeEEEEeC
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK--EGHLLSGSD  199 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~--~~~l~s~s~  199 (325)
                      ..|.-.|..+.|-|.+..+|.+++.|.+++|||.++          .+....|. ..+.|++-+|+|-.  ..++++|..
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT----------lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr  166 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT----------LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTR  166 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeeccc----------ceeeEEee-cCceeehhhcChhhhcceEEEEecC
Confidence            358889999999998777999999999999999987          22222232 34578888888753  237888899


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC-C-----------CCCee
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS-V-----------SKPVQ  267 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~-----------~~~~~  267 (325)
                      |-.|++.|+..+      .+.+++.+|...|.++.|+|....+|++|+.||.|++||+|... +           ...++
T Consensus       167 ~~~VrLCDi~SG------s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~  240 (397)
T KOG4283|consen  167 DVQVRLCDIASG------SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK  240 (397)
T ss_pred             CCcEEEEeccCC------cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc
Confidence            999999999998      56888999999999999999988999999999999999999652 1           01122


Q ss_pred             EeeccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480          268 SVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       268 ~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                      .-.+|.+.|+.++|..+|+.  +++.|..+++|+.
T Consensus       241 ~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~  275 (397)
T KOG4283|consen  241 TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM  275 (397)
T ss_pred             ccccccceeeeeeecccchhhhhccCccceEEeec
Confidence            23567889999999999984  8889999999975

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=1.1e-17  Score=135.73  Aligned_cols=176  Identities=14%  Similarity=0.163  Sum_probs=134.9

Q ss_pred             EEEEEeccCCCeeEEEecCCC-CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEE
Q 020480          117 QIIQQINHDGEVNRARYMPQN-PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL  195 (325)
Q Consensus       117 ~~~~~~~h~~~v~~v~~~~~~-~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~  195 (325)
                      +.-....|.+.|+++.|.+.- ...|.+|+.||.|.+|+...          +..+.++++|.+.|+.++.+|.+. +.+
T Consensus        75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~----------W~~~~slK~H~~~Vt~lsiHPS~K-LAL  143 (362)
T KOG0294|consen   75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS----------WELLKSLKAHKGQVTDLSIHPSGK-LAL  143 (362)
T ss_pred             hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC----------eEEeeeecccccccceeEecCCCc-eEE
Confidence            344467899999999999864 13688999999999999977          677889999999999999999999 899


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccc-----------------------eEeee--------c--CCccEEEEEeecCCCcE
Q 020480          196 SGSDDAQICLWDINAAPKNKSLEA-----------------------MQIFK--------V--HEGVVEDVAWHLRHEYL  242 (325)
Q Consensus       196 s~s~dg~i~iwd~~~~~~~~~~~~-----------------------~~~~~--------~--~~~~v~~v~~~p~~~~~  242 (325)
                      +.+.|+.+++||+-.++.......                       +..++        .  ....+.++.|-  .+..
T Consensus       144 sVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l--~~~~  221 (362)
T KOG0294|consen  144 SVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL--DGSE  221 (362)
T ss_pred             EEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec--CCce
Confidence            999999999999987754311100                       00000        0  01224444443  2468


Q ss_pred             EEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEe--CCCCCc--cCCCCceEEeeecceeeeccC
Q 020480          243 FGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL--NASFRL--SHEDTCTCTHRHSRYLLYKFP  308 (325)
Q Consensus       243 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~--~p~~~~--~~~~d~~~~~~~~~~~~~~~~  308 (325)
                      +++|+.++.|++||.....   +...+.+|...|-++.+  +|.+.+  ++|.||.+++|++++-.-..|
T Consensus       222 L~vG~d~~~i~~~D~ds~~---~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~  288 (362)
T KOG0294|consen  222 LLVGGDNEWISLKDTDSDT---PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRP  288 (362)
T ss_pred             EEEecCCceEEEeccCCCc---cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCc
Confidence            8899999999999999865   58899999999999985  455554  899999999999887644443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.79  E-value=5.7e-18  Score=136.73  Aligned_cols=157  Identities=18%  Similarity=0.282  Sum_probs=120.6

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      -...|.+++|+|....++++|+.||+|++|++...       +...+ .....|.++|.+++|+.+|. .+++|+.|+.+
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-------g~~~~-ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~   96 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-------GQLVP-KAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQA   96 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecC-------Ccccc-hhhhccCCCeEEEEEccCCc-eEEeeccCCce
Confidence            45789999999966578889999999999999862       22233 34567999999999999998 89999999999


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCC-CcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeC
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN  282 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~  282 (325)
                      ++||+.+++       ...+..|..+|..+.|-+.. ..+|++|+.|.+|++||+|...   ++.++. ..+.+.++..-
T Consensus        97 k~wDL~S~Q-------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~---pv~t~~-LPeRvYa~Dv~  165 (347)
T KOG0647|consen   97 KLWDLASGQ-------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN---PVATLQ-LPERVYAADVL  165 (347)
T ss_pred             EEEEccCCC-------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC---eeeeee-ccceeeehhcc
Confidence            999999873       55678899999999998743 2489999999999999999877   466654 34555555444


Q ss_pred             CCCCccCCCCceEEeeec
Q 020480          283 ASFRLSHEDTCTCTHRHS  300 (325)
Q Consensus       283 p~~~~~~~~d~~~~~~~~  300 (325)
                      ..-...+..+..+.++++
T Consensus       166 ~pm~vVata~r~i~vynL  183 (347)
T KOG0647|consen  166 YPMAVVATAERHIAVYNL  183 (347)
T ss_pred             CceeEEEecCCcEEEEEc
Confidence            333334444556666655

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=5.6e-18  Score=141.27  Aligned_cols=169  Identities=20%  Similarity=0.290  Sum_probs=136.0

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      .-+|.++|..++|+|.+.+.||+|++|.+|.||.+.......   .-..|+..+.+|+..|--++|+|.-.+.|+|++.|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~---~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR---DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCccccc---CcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            358999999999999998999999999999999998743322   12367788999999999999999999899999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC-CeeEE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS-EVGVS  279 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~i  279 (325)
                      ..|.+|++.++..      +-++. |...|++++|+.+| .+|++.+.|..|||||.|+++.   +..-.+|.+ .-..+
T Consensus       154 n~v~iWnv~tgea------li~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~---v~e~~~heG~k~~Ra  222 (472)
T KOG0303|consen  154 NTVSIWNVGTGEA------LITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTV---VSEGVAHEGAKPARA  222 (472)
T ss_pred             ceEEEEeccCCce------eeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcE---eeecccccCCCccee
Confidence            9999999999843      44455 99999999999998 6999999999999999999984   666566754 23445


Q ss_pred             EeCCCCCc-----cCCCCceEEeeeccee
Q 020480          280 ILNASFRL-----SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       280 ~~~p~~~~-----~~~~d~~~~~~~~~~~  303 (325)
                      .|-.+|.+     +.-.+..+-+|+-..+
T Consensus       223 ifl~~g~i~tTGfsr~seRq~aLwdp~nl  251 (472)
T KOG0303|consen  223 IFLASGKIFTTGFSRMSERQIALWDPNNL  251 (472)
T ss_pred             EEeccCceeeeccccccccceeccCcccc
Confidence            67666664     3334556666765443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.78  E-value=1.8e-18  Score=142.78  Aligned_cols=248  Identities=11%  Similarity=0.131  Sum_probs=167.3

Q ss_pred             hhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480           14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE   93 (325)
Q Consensus        14 ~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~   93 (325)
                      +..-|.++|||++....+...+..|...  +.-+.+....           .+-+|.      ++.+..|.+..|.....
T Consensus        84 SGs~DG~VkiWnlsqR~~~~~f~AH~G~--V~Gi~v~~~~-----------~~tvgd------DKtvK~wk~~~~p~~ti  144 (433)
T KOG0268|consen   84 SGSCDGEVKIWNLSQRECIRTFKAHEGL--VRGICVTQTS-----------FFTVGD------DKTVKQWKIDGPPLHTI  144 (433)
T ss_pred             ccccCceEEEEehhhhhhhheeecccCc--eeeEEecccc-----------eEEecC------CcceeeeeccCCcceee
Confidence            4456789999999999998888888755  3333333211           122221      23444554443321111


Q ss_pred             cc------------cCCCCcccCCCCCCCCCCCceEEEEEec-cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCC
Q 020480           94 ND------------ARHYDDDRSDFGGFGCANGKVQIIQQIN-HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPS  160 (325)
Q Consensus        94 ~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~  160 (325)
                      .-            .+.+-.....+..|+....  ..++.+. -...|.++.|+|-...+|++|+.|+.|.+||++.   
T Consensus       145 lg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~--~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~---  219 (433)
T KOG0268|consen  145 LGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRD--NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQ---  219 (433)
T ss_pred             eccccccccccccccccccccCceeeecccccC--CccceeecCCCceeEEecCCCcchheeeeccCCceEEEeccc---
Confidence            11            1111111122223322111  1112233 2357899999999888999999999999999998   


Q ss_pred             CCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCC
Q 020480          161 KPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE  240 (325)
Q Consensus       161 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  240 (325)
                             ..|+..+. -+.....++|+|.. ..|++|+.|..++.||++...     .++..+.+|.+.|.++.|+|.| 
T Consensus       220 -------~~Pl~KVi-~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~-----~p~~v~~dhvsAV~dVdfsptG-  284 (433)
T KOG0268|consen  220 -------ASPLKKVI-LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLS-----RPLNVHKDHVSAVMDVDFSPTG-  284 (433)
T ss_pred             -------CCccceee-eeccccceecCccc-cceeeccccccceehhhhhhc-----ccchhhcccceeEEEeccCCCc-
Confidence                   34454432 23345689999954 479999999999999999765     4678889999999999999998 


Q ss_pred             cEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       241 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      .-|++||.|.+||||..+.+......++  .-...|.||.|+.+.++  +||+|+.+++|..+-
T Consensus       285 ~EfvsgsyDksIRIf~~~~~~SRdiYht--kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  285 QEFVSGSYDKSIRIFPVNHGHSRDIYHT--KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             chhccccccceEEEeecCCCcchhhhhH--hhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence            5899999999999999998763111111  12356999999999985  999999999997543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=3.9e-18  Score=150.27  Aligned_cols=168  Identities=21%  Similarity=0.201  Sum_probs=140.5

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEe-cCCCCCeEEEEeCC
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSW-SKFKEGHLLSGSDD  200 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~p~~~~~l~s~s~d  200 (325)
                      -.|...|+.+..+..+ +.|++++.|-+|++|+...        +......++..|.+.|.+++. .++.. ++|||+.|
T Consensus        70 e~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~--------~~~~c~stir~H~DYVkcla~~ak~~~-lvaSgGLD  139 (735)
T KOG0308|consen   70 EHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHK--------DNTFCMSTIRTHKDYVKCLAYIAKNNE-LVASGGLD  139 (735)
T ss_pred             hhhHhHHhhHHhhcCC-CceEEecCCceEEEeeccc--------CcchhHhhhhcccchheeeeecccCce-eEEecCCC
Confidence            3589999999999888 6899999999999999987        212335567889999999999 66665 99999999


Q ss_pred             CcEEEEeCCCCCC-----CCcccceEeee-cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC
Q 020480          201 AQICLWDINAAPK-----NKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS  274 (325)
Q Consensus       201 g~i~iwd~~~~~~-----~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~  274 (325)
                      +.|.+||+..+..     ... .....+. ++...|++++.++.+ ..|++|+..+.+++||.|+.+.   +..+.+|+.
T Consensus       140 ~~IflWDin~~~~~l~~s~n~-~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~k---imkLrGHTd  214 (735)
T KOG0308|consen  140 RKIFLWDINTGTATLVASFNN-VTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKK---IMKLRGHTD  214 (735)
T ss_pred             ccEEEEEccCcchhhhhhccc-cccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccc---eeeeecccc
Confidence            9999999997732     011 1122223 788899999999987 7999999999999999999985   888899999


Q ss_pred             CeeEEEeCCCCC--ccCCCCceEEeeecceee
Q 020480          275 EVGVSILNASFR--LSHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       275 ~v~~i~~~p~~~--~~~~~d~~~~~~~~~~~~  304 (325)
                      -|.++..+++|.  +++|.|+++++|+++...
T Consensus       215 NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr  246 (735)
T KOG0308|consen  215 NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR  246 (735)
T ss_pred             ceEEEEEcCCCCeEeecCCCceEEeeeccccc
Confidence            999999999997  599999999999987654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=3e-18  Score=159.80  Aligned_cols=173  Identities=22%  Similarity=0.317  Sum_probs=138.7

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      .-.|.+.|..+.|++..+++||+|+.||.|.|||+.......      .+-  -..-.+.|.+++|+..-...|++++.+
T Consensus       112 ~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~------~~~--~~~~~~eI~~lsWNrkvqhILAS~s~s  183 (1049)
T KOG0307|consen  112 KSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPF------TPG--SQAPPSEIKCLSWNRKVSHILASGSPS  183 (1049)
T ss_pred             hcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCC------CCC--CCCCcccceEeccchhhhHHhhccCCC
Confidence            446999999999999987899999999999999998722111      111  122457899999999888899999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCC--ccEEEEEeecCCCcEEEEEecCC---cEEEEEccCCCCCCCeeEeeccCCC
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHE--GVVEDVAWHLRHEYLFGSVGDDQ---YLLIWDLRTPSVSKPVQSVVAHQSE  275 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~  275 (325)
                      |.+.|||+|..+      ++-.+..+.  ..+..++|||++.+.+++++.|.   .|.+||+|....  |++.+.+|...
T Consensus       184 g~~~iWDlr~~~------pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass--P~k~~~~H~~G  255 (1049)
T KOG0307|consen  184 GRAVIWDLRKKK------PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS--PLKILEGHQRG  255 (1049)
T ss_pred             CCceeccccCCC------cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC--chhhhcccccc
Confidence            999999999763      233333333  35788999999988888888664   599999998776  78999999999


Q ss_pred             eeEEEeCCCC-C--ccCCCCceEEeeecce--eeeccCe
Q 020480          276 VGVSILNASF-R--LSHEDTCTCTHRHSRY--LLYKFPF  309 (325)
Q Consensus       276 v~~i~~~p~~-~--~~~~~d~~~~~~~~~~--~~~~~~~  309 (325)
                      |.++.|++.+ +  ++++.|+.+.+|+...  +...+|.
T Consensus       256 ilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~  294 (1049)
T KOG0307|consen  256 ILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA  294 (1049)
T ss_pred             eeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence            9999999976 3  4899999999998877  5566654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.76  E-value=4e-17  Score=131.14  Aligned_cols=169  Identities=19%  Similarity=0.345  Sum_probs=129.5

Q ss_pred             eEEEEEec--cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE-----ecCCCceEEEEecC
Q 020480          116 VQIIQQIN--HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-----RGHSTEGYGLSWSK  188 (325)
Q Consensus       116 ~~~~~~~~--h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~~p  188 (325)
                      ++.+..+.  +-+.|.|+.|.|++ ..+++- .|..|.+|++.+...         .+..+     ..|....++-+|+|
T Consensus       112 lE~v~~Ldteavg~i~cvew~Pns-~klasm-~dn~i~l~~l~ess~---------~vaev~ss~s~e~~~~ftsg~Wsp  180 (370)
T KOG1007|consen  112 LECVASLDTEAVGKINCVEWEPNS-DKLASM-DDNNIVLWSLDESSK---------IVAEVLSSESAEMRHSFTSGAWSP  180 (370)
T ss_pred             hhHhhcCCHHHhCceeeEEEcCCC-CeeEEe-ccCceEEEEcccCcc---------hheeecccccccccceecccccCC
Confidence            34443443  56799999999977 566664 488999999987221         01111     13566788999999


Q ss_pred             CCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeE
Q 020480          189 FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS  268 (325)
Q Consensus       189 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  268 (325)
                      ......+....|+++..||+|+..+..     ..-.+|...|..+.|+|+.+.+|++|++||.|+|||.|..+.  |+..
T Consensus       181 HHdgnqv~tt~d~tl~~~D~RT~~~~~-----sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~e  253 (370)
T KOG1007|consen  181 HHDGNQVATTSDSTLQFWDLRTMKKNN-----SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQE  253 (370)
T ss_pred             CCccceEEEeCCCcEEEEEccchhhhc-----chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccc
Confidence            554445556678999999999875432     223678889999999999999999999999999999999886  8999


Q ss_pred             eeccCCCeeEEEeCCCCC---ccCCCCceEEeeecce
Q 020480          269 VVAHQSEVGVSILNASFR---LSHEDTCTCTHRHSRY  302 (325)
Q Consensus       269 ~~~h~~~v~~i~~~p~~~---~~~~~d~~~~~~~~~~  302 (325)
                      +.+|.-.|++|.|+|.-.   +++|.|..+.++....
T Consensus       254 l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  254 LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             cCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence            999999999999999433   4899999988875433

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=1.1e-16  Score=130.03  Aligned_cols=155  Identities=23%  Similarity=0.267  Sum_probs=120.1

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCC-CeEEEEeC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE-GHLLSGSD  199 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~~l~s~s~  199 (325)
                      ...|.+.|++++.+.   .++|+|+.|-+|+|||++.          ...+..+..|.+.|+++.|.+.-. ..|++|+.
T Consensus        39 ~~aH~~sitavAVs~---~~~aSGssDetI~IYDm~k----------~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd  105 (362)
T KOG0294|consen   39 FSAHAGSITALAVSG---PYVASGSSDETIHIYDMRK----------RKQLGILLSHAGSITALKFYPPLSKSHLLSGSD  105 (362)
T ss_pred             ccccccceeEEEecc---eeEeccCCCCcEEEEeccc----------hhhhcceeccccceEEEEecCCcchhheeeecC
Confidence            346999999999975   6999999999999999987          444677888999999999987642 36999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS  279 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i  279 (325)
                      ||.|.+|+...-      .++..+++|...|+.++.||.+ .+.++.+.|+.+++||+-.++.   ...+. -....+.|
T Consensus       106 DG~i~iw~~~~W------~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~---a~v~~-L~~~at~v  174 (362)
T KOG0294|consen  106 DGHIIIWRVGSW------ELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRV---AFVLN-LKNKATLV  174 (362)
T ss_pred             CCcEEEEEcCCe------EEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCcc---ceeec-cCCcceee
Confidence            999999999865      5688999999999999999997 5888999999999999988874   12111 12222337


Q ss_pred             EeCCCCC-ccCCCCceEEeee
Q 020480          280 ILNASFR-LSHEDTCTCTHRH  299 (325)
Q Consensus       280 ~~~p~~~-~~~~~d~~~~~~~  299 (325)
                      .|+|.|. +..+....+-+|+
T Consensus       175 ~w~~~Gd~F~v~~~~~i~i~q  195 (362)
T KOG0294|consen  175 SWSPQGDHFVVSGRNKIDIYQ  195 (362)
T ss_pred             EEcCCCCEEEEEeccEEEEEe
Confidence            7777776 3222333444443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=5.8e-16  Score=120.55  Aligned_cols=160  Identities=17%  Similarity=0.130  Sum_probs=128.9

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe----c---CCCceEEEEecCCCCCe
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR----G---HSTEGYGLSWSKFKEGH  193 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~----~---h~~~v~~l~~~p~~~~~  193 (325)
                      ..+|++.|.++-- -.+ .++++|+.|.+|++||++-.          ..+.++.    +   .++.|.+++..|.|. +
T Consensus       179 ~sghtghilalys-wn~-~m~~sgsqdktirfwdlrv~----------~~v~~l~~~~~~~glessavaav~vdpsgr-l  245 (350)
T KOG0641|consen  179 LSGHTGHILALYS-WNG-AMFASGSQDKTIRFWDLRVN----------SCVNTLDNDFHDGGLESSAVAAVAVDPSGR-L  245 (350)
T ss_pred             ecCCcccEEEEEE-ecC-cEEEccCCCceEEEEeeecc----------ceeeeccCcccCCCcccceeEEEEECCCcc-e
Confidence            3468888877642 224 69999999999999999862          1122221    1   236799999999999 9


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC-CCCeeEeecc
Q 020480          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-SKPVQSVVAH  272 (325)
Q Consensus       194 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h  272 (325)
                      |++|..|.++.+||++.+      ..++.+..|+..|.++.|+|. ..++++|+.|..|++-|+...-. .-++.....|
T Consensus       246 l~sg~~dssc~lydirg~------r~iq~f~phsadir~vrfsp~-a~yllt~syd~~ikltdlqgdla~el~~~vv~eh  318 (350)
T KOG0641|consen  246 LASGHADSSCMLYDIRGG------RMIQRFHPHSADIRCVRFSPG-AHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH  318 (350)
T ss_pred             eeeccCCCceEEEEeeCC------ceeeeeCCCccceeEEEeCCC-ceEEEEecccceEEEeecccchhhcCceEEEEec
Confidence            999999999999999988      568889999999999999996 58999999999999999985421 1256666789


Q ss_pred             CCCeeEEEeCCCCC--ccCCCCceEEeeec
Q 020480          273 QSEVGVSILNASFR--LSHEDTCTCTHRHS  300 (325)
Q Consensus       273 ~~~v~~i~~~p~~~--~~~~~d~~~~~~~~  300 (325)
                      +..+-.+.|+|+.-  ++.+.|.++.+|-+
T Consensus       319 kdk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  319 KDKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             cCceEEEEecCccceeeeccCcceEEEecc
Confidence            99999999999764  48889999999964

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.76  E-value=4.5e-17  Score=130.98  Aligned_cols=210  Identities=18%  Similarity=0.305  Sum_probs=153.5

Q ss_pred             cCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceE
Q 020480           38 HALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQ  117 (325)
Q Consensus        38 ~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (325)
                      +..++|...+.|.|+....    +  ..++..+      ..++.+|++..-......                  ...+.
T Consensus        93 fd~~YP~tK~~wiPd~~g~----~--pdlLATs------~D~LRlWri~~ee~~~~~------------------~~~L~  142 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGV----Y--PDLLATS------SDFLRLWRIGDEESRVEL------------------QSVLN  142 (364)
T ss_pred             CCCCCCccceEecCCcccc----C--cchhhcc------cCeEEEEeccCcCCceeh------------------hhhhc
Confidence            5678899999999987532    1  1333222      248999988521000000                  01111


Q ss_pred             EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480          118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (325)
Q Consensus       118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  197 (325)
                      .-+...+..++++..|+.-.++++.+.+-|.+..|||+....       .......+..|..+|++++|...+...|+++
T Consensus       143 ~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~-------~~~vkTQLIAHDKEV~DIaf~~~s~~~FASv  215 (364)
T KOG0290|consen  143 NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV-------SGTVKTQLIAHDKEVYDIAFLKGSRDVFASV  215 (364)
T ss_pred             cCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc-------ccceeeEEEecCcceeEEEeccCccceEEEe
Confidence            112345778999999999888999999999999999998720       1222345779999999999999888899999


Q ss_pred             eCCCcEEEEeCCCCCCCCc------------------------------------------ccceEeeecCCccEEEEEe
Q 020480          198 SDDAQICLWDINAAPKNKS------------------------------------------LEAMQIFKVHEGVVEDVAW  235 (325)
Q Consensus       198 s~dg~i~iwd~~~~~~~~~------------------------------------------~~~~~~~~~~~~~v~~v~~  235 (325)
                      +.||++|+||+|....+..                                          -.++..+++|.+.|+.++|
T Consensus       216 gaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaW  295 (364)
T KOG0290|consen  216 GADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAW  295 (364)
T ss_pred             cCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEe
Confidence            9999999999987642200                                          0245567889999999999


Q ss_pred             ecCCCcEEEEEecCCcEEEEEccCCCC---CCCeeEeeccCCCeeEEEeCCCC
Q 020480          236 HLRHEYLFGSVGDDQYLLIWDLRTPSV---SKPVQSVVAHQSEVGVSILNASF  285 (325)
Q Consensus       236 ~p~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~h~~~v~~i~~~p~~  285 (325)
                      .|.....|++||+|....+||+.....   ..|+..+. -.+.|+.|.|++..
T Consensus       296 aPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~  347 (364)
T KOG0290|consen  296 APHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQ  347 (364)
T ss_pred             cCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccC
Confidence            999889999999999999999986542   23455544 46789999999754

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=8.9e-18  Score=140.82  Aligned_cols=197  Identities=17%  Similarity=0.311  Sum_probs=141.9

Q ss_pred             HHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEE----------------
Q 020480           18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLM----------------   81 (325)
Q Consensus        18 ~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----------------   81 (325)
                      +|-++.|+..++.+...+... +.....+++|.|++.          ++++|+...     .+.                
T Consensus       290 ~e~~~lwDv~tgd~~~~y~~~-~~~S~~sc~W~pDg~----------~~V~Gs~dr-----~i~~wdlDgn~~~~W~gvr  353 (519)
T KOG0293|consen  290 DEVLSLWDVDTGDLRHLYPSG-LGFSVSSCAWCPDGF----------RFVTGSPDR-----TIIMWDLDGNILGNWEGVR  353 (519)
T ss_pred             hHheeeccCCcchhhhhcccC-cCCCcceeEEccCCc----------eeEecCCCC-----cEEEecCCcchhhcccccc
Confidence            355899999999888555444 666788999999986          455555432     222                


Q ss_pred             ---EEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEE--------EEeccCCCeeEEEecCCCCcEEEEEecCCeE
Q 020480           82 ---LAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQII--------QQINHDGEVNRARYMPQNPFLIATKTVSAEV  150 (325)
Q Consensus        82 ---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v  150 (325)
                         ++++.+...+...-...             .++++.++        ..+....+|+++..+.++ +++.+--.+..+
T Consensus       354 ~~~v~dlait~Dgk~vl~v~-------------~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~-k~~LvnL~~qei  419 (519)
T KOG0293|consen  354 DPKVHDLAITYDGKYVLLVT-------------VDKKIRLYNREARVDRGLISEEQPITSFSISKDG-KLALVNLQDQEI  419 (519)
T ss_pred             cceeEEEEEcCCCcEEEEEe-------------cccceeeechhhhhhhccccccCceeEEEEcCCC-cEEEEEcccCee
Confidence               23332221111100000             12222221        234566799999999998 688888889999


Q ss_pred             EEEeCCCCCCCCCCCCCCCCcEEEecCCCc--eEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCc
Q 020480          151 YVFDYSKHPSKPPLDGACSPDLRLRGHSTE--GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG  228 (325)
Q Consensus       151 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  228 (325)
                      ++||+.+          ...+..+.||+..  +-.-+|.-....++++||.|+.|+||+.+.+      .++..+.+|..
T Consensus       420 ~LWDl~e----------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg------kll~~LsGHs~  483 (519)
T KOG0293|consen  420 HLWDLEE----------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG------KLLAVLSGHSK  483 (519)
T ss_pred             EEeecch----------hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC------ceeEeecCCcc
Confidence            9999987          4556778888754  3344565555459999999999999999988      67899999999


Q ss_pred             cEEEEEeecCCCcEEEEEecCCcEEEEEccCC
Q 020480          229 VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP  260 (325)
Q Consensus       229 ~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~  260 (325)
                      .|++|+|+|..+..+|+||+||+||||-....
T Consensus       484 ~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  484 TVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             eeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            99999999999999999999999999987543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.75  E-value=1.5e-17  Score=137.34  Aligned_cols=169  Identities=15%  Similarity=0.132  Sum_probs=130.7

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC----------------------------CCCCCCCc
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP----------------------------LDGACSPD  171 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~----------------------------~~~~~~~~  171 (325)
                      ....|.|.|..+++..   ..+++++.|.+|+.|.+...+....                            ......|+
T Consensus       104 ~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv  180 (433)
T KOG0268|consen  104 TFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPV  180 (433)
T ss_pred             eeecccCceeeEEecc---cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCcc
Confidence            4557888888888877   3577778888888887543211000                            01123455


Q ss_pred             EEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc
Q 020480          172 LRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY  251 (325)
Q Consensus       172 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~  251 (325)
                      ..+.--.+.|.++.|+|.....|++|..|+.|.+||++.+..      ++... ..-.-+.++|+|. ...|++|+.|..
T Consensus       181 ~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P------l~KVi-~~mRTN~IswnPe-afnF~~a~ED~n  252 (433)
T KOG0268|consen  181 SSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP------LKKVI-LTMRTNTICWNPE-AFNFVAANEDHN  252 (433)
T ss_pred             ceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc------cceee-eeccccceecCcc-ccceeecccccc
Confidence            555555677899999999998999999999999999998843      33322 2344678999995 478889999999


Q ss_pred             EEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--ccCCCCceEEeeecc
Q 020480          252 LLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--LSHEDTCTCTHRHSR  301 (325)
Q Consensus       252 i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~~~~~d~~~~~~~~~  301 (325)
                      ++.||+|....  |+....+|.+.|.+|+|+|.|+  ++||.|.+++++..+
T Consensus       253 lY~~DmR~l~~--p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~  302 (433)
T KOG0268|consen  253 LYTYDMRNLSR--PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN  302 (433)
T ss_pred             ceehhhhhhcc--cchhhcccceeEEEeccCCCcchhccccccceEEEeecC
Confidence            99999999876  8999999999999999999998  499999999997653

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.75  E-value=1.2e-17  Score=139.90  Aligned_cols=216  Identities=14%  Similarity=0.119  Sum_probs=159.5

Q ss_pred             hhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480           14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE   93 (325)
Q Consensus        14 ~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~   93 (325)
                      ....|...++|+.+...+-..+..|+..  +.++.+.....          +++-|+.     +-.|+.|++.       
T Consensus       236 Aas~d~~~r~Wnvd~~r~~~TLsGHtdk--Vt~ak~~~~~~----------~vVsgs~-----DRtiK~WDl~-------  291 (459)
T KOG0288|consen  236 AASNDKNLRLWNVDSLRLRHTLSGHTDK--VTAAKFKLSHS----------RVVSGSA-----DRTIKLWDLQ-------  291 (459)
T ss_pred             eecCCCceeeeeccchhhhhhhcccccc--eeeehhhcccc----------ceeeccc-----cchhhhhhhh-------
Confidence            4446778899999999999999999888  77777777553          2333332     2345555553       


Q ss_pred             cccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE
Q 020480           94 NDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR  173 (325)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~  173 (325)
                                           +..+.+.+-..+.++.|..++   ..+++|-.|++|++||.+.          ..+...
T Consensus       292 ---------------------k~~C~kt~l~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs----------~~~~~s  337 (459)
T KOG0288|consen  292 ---------------------KAYCSKTVLPGSQCNDIVCSI---SDVISGHFDKKVRFWDIRS----------ADKTRS  337 (459)
T ss_pred             ---------------------hhheeccccccccccceEecc---eeeeecccccceEEEeccC----------CceeeE
Confidence                                 122333444456677777764   5799999999999999887          344556


Q ss_pred             EecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeec----CCccEEEEEeecCCCcEEEEEecC
Q 020480          174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV----HEGVVEDVAWHLRHEYLFGSVGDD  249 (325)
Q Consensus       174 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~v~~v~~~p~~~~~l~s~~~d  249 (325)
                      ...+. .|+++..++++. .+.+++.|.++.+.|+++...      .+.+.+    -.+..+.+.|+|++ .++|+||.|
T Consensus       338 v~~gg-~vtSl~ls~~g~-~lLsssRDdtl~viDlRt~eI------~~~~sA~g~k~asDwtrvvfSpd~-~YvaAGS~d  408 (459)
T KOG0288|consen  338 VPLGG-RVTSLDLSMDGL-ELLSSSRDDTLKVIDLRTKEI------RQTFSAEGFKCASDWTRVVFSPDG-SYVAAGSAD  408 (459)
T ss_pred             eecCc-ceeeEeeccCCe-EEeeecCCCceeeeecccccE------EEEeeccccccccccceeEECCCC-ceeeeccCC
Confidence            66554 899999999998 788889999999999998643      333332    12348889999987 699999999


Q ss_pred             CcEEEEEccCCCCCCCeeEeeccCC--CeeEEEeCCCCC--ccCCCCceEEeee
Q 020480          250 QYLLIWDLRTPSVSKPVQSVVAHQS--EVGVSILNASFR--LSHEDTCTCTHRH  299 (325)
Q Consensus       250 g~i~iwd~~~~~~~~~~~~~~~h~~--~v~~i~~~p~~~--~~~~~d~~~~~~~  299 (325)
                      |.|+||++.+++.   ...+....+  .|++++|+|.|.  ++++.+..+++|.
T Consensus       409 gsv~iW~v~tgKl---E~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  409 GSVYIWSVFTGKL---EKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             CcEEEEEccCceE---EEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            9999999999985   444433333  599999999887  4788888888883

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=4.3e-17  Score=132.49  Aligned_cols=166  Identities=17%  Similarity=0.199  Sum_probs=125.3

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ..+.+.. .+|+.|++.| .+||+|+.||.|.+||+.+          ..+.+.+.+|..+|++++|+++|. +|+|+|.
T Consensus        19 ~tld~~~-a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T----------~~iar~lsaH~~pi~sl~WS~dgr-~LltsS~   85 (405)
T KOG1273|consen   19 HTLDNPL-AECCQFSRWG-DYLAVGCANGRVVIYDFDT----------FRIARMLSAHVRPITSLCWSRDGR-KLLTSSR   85 (405)
T ss_pred             eeccCCc-cceEEeccCc-ceeeeeccCCcEEEEEccc----------cchhhhhhccccceeEEEecCCCC-EeeeecC
Confidence            3455555 7899999999 7999999999999999988          455677889999999999999999 9999999


Q ss_pred             CCcEEEEeCCCCCCCCccc-----------------ceE----------eeec--C-----------CccEEEEEeecCC
Q 020480          200 DAQICLWDINAAPKNKSLE-----------------AMQ----------IFKV--H-----------EGVVEDVAWHLRH  239 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~-----------------~~~----------~~~~--~-----------~~~v~~v~~~p~~  239 (325)
                      |..|.+||+..+...+.+.                 ++.          .+..  |           +....+..|.+.|
T Consensus        86 D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g  165 (405)
T KOG1273|consen   86 DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG  165 (405)
T ss_pred             CceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC
Confidence            9999999999875321110                 000          0000  0           0011122355555


Q ss_pred             CcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC-CCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ-SEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       240 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                       .++++|...|.+.++|..+.++   +..++... ..|..|.|+..|++  .-..|..+|.++++-
T Consensus       166 -~yIitGtsKGkllv~~a~t~e~---vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d  227 (405)
T KOG1273|consen  166 -KYIITGTSKGKLLVYDAETLEC---VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD  227 (405)
T ss_pred             -CEEEEecCcceEEEEecchhee---eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence             6899999999999999999885   66665444 78899999999985  566788999987763

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=1.4e-17  Score=140.74  Aligned_cols=168  Identities=20%  Similarity=0.209  Sum_probs=130.2

Q ss_pred             CeeEEEecCC------CCcEEEEEecCCeEEEEeCCCCCCCCC-----------CCCCCCCcEEEecCCCceEEEEecCC
Q 020480          127 EVNRARYMPQ------NPFLIATKTVSAEVYVFDYSKHPSKPP-----------LDGACSPDLRLRGHSTEGYGLSWSKF  189 (325)
Q Consensus       127 ~v~~v~~~~~------~~~~la~g~~dg~v~vwd~~~~~~~~~-----------~~~~~~~~~~~~~h~~~v~~l~~~p~  189 (325)
                      .-.|+.|...      .++++|.|+.+..|.|||+.-......           .....+.-..-.+|++.|.+|+|+..
T Consensus       175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~  254 (463)
T KOG0270|consen  175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN  254 (463)
T ss_pred             cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence            3345555543      147999999999999999865322211           00001111223479999999999999


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe
Q 020480          190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV  269 (325)
Q Consensus       190 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  269 (325)
                      -++.|+|||.|.+|++||+.++      .|..++..|+..|.++.|+|..+.+|++|+.|++|.+.|.|...+   ....
T Consensus       255 ~~nVLaSgsaD~TV~lWD~~~g------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~---s~~~  325 (463)
T KOG0270|consen  255 FRNVLASGSADKTVKLWDVDTG------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN---SGKE  325 (463)
T ss_pred             cceeEEecCCCceEEEEEcCCC------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc---cCce
Confidence            9889999999999999999998      567788889999999999999999999999999999999996543   2222


Q ss_pred             eccCCCeeEEEeCCCCCc---cCCCCceEEeeeccee
Q 020480          270 VAHQSEVGVSILNASFRL---SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       270 ~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~~~~  303 (325)
                      -...+.|-.++|+|....   .+.+||+++..|.|..
T Consensus       326 wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~  362 (463)
T KOG0270|consen  326 WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP  362 (463)
T ss_pred             EEeccceEEEEecCCCceeEEEecCCceEEeeecCCC
Confidence            224678999999998773   7789999999998876

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=3.1e-18  Score=152.56  Aligned_cols=159  Identities=21%  Similarity=0.265  Sum_probs=142.2

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ...|...|.++..-..+ ..+++|+.|..+.+|....          ...+..+.+|.++|-++.|++... +|++|+.+
T Consensus        24 ~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~k----------p~~i~S~~~hespIeSl~f~~~E~-Llaagsas   91 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGK----------PNAITSLTGHESPIESLTFDTSER-LLAAGSAS   91 (825)
T ss_pred             hhhhhhhhceeeeeccc-eeeccCCCceeeccccccC----------CchhheeeccCCcceeeecCcchh-hhcccccC
Confidence            34688999999986655 7899999999999999876          455667899999999999999988 89999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      |+|++||+..+      ..++++.+|...+..+.|+|.+ .++|+|+.|+.+++||+|...+   .+.+.+|...|..+.
T Consensus        92 gtiK~wDleeA------k~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc---~~~~~s~~~vv~~l~  161 (825)
T KOG0267|consen   92 GTIKVWDLEEA------KIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGC---SHTYKSHTRVVDVLR  161 (825)
T ss_pred             Cceeeeehhhh------hhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCc---eeeecCCcceeEEEe
Confidence            99999999987      4577889999999999999998 5889999999999999998775   899999999999999


Q ss_pred             eCCCCCc--cCCCCceEEeeecc
Q 020480          281 LNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       281 ~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      |+|+|++  ++++|.++++|+.+
T Consensus       162 lsP~Gr~v~~g~ed~tvki~d~~  184 (825)
T KOG0267|consen  162 LSPDGRWVASGGEDNTVKIWDLT  184 (825)
T ss_pred             ecCCCceeeccCCcceeeeeccc
Confidence            9999986  78889999999984

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.73  E-value=3e-17  Score=140.89  Aligned_cols=183  Identities=16%  Similarity=0.123  Sum_probs=144.6

Q ss_pred             EEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec--CCCceEEEEecCCCCCeEEE
Q 020480          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG--HSTEGYGLSWSKFKEGHLLS  196 (325)
Q Consensus       119 ~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~l~s  196 (325)
                      +..+.|..-|.++.++... +.+.+|+ .|.|+|||+....       ...|+..+..  -...+.++...|+++ .|++
T Consensus       413 ~~tL~HGEvVcAvtIS~~t-rhVyTgG-kgcVKVWdis~pg-------~k~PvsqLdcl~rdnyiRSckL~pdgr-tLiv  482 (705)
T KOG0639|consen  413 INTLAHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISQPG-------NKSPVSQLDCLNRDNYIRSCKLLPDGR-TLIV  482 (705)
T ss_pred             hhhhccCcEEEEEEecCCc-ceeEecC-CCeEEEeeccCCC-------CCCccccccccCcccceeeeEecCCCc-eEEe
Confidence            4566799999999999876 6888866 5799999998742       2344544443  346789999999999 7999


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCe
Q 020480          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (325)
Q Consensus       197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  276 (325)
                      |+.-.++.|||+.....    .....+....-.+++++.+|+. .+..+|..||.|.|||+++..   .+..+++|+..+
T Consensus       483 GGeastlsiWDLAapTp----rikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~---~VrqfqGhtDGa  554 (705)
T KOG0639|consen  483 GGEASTLSIWDLAAPTP----RIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQT---LVRQFQGHTDGA  554 (705)
T ss_pred             ccccceeeeeeccCCCc----chhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccce---eeecccCCCCCc
Confidence            99999999999987643    1122233334567889999986 688899999999999999988   489999999999


Q ss_pred             eEEEeCCCCC--ccCCCCceEEeeeccee--eeccCeeEEEeecCCC
Q 020480          277 GVSILNASFR--LSHEDTCTCTHRHSRYL--LYKFPFFVLVFPLFPS  319 (325)
Q Consensus       277 ~~i~~~p~~~--~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~  319 (325)
                      .||..+++|.  ++|+.|.++|.||+|..  ..++.+.+.+|.|...
T Consensus       555 scIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~c  601 (705)
T KOG0639|consen  555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYC  601 (705)
T ss_pred             eeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccC
Confidence            9999999987  49999999999999875  3566677777777643

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.73  E-value=7.7e-17  Score=143.14  Aligned_cols=152  Identities=20%  Similarity=0.229  Sum_probs=131.1

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ..+|+..|.++..-|.+  .+++|+.|.+|++|.-.            ..+.++.+|++-|.++++-+++.  |+||+.|
T Consensus       136 l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~------------~~l~tf~gHtD~VRgL~vl~~~~--flScsND  199 (745)
T KOG0301|consen  136 LQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGG------------TLLKTFSGHTDCVRGLAVLDDSH--FLSCSND  199 (745)
T ss_pred             cCCcchheeeeeecCCC--cEEeccCcceeeeccCC------------chhhhhccchhheeeeEEecCCC--eEeecCC
Confidence            56899999999999986  79999999999999864            34678999999999999998764  9999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      |.|++|++..       .++..+.+|++-|++++..+++ ..+++++.|++++||+..  .   ..+.+.-....|+++.
T Consensus       200 g~Ir~w~~~g-------e~l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~--e---~~q~I~lPttsiWsa~  266 (745)
T KOG0301|consen  200 GSIRLWDLDG-------EVLLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKD--E---CVQVITLPTTSIWSAK  266 (745)
T ss_pred             ceEEEEeccC-------ceeeeeeccceEEEEEEecCCC-CeEEEecCCceEEEeecC--c---eEEEEecCccceEEEE
Confidence            9999999954       4688899999999999966654 589999999999999987  3   3666654455899999


Q ss_pred             eCCCCCc-cCCCCceEEeeecc
Q 020480          281 LNASFRL-SHEDTCTCTHRHSR  301 (325)
Q Consensus       281 ~~p~~~~-~~~~d~~~~~~~~~  301 (325)
                      +-++|.+ .|+.||.+++|...
T Consensus       267 ~L~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  267 VLLNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             EeeCCCEEEeccCceEEEEEec
Confidence            9999987 89999999998654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.72  E-value=2.8e-16  Score=134.80  Aligned_cols=206  Identities=19%  Similarity=0.259  Sum_probs=154.3

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      -++.+|||+.....+-..+..|+..  ++-|++.-..+          .++.++..+     .|.|..+.          
T Consensus        99 ~~~~Vkiwdl~~kl~hr~lkdh~st--vt~v~YN~~De----------yiAsvs~gG-----diiih~~~----------  151 (673)
T KOG4378|consen   99 QSGCVKIWDLRAKLIHRFLKDHQST--VTYVDYNNTDE----------YIASVSDGG-----DIIIHGTK----------  151 (673)
T ss_pred             cCceeeehhhHHHHHhhhccCCcce--eEEEEecCCcc----------eeEEeccCC-----cEEEEecc----------
Confidence            4578999999988888888888855  66666665443          333333222     34444332          


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE-Ee
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR-LR  175 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~  175 (325)
                                      .+.-.....++....|.-+.|+|....+|.+++.+|.|.+||+..          ..|++. ..
T Consensus       152 ----------------t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g----------~sp~~~~~~  205 (673)
T KOG4378|consen  152 ----------------TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG----------MSPIFHASE  205 (673)
T ss_pred             ----------------cCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC----------CCcccchhh
Confidence                            000000012233455668899998878899999999999999987          444543 45


Q ss_pred             cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEE
Q 020480          176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW  255 (325)
Q Consensus       176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iw  255 (325)
                      .|..+...++|+|.+.-+|++.+.|..|.+||++.....      ..+ ....+...++|.++| .+|+.|...|.|..|
T Consensus       206 ~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~------~~l-~y~~Plstvaf~~~G-~~L~aG~s~G~~i~Y  277 (673)
T KOG4378|consen  206 AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST------DRL-TYSHPLSTVAFSECG-TYLCAGNSKGELIAY  277 (673)
T ss_pred             hccCCcCcceecCCccceEEEecccceEEEeeccccccc------cee-eecCCcceeeecCCc-eEEEeecCCceEEEE
Confidence            899999999999999889999999999999999965332      111 234568899999998 799999999999999


Q ss_pred             EccCCCCCCCeeEeeccCCCeeEEEeCCCC
Q 020480          256 DLRTPSVSKPVQSVVAHQSEVGVSILNASF  285 (325)
Q Consensus       256 d~~~~~~~~~~~~~~~h~~~v~~i~~~p~~  285 (325)
                      |+|..+.  |+..+.+|...|++|+|-|..
T Consensus       278 D~R~~k~--Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  278 DMRSTKA--PVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ecccCCC--CceEeeecccceeEEEeeecc
Confidence            9999886  899999999999999997763

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.72  E-value=8.8e-17  Score=136.55  Aligned_cols=156  Identities=16%  Similarity=0.167  Sum_probs=135.3

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      .|...+.+++.+++| ++||+|+.|..|.||+..+          .+++..+.+|.+.|.+++|-.... .+++++.|++
T Consensus       200 ~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t----------~ehv~~~~ghr~~V~~L~fr~gt~-~lys~s~Drs  267 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDT----------LEHVKVFKGHRGAVSSLAFRKGTS-ELYSASADRS  267 (479)
T ss_pred             cccceeEEEEEcCCC-cEEEecCCCceEEEecCcc----------cchhhcccccccceeeeeeecCcc-ceeeeecCCc
Confidence            899999999999999 8999999999999999988          677888999999999999987655 7999999999


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeC
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN  282 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~  282 (325)
                      |++|++...      ..+.++.+|...|.++.-.... ..+-+|+.|+++++|++....    -..+.+|.+.+-|++|-
T Consensus       268 vkvw~~~~~------s~vetlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ees----qlifrg~~~sidcv~~I  336 (479)
T KOG0299|consen  268 VKVWSIDQL------SYVETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEES----QLIFRGGEGSIDCVAFI  336 (479)
T ss_pred             eEEEehhHh------HHHHHHhCCccceeeechhccc-ceEEeccccceeEEEeccccc----eeeeeCCCCCeeeEEEe
Confidence            999999876      4577889999999999876554 677677799999999995443    45567888899999998


Q ss_pred             CCCCc-cCCCCceEEeeecc
Q 020480          283 ASFRL-SHEDTCTCTHRHSR  301 (325)
Q Consensus       283 p~~~~-~~~~d~~~~~~~~~  301 (325)
                      .+..+ +|+++|.+.+|.+.
T Consensus       337 n~~HfvsGSdnG~IaLWs~~  356 (479)
T KOG0299|consen  337 NDEHFVSGSDNGSIALWSLL  356 (479)
T ss_pred             cccceeeccCCceEEEeeec
Confidence            77765 99999999999863

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.72  E-value=4.7e-16  Score=125.07  Aligned_cols=163  Identities=17%  Similarity=0.143  Sum_probs=128.7

Q ss_pred             ccCCCeeEEEecCC-CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          123 NHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       123 ~h~~~v~~v~~~~~-~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      +|....++-+|+|. +.+.+++ ..|+++..||+++.         .+....-..|...|.++.|+|+....|+||+.||
T Consensus       168 e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~---------~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdg  237 (370)
T KOG1007|consen  168 EMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTM---------KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDG  237 (370)
T ss_pred             cccceecccccCCCCccceEEE-eCCCcEEEEEccch---------hhhcchhhhhcceeeeccCCCCceEEEEEcCCCc
Confidence            35666778899993 3366776 56889999999972         1112223478889999999999998999999999


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC-------------------
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-------------------  262 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-------------------  262 (325)
                      .|++||.|..+     .++..+.+|...|+++.|+|....++++||.|..|.+|...+-..                   
T Consensus       238 yvriWD~R~tk-----~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dse  312 (370)
T KOG1007|consen  238 YVRIWDTRKTK-----FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSE  312 (370)
T ss_pred             cEEEEeccCCC-----ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhH
Confidence            99999999875     478889999999999999998888999999999999998754220                   


Q ss_pred             --CC-----CeeEeeccCCCeeEEEeCCCCCc---cCCCCceEEeeec
Q 020480          263 --SK-----PVQSVVAHQSEVGVSILNASFRL---SHEDTCTCTHRHS  300 (325)
Q Consensus       263 --~~-----~~~~~~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~  300 (325)
                        .+     .+.++..|...|.+++|+.-...   +-++||.+.+-.+
T Consensus       313 er~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  313 ERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             HhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence              01     24466789999999999976663   6678887776544

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=1.5e-15  Score=123.26  Aligned_cols=161  Identities=15%  Similarity=0.142  Sum_probs=121.6

Q ss_pred             EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480          118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (325)
Q Consensus       118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  197 (325)
                      +...+.|..++.+++|.+..  .+++|+.||.|+.+|+..           .....+..|..++.++..++... .+++|
T Consensus        47 l~~~~~~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dln~-----------~~~~~igth~~~i~ci~~~~~~~-~vIsg  112 (323)
T KOG1036|consen   47 LKLKFKHGAPLLDCAFADES--TIVTGGLDGQVRRYDLNT-----------GNEDQIGTHDEGIRCIEYSYEVG-CVISG  112 (323)
T ss_pred             hhhheecCCceeeeeccCCc--eEEEeccCceEEEEEecC-----------CcceeeccCCCceEEEEeeccCC-eEEEc
Confidence            33467899999999999854  799999999999999987           33556778999999999998766 89999


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC--------------
Q 020480          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS--------------  263 (325)
Q Consensus       198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~--------------  263 (325)
                      +.|++|++||.+...      ....+. ....|.++...  + +.|+.|+.|..+.+||+|+....              
T Consensus       113 sWD~~ik~wD~R~~~------~~~~~d-~~kkVy~~~v~--g-~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~  182 (323)
T KOG1036|consen  113 SWDKTIKFWDPRNKV------VVGTFD-QGKKVYCMDVS--G-NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRC  182 (323)
T ss_pred             ccCccEEEEeccccc------cccccc-cCceEEEEecc--C-CEEEEeecCceEEEEEcccccchhhhccccceeEEEE
Confidence            999999999999632      222222 23478877765  3 57888889999999999874321              


Q ss_pred             -------------------------------CCeeEeeccC---------CCeeEEEeCCC-CCc-cCCCCceEEeeecc
Q 020480          264 -------------------------------KPVQSVVAHQ---------SEVGVSILNAS-FRL-SHEDTCTCTHRHSR  301 (325)
Q Consensus       264 -------------------------------~~~~~~~~h~---------~~v~~i~~~p~-~~~-~~~~d~~~~~~~~~  301 (325)
                                                     ..-..++.|.         -||++|+|+|- +.+ +||.||.+.+|+..
T Consensus       183 v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~  262 (323)
T KOG1036|consen  183 VALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF  262 (323)
T ss_pred             EEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence                                           0011122232         27999999995 444 99999999999874


Q ss_pred             e
Q 020480          302 Y  302 (325)
Q Consensus       302 ~  302 (325)
                      .
T Consensus       263 ~  263 (323)
T KOG1036|consen  263 N  263 (323)
T ss_pred             c
Confidence            4

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=4.4e-15  Score=120.51  Aligned_cols=188  Identities=14%  Similarity=0.165  Sum_probs=135.1

Q ss_pred             CceEEE-EEeccCCCeeEEEecCC-CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCC
Q 020480          114 GKVQII-QQINHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE  191 (325)
Q Consensus       114 ~~~~~~-~~~~h~~~v~~v~~~~~-~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~  191 (325)
                      +...+. ....|.+.|..+.|.+. =++.+|+++.|+++.||.-..... .....++....++....+.|+++.|.|...
T Consensus        47 ~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~-~~~~~~Wv~~ttl~DsrssV~DV~FaP~hl  125 (361)
T KOG2445|consen   47 GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE-EAHGRRWVRRTTLVDSRSSVTDVKFAPKHL  125 (361)
T ss_pred             CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc-ccccceeEEEEEeecCCcceeEEEecchhc
Confidence            344443 34569999999999864 237999999999999998632111 111123455667778889999999999643


Q ss_pred             C-eEEEEeCCCcEEEEeCCCCCCC--------------------------------------------------------
Q 020480          192 G-HLLSGSDDAQICLWDINAAPKN--------------------------------------------------------  214 (325)
Q Consensus       192 ~-~l~s~s~dg~i~iwd~~~~~~~--------------------------------------------------------  214 (325)
                      + .+++++.||.+|||+.-.....                                                        
T Consensus       126 GLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye  205 (361)
T KOG2445|consen  126 GLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYE  205 (361)
T ss_pred             ceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEE
Confidence            3 6899999999999975432100                                                        


Q ss_pred             -----CcccceEeeecCCccEEEEEeecCC---CcEEEEEecCCcEEEEEccCCC-----------------CCCCeeEe
Q 020480          215 -----KSLEAMQIFKVHEGVVEDVAWHLRH---EYLFGSVGDDQYLLIWDLRTPS-----------------VSKPVQSV  269 (325)
Q Consensus       215 -----~~~~~~~~~~~~~~~v~~v~~~p~~---~~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~~~~  269 (325)
                           .....+..+.+|+..|++++|.|+-   ..+||+++.|| |+||.++...                 ..+.+..+
T Consensus       206 ~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~  284 (361)
T KOG2445|consen  206 YNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL  284 (361)
T ss_pred             ecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec
Confidence                 0001122345688999999999963   36899999999 9999998421                 01234456


Q ss_pred             eccCCCeeEEEeCCCCCc--cCCCCceEEeeeccee
Q 020480          270 VAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       270 ~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~  303 (325)
                      ..|.++|+.+.|+-.|.+  +.|+||.+|+|...+.
T Consensus       285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN  320 (361)
T ss_pred             cCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence            789999999999999986  8899999999986543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.71  E-value=1.2e-16  Score=140.90  Aligned_cols=152  Identities=17%  Similarity=0.210  Sum_probs=123.2

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      ....|+.+.|.|-+...||+++.||.|++|.+.......   ....|...+.+|...|+++.|+|--.+.|++++.|-+|
T Consensus       626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e---~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti  702 (1012)
T KOG1445|consen  626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE---NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTI  702 (1012)
T ss_pred             cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc---ccCCcceeeecccceEEEEEecchhhhHhhhhhcccee
Confidence            556899999999888999999999999999987632221   23566778899999999999999988899999999999


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc-CCCeeEEEeC
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-QSEVGVSILN  282 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~i~~~  282 (325)
                      ++||++.+.      ....+.+|...|..++|+|+| +.+|+.+.||+|++|..|+...  +++.-.+- ...--.|.|.
T Consensus       703 ~lWDl~~~~------~~~~l~gHtdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~--pv~Eg~gpvgtRgARi~wa  773 (1012)
T KOG1445|consen  703 ELWDLANAK------LYSRLVGHTDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSREQ--PVYEGKGPVGTRGARILWA  773 (1012)
T ss_pred             eeeehhhhh------hhheeccCcCceeEEEECCCC-cceeeeecCceEEEeCCCCCCC--ccccCCCCccCcceeEEEE
Confidence            999999874      355678999999999999998 7999999999999999998875  55543221 1222345666


Q ss_pred             CCCCc
Q 020480          283 ASFRL  287 (325)
Q Consensus       283 p~~~~  287 (325)
                      -+|++
T Consensus       774 cdgr~  778 (1012)
T KOG1445|consen  774 CDGRI  778 (1012)
T ss_pred             ecCcE
Confidence            66663

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=3.1e-15  Score=121.78  Aligned_cols=222  Identities=10%  Similarity=0.093  Sum_probs=153.9

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+..+++++...+.....+...+-+  +-.+.|.....          .++.++   ..+++.|..+++.          
T Consensus        34 ~dDsl~LYd~~~g~~~~ti~skkyG--~~~~~Fth~~~----------~~i~sS---tk~d~tIryLsl~----------   88 (311)
T KOG1446|consen   34 EDDSLRLYDSLSGKQVKTINSKKYG--VDLACFTHHSN----------TVIHSS---TKEDDTIRYLSLH----------   88 (311)
T ss_pred             CCCeEEEEEcCCCceeeEeeccccc--ccEEEEecCCc----------eEEEcc---CCCCCceEEEEee----------
Confidence            4455666666665555555555544  33334433322          233333   2455667666664          


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG  176 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  176 (325)
                                      +.+. +...-+|...|+.++.+|-+ ..+++++.|++|++||++.        ..+  ...+. 
T Consensus        89 ----------------dNky-lRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~--------~~c--qg~l~-  139 (311)
T KOG1446|consen   89 ----------------DNKY-LRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRV--------KKC--QGLLN-  139 (311)
T ss_pred             ----------------cCce-EEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecC--------CCC--ceEEe-
Confidence                            2222 22345799999999999988 7999999999999999996        222  22222 


Q ss_pred             CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeee---cCCccEEEEEeecCCCcEEEEEecCCcEE
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK---VHEGVVEDVAWHLRHEYLFGSVGDDQYLL  253 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~v~~v~~~p~~~~~l~s~~~dg~i~  253 (325)
                       ...-...+|.|.|- ++|++...+.|++||+|.-.+.    |..++.   +.....+.+.|+|+|. .++.+...+.++
T Consensus       140 -~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkg----PF~tf~i~~~~~~ew~~l~FS~dGK-~iLlsT~~s~~~  212 (311)
T KOG1446|consen  140 -LSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKG----PFTTFSITDNDEAEWTDLEFSPDGK-SILLSTNASFIY  212 (311)
T ss_pred             -cCCCcceeECCCCc-EEEEecCCCeEEEEEecccCCC----CceeEccCCCCccceeeeEEcCCCC-EEEEEeCCCcEE
Confidence             22234678999998 8888888889999999987653    444443   3367889999999985 666778889999


Q ss_pred             EEEccCCCCCCCeeEeeccCCCe---eEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          254 IWDLRTPSVSKPVQSVVAHQSEV---GVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       254 iwd~~~~~~~~~~~~~~~h~~~v---~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      +.|.-.+..   ..++..+...-   -+..|.|++++  ++++|+++.+|++..
T Consensus       213 ~lDAf~G~~---~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t  263 (311)
T KOG1446|consen  213 LLDAFDGTV---KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET  263 (311)
T ss_pred             EEEccCCcE---eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence            999999884   66665554332   56789999995  889999999998743

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=3e-15  Score=121.87  Aligned_cols=157  Identities=13%  Similarity=0.157  Sum_probs=127.3

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC--CC
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD--DA  201 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~--dg  201 (325)
                      ..+.|+++.|+++| ..+++++.|-.+++||...          ...+.++..+.-.+..++|-.... .++.++.  |.
T Consensus        13 ~~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~----------g~~~~ti~skkyG~~~~~Fth~~~-~~i~sStk~d~   80 (311)
T KOG1446|consen   13 TNGKINSLDFSDDG-LLLITSSEDDSLRLYDSLS----------GKQVKTINSKKYGVDLACFTHHSN-TVIHSSTKEDD   80 (311)
T ss_pred             CCCceeEEEecCCC-CEEEEecCCCeEEEEEcCC----------CceeeEeecccccccEEEEecCCc-eEEEccCCCCC
Confidence            57899999999999 5777788999999999987          455677777777888888876666 4666665  88


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEe
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL  281 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~  281 (325)
                      +|+.-++...      +.++.|.+|...|++++.+|-+ ..+++++.|++||+||+|..++   ...+..  ..-..++|
T Consensus        81 tIryLsl~dN------kylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~c---qg~l~~--~~~pi~Af  148 (311)
T KOG1446|consen   81 TIRYLSLHDN------KYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKC---QGLLNL--SGRPIAAF  148 (311)
T ss_pred             ceEEEEeecC------ceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCC---ceEEec--CCCcceeE
Confidence            9999999887      6799999999999999999987 6888999999999999998875   333322  23344799


Q ss_pred             CCCCCc--cCCCCceEEeeecceee
Q 020480          282 NASFRL--SHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       282 ~p~~~~--~~~~d~~~~~~~~~~~~  304 (325)
                      +|.|.+  ++.....++++|+|.+.
T Consensus       149 Dp~GLifA~~~~~~~IkLyD~Rs~d  173 (311)
T KOG1446|consen  149 DPEGLIFALANGSELIKLYDLRSFD  173 (311)
T ss_pred             CCCCcEEEEecCCCeEEEEEecccC
Confidence            999996  44445589999999874

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=1.6e-16  Score=148.45  Aligned_cols=230  Identities=16%  Similarity=0.207  Sum_probs=173.1

Q ss_pred             hhHHHHhhhHhcC------hhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCC
Q 020480           16 LINEEYKIWKKNT------PFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPL   89 (325)
Q Consensus        16 ~~~~~~~iw~~~~------~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~   89 (325)
                      ..|..|-+|+...      ..+.-.+..|+  -+++.++|.|....         .+     ++++.+..|.||+++-+.
T Consensus        87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~--G~V~gLDfN~~q~n---------lL-----ASGa~~geI~iWDlnn~~  150 (1049)
T KOG0307|consen   87 LEDGNIVLYDPASIIANASEEVLATKSKHT--GPVLGLDFNPFQGN---------LL-----ASGADDGEILIWDLNKPE  150 (1049)
T ss_pred             ccCCceEEecchhhccCcchHHHhhhcccC--CceeeeeccccCCc---------ee-----eccCCCCcEEEeccCCcC
Confidence            3444455554433      22333444444  35999999997641         12     445556689999997441


Q ss_pred             CCCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCC
Q 020480           90 DDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACS  169 (325)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~  169 (325)
                      ..                        +..- .....+.|.+++|+..-.++||+++.+|.+.|||++.          .+
T Consensus       151 tP------------------------~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~----------~~  195 (1049)
T KOG0307|consen  151 TP------------------------FTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK----------KK  195 (1049)
T ss_pred             CC------------------------CCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccC----------CC
Confidence            10                        1100 2345678999999998889999999999999999997          35


Q ss_pred             CcEEEecCCC--ceEEEEecCCCCCeEEEEeCCC---cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEE
Q 020480          170 PDLRLRGHST--EGYGLSWSKFKEGHLLSGSDDA---QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFG  244 (325)
Q Consensus       170 ~~~~~~~h~~--~v~~l~~~p~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  244 (325)
                      ++..+..|..  .+..+.|+|++...+++++.|.   .|.+||+|...     .+++.+++|..+|.++.|++.+..+++
T Consensus       196 pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-----sP~k~~~~H~~GilslsWc~~D~~lll  270 (1049)
T KOG0307|consen  196 PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-----SPLKILEGHQRGILSLSWCPQDPRLLL  270 (1049)
T ss_pred             cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-----CchhhhcccccceeeeccCCCCchhhh
Confidence            5655654443  4789999999988899988764   59999999764     478888999999999999999889999


Q ss_pred             EEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--c-cCCCCceEEeeecceee
Q 020480          245 SVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--L-SHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       245 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~-~~~~d~~~~~~~~~~~~  304 (325)
                      |++.|+.|.+|+..+++.   +..+.....++..+.|+|...  + .++.++.+.++.+....
T Consensus       271 SsgkD~~ii~wN~~tgEv---l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  271 SSGKDNRIICWNPNTGEV---LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             cccCCCCeeEecCCCceE---eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            999999999999999985   778877788999999999655  3 67788888887654443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=3.6e-15  Score=121.00  Aligned_cols=131  Identities=15%  Similarity=0.227  Sum_probs=101.9

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecC-CCCCeEEEEeCC
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK-FKEGHLLSGSDD  200 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~l~s~s~d  200 (325)
                      -+|..-|+++.|.+.| +.+|+|+.|++|+|||.+..      .+........+.|.+.|..+.|.+ .-...+++++.|
T Consensus        10 s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~D   82 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSD------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYD   82 (361)
T ss_pred             cCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCC------CCceEEeeeEEecCCcEEEEEecCccccceEEEEecC
Confidence            4688999999999999 79999999999999997551      234555566789999999999954 333389999999


Q ss_pred             CcEEEEeCCCCCC---CCcccceEeeecCCccEEEEEeecCC-CcEEEEEecCCcEEEEEccC
Q 020480          201 AQICLWDINAAPK---NKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRT  259 (325)
Q Consensus       201 g~i~iwd~~~~~~---~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~s~~~dg~i~iwd~~~  259 (325)
                      +++.||.-.....   ........++....+.|++++|.|.. .-.+|+++.||.+|||+...
T Consensus        83 rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d  145 (361)
T KOG2445|consen   83 RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD  145 (361)
T ss_pred             CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence            9999997532211   11223455677788899999999953 25789999999999998754

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=2.1e-15  Score=122.35  Aligned_cols=174  Identities=13%  Similarity=0.144  Sum_probs=136.7

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      -...|..+.|+|.+ ..|++++.||.+++|+....          . +...-.|..++.+++|.+..  .+++|+.||.|
T Consensus        12 P~d~IS~v~f~~~~-~~LLvssWDgslrlYdv~~~----------~-l~~~~~~~~plL~c~F~d~~--~~~~G~~dg~v   77 (323)
T KOG1036|consen   12 PEDGISSVKFSPSS-SDLLVSSWDGSLRLYDVPAN----------S-LKLKFKHGAPLLDCAFADES--TIVTGGLDGQV   77 (323)
T ss_pred             ChhceeeEEEcCcC-CcEEEEeccCcEEEEeccch----------h-hhhheecCCceeeeeccCCc--eEEEeccCceE
Confidence            35689999999887 45666689999999999872          1 22223588999999999854  59999999999


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCC
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNA  283 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p  283 (325)
                      +++|+.++.       ...+..|...|.++.+++.. ..+++||.|++|++||.|....   ...+. ....|.++....
T Consensus        78 r~~Dln~~~-------~~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~---~~~~d-~~kkVy~~~v~g  145 (323)
T KOG1036|consen   78 RRYDLNTGN-------EDQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVV---VGTFD-QGKKVYCMDVSG  145 (323)
T ss_pred             EEEEecCCc-------ceeeccCCCceEEEEeeccC-CeEEEcccCccEEEEecccccc---ccccc-cCceEEEEeccC
Confidence            999999874       34567799999999999864 6899999999999999997442   44443 244899999998


Q ss_pred             CCCccCCCCceEEeeecceeeec-------cCeeEEEeecCCCcccc
Q 020480          284 SFRLSHEDTCTCTHRHSRYLLYK-------FPFFVLVFPLFPSLQHY  323 (325)
Q Consensus       284 ~~~~~~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~  323 (325)
                      +..+.|..+..+.+||+|.....       +..+..+..++|..+.|
T Consensus       146 ~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy  192 (323)
T KOG1036|consen  146 NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGY  192 (323)
T ss_pred             CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCce
Confidence            88888889999999999887543       34556666677766554

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.68  E-value=1.1e-16  Score=137.54  Aligned_cols=152  Identities=12%  Similarity=0.087  Sum_probs=128.1

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~i  205 (325)
                      -.+.+++.+|+. ++.++++.||.|.|||+..          ...++.|+||++.+.+|..+++|. .|-||+.|++||-
T Consensus       510 paCyALa~spDa-kvcFsccsdGnI~vwDLhn----------q~~VrqfqGhtDGascIdis~dGt-klWTGGlDntvRc  577 (705)
T KOG0639|consen  510 PACYALAISPDA-KVCFSCCSDGNIAVWDLHN----------QTLVRQFQGHTDGASCIDISKDGT-KLWTGGLDNTVRC  577 (705)
T ss_pred             hhhhhhhcCCcc-ceeeeeccCCcEEEEEccc----------ceeeecccCCCCCceeEEecCCCc-eeecCCCccceee
Confidence            467789999988 7888889999999999998          466889999999999999999999 7999999999999


Q ss_pred             EeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCC
Q 020480          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASF  285 (325)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~  285 (325)
                      ||++.+...      .. ....+.|.++.++|++ ..++.|-..+.+.|-......    -+.+.-|.+-|.++.|.+.|
T Consensus       578 WDlregrql------qq-hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~----kyqlhlheScVLSlKFa~cG  645 (705)
T KOG0639|consen  578 WDLREGRQL------QQ-HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPE----KYQLHLHESCVLSLKFAYCG  645 (705)
T ss_pred             hhhhhhhhh------hh-hhhhhhheecccCCCc-cceeeecccCcEEEEecCCcc----ceeecccccEEEEEEecccC
Confidence            999987542      11 1235689999999997 588899999999888877665    35667799999999999999


Q ss_pred             Cc--cCCCCceEEeeecc
Q 020480          286 RL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       286 ~~--~~~~d~~~~~~~~~  301 (325)
                      ++  +.+.|.....|...
T Consensus       646 kwfvStGkDnlLnawrtP  663 (705)
T KOG0639|consen  646 KWFVSTGKDNLLNAWRTP  663 (705)
T ss_pred             ceeeecCchhhhhhccCc
Confidence            96  77888888887643

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.68  E-value=7.1e-16  Score=131.03  Aligned_cols=172  Identities=16%  Similarity=0.132  Sum_probs=136.8

Q ss_pred             ccCCCeeEEEecCCCC-cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          123 NHDGEVNRARYMPQNP-FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~-~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      -+.+.|++++|+|... +++|+|...|+|-+||+..+.      .....+..+..|..+|.++.|+|.+...+++.|.||
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~------~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE------KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC------CccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence            4889999999999876 799999999999999996321      112335567889999999999999998999999999


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEe
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL  281 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~  281 (325)
                      +|++-|+.....    ..+.........+..+.|+...+ .++.+..=|...+||+|+...  ....+.-|...|++|++
T Consensus       258 tiR~~D~~~~i~----e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s--~~~~~~lh~kKI~sv~~  330 (498)
T KOG4328|consen  258 TIRLQDFEGNIS----EEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGS--EYENLRLHKKKITSVAL  330 (498)
T ss_pred             eeeeeeecchhh----HHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCc--cchhhhhhhcccceeec
Confidence            999999987643    22223333445677788887764 455666667999999999875  35556678889999999


Q ss_pred             CCCCC---ccCCCCceEEeeecceeeecc
Q 020480          282 NASFR---LSHEDTCTCTHRHSRYLLYKF  307 (325)
Q Consensus       282 ~p~~~---~~~~~d~~~~~~~~~~~~~~~  307 (325)
                      +|...   +++|.|.+.++||+|.+.-+-
T Consensus       331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~  359 (498)
T KOG4328|consen  331 NPVCPWFLATASLDQTAKIWDLRQLRGKA  359 (498)
T ss_pred             CCCCchheeecccCcceeeeehhhhcCCC
Confidence            99766   399999999999999887655

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.68  E-value=1.1e-15  Score=124.68  Aligned_cols=215  Identities=18%  Similarity=0.273  Sum_probs=159.2

Q ss_pred             hhHHHHhhhHhcCh------hHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCC
Q 020480           16 LINEEYKIWKKNTP------FLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPL   89 (325)
Q Consensus        16 ~~~~~~~iw~~~~~------~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~   89 (325)
                      ..++-|++|+--++      ..|+.+....   ...+++|+|+++          .+++|-      .+.|.+.+...|.
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~de~t---aAhsL~Fs~DGe----------qlfaGy------krcirvFdt~RpG  190 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYT---AAHSLQFSPDGE----------QLFAGY------KRCIRVFDTSRPG  190 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhHHhhh---hheeEEecCCCC----------eEeecc------cceEEEeeccCCC
Confidence            35677899987664      3566665554   357999999986          444443      2578888887663


Q ss_pred             CCCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCC
Q 020480           90 DDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACS  169 (325)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~  169 (325)
                      .+...                   -........+..+.|.+++|+|.....+|.|+....+-||.-..          ..
T Consensus       191 r~c~v-------------------y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~----------~~  241 (406)
T KOG2919|consen  191 RDCPV-------------------YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG----------RR  241 (406)
T ss_pred             CCCcc-------------------hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC----------CC
Confidence            22110                   00011113456789999999999888999999999999998776          67


Q ss_pred             CcEEEecCCCceEEEEecCCCCCeEEEEeC-CCcEEEEeCCCCCCCCcccceEeeecCCc-cEEEE--EeecCCCcEEEE
Q 020480          170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-DAQICLWDINAAPKNKSLEAMQIFKVHEG-VVEDV--AWHLRHEYLFGS  245 (325)
Q Consensus       170 ~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~v~~v--~~~p~~~~~l~s  245 (325)
                      |+..+-+|.+.|+.++|.++|+ .|++|.. |-.|..||+|...     .++..+..|.. .-..|  ...|.+ ++||+
T Consensus       242 pl~llggh~gGvThL~~~edGn-~lfsGaRk~dkIl~WDiR~~~-----~pv~~L~rhv~~TNQRI~FDld~~~-~~Las  314 (406)
T KOG2919|consen  242 PLQLLGGHGGGVTHLQWCEDGN-KLFSGARKDDKILCWDIRYSR-----DPVYALERHVGDTNQRILFDLDPKG-EILAS  314 (406)
T ss_pred             ceeeecccCCCeeeEEeccCcC-eecccccCCCeEEEEeehhcc-----chhhhhhhhccCccceEEEecCCCC-ceeec
Confidence            7888889999999999999999 6777764 6789999999764     34555666654 22233  446776 79999


Q ss_pred             EecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc
Q 020480          246 VGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL  287 (325)
Q Consensus       246 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~  287 (325)
                      |+.||.|++||+.....  ++..+..|...++.++++|--.+
T Consensus       315 G~tdG~V~vwdlk~~gn--~~sv~~~~sd~vNgvslnP~mpi  354 (406)
T KOG2919|consen  315 GDTDGSVRVWDLKDLGN--EVSVTGNYSDTVNGVSLNPIMPI  354 (406)
T ss_pred             cCCCccEEEEecCCCCC--cccccccccccccceecCcccce
Confidence            99999999999998443  57778889999999999997555

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.67  E-value=9.7e-16  Score=135.08  Aligned_cols=255  Identities=13%  Similarity=0.096  Sum_probs=165.5

Q ss_pred             hhHHHHhhhHhcChhHHHH--hhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480           16 LINEEYKIWKKNTPFLYDL--VITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE   93 (325)
Q Consensus        16 ~~~~~~~iw~~~~~~~y~~--~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~   93 (325)
                      .=|.++|.|+++...+-..  +..|+..  +-+++|.|.....         ++.     ++.+++|+||++.....+..
T Consensus       119 sGDsT~r~Wdvk~s~l~G~~~~~GH~~S--vkS~cf~~~n~~v---------F~t-----GgRDg~illWD~R~n~~d~~  182 (720)
T KOG0321|consen  119 SGDSTIRPWDVKTSRLVGGRLNLGHTGS--VKSECFMPTNPAV---------FCT-----GGRDGEILLWDCRCNGVDAL  182 (720)
T ss_pred             cCCceeeeeeeccceeecceeecccccc--cchhhhccCCCcc---------eee-----ccCCCcEEEEEEeccchhhH
Confidence            3578999999999888877  7777766  6688899987632         433     34556899999975432221


Q ss_pred             cccCCCCcccCCCCCCCCC-CC----ceEEEEEeccCCCeeE---EEecCCCCcEEEEEec-CCeEEEEeCCCCCCCCCC
Q 020480           94 NDARHYDDDRSDFGGFGCA-NG----KVQIIQQINHDGEVNR---ARYMPQNPFLIATKTV-SAEVYVFDYSKHPSKPPL  164 (325)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~h~~~v~~---v~~~~~~~~~la~g~~-dg~v~vwd~~~~~~~~~~  164 (325)
                      +...     ...+...... .+    +-..-+...+...|..   +.+..+. ..||+++. |+.|+|||++.+-..-+ 
T Consensus       183 e~~~-----~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r-  255 (720)
T KOG0321|consen  183 EEFD-----NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYR-  255 (720)
T ss_pred             HHHh-----hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccc-
Confidence            1110     0111111110 11    1111122335555555   4555555 57888777 99999999987433221 


Q ss_pred             CCCCCCcEEEecC---CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCcc--EEEEEeecCC
Q 020480          165 DGACSPDLRLRGH---STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGV--VEDVAWHLRH  239 (325)
Q Consensus       165 ~~~~~~~~~~~~h---~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--v~~v~~~p~~  239 (325)
                       +.......+..|   .-.+.++.....|..++|+|. |++|+.|++.....    .++..+.++...  -..-..+|++
T Consensus       256 -~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~----sP~~~~sg~~~~sf~vks~lSpd~  329 (720)
T KOG0321|consen  256 -QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSI----SPVAEFSGKLNSSFYVKSELSPDD  329 (720)
T ss_pred             -cCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCc----CchhhccCcccceeeeeeecCCCC
Confidence             111112222233   335677888888885556555 99999999987654    445555554322  1223467887


Q ss_pred             CcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCC--C-ccCCCCceEEeeecce
Q 020480          240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASF--R-LSHEDTCTCTHRHSRY  302 (325)
Q Consensus       240 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~--~-~~~~~d~~~~~~~~~~  302 (325)
                       .++++|+.|...++|.+.+...  +...+.+|...|++++|.|..  . +++++|.++++|++..
T Consensus       330 -~~l~SgSsd~~ayiw~vs~~e~--~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  330 -CSLLSGSSDEQAYIWVVSSPEA--PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             -ceEeccCCCcceeeeeecCccC--ChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence             5889999999999999998876  778888999999999998853  3 4889999999998733

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.67  E-value=8.9e-17  Score=126.74  Aligned_cols=178  Identities=21%  Similarity=0.235  Sum_probs=147.5

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ...+|.++|.....+.+. ..-|+++.|-+-++||.-+          ...+.++ .|..-|..++|+.+.. .|++|+.
T Consensus        54 tfeghkgavw~~~l~~na-~~aasaaadftakvw~a~t----------gdelhsf-~hkhivk~~af~~ds~-~lltgg~  120 (334)
T KOG0278|consen   54 TFEGHKGAVWSATLNKNA-TRAASAAADFTAKVWDAVT----------GDELHSF-EHKHIVKAVAFSQDSN-YLLTGGQ  120 (334)
T ss_pred             eeeccCcceeeeecCchh-hhhhhhcccchhhhhhhhh----------hhhhhhh-hhhheeeeEEecccch-hhhccch
Confidence            356899999999999876 6888999999999999876          2234445 4778899999999988 7999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS  279 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i  279 (325)
                      +..+||||++...     .+...+.+|.+.|..+-|.... +.|++++.|++||+||.|++..   ++++. ...+|+++
T Consensus       121 ekllrvfdln~p~-----App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~---v~sL~-~~s~VtSl  190 (334)
T KOG0278|consen  121 EKLLRVFDLNRPK-----APPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTE---VQSLE-FNSPVTSL  190 (334)
T ss_pred             HHHhhhhhccCCC-----CCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcE---EEEEe-cCCCCcce
Confidence            9999999998765     3566789999999999999865 5777889999999999999985   77775 46789999


Q ss_pred             EeCCCCCc-cCCCCceEEeeeccee----eeccCeeEEEeecCCCc
Q 020480          280 ILNASFRL-SHEDTCTCTHRHSRYL----LYKFPFFVLVFPLFPSL  320 (325)
Q Consensus       280 ~~~p~~~~-~~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  320 (325)
                      .++++|++ +.++-+++++|+...+    .++.|...-...|-|..
T Consensus       191 Evs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k  236 (334)
T KOG0278|consen  191 EVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK  236 (334)
T ss_pred             eeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCC
Confidence            99999996 6677889999987665    36677666666666655

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=6e-15  Score=135.08  Aligned_cols=164  Identities=13%  Similarity=0.127  Sum_probs=130.7

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      ..-++.+++|+.+| +++|.|+.|-.|++-+...          ......+.+|.++|.+|.++|.+. +||+.+.||.|
T Consensus        95 ftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D----------~s~~~~lrgh~apVl~l~~~p~~~-fLAvss~dG~v  162 (933)
T KOG1274|consen   95 FTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDD----------SSQEKVLRGHDAPVLQLSYDPKGN-FLAVSSCDGKV  162 (933)
T ss_pred             eeccceEEEEecCC-cEEEeecCceeEEEEeccc----------cchheeecccCCceeeeeEcCCCC-EEEEEecCceE
Confidence            45678999999988 7999999999999999877          344678999999999999999999 99999999999


Q ss_pred             EEEeCCCCCCCCcccceEeeec--CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe--eccCCCeeEE
Q 020480          204 CLWDINAAPKNKSLEAMQIFKV--HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VAHQSEVGVS  279 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~i  279 (325)
                      ++||+..+.....+.-+..-..  ....+..++|+|++ ..|+..+.|+.|++|+......   ...+  ..+.+.+..+
T Consensus       163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~---~f~Lr~~~~ss~~~~~  238 (933)
T KOG1274|consen  163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWEL---QFKLRDKLSSSKFSDL  238 (933)
T ss_pred             EEEEcccchhhhhcccCCccccccccceeeeeeecCCC-CeEEeeccCCeEEEEccCCcee---heeecccccccceEEE
Confidence            9999998754333222211111  13456779999997 4677888999999999988774   3333  3344559999


Q ss_pred             EeCCCCCc--cCCCCceEEeeeccee
Q 020480          280 ILNASFRL--SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       280 ~~~p~~~~--~~~~d~~~~~~~~~~~  303 (325)
                      +|+|+|++  +++.++.+.+|++...
T Consensus       239 ~wsPnG~YiAAs~~~g~I~vWnv~t~  264 (933)
T KOG1274|consen  239 QWSPNGKYIAASTLDGQILVWNVDTH  264 (933)
T ss_pred             EEcCCCcEEeeeccCCcEEEEecccc
Confidence            99999996  7788999999998753

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.66  E-value=2.6e-15  Score=122.77  Aligned_cols=179  Identities=18%  Similarity=0.234  Sum_probs=139.4

Q ss_pred             eccCCCeeEEEecC----CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe--cCCCceEEEEecCC---CCC
Q 020480          122 INHDGEVNRARYMP----QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR--GHSTEGYGLSWSKF---KEG  192 (325)
Q Consensus       122 ~~h~~~v~~v~~~~----~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~---~~~  192 (325)
                      ..|+.+|..++|++    +.+..+|+.+.+ .+.+|.....       +....+....  .|......++|+-+   +.-
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d-------~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p  106 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGD-------GGIRLLQSYADEDHDESFYTCSWSYDSNTGNP  106 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCc-------cceeeeeeccCCCCCcceEEEEEEecCCCCCe
Confidence            35889999999995    234577776654 8999988762       1112222221  36667778888654   233


Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe---
Q 020480          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV---  269 (325)
Q Consensus       193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---  269 (325)
                      ++|.|+.-|.|+|.|+.++      .+...+.+|...|+.+.++|..++++++|+.|.+||+|++++..+   +..+   
T Consensus       107 ~la~~G~~GvIrVid~~~~------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C---v~VfGG~  177 (385)
T KOG1034|consen  107 FLAAGGYLGVIRVIDVVSG------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC---VAVFGGV  177 (385)
T ss_pred             eEEeecceeEEEEEecchh------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE---EEEeccc
Confidence            8899999999999999987      456778999999999999999999999999999999999999987   5554   


Q ss_pred             eccCCCeeEEEeCCCCCc--cCCCCceEEeeecce--ee---------------eccCeeEEEeecC
Q 020480          270 VAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY--LL---------------YKFPFFVLVFPLF  317 (325)
Q Consensus       270 ~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~--~~---------------~~~~~~~~~~~~~  317 (325)
                      .+|...|.++.|+++|..  ++|.|.++++|.+..  +.               -.||.....||.|
T Consensus       178 egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f  244 (385)
T KOG1034|consen  178 EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF  244 (385)
T ss_pred             ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence            789999999999999884  999999999998872  11               1367777777776

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.66  E-value=9.3e-16  Score=128.18  Aligned_cols=126  Identities=21%  Similarity=0.332  Sum_probs=110.8

Q ss_pred             EEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCC-cccceEeeecCCccEEEEEeecCCCcEEEEEecCCc
Q 020480          173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK-SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY  251 (325)
Q Consensus       173 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~  251 (325)
                      .+.||+++|..++|+|.+.+.+||||.|.+|.||++-...... ...++..+.+|...|--++|||...++|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4679999999999999999899999999999999987654332 224677889999999999999998899999999999


Q ss_pred             EEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          252 LLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       252 i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      |.+||+.+++.   +.++. |...|.++.|+.+|.+  +.+.|..+++|+-|.
T Consensus       156 v~iWnv~tgea---li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~  204 (472)
T KOG0303|consen  156 VSIWNVGTGEA---LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR  204 (472)
T ss_pred             EEEEeccCCce---eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCC
Confidence            99999999985   66666 9999999999999986  788999999998654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.66  E-value=3.1e-16  Score=131.64  Aligned_cols=168  Identities=18%  Similarity=0.167  Sum_probs=136.8

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      +-.+.|+++.|.+++ +.+++++.|+.+++|++..          .....++.+|++.|+++.|..... .+++|+.|.+
T Consensus       217 Gs~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~----------~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRt  284 (459)
T KOG0288|consen  217 GSLGNITSIDFDSDN-KHVIAASNDKNLRLWNVDS----------LRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRT  284 (459)
T ss_pred             ccCCCcceeeecCCC-ceEEeecCCCceeeeeccc----------hhhhhhhcccccceeeehhhcccc-ceeeccccch
Confidence            466889999999999 5677779999999999987          455778999999999999998877 5999999999


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeC
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN  282 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~  282 (325)
                      |++||+...      .|..++. ..+.+.+|+.++   ..+++|-.|+.||+||.|+...   ..+...+. .|+++..+
T Consensus       285 iK~WDl~k~------~C~kt~l-~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~---~~sv~~gg-~vtSl~ls  350 (459)
T KOG0288|consen  285 IKLWDLQKA------YCSKTVL-PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADK---TRSVPLGG-RVTSLDLS  350 (459)
T ss_pred             hhhhhhhhh------heecccc-ccccccceEecc---eeeeecccccceEEEeccCCce---eeEeecCc-ceeeEeec
Confidence            999999875      3343333 234567777662   5688999999999999999884   77776654 89999999


Q ss_pred             CCCC--ccCCCCceEEeeecceeeeccCeeEEEeec
Q 020480          283 ASFR--LSHEDTCTCTHRHSRYLLYKFPFFVLVFPL  316 (325)
Q Consensus       283 p~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  316 (325)
                      ++|.  ++++.|.++.+.+++......++.+.+|-.
T Consensus       351 ~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~  386 (459)
T KOG0288|consen  351 MDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC  386 (459)
T ss_pred             cCCeEEeeecCCCceeeeecccccEEEEeecccccc
Confidence            9987  478899999999999887777766665543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.65  E-value=2.2e-15  Score=129.43  Aligned_cols=239  Identities=14%  Similarity=0.164  Sum_probs=170.0

Q ss_pred             HHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccC
Q 020480           18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDAR   97 (325)
Q Consensus        18 ~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~   97 (325)
                      ..++|+|+...-..-..+..++.+--.-+|.|....           .+++.+.+.   +..+.++.-.           
T Consensus        11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n-----------~lvvas~~g---dk~~~~~~K~-----------   65 (673)
T KOG4378|consen   11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRN-----------FLVVASMAG---DKVMRIKEKD-----------   65 (673)
T ss_pred             CCceEEeecccccCccccccCCCCCcceeeeccccc-----------eEEEeecCC---ceeEEEeccc-----------
Confidence            356788888776666666666665556788888754           244444322   2233333221           


Q ss_pred             CCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC
Q 020480           98 HYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH  177 (325)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h  177 (325)
                         .          ..|.+..+....-. .-.|++..... .++++|+..+.|+|||++.          ....+.+.+|
T Consensus        66 ---g----------~~~~Vp~~~k~~gd-~~~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~----------kl~hr~lkdh  120 (673)
T KOG4378|consen   66 ---G----------KTPEVPRVRKLTGD-NAFCVACASQS-LYEISGGQSGCVKIWDLRA----------KLIHRFLKDH  120 (673)
T ss_pred             ---C----------CCCccceeeccccc-hHHHHhhhhcc-eeeeccCcCceeeehhhHH----------HHHhhhccCC
Confidence               0          12334444333322 33344433333 5899999999999999986          2335567899


Q ss_pred             CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecC-CccEEEEEeecCCCcEEEEEecCCcEEEEE
Q 020480          178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH-EGVVEDVAWHLRHEYLFGSVGDDQYLLIWD  256 (325)
Q Consensus       178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd  256 (325)
                      ++.|+++.++-... +|++++..|.|.|-.+.++.+      ...|... ...|.-+.|+|....+|.+++.+|.|.+||
T Consensus       121 ~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~------tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD  193 (673)
T KOG4378|consen  121 QSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQK------TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD  193 (673)
T ss_pred             cceeEEEEecCCcc-eeEEeccCCcEEEEecccCcc------ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence            99999999998888 899999999999999988754      3344443 345668999998778899999999999999


Q ss_pred             ccCCCCCCCeeEeeccCCCeeEEEeCCCCCc---cCCCCceEEeeecce------eeeccCeeEEEee
Q 020480          257 LRTPSVSKPVQSVVAHQSEVGVSILNASFRL---SHEDTCTCTHRHSRY------LLYKFPFFVLVFP  315 (325)
Q Consensus       257 ~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~~~------~~~~~~~~~~~~~  315 (325)
                      +.....  ...-...|..|...|+|+|....   +.|.|..+.++|.+.      +.+..|+.++.|.
T Consensus       194 v~g~sp--~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~  259 (673)
T KOG4378|consen  194 VQGMSP--IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFS  259 (673)
T ss_pred             ccCCCc--ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeec
Confidence            998874  23344789999999999998773   889999999998754      3467787777764

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.65  E-value=1.6e-15  Score=133.68  Aligned_cols=176  Identities=16%  Similarity=0.227  Sum_probs=125.9

Q ss_pred             EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480          118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (325)
Q Consensus       118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  197 (325)
                      +.....|..+|..+.|-| +..+|++++.|.++++||+..        ....-...+.+|+..|.+++|+|.++..|++|
T Consensus        93 lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~--------s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tG  163 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT--------SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTG  163 (720)
T ss_pred             hcccccccceeEeeccCC-CceeEEEccCCceeeeeeecc--------ceeecceeecccccccchhhhccCCCcceeec
Confidence            445678999999999999 668999999999999999987        33433445789999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCCCC--------------C-------cccceEeeecCCccEEE---EEeecCCCcEEEEEec-CCcE
Q 020480          198 SDDAQICLWDINAAPKN--------------K-------SLEAMQIFKVHEGVVED---VAWHLRHEYLFGSVGD-DQYL  252 (325)
Q Consensus       198 s~dg~i~iwd~~~~~~~--------------~-------~~~~~~~~~~~~~~v~~---v~~~p~~~~~l~s~~~-dg~i  252 (325)
                      +.||.|.|||++.....              .       .-+.++...++...|..   +.+..+. ..||+++. |+.|
T Consensus       164 gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~i  242 (720)
T KOG0321|consen  164 GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTI  242 (720)
T ss_pred             cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcce
Confidence            99999999999865411              0       00112223344444544   4445554 68888887 9999


Q ss_pred             EEEEccCCCCC---CCeeE--eecc---CCCeeEEEeCCCCCc--cCCCCceEEeeeccee
Q 020480          253 LIWDLRTPSVS---KPVQS--VVAH---QSEVGVSILNASFRL--SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       253 ~iwd~~~~~~~---~~~~~--~~~h---~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~  303 (325)
                      +|||+|.....   .+...  +..|   .-.+.++..+..|..  ....|++|..|+++..
T Consensus       243 KVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~  303 (720)
T KOG0321|consen  243 KVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL  303 (720)
T ss_pred             EEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence            99999986542   12222  2223   224677777776663  3345888988887654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.64  E-value=3.8e-15  Score=124.97  Aligned_cols=178  Identities=23%  Similarity=0.350  Sum_probs=133.8

Q ss_pred             CCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEE
Q 020480           42 WPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQ  121 (325)
Q Consensus        42 ~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (325)
                      -|+++++|.++...         ++     ++.+.++.|.+|.++....           ..        ...+++....
T Consensus        14 ~pv~s~dfq~n~~~---------~l-----aT~G~D~~iriW~v~r~~~-----------~~--------~~~~V~y~s~   60 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLN---------KL-----ATAGGDKDIRIWKVNRSEP-----------GG--------GDMKVEYLSS   60 (434)
T ss_pred             CceEEEEeccCccc---------ce-----ecccCccceeeeeeeecCC-----------CC--------CceeEEEeec
Confidence            37888888887641         23     3445667899999863310           00        1134555444


Q ss_pred             e-ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCC------CCCCCCCCCCcEEEecCCCceEEEEecCCCCCeE
Q 020480          122 I-NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPS------KPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL  194 (325)
Q Consensus       122 ~-~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~------~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  194 (325)
                      + .|..+|++++|+|+| .++|+|+.+|.|.+|.......      .......+.....+.+|...+..++|+|++. ++
T Consensus        61 Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l  138 (434)
T KOG1009|consen   61 LSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FL  138 (434)
T ss_pred             ccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-ee
Confidence            4 499999999999999 7999999999999998762111      0001122344556789999999999999999 89


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480          195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (325)
Q Consensus       195 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~  261 (325)
                      ++++.|..+++||+..+      .....+..|...+..++|.|.+ .++++-+.|...+.+.+....
T Consensus       139 ~s~s~dns~~l~Dv~~G------~l~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~  198 (434)
T KOG1009|consen  139 VSGSVDNSVRLWDVHAG------QLLAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQ  198 (434)
T ss_pred             eeeeccceEEEEEeccc------eeEeeccccccccceeecchhh-hhhhhhccCcccceeeeeeee
Confidence            99999999999999998      4577888999999999999987 588899999888877776543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.64  E-value=8.8e-15  Score=119.37  Aligned_cols=165  Identities=12%  Similarity=0.115  Sum_probs=136.3

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCC-CCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA-CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      ...+|+|.+|++++ ..+|++.....|.||....        .. .++.+++..|...|+.++|+|..+ .|++|+.|..
T Consensus         9 ~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~--------~~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drn   78 (361)
T KOG1523|consen    9 LLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLG--------ADLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRN   78 (361)
T ss_pred             ccCceeeeeecCCC-ceEEeccCCceEEEEEecC--------CCCceeceehhhhCcceeEEeecCCCC-ceeEccCCCC
Confidence            45799999999998 6999999999999999877        33 677889999999999999999998 7999999999


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCC-eeEeeccCCCeeEEEe
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP-VQSVVAHQSEVGVSIL  281 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~i~~  281 (325)
                      -+||....+..   ..+.-.+..++..++++.|+|.. +.||+|+.-..|.||-+...+.+-. -+.-+.+.+.|++++|
T Consensus        79 ayVw~~~~~~~---WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldW  154 (361)
T KOG1523|consen   79 AYVWTQPSGGT---WKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDW  154 (361)
T ss_pred             ccccccCCCCe---eccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeec
Confidence            99999854322   13444566688899999999985 8999999999999999987764211 1223567888999999


Q ss_pred             CCCCCc--cCCCCceEEeeecce
Q 020480          282 NASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       282 ~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      +|++.+  .|+.|+.|+++...+
T Consensus       155 hpnnVLlaaGs~D~k~rVfSayI  177 (361)
T KOG1523|consen  155 HPNNVLLAAGSTDGKCRVFSAYI  177 (361)
T ss_pred             cCCcceecccccCcceeEEEEee
Confidence            999986  788899999976543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=7.7e-15  Score=125.09  Aligned_cols=164  Identities=18%  Similarity=0.294  Sum_probs=133.5

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      +.+--+++|.++.-+|.| .+++.|+..|.+++|.+.+        +  ..+..+.+|-..|+++.|+-++. +|+||+.
T Consensus        76 q~~v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelss--------G--~LL~v~~aHYQ~ITcL~fs~dgs-~iiTgsk  143 (476)
T KOG0646|consen   76 QYIVLPGPVHALASSNLG-YFLLAGTISGNLYLWELSS--------G--ILLNVLSAHYQSITCLKFSDDGS-HIITGSK  143 (476)
T ss_pred             hhcccccceeeeecCCCc-eEEEeecccCcEEEEEecc--------c--cHHHHHHhhccceeEEEEeCCCc-EEEecCC
Confidence            455678999999999999 7888888999999999998        3  44666789999999999999999 8999999


Q ss_pred             CCcEEEEeCCCC---CCCCcccceEeeecCCccEEEEEeecCC-CcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCC
Q 020480          200 DAQICLWDINAA---PKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (325)
Q Consensus       200 dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~  275 (325)
                      ||.|.+|.+-..   .......+++.|..|+-.|+++...+-+ ...++|+|.|.++++||+..+..   +.++ ....+
T Consensus       144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L---Llti-~fp~s  219 (476)
T KOG0646|consen  144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL---LLTI-TFPSS  219 (476)
T ss_pred             CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee---eEEE-ecCCc
Confidence            999999976432   1122446889999999999999887642 25788999999999999999873   4444 35788


Q ss_pred             eeEEEeCCCCCc--cCCCCceEEeee
Q 020480          276 VGVSILNASFRL--SHEDTCTCTHRH  299 (325)
Q Consensus       276 v~~i~~~p~~~~--~~~~d~~~~~~~  299 (325)
                      +.+++.+|-++.  .|+.+|.+-+..
T Consensus       220 i~av~lDpae~~~yiGt~~G~I~~~~  245 (476)
T KOG0646|consen  220 IKAVALDPAERVVYIGTEEGKIFQNL  245 (476)
T ss_pred             ceeEEEcccccEEEecCCcceEEeee
Confidence            999999998774  777777666543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=3.2e-15  Score=122.83  Aligned_cols=166  Identities=18%  Similarity=0.211  Sum_probs=124.5

Q ss_pred             eccCCCeeEEEecCC-CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceEEEEecCCCCCeEEEEe-
Q 020480          122 INHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSWSKFKEGHLLSGS-  198 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~-~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~l~s~s-  198 (325)
                      ..++..++.++|... +++.+.+|+.||+|++||++.        ....+.....++. .+..+++.+-.+. .+++|. 
T Consensus        67 k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs--------~~e~a~~~~~~~~~~~f~~ld~nck~~-ii~~GtE  137 (376)
T KOG1188|consen   67 KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRS--------QAESARISWTQQSGTPFICLDLNCKKN-IIACGTE  137 (376)
T ss_pred             cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeec--------chhhhheeccCCCCCcceEeeccCcCC-eEEeccc
Confidence            457888888999875 568899999999999999998        3344455566665 4556666655555 677764 


Q ss_pred             ---CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCC
Q 020480          199 ---DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (325)
Q Consensus       199 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~  275 (325)
                         .+-.|.+||+|..+..    ...-...|...|++++|+|.++++|+||+.||.|.|||+.......++...-.|.+.
T Consensus       138 ~~~s~A~v~lwDvR~~qq~----l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sS  213 (376)
T KOG1188|consen  138 LTRSDASVVLWDVRSEQQL----LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSS  213 (376)
T ss_pred             cccCceEEEEEEeccccch----hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccce
Confidence               4678999999987531    122346799999999999999999999999999999999977654455555568888


Q ss_pred             eeEEEeCCCC--Cc-cCCCCceEEeeec
Q 020480          276 VGVSILNASF--RL-SHEDTCTCTHRHS  300 (325)
Q Consensus       276 v~~i~~~p~~--~~-~~~~d~~~~~~~~  300 (325)
                      |.++.|...+  ++ .-+.+.+..+|++
T Consensus       214 I~~igw~~~~ykrI~clTH~Etf~~~el  241 (376)
T KOG1188|consen  214 IHLIGWLSKKYKRIMCLTHMETFAIYEL  241 (376)
T ss_pred             eeeeeeecCCcceEEEEEccCceeEEEc
Confidence            9999999887  44 3334555555554

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=7.1e-15  Score=119.88  Aligned_cols=173  Identities=18%  Similarity=0.196  Sum_probs=124.9

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC------------------CCCC--------CCCcEE
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP------------------LDGA--------CSPDLR  173 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~------------------~~~~--------~~~~~~  173 (325)
                      ...+|.+.|++++|+.+| +.||+++.|+.|++|+++.......                  ++.+        ...++.
T Consensus        81 ~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            345799999999999999 7999999999999999976322110                  0000        000000


Q ss_pred             E-----------------------ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccE
Q 020480          174 L-----------------------RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVV  230 (325)
Q Consensus       174 ~-----------------------~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  230 (325)
                      +                       .-|+-.+..+-..-.+. ++++++.|..|.+|+++ +      +.+..+......-
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk-G------q~L~~idtnq~~n  231 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK-G------QLLQSIDTNQSSN  231 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC-C------ceeeeeccccccc
Confidence            0                       11333444444444455 89999999999999999 4      3455555555566


Q ss_pred             EEEEeecCCCcEEEEEecCCcEEEEEccCCC-----CCCCeeEeeccCCCeeEEEeCCCCC--ccCCCCceEEeeecce
Q 020480          231 EDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS-----VSKPVQSVVAHQSEVGVSILNASFR--LSHEDTCTCTHRHSRY  302 (325)
Q Consensus       231 ~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~i~~~p~~~--~~~~~d~~~~~~~~~~  302 (325)
                      +..+.+|+| +++|+++--.-|++|.+--.+     ....+..+++|.+.|..++|+++.+  ++.+.||+.++|+...
T Consensus       232 ~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  232 YDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             cceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence            778899998 799999999999999875322     1234567799999999999999877  4899999999998643

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.64  E-value=5.9e-15  Score=131.87  Aligned_cols=162  Identities=18%  Similarity=0.213  Sum_probs=129.6

Q ss_pred             EeccCCCeeEEEecCC--CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc------------------
Q 020480          121 QINHDGEVNRARYMPQ--NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE------------------  180 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~--~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~------------------  180 (325)
                      .-.|...|.|+.|+..  +.++||+++.|..|+|||+...         ..++.++.+|.+.                  
T Consensus       497 ~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn---------y~l~qtld~HSssITsvKFa~~gln~~Misc  567 (1080)
T KOG1408|consen  497 MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN---------YDLVQTLDGHSSSITSVKFACNGLNRKMISC  567 (1080)
T ss_pred             eecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc---------cchhhhhcccccceeEEEEeecCCceEEEec
Confidence            3469999999999963  3478999999999999998652         2223334444444                  


Q ss_pred             -------------------------------eEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeee---cC
Q 020480          181 -------------------------------GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK---VH  226 (325)
Q Consensus       181 -------------------------------v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~---~~  226 (325)
                                                     +++++..|... ++++++.|..|+|||+..++.      .+.|+   +|
T Consensus       568 GADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sgKq------~k~FKgs~~~  640 (1080)
T KOG1408|consen  568 GADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESGKQ------VKSFKGSRDH  640 (1080)
T ss_pred             cCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEeccccce------eeeecccccC
Confidence                                           44555555555 799999999999999998854      44444   46


Q ss_pred             CccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--ccCCCCceEEeeecce
Q 020480          227 EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--LSHEDTCTCTHRHSRY  302 (325)
Q Consensus       227 ~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~~~~~d~~~~~~~~~~  302 (325)
                      .+....+...|.+ .++|+.+.|.++.++|.-++++   +....+|...|+.+.|.++.+  ++.+.|+.+-+|.+..
T Consensus       641 eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgEc---vA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  641 EGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGEC---VAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             CCceEEEEECCCc-cEEEEeecCCceEEEEeccchh---hhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            6788889999987 7999999999999999999996   888899999999999999987  4888999999997643

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.64  E-value=3.2e-15  Score=127.15  Aligned_cols=171  Identities=19%  Similarity=0.212  Sum_probs=139.7

Q ss_pred             EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCC---CCC---C-CCCCcEEE-ecCCCceEEEEecCC
Q 020480          118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP---PLD---G-ACSPDLRL-RGHSTEGYGLSWSKF  189 (325)
Q Consensus       118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~---~~~---~-~~~~~~~~-~~h~~~v~~l~~~p~  189 (325)
                      +.....|.-+|.+++++|++ .+..+++.+|+|.-|++.......   ..+   . ...+...- .+|...+.+++.+++
T Consensus       135 ~~~~~~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D  213 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD  213 (479)
T ss_pred             ceeeccccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence            34456799999999999998 799999999999999987632110   000   0 01111111 389999999999999


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe
Q 020480          190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV  269 (325)
Q Consensus       190 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  269 (325)
                      +. +|++|+.|..|.||+.++.      ..+..+.+|.+.|.+++|-. +.+-+.+++.|++|++|++.....   +.++
T Consensus       214 gk-ylatgg~d~~v~Iw~~~t~------ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~---vetl  282 (479)
T KOG0299|consen  214 GK-YLATGGRDRHVQIWDCDTL------EHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSY---VETL  282 (479)
T ss_pred             Cc-EEEecCCCceEEEecCccc------chhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHH---HHHH
Confidence            99 8999999999999999988      45777899999999999976 457888999999999999998874   8888


Q ss_pred             eccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480          270 VAHQSEVGVSILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       270 ~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                      .+|.+.|.+|.-..-++.  .|+.|.++++|++
T Consensus       283 yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi  315 (479)
T KOG0299|consen  283 YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI  315 (479)
T ss_pred             hCCccceeeechhcccceEEeccccceeEEEec
Confidence            999999999988887775  6679999999987

>PF12265 CAF1C_H4-bd: Histone-binding protein RBBP4 or subunit C of CAF1 complex; InterPro: IPR022052 The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3

Probab=99.64  E-value=8.2e-17  Score=106.80  Aligned_cols=71  Identities=54%  Similarity=0.943  Sum_probs=53.4

Q ss_pred             HHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCC-CCCCCCcceEEEEEEecCCCCCCCeEEEEEEECC
Q 020480           18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRE-EPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLP   88 (325)
Q Consensus        18 ~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~   88 (325)
                      +|++++||+|+|.+|++++.+.++|||++|+|.|+.. ...+.....+++++||+++...+|+|+|+++.+|
T Consensus         1 ~e~~~lWk~n~p~lYd~~~~~~l~WPsLS~dwlpd~~~~~~~~~~~~~~ll~GT~t~~~~~n~l~v~~~~~p   72 (74)
T PF12265_consen    1 NEEYELWKKNDPSLYDLLHTHSLEWPSLSFDWLPDSLEGDNRNYPHSQYLLLGTQTSGQEQNYLYVMKVSLP   72 (74)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEE-SS--S-EEEEEEEEE--TT-SEEEEEEEEE---SS-S-EEEEEEEEEEE
T ss_pred             CcceeehhhCCHHHHHHHhhccCCCCCeEEEECcCcccccCCCCccEEEEEEEECcCCCCCCEEEEEEEeCC
Confidence            6899999999999999999999999999999999987 4434334488999999999999999999999876

1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six []. ; PDB: 2YBA_A 3C99_A 2YB8_B 2XYI_A 3C9C_A 3CFV_B 3CFS_B 2XU7_A 3GFC_A.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=4.1e-14  Score=125.76  Aligned_cols=158  Identities=12%  Similarity=0.175  Sum_probs=126.9

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      +-.+.|..++|++.+  .|++.+.+|.|.-||+.+          .++...+....+.|++++.+|.+. .++.|+.||.
T Consensus        67 ~~drsIE~L~W~e~~--RLFS~g~sg~i~EwDl~~----------lk~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGv  133 (691)
T KOG2048|consen   67 PEDRSIESLAWAEGG--RLFSSGLSGSITEWDLHT----------LKQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGV  133 (691)
T ss_pred             CCCCceeeEEEccCC--eEEeecCCceEEEEeccc----------CceeEEecCCCcceeEEEeCCccc-eEEeecCCce
Confidence            456899999999755  678888999999999988          566777888889999999999988 8999999997


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe--------eccCC
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--------VAHQS  274 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~h~~  274 (325)
                      +..++...+.    +...+.+...++.|.+++|+|++ ..+++|+.||.|++||...+..   ++..        ++...
T Consensus       134 l~~~s~~p~~----I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t---~~~~~~~~d~l~k~~~~  205 (691)
T KOG2048|consen  134 LYDFSIGPDK----ITYKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQT---LHIITMQLDRLSKREPT  205 (691)
T ss_pred             EEEEecCCce----EEEEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCce---EEEeeecccccccCCce
Confidence            7777766542    23445566678999999999997 6799999999999999998874   3311        11334


Q ss_pred             CeeEEEeCCCCCc-cCCCCceEEeeecc
Q 020480          275 EVGVSILNASFRL-SHEDTCTCTHRHSR  301 (325)
Q Consensus       275 ~v~~i~~~p~~~~-~~~~d~~~~~~~~~  301 (325)
                      -|+++.|-.++.+ +|...|++++||..
T Consensus       206 iVWSv~~Lrd~tI~sgDS~G~V~FWd~~  233 (691)
T KOG2048|consen  206 IVWSVLFLRDSTIASGDSAGTVTFWDSI  233 (691)
T ss_pred             EEEEEEEeecCcEEEecCCceEEEEccc
Confidence            5788888888886 77788999999853

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.62  E-value=1.8e-14  Score=118.01  Aligned_cols=160  Identities=20%  Similarity=0.243  Sum_probs=125.1

Q ss_pred             cCCCeeEEEecCC---CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          124 HDGEVNRARYMPQ---NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       124 h~~~v~~v~~~~~---~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      |......++|+-+   +.-++|+|+.-|.|+|.|+..          ......+.+|...|..+.++|..++++++||.|
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~----------~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD  157 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS----------GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD  157 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch----------hhhccceeccCccchhhhcCCCCCcEEEEecCC
Confidence            5666667777653   235889999999999999987          344667889999999999999999999999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEee---ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC--------------
Q 020480          201 AQICLWDINAAPKNKSLEAMQIF---KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS--------------  263 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~--------------  263 (325)
                      .+|++|++++.      .++..+   .+|...|.++.|++++ ..|++||.|.+|++|++...+..              
T Consensus       158 ~svRlwnI~~~------~Cv~VfGG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t  230 (385)
T KOG1034|consen  158 HSVRLWNIQTD------VCVAVFGGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKT  230 (385)
T ss_pred             ceEEEEeccCC------eEEEEecccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCc
Confidence            99999999987      455554   5799999999999998 59999999999999999842210              


Q ss_pred             ----------CCee-EeeccCCCeeEEEeCCCCCccCCCCceEEeeec
Q 020480          264 ----------KPVQ-SVVAHQSEVGVSILNASFRLSHEDTCTCTHRHS  300 (325)
Q Consensus       264 ----------~~~~-~~~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~  300 (325)
                                -|.. +-..|...|-|+.|--+-.++-|.++.+..|.-
T Consensus       231 ~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~p  278 (385)
T KOG1034|consen  231 TRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKP  278 (385)
T ss_pred             cCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEec
Confidence                      0111 223577777777777666666666777777754

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.62  E-value=1.3e-14  Score=129.27  Aligned_cols=164  Identities=18%  Similarity=0.208  Sum_probs=127.8

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCC-----eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeE
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSA-----EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL  194 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  194 (325)
                      +.++|...|.+++.+|.+ +++|+++...     .|++|+...          ...+..+.+|+-.|+.++|+|++. +|
T Consensus       520 KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~----------W~~~~~L~~HsLTVT~l~FSpdg~-~L  587 (764)
T KOG1063|consen  520 KLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTAN----------WLQVQELEGHSLTVTRLAFSPDGR-YL  587 (764)
T ss_pred             HhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccc----------hhhhheecccceEEEEEEECCCCc-EE
Confidence            567899999999999998 7999987654     588999877          555667999999999999999999 89


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCee--Eeecc
Q 020480          195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ--SVVAH  272 (325)
Q Consensus       195 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~h  272 (325)
                      ++++.|.++.+|.........  ......+.|+.-|++..|+|++ .+|||+|.|.+|++|....... +.+.  ....+
T Consensus       588 LsvsRDRt~sl~~~~~~~~~e--~~fa~~k~HtRIIWdcsW~pde-~~FaTaSRDK~VkVW~~~~~~d-~~i~~~a~~~~  663 (764)
T KOG1063|consen  588 LSVSRDRTVSLYEVQEDIKDE--FRFACLKAHTRIIWDCSWSPDE-KYFATASRDKKVKVWEEPDLRD-KYISRFACLKF  663 (764)
T ss_pred             EEeecCceEEeeeeecccchh--hhhccccccceEEEEcccCccc-ceeEEecCCceEEEEeccCchh-hhhhhhchhcc
Confidence            999999999999986543211  1123367899999999999996 6799999999999999887731 1122  23457


Q ss_pred             CCCeeEEEeCCCCCc-------cCCCCceEEeee
Q 020480          273 QSEVGVSILNASFRL-------SHEDTCTCTHRH  299 (325)
Q Consensus       273 ~~~v~~i~~~p~~~~-------~~~~d~~~~~~~  299 (325)
                      ..+|++++|.|--..       .|-..|.+.+|.
T Consensus       664 ~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~  697 (764)
T KOG1063|consen  664 SLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR  697 (764)
T ss_pred             CCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence            889999999884322       344445555554

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.62  E-value=1e-14  Score=126.39  Aligned_cols=148  Identities=18%  Similarity=0.246  Sum_probs=117.7

Q ss_pred             CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC------------------CCCCCCCcEEEecCCCceEEEEe
Q 020480          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP------------------LDGACSPDLRLRGHSTEGYGLSW  186 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~------------------~~~~~~~~~~~~~h~~~v~~l~~  186 (325)
                      +..|+|+.|-|-+..+++++-.+|.+++||.........                  ......|+..+.--.+.|..++|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            478999999998878899999999999998744322111                  01112444444444568899999


Q ss_pred             cCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCe
Q 020480          187 SKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV  266 (325)
Q Consensus       187 ~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  266 (325)
                      +|++. +||+.+.||.+||||..+..      .+..++..-+...|++|+|+| .+|++|+.|..|.||.+...+.   +
T Consensus       299 S~DG~-~LA~VSqDGfLRvF~fdt~e------Llg~mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~erRV---V  367 (636)
T KOG2394|consen  299 SPDGK-YLATVSQDGFLRIFDFDTQE------LLGVMKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEERRV---V  367 (636)
T ss_pred             cCCCc-eEEEEecCceEEEeeccHHH------HHHHHHhhccceEEEEEcCCc-cEEEecCCcceEEEEEeccceE---E
Confidence            99999 89999999999999998752      344445555789999999998 6999999999999999998884   7


Q ss_pred             eEeeccCCCeeEEEeCC
Q 020480          267 QSVVAHQSEVGVSILNA  283 (325)
Q Consensus       267 ~~~~~h~~~v~~i~~~p  283 (325)
                      ..-++|+++|+.|+|+|
T Consensus       368 ARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  368 ARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EeccccccceeeEeecc
Confidence            77799999999999994

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.61  E-value=2.2e-14  Score=117.29  Aligned_cols=182  Identities=17%  Similarity=0.248  Sum_probs=132.6

Q ss_pred             CCCCCCCCCCceEEE-EEeccCC---CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-----
Q 020480          105 DFGGFGCANGKVQII-QQINHDG---EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-----  175 (325)
Q Consensus       105 ~~~~~~~~~~~~~~~-~~~~h~~---~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-----  175 (325)
                      -+..|+.-+++++.. +-+.|..   +..+++|+|+|. .|.+ +....|++||+...       ++..++....     
T Consensus       134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlfa-GykrcirvFdt~Rp-------Gr~c~vy~t~~~~k~  204 (406)
T KOG2919|consen  134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLFA-GYKRCIRVFDTSRP-------GRDCPVYTTVTKGKF  204 (406)
T ss_pred             ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEee-cccceEEEeeccCC-------CCCCcchhhhhcccc
Confidence            344555555555443 2233543   446799999994 5555 56789999999542       2223333222     


Q ss_pred             cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe-cCCcEEE
Q 020480          176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DDQYLLI  254 (325)
Q Consensus       176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~-~dg~i~i  254 (325)
                      +..+-+.+++|+|.....++.|+....+-|+.-...      .++..+.+|.+.|+.++|+++|. .|.+|+ .|..|..
T Consensus       205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~------~pl~llggh~gGvThL~~~edGn-~lfsGaRk~dkIl~  277 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR------RPLQLLGGHGGGVTHLQWCEDGN-KLFSGARKDDKILC  277 (406)
T ss_pred             cccceeeeeeccCCCCcceeeecccceeeeEecCCC------CceeeecccCCCeeeEEeccCcC-eecccccCCCeEEE
Confidence            336778999999998888999999988888876655      56778889999999999999985 555666 6888999


Q ss_pred             EEccCCCCCCCeeEeeccCC-CeeEEEe--CCCCCc--cCCCCceEEeeecceee
Q 020480          255 WDLRTPSVSKPVQSVVAHQS-EVGVSIL--NASFRL--SHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       255 wd~~~~~~~~~~~~~~~h~~-~v~~i~~--~p~~~~--~~~~d~~~~~~~~~~~~  304 (325)
                      ||+|....  ++..+.+|.. .-..|-|  .|.+++  +|+.||.+++|++....
T Consensus       278 WDiR~~~~--pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g  330 (406)
T KOG2919|consen  278 WDIRYSRD--PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG  330 (406)
T ss_pred             Eeehhccc--hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence            99998876  7888888876 4445666  477776  67789999999987643

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.61  E-value=1.4e-14  Score=121.57  Aligned_cols=164  Identities=15%  Similarity=0.195  Sum_probs=129.0

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      ...+|..+.|.+...+.+|+|+.|..|++|.+........ .........+..|..+|..+.|+|+|. +|+||+.+|.|
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v   89 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-DMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEV   89 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-ceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceE
Confidence            4568999999987756999999999999999876332210 012233456778999999999999999 99999999999


Q ss_pred             EEEeCCCCCC----------CCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC
Q 020480          204 CLWDINAAPK----------NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ  273 (325)
Q Consensus       204 ~iwd~~~~~~----------~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~  273 (325)
                      .+|.......          ...........+|...|+.++|+|++ +++++++.|.++++||+..+..   ...+..|.
T Consensus        90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l---~~~~~dh~  165 (434)
T KOG1009|consen   90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQL---LAILDDHE  165 (434)
T ss_pred             EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEecccee---Eeeccccc
Confidence            9997661100          11112345567899999999999997 7999999999999999999984   77888999


Q ss_pred             CCeeEEEeCCCCCc--cCCCCc
Q 020480          274 SEVGVSILNASFRL--SHEDTC  293 (325)
Q Consensus       274 ~~v~~i~~~p~~~~--~~~~d~  293 (325)
                      .-+..++|.|-+++  +-+.|.
T Consensus       166 ~yvqgvawDpl~qyv~s~s~dr  187 (434)
T KOG1009|consen  166 HYVQGVAWDPLNQYVASKSSDR  187 (434)
T ss_pred             cccceeecchhhhhhhhhccCc
Confidence            99999999998885  334444

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=7.9e-15  Score=127.48  Aligned_cols=178  Identities=19%  Similarity=0.247  Sum_probs=138.7

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ecCCCceEEEEecCCC-CCeEEEEe
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RGHSTEGYGLSWSKFK-EGHLLSGS  198 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~-~~~l~s~s  198 (325)
                      ..+|+|.|+|+.|+.+| .+|++|+.|-.+.|||.-.          .++++.+ .+|+..|.++.|-|.. ..+++||.
T Consensus        46 L~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~----------~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA  114 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFE----------YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA  114 (758)
T ss_pred             hccccceecceeecCCC-CEEeecCCcceEEeecchh----------cceeeeeecccccceeEEeeeccCCCeEEEecc
Confidence            45799999999999999 7999999999999999876          4555554 5899999999999853 34789999


Q ss_pred             CCCcEEEEeCCCCCCC----CcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeE------
Q 020480          199 DDAQICLWDINAAPKN----KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS------  268 (325)
Q Consensus       199 ~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------  268 (325)
                      .|..|+++|+...+..    ......+.+..|...|..++-.|.+++.|-+++.||+++-+|+|......+-..      
T Consensus       115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~  194 (758)
T KOG1310|consen  115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV  194 (758)
T ss_pred             CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence            9999999999864322    122356667889999999999999999999999999999999997542112111      


Q ss_pred             -eeccCCCeeEEEeCCCCC---ccCCCCceEEeeecceeeeccCe
Q 020480          269 -VVAHQSEVGVSILNASFR---LSHEDTCTCTHRHSRYLLYKFPF  309 (325)
Q Consensus       269 -~~~h~~~v~~i~~~p~~~---~~~~~d~~~~~~~~~~~~~~~~~  309 (325)
                       +...--...|+..+|...   +.|+.|-.++++|.|..+-.++.
T Consensus       195 ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s  239 (758)
T KOG1310|consen  195 NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRS  239 (758)
T ss_pred             HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCC
Confidence             111223567889999766   38899999999997766544443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.60  E-value=7.1e-14  Score=114.15  Aligned_cols=211  Identities=16%  Similarity=0.166  Sum_probs=154.8

Q ss_pred             cCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceE
Q 020480           38 HALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQ  117 (325)
Q Consensus        38 ~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (325)
                      |...-|+++.+|.++..          .++++.+     ++.+.|++..-.                        +.-..
T Consensus         7 ~~~~~pitchAwn~drt----------~iAv~~~-----~~evhiy~~~~~------------------------~~w~~   47 (361)
T KOG1523|consen    7 HRLLEPITCHAWNSDRT----------QIAVSPN-----NHEVHIYSMLGA------------------------DLWEP   47 (361)
T ss_pred             eeccCceeeeeecCCCc----------eEEeccC-----CceEEEEEecCC------------------------CCcee
Confidence            33455788999999875          4545443     246778876411                        11112


Q ss_pred             EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480          118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (325)
Q Consensus       118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  197 (325)
                      ......|...|+.|+|+|.. +.|++|+.|..-+||....       ++..++...+..+..+++++.|+|.++ .|++|
T Consensus        48 ~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~-------~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVg  118 (361)
T KOG1523|consen   48 AHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPS-------GGTWKPTLVLLRINRAATCVKWSPKEN-KFAVG  118 (361)
T ss_pred             ceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCC-------CCeeccceeEEEeccceeeEeecCcCc-eEEec
Confidence            22344699999999999987 6899999999999999843       267888888889999999999999988 99999


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC--------------
Q 020480          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS--------------  263 (325)
Q Consensus       198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~--------------  263 (325)
                      +....|.||-++....-+  ...+.-+.+.+.|.+++|+|++ -++++|+.|+..|||..--....              
T Consensus       119 Sgar~isVcy~E~ENdWW--VsKhikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PF  195 (361)
T KOG1523|consen  119 SGARLISVCYYEQENDWW--VSKHIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPF  195 (361)
T ss_pred             cCccEEEEEEEeccccee--hhhhhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcH
Confidence            999999999887643211  1233446678899999999986 69999999999999976432110              


Q ss_pred             -CCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeee
Q 020480          264 -KPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRH  299 (325)
Q Consensus       264 -~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~  299 (325)
                       +.+..+....+.|..+.|+|+|..  -.+.|.++.+-+
T Consensus       196 G~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d  234 (361)
T KOG1523|consen  196 GQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD  234 (361)
T ss_pred             HHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence             112222345678999999999874  456677776643

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=3.6e-14  Score=120.94  Aligned_cols=169  Identities=12%  Similarity=0.130  Sum_probs=125.4

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-CCceEEEEecCCCCCeEEEEe
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-STEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      ..+...+.|..++|+.++ +.|.+++.+|.|.+||++.          ...++++... .-..++++.++++. +||+|+
T Consensus       339 ~s~KieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~----------~~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS  406 (514)
T KOG2055|consen  339 TSFKIEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQ----------NSCLHRFVDDGSVHGTSLCISLNGS-YLATGS  406 (514)
T ss_pred             heeeeccEEeeEEEecCC-cEEEEEcCCceEEEEecCC----------cceEEEEeecCccceeeeeecCCCc-eEEecc
Confidence            344567889999999888 5666667899999999997          2335555422 12346788889998 999999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe--cCCcEEEEEccCCCCCCCeeEeeccCCCe
Q 020480          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG--DDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (325)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  276 (325)
                      ..|.|.|||.+........+|+..+..-...|++++|+|+. .+||.||  .+..+|+-.+.+.......-.....-+.|
T Consensus       407 ~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~v  485 (514)
T KOG2055|consen  407 DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHV  485 (514)
T ss_pred             CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccceeeeccCCCCCCcccce
Confidence            99999999987765555557787887788899999999997 5776665  57789998887755311111112234569


Q ss_pred             eEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          277 GVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       277 ~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      +|++|+|+|-+  .|...+.+.+|.+.
T Consensus       486 tc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  486 TCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             EEEEecCCCceEEeecCCCceeeEeec
Confidence            99999997664  78888899888764

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=2.3e-13  Score=111.17  Aligned_cols=123  Identities=12%  Similarity=0.167  Sum_probs=97.9

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      .|+-.|-.+-....+ .+|++++.|..|.+|++..           +.+..+......-+..+.+|+|+ ++++++..--
T Consensus       185 kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lkG-----------q~L~~idtnq~~n~~aavSP~GR-Fia~~gFTpD  251 (420)
T KOG2096|consen  185 KHQVDIINIGIAGNA-KYIMSASLDTKICLWDLKG-----------QLLQSIDTNQSSNYDAAVSPDGR-FIAVSGFTPD  251 (420)
T ss_pred             hcccceEEEeecCCc-eEEEEecCCCcEEEEecCC-----------ceeeeeccccccccceeeCCCCc-EEEEecCCCC
Confidence            355566666665544 8999999999999999986           33555555566677889999999 8999999999


Q ss_pred             EEEEeCCCCCCC--CcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480          203 ICLWDINAAPKN--KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (325)
Q Consensus       203 i~iwd~~~~~~~--~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~  259 (325)
                      |++|.+--.+.+  +....+..+.+|.+.|..++|+++. ..+++.+.||+++|||+.-
T Consensus       252 VkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  252 VKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             ceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-ceeEEEecCCcEEEeeccc
Confidence            999987554433  3334566789999999999999986 7889999999999999853

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.59  E-value=9.5e-15  Score=129.01  Aligned_cols=149  Identities=18%  Similarity=0.281  Sum_probs=120.3

Q ss_pred             EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCC-CcccceEe
Q 020480          144 KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQI  222 (325)
Q Consensus       144 g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~  222 (325)
                      .+..|.|-||+++.......  +   .+-.+ -....|+++.|.|-....|+.++.||.|++|.+..+... ....+...
T Consensus       599 ~g~gG~iai~el~~PGrLPD--g---v~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~  672 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPD--G---VMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKI  672 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCc--c---ccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCccee
Confidence            45578999999987432211  1   11112 234679999999988889999999999999998765432 23356777


Q ss_pred             eecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480          223 FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       223 ~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                      +.+|...|+++.|||-...+|++++.|-+|++||+++...   ...+.+|++.|.+++|+|+|+.  +.+.|++++++.-
T Consensus       673 lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~---~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P  749 (1012)
T KOG1445|consen  673 LTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL---YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP  749 (1012)
T ss_pred             eecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh---hheeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence            8999999999999998888999999999999999999884   6788999999999999999996  7789999999754


Q ss_pred             c
Q 020480          301 R  301 (325)
Q Consensus       301 ~  301 (325)
                      +
T Consensus       750 r  750 (1012)
T KOG1445|consen  750 R  750 (1012)
T ss_pred             C
Confidence            3

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=4.9e-14  Score=122.90  Aligned_cols=180  Identities=17%  Similarity=0.180  Sum_probs=137.3

Q ss_pred             EEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEE
Q 020480          117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (325)
Q Consensus       117 ~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  196 (325)
                      .+....+|.++|.|+++.+.+ ..+.+|+.||+|+.|++..................+.||++.|+.+++++... .|++
T Consensus       336 pi~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Lls  413 (577)
T KOG0642|consen  336 PILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLS  413 (577)
T ss_pred             eeEEEecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceee
Confidence            445567899999999999988 79999999999999988732221111111233456889999999999999887 7999


Q ss_pred             EeCCCcEEEEeCCCCCCC-----C-------------c--------------------ccceEeee-------cCCccEE
Q 020480          197 GSDDAQICLWDINAAPKN-----K-------------S--------------------LEAMQIFK-------VHEGVVE  231 (325)
Q Consensus       197 ~s~dg~i~iwd~~~~~~~-----~-------------~--------------------~~~~~~~~-------~~~~~v~  231 (325)
                      |+.||++++|+.......     +             .                    ...+..+.       .....++
T Consensus       414 cs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in  493 (577)
T KOG0642|consen  414 CSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN  493 (577)
T ss_pred             ecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc
Confidence            999999999987654320     0             0                    00000110       0124577


Q ss_pred             EEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          232 DVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       232 ~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      .+.++|.+ .+.+++..|+.|+++|..++.   +++...+|...++++++.|+|.+  +++.|+.+++|.+..
T Consensus       494 ~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~---~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  494 KVVSHPTA-DITFTAHEDRSIRFFDNKTGK---ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             eEEecCCC-CeeEecccCCceecccccccc---cchheeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence            88899987 477899999999999999998   58888999999999999999985  899999999997643

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=2.4e-14  Score=127.20  Aligned_cols=263  Identities=13%  Similarity=0.110  Sum_probs=171.7

Q ss_pred             HHHHhhhHhcC-hhHHHHhhhcCCCCCceEEEEeeCCCCCC---CCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480           18 NEEYKIWKKNT-PFLYDLVITHALEWPSLTVEWLPDREEPP---GKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE   93 (325)
Q Consensus        18 ~~~~~iw~~~~-~~~y~~~~~~~~~~p~~s~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~   93 (325)
                      +..|.||+... .++-.+++... .-.+-+++|.+.+...+   +.......+..+.+-..-..+...||.+.+......
T Consensus        46 ~g~IEiwN~~~~w~~~~vi~g~~-drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~  124 (691)
T KOG2048|consen   46 DGNIEIWNLSNNWFLEPVIHGPE-DRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTI  124 (691)
T ss_pred             CCcEEEEccCCCceeeEEEecCC-CCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccce
Confidence            45688998855 44445555543 33677999996543221   111111222222221112223345677665433333


Q ss_pred             cccCCCCcccCCCCCCCCCCCceEEEEEec-cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE
Q 020480           94 NDARHYDDDRSDFGGFGCANGKVQIIQQIN-HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL  172 (325)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~  172 (325)
                      +...+.+.   -+..+.....+++..+.+. .++.|.++.|+|++ ..+|+|+.||.|++||...+.        ...+.
T Consensus       125 l~IgcddG---vl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~--------t~~~~  192 (691)
T KOG2048|consen  125 LAIGCDDG---VLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQ--------TLHII  192 (691)
T ss_pred             EEeecCCc---eEEEEecCCceEEEEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCc--------eEEEe
Confidence            33332221   2233333445666655555 45999999999999 689999999999999998721        11111


Q ss_pred             E--Ee----cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEE
Q 020480          173 R--LR----GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV  246 (325)
Q Consensus       173 ~--~~----~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~  246 (325)
                      +  +.    +..--|+++.+-.++  .+++|...|+|.+||...+      ..++.+..|...|.+++-.+++ ..+.++
T Consensus       193 ~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~g------TLiqS~~~h~adVl~Lav~~~~-d~vfsa  263 (691)
T KOG2048|consen  193 TMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFG------TLIQSHSCHDADVLALAVADNE-DRVFSA  263 (691)
T ss_pred             eecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCc------chhhhhhhhhcceeEEEEcCCC-CeEEEc
Confidence            1  11    122347888887665  5999999999999999988      4577788899999999999886 578899


Q ss_pred             ecCCcEEEEEccCCCC-CCCeeEeeccCCCeeEEEeCCCCCccCCCCceEEeeecce
Q 020480          247 GDDQYLLIWDLRTPSV-SKPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHSRY  302 (325)
Q Consensus       247 ~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~~~  302 (325)
                      |.|+.|--|...+... +........|...|.+++..++-.++||.|.++.+-..+.
T Consensus       264 Gvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  264 GVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSRE  320 (691)
T ss_pred             cCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccc
Confidence            9999988888776643 1122333678889999999999777999999988865554

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=4.3e-14  Score=116.29  Aligned_cols=147  Identities=15%  Similarity=0.217  Sum_probs=115.9

Q ss_pred             cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCC-CCCeEEEEeCCCcEEEEeCCCCCCCCcc
Q 020480          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF-KEGHLLSGSDDAQICLWDINAAPKNKSL  217 (325)
Q Consensus       139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~  217 (325)
                      +.+|++...|.|++||..+          ...+..+.++...+..+.|... +...+.+|+.||+|++||+|...+    
T Consensus        41 ~~vav~lSngsv~lyd~~t----------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e----  106 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGT----------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE----  106 (376)
T ss_pred             eeEEEEecCCeEEEEeccc----------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh----
Confidence            5789999999999999987          4557778888888888888664 556899999999999999998765    


Q ss_pred             cceEeeecCC-ccEEEEEeecCCCcEEEEEe----cCCcEEEEEccCCCCCCCeeEe-eccCCCeeEEEeCCCCC---cc
Q 020480          218 EAMQIFKVHE-GVVEDVAWHLRHEYLFGSVG----DDQYLLIWDLRTPSVSKPVQSV-VAHQSEVGVSILNASFR---LS  288 (325)
Q Consensus       218 ~~~~~~~~~~-~~v~~v~~~p~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~i~~~p~~~---~~  288 (325)
                      .+...+..+. .+..+++.+-.+ +++++|.    .+-.|.+||+|..+.  ++..+ ..|...|++|.|+|+..   ++
T Consensus       107 ~a~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq--~l~~~~eSH~DDVT~lrFHP~~pnlLlS  183 (376)
T KOG1188|consen  107 SARISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQ--LLRQLNESHNDDVTQLRFHPSDPNLLLS  183 (376)
T ss_pred             hhheeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccc--hhhhhhhhccCcceeEEecCCCCCeEEe
Confidence            3444556665 355566655443 6787775    577899999999875  45554 68999999999999765   49


Q ss_pred             CCCCceEEeeecce
Q 020480          289 HEDTCTCTHRHSRY  302 (325)
Q Consensus       289 ~~~d~~~~~~~~~~  302 (325)
                      ||-||.+.++++..
T Consensus       184 GSvDGLvnlfD~~~  197 (376)
T KOG1188|consen  184 GSVDGLVNLFDTKK  197 (376)
T ss_pred             ecccceEEeeecCC
Confidence            99999999988754

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=7.1e-14  Score=110.14  Aligned_cols=168  Identities=15%  Similarity=0.133  Sum_probs=124.5

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEE
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW  206 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iw  206 (325)
                      .|.+-+++|.+ ++|++|..+|.|.++.+.+............++...++|.++++.++|..  . +|++|+ ||.|+-|
T Consensus        12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~-~Lls~g-dG~V~gw   86 (325)
T KOG0649|consen   12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--D-FLLSGG-DGLVYGW   86 (325)
T ss_pred             HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--h-heeecc-CceEEEe
Confidence            45666889988 79999999999999999875443322223345666789999999999983  3 677766 5999999


Q ss_pred             eCCCCCCCCcccceEeee-------cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480          207 DINAAPKNKSLEAMQIFK-------VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS  279 (325)
Q Consensus       207 d~~~~~~~~~~~~~~~~~-------~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i  279 (325)
                      .-+...+....+++....       -.-..|+++...|.. +-++.++.|+.++-||+.+++-   ..++.+|++-|.++
T Consensus        87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i---~r~~rGHtDYvH~v  162 (325)
T KOG0649|consen   87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRI---QREYRGHTDYVHSV  162 (325)
T ss_pred             eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEE---EEEEcCCcceeeee
Confidence            876544321111111111       112468999999976 4555666899999999999984   67789999999999


Q ss_pred             Ee-CCCCCc-cCCCCceEEeeeccee
Q 020480          280 IL-NASFRL-SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       280 ~~-~p~~~~-~~~~d~~~~~~~~~~~  303 (325)
                      +- +.++++ +|+.||++|+|+.+..
T Consensus       163 v~R~~~~qilsG~EDGtvRvWd~kt~  188 (325)
T KOG0649|consen  163 VGRNANGQILSGAEDGTVRVWDTKTQ  188 (325)
T ss_pred             eecccCcceeecCCCccEEEEecccc
Confidence            98 667775 9999999999998764

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.55  E-value=1.7e-13  Score=124.52  Aligned_cols=156  Identities=17%  Similarity=0.179  Sum_probs=125.2

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ...|.++|+.++...-+ +.+++++.+|.+.+||...          ......+. -...+..+..+.... +++.+..|
T Consensus       489 ~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~----------k~l~~~l~-l~~~~~~iv~hr~s~-l~a~~~dd  555 (910)
T KOG1539|consen  489 SPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKK----------KVLKKSLR-LGSSITGIVYHRVSD-LLAIALDD  555 (910)
T ss_pred             CccccCceeEEEecCCC-ceEEEccCcceEEEEecCC----------cceeeeec-cCCCcceeeeeehhh-hhhhhcCc
Confidence            35799999999999887 6899999999999999987          22333333 334567777777766 89999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      -.|+++|+.+.      ..++.|.+|++.|++++|||+| ..+++++.|++||+||+.++..   +-.+ .-..++.++.
T Consensus       556 f~I~vvD~~t~------kvvR~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~l---ID~~-~vd~~~~sls  624 (910)
T KOG1539|consen  556 FSIRVVDVVTR------KVVREFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTGTL---IDGL-LVDSPCTSLS  624 (910)
T ss_pred             eeEEEEEchhh------hhhHHhhccccceeeeEeCCCC-cEEEEeecCCcEEEEeccCcce---eeeE-ecCCcceeeE
Confidence            99999999876      4578899999999999999998 6999999999999999999884   4443 3578899999


Q ss_pred             eCCCCCc--cCCCC-ceEEeeec
Q 020480          281 LNASFRL--SHEDT-CTCTHRHS  300 (325)
Q Consensus       281 ~~p~~~~--~~~~d-~~~~~~~~  300 (325)
                      |+|+|.+  +...| ..+.+|..
T Consensus       625 ~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  625 FSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             ECCCCCEEEEEEecCceEEEEEc
Confidence            9999996  22222 45666643

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.55  E-value=2.6e-14  Score=127.81  Aligned_cols=162  Identities=18%  Similarity=0.163  Sum_probs=122.8

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCC--CCCeEEEEeC
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF--KEGHLLSGSD  199 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~~l~s~s~  199 (325)
                      ....-.+.+++.+|++ ..||+|..-|+++||++.+          ......+..|.++|.++.++..  +..+|++++.
T Consensus       456 ~d~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~----------l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr  524 (1080)
T KOG1408|consen  456 CDSRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQE----------LEYTCFMEAHESEILCLEYSFPVLTNKLLASASR  524 (1080)
T ss_pred             cCcccceEEEEECCCc-ceecccCccCceEEEEehh----------hhhhhheecccceeEEEeecCchhhhHhhhhccC
Confidence            3456689999999999 7999999999999999987          4556678899999999999753  2348999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCc-------------------------------------------------cE
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEG-------------------------------------------------VV  230 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------~v  230 (325)
                      |..|+|||+...-     .+++++.+|++                                                 .+
T Consensus       525 dRlIHV~Dv~rny-----~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTl  599 (1080)
T KOG1408|consen  525 DRLIHVYDVKRNY-----DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTL  599 (1080)
T ss_pred             CceEEEEeccccc-----chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceE
Confidence            9999999986531     22333333333                                                 34


Q ss_pred             EEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480          231 EDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       231 ~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                      ++++..|.. .++++++.|..|+|||+.+++..+....-..|.+..-.+...|.|.+  +...|.++.++|.
T Consensus       600 YDm~Vdp~~-k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df  670 (1080)
T KOG1408|consen  600 YDMAVDPTS-KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF  670 (1080)
T ss_pred             EEeeeCCCc-ceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEe
Confidence            555555553 58899999999999999999963333333557778888999999986  4456777777664

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=1.1e-13  Score=116.90  Aligned_cols=155  Identities=15%  Similarity=0.102  Sum_probs=119.1

Q ss_pred             eEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeC
Q 020480          129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI  208 (325)
Q Consensus       129 ~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~  208 (325)
                      .+++|+.+| ..+++|+.||.+|+|+++.          ..++.....|...|.+++|+|++. +|++-+.| ..+||++
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps----------~~t~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~  214 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWPS----------MLTILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSV  214 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecCc----------chhhhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEe
Confidence            678999998 6999999999999999876          455666778999999999999999 89999999 9999999


Q ss_pred             CCCCCCCc-----------------------ccc---------eEe-----e-----------ecCCccEEEEEeecCCC
Q 020480          209 NAAPKNKS-----------------------LEA---------MQI-----F-----------KVHEGVVEDVAWHLRHE  240 (325)
Q Consensus       209 ~~~~~~~~-----------------------~~~---------~~~-----~-----------~~~~~~v~~v~~~p~~~  240 (325)
                      +++.....                       +.+         +..     .           ......|.+++.+++| 
T Consensus       215 ~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG-  293 (398)
T KOG0771|consen  215 NTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG-  293 (398)
T ss_pred             ccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC-
Confidence            88721100                       000         000     0           0012368899999987 


Q ss_pred             cEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeee
Q 020480          241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRH  299 (325)
Q Consensus       241 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~  299 (325)
                      .++|.|+.||.|-|++....+.  ....-+.|...|+.+.|+|+.+.  +.+.+....+-.
T Consensus       294 kf~AlGT~dGsVai~~~~~lq~--~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~  352 (398)
T KOG0771|consen  294 KFLALGTMDGSVAIYDAKSLQR--LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK  352 (398)
T ss_pred             cEEEEeccCCcEEEEEeceeee--eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence            7999999999999999998875  23334789999999999998774  445555555543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.54  E-value=2.2e-13  Score=123.68  Aligned_cols=189  Identities=19%  Similarity=0.190  Sum_probs=139.2

Q ss_pred             CCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEec
Q 020480          108 GFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS  187 (325)
Q Consensus       108 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  187 (325)
                      .|+...+ ......+.-+..|.++.|+|..++++|.|+.+|+|.+||++......    ..........|..+++.+.|-
T Consensus       226 vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~----~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  226 VWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP----PSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             EEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC----CcccccccccCCcCeEEEEEe
Confidence            3444444 33334567789999999999999999999999999999998733211    011112234688999999996


Q ss_pred             CCCC-CeEEEEeCCCcEEEEeCCCCCCC----------------------------------------------------
Q 020480          188 KFKE-GHLLSGSDDAQICLWDINAAPKN----------------------------------------------------  214 (325)
Q Consensus       188 p~~~-~~l~s~s~dg~i~iwd~~~~~~~----------------------------------------------------  214 (325)
                      .+.. .-|++++.||.|..|+++.....                                                    
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            5433 24999999999999987654210                                                    


Q ss_pred             -Ccc----cceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC---
Q 020480          215 -KSL----EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR---  286 (325)
Q Consensus       215 -~~~----~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~---  286 (325)
                       ...    +....+..|.+.|+++.++|-+..+|.+++ |.+++||.......  |+..+..+...|++++|||...   
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~--Pl~~~~~~~~~v~~vaWSptrpavF  457 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS--PLLSLDSSPDYVTDVAWSPTRPAVF  457 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCC--cchhhhhccceeeeeEEcCcCceEE
Confidence             000    112244567789999999998877777777 99999999884443  7888888888999999999776   


Q ss_pred             ccCCCCceEEeeecceee
Q 020480          287 LSHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       287 ~~~~~d~~~~~~~~~~~~  304 (325)
                      +++..||.+-+||+..-.
T Consensus       458 ~~~d~~G~l~iWDLl~~~  475 (555)
T KOG1587|consen  458 ATVDGDGNLDIWDLLQDD  475 (555)
T ss_pred             EEEcCCCceehhhhhccc
Confidence            277889999999986644

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.54  E-value=2.8e-13  Score=116.85  Aligned_cols=223  Identities=17%  Similarity=0.255  Sum_probs=154.1

Q ss_pred             HHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccC
Q 020480           18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDAR   97 (325)
Q Consensus        18 ~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~   97 (325)
                      +..+++|+.+.     ........-|+.+++|.|.+           .+++|+.+.     ...+++..           
T Consensus       389 dk~v~lW~~~k-----~~wt~~~~d~~~~~~fhpsg-----------~va~Gt~~G-----~w~V~d~e-----------  436 (626)
T KOG2106|consen  389 DKHVRLWNDHK-----LEWTKIIEDPAECADFHPSG-----------VVAVGTATG-----RWFVLDTE-----------  436 (626)
T ss_pred             cceEEEccCCc-----eeEEEEecCceeEeeccCcc-----------eEEEeeccc-----eEEEEecc-----------
Confidence            45678888555     33444556688899999976           377887655     34444432           


Q ss_pred             CCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC
Q 020480           98 HYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH  177 (325)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h  177 (325)
                                     .  -..+....-..++++++|+|+| .+||.|+.|+.|++|.+....      .....+..  .|
T Consensus       437 ---------------~--~~lv~~~~d~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g------~~y~r~~k--~~  490 (626)
T KOG2106|consen  437 ---------------T--QDLVTIHTDNEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANG------RKYSRVGK--CS  490 (626)
T ss_pred             ---------------c--ceeEEEEecCCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCC------cEEEEeee--ec
Confidence                           1  1222222238899999999999 799999999999999998621      11122222  33


Q ss_pred             CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCccc--------ceE---ee-ecCCccEEEEEeecCCCcEEEE
Q 020480          178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE--------AMQ---IF-KVHEGVVEDVAWHLRHEYLFGS  245 (325)
Q Consensus       178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~---~~-~~~~~~v~~v~~~p~~~~~l~s  245 (325)
                      .++|+.++|+++++ ++.+-+.|-.|..|...........+        +.-   .+ ..+...|+.++-+... .++|+
T Consensus       491 gs~ithLDwS~Ds~-~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~-~~lA~  568 (626)
T KOG2106|consen  491 GSPITHLDWSSDSQ-FLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCE-KLLAS  568 (626)
T ss_pred             CceeEEeeecCCCc-eEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhh-hhhhc
Confidence            48999999999999 89999999999999544332211100        000   01 1244455555555544 58999


Q ss_pred             EecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC-c-cCCCCceEEeeec
Q 020480          246 VGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR-L-SHEDTCTCTHRHS  300 (325)
Q Consensus       246 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~-~-~~~~d~~~~~~~~  300 (325)
                      |.+.|+|++|.....+...+.+.+.+|.+.|.+++|.-... + +.+.|.++..|.+
T Consensus       569 gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  569 GDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             cccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            99999999999887776668889999999999999986554 3 5558888888864

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=1.2e-12  Score=103.20  Aligned_cols=178  Identities=15%  Similarity=0.154  Sum_probs=120.9

Q ss_pred             CCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCC---CCcEEEecCCCceEEEEecCC
Q 020480          113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGAC---SPDLRLRGHSTEGYGLSWSKF  189 (325)
Q Consensus       113 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~l~~~p~  189 (325)
                      .++...+...+|.++|+.++|..   .+|.+|+ ||.|+-|..++.......+..+   .|.++-...-..|.++...|.
T Consensus        50 ~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~  125 (325)
T KOG0649|consen   50 PGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS  125 (325)
T ss_pred             CCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccC
Confidence            45666676789999999999984   4677755 5999999987643322100000   111110011236789999998


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe
Q 020480          190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV  269 (325)
Q Consensus       190 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  269 (325)
                      .+ -+++++.|+.++-||++++      ...+.+++|+..|.++.--... ..+.+|+.||++|+||.++.++.+.+..+
T Consensus       126 en-Si~~AgGD~~~y~~dlE~G------~i~r~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~y  197 (325)
T KOG0649|consen  126 EN-SILFAGGDGVIYQVDLEDG------RIQREYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPY  197 (325)
T ss_pred             CC-cEEEecCCeEEEEEEecCC------EEEEEEcCCcceeeeeeecccC-cceeecCCCccEEEEeccccceeEEeccc
Confidence            88 4666679999999999998      5578899999999999874333 35679999999999999999863333222


Q ss_pred             e------cc-CCCeeEEEeCCCCCccCCCCceEEeeeccee
Q 020480          270 V------AH-QSEVGVSILNASFRLSHEDTCTCTHRHSRYL  303 (325)
Q Consensus       270 ~------~h-~~~v~~i~~~p~~~~~~~~d~~~~~~~~~~~  303 (325)
                      +      .| ...|-+++-+.+-. .++.-....+|.++..
T Consensus       198 k~~~~lRp~~g~wigala~~edWl-vCGgGp~lslwhLrss  237 (325)
T KOG0649|consen  198 KNPNLLRPDWGKWIGALAVNEDWL-VCGGGPKLSLWHLRSS  237 (325)
T ss_pred             cChhhcCcccCceeEEEeccCceE-EecCCCceeEEeccCC
Confidence            1      11 23566666665543 4555566777777653

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.53  E-value=8.7e-13  Score=119.81  Aligned_cols=249  Identities=17%  Similarity=0.165  Sum_probs=165.9

Q ss_pred             hhHHHHhhhHhcChhH--H--HHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCC
Q 020480           16 LINEEYKIWKKNTPFL--Y--DLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDD   91 (325)
Q Consensus        16 ~~~~~~~iw~~~~~~~--y--~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~   91 (325)
                      ..+.+|-+|+......  -  -....+...-||+.+-|..+...        ..++.++.     +..|+.|++..-...
T Consensus       262 ~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~--------~~f~s~ss-----DG~i~~W~~~~l~~P  328 (555)
T KOG1587|consen  262 CYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHN--------TEFFSLSS-----DGSICSWDTDMLSLP  328 (555)
T ss_pred             ccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCC--------CceEEEec-----CCcEeeeeccccccc
Confidence            3556677777766433  1  12333444568999999996542        12322222     236777755422111


Q ss_pred             CCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCc
Q 020480           92 SENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPD  171 (325)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~  171 (325)
                      .+....               +...+......-...+++++|.+..++.|++|+..|.|.--+.........  ...++.
T Consensus       329 ~e~~~~---------------~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~--~~~~~~  391 (555)
T KOG1587|consen  329 VEGLLL---------------ESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE--VSYKGH  391 (555)
T ss_pred             hhhccc---------------ccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc--cccccc
Confidence            111000               011111112234467889999999989999999999998744333110000  011334


Q ss_pred             EEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc
Q 020480          172 LRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY  251 (325)
Q Consensus       172 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~  251 (325)
                      ..+..|.++|+.+.++|-+...+++++ |.+++||......     .++..+..+...|++++|||..+.+|+++..||.
T Consensus       392 ~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~-----~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~  465 (555)
T KOG1587|consen  392 STFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA-----SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN  465 (555)
T ss_pred             ccccccCcceEeeecCCCccceeeeec-cceeEeccccCCC-----CcchhhhhccceeeeeEEcCcCceEEEEEcCCCc
Confidence            456678999999999999985555555 9999999987322     4566777788889999999999999999999999


Q ss_pred             EEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          252 LLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       252 i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      |.+||+..... .|+.+...+....+.+.|++.|++  .|...|++.++++.
T Consensus       466 l~iWDLl~~~~-~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  466 LDIWDLLQDDE-EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             eehhhhhcccc-CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            99999997663 477777767777888999998986  66777788887764

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=1.1e-12  Score=120.58  Aligned_cols=151  Identities=17%  Similarity=0.203  Sum_probs=111.0

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ...+|.++|.++.|+|.+ ++||+.+.||.|++|++.........++ ..+...+ .....+..++|+|++. .|+....
T Consensus       133 ~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~-v~k~n~~-~~s~i~~~~aW~Pk~g-~la~~~~  208 (933)
T KOG1274|consen  133 VLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTG-VDKDNEF-ILSRICTRLAWHPKGG-TLAVPPV  208 (933)
T ss_pred             eecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhccc-CCccccc-cccceeeeeeecCCCC-eEEeecc
Confidence            467899999999999998 7999999999999999987221110000 0000000 1145678899999988 6888889


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS  279 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i  279 (325)
                      |+.|++|+.........+    .-..+...+..++|+|.| .+||+++.+|.|-|||..+..    .   +.....|.++
T Consensus       209 d~~Vkvy~r~~we~~f~L----r~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~~----~---~~~~~~Vc~~  276 (933)
T KOG1274|consen  209 DNTVKVYSRKGWELQFKL----RDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTHE----R---HEFKRAVCCE  276 (933)
T ss_pred             CCeEEEEccCCceeheee----cccccccceEEEEEcCCC-cEEeeeccCCcEEEEecccch----h---ccccceeEEE
Confidence            999999998876442111    123345559999999997 699999999999999998844    1   2235679999


Q ss_pred             EeCCCCC
Q 020480          280 ILNASFR  286 (325)
Q Consensus       280 ~~~p~~~  286 (325)
                      +|.|++.
T Consensus       277 aw~p~~n  283 (933)
T KOG1274|consen  277 AWKPNAN  283 (933)
T ss_pred             ecCCCCC
Confidence            9999865

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.51  E-value=6.4e-12  Score=108.59  Aligned_cols=182  Identities=14%  Similarity=0.168  Sum_probs=130.8

Q ss_pred             CCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCC---CC-----------C----------
Q 020480          109 FGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSK---PP-----------L----------  164 (325)
Q Consensus       109 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~---~~-----------~----------  164 (325)
                      |+....++..... .|.+.|.+++...+|  .|++|+.|..|..||-.-....   ..           .          
T Consensus       272 w~~~~~~~~k~~~-aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtr  348 (626)
T KOG2106|consen  272 WSKGTNRISKQVH-AHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTR  348 (626)
T ss_pred             EeCCCceEEeEee-ecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeecc
Confidence            3333444444333 899999999999988  4666999999999983221100   00           0          


Q ss_pred             ----CCC--CCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecC
Q 020480          165 ----DGA--CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR  238 (325)
Q Consensus       165 ----~~~--~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  238 (325)
                          .+.  ........+|....+.++.+|..+ +++|++.|+.+++|+ . .      ++..+.. -..++.++.|+|.
T Consensus       349 N~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~-~-~------k~~wt~~-~~d~~~~~~fhps  418 (626)
T KOG2106|consen  349 NFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN-D-H------KLEWTKI-IEDPAECADFHPS  418 (626)
T ss_pred             ceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc-C-C------ceeEEEE-ecCceeEeeccCc
Confidence                000  001123357889999999999988 899999999999999 2 1      2333322 3467889999998


Q ss_pred             CCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecceeeeccCe
Q 020480          239 HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYLLYKFPF  309 (325)
Q Consensus       239 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~~~~~~  309 (325)
                      |  .+|.|...|...+.|..+..    +.+++....++++++|+|+|.+  .|+.|+.+.++.+..-..+|..
T Consensus       419 g--~va~Gt~~G~w~V~d~e~~~----lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r  485 (626)
T KOG2106|consen  419 G--VVAVGTATGRWFVLDTETQD----LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR  485 (626)
T ss_pred             c--eEEEeeccceEEEEecccce----eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE
Confidence            6  89999999999999999855    4444445899999999999996  7899999999866554444443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.51  E-value=2.7e-12  Score=110.52  Aligned_cols=160  Identities=8%  Similarity=-0.001  Sum_probs=108.0

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCC-eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSA-EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      .+.+...+.+++|+|++ .+++++..++ .+.+|+...          ......+. .......++|+|++..+++++..
T Consensus       110 ~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~----------~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~  177 (300)
T TIGR03866       110 EIPVGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKT----------YEIVDNVL-VDQRPRFAEFTADGKELWVSSEI  177 (300)
T ss_pred             EeeCCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCC----------CeEEEEEE-cCCCccEEEECCCCCEEEEEcCC
Confidence            33444456889999998 5777777664 567788765          12222222 22345789999999843456667


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecC-------CccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVH-------EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH  272 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h  272 (325)
                      ++.|++||++++..      +..+..+       ......++|+|++..++++.+.++.+.+||+++.+.   +..+ .+
T Consensus       178 ~~~v~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~---~~~~-~~  247 (300)
T TIGR03866       178 GGTVSVIDVATRKV------IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV---LDYL-LV  247 (300)
T ss_pred             CCEEEEEEcCccee------eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE---EEEE-Ee
Confidence            99999999987632      2222211       112346889999865556666778899999987763   3333 34


Q ss_pred             CCCeeEEEeCCCCCc--c-CCCCceEEeeecce
Q 020480          273 QSEVGVSILNASFRL--S-HEDTCTCTHRHSRY  302 (325)
Q Consensus       273 ~~~v~~i~~~p~~~~--~-~~~d~~~~~~~~~~  302 (325)
                      ...+.+++|+|+|..  + .+.++.+++|+...
T Consensus       248 ~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~  280 (300)
T TIGR03866       248 GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA  280 (300)
T ss_pred             CCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            567999999999984  3 35689999999765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.51  E-value=2.4e-13  Score=108.30  Aligned_cols=170  Identities=15%  Similarity=0.191  Sum_probs=126.0

Q ss_pred             cCCCeeEEEecCC-C-CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          124 HDGEVNRARYMPQ-N-PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       124 h~~~v~~v~~~~~-~-~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      ..+.+.+..+... + .-++++|-++|.|.+||+........-....+.......|..+|.++.+.+... .=++|+.+.
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~d  227 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADD  227 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCccc
Confidence            4577777775433 2 235677889999999999874221111122233344557999999999988766 467788888


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEe
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL  281 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~  281 (325)
                      .+..|.+........+  .....-.+..|..+..-|++ .++||++.|+.||||..|+.+   |+..++.|.+.|++++|
T Consensus       228 kl~~~Sl~~s~gslq~--~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrtl~---pLAVLkyHsagvn~vAf  301 (323)
T KOG0322|consen  228 KLVMYSLNHSTGSLQI--RKEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRTLN---PLAVLKYHSAGVNAVAF  301 (323)
T ss_pred             cceeeeeccccCcccc--cceEEecCCCccceEEccCC-cEEeecccCCcEEEEEeccCC---chhhhhhhhcceeEEEe
Confidence            8999988765332111  12223334568899999997 699999999999999999998   69999999999999999


Q ss_pred             CCCCCc--cCCCCceEEeeec
Q 020480          282 NASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       282 ~p~~~~--~~~~d~~~~~~~~  300 (325)
                      +|+..+  .++.|+++.+|++
T Consensus       302 spd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  302 SPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CCCCchhhhccCCceEEeeec
Confidence            999554  8899999999986

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.50  E-value=2.2e-13  Score=118.35  Aligned_cols=152  Identities=14%  Similarity=0.287  Sum_probs=115.0

Q ss_pred             CCCCceEEEEEe--------ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceE
Q 020480          111 CANGKVQIIQQI--------NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGY  182 (325)
Q Consensus       111 ~~~~~~~~~~~~--------~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~  182 (325)
                      ..++++.++...        .|.++|.+-+|+|+| .-|+++++||.|++|+-...           ...++.....+|.
T Consensus        82 s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsGM-----------LRStl~Q~~~~v~  149 (737)
T KOG1524|consen   82 SNDGRFVILNKSARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSGM-----------LRSTVVQNEESIR  149 (737)
T ss_pred             cCCceEEEecccchhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEeccch-----------HHHHHhhcCceeE
Confidence            356677665433        399999999999999 68889999999999997652           1222344567899


Q ss_pred             EEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC
Q 020480          183 GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV  262 (325)
Q Consensus       183 ~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  262 (325)
                      +++|.|+.+..+++.+  +.+.|=-+...      ..+-.+++|.+-|.++.|+|.. .++++|+.|-..++||..... 
T Consensus       150 c~~W~p~S~~vl~c~g--~h~~IKpL~~n------~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~~-  219 (737)
T KOG1524|consen  150 CARWAPNSNSIVFCQG--GHISIKPLAAN------SKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGAN-  219 (737)
T ss_pred             EEEECCCCCceEEecC--CeEEEeecccc------cceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCcc-
Confidence            9999999986666555  34444444433      2355678999999999999986 799999999999999987654 


Q ss_pred             CCCeeEeeccCCCeeEEEeCCCCCc
Q 020480          263 SKPVQSVVAHQSEVGVSILNASFRL  287 (325)
Q Consensus       263 ~~~~~~~~~h~~~v~~i~~~p~~~~  287 (325)
                         +.....|.-+|++++|+|+..+
T Consensus       220 ---Lf~S~~~ey~ITSva~npd~~~  241 (737)
T KOG1524|consen  220 ---LFTSAAEEYAITSVAFNPEKDY  241 (737)
T ss_pred             ---cccCChhccceeeeeeccccce
Confidence               5555678888888888888443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.50  E-value=4.2e-13  Score=122.04  Aligned_cols=169  Identities=16%  Similarity=0.130  Sum_probs=136.9

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE---ecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL---RGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      ..+++++.++.| ++.+.|...|.|-+|++.+        +..  ..++   ..|.++|++++....++ .+++++.+|.
T Consensus       449 ~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQS--------Gi~--r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gi  516 (910)
T KOG1539|consen  449 INATAVCVSFCG-NFVFIGYSKGTIDRFNMQS--------GIH--RKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGI  516 (910)
T ss_pred             cceEEEEEeccC-ceEEEeccCCeEEEEEccc--------Cee--ecccccCccccCceeEEEecCCCc-eEEEccCcce
Confidence            678899999988 7999999999999999987        322  3334   57999999999998887 8999999999


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeC
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN  282 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~  282 (325)
                      ++.||.....      ++..+. -...+.++..+... .++|.+..|-.|+++|..+.+.   +..+.+|+..|++++||
T Consensus       517 lkfw~f~~k~------l~~~l~-l~~~~~~iv~hr~s-~l~a~~~ddf~I~vvD~~t~kv---vR~f~gh~nritd~~FS  585 (910)
T KOG1539|consen  517 LKFWDFKKKV------LKKSLR-LGSSITGIVYHRVS-DLLAIALDDFSIRVVDVVTRKV---VREFWGHGNRITDMTFS  585 (910)
T ss_pred             EEEEecCCcc------eeeeec-cCCCcceeeeeehh-hhhhhhcCceeEEEEEchhhhh---hHHhhccccceeeeEeC
Confidence            9999998762      233333 34567788888775 5889999999999999999884   88889999999999999


Q ss_pred             CCCCc--cCCCCceEEeeeccee------eeccCeeEEEeecC
Q 020480          283 ASFRL--SHEDTCTCTHRHSRYL------LYKFPFFVLVFPLF  317 (325)
Q Consensus       283 p~~~~--~~~~d~~~~~~~~~~~------~~~~~~~~~~~~~~  317 (325)
                      |+|++  +++.|++++.||+..-      .-.-|.+++.|...
T Consensus       586 ~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPn  628 (910)
T KOG1539|consen  586 PDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPN  628 (910)
T ss_pred             CCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCC
Confidence            99995  8999999999997542      33445555555443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.50  E-value=1.7e-12  Score=115.93  Aligned_cols=212  Identities=12%  Similarity=0.129  Sum_probs=145.1

Q ss_pred             CCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEE
Q 020480           42 WPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQ  121 (325)
Q Consensus        42 ~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (325)
                      ..+.+++.+|+++.          ++..-.++..+...|.+|+...-                           .+....
T Consensus       526 yEv~~l~~s~~gnl----------iASaCKS~~~ehAvI~lw~t~~W---------------------------~~~~~L  568 (764)
T KOG1063|consen  526 YEVYALAISPTGNL----------IASACKSSLKEHAVIRLWNTANW---------------------------LQVQEL  568 (764)
T ss_pred             eeEEEEEecCCCCE----------EeehhhhCCccceEEEEEeccch---------------------------hhhhee
Confidence            44888888988752          22222233445556677755311                           111135


Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      ..|.-.|+.++|+|++ ++|++.+.|+++.+|........      .......+.|+.-|++.+|+|++. .|+|+|+|.
T Consensus       569 ~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~------e~~fa~~k~HtRIIWdcsW~pde~-~FaTaSRDK  640 (764)
T KOG1063|consen  569 EGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKD------EFRFACLKAHTRIIWDCSWSPDEK-YFATASRDK  640 (764)
T ss_pred             cccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccch------hhhhccccccceEEEEcccCcccc-eeEEecCCc
Confidence            6799999999999999 79999999999999998542110      011223678999999999999998 699999999


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCC----cEEEEEecCCcEEEEEccCCCCCCCe---------eE
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE----YLFGSVGDDQYLLIWDLRTPSVSKPV---------QS  268 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~---------~~  268 (325)
                      +|++|........ .+... ....+...|++++|.|..-    .+++.|-..|.|.+|..........+         ..
T Consensus       641 ~VkVW~~~~~~d~-~i~~~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~  718 (764)
T KOG1063|consen  641 KVKVWEEPDLRDK-YISRF-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCA  718 (764)
T ss_pred             eEEEEeccCchhh-hhhhh-chhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeecccccc
Confidence            9999998766311 11111 2345778999999988432    37889999999999995511111011         11


Q ss_pred             eeccCCCeeEEEeCCCC------C------ccCCCCceEEeeec
Q 020480          269 VVAHQSEVGVSILNASF------R------LSHEDTCTCTHRHS  300 (325)
Q Consensus       269 ~~~h~~~v~~i~~~p~~------~------~~~~~d~~~~~~~~  300 (325)
                      ..+|.+.|+.+.|.|..      .      .++++|..++++++
T Consensus       719 ~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv  762 (764)
T KOG1063|consen  719 TIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNV  762 (764)
T ss_pred             ccChHHhhheeEeccccccccccccceeEEeeecccceeEEeec
Confidence            13567789999999862      1      27888988888764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=6e-12  Score=107.58  Aligned_cols=212  Identities=17%  Similarity=0.196  Sum_probs=152.6

Q ss_pred             HHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCC
Q 020480           31 LYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFG  110 (325)
Q Consensus        31 ~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (325)
                      |.+.-..|...-++.+++|.|..+          .++++.+     ++.+.|+++.                 |+     
T Consensus       203 lkDaNa~~ps~~~I~sv~FHp~~p----------lllvaG~-----d~~lrifqvD-----------------Gk-----  245 (514)
T KOG2055|consen  203 LKDANAAHPSHGGITSVQFHPTAP----------LLLVAGL-----DGTLRIFQVD-----------------GK-----  245 (514)
T ss_pred             ecccccCCcCcCCceEEEecCCCc----------eEEEecC-----CCcEEEEEec-----------------Cc-----
Confidence            455556666666788899999764          3444433     2467788774                 00     


Q ss_pred             CCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceEEEEecCC
Q 020480          111 CANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSWSKF  189 (325)
Q Consensus       111 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~  189 (325)
                       ..+.++-+  .--..+|.+.+|.|+|...+++++....++.||+.+        .+..++....++. ..+.....+++
T Consensus       246 -~N~~lqS~--~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~--------ak~~k~~~~~g~e~~~~e~FeVShd  314 (514)
T KOG2055|consen  246 -VNPKLQSI--HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET--------AKVTKLKPPYGVEEKSMERFEVSHD  314 (514)
T ss_pred             -cChhheee--eeccCccceeeecCCCceEEEecccceEEEEeeccc--------cccccccCCCCcccchhheeEecCC
Confidence             12222222  224578999999999966899999999999999987        3444444444544 35677888999


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe
Q 020480          190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV  269 (325)
Q Consensus       190 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  269 (325)
                      ++ +++..+..|.|.+-...++.      .+.+++ -.+.|..++|+.++ ..|++++.+|.|.+||++...+   ++.+
T Consensus       315 ~~-fia~~G~~G~I~lLhakT~e------li~s~K-ieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~~---~~rf  382 (514)
T KOG2055|consen  315 SN-FIAIAGNNGHIHLLHAKTKE------LITSFK-IEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQNSC---LHRF  382 (514)
T ss_pred             CC-eEEEcccCceEEeehhhhhh------hhheee-eccEEeeEEEecCC-cEEEEEcCCceEEEEecCCcce---EEEE
Confidence            99 89999999999999888763      455555 45779999999887 5777788899999999999875   6666


Q ss_pred             eccCCCe--eEEEeCCCCCc--cCCCCceEEeeeccee
Q 020480          270 VAHQSEV--GVSILNASFRL--SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       270 ~~h~~~v--~~i~~~p~~~~--~~~~d~~~~~~~~~~~  303 (325)
                      .. .+.|  ++++.+++|.+  +|+..|.+.+++....
T Consensus       383 ~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~  419 (514)
T KOG2055|consen  383 VD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC  419 (514)
T ss_pred             ee-cCccceeeeeecCCCceEEeccCcceEEEeccchh
Confidence            43 3333  56777788886  8899999999885443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.48  E-value=1e-12  Score=114.18  Aligned_cols=120  Identities=23%  Similarity=0.380  Sum_probs=99.4

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      -.+.|+..+|+|+| .+||+.+.||.++||++..          ...+..++..-+...+++|+|++. ++++|+.|--|
T Consensus       289 ~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt----------~eLlg~mkSYFGGLLCvcWSPDGK-yIvtGGEDDLV  356 (636)
T KOG2394|consen  289 GEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDT----------QELLGVMKSYFGGLLCVCWSPDGK-YIVTGGEDDLV  356 (636)
T ss_pred             ccccccceeEcCCC-ceEEEEecCceEEEeeccH----------HHHHHHHHhhccceEEEEEcCCcc-EEEecCCcceE
Confidence            45699999999988 7999999999999999987          333444555567899999999999 99999999999


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecC---------------------------------------------
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR---------------------------------------------  238 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---------------------------------------------  238 (325)
                      .||.+...      +.+..-.+|++.|..|+|.|-                                             
T Consensus       357 tVwSf~er------RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~  430 (636)
T KOG2394|consen  357 TVWSFEER------RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRI  430 (636)
T ss_pred             EEEEeccc------eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccc
Confidence            99999876      446666889999999999831                                             


Q ss_pred             --CCcEEEEEecCCcEEEEEccCCC
Q 020480          239 --HEYLFGSVGDDQYLLIWDLRTPS  261 (325)
Q Consensus       239 --~~~~l~s~~~dg~i~iwd~~~~~  261 (325)
                        -...|.+.+.|-.+++||+....
T Consensus       431 ~~v~YRfGSVGqDTqlcLWDlteD~  455 (636)
T KOG2394|consen  431 NSVTYRFGSVGQDTQLCLWDLTEDV  455 (636)
T ss_pred             cceEEEeecccccceEEEEecchhh
Confidence              01357888999999999997543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.47  E-value=1.6e-11  Score=102.34  Aligned_cols=161  Identities=11%  Similarity=0.118  Sum_probs=123.6

Q ss_pred             EEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe---cCCCceEEEEecCCCCCeEE
Q 020480          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR---GHSTEGYGLSWSKFKEGHLL  195 (325)
Q Consensus       119 ~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~l~  195 (325)
                      +..+..+..|.+|+++.+   .|+++-.+ .|+|||++.          .+.++++.   .+...+.++..+..+. +++
T Consensus        81 ICe~~fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~----------MklLhTI~t~~~n~~gl~AlS~n~~n~-ylA  145 (391)
T KOG2110|consen   81 ICEIFFPTSILAVRMNRK---RLVVCLEE-SIYIYDIKD----------MKLLHTIETTPPNPKGLCALSPNNANC-YLA  145 (391)
T ss_pred             EEEEecCCceEEEEEccc---eEEEEEcc-cEEEEeccc----------ceeehhhhccCCCccceEeeccCCCCc-eEE
Confidence            345667889999999874   45555544 599999998          55555553   4555677777777766 444


Q ss_pred             E-Ee-CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc-EEEEEccCCCCCCCeeEeecc
Q 020480          196 S-GS-DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY-LLIWDLRTPSVSKPVQSVVAH  272 (325)
Q Consensus       196 s-~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~h  272 (325)
                      - ++ ..|.|.|||+...      .++..+.+|.+.+.+++|+++| .+|||++..|+ ||||.+..+..   +..+..-
T Consensus       146 yp~s~t~GdV~l~d~~nl------~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~k---l~eFRRG  215 (391)
T KOG2110|consen  146 YPGSTTSGDVVLFDTINL------QPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQK---LYEFRRG  215 (391)
T ss_pred             ecCCCCCceEEEEEcccc------eeeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccE---eeeeeCC
Confidence            3 33 4589999999876      5678889999999999999998 79999999998 79999998884   6666432


Q ss_pred             --CCCeeEEEeCCCCCc--cCCCCceEEeeecceee
Q 020480          273 --QSEVGVSILNASFRL--SHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       273 --~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~  304 (325)
                        ...|.+++|+|++.+  ..|...++.++.+....
T Consensus       216 ~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  216 TYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             ceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence              346899999999997  56777889888776554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=4.4e-13  Score=117.82  Aligned_cols=221  Identities=20%  Similarity=0.269  Sum_probs=157.8

Q ss_pred             HHhhhHhcCh-hHH-HHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccC
Q 020480           20 EYKIWKKNTP-FLY-DLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDAR   97 (325)
Q Consensus        20 ~~~iw~~~~~-~~y-~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~   97 (325)
                      .+-.|.+... +++ .++....+.=++.++.|...+..          +.+.  ...+..-.+.|.++.--         
T Consensus       498 ~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY----------latV--~~~~~~~~VliHQLSK~---------  556 (733)
T KOG0650|consen  498 AVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY----------LATV--MPDSGNKSVLIHQLSKR---------  556 (733)
T ss_pred             cceeechhhhhhhccceEEEEecCCccceeeeecCCce----------EEEe--ccCCCcceEEEEecccc---------
Confidence            4557877532 233 23344444556788888887752          2221  22334446677766411         


Q ss_pred             CCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC
Q 020480           98 HYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH  177 (325)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h  177 (325)
                                       +.+ .-.....+.|.++.|+|..+ +|++++ ...|++||+..          ...+..+...
T Consensus       557 -----------------~sQ-~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~k----------qelvKkL~tg  606 (733)
T KOG0650|consen  557 -----------------KSQ-SPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSK----------QELVKKLLTG  606 (733)
T ss_pred             -----------------ccc-CchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhH----------HHHHHHHhcC
Confidence                             101 11123567888999999885 555544 45899999987          3445556666


Q ss_pred             CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEc
Q 020480          178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL  257 (325)
Q Consensus       178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~  257 (325)
                      ...|.+++.+|.|. .|+.|+.|+.+..+|+....     ++.+.+..|...+.+|+||+.= .+|++|+.||++.||.-
T Consensus       607 ~kwiS~msihp~GD-nli~gs~d~k~~WfDldlss-----kPyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  607 SKWISSMSIHPNGD-NLILGSYDKKMCWFDLDLSS-----KPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFHG  679 (733)
T ss_pred             CeeeeeeeecCCCC-eEEEecCCCeeEEEEcccCc-----chhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEee
Confidence            77899999999999 69999999999999998765     3677788899999999999974 69999999999999965


Q ss_pred             cC------CCCCCCeeEeeccCCC----eeEEEeCCCCCc--cCCCCceEEee
Q 020480          258 RT------PSVSKPVQSVVAHQSE----VGVSILNASFRL--SHEDTCTCTHR  298 (325)
Q Consensus       258 ~~------~~~~~~~~~~~~h~~~----v~~i~~~p~~~~--~~~~d~~~~~~  298 (325)
                      +-      .....|+..+.+|...    |..+.|+|....  ++|.|+++++|
T Consensus       680 ~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  680 MVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            43      2223567788888765    889999998874  89999999987

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=1.6e-12  Score=109.04  Aligned_cols=170  Identities=13%  Similarity=0.093  Sum_probs=129.4

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ..+|.+.|+++.|+..+ .+||+|+.|..+++|.+......    ...+|+.... .|.+.|.+++|...+. ++++|..
T Consensus        52 ~~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~----k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~  125 (609)
T KOG4227|consen   52 VREHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVR----KTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGER  125 (609)
T ss_pred             hhhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhh----cCCCCceeccCccccceEEEEEccCCe-eEecCCC
Confidence            45799999999999987 79999999999999998753221    1235555443 4668999999998877 8999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeee--cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFK--VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG  277 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  277 (325)
                      +++|.+-|+.+...      +..+.  ...+.|+.+.-+|.. +.|++.+.++.|.+||.|.....-.............
T Consensus       126 ~~~VI~HDiEt~qs------i~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~  198 (609)
T KOG4227|consen  126 WGTVIKHDIETKQS------IYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFY  198 (609)
T ss_pred             cceeEeeeccccee------eeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccce
Confidence            99999999998632      33332  234589999999985 8999999999999999997663111222233456778


Q ss_pred             EEEeCCCCC---ccCCCCceEEeeeccee
Q 020480          278 VSILNASFR---LSHEDTCTCTHRHSRYL  303 (325)
Q Consensus       278 ~i~~~p~~~---~~~~~d~~~~~~~~~~~  303 (325)
                      ++.|+|-..   ++.+..+...+|+.|..
T Consensus       199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  199 TAEFHPETPALILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             eeeecCCCceeEEeccccCCCCceeeccc
Confidence            899999654   26677777888887764

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=7.4e-13  Score=116.44  Aligned_cols=251  Identities=14%  Similarity=0.141  Sum_probs=163.1

Q ss_pred             hhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCC----
Q 020480           14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPL----   89 (325)
Q Consensus        14 ~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~----   89 (325)
                      +...+.++|||...+..+...+..   .--+.+++|.|.....        .++++.. .     .+.|..-.+..    
T Consensus       417 sGsdDGtvriWEi~TgRcvr~~~~---d~~I~~vaw~P~~~~~--------vLAvA~~-~-----~~~ivnp~~G~~~e~  479 (733)
T KOG0650|consen  417 SGSDDGTVRIWEIATGRCVRTVQF---DSEIRSVAWNPLSDLC--------VLAVAVG-E-----CVLIVNPIFGDRLEV  479 (733)
T ss_pred             ecCCCCcEEEEEeecceEEEEEee---cceeEEEEecCCCCce--------eEEEEec-C-----ceEEeCccccchhhh
Confidence            344677899999999866544433   3357899999987643        2222221 1     11111111110    


Q ss_pred             ---CCCCcccCCCCcccCCCCCCCCC---CCceEEEEEeccCCCeeEEEecCCCCcEEEEEecC---CeEEEEeCCCCCC
Q 020480           90 ---DDSENDARHYDDDRSDFGGFGCA---NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVS---AEVYVFDYSKHPS  160 (325)
Q Consensus        90 ---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~d---g~v~vwd~~~~~~  160 (325)
                         .+..............+..|...   .........+.|...|..+.|+..| .+||+...+   ..|.|+++..   
T Consensus       480 ~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK---  555 (733)
T KOG0650|consen  480 GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSK---  555 (733)
T ss_pred             cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEeccc---
Confidence               00000000001111112223222   1111233467899999999999999 688876543   4788999876   


Q ss_pred             CCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCC
Q 020480          161 KPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE  240 (325)
Q Consensus       161 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  240 (325)
                           .  ....-|.-..+.|.++.|+|... +|+.++. ..|+|||+...      ..+..+......|..++.||.|.
T Consensus       556 -----~--~sQ~PF~kskG~vq~v~FHPs~p-~lfVaTq-~~vRiYdL~kq------elvKkL~tg~kwiS~msihp~GD  620 (733)
T KOG0650|consen  556 -----R--KSQSPFRKSKGLVQRVKFHPSKP-YLFVATQ-RSVRIYDLSKQ------ELVKKLLTGSKWISSMSIHPNGD  620 (733)
T ss_pred             -----c--cccCchhhcCCceeEEEecCCCc-eEEEEec-cceEEEehhHH------HHHHHHhcCCeeeeeeeecCCCC
Confidence                 2  11223444456789999999998 5666664 68999999865      23444445566799999999886


Q ss_pred             cEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeeccee
Q 020480          241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       241 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~  303 (325)
                      + |+.|+.|+.++.||+.-...  |.+.+..|...+++|+|++.-.+  +|++|+++.++....+
T Consensus       621 n-li~gs~d~k~~WfDldlssk--Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY  682 (733)
T KOG0650|consen  621 N-LILGSYDKKMCWFDLDLSSK--PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVY  682 (733)
T ss_pred             e-EEEecCCCeeEEEEcccCcc--hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeee
Confidence            5 45899999999999987764  78888999999999999998776  8899999999765443

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.42  E-value=8.9e-12  Score=103.00  Aligned_cols=205  Identities=16%  Similarity=0.287  Sum_probs=142.9

Q ss_pred             hhhhhhhhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEEC
Q 020480            8 MRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQL   87 (325)
Q Consensus         8 ~~~~~~~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~   87 (325)
                      .|++++....+.++|||++.+...|..-..|.++.||..+.+.+..          .++++|-....       +.++.+
T Consensus        35 ~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~----------~~L~vg~~ngt-------vtefs~   97 (404)
T KOG1409|consen   35 KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES----------RRLYVGQDNGT-------VTEFAL   97 (404)
T ss_pred             CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc----------eEEEEEEecce-------EEEEEh
Confidence            4566778889999999999999999999999999999999998865          45666654331       233332


Q ss_pred             CCCCCCcccCCCCcccCCCCCCCCCCCceEEEE-EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCC-------
Q 020480           88 PLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ-QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP-------  159 (325)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~-------  159 (325)
                      ..                      .-.++...+ ...|...|.++-|+... ..+++.+.|..+.---.+...       
T Consensus        98 se----------------------dfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~  154 (404)
T KOG1409|consen   98 SE----------------------DFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNF  154 (404)
T ss_pred             hh----------------------hhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEe
Confidence            20                      011222222 23577777777777654 466666665544321111100       


Q ss_pred             ----CCCC--------------------CCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 020480          160 ----SKPP--------------------LDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK  215 (325)
Q Consensus       160 ----~~~~--------------------~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~  215 (325)
                          ..+.                    ......++.++.+|.+.+.+++|.+... +|++|..|..+.+||+...+.  
T Consensus       155 ~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g--  231 (404)
T KOG1409|consen  155 ETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKG--  231 (404)
T ss_pred             eccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcc--
Confidence                0000                    0123455677889999999999999877 999999999999999976543  


Q ss_pred             cccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480          216 SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (325)
Q Consensus       216 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~  259 (325)
                         ......+|...|..++..+.- ..+.+++.||.|-+||+..
T Consensus       232 ---~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  232 ---TAYELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             ---eeeeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEeccc
Confidence               345678899999999887654 6788999999999999975

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.41  E-value=2.2e-11  Score=97.72  Aligned_cols=133  Identities=17%  Similarity=0.283  Sum_probs=89.3

Q ss_pred             EEEecCCCCcEEEEEe---------cCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEE--E
Q 020480          130 RARYMPQNPFLIATKT---------VSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLS--G  197 (325)
Q Consensus       130 ~v~~~~~~~~~la~g~---------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s--~  197 (325)
                      .+.|+++|..+++...         .-|...+|.++..         ..+...+. ...++|.+++|+|++. .|+.  |
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~---------~~~~~~i~l~~~~~I~~~~WsP~g~-~favi~g   79 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEK---------NIPVESIELKKEGPIHDVAWSPNGN-EFAVIYG   79 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecC---------CCccceeeccCCCceEEEEECcCCC-EEEEEEc
Confidence            5788898855554443         1234556666431         12333333 2345799999999998 5443  4


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec---CCcEEEEEccCCCCCCCeeEeeccCC
Q 020480          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD---DQYLLIWDLRTPSVSKPVQSVVAHQS  274 (325)
Q Consensus       198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~  274 (325)
                      ..++.|.+||++.       ..+..+.  ...++.+.|+|+| +++++|+.   .|.|.+||++..+.   +.... | .
T Consensus        80 ~~~~~v~lyd~~~-------~~i~~~~--~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~---i~~~~-~-~  144 (194)
T PF08662_consen   80 SMPAKVTLYDVKG-------KKIFSFG--TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKK---ISTFE-H-S  144 (194)
T ss_pred             cCCcccEEEcCcc-------cEeEeec--CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEE---eeccc-c-C
Confidence            4678999999973       3444443  4678899999998 57777764   46799999997663   55443 3 3


Q ss_pred             CeeEEEeCCCCCc
Q 020480          275 EVGVSILNASFRL  287 (325)
Q Consensus       275 ~v~~i~~~p~~~~  287 (325)
                      .++.++|+|+|++
T Consensus       145 ~~t~~~WsPdGr~  157 (194)
T PF08662_consen  145 DATDVEWSPDGRY  157 (194)
T ss_pred             cEEEEEEcCCCCE
Confidence            4789999999995

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.41  E-value=1e-10  Score=93.84  Aligned_cols=116  Identities=16%  Similarity=0.380  Sum_probs=83.7

Q ss_pred             eccCCCeeEEEecCCCCcEEEE-EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC-
Q 020480          122 INHDGEVNRARYMPQNPFLIAT-KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-  199 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~-g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-  199 (325)
                      +...++|.+++|+|++..++++ |..++.|.+||++.           .++..+.  ...+..+.|+|+|+ ++++|+. 
T Consensus        56 l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-----------~~i~~~~--~~~~n~i~wsP~G~-~l~~~g~~  121 (194)
T PF08662_consen   56 LKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-----------KKIFSFG--TQPRNTISWSPDGR-FLVLAGFG  121 (194)
T ss_pred             ccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-----------cEeEeec--CCCceEEEECCCCC-EEEEEEcc
Confidence            4456679999999998543333 44577999999964           4455553  45778999999999 7777764 


Q ss_pred             --CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe------cCCcEEEEEccCC
Q 020480          200 --DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG------DDQYLLIWDLRTP  260 (325)
Q Consensus       200 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~------~dg~i~iwd~~~~  260 (325)
                        .|.|.+||++..      ..+.... | ..+..++|+|+| .+|+++.      .|..++||+....
T Consensus       122 n~~G~l~~wd~~~~------~~i~~~~-~-~~~t~~~WsPdG-r~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  122 NLNGDLEFWDVRKK------KKISTFE-H-SDATDVEWSPDG-RYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             CCCcEEEEEECCCC------EEeeccc-c-CcEEEEEEcCCC-CEEEEEEeccceeccccEEEEEecCe
Confidence              467999999965      3344333 3 347899999998 4666665      3788999998543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.41  E-value=6.4e-11  Score=101.90  Aligned_cols=158  Identities=13%  Similarity=0.035  Sum_probs=109.1

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      +.+...+..++|+|++..++++++.++.|++||...          ......+..+. .+..++|+|++..++++++.++
T Consensus        27 ~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~----------~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~   95 (300)
T TIGR03866        27 FPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT----------GEVIGTLPSGP-DPELFALHPNGKILYIANEDDN   95 (300)
T ss_pred             EECCCCCCceEECCCCCEEEEEECCCCeEEEEECCC----------CcEEEeccCCC-CccEEEECCCCCEEEEEcCCCC
Confidence            343445778999999854557778899999999876          22233344433 3567899999984445566789


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC-cEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ-YLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      .+++||++..      ..+..+.. ...+.+++|+|++ .++++++.++ .+.+||.++.+.   +.... ....+.+++
T Consensus        96 ~l~~~d~~~~------~~~~~~~~-~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~---~~~~~-~~~~~~~~~  163 (300)
T TIGR03866        96 LVTVIDIETR------KVLAEIPV-GVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEI---VDNVL-VDQRPRFAE  163 (300)
T ss_pred             eEEEEECCCC------eEEeEeeC-CCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeE---EEEEE-cCCCccEEE
Confidence            9999999875      23444432 2346789999987 5777777664 577889887653   33332 234567899


Q ss_pred             eCCCCCc---cCCCCceEEeeecce
Q 020480          281 LNASFRL---SHEDTCTCTHRHSRY  302 (325)
Q Consensus       281 ~~p~~~~---~~~~d~~~~~~~~~~  302 (325)
                      |+|++..   ++..++.+.+|+...
T Consensus       164 ~s~dg~~l~~~~~~~~~v~i~d~~~  188 (300)
T TIGR03866       164 FTADGKELWVSSEIGGTVSVIDVAT  188 (300)
T ss_pred             ECCCCCEEEEEcCCCCEEEEEEcCc
Confidence            9999983   344588999998754

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.40  E-value=2.4e-13  Score=123.67  Aligned_cols=163  Identities=19%  Similarity=0.245  Sum_probs=128.1

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ..+|-.+|.|+.|...| .++++|+.|..|+||...+          ...+..+.||.+.++.++.+..+. ++++++.|
T Consensus       186 LlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et----------~~~lAs~rGhs~ditdlavs~~n~-~iaaaS~D  253 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMET----------ARCLASCRGHSGDITDLAVSSNNT-MIAAASND  253 (1113)
T ss_pred             HHhhhhheeeeeecccc-ceEeecCccceeeeeeccc----------hhhhccCCCCccccchhccchhhh-hhhhcccC
Confidence            34699999999999999 7999999999999999776          344778899999999999998877 89999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-eccCCCeeEE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSEVGVS  279 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~i  279 (325)
                      ..|++|-+..+      .++..+.+|++.|++++|+|-.     +.+.||++++||.|-.....+-.-. .....-+.++
T Consensus       254 ~vIrvWrl~~~------~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~  322 (1113)
T KOG0644|consen  254 KVIRVWRLPDG------APVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSI  322 (1113)
T ss_pred             ceEEEEecCCC------chHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeee
Confidence            99999999987      5678889999999999999853     7889999999999921110000000 1123456677


Q ss_pred             EeCCCCC--ccCCCCceEEeeecceeeec
Q 020480          280 ILNASFR--LSHEDTCTCTHRHSRYLLYK  306 (325)
Q Consensus       280 ~~~p~~~--~~~~~d~~~~~~~~~~~~~~  306 (325)
                      .|..++.  .+++.|+..+.|......|+
T Consensus       323 ~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~  351 (1113)
T KOG0644|consen  323 LFENNGDRFLTGSRDGEARNHEFEQLAWR  351 (1113)
T ss_pred             eccccccccccccCCcccccchhhHhhhh
Confidence            7776655  37888888888766555544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=1.1e-11  Score=108.29  Aligned_cols=144  Identities=13%  Similarity=0.143  Sum_probs=108.5

Q ss_pred             eEEEEEeccCCCeeEEEecCC-CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeE
Q 020480          116 VQIIQQINHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL  194 (325)
Q Consensus       116 ~~~~~~~~h~~~v~~v~~~~~-~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  194 (325)
                      +.....-+|...|.++.|-|. +..++++|..|..|++||+......-...+...+.+.+..|+..|..++-.|++++.+
T Consensus        84 llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtf  163 (758)
T KOG1310|consen   84 LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTF  163 (758)
T ss_pred             eeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceE
Confidence            333445679999999999995 4468999999999999999853222111233455666778999999999999998899


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCc----ccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480          195 LSGSDDAQICLWDINAAPKNKS----LEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (325)
Q Consensus       195 ~s~s~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~  259 (325)
                      .+++.||+|+-+|++.......    ...+..+...--...++..+|..+.+||.|+.|...++||.|.
T Consensus       164 wsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr  232 (758)
T KOG1310|consen  164 WSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR  232 (758)
T ss_pred             EEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence            9999999999999998543210    0111222223345678899999999999999999999999654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=2.6e-12  Score=112.30  Aligned_cols=137  Identities=18%  Similarity=0.214  Sum_probs=109.6

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ....|...|..+.|.|.. ..|++|+.||.+.+|++...  ........+++.++.+|.++|.+++..+++. .+++|+.
T Consensus       289 tl~s~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~--~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-~~ysgg~  364 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKA--KKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-HCYSGGI  364 (577)
T ss_pred             eeecchhhhhhhhcCCCC-CeEEEeccccchhhhhhccc--CCccccceeeeEEEecccCceEEEEecCCce-EEEeecc
Confidence            456799999999999987 48999999999999999431  1111245688999999999999999999998 8999999


Q ss_pred             CCcEEEEeCCCCCCC----CcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480          200 DAQICLWDINAAPKN----KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (325)
Q Consensus       200 dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~  261 (325)
                      ||+|+.|++-.....    ........+.+|...|+.+++|+.. ..|++|+.||++|+|+.....
T Consensus       365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~  429 (577)
T KOG0642|consen  365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEES  429 (577)
T ss_pred             CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcC
Confidence            999999976522111    1112355678999999999999976 568899999999999876543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.38  E-value=6.7e-11  Score=98.70  Aligned_cols=120  Identities=16%  Similarity=0.191  Sum_probs=97.2

Q ss_pred             ccCCCeeEEEecCCCCcEEEE--EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          123 NHDGEVNRARYMPQNPFLIAT--KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~--g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      .+...+.++.+++.+ .++|-  ....|.|.+||+.+          .+++..+..|.+.+-+++|+++|. +|||+|..
T Consensus       127 ~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~n----------l~~v~~I~aH~~~lAalafs~~G~-llATASeK  194 (391)
T KOG2110|consen  127 PNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTIN----------LQPVNTINAHKGPLAALAFSPDGT-LLATASEK  194 (391)
T ss_pred             CCccceEeeccCCCC-ceEEecCCCCCceEEEEEccc----------ceeeeEEEecCCceeEEEECCCCC-EEEEeccC
Confidence            355667777777766 56664  34578999999987          678888999999999999999999 99999999


Q ss_pred             Cc-EEEEeCCCCCCCCcccceEeeecC--CccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480          201 AQ-ICLWDINAAPKNKSLEAMQIFKVH--EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (325)
Q Consensus       201 g~-i~iwd~~~~~~~~~~~~~~~~~~~--~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~  261 (325)
                      |+ |||+.+..+.+      +..|+..  ...|++++|+|++ .+|++.|..++|++|.+....
T Consensus       195 GTVIRVf~v~~G~k------l~eFRRG~~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  195 GTVIRVFSVPEGQK------LYEFRRGTYPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             ceEEEEEEcCCccE------eeeeeCCceeeEEEEEEECCCC-CeEEEecCCCeEEEEEecccc
Confidence            97 79999988844      4455432  3468999999997 589899999999999987643

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.36  E-value=1.3e-10  Score=103.88  Aligned_cols=164  Identities=23%  Similarity=0.308  Sum_probs=128.3

Q ss_pred             EEEEeccCCCeeEEEecCCCCcEEEEEec-CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEE
Q 020480          118 IIQQINHDGEVNRARYMPQNPFLIATKTV-SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (325)
Q Consensus       118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  196 (325)
                      ......|...|..+.|+|.+ ..+++++. ++.+++|+...          ...+..+.+|...+.+++|+|++...+++
T Consensus       148 ~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  216 (466)
T COG2319         148 IRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRT----------GKPLSTLAGHTDPVSSLAFSPDGGLLIAS  216 (466)
T ss_pred             EEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCC----------CceEEeeccCCCceEEEEEcCCcceEEEE
Confidence            34456799999999999998 47777775 99999999986          34566777899999999999988734555


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceE-eeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCC
Q 020480          197 GSDDAQICLWDINAAPKNKSLEAMQ-IFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (325)
Q Consensus       197 ~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~  275 (325)
                      ++.|+.|++||...+      .... .+..|...+ ...|+|++ .++++++.|+.+++|+++....  .+..+..|...
T Consensus       217 ~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~  286 (466)
T COG2319         217 GSSDGTIRLWDLSTG------KLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSS  286 (466)
T ss_pred             ecCCCcEEEEECCCC------cEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCc--EEEEEecCCcc
Confidence            599999999988743      2344 577777765 44899987 6888999999999999997764  24444678899


Q ss_pred             eeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          276 VGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       276 v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      +.++.|+|++..  +++.|+.+.+|+...
T Consensus       287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~  315 (466)
T COG2319         287 VLSVAFSPDGKLLASGSSDGTVRLWDLET  315 (466)
T ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEEcCC
Confidence            999999996653  566677788886643

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.36  E-value=1.5e-11  Score=109.75  Aligned_cols=251  Identities=9%  Similarity=0.064  Sum_probs=171.2

Q ss_pred             HHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCC----CCCCeEEEEEEECCCCCCC
Q 020480           18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE----NEPNYLMLAQVQLPLDDSE   93 (325)
Q Consensus        18 ~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~~~~~~~~~~~   93 (325)
                      +.++-+++.|.+.+.+.+..|+..  +.+|+|+.++.+.+...-.-..+++..+-.+    ++.+.|.-+.++ |-...-
T Consensus        32 g~rlliyD~ndG~llqtLKgHKDt--VycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFN-P~~h~L  108 (1081)
T KOG1538|consen   32 GSRLLVYDTSDGTLLQPLKGHKDT--VYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFN-PITHQL  108 (1081)
T ss_pred             CCEEEEEeCCCcccccccccccce--EEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecC-chHHHh
Confidence            456788999999999999999998  8999999999887655444445555554432    455556555554 321111


Q ss_pred             cccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE
Q 020480           94 NDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR  173 (325)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~  173 (325)
                      .  ++.-   .++..|......   +........|.+++|..+| .+++.|-.+|+|.+-+....        ....+..
T Consensus       109 a--sCsL---sdFglWS~~qK~---V~K~kss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gE--------ek~~I~R  171 (1081)
T KOG1538|consen  109 A--SCSL---SDFGLWSPEQKS---VSKHKSSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGE--------EKVKIER  171 (1081)
T ss_pred             h--hcch---hhccccChhhhh---HHhhhhheeEEEeeecCCC-cEEEEeccCceEEeecCCCC--------cceEEeC
Confidence            1  1111   123344333322   2234455788999999999 79999999999999876541        1111111


Q ss_pred             EecCCCceEEEEecCCCC----CeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC
Q 020480          174 LRGHSTEGYGLSWSKFKE----GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD  249 (325)
Q Consensus       174 ~~~h~~~v~~l~~~p~~~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d  249 (325)
                      -.|..++|++++|+|...    ..++......++..+.+....       +..-+.-.-...|+++.|+|. ++..|+.|
T Consensus       172 pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-------Igk~r~L~FdP~CisYf~NGE-y~LiGGsd  243 (1081)
T KOG1538|consen  172 PGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-------IGKDRALNFDPCCISYFTNGE-YILLGGSD  243 (1081)
T ss_pred             CCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-------ecccccCCCCchhheeccCCc-EEEEccCC
Confidence            125678999999999642    368888888888888876431       111122334567899999984 77899999


Q ss_pred             CcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480          250 QYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       250 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                      +.+++|--..-.    +-++.....+|++++..|+++.  .|..||++-.+++
T Consensus       244 k~L~~fTR~Gvr----LGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  244 KQLSLFTRDGVR----LGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             CceEEEeecCeE----EeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            999999644333    5565556789999999999985  7889999988764

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.35  E-value=4.8e-13  Score=121.71  Aligned_cols=125  Identities=22%  Similarity=0.388  Sum_probs=110.7

Q ss_pred             cEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC
Q 020480          171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ  250 (325)
Q Consensus       171 ~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg  250 (325)
                      +..+.+|..+|+|+.|...|. .+++|+.|..++||...+.      .++....+|++.|+.++.+..+ .++|+++.|.
T Consensus       183 ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~------~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~  254 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETA------RCLASCRGHSGDITDLAVSSNN-TMIAAASNDK  254 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccch------hhhccCCCCccccchhccchhh-hhhhhcccCc
Confidence            445678999999999999998 8999999999999998877      5688889999999999998875 6899999999


Q ss_pred             cEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCccCCCCceEEeeecceeeeccC
Q 020480          251 YLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHSRYLLYKFP  308 (325)
Q Consensus       251 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~~~~~~~~~  308 (325)
                      .|++|.++.+.   |+..+.+|++.|++|+|+|..  +.+.|++|++||.+...-.|+
T Consensus       255 vIrvWrl~~~~---pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~  307 (1113)
T KOG0644|consen  255 VIRVWRLPDGA---PVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYV  307 (1113)
T ss_pred             eEEEEecCCCc---hHHHHhccccceeeeccCccc--cCCCCCceEeccccccccccC
Confidence            99999999998   699999999999999999976  677999999999984444443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.35  E-value=2.2e-12  Score=110.36  Aligned_cols=155  Identities=17%  Similarity=0.224  Sum_probs=129.1

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      .....|+.+.|-|.. .+|++++..|.++.-|+..        +  +.+..+..-.+.+..++-+|-+. .+-+|...|+
T Consensus       207 k~~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~--------G--klVa~~~t~~G~~~vm~qNP~Na-Vih~GhsnGt  274 (545)
T KOG1272|consen  207 KRHIRVARLEFLPYH-FLLVAASEAGFLKYQDVST--------G--KLVASIRTGAGRTDVMKQNPYNA-VIHLGHSNGT  274 (545)
T ss_pred             hhcCchhhhcccchh-heeeecccCCceEEEeech--------h--hhhHHHHccCCccchhhcCCccc-eEEEcCCCce
Confidence            344678999999987 7999999999999999987        3  33555666677888999999888 8999999999


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeC
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN  282 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~  282 (325)
                      |.+|.....      .++..+.+|.++|.++++.+.| +++||.|.|..++|||+|+...   +.++.. .-+...++||
T Consensus       275 VSlWSP~sk------ePLvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~q---l~t~~t-p~~a~~ls~S  343 (545)
T KOG1272|consen  275 VSLWSPNSK------EPLVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNFYQ---LHTYRT-PHPASNLSLS  343 (545)
T ss_pred             EEecCCCCc------chHHHHHhcCCCcceEEECCCC-cEEeecccccceeEeeeccccc---cceeec-CCCccccccc
Confidence            999998876      4667778899999999999987 7999999999999999999874   555543 4577889999


Q ss_pred             CCCCccCCCCceEEeeec
Q 020480          283 ASFRLSHEDTCTCTHRHS  300 (325)
Q Consensus       283 p~~~~~~~~d~~~~~~~~  300 (325)
                      ..|.+..|.-..+.+|.-
T Consensus       344 qkglLA~~~G~~v~iw~d  361 (545)
T KOG1272|consen  344 QKGLLALSYGDHVQIWKD  361 (545)
T ss_pred             cccceeeecCCeeeeehh
Confidence            999987777777777743

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=5.3e-12  Score=110.70  Aligned_cols=181  Identities=17%  Similarity=0.186  Sum_probs=129.2

Q ss_pred             CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC------------------------------
Q 020480          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP------------------------------  163 (325)
Q Consensus       114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~------------------------------  163 (325)
                      .++++++.+.|+...+.|..+|+|..++|+|.....|++||+.....+..                              
T Consensus        40 ~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ie  119 (703)
T KOG2321|consen   40 QRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIE  119 (703)
T ss_pred             HHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceee
Confidence            35677788899999999999999998999999999999999986432211                              


Q ss_pred             -------------C-----------------CCC-----------CCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          164 -------------L-----------------DGA-----------CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       164 -------------~-----------------~~~-----------~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                                   +                 .+.           ..-+..+....+.+.++..++... +|++|+.+|.
T Consensus       120 fHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~  198 (703)
T KOG2321|consen  120 FHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG-LLACGTEDGV  198 (703)
T ss_pred             ehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccc-eEEecccCce
Confidence                         0                 000           000111122335778888888877 8999999999


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCc-----cEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-eccCCCe
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEG-----VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSEV  276 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~-----~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v  276 (325)
                      |-.||.+.......+........|.+     .|+++.|+-+| -.+++|+..|.+.|||+|+.+.   +..- ++..-+|
T Consensus       199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~p---l~~kdh~~e~pi  274 (703)
T KOG2321|consen  199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKP---LLVKDHGYELPI  274 (703)
T ss_pred             EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCc---eeecccCCccce
Confidence            99999998765444333333333443     49999999775 7899999999999999999884   4432 3445688


Q ss_pred             eEEEeCCCC---CccCCCCceEEeee
Q 020480          277 GVSILNASF---RLSHEDTCTCTHRH  299 (325)
Q Consensus       277 ~~i~~~p~~---~~~~~~d~~~~~~~  299 (325)
                      ..+.|.+.+   .+...+...+++|+
T Consensus       275 ~~l~~~~~~~q~~v~S~Dk~~~kiWd  300 (703)
T KOG2321|consen  275 KKLDWQDTDQQNKVVSMDKRILKIWD  300 (703)
T ss_pred             eeecccccCCCceEEecchHHhhhcc
Confidence            999997762   23444556677775

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=3.4e-10  Score=106.03  Aligned_cols=173  Identities=16%  Similarity=0.113  Sum_probs=121.0

Q ss_pred             CCeeEEEecC-CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE---e----cCCCceEEEEecCCCCCeEEEE
Q 020480          126 GEVNRARYMP-QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL---R----GHSTEGYGLSWSKFKEGHLLSG  197 (325)
Q Consensus       126 ~~v~~v~~~~-~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~---~----~h~~~v~~l~~~p~~~~~l~s~  197 (325)
                      ..|+.+.+-. ++..++.+|+.||.|+||+-.....     +..+.+...   .    +-.+.-.-++|..... +|+++
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~-----~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~t 1183 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW-----KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVT 1183 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEeccccccc-----CCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEec
Confidence            4566766654 3446899999999999998644110     011111111   1    1222335678888776 67777


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCC--
Q 020480          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE--  275 (325)
Q Consensus       198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~--  275 (325)
                      +.-..|+|||.......     .....+.+..|++++-+-.+.+++++|..||+|++||.|......++.....|...  
T Consensus      1184 Gd~r~IRIWDa~~E~~~-----~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1184 GDVRSIRIWDAHKEQVV-----ADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred             CCeeEEEEEecccceeE-----eecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence            76899999999865321     11223345667777766555689999999999999999988766678888889887  


Q ss_pred             eeEEEeCCCCC---ccCCCCceEEeeecce-eeeccCe
Q 020480          276 VGVSILNASFR---LSHEDTCTCTHRHSRY-LLYKFPF  309 (325)
Q Consensus       276 v~~i~~~p~~~---~~~~~d~~~~~~~~~~-~~~~~~~  309 (325)
                      |..+.+.++|.   ++|+.+|.+++||+|. ....|+.
T Consensus      1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred             ceeEEeecCCCcceeeeccCCeEEEEecccCcccccce
Confidence            99999998764   4999999999999999 4444443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.33  E-value=1.2e-10  Score=95.42  Aligned_cols=107  Identities=14%  Similarity=0.160  Sum_probs=86.7

Q ss_pred             cEEEE-EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc-EEEEeCCCCCCCCc
Q 020480          139 FLIAT-KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ-ICLWDINAAPKNKS  216 (325)
Q Consensus       139 ~~la~-g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~-i~iwd~~~~~~~~~  216 (325)
                      .+||. |-.-|.|.|-|+..        ....+...+.+|.+.|.+++.+.+|. ++||+|..|+ |||||...+..   
T Consensus       149 ~~LafPg~k~GqvQi~dL~~--------~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~---  216 (346)
T KOG2111|consen  149 SLLAFPGFKTGQVQIVDLAS--------TKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTL---  216 (346)
T ss_pred             eEEEcCCCccceEEEEEhhh--------cCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcE---
Confidence            34544 45669999999987        22334567889999999999999999 9999999998 89999999843   


Q ss_pred             ccceEeeec--CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480          217 LEAMQIFKV--HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (325)
Q Consensus       217 ~~~~~~~~~--~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~  261 (325)
                         +..++.  ....|++++|+|+. .+||++|+.|+|+||.++...
T Consensus       217 ---l~E~RRG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  217 ---LQELRRGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             ---eeeeecCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecCC
Confidence               555543  34579999999986 699999999999999998754

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.32  E-value=4.3e-11  Score=97.07  Aligned_cols=143  Identities=13%  Similarity=0.070  Sum_probs=111.9

Q ss_pred             eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEe
Q 020480          128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD  207 (325)
Q Consensus       128 v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd  207 (325)
                      ..++.|++.+ ..++++..+|.+.+-+...        ...+.+...+.|.-+++...|+...++++++|+.|+.+.-||
T Consensus       124 ~lslD~~~~~-~~i~vs~s~G~~~~v~~t~--------~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D  194 (339)
T KOG0280|consen  124 ALSLDISTSG-TKIFVSDSRGSISGVYETE--------MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWD  194 (339)
T ss_pred             eeEEEeeccC-ceEEEEcCCCcEEEEecce--------eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEE
Confidence            3467788877 5688888899998655544        234445678899999999999999888999999999999999


Q ss_pred             CCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC
Q 020480          208 INAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR  286 (325)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~  286 (325)
                      +|....    ...+..+.|...|.++.-+|..+.++++|+.|-.|++||.|+...  |+..-. -.+.|+.+.++|.-.
T Consensus       195 ~R~p~~----~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k--Pl~~~~-v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  195 IRIPKT----FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK--PLFKAK-VGGGVWRIKHHPEIF  266 (339)
T ss_pred             ecCCcc----eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC--ccccCc-cccceEEEEecchhh
Confidence            995432    123335678899999999988789999999999999999997654  555432 347899999998543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=5.6e-11  Score=111.14  Aligned_cols=160  Identities=19%  Similarity=0.169  Sum_probs=119.3

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc--eEEEEecCCCCCeEEEEeCCC
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE--GYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      ....|+++.-+-.+.+++|+|..||.|++||.+..+.       ...+...+.|+..  |..+.+.+.|-..|++|+.+|
T Consensus      1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-------ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-------DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG 1279 (1387)
T ss_pred             CCccceeecccccCCceEEEeecCCceEEeecccCCc-------cccceeecccCCcccceeEEeecCCCcceeeeccCC
Confidence            3455677666655558999999999999999987322       2456778889887  999999998877899999999


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecC---CccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeec-------
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVH---EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-------  271 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~---~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------  271 (325)
                      .|++||+|...+..   .. ....|   .+..+++..|+.. .++|+|+. +.|+||++....    +..++.       
T Consensus      1280 ~I~~~DlR~~~~e~---~~-~iv~~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~----l~~~k~n~~F~~q 1349 (1387)
T KOG1517|consen 1280 DIQLLDLRMSSKET---FL-TIVAHWEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQ----LNIIKYNPGFMGQ 1349 (1387)
T ss_pred             eEEEEecccCcccc---cc-eeeeccccCccceeeeeccCC-CeeeecCc-ceEEEEecChhh----hcccccCcccccC
Confidence            99999999853211   11 22222   2358999999976 58999988 999999997654    222221       


Q ss_pred             cCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480          272 HQSEVGVSILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       272 h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                      -.+.+.|++|+|...+  .|+.|.++.++..
T Consensus      1350 ~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1350 RIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred             cCCCcceeeecchhHhhhhccCCceEEEeec
Confidence            2356799999998775  6778888887643

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.32  E-value=3.9e-10  Score=92.53  Aligned_cols=164  Identities=16%  Similarity=0.215  Sum_probs=117.1

Q ss_pred             EEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec--CCCceEEEEecCCCCCeE
Q 020480          117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG--HSTEGYGLSWSKFKEGHL  194 (325)
Q Consensus       117 ~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~l  194 (325)
                      ..+..+...++|.++.+.++   .|++. ..+.|+||.....+         +.++.+..  ....+.+++-..... +|
T Consensus        86 ~~i~el~f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~---------k~l~~~et~~NPkGlC~~~~~~~k~-~L  151 (346)
T KOG2111|consen   86 RCIIELSFNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNP---------KLLHVIETRSNPKGLCSLCPTSNKS-LL  151 (346)
T ss_pred             cEEEEEEeccceeeEEEcCC---eEEEE-ecCeEEEEEcCCCh---------hheeeeecccCCCceEeecCCCCce-EE
Confidence            44557788899999999985   34443 46699999998532         22232321  122233333333333 33


Q ss_pred             EE-EeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc-EEEEEccCCCCCCCeeEeec-
Q 020480          195 LS-GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY-LLIWDLRTPSVSKPVQSVVA-  271 (325)
Q Consensus       195 ~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~-  271 (325)
                      |. |-.-|.|+|-|+......    +...+.+|.+.|.+++.+-+| .++||+|..|+ |||||.+++..   +..+.. 
T Consensus       152 afPg~k~GqvQi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~---l~E~RRG  223 (346)
T KOG2111|consen  152 AFPGFKTGQVQIVDLASTKPN----APSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTL---LQELRRG  223 (346)
T ss_pred             EcCCCccceEEEEEhhhcCcC----CceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcE---eeeeecC
Confidence            33 456699999999876431    345678999999999999987 79999999998 89999999984   776643 


Q ss_pred             -cCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          272 -HQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       272 -h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                       ....|.+|+|+|+..+  .+|+-+|+.++.++.
T Consensus       224 ~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  224 VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             CchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence             3467999999999996  677888999987655

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=1e-11  Score=101.52  Aligned_cols=94  Identities=15%  Similarity=0.275  Sum_probs=82.3

Q ss_pred             eEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCC
Q 020480          181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP  260 (325)
Q Consensus       181 v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~  260 (325)
                      ..++.|++.|. +||+|..||.|-|||+.+..      .-+.+.+|..+|++++|+++| +.|+|++.|..|.+||+..+
T Consensus        26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~------iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~g   97 (405)
T KOG1273|consen   26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFR------IARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKG   97 (405)
T ss_pred             cceEEeccCcc-eeeeeccCCcEEEEEccccc------hhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCC
Confidence            67999999999 89999999999999999863      455678999999999999998 79999999999999999999


Q ss_pred             CCCCCeeEeeccCCCeeEEEeCCCCC
Q 020480          261 SVSKPVQSVVAHQSEVGVSILNASFR  286 (325)
Q Consensus       261 ~~~~~~~~~~~h~~~v~~i~~~p~~~  286 (325)
                      ..   ++.+. ..++|+...|+|..+
T Consensus        98 s~---l~rir-f~spv~~~q~hp~k~  119 (405)
T KOG1273|consen   98 SP---LKRIR-FDSPVWGAQWHPRKR  119 (405)
T ss_pred             Cc---eeEEE-ccCccceeeeccccC
Confidence            84   66654 578888888888654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.31  E-value=5.8e-11  Score=99.72  Aligned_cols=159  Identities=11%  Similarity=0.077  Sum_probs=128.3

Q ss_pred             CCCeeEEEecCCCCcEEEEEecC--CeEEEEeCCCCCCCCCCCCCCCCcEEEe-------c--CCCceEEEEecCC--CC
Q 020480          125 DGEVNRARYMPQNPFLIATKTVS--AEVYVFDYSKHPSKPPLDGACSPDLRLR-------G--HSTEGYGLSWSKF--KE  191 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~d--g~v~vwd~~~~~~~~~~~~~~~~~~~~~-------~--h~~~v~~l~~~p~--~~  191 (325)
                      ...+..+.-++..+.++|+|+..  ..+.+||+...          +.++.-.       +  -.-.++++.|-+.  ..
T Consensus       148 g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~----------~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~  217 (412)
T KOG3881|consen  148 GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS----------KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNY  217 (412)
T ss_pred             CCceeeeccCCCCCceEecCchhcccceeeeecccc----------eeeeeccCCCCccccceeeeeeccceecCCCCCc
Confidence            35677778888877899999999  89999999862          1121111       0  1124678888776  55


Q ss_pred             CeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeec
Q 020480          192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA  271 (325)
Q Consensus       192 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  271 (325)
                       .|++++.-+.+++||.+.++     .|+..+.-....+.++...|.+ +++++|...|.+..||+|.++.  ....+.+
T Consensus       218 -~fat~T~~hqvR~YDt~~qR-----RPV~~fd~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl--~g~~~kg  288 (412)
T KOG3881|consen  218 -KFATITRYHQVRLYDTRHQR-----RPVAQFDFLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKL--LGCGLKG  288 (412)
T ss_pred             -eEEEEecceeEEEecCcccC-----cceeEeccccCcceeeeecCCC-cEEEEecccchhheecccCcee--eccccCC
Confidence             89999999999999999765     4677777778899999999987 7899999999999999999985  3445788


Q ss_pred             cCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          272 HQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       272 h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      ..+.|++|..+|.+++  ++|.|..+|++|+..
T Consensus       289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             ccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            8999999999999885  899999999998765

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.31  E-value=6e-10  Score=97.66  Aligned_cols=178  Identities=11%  Similarity=0.043  Sum_probs=106.5

Q ss_pred             ceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeE
Q 020480          115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL  194 (325)
Q Consensus       115 ~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  194 (325)
                      .+.........+....+.|+|++..++++.-.++.|.+|++.....      ....+..+. +....+.++++|++..++
T Consensus        69 ~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~------~~~~~~~~~-~~~~~~~~~~~p~g~~l~  141 (330)
T PRK11028         69 ALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI------PVAPIQIIE-GLEGCHSANIDPDNRTLW  141 (330)
T ss_pred             ceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC------CCCceeecc-CCCcccEeEeCCCCCEEE
Confidence            4444444455556778999999954444444589999999864110      011222222 334567889999998555


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCc-ccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC-CCCCeeEeecc
Q 020480          195 LSGSDDAQICLWDINAAPKNKS-LEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS-VSKPVQSVVAH  272 (325)
Q Consensus       195 ~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~h  272 (325)
                      ++...++.|.+||+........ ........ .......++|+|++..++++...++.|.+||+.... ..+.+..+..+
T Consensus       142 v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~  220 (330)
T PRK11028        142 VPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM  220 (330)
T ss_pred             EeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC
Confidence            6666789999999976321100 00001111 123467899999985444554559999999998421 11123333221


Q ss_pred             ------CCCeeEEEeCCCCCc---cCCCCceEEeeec
Q 020480          273 ------QSEVGVSILNASFRL---SHEDTCTCTHRHS  300 (325)
Q Consensus       273 ------~~~v~~i~~~p~~~~---~~~~d~~~~~~~~  300 (325)
                            ......+.|+|+|++   +...++++.+|++
T Consensus       221 p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i  257 (330)
T PRK11028        221 PADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV  257 (330)
T ss_pred             CCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence                  122346899999984   3345678888865

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=2.9e-10  Score=94.84  Aligned_cols=220  Identities=14%  Similarity=0.209  Sum_probs=130.6

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .|..+||++++.-.-  ....+...=.+.+++|-|..-.         .+++|-..      -|.+|..+-+....- . 
T Consensus       118 nddvVriy~ksst~p--t~Lks~sQrnvtclawRPlsas---------elavgCr~------gIciW~~s~tln~~r-~-  178 (445)
T KOG2139|consen  118 NDDVVRIYDKSSTCP--TKLKSVSQRNVTCLAWRPLSAS---------ELAVGCRA------GICIWSDSRTLNANR-N-  178 (445)
T ss_pred             cCcEEEEeccCCCCC--ceecchhhcceeEEEeccCCcc---------eeeeeecc------eeEEEEcCccccccc-c-
Confidence            345667776665111  1111111113668899887642         45565543      377776653311000 0 


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEe-cCCeEEEEeCCCCCCCCCCCCCCCCcEEEe
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKT-VSAEVYVFDYSKHPSKPPLDGACSPDLRLR  175 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  175 (325)
                               +.  .......++.+.-+| -+|+.++|+++| ..+++++ .|..|.|||...        +...|+..  
T Consensus       179 ---------~~--~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdt--------g~~~pL~~--  235 (445)
T KOG2139|consen  179 ---------IR--MMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDT--------GQKIPLIP--  235 (445)
T ss_pred             ---------cc--cccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCC--------CCcccccc--
Confidence                     00  001223333333445 789999999999 5676665 467899999988        55555542  


Q ss_pred             cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEE
Q 020480          176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW  255 (325)
Q Consensus       176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iw  255 (325)
                      -.-+.++-+.|+|++. +|+.+.-|+..++|+....-.     ..+ .....+.|...+|+|.|..+|.+++..-.  +|
T Consensus       236 ~glgg~slLkwSPdgd-~lfaAt~davfrlw~e~q~wt-----~er-w~lgsgrvqtacWspcGsfLLf~~sgsp~--ly  306 (445)
T KOG2139|consen  236 KGLGGFSLLKWSPDGD-VLFAATCDAVFRLWQENQSWT-----KER-WILGSGRVQTACWSPCGSFLLFACSGSPR--LY  306 (445)
T ss_pred             cCCCceeeEEEcCCCC-EEEEecccceeeeehhcccce-----ecc-eeccCCceeeeeecCCCCEEEEEEcCCce--EE
Confidence            2345688999999999 899999999999996554311     111 12234589999999999877777775544  44


Q ss_pred             EccCCCCC------------CCeeEee---------ccCCCeeEEEeCCCCCc
Q 020480          256 DLRTPSVS------------KPVQSVV---------AHQSEVGVSILNASFRL  287 (325)
Q Consensus       256 d~~~~~~~------------~~~~~~~---------~h~~~v~~i~~~p~~~~  287 (325)
                      .+......            .++..+.         ...+++.+++|+|.|..
T Consensus       307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey  359 (445)
T KOG2139|consen  307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY  359 (445)
T ss_pred             EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE
Confidence            44321110            0011110         12467899999999984

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.26  E-value=2.7e-11  Score=109.28  Aligned_cols=199  Identities=16%  Similarity=0.281  Sum_probs=148.8

Q ss_pred             HhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCC
Q 020480           34 LVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCAN  113 (325)
Q Consensus        34 ~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (325)
                      .+..|.++|.+-.++|+|....+        ..++.+...     .-.+|.+..|                       ..
T Consensus        60 r~l~h~tpw~vad~qws~h~a~~--------~wiVsts~q-----kaiiwnlA~s-----------------------s~  103 (1081)
T KOG0309|consen   60 RWLHHITPWQVADVQWSPHPAKP--------YWIVSTSNQ-----KAIIWNLAKS-----------------------SS  103 (1081)
T ss_pred             eeeeccCcchhcceecccCCCCc--------eeEEecCcc-----hhhhhhhhcC-----------------------Cc
Confidence            34567789999999999987654        444444322     2335666555                       22


Q ss_pred             CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCe
Q 020480          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (325)
Q Consensus       114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  193 (325)
                      ..++++ ..+|..+|+.+.|+|+.+..+|+++.|..|..||++..         ..++.....-......++|+-..+ .
T Consensus       104 ~aIef~-lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp---------~~p~ys~~~w~s~asqVkwnyk~p-~  172 (1081)
T KOG0309|consen  104 NAIEFV-LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP---------HRPFYSTSSWRSAASQVKWNYKDP-N  172 (1081)
T ss_pred             cceEEE-EecCccceeccccCCCCCcceeeccccccceeeeccCC---------CcceeeeecccccCceeeecccCc-c
Confidence            345553 67899999999999999999999999999999999872         455666665556778999998888 4


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC
Q 020480          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ  273 (325)
Q Consensus       194 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~  273 (325)
                      +.+.+....|.+||++.+.     .++..+++|...|+.+.|+..-...+.+++.||+|++||......  .-.....-.
T Consensus       173 vlasshg~~i~vwd~r~gs-----~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~~~~vtt~  245 (1081)
T KOG0309|consen  173 VLASSHGNDIFVWDLRKGS-----TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ESKRTVTTN  245 (1081)
T ss_pred             hhhhccCCceEEEeccCCC-----cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--ccceecccc
Confidence            6666777889999999875     467888889999999999875556788999999999999886543  112222345


Q ss_pred             CCeeEEEeCCCCC
Q 020480          274 SEVGVSILNASFR  286 (325)
Q Consensus       274 ~~v~~i~~~p~~~  286 (325)
                      .+|+.-.+-|-|.
T Consensus       246 ~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  246 FPIWRGRYLPFGE  258 (1081)
T ss_pred             CcceeccccccCc
Confidence            6777777777665

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=4e-10  Score=93.98  Aligned_cols=152  Identities=13%  Similarity=0.161  Sum_probs=106.6

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCC----CCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPL----DGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      ..+..|+|++|-|.+...|++|+..| |.+|..........+    ..-...+....+| .+|+++.|++++. .+++++
T Consensus       138 ~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS  214 (445)
T KOG2139|consen  138 VSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTAS  214 (445)
T ss_pred             hhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecc
Confidence            45678999999998878999988765 889987653322210    0011112334466 6899999999998 677776


Q ss_pred             -CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480          199 -DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG  277 (325)
Q Consensus       199 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  277 (325)
                       .|..|.|||..++..    .++.  ....+.+.-+.|+|++ .+|.++.-|+..++|+....-.   -....-..+.|.
T Consensus       215 ~gsssi~iWdpdtg~~----~pL~--~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt---~erw~lgsgrvq  284 (445)
T KOG2139|consen  215 FGSSSIMIWDPDTGQK----IPLI--PKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWT---KERWILGSGRVQ  284 (445)
T ss_pred             cCcceEEEEcCCCCCc----cccc--ccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccce---ecceeccCCcee
Confidence             567899999998855    2333  2234568889999998 5777889999999996654332   111112345899


Q ss_pred             EEEeCCCCCc
Q 020480          278 VSILNASFRL  287 (325)
Q Consensus       278 ~i~~~p~~~~  287 (325)
                      ..+|+|.|++
T Consensus       285 tacWspcGsf  294 (445)
T KOG2139|consen  285 TACWSPCGSF  294 (445)
T ss_pred             eeeecCCCCE
Confidence            9999999984

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.23  E-value=6.2e-11  Score=103.38  Aligned_cols=154  Identities=13%  Similarity=0.114  Sum_probs=118.4

Q ss_pred             cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCccc
Q 020480          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE  218 (325)
Q Consensus       139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  218 (325)
                      ..|+.++.||.+.+.+-..           +....+..|.+++.+-.|+|+|. -|+|++.||.|++|.-....      
T Consensus        76 d~~~i~s~DGkf~il~k~~-----------rVE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrsGML------  137 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSA-----------RVERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRSGML------  137 (737)
T ss_pred             ceEEEEcCCceEEEecccc-----------hhhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEeccchH------
Confidence            5688889999999988654           44556789999999999999999 59999999999999865431      


Q ss_pred             ceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEE
Q 020480          219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCT  296 (325)
Q Consensus       219 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~  296 (325)
                       ..++......|+|++|.|+..+++.+.+.  .+.|=-+....   .+...++|.+-|.++.|++...+  +||.|..-+
T Consensus       138 -RStl~Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n~---k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfK  211 (737)
T KOG1524|consen  138 -RSTVVQNEESIRCARWAPNSNSIVFCQGG--HISIKPLAANS---KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFK  211 (737)
T ss_pred             -HHHHhhcCceeEEEEECCCCCceEEecCC--eEEEeeccccc---ceeEEeccCcEEEEeecCccccceeecCCceeEE
Confidence             22333456689999999987666655443  44444444444   36677899999999999997765  999999999


Q ss_pred             eeecce------eeeccCeeEEEeec
Q 020480          297 HRHSRY------LLYKFPFFVLVFPL  316 (325)
Q Consensus       297 ~~~~~~------~~~~~~~~~~~~~~  316 (325)
                      +||..-      ....||++++.|..
T Consensus       212 vWD~~G~~Lf~S~~~ey~ITSva~np  237 (737)
T KOG1524|consen  212 IWDAQGANLFTSAAEEYAITSVAFNP  237 (737)
T ss_pred             eecccCcccccCChhccceeeeeecc
Confidence            998532      23679999988753

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=1.2e-09  Score=99.01  Aligned_cols=147  Identities=9%  Similarity=0.078  Sum_probs=93.2

Q ss_pred             CeeEEEecCCCCcEEEE-EecCCeEEEE--eCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          127 EVNRARYMPQNPFLIAT-KTVSAEVYVF--DYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~-g~~dg~v~vw--d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      ....++|+|+|. .|+. ...+|.+.||  |+..           .....+..+...+....|+|++..+++++..+|..
T Consensus       249 ~~~~~~wSPDG~-~La~~~~~~g~~~Iy~~d~~~-----------~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~  316 (429)
T PRK01742        249 HNGAPAFSPDGS-RLAFASSKDGVLNIYVMGANG-----------GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSP  316 (429)
T ss_pred             ccCceeECCCCC-EEEEEEecCCcEEEEEEECCC-----------CCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCc
Confidence            345689999994 5554 4568876665  5443           22345566777788999999998444555578889


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCC
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNA  283 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p  283 (325)
                      .||++......     ...+ .+..  ...+|+|++. .++.++.++ +.+||+.++..    ..+... ....++.|+|
T Consensus       317 ~I~~~~~~~~~-----~~~l-~~~~--~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g~~----~~lt~~-~~~~~~~~sP  381 (429)
T PRK01742        317 QVYRMSASGGG-----ASLV-GGRG--YSAQISADGK-TLVMINGDN-VVKQDLTSGST----EVLSST-FLDESPSISP  381 (429)
T ss_pred             eEEEEECCCCC-----eEEe-cCCC--CCccCCCCCC-EEEEEcCCC-EEEEECCCCCe----EEecCC-CCCCCceECC
Confidence            99987653221     1112 2332  4578999984 666666655 55699988763    222111 1235678999


Q ss_pred             CCCc--cCCCCceEEeeec
Q 020480          284 SFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       284 ~~~~--~~~~d~~~~~~~~  300 (325)
                      +|++  .++.++...+|.+
T Consensus       382 dG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        382 NGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             CCCEEEEEEcCCCceEEEE
Confidence            9985  4455676766654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.21  E-value=5.1e-10  Score=100.23  Aligned_cols=145  Identities=17%  Similarity=0.206  Sum_probs=104.2

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEE
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW  206 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iw  206 (325)
                      .|+.++|-|+|..+++++  +..+.+||.+.          ...+.++++|.+.|.+++|+.+|. .+++|+.|..|.+|
T Consensus        14 ci~d~afkPDGsqL~lAA--g~rlliyD~nd----------G~llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W   80 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA--GSRLLVYDTSD----------GTLLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIW   80 (1081)
T ss_pred             chheeEECCCCceEEEec--CCEEEEEeCCC----------cccccccccccceEEEEEEccCCc-eeccCCCceeEEEe
Confidence            899999999996555553  35899999987          344778999999999999999999 89999999999999


Q ss_pred             eCCCCCC-----CCcccce------------------------Eeee--cCCccEEEEEeecCCCcEEEEEecCCcEEEE
Q 020480          207 DINAAPK-----NKSLEAM------------------------QIFK--VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW  255 (325)
Q Consensus       207 d~~~~~~-----~~~~~~~------------------------~~~~--~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iw  255 (325)
                      ..+-...     ...+++.                        ....  .....|.+.+|..+| .+++-|-.+|+|.+-
T Consensus        81 ~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDG-qylalG~~nGTIsiR  159 (1081)
T KOG1538|consen   81 TSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDG-QYLALGMFNGTISIR  159 (1081)
T ss_pred             cccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCC-cEEEEeccCceEEee
Confidence            8653211     0001000                        0000  123567888899887 699999999999987


Q ss_pred             EccCCCCCCCeeEeeccCCCeeEEEeCCCCC
Q 020480          256 DLRTPSVSKPVQSVVAHQSEVGVSILNASFR  286 (325)
Q Consensus       256 d~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~  286 (325)
                      +-..... -.+..-.+..++|++|+|+|...
T Consensus       160 Nk~gEek-~~I~Rpgg~Nspiwsi~~~p~sg  189 (1081)
T KOG1538|consen  160 NKNGEEK-VKIERPGGSNSPIWSICWNPSSG  189 (1081)
T ss_pred             cCCCCcc-eEEeCCCCCCCCceEEEecCCCC
Confidence            5433221 11222244678999999999754

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.20  E-value=6.6e-09  Score=91.10  Aligned_cols=175  Identities=11%  Similarity=0.094  Sum_probs=112.3

Q ss_pred             CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCe
Q 020480          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (325)
Q Consensus       114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  193 (325)
                      +++..+..+.+.+....+.++|++..+++++..++.|.+|++...       +........ ........++++|+++ +
T Consensus        23 g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~-------g~l~~~~~~-~~~~~p~~i~~~~~g~-~   93 (330)
T PRK11028         23 GALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD-------GALTFAAES-PLPGSPTHISTDHQGR-F   93 (330)
T ss_pred             CceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCC-------CceEEeeee-cCCCCceEEEECCCCC-E
Confidence            455666667777778899999998444444456889999998631       111112222 1233567899999999 5


Q ss_pred             EEEEe-CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCC----eeE
Q 020480          194 LLSGS-DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP----VQS  268 (325)
Q Consensus       194 l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~  268 (325)
                      +++++ .++.|.+|++.......  ..+..+. +......++++|++..++++...++.|.+||+.......+    ...
T Consensus        94 l~v~~~~~~~v~v~~~~~~g~~~--~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~  170 (330)
T PRK11028         94 LFSASYNANCVSVSPLDKDGIPV--APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT  170 (330)
T ss_pred             EEEEEcCCCeEEEEEECCCCCCC--Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee
Confidence            55554 58999999997432110  1222222 2234677889999866667777889999999986432111    011


Q ss_pred             eeccCCCeeEEEeCCCCCc---cCCCCceEEeeecc
Q 020480          269 VVAHQSEVGVSILNASFRL---SHEDTCTCTHRHSR  301 (325)
Q Consensus       269 ~~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~~  301 (325)
                      .. .......++|+|+|++   +...++++.+|++.
T Consensus       171 ~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        171 TV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             cC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            11 2344678999999985   33347889988875

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.18  E-value=7.5e-11  Score=94.29  Aligned_cols=122  Identities=14%  Similarity=0.190  Sum_probs=97.4

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ...|.++|.++.|.+.- ..=++|+.+-.+..|++....      +.......+.-..-.|..+..-|++. .++|++.|
T Consensus       201 ~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~------gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD  272 (323)
T KOG0322|consen  201 NASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHST------GSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWD  272 (323)
T ss_pred             hhhccCcceeeeechhh-cCCcCCCccccceeeeecccc------CcccccceEEecCCCccceEEccCCc-EEeecccC
Confidence            34599999999999865 455677888889999987622      11221222222334678899999999 99999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEc
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL  257 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~  257 (325)
                      +.||||..++.      .++..++-|+..|++++|+|+. .++|+++.|+.|.+|++
T Consensus       273 ~RiRVyswrtl------~pLAVLkyHsagvn~vAfspd~-~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  273 HRIRVYSWRTL------NPLAVLKYHSAGVNAVAFSPDC-ELMAAASKDARISLWKL  322 (323)
T ss_pred             CcEEEEEeccC------CchhhhhhhhcceeEEEeCCCC-chhhhccCCceEEeeec
Confidence            99999999987      5788889999999999999984 69999999999999986

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.17  E-value=1e-09  Score=104.36  Aligned_cols=185  Identities=12%  Similarity=0.137  Sum_probs=128.4

Q ss_pred             EEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       119 ~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      .....|...|..++.++....+|++|+.||+|++|+.++.....   +..+...++..-.+.+..+...+.+. .+|.++
T Consensus      1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~---~s~rS~ltys~~~sr~~~vt~~~~~~-~~Av~t 1117 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG---GSARSELTYSPEGSRVEKVTMCGNGD-QFAVST 1117 (1431)
T ss_pred             ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc---ceeeeeEEEeccCCceEEEEeccCCC-eEEEEc
Confidence            34556999999999998776799999999999999998743221   12223344444567889999999888 799999


Q ss_pred             CCCcEEEEeCCCCCCCC-cccceEeeecCC-ccE-EEEEeecCCCc-EEEEEecCCcEEEEEccCCCCCCCeeEee--cc
Q 020480          199 DDAQICLWDINAAPKNK-SLEAMQIFKVHE-GVV-EDVAWHLRHEY-LFGSVGDDQYLLIWDLRTPSVSKPVQSVV--AH  272 (325)
Q Consensus       199 ~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~-~~v-~~v~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~h  272 (325)
                      .||.|++.++......+ .....+....+. +.+ ..-++...... .++.+..-+.|..||+|+...   +.+++  ..
T Consensus      1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~---~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD---AWRLKNQLR 1194 (1431)
T ss_pred             CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh---HHhhhcCcc
Confidence            99999999998732111 111122222222 223 33334332233 788888999999999998874   44442  23


Q ss_pred             CCCeeEEEeCCCCCc--cCCCCceEEeeeccee----eeccCee
Q 020480          273 QSEVGVSILNASFRL--SHEDTCTCTHRHSRYL----LYKFPFF  310 (325)
Q Consensus       273 ~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~----~~~~~~~  310 (325)
                      .+.|++++.+|.+.+  +|...|...+||+|.-    .|.+|..
T Consensus      1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~ 1238 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR 1238 (1431)
T ss_pred             ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc
Confidence            478999999999885  7888899999998763    4666644

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.16  E-value=5.5e-10  Score=104.43  Aligned_cols=143  Identities=19%  Similarity=0.162  Sum_probs=117.7

Q ss_pred             cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCccc
Q 020480          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE  218 (325)
Q Consensus       139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  218 (325)
                      -++++|+.-+.|.+|+...         ...+. .+.+|.+.+.++.|+-++. +++++|.|.++++|++.+.+..    
T Consensus       146 ~~i~~gsv~~~iivW~~~~---------dn~p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~----  210 (967)
T KOG0974|consen  146 LYIASGSVFGEIIVWKPHE---------DNKPI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVL----  210 (967)
T ss_pred             EEEEeccccccEEEEeccc---------cCCcc-eecccCCceEEEEEccCCc-EEEEEecCcceeeeeccccccc----
Confidence            6799999999999999874         12223 6889999999999999999 8999999999999999987542    


Q ss_pred             ceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC-CCeeEEEeCCCCCc--cCCCCceE
Q 020480          219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ-SEVGVSILNASFRL--SHEDTCTC  295 (325)
Q Consensus       219 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~i~~~p~~~~--~~~~d~~~  295 (325)
                       ....-+|+..|+.++|+|.   .++|++.|.+.++|+.....    +..+..|. ..|+.++.++...+  +++.|+++
T Consensus       211 -~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~----l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~l  282 (967)
T KOG0974|consen  211 -GCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQ----LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTL  282 (967)
T ss_pred             -CcccccccceeEEEEeccc---eeEEeccceEEEEEecccce----ehhhhhhhhcceeEEEEcCCceEEEeeccCcch
Confidence             2244679999999999985   79999999999999665544    45666664 57899999987764  99999999


Q ss_pred             Eeeecceee
Q 020480          296 THRHSRYLL  304 (325)
Q Consensus       296 ~~~~~~~~~  304 (325)
                      ++|++....
T Consensus       283 k~~~l~~r~  291 (967)
T KOG0974|consen  283 KLWDLNGRG  291 (967)
T ss_pred             hhhhhhccc
Confidence            999875544

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.15  E-value=6.2e-10  Score=93.67  Aligned_cols=140  Identities=17%  Similarity=0.223  Sum_probs=114.2

Q ss_pred             CCCeeEEEecCC-CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          125 DGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       125 ~~~v~~v~~~~~-~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      +-.++++.|-+. ....||+++.-+.|++||.+.         ..+|+..+.--..+++++...|.++ ++++|..-|.+
T Consensus       202 PvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~---------qRRPV~~fd~~E~~is~~~l~p~gn-~Iy~gn~~g~l  271 (412)
T KOG3881|consen  202 PVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH---------QRRPVAQFDFLENPISSTGLTPSGN-FIYTGNTKGQL  271 (412)
T ss_pred             eeeeccceecCCCCCceEEEEecceeEEEecCcc---------cCcceeEeccccCcceeeeecCCCc-EEEEecccchh
Confidence            345678888885 137899999999999999986         3578888887788999999999998 89999999999


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCC
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNA  283 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p  283 (325)
                      ..||++.+..     ....+.+-.+.|.++..+|.+ .++|+||-|..|||+|+.+...   +... .-++.+++|.+.+
T Consensus       272 ~~FD~r~~kl-----~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~ktrkl---l~kv-YvKs~lt~il~~~  341 (412)
T KOG3881|consen  272 AKFDLRGGKL-----LGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTRKL---LHKV-YVKSRLTFILLRD  341 (412)
T ss_pred             heecccCcee-----eccccCCccCCcceEEEcCCC-ceEEeeccceeEEEeecccchh---hhhh-hhhccccEEEecC
Confidence            9999998742     233478888999999999987 5999999999999999999652   3332 2356678888866


Q ss_pred             C
Q 020480          284 S  284 (325)
Q Consensus       284 ~  284 (325)
                      +
T Consensus       342 ~  342 (412)
T KOG3881|consen  342 D  342 (412)
T ss_pred             C
Confidence            4

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.13  E-value=6e-09  Score=93.03  Aligned_cols=162  Identities=20%  Similarity=0.310  Sum_probs=127.0

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceEEEEe-cCCCCCeEEEE
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSW-SKFKEGHLLSG  197 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~-~p~~~~~l~s~  197 (325)
                      ....|...+..+.+.+.+ ..++.++.|+.+.+|+...        .. .....+.++. ..+..+.+ ++++...++..
T Consensus        60 ~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (466)
T COG2319          60 LLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDN--------GE-KLIKSLEGLHDSSVSKLALSSPDGNSILLAS  129 (466)
T ss_pred             eeeeccceEEEEEECCCC-cEEEEecCCCcEEEEEcCC--------Cc-eeEEEEeccCCCceeeEEEECCCcceEEecc
Confidence            356789999999999988 6788888999999999987        11 1345555533 36777777 77766344444


Q ss_pred             e-CCCcEEEEeCCC-CCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec-CCcEEEEEccCCCCCCCeeEeeccCC
Q 020480          198 S-DDAQICLWDINA-APKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-DQYLLIWDLRTPSVSKPVQSVVAHQS  274 (325)
Q Consensus       198 s-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~  274 (325)
                      + .|+.+.+||... .      .....+..|...|..++|+|++. .+++++. |+.+++|+++...   .+..+..|..
T Consensus       130 ~~~d~~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  199 (466)
T COG2319         130 SSLDGTVKLWDLSTPG------KLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGK---PLSTLAGHTD  199 (466)
T ss_pred             CCCCccEEEEEecCCC------eEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCc---eEEeeccCCC
Confidence            4 499999999986 3      34667888999999999999974 7777775 9999999999865   4777788999


Q ss_pred             CeeEEEeCCCCC-c--cCCCCceEEeeecc
Q 020480          275 EVGVSILNASFR-L--SHEDTCTCTHRHSR  301 (325)
Q Consensus       275 ~v~~i~~~p~~~-~--~~~~d~~~~~~~~~  301 (325)
                      .|.+++|+|++. +  +++.|+.+++|+.+
T Consensus       200 ~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~  229 (466)
T COG2319         200 PVSSLAFSPDGGLLIASGSSDGTIRLWDLS  229 (466)
T ss_pred             ceEEEEEcCCcceEEEEecCCCcEEEEECC
Confidence            999999999986 3  44789999998654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.13  E-value=3.6e-09  Score=89.29  Aligned_cols=130  Identities=10%  Similarity=0.019  Sum_probs=99.9

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ....|.+.|.|++|...+ ..+.+|+.+++|.+.|+.+        ....-+..-....+.|+.+..+|..+ .|++.+.
T Consensus       100 ~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~VI~HDiEt--------~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~  169 (609)
T KOG4227|consen  100 MEHPHRSNIFSLEFDLEN-RFLYSGERWGTVIKHDIET--------KQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTR  169 (609)
T ss_pred             ccCccccceEEEEEccCC-eeEecCCCcceeEeeeccc--------ceeeeeecccCcccceeecccCCCCc-eEEEEec
Confidence            344577999999999876 7999999999999999987        21111222223345899999999976 8999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV  262 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  262 (325)
                      ++.|.+||.+.......+   ............+.|+|..+.+|++.+..+-+.+||.|....
T Consensus       170 ~~~V~~~D~Rd~~~~~~~---~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~  229 (609)
T KOG4227|consen  170 AKLVSFIDNRDRQNPISL---VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR  229 (609)
T ss_pred             CceEEEEeccCCCCCCce---eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccc
Confidence            999999999976532111   112223456788999999899999999999999999998653

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=3.9e-10  Score=97.36  Aligned_cols=170  Identities=19%  Similarity=0.240  Sum_probs=131.9

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ecCCCceEEEEecCCC-CCeEEEEe
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RGHSTEGYGLSWSKFK-EGHLLSGS  198 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~-~~~l~s~s  198 (325)
                      .-.|.|.|+.|.|+..| ..+++|+.|..|.+||+..          ..+...+ .+|...|..-.|.|.. ...+++++
T Consensus       138 L~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~----------~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s  206 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVS----------GSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS  206 (559)
T ss_pred             ccCCCCccceeeecccC-ceeeccCccceEEeehhhc----------cCcccccccccccchhhhhccCCCCCcCceecc
Confidence            34699999999999998 7999999999999999987          2334333 4788888888887753 23699999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC---C
Q 020480          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS---E  275 (325)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~---~  275 (325)
                      .||.+++=.+......   .-...+..|.+.|..++.-|..+..|.+++.|+.+.-+|+|.......+.....+..   .
T Consensus       207 ~dgqvr~s~i~~t~~~---e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~  283 (559)
T KOG1334|consen  207 RDGQVRVSEILETGYV---ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVG  283 (559)
T ss_pred             ccCceeeeeeccccce---ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcccee
Confidence            9999998876654332   112345678999999999999889999999999999999998875333333344444   5


Q ss_pred             eeEEEeCCCCC--c-cCCCCceEEeeecceee
Q 020480          276 VGVSILNASFR--L-SHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       276 v~~i~~~p~~~--~-~~~~d~~~~~~~~~~~~  304 (325)
                      ..+|+.+|...  + +++.|-..++++.|.+.
T Consensus       284 L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~  315 (559)
T KOG1334|consen  284 LYTIAVDPRNTNEFAVGGSDQFARVYDQRRID  315 (559)
T ss_pred             eeeEecCCCCccccccCChhhhhhhhcccchh
Confidence            68899998665  2 88899999999887654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=8.4e-09  Score=93.59  Aligned_cols=153  Identities=12%  Similarity=0.126  Sum_probs=98.6

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecC---CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEE-E
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVS---AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS-G  197 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s-~  197 (325)
                      ..|...+...+|+|+| +.|+..+.+   ..|++||+..        +....+..+.+|   ...++|+|++. .|+. .
T Consensus       200 t~~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~t--------g~~~~l~~~~g~---~~~~~wSPDG~-~La~~~  266 (429)
T PRK01742        200 NRSSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRS--------GARKVVASFRGH---NGAPAFSPDGS-RLAFAS  266 (429)
T ss_pred             ccCCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCC--------CceEEEecCCCc---cCceeECCCCC-EEEEEE
Confidence            4577889999999999 566665533   4799999976        222223333333   34689999998 5555 4


Q ss_pred             eCCCcEEEE--eCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCC
Q 020480          198 SDDAQICLW--DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (325)
Q Consensus       198 s~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~  275 (325)
                      +.+|.+.||  |+..+       ....+..+...+...+|+|++..+++++..+|..+||++.....  ....+ .+.. 
T Consensus       267 ~~~g~~~Iy~~d~~~~-------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~--~~~~l-~~~~-  335 (429)
T PRK01742        267 SKDGVLNIYVMGANGG-------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG--GASLV-GGRG-  335 (429)
T ss_pred             ecCCcEEEEEEECCCC-------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC--CeEEe-cCCC-
Confidence            578876666  55443       13345556667888999999865555666788999998875432  12222 3333 


Q ss_pred             eeEEEeCCCCCc--cCCCCceEEeeec
Q 020480          276 VGVSILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       276 v~~i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                       .+.+|+|+|+.  ..+.+..+. |++
T Consensus       336 -~~~~~SpDG~~ia~~~~~~i~~-~Dl  360 (429)
T PRK01742        336 -YSAQISADGKTLVMINGDNVVK-QDL  360 (429)
T ss_pred             -CCccCCCCCCEEEEEcCCCEEE-EEC
Confidence             45789999984  333344444 553

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.10  E-value=5.5e-11  Score=101.97  Aligned_cols=162  Identities=13%  Similarity=0.171  Sum_probs=132.0

Q ss_pred             EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480          118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (325)
Q Consensus       118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  197 (325)
                      +...+.-...|.++.|-... .+||++ ....++|||-..           ..++-+..| ..|..+.|-|..- +|+++
T Consensus       163 L~~Ei~v~Etv~Dv~~LHne-q~~AVA-QK~y~yvYD~~G-----------tElHClk~~-~~v~rLeFLPyHf-LL~~~  227 (545)
T KOG1272|consen  163 LHFEINVMETVRDVTFLHNE-QFFAVA-QKKYVYVYDNNG-----------TELHCLKRH-IRVARLEFLPYHF-LLVAA  227 (545)
T ss_pred             eeeeeehhhhhhhhhhhcch-HHHHhh-hhceEEEecCCC-----------cEEeehhhc-Cchhhhcccchhh-eeeec
Confidence            33455566788888888765 677775 456899999765           334445544 4688999999876 89999


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG  277 (325)
Q Consensus       198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  277 (325)
                      +..|.++.-|+..++      .+..+....+.+..++-+|-+ .++-.|...|+|.+|...+.+   |+..+-.|.++|.
T Consensus       228 ~~~G~L~Y~DVS~Gk------lVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~ske---PLvKiLcH~g~V~  297 (545)
T KOG1272|consen  228 SEAGFLKYQDVSTGK------LVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKE---PLVKILCHRGPVS  297 (545)
T ss_pred             ccCCceEEEeechhh------hhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcc---hHHHHHhcCCCcc
Confidence            999999999999984      455566667788889999987 588899999999999998877   5777788999999


Q ss_pred             EEEeCCCCCc--cCCCCceEEeeecceee
Q 020480          278 VSILNASFRL--SHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       278 ~i~~~p~~~~--~~~~d~~~~~~~~~~~~  304 (325)
                      +|+++++|.+  +.|.|..+++||+|.+.
T Consensus       298 siAv~~~G~YMaTtG~Dr~~kIWDlR~~~  326 (545)
T KOG1272|consen  298 SIAVDRGGRYMATTGLDRKVKIWDLRNFY  326 (545)
T ss_pred             eEEECCCCcEEeecccccceeEeeecccc
Confidence            9999999996  88999999999999875

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.07  E-value=1.5e-09  Score=98.22  Aligned_cols=162  Identities=17%  Similarity=0.295  Sum_probs=125.6

Q ss_pred             CCCeeEEEecCCCC-cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          125 DGEVNRARYMPQNP-FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       125 ~~~v~~v~~~~~~~-~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      +-.|..+.|+|... .+-++......-.+|++....       .....+.+-+|+.+|+++.|+|+.+..+++++.|..+
T Consensus        67 pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss-------~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~v  139 (1081)
T KOG0309|consen   67 PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS-------SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYV  139 (1081)
T ss_pred             cchhcceecccCCCCceeEEecCcchhhhhhhhcCC-------ccceEEEEecCccceeccccCCCCCcceeeccccccc
Confidence            45677888998631 244444556667789987521       1233456779999999999999999999999999999


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCC
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNA  283 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p  283 (325)
                      ..||++....     ++..+..-......|.|+...++.+ +.+....|++||+|.+..  |+..+++|...|+.++|+.
T Consensus       140 h~wd~rSp~~-----p~ys~~~w~s~asqVkwnyk~p~vl-asshg~~i~vwd~r~gs~--pl~s~K~~vs~vn~~~fnr  211 (1081)
T KOG0309|consen  140 HAWDMRSPHR-----PFYSTSSWRSAASQVKWNYKDPNVL-ASSHGNDIFVWDLRKGST--PLCSLKGHVSSVNSIDFNR  211 (1081)
T ss_pred             eeeeccCCCc-----ceeeeecccccCceeeecccCcchh-hhccCCceEEEeccCCCc--ceEEecccceeeehHHHhh
Confidence            9999998753     4555555556677899998887666 456677899999999886  8999999999999999986


Q ss_pred             C--CC-ccCCCCceEEeeecc
Q 020480          284 S--FR-LSHEDTCTCTHRHSR  301 (325)
Q Consensus       284 ~--~~-~~~~~d~~~~~~~~~  301 (325)
                      .  ++ ++.+.|++++.|+..
T Consensus       212 ~~~s~~~s~~~d~tvkfw~y~  232 (1081)
T KOG0309|consen  212 FKYSEIMSSSNDGTVKFWDYS  232 (1081)
T ss_pred             hhhhhhcccCCCCceeeeccc
Confidence            3  33 488999999999763

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.05  E-value=4e-08  Score=89.03  Aligned_cols=139  Identities=14%  Similarity=0.141  Sum_probs=84.7

Q ss_pred             CCCeeEEEecCCCCcEEEEEecCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe-CCC
Q 020480          125 DGEVNRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-DDA  201 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg  201 (325)
                      .+.+....|+|+|..++++.+.+|  .|++||+..        +   ....+..+...+....|+|++. .|+.++ .++
T Consensus       242 ~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t--------g---~~~~lt~~~~~~~~~~wSPDG~-~I~f~s~~~g  309 (429)
T PRK03629        242 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS--------G---QIRQVTDGRSNNTEPTWFPDSQ-NLAYTSDQAG  309 (429)
T ss_pred             CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC--------C---CEEEccCCCCCcCceEECCCCC-EEEEEeCCCC
Confidence            344556899999954444545555  588889876        2   1233444445678899999998 565554 445


Q ss_pred             cEEEE--eCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC--CcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480          202 QICLW--DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD--QYLLIWDLRTPSVSKPVQSVVAHQSEVG  277 (325)
Q Consensus       202 ~i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~  277 (325)
                      ...||  |+..+.       ...+..........+|+|+|..+++++..+  ..|.+||+.++.    ...+.. .....
T Consensus       310 ~~~Iy~~d~~~g~-------~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~----~~~Lt~-~~~~~  377 (429)
T PRK03629        310 RPQVYKVNINGGA-------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----VQVLTD-TFLDE  377 (429)
T ss_pred             CceEEEEECCCCC-------eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC----eEEeCC-CCCCC
Confidence            55555  555432       222333344456789999985444444333  348888988776    333322 12234


Q ss_pred             EEEeCCCCCc
Q 020480          278 VSILNASFRL  287 (325)
Q Consensus       278 ~i~~~p~~~~  287 (325)
                      ...|+|+|+.
T Consensus       378 ~p~~SpDG~~  387 (429)
T PRK03629        378 TPSIAPNGTM  387 (429)
T ss_pred             CceECCCCCE
Confidence            6789999984

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.03  E-value=7.4e-09  Score=91.36  Aligned_cols=140  Identities=19%  Similarity=0.191  Sum_probs=104.1

Q ss_pred             CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE------ecCC-----CceEEEEecCCCCCe
Q 020480          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL------RGHS-----TEGYGLSWSKFKEGH  193 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~------~~h~-----~~v~~l~~~p~~~~~  193 (325)
                      .++++++..++.+ .+||+|+.+|.|..||.+.-          ..+.++      ..|.     ..|+++.|+-+|- .
T Consensus       175 ~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~k----------srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~  242 (703)
T KOG2321|consen  175 SGELNVVSINEEH-GLLACGTEDGVVEFWDPRDK----------SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-H  242 (703)
T ss_pred             cccceeeeecCcc-ceEEecccCceEEEecchhh----------hhheeeecccccCCCccccccCcceEEEecCCce-e
Confidence            3889999999988 69999999999999999871          112222      2233     3499999999887 7


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceEe-eecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc
Q 020480          194 LLSGSDDAQICLWDINAAPKNKSLEAMQI-FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH  272 (325)
Q Consensus       194 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h  272 (325)
                      ++.|..+|.+.|||+++..      ++.. -.+...+|..+.|.+.+..--+.......++|||-.+++.   +..+.. 
T Consensus       243 ~aVGts~G~v~iyDLRa~~------pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~---~asiEp-  312 (703)
T KOG2321|consen  243 VAVGTSTGSVLIYDLRASK------PLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP---MASIEP-  312 (703)
T ss_pred             EEeeccCCcEEEEEcccCC------ceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCc---eeeccc-
Confidence            9999999999999999873      2322 2234457889999776433333445577899999999983   666653 


Q ss_pred             CCCeeEEEeCCCCC
Q 020480          273 QSEVGVSILNASFR  286 (325)
Q Consensus       273 ~~~v~~i~~~p~~~  286 (325)
                      ...++.+++-|++-
T Consensus       313 t~~lND~C~~p~sG  326 (703)
T KOG2321|consen  313 TSDLNDFCFVPGSG  326 (703)
T ss_pred             cCCcCceeeecCCc
Confidence            55699999998754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.03  E-value=5e-08  Score=88.67  Aligned_cols=139  Identities=15%  Similarity=0.134  Sum_probs=86.3

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe-CC
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-DD  200 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~d  200 (325)
                      +.+...+.+|+|+|..++++.+.+|  .|++|++..        +.   ...+..+.......+|+|++. .++.++ .+
T Consensus       246 ~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~--------g~---~~~lt~~~~~~~~~~~spDG~-~l~f~sd~~  313 (433)
T PRK04922        246 FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS--------RQ---LTRLTNHFGIDTEPTWAPDGK-SIYFTSDRG  313 (433)
T ss_pred             CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCC--------CC---eEECccCCCCccceEECCCCC-EEEEEECCC
Confidence            3455567899999965555656555  588999876        22   334445555567889999998 555544 55


Q ss_pred             Cc--EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe-cCC--cEEEEEccCCCCCCCeeEeeccCCC
Q 020480          201 AQ--ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DDQ--YLLIWDLRTPSVSKPVQSVVAHQSE  275 (325)
Q Consensus       201 g~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~h~~~  275 (325)
                      |.  |.++|+..+.       ...+..+.......+|+|++. .++..+ .++  .|.+||+.++..    ..+. +...
T Consensus       314 g~~~iy~~dl~~g~-------~~~lt~~g~~~~~~~~SpDG~-~Ia~~~~~~~~~~I~v~d~~~g~~----~~Lt-~~~~  380 (433)
T PRK04922        314 GRPQIYRVAASGGS-------AERLTFQGNYNARASVSPDGK-KIAMVHGSGGQYRIAVMDLSTGSV----RTLT-PGSL  380 (433)
T ss_pred             CCceEEEEECCCCC-------eEEeecCCCCccCEEECCCCC-EEEEEECCCCceeEEEEECCCCCe----EECC-CCCC
Confidence            55  5555665442       111222223345689999985 554443 333  589999987662    3332 2234


Q ss_pred             eeEEEeCCCCCc
Q 020480          276 VGVSILNASFRL  287 (325)
Q Consensus       276 v~~i~~~p~~~~  287 (325)
                      .....|+|+|+.
T Consensus       381 ~~~p~~spdG~~  392 (433)
T PRK04922        381 DESPSFAPNGSM  392 (433)
T ss_pred             CCCceECCCCCE
Confidence            456799999984

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=4e-08  Score=89.07  Aligned_cols=144  Identities=12%  Similarity=0.067  Sum_probs=87.3

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      ..+.+....|+|+|..++++.+.+|...||.+...         ......+..+........|+|++..+++++..+|..
T Consensus       238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~---------~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~  308 (427)
T PRK02889        238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD---------GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAP  308 (427)
T ss_pred             CCCCccceEECCCCCEEEEEEccCCCceEEEEECC---------CCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCc
Confidence            44566788999999555556777887777665431         012334444555567789999999444444455777


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC---cEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ---YLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      .+|.+.....    . ...+..........+|+|+|. .++..+.++   .|.+||+.++..    ..+.. ........
T Consensus       309 ~Iy~~~~~~g----~-~~~lt~~g~~~~~~~~SpDG~-~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt~-~~~~~~p~  377 (427)
T PRK02889        309 QIYRMPASGG----A-AQRVTFTGSYNTSPRISPDGK-LLAYISRVGGAFKLYVQDLATGQV----TALTD-TTRDESPS  377 (427)
T ss_pred             EEEEEECCCC----c-eEEEecCCCCcCceEECCCCC-EEEEEEccCCcEEEEEEECCCCCe----EEccC-CCCccCce
Confidence            7776643211    1 111111223344678999985 665555443   599999987762    33322 22346789


Q ss_pred             eCCCCCc
Q 020480          281 LNASFRL  287 (325)
Q Consensus       281 ~~p~~~~  287 (325)
                      |+|+|+.
T Consensus       378 ~spdg~~  384 (427)
T PRK02889        378 FAPNGRY  384 (427)
T ss_pred             ECCCCCE
Confidence            9999984

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.00  E-value=9e-08  Score=87.11  Aligned_cols=140  Identities=14%  Similarity=0.171  Sum_probs=89.1

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCe--EEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe-C
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAE--VYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-D  199 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~  199 (325)
                      .+.+.+...+|+|+|..++++.+.++.  |++||+..        +   ....+..+........|+|++. .++..+ .
T Consensus       243 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~--------~---~~~~Lt~~~~~~~~~~~spDG~-~i~f~s~~  310 (435)
T PRK05137        243 NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS--------G---TTTRLTDSPAIDTSPSYSPDGS-QIVFESDR  310 (435)
T ss_pred             cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC--------C---ceEEccCCCCccCceeEcCCCC-EEEEEECC
Confidence            456677889999999655566666665  67778765        2   2344555656667899999998 555554 4


Q ss_pred             CC--cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec-C--CcEEEEEccCCCCCCCeeEeeccCC
Q 020480          200 DA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-D--QYLLIWDLRTPSVSKPVQSVVAHQS  274 (325)
Q Consensus       200 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~~h~~  274 (325)
                      +|  .|+++|+..+.       .+.+..+...+....|+|++. .|+..+. .  ..|.+||+....    ...+. ...
T Consensus       311 ~g~~~Iy~~d~~g~~-------~~~lt~~~~~~~~~~~SpdG~-~ia~~~~~~~~~~i~~~d~~~~~----~~~lt-~~~  377 (435)
T PRK05137        311 SGSPQLYVMNADGSN-------PRRISFGGGRYSTPVWSPRGD-LIAFTKQGGGQFSIGVMKPDGSG----ERILT-SGF  377 (435)
T ss_pred             CCCCeEEEEECCCCC-------eEEeecCCCcccCeEECCCCC-EEEEEEcCCCceEEEEEECCCCc----eEecc-CCC
Confidence            44  57777876542       223333345567788999985 5544443 3  357788875543    22222 223


Q ss_pred             CeeEEEeCCCCCc
Q 020480          275 EVGVSILNASFRL  287 (325)
Q Consensus       275 ~v~~i~~~p~~~~  287 (325)
                      .+..+.|+|+|+.
T Consensus       378 ~~~~p~~spDG~~  390 (435)
T PRK05137        378 LVEGPTWAPNGRV  390 (435)
T ss_pred             CCCCCeECCCCCE
Confidence            4677899999984

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.00  E-value=3.1e-08  Score=90.14  Aligned_cols=142  Identities=11%  Similarity=0.096  Sum_probs=96.6

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEec---CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTV---SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      ..|.+.+...+|+|+| +.|+..+.   +..|++|++..        +.   ...+..+.+.+...+|+|++..++++.+
T Consensus       198 t~~~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~--------g~---~~~l~~~~g~~~~~~~SPDG~~la~~~~  265 (435)
T PRK05137        198 TDGSSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLET--------GQ---RELVGNFPGMTFAPRFSPDGRKVVMSLS  265 (435)
T ss_pred             ecCCCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCC--------Cc---EEEeecCCCcccCcEECCCCCEEEEEEe
Confidence            3577789999999999 46665442   46899999976        22   2334456667788999999985556777


Q ss_pred             CCCc--EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe-cCC--cEEEEEccCCCCCCCeeEeeccC
Q 020480          199 DDAQ--ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DDQ--YLLIWDLRTPSVSKPVQSVVAHQ  273 (325)
Q Consensus       199 ~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~h~  273 (325)
                      .++.  |.+||+..+.       ...+..+.......+|+|++. .++..+ .+|  .|+++|+..+.    ...+..+.
T Consensus       266 ~~g~~~Iy~~d~~~~~-------~~~Lt~~~~~~~~~~~spDG~-~i~f~s~~~g~~~Iy~~d~~g~~----~~~lt~~~  333 (435)
T PRK05137        266 QGGNTDIYTMDLRSGT-------TTRLTDSPAIDTSPSYSPDGS-QIVFESDRSGSPQLYVMNADGSN----PRRISFGG  333 (435)
T ss_pred             cCCCceEEEEECCCCc-------eEEccCCCCccCceeEcCCCC-EEEEEECCCCCCeEEEEECCCCC----eEEeecCC
Confidence            7666  6677887652       334455555567789999985 454444 444  57777876554    34444345


Q ss_pred             CCeeEEEeCCCCCc
Q 020480          274 SEVGVSILNASFRL  287 (325)
Q Consensus       274 ~~v~~i~~~p~~~~  287 (325)
                      ..+....|+|+|+.
T Consensus       334 ~~~~~~~~SpdG~~  347 (435)
T PRK05137        334 GRYSTPVWSPRGDL  347 (435)
T ss_pred             CcccCeEECCCCCE
Confidence            56777899999984

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.99  E-value=7.3e-09  Score=97.11  Aligned_cols=121  Identities=15%  Similarity=0.265  Sum_probs=100.4

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      +..+|.+.|.++.++.+| .++++.+.|.++++|++.+.        +. .....-+|+..|+.+.++|.   .++|++.
T Consensus       170 ~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~--------~~-~~~~~fgHsaRvw~~~~~~n---~i~t~ge  236 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSR--------EV-LGCTGFGHSARVWACCFLPN---RIITVGE  236 (967)
T ss_pred             eecccCCceEEEEEccCC-cEEEEEecCcceeeeecccc--------cc-cCcccccccceeEEEEeccc---eeEEecc
Confidence            678999999999999999 79999999999999999872        21 12345589999999999987   6999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCC-ccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHE-GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~  261 (325)
                      |.++++|+....       .+..+..|. ..++.++..+.. ..++|++.|+.+++||+....
T Consensus       237 dctcrvW~~~~~-------~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  237 DCTCRVWGVNGT-------QLEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             ceEEEEEecccc-------eehhhhhhhhcceeEEEEcCCc-eEEEeeccCcchhhhhhhccc
Confidence            999999976643       234666665 468999988865 688999999999999987643

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.99  E-value=4e-09  Score=85.84  Aligned_cols=170  Identities=16%  Similarity=0.042  Sum_probs=114.4

Q ss_pred             CCceEEEE-EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE-EEecCCCceEEEEecCCC
Q 020480          113 NGKVQIIQ-QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-RLRGHSTEGYGLSWSKFK  190 (325)
Q Consensus       113 ~~~~~~~~-~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~  190 (325)
                      .+.++..+ ...|.-++....|+...++++.+|+.|+.+..||++.+        . +.+. ..+-|+..|.++.-+|..
T Consensus       152 ~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p--------~-~~i~~n~kvH~~GV~SI~ss~~~  222 (339)
T KOG0280|consen  152 EMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP--------K-TFIWHNSKVHTSGVVSIYSSPPK  222 (339)
T ss_pred             eeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC--------c-ceeeecceeeecceEEEecCCCC
Confidence            34444333 33599999999999988899999999999999999841        1 1122 245688999999999988


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC--CCeeE
Q 020480          191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS--KPVQS  268 (325)
Q Consensus       191 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~  268 (325)
                      +..++||+.|-.|++||.|...+     ++.. ..-.+.|+.+.++|.....+..++.-.-.+|-+.......  .....
T Consensus       223 ~~~I~TGsYDe~i~~~DtRnm~k-----Pl~~-~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s  296 (339)
T KOG0280|consen  223 PTYIATGSYDECIRVLDTRNMGK-----PLFK-AKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPS  296 (339)
T ss_pred             CceEEEeccccceeeeehhcccC-----cccc-CccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeec
Confidence            88999999999999999996543     2222 1234789999999965444444444444677776654421  01223


Q ss_pred             eeccCCCeeEEEeCCCCCccCCCCceEEeeecc
Q 020480          269 VVAHQSEVGVSILNASFRLSHEDTCTCTHRHSR  301 (325)
Q Consensus       269 ~~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~~  301 (325)
                      .+.|.+-+..-.|+..    .+.-.+|++++.+
T Consensus       297 ~~~hdSl~YG~DWd~~----~~~lATCsFYDk~  325 (339)
T KOG0280|consen  297 DKIHDSLCYGGDWDSK----DSFLATCSFYDKK  325 (339)
T ss_pred             cccccceeeccccccc----cceeeeeeccccc
Confidence            3556666666666332    2233456666655

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.98  E-value=3.5e-08  Score=91.13  Aligned_cols=165  Identities=14%  Similarity=0.135  Sum_probs=121.8

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      .|.-.+++.+++|.+ +++|+|..||+|.+|.--...      +.......+.=|...|.++.|+++|. .|+||+..|.
T Consensus       203 ~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~------~~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~V  274 (792)
T KOG1963|consen  203 HHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSS------DDSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGV  274 (792)
T ss_pred             hhcccceeEEecccc-ceEEEeccCCcEEEEeccccc------cccccceEEEecccccceeEEecCCc-eEeecccceE
Confidence            366778999999988 799999999999999754311      11222445667889999999999999 8999999999


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc--------CC
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH--------QS  274 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h--------~~  274 (325)
                      +-+|.+.++++       +-+..-.+.|..+.++|++ .+.+....|..|.+-...+......+..+...        .+
T Consensus       275 Lv~Wq~~T~~k-------qfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~  346 (792)
T KOG1963|consen  275 LVLWQLETGKK-------QFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS  346 (792)
T ss_pred             EEEEeecCCCc-------ccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccc
Confidence            99999998753       2234456789999999997 57778888999999988665432223333222        34


Q ss_pred             CeeEEEeCCC-CC-ccCCCCceEEeeeccee
Q 020480          275 EVGVSILNAS-FR-LSHEDTCTCTHRHSRYL  303 (325)
Q Consensus       275 ~v~~i~~~p~-~~-~~~~~d~~~~~~~~~~~  303 (325)
                      -.+.++++|. +. +..+.-+.+.+++....
T Consensus       347 l~t~~~idpr~~~~vln~~~g~vQ~ydl~td  377 (792)
T KOG1963|consen  347 LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTD  377 (792)
T ss_pred             cceeEEEcCCCCceeecCCCceEEEEecccc
Confidence            5677888883 33 25667788888776443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.97  E-value=6e-09  Score=86.59  Aligned_cols=190  Identities=15%  Similarity=0.190  Sum_probs=125.9

Q ss_pred             CCCceEEEEEeccCCCeeEEEecCCC-CcEEEEEecCCeEEEEeCCCCCCCCC-----CCC--------------C----
Q 020480          112 ANGKVQIIQQINHDGEVNRARYMPQN-PFLIATKTVSAEVYVFDYSKHPSKPP-----LDG--------------A----  167 (325)
Q Consensus       112 ~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~la~g~~dg~v~vwd~~~~~~~~~-----~~~--------------~----  167 (325)
                      .+|.+...+.+.-...|+.++|.+++ ...+...+.|.+|++|.+........     ..+              .    
T Consensus        71 hepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~  150 (433)
T KOG1354|consen   71 HEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLE  150 (433)
T ss_pred             cCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccce
Confidence            45666666677778899999999875 24566668999999998865322110     000              0    


Q ss_pred             --CCCcEEE-ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEe--eecCCccEEEEEeecCCCcE
Q 020480          168 --CSPDLRL-RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI--FKVHEGVVEDVAWHLRHEYL  242 (325)
Q Consensus       168 --~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~  242 (325)
                        ..|.+.+ .+|+-.|.++.++.++. .++++. |=.|.+|++........+.-+..  +..-+.-|++..|||...++
T Consensus       151 vea~prRv~aNaHtyhiNSIS~NsD~E-t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~  228 (433)
T KOG1354|consen  151 VEASPRRVYANAHTYHINSISVNSDKE-TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNV  228 (433)
T ss_pred             eeeeeeeeccccceeEeeeeeecCccc-eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccE
Confidence              0011111 25788899999999988 677654 77899999987654432211111  11223568899999998899


Q ss_pred             EEEEecCCcEEEEEccCCCCC-CC--ee----------EeeccCCCeeEEEeCCCCCccCCCC-ceEEeeeccee
Q 020480          243 FGSVGDDQYLLIWDLRTPSVS-KP--VQ----------SVVAHQSEVGVSILNASFRLSHEDT-CTCTHRHSRYL  303 (325)
Q Consensus       243 l~s~~~dg~i~iwd~~~~~~~-~~--~~----------~~~~h~~~v~~i~~~p~~~~~~~~d-~~~~~~~~~~~  303 (325)
                      |+-.+..|+|++-|+|..... ..  +.          -+..--+.|..+.|+++|++.-+.| .++++||+.+-
T Consensus       229 f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme  303 (433)
T KOG1354|consen  229 FVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNME  303 (433)
T ss_pred             EEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEecccc
Confidence            999999999999999954310 00  00          0111235788999999999744444 89999998543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.96  E-value=1.2e-08  Score=90.26  Aligned_cols=193  Identities=18%  Similarity=0.181  Sum_probs=141.0

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcC-CCCCceEEEEeeCCCCC----------CCCCcceEEEEEEecCCCCCCCeEEEEEE
Q 020480           17 INEEYKIWKKNTPFLYDLVITHA-LEWPSLTVEWLPDREEP----------PGKDYSVQKMILGTHTSENEPNYLMLAQV   85 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~-~~~p~~s~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~i~~~   85 (325)
                      .+..+|||......+|+-+.... +.-.|....|--.....          ...+..+..++.|+...     .+.++++
T Consensus        13 ~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g-----~v~~ys~   87 (541)
T KOG4547|consen   13 GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG-----SVLLYSV   87 (541)
T ss_pred             CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc-----cEEEEEe
Confidence            45788999999888886554443 23346666665222111          11233345566776543     3555544


Q ss_pred             ECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEE-eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCC
Q 020480           86 QLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQ-INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPL  164 (325)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~  164 (325)
                      .                          .+.+..... -.|.+.|+++.++.+- ..|.+++.|+.+..|+...       
T Consensus        88 ~--------------------------~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~-------  133 (541)
T KOG4547|consen   88 A--------------------------GGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKE-------  133 (541)
T ss_pred             c--------------------------CCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEeccc-------
Confidence            2                          334443222 3599999999999876 6899999999999999987       


Q ss_pred             CCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecC-----C
Q 020480          165 DGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR-----H  239 (325)
Q Consensus       165 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~-----~  239 (325)
                         ....+........+.+++.+|++. .+++|+  +.|++||+++.      ..+..|.+|.+.|.+++|-..     |
T Consensus       134 ---~~~~~~~~~~~~~~~sl~is~D~~-~l~~as--~~ik~~~~~~k------evv~~ftgh~s~v~t~~f~~~~~g~~G  201 (541)
T KOG4547|consen  134 ---KVIIRIWKEQKPLVSSLCISPDGK-ILLTAS--RQIKVLDIETK------EVVITFTGHGSPVRTLSFTTLIDGIIG  201 (541)
T ss_pred             ---ceeeeeeccCCCccceEEEcCCCC-EEEecc--ceEEEEEccCc------eEEEEecCCCcceEEEEEEEecccccc
Confidence               455677778888899999999988 788877  78999999987      568899999999999999876     6


Q ss_pred             CcEEEEEecCCcEEEEEccCC
Q 020480          240 EYLFGSVGDDQYLLIWDLRTP  260 (325)
Q Consensus       240 ~~~l~s~~~dg~i~iwd~~~~  260 (325)
                      ..+|.+...+..+.+|-++..
T Consensus       202 ~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  202 KYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             ceeeeccccccceeEEEEEcc
Confidence            677878888888999988763

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.95  E-value=6.8e-08  Score=87.82  Aligned_cols=142  Identities=12%  Similarity=0.112  Sum_probs=91.1

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEec---CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTV---SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      .+...+...+|+|+| +.|+..+.   ...|++|++..        +..   ..+..+.+......|+|++..++++.+.
T Consensus       201 ~~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~--------g~~---~~l~~~~g~~~~~~~SpDG~~l~~~~s~  268 (433)
T PRK04922        201 RSAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLAT--------GQR---ELVASFRGINGAPSFSPDGRRLALTLSR  268 (433)
T ss_pred             cCCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCC--------CCE---EEeccCCCCccCceECCCCCEEEEEEeC
Confidence            466778899999999 56665553   34799999976        222   2233334445578999999855556666


Q ss_pred             CC--cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc--EEEEEccCCCCCCCeeEeeccCCC
Q 020480          200 DA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSE  275 (325)
Q Consensus       200 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~  275 (325)
                      +|  .|++||+.++.       ...+..+.......+|+|++..++.+...+|.  |.++|+.+++    ...+..+...
T Consensus       269 ~g~~~Iy~~d~~~g~-------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~----~~~lt~~g~~  337 (433)
T PRK04922        269 DGNPEIYVMDLGSRQ-------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS----AERLTFQGNY  337 (433)
T ss_pred             CCCceEEEEECCCCC-------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----eEEeecCCCC
Confidence            66  59999988653       23344455555678999998544444445555  5555655544    3333223344


Q ss_pred             eeEEEeCCCCCc
Q 020480          276 VGVSILNASFRL  287 (325)
Q Consensus       276 v~~i~~~p~~~~  287 (325)
                      ...++|+|+|+.
T Consensus       338 ~~~~~~SpDG~~  349 (433)
T PRK04922        338 NARASVSPDGKK  349 (433)
T ss_pred             ccCEEECCCCCE
Confidence            557899999984

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.94  E-value=3.4e-07  Score=83.01  Aligned_cols=143  Identities=8%  Similarity=0.062  Sum_probs=90.0

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEe---cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480          122 INHDGEVNRARYMPQNPFLIATKT---VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      ..+...+...+|+|+| +.||..+   .+..|.+|++..        +....+..+.+   .+....|+|++..++++.+
T Consensus       195 t~~~~~~~~p~wSPDG-~~la~~s~~~g~~~i~i~dl~~--------G~~~~l~~~~~---~~~~~~~SPDG~~La~~~~  262 (429)
T PRK03629        195 HRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLAN--------GAVRQVASFPR---HNGAPAFSPDGSKLAFALS  262 (429)
T ss_pred             ecCCCceeeeEEcCCC-CEEEEEEecCCCcEEEEEECCC--------CCeEEccCCCC---CcCCeEECCCCCEEEEEEc
Confidence            3466789999999999 4555433   245799999876        32222222333   3456899999994444545


Q ss_pred             CCC--cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEE--EccCCCCCCCeeEeeccCC
Q 020480          199 DDA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW--DLRTPSVSKPVQSVVAHQS  274 (325)
Q Consensus       199 ~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~h~~  274 (325)
                      .+|  .|++||+.++.       ...+..+...+...+|+|++..++.+...++...||  |+.++.    ...+..+..
T Consensus       263 ~~g~~~I~~~d~~tg~-------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~----~~~lt~~~~  331 (429)
T PRK03629        263 KTGSLNLYVMDLASGQ-------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA----PQRITWEGS  331 (429)
T ss_pred             CCCCcEEEEEECCCCC-------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC----eEEeecCCC
Confidence            555  48889998652       223333445677899999985444444445555666  454443    344433444


Q ss_pred             CeeEEEeCCCCCc
Q 020480          275 EVGVSILNASFRL  287 (325)
Q Consensus       275 ~v~~i~~~p~~~~  287 (325)
                      ......|+|+|+.
T Consensus       332 ~~~~~~~SpDG~~  344 (429)
T PRK03629        332 QNQDADVSSDGKF  344 (429)
T ss_pred             CccCEEECCCCCE
Confidence            5667899999984

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.92  E-value=9.4e-08  Score=84.76  Aligned_cols=126  Identities=13%  Similarity=0.138  Sum_probs=104.9

Q ss_pred             CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcc
Q 020480          138 PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL  217 (325)
Q Consensus       138 ~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  217 (325)
                      ...++-|...|.|.+|++..        +.......-..|.+.|..+.|+.+-. .|.|++.|+.+..|+....      
T Consensus        70 t~~lvlgt~~g~v~~ys~~~--------g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~------  134 (541)
T KOG4547|consen   70 TSMLVLGTPQGSVLLYSVAG--------GEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEK------  134 (541)
T ss_pred             ceEEEeecCCccEEEEEecC--------CeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccc------
Confidence            35788899999999999987        33322222247899999999998776 8999999999999999887      


Q ss_pred             cceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCC
Q 020480          218 EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNAS  284 (325)
Q Consensus       218 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~  284 (325)
                      ..++.+.+....+.+++.+|++ ..+++++  +.|++||+.+.+.   +..+.+|.++|++++|--.
T Consensus       135 ~~~~~~~~~~~~~~sl~is~D~-~~l~~as--~~ik~~~~~~kev---v~~ftgh~s~v~t~~f~~~  195 (541)
T KOG4547|consen  135 VIIRIWKEQKPLVSSLCISPDG-KILLTAS--RQIKVLDIETKEV---VITFTGHGSPVRTLSFTTL  195 (541)
T ss_pred             eeeeeeccCCCccceEEEcCCC-CEEEecc--ceEEEEEccCceE---EEEecCCCcceEEEEEEEe
Confidence            4577778888899999999997 4776665  5799999999995   8999999999999999765

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.92  E-value=8.5e-08  Score=86.96  Aligned_cols=146  Identities=13%  Similarity=0.141  Sum_probs=91.3

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEec---CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTV---SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      .+...+.+.+|+|+| +.|+..+.   ...|.+||+..        +..   ..+....+.+....|+|++..++++.+.
T Consensus       193 ~~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~--------g~~---~~l~~~~g~~~~~~~SPDG~~la~~~~~  260 (427)
T PRK02889        193 SSPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLAT--------GRR---RVVANFKGSNSAPAWSPDGRTLAVALSR  260 (427)
T ss_pred             cCCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCC--------CCE---EEeecCCCCccceEECCCCCEEEEEEcc
Confidence            466788899999999 56665543   24699999976        222   2233334456689999999844456788


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS  279 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i  279 (325)
                      +|...||.+.....     ....+..+........|+|+|..+++++..+|...+|.+.....  ....+..........
T Consensus       261 ~g~~~Iy~~d~~~~-----~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g--~~~~lt~~g~~~~~~  333 (427)
T PRK02889        261 DGNSQIYTVNADGS-----GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG--AAQRVTFTGSYNTSP  333 (427)
T ss_pred             CCCceEEEEECCCC-----CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC--ceEEEecCCCCcCce
Confidence            88877776543211     13334445555667889999864544544567777887653221  123322223334567


Q ss_pred             EeCCCCCc
Q 020480          280 ILNASFRL  287 (325)
Q Consensus       280 ~~~p~~~~  287 (325)
                      +|+|+|+.
T Consensus       334 ~~SpDG~~  341 (427)
T PRK02889        334 RISPDGKL  341 (427)
T ss_pred             EECCCCCE
Confidence            89999984

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=3.7e-08  Score=83.89  Aligned_cols=131  Identities=16%  Similarity=0.207  Sum_probs=95.9

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC----------------CCC------------CCCCc
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP----------------LDG------------ACSPD  171 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~----------------~~~------------~~~~~  171 (325)
                      ....|.+.|.++.|+|++ ++|++-+.| ..+||+.........                .+.            ....+
T Consensus       181 ~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v  258 (398)
T KOG0771|consen  181 EEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGV  258 (398)
T ss_pred             hhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCce
Confidence            356799999999999999 799998989 999999987511000                000            00000


Q ss_pred             EE--E--------------ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEe
Q 020480          172 LR--L--------------RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAW  235 (325)
Q Consensus       172 ~~--~--------------~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~  235 (325)
                      ..  +              ..-...|++++.+++|. +++.|+.||.|.|++....+.     .....+.|...|+.+.|
T Consensus       259 ~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-f~AlGT~dGsVai~~~~~lq~-----~~~vk~aH~~~VT~ltF  332 (398)
T KOG0771|consen  259 RLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-FLALGTMDGSVAIYDAKSLQR-----LQYVKEAHLGFVTGLTF  332 (398)
T ss_pred             eEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-EEEEeccCCcEEEEEeceeee-----eEeehhhheeeeeeEEE
Confidence            00  0              00123689999999999 999999999999999987642     22334679999999999


Q ss_pred             ecCCCcEEEEEecCCcEEEEEccC
Q 020480          236 HLRHEYLFGSVGDDQYLLIWDLRT  259 (325)
Q Consensus       236 ~p~~~~~l~s~~~dg~i~iwd~~~  259 (325)
                      +|+. +++++-+.|....|.-+..
T Consensus       333 ~Pds-r~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  333 SPDS-RYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             cCCc-CcccccccCCceeEEEEee
Confidence            9985 7888888888888877765

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.89  E-value=2.5e-08  Score=86.42  Aligned_cols=171  Identities=16%  Similarity=0.213  Sum_probs=123.1

Q ss_pred             EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCC---ceEEEEecCCCCCe
Q 020480          118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHST---EGYGLSWSKFKEGH  193 (325)
Q Consensus       118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~---~v~~l~~~p~~~~~  193 (325)
                      ......|.++|.-++.-|..++-|.+++.|+.|.-+|++...        ........ .+..   ...+++..|...+.
T Consensus       225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~--------pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~  296 (559)
T KOG1334|consen  225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDV--------PAEKFVCREADEKERVGLYTIAVDPRNTNE  296 (559)
T ss_pred             ceecccccCccceeeecCCCCCcccccccccceeeeeeccCC--------ccceeeeeccCCccceeeeeEecCCCCccc
Confidence            345567999999999999998999999999999999998721        11122222 2333   56889999999889


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCc-------------------c-------------------------------------
Q 020480          194 LLSGSDDAQICLWDINAAPKNKS-------------------L-------------------------------------  217 (325)
Q Consensus       194 l~s~s~dg~i~iwd~~~~~~~~~-------------------~-------------------------------------  217 (325)
                      +++|+.|..+++||.+...+...                   +                                     
T Consensus       297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~  376 (559)
T KOG1334|consen  297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS  376 (559)
T ss_pred             cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence            99999999999999765422100                   0                                     


Q ss_pred             ----c-ceEeeecCCc--cEEEEEee-cCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--
Q 020480          218 ----E-AMQIFKVHEG--VVEDVAWH-LRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--  287 (325)
Q Consensus       218 ----~-~~~~~~~~~~--~v~~v~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--  287 (325)
                          . ..+.+++|.+  .|..+-|- |. ..++++|+.=|.|.||+-.+.+.   +..+++-..-|+||.=+|.-.+  
T Consensus       377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPr-sEyVvSGSDCGhIFiW~K~t~ei---i~~MegDr~VVNCLEpHP~~PvLA  452 (559)
T KOG1334|consen  377 SPREQYVKRVYKGHRNSRTVKGVNFFGPR-SEYVVSGSDCGHIFIWDKKTGEI---IRFMEGDRHVVNCLEPHPHLPVLA  452 (559)
T ss_pred             cchhhccchhhcccccccccceeeeccCc-cceEEecCccceEEEEecchhHH---HHHhhcccceEeccCCCCCCchhh
Confidence                0 0112455543  35555543 43 46888998889999999888773   6666665668999999998775  


Q ss_pred             cCCCCceEEeeec
Q 020480          288 SHEDTCTCTHRHS  300 (325)
Q Consensus       288 ~~~~d~~~~~~~~  300 (325)
                      +.|-|..+++|.-
T Consensus       453 sSGid~DVKIWTP  465 (559)
T KOG1334|consen  453 SSGIDHDVKIWTP  465 (559)
T ss_pred             ccCCccceeeecC
Confidence            7788999999964

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.88  E-value=3.8e-07  Score=82.66  Aligned_cols=143  Identities=13%  Similarity=0.140  Sum_probs=92.9

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecC---CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVS---AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      ..+...+...+|+|+| +.|+.+...   ..|++|++..        +.   ...+..+...+..++|+|++..++++.+
T Consensus       186 ~~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~--------g~---~~~~~~~~~~~~~~~~spDg~~l~~~~~  253 (417)
T TIGR02800       186 TRSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLAT--------GQ---REKVASFPGMNGAPAFSPDGSKLAVSLS  253 (417)
T ss_pred             ecCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCC--------CC---EEEeecCCCCccceEECCCCCEEEEEEC
Confidence            3466678889999999 566655433   4799999876        22   2233345556677999999985555666


Q ss_pred             CCC--cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC--cEEEEEccCCCCCCCeeEeeccCC
Q 020480          199 DDA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQS  274 (325)
Q Consensus       199 ~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~  274 (325)
                      .++  .|++||+.++.       ...+..+.......+|+|++..++++...++  .|.++|+.+++    ...+..+..
T Consensus       254 ~~~~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~  322 (417)
T TIGR02800       254 KDGNPDIYVMDLDGKQ-------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGG  322 (417)
T ss_pred             CCCCccEEEEECCCCC-------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCC
Confidence            555  48888887652       2233334444456789998854444444444  46677776654    344444556


Q ss_pred             CeeEEEeCCCCCc
Q 020480          275 EVGVSILNASFRL  287 (325)
Q Consensus       275 ~v~~i~~~p~~~~  287 (325)
                      .+..+.|+|+|..
T Consensus       323 ~~~~~~~spdg~~  335 (417)
T TIGR02800       323 YNASPSWSPDGDL  335 (417)
T ss_pred             CccCeEECCCCCE
Confidence            6778899999984

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.86  E-value=1.1e-08  Score=100.76  Aligned_cols=159  Identities=18%  Similarity=0.288  Sum_probs=121.1

Q ss_pred             EEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEE
Q 020480          117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (325)
Q Consensus       117 ~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  196 (325)
                      -..+..+. ..|+.+.|+.+| +.+..+..||.+.+|....           ++....+.|....+++.|-.  . .+++
T Consensus      2244 ~~~rt~g~-s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~p-----------k~~~s~qchnk~~~Df~Fi~--s-~~~t 2307 (2439)
T KOG1064|consen 2244 VCFRTAGN-SRVTRSRFNHQG-NKFGIVDGDGDLSLWQASP-----------KPYTSWQCHNKALSDFRFIG--S-LLAT 2307 (2439)
T ss_pred             EEeeccCc-chhhhhhhcccC-CceeeeccCCceeecccCC-----------cceeccccCCccccceeeee--h-hhhc
Confidence            33333444 889999999999 6888889999999999875           66777888999999999875  3 6777


Q ss_pred             Ee---CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC
Q 020480          197 GS---DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ  273 (325)
Q Consensus       197 ~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~  273 (325)
                      ++   .++.+.+||.......   ..++  .+|.+.++++++.|.. .+|++||.+|.|++||+|..+.   .+.++.  
T Consensus      2308 ag~s~d~~n~~lwDtl~~~~~---s~v~--~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql---~h~~~~-- 2376 (2439)
T KOG1064|consen 2308 AGRSSDNRNVCLWDTLLPPMN---SLVH--TCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQL---RHTFQA-- 2376 (2439)
T ss_pred             cccCCCCCcccchhcccCccc---ceee--eecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHH---HHHhhh--
Confidence            64   4688999998765432   2344  7899999999999986 6999999999999999998773   555443  


Q ss_pred             CCeeEEEeCCCCC-ccCCCCceEEeeeccee--eeccCe
Q 020480          274 SEVGVSILNASFR-LSHEDTCTCTHRHSRYL--LYKFPF  309 (325)
Q Consensus       274 ~~v~~i~~~p~~~-~~~~~d~~~~~~~~~~~--~~~~~~  309 (325)
                             ++.... ++++..|.+++|.+..+  ++.+|.
T Consensus      2377 -------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2377 -------LDTREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             -------hhhhheeeccCcccceEEEEccccchhhcCch
Confidence                   332222 37888999999987664  344443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.84  E-value=7.9e-07  Score=80.48  Aligned_cols=149  Identities=11%  Similarity=0.091  Sum_probs=83.7

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCC--eE--EEEeCCCCCCCCCCCCC-CCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSA--EV--YVFDYSKHPSKPPLDGA-CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg--~v--~vwd~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      ..+.....+|+|+|..++++...+|  .+  .+|++..        +. ..+.....++.......+|+|+|..++++..
T Consensus       229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~--------g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~  300 (428)
T PRK01029        229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET--------GAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSN  300 (428)
T ss_pred             CCCCccceEECCCCCEEEEEECCCCCcceeEEEeeccc--------CCCCcceEeecCCCCCcCCeEECCCCCEEEEEEC
Confidence            3445566899999954444443333  33  3356543        11 1122222222234467899999994444444


Q ss_pred             CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC--CcEEEEEccCCCCCCCeeEeeccCCCe
Q 020480          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD--QYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (325)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v  276 (325)
                      .+|...+|.+......   .....+..+...+...+|+|+|..++.++..+  ..|.+||+.+++    ...+......+
T Consensus       301 ~~g~~~ly~~~~~~~g---~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~----~~~Lt~~~~~~  373 (428)
T PRK01029        301 KDGRPRIYIMQIDPEG---QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR----DYQLTTSPENK  373 (428)
T ss_pred             CCCCceEEEEECcccc---cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC----eEEccCCCCCc
Confidence            6776566644321100   11223334445667889999985444344333  368999998876    33443333456


Q ss_pred             eEEEeCCCCCc
Q 020480          277 GVSILNASFRL  287 (325)
Q Consensus       277 ~~i~~~p~~~~  287 (325)
                      ....|+|+|+.
T Consensus       374 ~~p~wSpDG~~  384 (428)
T PRK01029        374 ESPSWAIDSLH  384 (428)
T ss_pred             cceEECCCCCE
Confidence            78999999983

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.82  E-value=2.8e-08  Score=82.70  Aligned_cols=146  Identities=18%  Similarity=0.272  Sum_probs=104.3

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      ..+.|.++.|...+ +++..|+.+|.|...|++....     +...+...+ -|.+.|+++..-......|++.+.+|.|
T Consensus       251 sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnq-----G~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gki  323 (425)
T KOG2695|consen  251 SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQ-----GNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKI  323 (425)
T ss_pred             cchhHHHHHhcccC-CeeEecccCCcEEEEEeeeccc-----CCCcceEEE-EcCcchhhhhhhccccceEeeccCcCce
Confidence            45778889998877 6999999999999999987311     223333333 5889999998776333389999999999


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEe--ecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee----ccCCCee
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAW--HLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV----AHQSEVG  277 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~--~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~h~~~v~  277 (325)
                      ++||+|..+..   ..+.++.+|.+.-.-+-+  ++.. ..++++++|...|||.++.+..   +.++.    +....+.
T Consensus       324 kLyD~R~~K~~---~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~ghL---l~tipf~~s~~e~d~~  396 (425)
T KOG2695|consen  324 KLYDLRATKCK---KSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGHL---LCTIPFPYSASEVDIP  396 (425)
T ss_pred             eEeeehhhhcc---cceeeeeccccccccccccccccc-ceEEEccCeeEEEEEecccCce---eeccCCCCcccccccc
Confidence            99999976432   237788888654333333  3433 5788899999999999998873   44442    1223567


Q ss_pred             EEEeCC
Q 020480          278 VSILNA  283 (325)
Q Consensus       278 ~i~~~p  283 (325)
                      +++|..
T Consensus       397 sv~~~s  402 (425)
T KOG2695|consen  397 SVAFDS  402 (425)
T ss_pred             ceehhc
Confidence            777764

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.81  E-value=1.4e-07  Score=87.18  Aligned_cols=155  Identities=15%  Similarity=0.128  Sum_probs=111.0

Q ss_pred             eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEe
Q 020480          128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD  207 (325)
Q Consensus       128 v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd  207 (325)
                      -..+.+++.+ .+.+. ..+..+.+|...... ..     ......-..|+-.+++.+++|.+. .+++|..||.|.+|.
T Consensus       163 ~~~I~~~~~g-e~~~i-~~~~~~~~~~v~~~~-~~-----~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~  233 (792)
T KOG1963|consen  163 PKSIVDNNSG-EFKGI-VHMCKIHIYFVPKHT-KH-----TSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWR  233 (792)
T ss_pred             CccEEEcCCc-eEEEE-EEeeeEEEEEecccc-ee-----eccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEe
Confidence            3567888877 34444 445578888887611 00     000111235777789999999999 899999999999996


Q ss_pred             CCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc
Q 020480          208 INAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL  287 (325)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~  287 (325)
                      --......  ...+.+.-|...|.+++|+++| .+|.|||..|.+.+|.+.+++.    +-+..-.++|..+.++|++.+
T Consensus       234 d~~~~~~~--~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k----qfLPRLgs~I~~i~vS~ds~~  306 (792)
T KOG1963|consen  234 DFGSSDDS--ETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK----QFLPRLGSPILHIVVSPDSDL  306 (792)
T ss_pred             cccccccc--ccceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc----ccccccCCeeEEEEEcCCCCe
Confidence            44311110  2355677799999999999998 5888999999999999999883    445667889999999999985


Q ss_pred             --cCCCCceEEee
Q 020480          288 --SHEDTCTCTHR  298 (325)
Q Consensus       288 --~~~~d~~~~~~  298 (325)
                        ..-.|..+.+-
T Consensus       307 ~sl~~~DNqI~li  319 (792)
T KOG1963|consen  307 YSLVLEDNQIHLI  319 (792)
T ss_pred             EEEEecCceEEEE
Confidence              33445555553

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.81  E-value=9.1e-07  Score=80.17  Aligned_cols=140  Identities=15%  Similarity=0.195  Sum_probs=87.6

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE-eC
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG-SD  199 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~-s~  199 (325)
                      .+.+.+.+++|+|++..++++.+.++  .|++|++..        +   ....+..+........|+|++. .|+.+ ..
T Consensus       231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~--------~---~~~~l~~~~~~~~~~~~s~dg~-~l~~~s~~  298 (417)
T TIGR02800       231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG--------K---QLTRLTNGPGIDTEPSWSPDGK-SIAFTSDR  298 (417)
T ss_pred             cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC--------C---CEEECCCCCCCCCCEEECCCCC-EEEEEECC
Confidence            35566778899999955555555554  588888875        2   1233344444455778999998 55544 44


Q ss_pred             CC--cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC---cEEEEEccCCCCCCCeeEeeccCC
Q 020480          200 DA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ---YLLIWDLRTPSVSKPVQSVVAHQS  274 (325)
Q Consensus       200 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~  274 (325)
                      ++  .|.++|+..+.       ...+..+...+....|+|++ ..++.++.++   .|.+||+.++.    ...+... .
T Consensus       299 ~g~~~iy~~d~~~~~-------~~~l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~----~~~l~~~-~  365 (417)
T TIGR02800       299 GGSPQIYMMDADGGE-------VRRLTFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGG----ERVLTDT-G  365 (417)
T ss_pred             CCCceEEEEECCCCC-------EEEeecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCC----eEEccCC-C
Confidence            44  47777776542       22333344566788999998 4666666555   78888887754    3333222 2


Q ss_pred             CeeEEEeCCCCCc
Q 020480          275 EVGVSILNASFRL  287 (325)
Q Consensus       275 ~v~~i~~~p~~~~  287 (325)
                      ......|+|+|+.
T Consensus       366 ~~~~p~~spdg~~  378 (417)
T TIGR02800       366 LDESPSFAPNGRM  378 (417)
T ss_pred             CCCCceECCCCCE
Confidence            3445689999873

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.81  E-value=8.1e-07  Score=79.49  Aligned_cols=191  Identities=17%  Similarity=0.254  Sum_probs=120.7

Q ss_pred             CCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEE----ecCCeE----EEEeCCCCCCCCCCCCCCCCcE-EEecCCC
Q 020480          109 FGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATK----TVSAEV----YVFDYSKHPSKPPLDGACSPDL-RLRGHST  179 (325)
Q Consensus       109 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g----~~dg~v----~vwd~~~~~~~~~~~~~~~~~~-~~~~h~~  179 (325)
                      +....++++....+.......++.|+...++.+.+-    +.+|.+    .+|++..        .+.+.+. +-....+
T Consensus       189 ~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r--------~klqrvsvtsipL~s  260 (545)
T PF11768_consen  189 LSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSR--------NKLQRVSVTSIPLPS  260 (545)
T ss_pred             EEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeec--------CceeEEEEEEEecCC
Confidence            333455777777777777778889997655555543    334433    3566654        2122221 1225778


Q ss_pred             ceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480          180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (325)
Q Consensus       180 ~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~  259 (325)
                      .+.+.+++|+.. .++.|+.||+|.+||...+        +..+....-..+.++|||+| .++++|+..|.+.+||+.-
T Consensus       261 ~v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~--------~t~~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  261 QVICCARSPSED-KLVLGCEDGSIILYDTTRG--------VTLLAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             cceEEecCcccc-eEEEEecCCeEEEEEcCCC--------eeeeeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeec
Confidence            999999999998 8999999999999999765        22333345567889999997 6999999999999999864


Q ss_pred             CCC--------CCC--eeEe---eccCCCeeEEEeCCCCCccCCCCceEE-eeecceeeeccCeeEEEeecC
Q 020480          260 PSV--------SKP--VQSV---VAHQSEVGVSILNASFRLSHEDTCTCT-HRHSRYLLYKFPFFVLVFPLF  317 (325)
Q Consensus       260 ~~~--------~~~--~~~~---~~h~~~v~~i~~~p~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~  317 (325)
                      ...        ..|  +..+   ..+...+..+.|++...++........ .-.+-....+-|...+.|.+.
T Consensus       331 spi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~~~~~~~~~~~~~~L~l~f~~GPl~vl~~~~G  402 (545)
T PF11768_consen  331 SPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQLSSQGEFYADTYDLLLLVFERGPLAVLRFKLG  402 (545)
T ss_pred             CccceeeccccCCCccEEeeehhccCcchhheeEeccCCCccccCCCcCCccceEEEEEcCCCeEEEEEeec
Confidence            321        011  1111   234556778888865544211111111 122334456677666666543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.79  E-value=1.5e-06  Score=79.14  Aligned_cols=140  Identities=15%  Similarity=0.122  Sum_probs=82.3

Q ss_pred             CCCeeEEEecCCCCcEEEEEecCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC-
Q 020480          125 DGEVNRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA-  201 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg-  201 (325)
                      .+.+....|+|+|..++++...+|  .|+++|+.+        +   ....+..+........|+|++..++++...+| 
T Consensus       242 ~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~--------~---~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~  310 (430)
T PRK00178        242 EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS--------R---QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGK  310 (430)
T ss_pred             CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC--------C---CeEEcccCCCCcCCeEECCCCCEEEEEECCCCC
Confidence            344557899999954444555555  688888876        2   22334445555667899999984445544444 


Q ss_pred             -cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC--cEEEEEccCCCCCCCeeEeeccCCCeeE
Q 020480          202 -QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSEVGV  278 (325)
Q Consensus       202 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~  278 (325)
                       .|.++|+..+..       ..+..........+|+|++..++++...++  .|.++|+.++.    ...+. +......
T Consensus       311 ~~iy~~d~~~g~~-------~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~----~~~lt-~~~~~~~  378 (430)
T PRK00178        311 PQIYKVNVNGGRA-------ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS----VRILT-DTSLDES  378 (430)
T ss_pred             ceEEEEECCCCCE-------EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC----EEEcc-CCCCCCC
Confidence             466667765421       111111222345789999854444443344  47888988765    23322 1222235


Q ss_pred             EEeCCCCCc
Q 020480          279 SILNASFRL  287 (325)
Q Consensus       279 i~~~p~~~~  287 (325)
                      ..|+|+|+.
T Consensus       379 p~~spdg~~  387 (430)
T PRK00178        379 PSVAPNGTM  387 (430)
T ss_pred             ceECCCCCE
Confidence            689999984

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.74  E-value=2.4e-06  Score=77.96  Aligned_cols=139  Identities=12%  Similarity=0.097  Sum_probs=80.3

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCe--EEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc-
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAE--VYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ-  202 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~-  202 (325)
                      +......|+|+|..++++.+.+|.  |+++|+..        +   ....+..+........|+|++..+++++..++. 
T Consensus       262 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t--------g---~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~  330 (448)
T PRK04792        262 GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT--------K---ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKP  330 (448)
T ss_pred             CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC--------C---CeEECccCCCCccceEECCCCCEEEEEECCCCCc
Confidence            344578999999655556666775  67777765        2   133344455556788999999854455544554 


Q ss_pred             -EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc--EEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480          203 -ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSEVGVS  279 (325)
Q Consensus       203 -i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~i  279 (325)
                       |.++|+.++..       ..+..........+|+|++..++++...++.  |.++|+.++.    ...+... ......
T Consensus       331 ~Iy~~dl~~g~~-------~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~----~~~lt~~-~~d~~p  398 (448)
T PRK04792        331 QIYRVNLASGKV-------SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA----MQVLTST-RLDESP  398 (448)
T ss_pred             eEEEEECCCCCE-------EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC----eEEccCC-CCCCCc
Confidence             55556655421       1121122223456899998655555444554  4456766655    2332211 122245


Q ss_pred             EeCCCCCc
Q 020480          280 ILNASFRL  287 (325)
Q Consensus       280 ~~~p~~~~  287 (325)
                      .|+|+|+.
T Consensus       399 s~spdG~~  406 (448)
T PRK04792        399 SVAPNGTM  406 (448)
T ss_pred             eECCCCCE
Confidence            79999984

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.72  E-value=6.2e-08  Score=80.72  Aligned_cols=144  Identities=13%  Similarity=0.156  Sum_probs=102.3

Q ss_pred             EEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEe
Q 020480          143 TKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI  222 (325)
Q Consensus       143 ~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  222 (325)
                      +.+.+-.|-+-++.+           .....+. ..+-|.++.|...++ +++.|..+|.|...|+|....+.. .+.+.
T Consensus       229 s~G~sqqv~L~nvet-----------g~~qsf~-sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~-~~a~r  294 (425)
T KOG2695|consen  229 SVGLSQQVLLTNVET-----------GHQQSFQ-SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNG-WCAQR  294 (425)
T ss_pred             cccccceeEEEEeec-----------ccccccc-cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCC-cceEE
Confidence            334455677777766           1122233 456788899988777 899999999999999998744322 23333


Q ss_pred             eecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeC--C-CCC-ccCCCCceEEee
Q 020480          223 FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN--A-SFR-LSHEDTCTCTHR  298 (325)
Q Consensus       223 ~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~--p-~~~-~~~~~d~~~~~~  298 (325)
                      +. |.+.|+++..-...+.+|++.+.+|+|++||+|..++.+.+..+.+|-..-.-+-++  + .|. +++|+|+..++|
T Consensus       295 ly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW  373 (425)
T KOG2695|consen  295 LY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW  373 (425)
T ss_pred             EE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence            33 788899887665334688899999999999999988767788888885433323332  2 232 389999999999


Q ss_pred             ecc
Q 020480          299 HSR  301 (325)
Q Consensus       299 ~~~  301 (325)
                      .++
T Consensus       374 sl~  376 (425)
T KOG2695|consen  374 SLD  376 (425)
T ss_pred             ecc
Confidence            876

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.70  E-value=7.3e-08  Score=55.61  Aligned_cols=38  Identities=21%  Similarity=0.558  Sum_probs=35.0

Q ss_pred             cceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEE
Q 020480          218 EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD  256 (325)
Q Consensus       218 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd  256 (325)
                      +++..+.+|...|++++|+|++ .+|++|+.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            3578899999999999999986 7999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.69  E-value=3.8e-07  Score=77.48  Aligned_cols=161  Identities=17%  Similarity=0.112  Sum_probs=107.4

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEE
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW  206 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iw  206 (325)
                      ....+..++.+ .++|++..+....++++...+.      ..+...... -...-+++.+..... ....+..-|-++-+
T Consensus        64 a~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~------~~kl~~~~~-v~~~~~ai~~~~~~~-sv~v~dkagD~~~~  134 (390)
T KOG3914|consen   64 APALVLTSDSG-RLVAVATSSKQRAVFDYRENPK------GAKLLDVSC-VPKRPTAISFIREDT-SVLVADKAGDVYSF  134 (390)
T ss_pred             cccccccCCCc-eEEEEEeCCCceEEEEEecCCC------cceeeeEee-cccCcceeeeeeccc-eEEEEeecCCceee
Confidence            44455677777 7999988888888888876221      011121111 122233444444444 34444444444444


Q ss_pred             eCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-eccCCCeeEEEeCCCC
Q 020480          207 DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSEVGVSILNASF  285 (325)
Q Consensus       207 d~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~i~~~p~~  285 (325)
                      |+-....    .+....-+|-+-+++|+|+|++ .+++++..|..||+-.......   +..+ -+|+.-|..++.-++.
T Consensus       135 di~s~~~----~~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~---IesfclGH~eFVS~isl~~~~  206 (390)
T KOG3914|consen  135 DILSADS----GRCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFV---IESFCLGHKEFVSTISLTDNY  206 (390)
T ss_pred             eeecccc----cCcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccc---hhhhccccHhheeeeeeccCc
Confidence            4433221    1344567899999999999997 6889999999999988776553   5554 6799999999999988


Q ss_pred             C-ccCCCCceEEeeecceee
Q 020480          286 R-LSHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       286 ~-~~~~~d~~~~~~~~~~~~  304 (325)
                      . +++|+|+++++|+++...
T Consensus       207 ~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  207 LLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             eeeecCCCCcEEEEecccCC
Confidence            7 599999999999986643

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.68  E-value=2e-06  Score=69.64  Aligned_cols=128  Identities=13%  Similarity=0.042  Sum_probs=91.8

Q ss_pred             EEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC--ceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcc
Q 020480          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST--EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL  217 (325)
Q Consensus       140 ~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  217 (325)
                      .+..++.|.++++.++..        +..+..    .|..  .+.+++.++++. ++++.+....|..|.+.....    
T Consensus       130 ~~~i~sndht~k~~~~~~--------~s~~~~----~h~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~se----  192 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSG--------DSNKFA----VHNQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESE----  192 (344)
T ss_pred             ceeeccCCcceeEEEEec--------Ccccce----eeccccceeeeEEcCCCc-eEEEecCCCcceEEEeCCccc----
Confidence            466668888899888875        222211    2332  277899999998 899999999999998876532    


Q ss_pred             cceE-eeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe----eccCCCeeEEEeCCCCCc
Q 020480          218 EAMQ-IFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV----VAHQSEVGVSILNASFRL  287 (325)
Q Consensus       218 ~~~~-~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~i~~~p~~~~  287 (325)
                      .... .....+..-.+.+|+..+ ..+|++..||++.|||+|....  |....    ..|.+.+..+.|++.|.+
T Consensus       193 y~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~t--pm~~~sstrp~hnGa~R~c~Fsl~g~l  264 (344)
T KOG4532|consen  193 YIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMAT--PMAEISSTRPHHNGAFRVCRFSLYGLL  264 (344)
T ss_pred             eeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEEEeccccc--chhhhcccCCCCCCceEEEEecCCCcc
Confidence            1222 222334455678898875 6999999999999999998764  33322    458899999999997763

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.67  E-value=1.8e-06  Score=78.76  Aligned_cols=142  Identities=14%  Similarity=0.112  Sum_probs=86.0

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEe-cCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          123 NHDGEVNRARYMPQNPFLIATKT-VSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~-~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      .+...+....|+|+|. .|+..+ .++  .|+++|+..        +....   +....+......|+|++..++++.+.
T Consensus       215 ~~~~~~~~p~wSPDG~-~La~~s~~~g~~~L~~~dl~t--------g~~~~---lt~~~g~~~~~~wSPDG~~La~~~~~  282 (448)
T PRK04792        215 RSPEPLMSPAWSPDGR-KLAYVSFENRKAEIFVQDIYT--------QVREK---VTSFPGINGAPRFSPDGKKLALVLSK  282 (448)
T ss_pred             cCCCcccCceECCCCC-EEEEEEecCCCcEEEEEECCC--------CCeEE---ecCCCCCcCCeeECCCCCEEEEEEeC
Confidence            3455677899999994 555443 333  588888876        22222   22222334478999999955556677


Q ss_pred             CCc--EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc--EEEEEccCCCCCCCeeEeeccCCC
Q 020480          200 DAQ--ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSE  275 (325)
Q Consensus       200 dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~  275 (325)
                      +|.  |.++|+.++.       ...+..+.......+|+|++..++++...++.  |.++|+.+++    ...+......
T Consensus       283 ~g~~~Iy~~dl~tg~-------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~----~~~Lt~~g~~  351 (448)
T PRK04792        283 DGQPEIYVVDIATKA-------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK----VSRLTFEGEQ  351 (448)
T ss_pred             CCCeEEEEEECCCCC-------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEEecCCCC
Confidence            775  7777877542       23334444556778999998655555555555  5555665554    3333222223


Q ss_pred             eeEEEeCCCCCc
Q 020480          276 VGVSILNASFRL  287 (325)
Q Consensus       276 v~~i~~~p~~~~  287 (325)
                      ....+|+|+|+.
T Consensus       352 ~~~~~~SpDG~~  363 (448)
T PRK04792        352 NLGGSITPDGRS  363 (448)
T ss_pred             CcCeeECCCCCE
Confidence            345789999984

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.66  E-value=1.4e-07  Score=78.18  Aligned_cols=135  Identities=10%  Similarity=0.107  Sum_probs=100.9

Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCC
Q 020480          130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDIN  209 (325)
Q Consensus       130 ~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~  209 (325)
                      -.+|+|+| +++|+++.- .+.|-|..+          .+....+. --+.|..+.|..+....+.....++.|.+|++.
T Consensus        13 ~c~fSp~g-~yiAs~~~y-rlviRd~~t----------lq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~   79 (447)
T KOG4497|consen   13 FCSFSPCG-NYIASLSRY-RLVIRDSET----------LQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLV   79 (447)
T ss_pred             ceeECCCC-Ceeeeeeee-EEEEeccch----------hhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEee
Confidence            35899998 799998765 777777765          22111111 135678899999888677778899999999998


Q ss_pred             CCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc
Q 020480          210 AAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL  287 (325)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~  287 (325)
                      ...      -...+.....++.+++|+|+|..++.+..-+-.|.+|.+.+.+.    ..++.-+..+..++|+|+|++
T Consensus        80 Qpe------w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~----~~~~~pK~~~kg~~f~~dg~f  147 (447)
T KOG4497|consen   80 QPE------WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG----YLLPHPKTNVKGYAFHPDGQF  147 (447)
T ss_pred             cce------eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee----EEecccccCceeEEECCCCce
Confidence            763      23345566778999999999988888989999999999998873    333333455688999999985

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.66  E-value=7.6e-08  Score=77.28  Aligned_cols=165  Identities=15%  Similarity=0.160  Sum_probs=102.2

Q ss_pred             ceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCe
Q 020480          115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGH  193 (325)
Q Consensus       115 ~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~  193 (325)
                      ++....  .|+++-.+-..+-.+ +.++++..||.+.+++.+....         ...... .|. .-.+.+....++ .
T Consensus        81 ~~~~~a--~~sep~p~~~~s~~~-t~V~~~~~dg~~~v~s~~~~~~---------~~~~i~~~~~-~~as~~~~~~~~-~  146 (319)
T KOG4714|consen   81 PFKVLA--KNSEIDPNDACTMTD-NRVCIGYADGSLAVFSTDKDLA---------LMSRIPSIHS-GSASRKICRHGN-S  146 (319)
T ss_pred             ceeeee--ccCCCCCcccccccC-CceEecCCCceEEEEechHHHh---------hhhhcccccc-cccccceeeccc-E
Confidence            444444  344333333333334 5799999999999999875110         011111 111 112223333333 2


Q ss_pred             EEEEe-----CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeE
Q 020480          194 LLSGS-----DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS  268 (325)
Q Consensus       194 l~s~s-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  268 (325)
                      +.++.     .-+..+.|+++..+.     .+..... -..|.+++-+|..++++++|+.||.+-+||.|....  |+..
T Consensus       147 i~s~~~g~~n~~d~~~a~~~~p~~t-----~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--p~S~  218 (319)
T KOG4714|consen  147 ILSGGCGNWNAQDNFYANTLDPIKT-----LIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--PVSL  218 (319)
T ss_pred             EecCCcceEeeccceeeeccccccc-----ccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccc--hHHH
Confidence            33321     123345565554321     1111111 223899999998888999999999999999999864  6778


Q ss_pred             eeccCCCeeEEEeCCCCC---ccCCCCceEEeeecc
Q 020480          269 VVAHQSEVGVSILNASFR---LSHEDTCTCTHRHSR  301 (325)
Q Consensus       269 ~~~h~~~v~~i~~~p~~~---~~~~~d~~~~~~~~~  301 (325)
                      +.+|+.+++-|.|+|...   ++++.||.+-.|+-.
T Consensus       219 l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  219 LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             HHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence            899999999999998543   599999999999865

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.65  E-value=6.5e-08  Score=55.83  Aligned_cols=37  Identities=38%  Similarity=0.597  Sum_probs=34.5

Q ss_pred             CcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEe
Q 020480          170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD  207 (325)
Q Consensus       170 ~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd  207 (325)
                      ++.++.+|.+.|.+++|+|++. +|++|+.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence            3678899999999999999988 999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.64  E-value=2.1e-07  Score=92.25  Aligned_cols=156  Identities=15%  Similarity=0.240  Sum_probs=124.0

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      +-..|.++.-+|.. .+.++|+.||.|++|....          ...+..++ ...+.|+.+.|+.+|+ .+..+..||.
T Consensus      2207 ~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~----------~~~v~~~rt~g~s~vtr~~f~~qGn-k~~i~d~dg~ 2274 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGH----------GQQVVCFRTAGNSRVTRSRFNHQGN-KFGIVDGDGD 2274 (2439)
T ss_pred             ccCceeeecCCCCC-ceEEecCCCceEEEEeccC----------CCeEEEeeccCcchhhhhhhcccCC-ceeeeccCCc
Confidence            44667778888877 4889999999999999876          22233332 2338899999999998 8999999999


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe---cCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG---DDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS  279 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i  279 (325)
                      +.+|.+..       .+....+.|.....++.|-.   .++++++   .++.+.+||..-......+.  ..|.+.++++
T Consensus      2275 l~l~q~~p-------k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2275 LSLWQASP-------KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVL 2342 (2439)
T ss_pred             eeecccCC-------cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEE
Confidence            99999873       46778899999999999874   4677765   67889999987544322344  7899999999


Q ss_pred             EeCCCCCc--cCCCCceEEeeeccee
Q 020480          280 ILNASFRL--SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       280 ~~~p~~~~--~~~~d~~~~~~~~~~~  303 (325)
                      ++.|...+  +||.+|-+++||++..
T Consensus      2343 ~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2343 AYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred             EEcCcceEEEecCCcCcEEEeehHHH
Confidence            99998774  9999999999998764

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.63  E-value=5e-07  Score=76.78  Aligned_cols=126  Identities=13%  Similarity=0.175  Sum_probs=87.1

Q ss_pred             eEEEEEeccCCCeeEEEecCCCCcEEEE---EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCC
Q 020480          116 VQIIQQINHDGEVNRARYMPQNPFLIAT---KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG  192 (325)
Q Consensus       116 ~~~~~~~~h~~~v~~v~~~~~~~~~la~---g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~  192 (325)
                      .++.........-+++.|..... .+..   ++....+.+|....        +.   ..-+.||-+-+++++|+|+.. 
T Consensus        98 ~kl~~~~~v~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~~~--------~~---~~~~lGhvSml~dVavS~D~~-  164 (390)
T KOG3914|consen   98 AKLLDVSCVPKRPTAISFIREDT-SVLVADKAGDVYSFDILSADS--------GR---CEPILGHVSMLLDVAVSPDDQ-  164 (390)
T ss_pred             ceeeeEeecccCcceeeeeeccc-eEEEEeecCCceeeeeecccc--------cC---cchhhhhhhhhheeeecCCCC-
Confidence            33444444444445555555442 2333   33344455555443        12   223458999999999999998 


Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceEe-eecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC
Q 020480          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQI-FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV  262 (325)
Q Consensus       193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  262 (325)
                      +++++..|..|++-.....-      .+.. .-+|+.-|..++.-++  ..|++||.|++|++||++++++
T Consensus       165 ~IitaDRDEkIRvs~ypa~f------~IesfclGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  165 FIITADRDEKIRVSRYPATF------VIESFCLGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKL  227 (390)
T ss_pred             EEEEecCCceEEEEecCccc------chhhhccccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCc
Confidence            89999999999998766542      2333 3569999999998875  4688999999999999999986

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.62  E-value=2.9e-06  Score=77.25  Aligned_cols=143  Identities=13%  Similarity=0.147  Sum_probs=88.1

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEec-C--CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTV-S--AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~-d--g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      ..+...+....|+|+| +.|+..+. +  ..|.+|++..        +...   .+....+.+....|+|++..++++.+
T Consensus       195 ~~~~~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~--------g~~~---~l~~~~g~~~~~~~SpDG~~la~~~~  262 (430)
T PRK00178        195 LQSREPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDT--------GRRE---QITNFEGLNGAPAWSPDGSKLAFVLS  262 (430)
T ss_pred             ecCCCceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCC--------CCEE---EccCCCCCcCCeEECCCCCEEEEEEc
Confidence            3566778899999999 45554443 2  3688899876        2222   22223334557899999984445666


Q ss_pred             CCC--cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc--EEEEEccCCCCCCCeeEeeccCC
Q 020480          199 DDA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQS  274 (325)
Q Consensus       199 ~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~  274 (325)
                      .+|  .|.+||+.++.       ...+..+........|+|++..++.+...+|.  |+++|+.+++    ...+.....
T Consensus       263 ~~g~~~Iy~~d~~~~~-------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~----~~~lt~~~~  331 (430)
T PRK00178        263 KDGNPEIYVMDLASRQ-------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR----AERVTFVGN  331 (430)
T ss_pred             cCCCceEEEEECCCCC-------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCC
Confidence            665  58888988653       22334444556678899998655555544554  6666666655    222221222


Q ss_pred             CeeEEEeCCCCCc
Q 020480          275 EVGVSILNASFRL  287 (325)
Q Consensus       275 ~v~~i~~~p~~~~  287 (325)
                      ......|+|+|..
T Consensus       332 ~~~~~~~Spdg~~  344 (430)
T PRK00178        332 YNARPRLSADGKT  344 (430)
T ss_pred             CccceEECCCCCE
Confidence            3345789999884

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.62  E-value=2.1e-06  Score=71.78  Aligned_cols=164  Identities=10%  Similarity=0.084  Sum_probs=112.2

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-----CCceEEEEecCCCCCeEEEE
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-----STEGYGLSWSKFKEGHLLSG  197 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~p~~~~~l~s~  197 (325)
                      .|+-.|+++.++.+.. .+++ ..|=.|.+|++.-..       ..-.+..++.+     +.-|++..|+|...++|+-.
T Consensus       162 aHtyhiNSIS~NsD~E-t~lS-ADdLRINLWnlei~d-------~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YS  232 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKE-TFLS-ADDLRINLWNLEIID-------QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYS  232 (433)
T ss_pred             cceeEeeeeeecCccc-eEee-ccceeeeeccccccC-------CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEe
Confidence            5889999999999884 5555 467899999987521       11112223333     34588999999988899999


Q ss_pred             eCCCcEEEEeCCCCCCCCc----------ccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCee
Q 020480          198 SDDAQICLWDINAAPKNKS----------LEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ  267 (325)
Q Consensus       198 s~dg~i~iwd~~~~~~~~~----------~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  267 (325)
                      +..|+|++.|+|.....-.          .....-|..--..|.++.|+++| +++++-. =-+|++||+.....  |+.
T Consensus       233 SSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRD-yltvk~wD~nme~~--pv~  308 (433)
T KOG1354|consen  233 SSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRD-YLTVKLWDLNMEAK--PVE  308 (433)
T ss_pred             cCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEec-cceeEEEeccccCC--cce
Confidence            9999999999995421100          00011122223578899999987 6776544 36899999976654  677


Q ss_pred             EeeccC------------CCe---eEEEeCCCCC--ccCCCCceEEeee
Q 020480          268 SVVAHQ------------SEV---GVSILNASFR--LSHEDTCTCTHRH  299 (325)
Q Consensus       268 ~~~~h~------------~~v---~~i~~~p~~~--~~~~~d~~~~~~~  299 (325)
                      ++.-|.            ..|   ..++|+-++.  ++|++....++++
T Consensus       309 t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  309 TYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             EEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence            776663            222   3477887765  4888888888876

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.62  E-value=1.8e-06  Score=72.19  Aligned_cols=170  Identities=15%  Similarity=0.153  Sum_probs=129.0

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      .+.+++++.+.+.- ..|++|-..|++.-+.+...-      .+....+....|...+..+-|+.... ++++.+.|..+
T Consensus        67 mP~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedf------nkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~  138 (404)
T KOG1409|consen   67 MPSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDF------NKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQF  138 (404)
T ss_pred             CCCCceEeeeeccc-eEEEEEEecceEEEEEhhhhh------hhcchhhhhhhhhcceeeEEecCCce-eEEEeccccce
Confidence            46889999999977 789999999999999887521      22344556678888999998887766 78887777665


Q ss_pred             EEEeCCCCCCC-----------------------------------CcccceEeeecCCccEEEEEeecCCCcEEEEEec
Q 020480          204 CLWDINAAPKN-----------------------------------KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD  248 (325)
Q Consensus       204 ~iwd~~~~~~~-----------------------------------~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~  248 (325)
                      .---.+.+...                                   ....++..+.+|.+.+.+++|.|.. .++.+|..
T Consensus       139 ~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~  217 (404)
T KOG1409|consen  139 AWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGAS  217 (404)
T ss_pred             EEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccc
Confidence            43322222110                                   1224577888999999999999975 78999999


Q ss_pred             CCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--ccCCCCceEEeeecceee
Q 020480          249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--LSHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       249 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~~~~~d~~~~~~~~~~~~  304 (325)
                      |..+-+||+-..+.  ....+.+|...|..+...+.-+  ++++.|+.+.+|+.....
T Consensus       218 d~~vi~wdigg~~g--~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  218 DHSVIMWDIGGRKG--TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             cCceEEEeccCCcc--eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence            99999999987664  4667788999999888877544  489999999999875543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.62  E-value=9.2e-08  Score=79.26  Aligned_cols=105  Identities=13%  Similarity=0.182  Sum_probs=78.7

Q ss_pred             CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  204 (325)
                      -..|.-+.|..+...++.....++.|.+|++..          ..-..++......+.+++|+|+|+..|.+...+-.|.
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q----------pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriT  117 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ----------PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRIT  117 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeec----------ceeEEEeccCCCcceeeeECCCcceEeeeecceeEEE
Confidence            345667788887767777888999999999986          2324566677788999999999987899999999999


Q ss_pred             EEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe
Q 020480          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG  247 (325)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~  247 (325)
                      +|.+.+...       ..+..-+..+..++|+|+|+ +.+-++
T Consensus       118 VWSL~t~~~-------~~~~~pK~~~kg~~f~~dg~-f~ai~s  152 (447)
T KOG4497|consen  118 VWSLNTQKG-------YLLPHPKTNVKGYAFHPDGQ-FCAILS  152 (447)
T ss_pred             EEEecccee-------EEecccccCceeEEECCCCc-eeeeee
Confidence            999987522       12222334567889999984 555544

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.60  E-value=4.2e-06  Score=67.81  Aligned_cols=148  Identities=13%  Similarity=0.043  Sum_probs=102.6

Q ss_pred             eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE-EEecCCCceEEEEecCCCCCeEEEEeCCCcEEEE
Q 020480          128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW  206 (325)
Q Consensus       128 v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iw  206 (325)
                      ++.+.+++++ .++++.+....|..|.+...        ....+. .....++.-.+..|+.... .+|+++.||++.||
T Consensus       161 ~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~--------sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~  230 (344)
T KOG4532|consen  161 QNSLHYSNDP-SWGSSVGDSRRVFRYAIDDE--------SEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIY  230 (344)
T ss_pred             eeeeEEcCCC-ceEEEecCCCcceEEEeCCc--------cceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEE
Confidence            8889999988 78999899999999998762        222222 3345566778999999888 89999999999999


Q ss_pred             eCCCCCCCCcccceEeeecCCccEEEEEeecCCC-cEEEEEecCCcEEEEEccCCCCCCCeeEe----eccC-CCeeEEE
Q 020480          207 DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE-YLFGSVGDDQYLLIWDLRTPSVSKPVQSV----VAHQ-SEVGVSI  280 (325)
Q Consensus       207 d~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~h~-~~v~~i~  280 (325)
                      |+|....... ....+-..|++.+..+.|+|.|. .+|.-.-.-+.+++-|+|+....+.+...    ..|. ..|..-.
T Consensus       231 DVR~~~tpm~-~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~  309 (344)
T KOG4532|consen  231 DVRNMATPMA-EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTN  309 (344)
T ss_pred             Eecccccchh-hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccc
Confidence            9997643211 11222345889999999998654 24444556678999999998752211111    1122 2366667


Q ss_pred             eCCCCC
Q 020480          281 LNASFR  286 (325)
Q Consensus       281 ~~p~~~  286 (325)
                      |+..+.
T Consensus       310 f~~~n~  315 (344)
T KOG4532|consen  310 FNNENE  315 (344)
T ss_pred             ccCCCc
Confidence            776554

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.60  E-value=1.2e-05  Score=72.84  Aligned_cols=141  Identities=16%  Similarity=0.187  Sum_probs=84.5

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC-C--Cc
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-D--AQ  202 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-d--g~  202 (325)
                      +.....+|+|+|..++.+...+|...+|.+...       ........+..+...+....|+|++. .|+..+. +  ..
T Consensus       281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~-------~~g~~~~~lt~~~~~~~~p~wSPDG~-~Laf~~~~~g~~~  352 (428)
T PRK01029        281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID-------PEGQSPRLLTKKYRNSSCPAWSPDGK-KIAFCSVIKGVRQ  352 (428)
T ss_pred             CCcCCeEECCCCCEEEEEECCCCCceEEEEECc-------ccccceEEeccCCCCccceeECCCCC-EEEEEEcCCCCcE
Confidence            344678999999544444445675555543210       00111233444455677899999998 5655443 3  36


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec--CCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD--DQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      |.+||+.++..       ..+......+....|+|++..+++++..  ...|.++|+..++    ...+....+.+...+
T Consensus       353 I~v~dl~~g~~-------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~----~~~Lt~~~g~~~~p~  421 (428)
T PRK01029        353 ICVYDLATGRD-------YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK----TRKIVIGSGEKRFPS  421 (428)
T ss_pred             EEEEECCCCCe-------EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCCcccCce
Confidence            89999987632       2223223356778999998655545543  3568888887765    333333445567788


Q ss_pred             eCCCC
Q 020480          281 LNASF  285 (325)
Q Consensus       281 ~~p~~  285 (325)
                      |+|..
T Consensus       422 Ws~~~  426 (428)
T PRK01029        422 WGAFP  426 (428)
T ss_pred             ecCCC
Confidence            88754

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.60  E-value=6.4e-06  Score=79.38  Aligned_cols=151  Identities=14%  Similarity=0.150  Sum_probs=102.6

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-CCceEEE-EecCCCCC-eEEEEeCC
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-STEGYGL-SWSKFKEG-HLLSGSDD  200 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l-~~~p~~~~-~l~s~s~d  200 (325)
                      -.+.+.++..++.+ +.+|+|+.||.|++.++.......   -.....+....+ .+.+.++ ++...... .++.+..-
T Consensus      1097 ~~sr~~~vt~~~~~-~~~Av~t~DG~v~~~~id~~~~~~---~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~ 1172 (1431)
T KOG1240|consen 1097 EGSRVEKVTMCGNG-DQFAVSTKDGSVRVLRIDHYNVSK---RVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDL 1172 (1431)
T ss_pred             cCCceEEEEeccCC-CeEEEEcCCCeEEEEEcccccccc---ceeeeeecccccCCCceEEeecccccccceeEEEEEec
Confidence            66789999999988 799999999999999987521100   000001111111 1223333 34333332 78888889


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-eccCCCeeEE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSEVGVS  279 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~i  279 (325)
                      +.|..||+++....+.+    ......+.|++++.+|.+ +.++.|+..|.+-+||+|-+.   ++.+. .++..++..+
T Consensus      1173 ~~iv~~D~r~~~~~w~l----k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~---~i~sw~~P~~~~i~~v 1244 (1431)
T KOG1240|consen 1173 SRIVSWDTRMRHDAWRL----KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRV---PILSWEHPARAPIRHV 1244 (1431)
T ss_pred             cceEEecchhhhhHHhh----hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCc---eeecccCcccCCcceE
Confidence            99999999987543322    123345679999999976 699999999999999999877   45554 4456888888


Q ss_pred             EeCCCCC
Q 020480          280 ILNASFR  286 (325)
Q Consensus       280 ~~~p~~~  286 (325)
                      ..+|...
T Consensus      1245 ~~~~~~~ 1251 (1431)
T KOG1240|consen 1245 WLCPTYP 1251 (1431)
T ss_pred             EeeccCC
Confidence            8887544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.59  E-value=6.8e-07  Score=81.37  Aligned_cols=153  Identities=13%  Similarity=0.196  Sum_probs=108.0

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCC-----CCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDG-----ACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~-----~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  197 (325)
                      +......|+.|+... .++|+|+.||.++|..+.+........+     ....-.++.||...|.-+.|+.+.+ .|.|+
T Consensus        12 PnnvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtS   89 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTS   89 (1189)
T ss_pred             CCCceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-ccccc
Confidence            455677899999876 6999999999999998876433222111     1222356789999999999999888 89999


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG  277 (325)
Q Consensus       198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  277 (325)
                      ..+|.|.||-+-.+.-...    ..-...++.|.+++|+.+| ..++..-.||.|-+=.+...+    +.--.-......
T Consensus        90 Dt~GlIiVWmlykgsW~EE----MiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNR----IwgKeLkg~~l~  160 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSWCEE----MINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNR----IWGKELKGQLLA  160 (1189)
T ss_pred             CCCceEEEEeeecccHHHH----HhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccce----ecchhcchhecc
Confidence            9999999999877632110    1123356778999999988 577788888888777666554    222111122344


Q ss_pred             EEEeCCCCC
Q 020480          278 VSILNASFR  286 (325)
Q Consensus       278 ~i~~~p~~~  286 (325)
                      .+.|+++.+
T Consensus       161 hv~ws~D~~  169 (1189)
T KOG2041|consen  161 HVLWSEDLE  169 (1189)
T ss_pred             ceeecccHH
Confidence            677888766

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.57  E-value=9.3e-06  Score=72.87  Aligned_cols=80  Identities=13%  Similarity=0.178  Sum_probs=65.7

Q ss_pred             EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480          118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (325)
Q Consensus       118 ~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  197 (325)
                      .+..+..+..|.+++++|+. ..++.|+.||.|.+||...        +    +..+....-..+.++|+|+|. .+++|
T Consensus       252 svtsipL~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~--------~----~t~~~ka~~~P~~iaWHp~ga-i~~V~  317 (545)
T PF11768_consen  252 SVTSIPLPSQVICCARSPSE-DKLVLGCEDGSIILYDTTR--------G----VTLLAKAEFIPTLIAWHPDGA-IFVVG  317 (545)
T ss_pred             EEEEEecCCcceEEecCccc-ceEEEEecCCeEEEEEcCC--------C----eeeeeeecccceEEEEcCCCc-EEEEE
Confidence            34567799999999999988 7999999999999999876        1    222223345578999999999 99999


Q ss_pred             eCCCcEEEEeCCCC
Q 020480          198 SDDAQICLWDINAA  211 (325)
Q Consensus       198 s~dg~i~iwd~~~~  211 (325)
                      +..|.+.+||+.-.
T Consensus       318 s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  318 SEQGELQCFDMALS  331 (545)
T ss_pred             cCCceEEEEEeecC
Confidence            99999999998654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.57  E-value=2.8e-05  Score=65.72  Aligned_cols=201  Identities=11%  Similarity=0.125  Sum_probs=126.4

Q ss_pred             EEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEE
Q 020480           64 QKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIAT  143 (325)
Q Consensus        64 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~  143 (325)
                      +.+.+|+.+.. +..-|+++.+.-                        ..+.+...+.....+..+-++|+|+. +.|.+
T Consensus         3 ~~~YiGtyT~~-~s~gI~v~~ld~------------------------~~g~l~~~~~v~~~~nptyl~~~~~~-~~LY~   56 (346)
T COG2706           3 QTVYIGTYTKR-ESQGIYVFNLDT------------------------KTGELSLLQLVAELGNPTYLAVNPDQ-RHLYV   56 (346)
T ss_pred             eEEEEeeeccc-CCCceEEEEEeC------------------------cccccchhhhccccCCCceEEECCCC-CEEEE
Confidence            45677887632 234677777752                        24456666677888889999999988 45555


Q ss_pred             Eec---CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe-CCCcEEEEeCCCCCCCCcccc
Q 020480          144 KTV---SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-DDAQICLWDINAAPKNKSLEA  219 (325)
Q Consensus       144 g~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~  219 (325)
                      +..   .|.|-.|.+....      +....+.....-..+-+.++.+++++ +++++. ..|.|.++-++.....   ..
T Consensus        57 v~~~~~~ggvaay~iD~~~------G~Lt~ln~~~~~g~~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l---~~  126 (346)
T COG2706          57 VNEPGEEGGVAAYRIDPDD------GRLTFLNRQTLPGSPPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGSL---QP  126 (346)
T ss_pred             EEecCCcCcEEEEEEcCCC------CeEEEeeccccCCCCCeEEEECCCCC-EEEEEEccCceEEEEEcccCCcc---cc
Confidence            433   5778777776410      22222221112223448999999999 566655 5689999999764322   12


Q ss_pred             eEeeecCCcc----------EEEEEeecCCCcEEEEEe-cCCcEEEEEccCCCCCCCeeE-eeccCCCeeEEEeCCCCCc
Q 020480          220 MQIFKVHEGV----------VEDVAWHLRHEYLFGSVG-DDQYLLIWDLRTPSVSKPVQS-VVAHQSEVGVSILNASFRL  287 (325)
Q Consensus       220 ~~~~~~~~~~----------v~~v~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~i~~~p~~~~  287 (325)
                      ......|.+.          +....+.|++. +++++. .-..|.+|++..+... +... ...-...-+.|.|+|++++
T Consensus       127 ~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y~~~dg~L~-~~~~~~v~~G~GPRHi~FHpn~k~  204 (346)
T COG2706         127 VVQVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFLYDLDDGKLT-PADPAEVKPGAGPRHIVFHPNGKY  204 (346)
T ss_pred             ceeeeecCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEEEEcccCccc-cccccccCCCCCcceEEEcCCCcE
Confidence            2222234443          77888999984 555544 5567999999966531 1111 1233556788999999995


Q ss_pred             ---cCCCCceEEeeecce
Q 020480          288 ---SHEDTCTCTHRHSRY  302 (325)
Q Consensus       288 ---~~~~d~~~~~~~~~~  302 (325)
                         ..-.++++.+|....
T Consensus       205 aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         205 AYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             EEEEeccCCEEEEEEEcC
Confidence               566777888876544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.48  E-value=5.1e-05  Score=66.94  Aligned_cols=201  Identities=10%  Similarity=0.118  Sum_probs=125.4

Q ss_pred             EEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEe
Q 020480           66 MILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKT  145 (325)
Q Consensus        66 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~  145 (325)
                      +++|+.+. +....|++++++.                        ..+.+.......-......++++|++. +|.+..
T Consensus         2 ~~vgsy~~-~~~~gI~~~~~d~------------------------~~g~l~~~~~~~~~~~Ps~l~~~~~~~-~LY~~~   55 (345)
T PF10282_consen    2 LYVGSYTN-GKGGGIYVFRFDE------------------------ETGTLTLVQTVAEGENPSWLAVSPDGR-RLYVVN   55 (345)
T ss_dssp             EEEEECCS-SSSTEEEEEEEET------------------------TTTEEEEEEEEEESSSECCEEE-TTSS-EEEEEE
T ss_pred             EEEEcCCC-CCCCcEEEEEEcC------------------------CCCCceEeeeecCCCCCceEEEEeCCC-EEEEEE
Confidence            56777765 4556788888741                        245677766666667777889999884 555544


Q ss_pred             c----CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe-CCCcEEEEeCCCCCCCCcccce
Q 020480          146 V----SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-DDAQICLWDINAAPKNKSLEAM  220 (325)
Q Consensus       146 ~----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~  220 (325)
                      .    +|.|..|.+....      +....+............++.+|++. +|+++. .+|.|.++++.......  ...
T Consensus        56 e~~~~~g~v~~~~i~~~~------g~L~~~~~~~~~g~~p~~i~~~~~g~-~l~vany~~g~v~v~~l~~~g~l~--~~~  126 (345)
T PF10282_consen   56 EGSGDSGGVSSYRIDPDT------GTLTLLNSVPSGGSSPCHIAVDPDGR-FLYVANYGGGSVSVFPLDDDGSLG--EVV  126 (345)
T ss_dssp             TTSSTTTEEEEEEEETTT------TEEEEEEEEEESSSCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSEEE--EEE
T ss_pred             ccccCCCCEEEEEECCCc------ceeEEeeeeccCCCCcEEEEEecCCC-EEEEEEccCCeEEEEEccCCcccc--eee
Confidence            4    6799999887610      12233334443445567899999999 555554 68999999998742211  111


Q ss_pred             Eeee----------cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC-CCCeeEe-eccCCCeeEEEeCCCCCc-
Q 020480          221 QIFK----------VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-SKPVQSV-VAHQSEVGVSILNASFRL-  287 (325)
Q Consensus       221 ~~~~----------~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~-~~h~~~v~~i~~~p~~~~-  287 (325)
                      ..+.          .......++.++|++..++++.-....|++|++..... ..+...+ .......+.++|+|++++ 
T Consensus       127 ~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~  206 (345)
T PF10282_consen  127 QTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYA  206 (345)
T ss_dssp             EEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEE
T ss_pred             eecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEE
Confidence            1111          12345778999999866666666677899999987652 1111222 223456789999999984 


Q ss_pred             --cCCCCceEEeeecc
Q 020480          288 --SHEDTCTCTHRHSR  301 (325)
Q Consensus       288 --~~~~d~~~~~~~~~  301 (325)
                        ....++++.++++.
T Consensus       207 Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  207 YVVNELSNTVSVFDYD  222 (345)
T ss_dssp             EEEETTTTEEEEEEEE
T ss_pred             EEecCCCCcEEEEeec
Confidence              55566677776554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.47  E-value=9.8e-05  Score=66.65  Aligned_cols=139  Identities=9%  Similarity=0.114  Sum_probs=81.9

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecC--CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVS--AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~d--g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      ..+......|+|+|..++++.+.+  ..|.++++..        +.   ...+..+........|+|+|..++++....+
T Consensus       231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~--------g~---~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g  299 (419)
T PRK04043        231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT--------KT---LTQITNYPGIDVNGNFVEDDKRIVFVSDRLG  299 (419)
T ss_pred             CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC--------Cc---EEEcccCCCccCccEECCCCCEEEEEECCCC
Confidence            556666788999996565555444  4677778765        22   2233333333345689999985555555555


Q ss_pred             --cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC--------CcEEEEEccCCCCCCCeeEeec
Q 020480          202 --QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD--------QYLLIWDLRTPSVSKPVQSVVA  271 (325)
Q Consensus       202 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~  271 (325)
                        .|.+.|+..+..    ..+ ++.+.    ....|+|+|..++++....        ..|.+.|+.++.    ...+..
T Consensus       300 ~~~Iy~~dl~~g~~----~rl-t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~----~~~LT~  366 (419)
T PRK04043        300 YPNIFMKKLNSGSV----EQV-VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY----IRRLTA  366 (419)
T ss_pred             CceEEEEECCCCCe----EeC-ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC----eEECCC
Confidence              466667765532    111 11111    1248999986555555433        357788887765    333332


Q ss_pred             cCCCeeEEEeCCCCCc
Q 020480          272 HQSEVGVSILNASFRL  287 (325)
Q Consensus       272 h~~~v~~i~~~p~~~~  287 (325)
                      . .......|+|+|+.
T Consensus       367 ~-~~~~~p~~SPDG~~  381 (419)
T PRK04043        367 N-GVNQFPRFSSDGGS  381 (419)
T ss_pred             C-CCcCCeEECCCCCE
Confidence            2 23345889999983

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.46  E-value=0.00014  Score=64.21  Aligned_cols=167  Identities=16%  Similarity=0.202  Sum_probs=103.8

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  204 (325)
                      ....++.|+|++..++++.-....|.+|++....      +...+...+. ........+.|+|++...+++.-.++.|.
T Consensus       144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~------~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~  217 (345)
T PF10282_consen  144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT------GKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVS  217 (345)
T ss_dssp             TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-------TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred             ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC------ceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEE
Confidence            4567899999995555555455689999997611      0111122222 33456789999999996667777889999


Q ss_pred             EEeCCCCCCCCcccceEeeec------CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCC-CCCCCeeEeeccCCCee
Q 020480          205 LWDINAAPKNKSLEAMQIFKV------HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP-SVSKPVQSVVAHQSEVG  277 (325)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~------~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~  277 (325)
                      ++++.....  .+..+.....      .......++++|++..++++....++|.+|++... ...+.+..+.......+
T Consensus       218 v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr  295 (345)
T PF10282_consen  218 VFDYDPSDG--SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPR  295 (345)
T ss_dssp             EEEEETTTT--EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEE
T ss_pred             EEeecccCC--ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCcc
Confidence            999883221  1122222211      12257889999999777777778899999999432 22223333343345589


Q ss_pred             EEEeCCCCCc---cCCCCceEEeeec
Q 020480          278 VSILNASFRL---SHEDTCTCTHRHS  300 (325)
Q Consensus       278 ~i~~~p~~~~---~~~~d~~~~~~~~  300 (325)
                      .++++|+|++   +.-.++.+.++++
T Consensus       296 ~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  296 HFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             EEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEeCCCCEEEEEecCCCeEEEEEE
Confidence            9999999995   4445667777654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=6.5e-07  Score=76.20  Aligned_cols=104  Identities=20%  Similarity=0.268  Sum_probs=82.9

Q ss_pred             CCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec
Q 020480          169 SPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD  248 (325)
Q Consensus       169 ~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~  248 (325)
                      ++...+.+|...|.+++|+|...+++..++.+..|+|.|+++.      ..+..+..+ ..+++++|..+..+++..|-.
T Consensus       184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~------~~vssy~a~-~~~wSC~wDlde~h~IYaGl~  256 (463)
T KOG1645|consen  184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS------CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQ  256 (463)
T ss_pred             chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc------eeeeheecc-CCceeeeeccCCcceeEEecc
Confidence            3344566788899999999999989999999999999999986      345566666 789999999998899999999


Q ss_pred             CCcEEEEEccCCCCCCCeeEeec--cCCCeeEEEe
Q 020480          249 DQYLLIWDLRTPSVSKPVQSVVA--HQSEVGVSIL  281 (325)
Q Consensus       249 dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~i~~  281 (325)
                      .|.|.|||+|..+.  ++..+.+  ...+|..|+.
T Consensus       257 nG~VlvyD~R~~~~--~~~e~~a~~t~~pv~~i~~  289 (463)
T KOG1645|consen  257 NGMVLVYDMRQPEG--PLMELVANVTINPVHKIAP  289 (463)
T ss_pred             CceEEEEEccCCCc--hHhhhhhhhccCcceeecc
Confidence            99999999998775  4444432  2345555544

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.43  E-value=2.9e-07  Score=73.99  Aligned_cols=76  Identities=21%  Similarity=0.359  Sum_probs=67.8

Q ss_pred             CceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEcc
Q 020480          179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR  258 (325)
Q Consensus       179 ~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~  258 (325)
                      ..|++++-+|..++++++|+.||.+-+||.+...     .+...+..|+..++.+-|||.++..|.+++.||.+-.||..
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-----~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-----MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEccccc-----chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence            3499999999998899999999999999999873     35667889999999999999988889999999999999987


Q ss_pred             C
Q 020480          259 T  259 (325)
Q Consensus       259 ~  259 (325)
                      +
T Consensus       255 ~  255 (319)
T KOG4714|consen  255 T  255 (319)
T ss_pred             C
Confidence            5

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.42  E-value=8.6e-05  Score=66.12  Aligned_cols=144  Identities=12%  Similarity=0.149  Sum_probs=95.2

Q ss_pred             EEEecCCCCcEEEEEecC-----------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEE--
Q 020480          130 RARYMPQNPFLIATKTVS-----------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS--  196 (325)
Q Consensus       130 ~v~~~~~~~~~la~g~~d-----------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s--  196 (325)
                      .+.|++-|..+|+.++.|           .++++.++..          ......+ ...++|+++.|+|.+.. ++.  
T Consensus       222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g----------~s~~V~L-~k~GPVhdv~W~~s~~E-F~Vvy  289 (566)
T KOG2315|consen  222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG----------ESVSVPL-LKEGPVHDVTWSPSGRE-FAVVY  289 (566)
T ss_pred             EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC----------ceEEEec-CCCCCceEEEECCCCCE-EEEEE
Confidence            567888776666655432           2566666653          1111112 24689999999999984 444  


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe---cCCcEEEEEccCCCCCCCeeEeeccC
Q 020480          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG---DDQYLLIWDLRTPSVSKPVQSVVAHQ  273 (325)
Q Consensus       197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~h~  273 (325)
                      |-.-..+.|||++..       ++..+  -.++=+++-|+|.| ++++.+|   -.|.+-|||+.+.+.   +..+....
T Consensus       290 GfMPAkvtifnlr~~-------~v~df--~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~---i~~~~a~~  356 (566)
T KOG2315|consen  290 GFMPAKVTIFNLRGK-------PVFDF--PEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKL---IAKFKAAN  356 (566)
T ss_pred             ecccceEEEEcCCCC-------EeEeC--CCCCccceEECCCC-CEEEEeecCCCCCceEEEeccchhh---ccccccCC
Confidence            445678999999853       34433  34566789999987 6776666   458899999999764   66666543


Q ss_pred             CCeeEEEeCCCCCc----cCC----CCceEEeeec
Q 020480          274 SEVGVSILNASFRL----SHE----DTCTCTHRHS  300 (325)
Q Consensus       274 ~~v~~i~~~p~~~~----~~~----~d~~~~~~~~  300 (325)
                      .  +-..|+|+|++    +++    -|..+++|+.
T Consensus       357 t--t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  357 T--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             c--eEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            3  34789999995    222    3566777764

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.42  E-value=2e-05  Score=69.75  Aligned_cols=127  Identities=18%  Similarity=0.196  Sum_probs=84.5

Q ss_pred             cEE-EEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcc
Q 020480          139 FLI-ATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL  217 (325)
Q Consensus       139 ~~l-a~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  217 (325)
                      +++ ++-..+|.|.+.|..+          .+.+.++......-..+.++|+++ ++++++.||.|.++|+.+.+     
T Consensus         6 ~l~~V~~~~~~~v~viD~~t----------~~~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~-----   69 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGAT----------NKVVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLATGK-----   69 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-----------SEEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSS-----
T ss_pred             cEEEEEecCCCEEEEEECCC----------CeEEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEECCccc-----
Confidence            344 4556789999999887          455677765444434578999999 78888999999999999873     


Q ss_pred             cceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc-------CCCeeEEEeCCCCC
Q 020480          218 EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-------QSEVGVSILNASFR  286 (325)
Q Consensus       218 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-------~~~v~~i~~~p~~~  286 (325)
                       .+..+.. ......++++++|..+++++..++.+.++|.++.+   ++..+...       ...+.+|..+|...
T Consensus        70 -~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle---~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~  140 (369)
T PF02239_consen   70 -VVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE---PVKTIPTGGMPVDGPESRVAAIVASPGRP  140 (369)
T ss_dssp             -EEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT-----EEEEEE--EE-TTTS---EEEEEE-SSSS
T ss_pred             -EEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEecccccc---ceeecccccccccccCCCceeEEecCCCC
Confidence             4555554 34567899999996666666789999999999987   46665432       24567787777766

...

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=1.5e-06  Score=76.92  Aligned_cols=172  Identities=9%  Similarity=0.092  Sum_probs=108.4

Q ss_pred             eEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEE
Q 020480          116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL  195 (325)
Q Consensus       116 ~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~  195 (325)
                      +.+....+|+..|..+.--... +-+++++.|.+|++|.++...+..   +......++..|+.+|.++.|-.+.+ .++
T Consensus       726 irL~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~---~tsaCQfTY~aHkk~i~~igfL~~lr-~i~  800 (1034)
T KOG4190|consen  726 IRLCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEI---GTSACQFTYQAHKKPIHDIGFLADLR-SIA  800 (1034)
T ss_pred             eeeecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCcc---ccceeeeEhhhccCcccceeeeeccc-eee
Confidence            4444456788888887766544 689999999999999998643322   22234567789999999999988765 454


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceEee--ecCCccEEEEEeec--CCCcEEEEEecCCcEEEEEccCCCCCCCeeEe--
Q 020480          196 SGSDDAQICLWDINAAPKNKSLEAMQIF--KVHEGVVEDVAWHL--RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--  269 (325)
Q Consensus       196 s~s~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--  269 (325)
                        +.||-|++||.-.+..      +...  ....+.+..+..-|  +..-++|-|+...+|+++|.|..+........  
T Consensus       801 --ScD~giHlWDPFigr~------Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna  872 (1034)
T KOG4190|consen  801 --SCDGGIHLWDPFIGRL------LAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA  872 (1034)
T ss_pred             --eccCcceeecccccch------hHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC
Confidence              5579999999765532      1111  11112222222223  23334455588999999999998752223332  


Q ss_pred             eccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480          270 VAHQSEVGVSILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       270 ~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                      .+....+.+++..|.|..  .+-..|.+.+-|.
T Consensus       873 ~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDa  905 (1034)
T KOG4190|consen  873 PGPNALTRAIAVADKGNKLAAALSNGCIAILDA  905 (1034)
T ss_pred             CCCchheeEEEeccCcchhhHHhcCCcEEEEec
Confidence            233456899999998874  2223344444443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.40  E-value=6.2e-05  Score=66.71  Aligned_cols=151  Identities=10%  Similarity=0.089  Sum_probs=93.4

Q ss_pred             EEEEEeccCCCe-eEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEE
Q 020480          117 QIIQQINHDGEV-NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL  195 (325)
Q Consensus       117 ~~~~~~~h~~~v-~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~  195 (325)
                      +.+..+...+.+ ..+.|+|++ +++.+++.||.|.++|+.+          .+.+.++.. .....+++++++|..+++
T Consensus        27 ~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~----------~~~v~~i~~-G~~~~~i~~s~DG~~~~v   94 (369)
T PF02239_consen   27 KVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLAT----------GKVVATIKV-GGNPRGIAVSPDGKYVYV   94 (369)
T ss_dssp             SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTS----------SSEEEEEE--SSEEEEEEE--TTTEEEE
T ss_pred             eEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCc----------ccEEEEEec-CCCcceEEEcCCCCEEEE
Confidence            344556554444 447789998 5777778899999999987          345666654 345688999999995555


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceEeeec-------CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeE
Q 020480          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKV-------HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS  268 (325)
Q Consensus       196 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  268 (325)
                      ++...+.+.++|.++.+      ++..+..       ....+.++..+|.++.++++--..+.|.+-|......  ....
T Consensus        95 ~n~~~~~v~v~D~~tle------~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~--~~~~  166 (369)
T PF02239_consen   95 ANYEPGTVSVIDAETLE------PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN--LKVT  166 (369)
T ss_dssp             EEEETTEEEEEETTT--------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC--EEEE
T ss_pred             EecCCCceeEecccccc------ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc--ccee
Confidence            55688999999998863      3443322       2456778888887654555555568888888777643  2222


Q ss_pred             eeccCCCeeEEEeCCCCCc
Q 020480          269 VVAHQSEVGVSILNASFRL  287 (325)
Q Consensus       269 ~~~h~~~v~~i~~~p~~~~  287 (325)
                      ............|+|++++
T Consensus       167 ~i~~g~~~~D~~~dpdgry  185 (369)
T PF02239_consen  167 TIKVGRFPHDGGFDPDGRY  185 (369)
T ss_dssp             EEE--TTEEEEEE-TTSSE
T ss_pred             eecccccccccccCcccce
Confidence            3334556788999999984

...

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.40  E-value=3.3e-05  Score=67.49  Aligned_cols=143  Identities=14%  Similarity=0.124  Sum_probs=107.9

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCC-eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSA-EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      .++|.+.|.-..+..++ .-++.|..|| .+-||+...           ..+..+...-+.|.++..+|+|. .++.+..
T Consensus       355 qv~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~-----------~e~kr~e~~lg~I~av~vs~dGK-~~vvaNd  421 (668)
T COG4946         355 QVGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDG-----------GEVKRIEKDLGNIEAVKVSPDGK-KVVVAND  421 (668)
T ss_pred             EcCCCCceEEEEEccCC-cceEEeccCCceEEEEecCC-----------ceEEEeeCCccceEEEEEcCCCc-EEEEEcC
Confidence            45688888888888877 4889999999 999999987           22445666678899999999998 7888888


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC----cEEEEEccCCCCCCCeeEeeccCCC
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ----YLLIWDLRTPSVSKPVQSVVAHQSE  275 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~h~~~  275 (325)
                      ...+.+.|+.++..      ...-+...+-|+.+.|||++ ..+|-+--+|    .|+++|+..++    +.......+-
T Consensus       422 r~el~vididngnv------~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~~~K----iy~vTT~ta~  490 (668)
T COG4946         422 RFELWVIDIDNGNV------RLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGGK----IYDVTTPTAY  490 (668)
T ss_pred             ceEEEEEEecCCCe------eEecccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecCCCe----EEEecCCccc
Confidence            89999999998742      22223345679999999986 6887766554    58999999887    4444333333


Q ss_pred             eeEEEeCCCCCc
Q 020480          276 VGVSILNASFRL  287 (325)
Q Consensus       276 v~~i~~~p~~~~  287 (325)
                      =.+-+|.|+++.
T Consensus       491 DfsPaFD~d~ry  502 (668)
T COG4946         491 DFSPAFDPDGRY  502 (668)
T ss_pred             ccCcccCCCCcE
Confidence            445678888883

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.39  E-value=6.2e-06  Score=77.21  Aligned_cols=150  Identities=12%  Similarity=0.055  Sum_probs=110.5

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC-------
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-------  199 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-------  199 (325)
                      .|.-++.+.   +.+.+|...|+|.+-|.++          .++++++..|++.+.+++..  |+ +|++|+.       
T Consensus       179 ~v~imR~Nn---r~lf~G~t~G~V~LrD~~s----------~~~iht~~aHs~siSDfDv~--GN-lLitCG~S~R~~~l  242 (1118)
T KOG1275|consen  179 GVTIMRYNN---RNLFCGDTRGTVFLRDPNS----------FETIHTFDAHSGSISDFDVQ--GN-LLITCGYSMRRYNL  242 (1118)
T ss_pred             ceEEEEecC---cEEEeecccceEEeecCCc----------Cceeeeeeccccceeeeecc--CC-eEEEeecccccccc
Confidence            355555543   6899999999999999988          78899999999999888775  55 8888875       


Q ss_pred             --CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC-CCeeEeeccCCCe
Q 020480          200 --DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-KPVQSVVAHQSEV  276 (325)
Q Consensus       200 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v  276 (325)
                        |..|+|||+|..+.      +..+.-+.+ -.-+.|+|.=...+|+++..|...+-|..+.... ..+..+....+.+
T Consensus       243 ~~D~FvkVYDLRmmra------l~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i  315 (1118)
T KOG1275|consen  243 AMDPFVKVYDLRMMRA------LSPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGI  315 (1118)
T ss_pred             cccchhhhhhhhhhhc------cCCcccccC-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcc
Confidence              56689999998643      222222222 2567899987788999999999999995433321 1234444555669


Q ss_pred             eEEEeCCCCCc--cCCCCceEEeee
Q 020480          277 GVSILNASFRL--SHEDTCTCTHRH  299 (325)
Q Consensus       277 ~~i~~~p~~~~--~~~~d~~~~~~~  299 (325)
                      .+++++++|.+  .+..++.+.+|.
T Consensus       316 ~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  316 SAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eeEEecCCCceEEEecccCcEeeec
Confidence            99999999985  566778888885

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.38  E-value=3.3e-05  Score=68.65  Aligned_cols=135  Identities=15%  Similarity=0.250  Sum_probs=91.9

Q ss_pred             EeccCCCeeEEEecCCCCcEEEE-EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          121 QINHDGEVNRARYMPQNPFLIAT-KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~-g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      .+.-.++|.++.|+|++..+.++ |-.-..+.|||++.           .++..+.  .++=..+-|+|.|+ +++.++.
T Consensus       266 ~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-----------~~v~df~--egpRN~~~fnp~g~-ii~lAGF  331 (566)
T KOG2315|consen  266 PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-----------KPVFDFP--EGPRNTAFFNPHGN-IILLAGF  331 (566)
T ss_pred             ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-----------CEeEeCC--CCCccceEECCCCC-EEEEeec
Confidence            34568999999999998433333 44566899999986           6665553  45567899999999 5655554


Q ss_pred             ---CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe------cCCcEEEEEccCCCCCCCeeEee
Q 020480          200 ---DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG------DDQYLLIWDLRTPSVSKPVQSVV  270 (325)
Q Consensus       200 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~  270 (325)
                         -|.|-+||+...      +.+..+.+..  .+-+.|+|+|+ +|+|++      .|+.++||+.....    +....
T Consensus       332 GNL~G~mEvwDv~n~------K~i~~~~a~~--tt~~eW~PdGe-~flTATTaPRlrvdNg~KiwhytG~~----l~~~~  398 (566)
T KOG2315|consen  332 GNLPGDMEVWDVPNR------KLIAKFKAAN--TTVFEWSPDGE-YFLTATTAPRLRVDNGIKIWHYTGSL----LHEKM  398 (566)
T ss_pred             CCCCCceEEEeccch------hhccccccCC--ceEEEEcCCCc-EEEEEeccccEEecCCeEEEEecCce----eehhh
Confidence               388999999875      3455555443  34578999985 666665      37889999987644    22211


Q ss_pred             ccCCCeeEEEeCC
Q 020480          271 AHQSEVGVSILNA  283 (325)
Q Consensus       271 ~h~~~v~~i~~~p  283 (325)
                       ..+....+.|-|
T Consensus       399 -f~sEL~qv~W~P  410 (566)
T KOG2315|consen  399 -FKSELLQVEWRP  410 (566)
T ss_pred             -hhHhHhheeeee
Confidence             112466666665

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.36  E-value=1.2e-05  Score=74.05  Aligned_cols=138  Identities=17%  Similarity=0.175  Sum_probs=106.8

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCC-----------CCeEE
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK-----------EGHLL  195 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-----------~~~l~  195 (325)
                      .-+++.|+|.|  +||-|+.. .|.+-|...          .+.+..+.-|...|+.+.|.|..           .-+++
T Consensus        17 N~~A~Dw~~~G--LiAygshs-lV~VVDs~s----------~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliA   83 (1062)
T KOG1912|consen   17 NRNAADWSPSG--LIAYGSHS-LVSVVDSRS----------LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIA   83 (1062)
T ss_pred             cccccccCccc--eEEEecCc-eEEEEehhh----------hhhhhccccCccceeEEEeccCCCchhccCccccceeEE
Confidence            35678999988  88887755 788888877          56677888899999999998742           12678


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCC---CcEEEEEecCCcEEEEEccCCCCCCCeeEeecc
Q 020480          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH---EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH  272 (325)
Q Consensus       196 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h  272 (325)
                      ++...|.|.+||+..+.      .+..+..|...+..++|-|..   ..+|++-....++.+|+..+++.   +......
T Consensus        84 saD~~GrIil~d~~~~s------~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k---~Wk~~ys  154 (1062)
T KOG1912|consen   84 SADISGRIILVDFVLAS------VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK---FWKYDYS  154 (1062)
T ss_pred             eccccCcEEEEEehhhh------hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce---eeccccC
Confidence            88889999999999873      344567788899999997732   25677777788999999999984   6666655


Q ss_pred             CCCeeEEEeCCCCC
Q 020480          273 QSEVGVSILNASFR  286 (325)
Q Consensus       273 ~~~v~~i~~~p~~~  286 (325)
                      .....|+.++|...
T Consensus       155 ~~iLs~f~~DPfd~  168 (1062)
T KOG1912|consen  155 HEILSCFRVDPFDS  168 (1062)
T ss_pred             CcceeeeeeCCCCc
Confidence            66777788888543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.34  E-value=6.1e-07  Score=74.01  Aligned_cols=188  Identities=16%  Similarity=0.187  Sum_probs=122.2

Q ss_pred             CCCceEEEEEeccCCCeeEEEecCCC-CcEEEEEecCCeEEEEeCCCCCCCC------------CCCCCC----------
Q 020480          112 ANGKVQIIQQINHDGEVNRARYMPQN-PFLIATKTVSAEVYVFDYSKHPSKP------------PLDGAC----------  168 (325)
Q Consensus       112 ~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~la~g~~dg~v~vwd~~~~~~~~------------~~~~~~----------  168 (325)
                      .++.+...+...-...|+.+.|..++ ...+...+.|.+|++|.+.....+.            ..++..          
T Consensus        72 he~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lpr  151 (460)
T COG5170          72 HELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPR  151 (460)
T ss_pred             cccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhccc
Confidence            34455555566667789999998754 3455566889999999886531100            000000          


Q ss_pred             ----------CCcEEE-ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecC-----CccEEE
Q 020480          169 ----------SPDLRL-RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH-----EGVVED  232 (325)
Q Consensus       169 ----------~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~v~~  232 (325)
                                .|.+.. ..|.-.+.++.++.+.. .++++ .|=.|.+|++........+   ..++.|     ...|++
T Consensus       152 ls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e-t~lSa-DdLrINLWnl~i~D~sFnI---VDiKP~nmeeLteVItS  226 (460)
T COG5170         152 LSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE-TLLSA-DDLRINLWNLEIIDGSFNI---VDIKPHNMEELTEVITS  226 (460)
T ss_pred             ccccceEEEeccceeccccceeEeeeeeecCchh-eeeec-cceeeeeccccccCCceEE---EeccCccHHHHHHHHhh
Confidence                      011111 35677788999998887 56654 4778999998876543222   222333     346888


Q ss_pred             EEeecCCCcEEEEEecCCcEEEEEccCCCCC-CC--ee----------EeeccCCCeeEEEeCCCCCc-cCCCCceEEee
Q 020480          233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-KP--VQ----------SVVAHQSEVGVSILNASFRL-SHEDTCTCTHR  298 (325)
Q Consensus       233 v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-~~--~~----------~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~  298 (325)
                      ..|+|...+++.-.+..|.|++-|+|..... .+  +.          -+..-.+.|..+.|+++|++ ..-+-.++++|
T Consensus       227 aeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiw  306 (460)
T COG5170         227 AEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIW  306 (460)
T ss_pred             cccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEE
Confidence            9999988789989999999999999954310 00  11          11123457889999999986 44455799999


Q ss_pred             ecceee
Q 020480          299 HSRYLL  304 (325)
Q Consensus       299 ~~~~~~  304 (325)
                      ++++-.
T Consensus       307 Dvnm~k  312 (460)
T COG5170         307 DVNMAK  312 (460)
T ss_pred             eccccc
Confidence            987754

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.31  E-value=6.1e-05  Score=75.45  Aligned_cols=169  Identities=12%  Similarity=0.036  Sum_probs=103.8

Q ss_pred             eEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCC-CCCCCCCCc---EEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480          129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP-PLDGACSPD---LRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (325)
Q Consensus       129 ~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~-~~~~~~~~~---~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  204 (325)
                      ..++++|++..++++...++.|++|+........ ...+.....   ......-.....++++|++..++++-+.++.|+
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir  765 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR  765 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence            4689999655788888888999999986511000 000000000   000001124567999999875667777789999


Q ss_pred             EEeCCCCCCCCcc-------cceEeeec--------CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe
Q 020480          205 LWDINAAPKNKSL-------EAMQIFKV--------HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV  269 (325)
Q Consensus       205 iwd~~~~~~~~~~-------~~~~~~~~--------~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  269 (325)
                      +||+.++......       .....+..        .-.....++++++| .++++-..++.|++||..++.    +..+
T Consensus       766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~----v~ti  840 (1057)
T PLN02919        766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKR----VTTL  840 (1057)
T ss_pred             EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCe----EEEE
Confidence            9998865310000       00000100        01124578899987 588888999999999998765    3333


Q ss_pred             ec--------------cCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          270 VA--------------HQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       270 ~~--------------h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      .+              .-.....|+++++|++  +.+.+..+++|+...
T Consensus       841 aG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        841 AGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             eccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            21              1125678999999986  556778888888754

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.19  E-value=7.8e-05  Score=69.20  Aligned_cols=141  Identities=11%  Similarity=0.085  Sum_probs=95.8

Q ss_pred             CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCC----CCCeEEEEeCCCcEEEEeCCCCC
Q 020480          137 NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF----KEGHLLSGSDDAQICLWDINAAP  212 (325)
Q Consensus       137 ~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~----~~~~l~s~s~dg~i~iwd~~~~~  212 (325)
                      | .++++|+.||+|.|..+-+        .  ....++ ....++.+++++|+    ....+++|+..| +.++.-+-..
T Consensus        83 G-ey~asCS~DGkv~I~sl~~--------~--~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg  149 (846)
T KOG2066|consen   83 G-EYVASCSDDGKVVIGSLFT--------D--DEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG  149 (846)
T ss_pred             C-ceEEEecCCCcEEEeeccC--------C--ccceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence            5 7999999999999988866        1  212222 34568999999998    233799999988 7777544332


Q ss_pred             CCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC------CeeEEEeCCCCC
Q 020480          213 KNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS------EVGVSILNASFR  286 (325)
Q Consensus       213 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~------~v~~i~~~p~~~  286 (325)
                      ..   ..+ ......+.|.+++|.  | +++|-++++| |+|||+...+.   +..++....      .-..+.|.+..+
T Consensus       150 nk---~~v-~l~~~eG~I~~i~W~--g-~lIAWand~G-v~vyd~~~~~~---l~~i~~p~~~~R~e~fpphl~W~~~~~  218 (846)
T KOG2066|consen  150 NK---DSV-VLSEGEGPIHSIKWR--G-NLIAWANDDG-VKVYDTPTRQR---LTNIPPPSQSVRPELFPPHLHWQDEDR  218 (846)
T ss_pred             Cc---cce-eeecCccceEEEEec--C-cEEEEecCCC-cEEEeccccce---eeccCCCCCCCCcccCCCceEecCCCe
Confidence            21   111 345567899999997  3 6888888776 89999988774   333322112      235688888888


Q ss_pred             ccCCCCceEEeeecc
Q 020480          287 LSHEDTCTCTHRHSR  301 (325)
Q Consensus       287 ~~~~~d~~~~~~~~~  301 (325)
                      +.-|...++++-.++
T Consensus       219 LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  219 LVIGWGDSVKICSIK  233 (846)
T ss_pred             EEEecCCeEEEEEEe
Confidence            766666677765554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.18  E-value=0.0015  Score=55.56  Aligned_cols=163  Identities=10%  Similarity=0.112  Sum_probs=105.5

Q ss_pred             CCceEEEEEeccCCCe-eEEEecCCCCcEEEEEe-cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc----------
Q 020480          113 NGKVQIIQQINHDGEV-NRARYMPQNPFLIATKT-VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE----------  180 (325)
Q Consensus       113 ~~~~~~~~~~~h~~~v-~~v~~~~~~~~~la~g~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~----------  180 (325)
                      ++.+.++....-.+.- +.+++++++ .+++++. ..|.|.++-+...       +...+...+..|.+.          
T Consensus        75 ~G~Lt~ln~~~~~g~~p~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~d-------G~l~~~v~~~~h~g~~p~~rQ~~~h  146 (346)
T COG2706          75 DGRLTFLNRQTLPGSPPCYVSVDEDG-RFVFVANYHSGSVSVYPLQAD-------GSLQPVVQVVKHTGSGPHERQESPH  146 (346)
T ss_pred             CCeEEEeeccccCCCCCeEEEECCCC-CEEEEEEccCceEEEEEcccC-------CccccceeeeecCCCCCCccccCCc
Confidence            3566665555443333 789999999 4666554 4689999998762       223333333345544          


Q ss_pred             eEEEEecCCCCCeEEEEeC-CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480          181 GYGLSWSKFKEGHLLSGSD-DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (325)
Q Consensus       181 v~~l~~~p~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~  259 (325)
                      ++...+.|+++ ++++.+. --.|.+|++..+.....-  ...+ .-...-..|.|||+++...+.+--+++|-+|....
T Consensus       147 ~H~a~~tP~~~-~l~v~DLG~Dri~~y~~~dg~L~~~~--~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         147 VHSANFTPDGR-YLVVPDLGTDRIFLYDLDDGKLTPAD--PAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             cceeeeCCCCC-EEEEeecCCceEEEEEcccCcccccc--cccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence            89999999998 6666653 346999999966432111  1111 34567889999999976666777899999999987


Q ss_pred             C-CCCCCeeEee------ccCCCeeEEEeCCCCCc
Q 020480          260 P-SVSKPVQSVV------AHQSEVGVSILNASFRL  287 (325)
Q Consensus       260 ~-~~~~~~~~~~------~h~~~v~~i~~~p~~~~  287 (325)
                      . .....++.+.      .-......|..+|+|++
T Consensus       223 ~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrF  257 (346)
T COG2706         223 AVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRF  257 (346)
T ss_pred             CCceEEEeeeeccCccccCCCCceeEEEECCCCCE
Confidence            4 2111222221      11345778999999996

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.12  E-value=0.00048  Score=56.75  Aligned_cols=168  Identities=15%  Similarity=0.150  Sum_probs=98.9

Q ss_pred             eEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCC-----CCeEEEEeCCCc
Q 020480          129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFK-----EGHLLSGSDDAQ  202 (325)
Q Consensus       129 ~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~-----~~~l~s~s~dg~  202 (325)
                      ..++|+|++ .+||.+...|+|++||+.....-.     ..+...+. .-..+|.++.|.+..     ...|+.-..+|.
T Consensus        47 Rkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf~-----I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~  120 (282)
T PF15492_consen   47 RKLAWSPDC-TLLAYAESTGTIRVFDLMGSELFV-----IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ  120 (282)
T ss_pred             eEEEECCCC-cEEEEEcCCCeEEEEecccceeEE-----cCcccccCCccccceeeeEeeccccccccceeEEEEeccce
Confidence            468999999 799999999999999997511000     01111111 123456666664432     235777788888


Q ss_pred             EEEEeCCCCCCCCcccceEeee---cCCccEEEEEeecCCCcEEEEEe-cCC----------cEEEEEccCCCCC-----
Q 020480          203 ICLWDINAAPKNKSLEAMQIFK---VHEGVVEDVAWHLRHEYLFGSVG-DDQ----------YLLIWDLRTPSVS-----  263 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~---~~~~~v~~v~~~p~~~~~l~s~~-~dg----------~i~iwd~~~~~~~-----  263 (325)
                      ++-|-+..+... .....+.+.   .+...|.++.++|.. ++|+.|| ...          -+..|.+-+...-     
T Consensus       121 L~Sy~vs~gt~q-~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~  198 (282)
T PF15492_consen  121 LRSYLVSVGTNQ-GYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVT  198 (282)
T ss_pred             eeeEEEEcccCC-cceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcc
Confidence            888876432111 011222222   246789999999987 4655555 221          2556655443210     


Q ss_pred             ----------------C--CeeEe---eccCCCeeEEEeCCCCCc--cCCCCceEEeeecceee
Q 020480          264 ----------------K--PVQSV---VAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       264 ----------------~--~~~~~---~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~  304 (325)
                                      +  .+..+   ......|..|..+|+|.+  +...+|.+.+|.+..+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  199 SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence                            0  00000   112467889999999996  55677888888776654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.00  E-value=0.00085  Score=60.64  Aligned_cols=138  Identities=14%  Similarity=0.114  Sum_probs=82.5

Q ss_pred             CCeeEEEecCCCCcEEEEEec---CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC-
Q 020480          126 GEVNRARYMPQNPFLIATKTV---SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA-  201 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg-  201 (325)
                      +.+..-.|+|+|..+++..+.   ...|+++|+.+        +..   ..+....+......|+|++..++++.+.++ 
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t--------g~~---~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~  256 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT--------GKK---EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQ  256 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC--------CcE---EEEecCCCcEEeeEECCCCCEEEEEEccCCC
Confidence            366788999999544554333   35788889876        222   223334455667889999986666665554 


Q ss_pred             -cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc--EEEEEccCCCCCCCeeEeeccCCCeeE
Q 020480          202 -QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSEVGV  278 (325)
Q Consensus       202 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~  278 (325)
                       .|.++|+..+.       ...+..+........|+|+|..++.+....+.  |.+.|+.+++.    ..+......  .
T Consensus       257 ~~Iy~~dl~~g~-------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~----~rlt~~g~~--~  323 (419)
T PRK04043        257 PDIYLYDTNTKT-------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV----EQVVFHGKN--N  323 (419)
T ss_pred             cEEEEEECCCCc-------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe----EeCccCCCc--C
Confidence             57777876552       22233333323456899998666666555554  66667766552    222211111  2


Q ss_pred             EEeCCCCCc
Q 020480          279 SILNASFRL  287 (325)
Q Consensus       279 i~~~p~~~~  287 (325)
                      ..|+|+|+.
T Consensus       324 ~~~SPDG~~  332 (419)
T PRK04043        324 SSVSTYKNY  332 (419)
T ss_pred             ceECCCCCE
Confidence            489999983

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.96  E-value=2.3e-06  Score=77.17  Aligned_cols=164  Identities=14%  Similarity=0.177  Sum_probs=106.4

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEe----cCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-CCCceEEEEecCCCCCeEEE
Q 020480          122 INHDGEVNRARYMPQNPFLIATKT----VSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-HSTEGYGLSWSKFKEGHLLS  196 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~----~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s  196 (325)
                      -+|...+++++|++-+.+.||+|-    .|..+.|||+........    ..+.  +.+ ......+++|-.+.+ ++.+
T Consensus        99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPk----e~~~--fs~~~l~gqns~cwlrd~k-lvla  171 (783)
T KOG1008|consen   99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPK----ESPL--FSSSTLDGQNSVCWLRDTK-LVLA  171 (783)
T ss_pred             ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCc----cccc--cccccccCccccccccCcc-hhhc
Confidence            457789999999998767888873    456899999987422211    1111  111 233445889997777 8999


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEE-ccCCCCCCCeeEeeccC--
Q 020480          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD-LRTPSVSKPVQSVVAHQ--  273 (325)
Q Consensus       197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~~h~--  273 (325)
                      |.....++++|+|....       +...-.+..+..+...|-..+++++-. ||.|-+|| .+.-+.  ++..+...+  
T Consensus       172 Gm~sr~~~ifdlRqs~~-------~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnien--pl~~i~~~~N~  241 (783)
T KOG1008|consen  172 GMTSRSVHIFDLRQSLD-------SVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIEN--PLQIILRNENK  241 (783)
T ss_pred             ccccchhhhhhhhhhhh-------hhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhcc--HHHHHhhCCCC
Confidence            99999999999995421       111122335666777785557886655 99999999 555443  455543222  


Q ss_pred             --CCeeEEEeCCCC--Cc--cCCCCceEEeeecce
Q 020480          274 --SEVGVSILNASF--RL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       274 --~~v~~i~~~p~~--~~--~~~~d~~~~~~~~~~  302 (325)
                        ..+..++|+|..  .+  ..-+.++++.++++.
T Consensus       242 ~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  242 KPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             cccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence              248999999954  33  334456666665543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.91  E-value=0.0012  Score=65.35  Aligned_cols=179  Identities=12%  Similarity=0.104  Sum_probs=104.1

Q ss_pred             ceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCC----------CCC-C--------------C-CCC-
Q 020480          115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP----------SKP-P--------------L-DGA-  167 (325)
Q Consensus       115 ~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~----------~~~-~--------------~-~~~-  167 (325)
                      .++.+.  .-...|.+++|||++ .+||..+.+++|.+-+..-.+          ... +              . .++ 
T Consensus       112 ~~E~VG--~vd~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~  188 (928)
T PF04762_consen  112 EIEIVG--SVDSGILAASWSPDE-ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKA  188 (928)
T ss_pred             eeEEEE--EEcCcEEEEEECCCc-CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhh
Confidence            444433  346789999999998 688888888888876432110          000 0              0 000 


Q ss_pred             -----CCCc------EEEecCCCceEEEEecCCCCCeEEEEeC---C---CcEEEEeCCCCCCCCcccceEeeecCCccE
Q 020480          168 -----CSPD------LRLRGHSTEGYGLSWSKFKEGHLLSGSD---D---AQICLWDINAAPKNKSLEAMQIFKVHEGVV  230 (325)
Q Consensus       168 -----~~~~------~~~~~h~~~v~~l~~~p~~~~~l~s~s~---d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  230 (325)
                           ..|.      ..+. +.+.-..++|-.||. ++|+.+.   .   ..++||+-...       ...+...-.+--
T Consensus       189 aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~ReG~-------L~stSE~v~gLe  259 (928)
T PF04762_consen  189 AARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGE-YFAVSSVEPETGSRRVIRVYSREGE-------LQSTSEPVDGLE  259 (928)
T ss_pred             hhhhccCCCCCccccCccc-cCCCceEEEECCCCc-EEEEEEEEcCCCceeEEEEECCCce-------EEeccccCCCcc
Confidence                 0010      1122 344567899999999 7777764   3   47999997631       122222222334


Q ss_pred             EEEEeecCCCcEEEEEec---CCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCccC-CCCceEEeeecceeeec
Q 020480          231 EDVAWHLRHEYLFGSVGD---DQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRLSH-EDTCTCTHRHSRYLLYK  306 (325)
Q Consensus       231 ~~v~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~-~~d~~~~~~~~~~~~~~  306 (325)
                      .+++|.|.| ++||+...   ...|.+|.-...+...-...+......|..++|++++.+.+ -....+.+|....+-|-
T Consensus       260 ~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWY  338 (928)
T PF04762_consen  260 GALSWRPSG-NLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWY  338 (928)
T ss_pred             CCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEE
Confidence            568999998 68877764   34466665433221100111123456799999999998621 12234888877776663

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.90  E-value=0.0011  Score=65.48  Aligned_cols=144  Identities=13%  Similarity=0.148  Sum_probs=87.2

Q ss_pred             cCCCeeEEEecCCCCcEEEEEec---C---CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTV---S---AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~---d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  197 (325)
                      +...-..|+|..|| .+||+.+.   .   ..++||+-....           ..+...-.+--..++|-|.|+ ++|+.
T Consensus       208 ~dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~ReG~L-----------~stSE~v~gLe~~l~WrPsG~-lIA~~  274 (928)
T PF04762_consen  208 WDDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSREGEL-----------QSTSEPVDGLEGALSWRPSGN-LIASS  274 (928)
T ss_pred             cCCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECCCceE-----------EeccccCCCccCCccCCCCCC-EEEEE
Confidence            44466689999999 68887664   2   578999976411           111111122234789999998 88887


Q ss_pred             eC---CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee-ccC
Q 020480          198 SD---DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV-AHQ  273 (325)
Q Consensus       198 s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~h~  273 (325)
                      ..   ...|.+|.-+.-+.+.   ..-.+......|..++|++++ .+||....|. |.+|-..+..- ..-+.+. ...
T Consensus       275 q~~~~~~~VvFfErNGLrhge---F~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHW-YLKqei~~~~~  348 (928)
T PF04762_consen  275 QRLPDRHDVVFFERNGLRHGE---FTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHW-YLKQEIRFSSS  348 (928)
T ss_pred             EEcCCCcEEEEEecCCcEeee---EecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEE-EEEEEEEccCC
Confidence            64   3446666544332211   111122345679999999987 6888877655 99998877552 1112222 123


Q ss_pred             CCeeEEEeCCCCC
Q 020480          274 SEVGVSILNASFR  286 (325)
Q Consensus       274 ~~v~~i~~~p~~~  286 (325)
                      ..+..+.|+|...
T Consensus       349 ~~~~~~~Wdpe~p  361 (928)
T PF04762_consen  349 ESVNFVKWDPEKP  361 (928)
T ss_pred             CCCCceEECCCCC
Confidence            3455588988644

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.89  E-value=0.00023  Score=66.03  Aligned_cols=127  Identities=20%  Similarity=0.316  Sum_probs=91.7

Q ss_pred             eEEEEEec-cCCCeeEEEecCCC-----------CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEE
Q 020480          116 VQIIQQIN-HDGEVNRARYMPQN-----------PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG  183 (325)
Q Consensus       116 ~~~~~~~~-h~~~v~~v~~~~~~-----------~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  183 (325)
                      .+.++.+. |+..|+.++|.|-.           .-+||++...|.|-+||...          ...+..+..|.+++.+
T Consensus        45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~----------~s~~~~l~~~~~~~qd  114 (1062)
T KOG1912|consen   45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL----------ASVINWLSHSNDSVQD  114 (1062)
T ss_pred             hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh----------hhhhhhhcCCCcchhh
Confidence            34444454 77899999998832           23688889999999999987          3445667888899999


Q ss_pred             EEecCC---CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEcc
Q 020480          184 LSWSKF---KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR  258 (325)
Q Consensus       184 l~~~p~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~  258 (325)
                      ++|-+.   .+.+|+.-....++-+|+..+|.+      +..+........++.+.|-+.+.+..-+..|.+.+-+.-
T Consensus       115 l~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k------~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l  186 (1062)
T KOG1912|consen  115 LCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK------FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL  186 (1062)
T ss_pred             eeeeeccCcchheeEEecCCcEEEEEEccCCce------eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence            998664   335788888889999999999854      444444445566788888666666666666766666543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=0.00015  Score=62.13  Aligned_cols=80  Identities=9%  Similarity=0.198  Sum_probs=68.8

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      .|...|..++|+|....++..++.+..|+|.|+++          ...+..+..+ ..+++++|..+..+.+..|-..|.
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet----------~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~  259 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET----------SCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM  259 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEeccc----------ceeeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence            47789999999998856889999999999999988          3345556666 789999999999989999999999


Q ss_pred             EEEEeCCCCCC
Q 020480          203 ICLWDINAAPK  213 (325)
Q Consensus       203 i~iwd~~~~~~  213 (325)
                      |.|||++....
T Consensus       260 VlvyD~R~~~~  270 (463)
T KOG1645|consen  260 VLVYDMRQPEG  270 (463)
T ss_pred             EEEEEccCCCc
Confidence            99999998653

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=0.00021  Score=66.49  Aligned_cols=145  Identities=14%  Similarity=0.116  Sum_probs=100.3

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      ....++|++++.   +.|+.|+.+|.|++++...           .+ .+...|+..      .-.|. +++||+.||.|
T Consensus        38 ~~D~is~~av~~---~~~~~GtH~g~v~~~~~~~-----------~~-~~~~~~s~~------~~~Ge-y~asCS~DGkv   95 (846)
T KOG2066|consen   38 QNDAISCCAVHD---KFFALGTHRGAVYLTTCQG-----------NP-KTNFDHSSS------ILEGE-YVASCSDDGKV   95 (846)
T ss_pred             hhhHHHHHHhhc---ceeeeccccceEEEEecCC-----------cc-ccccccccc------ccCCc-eEEEecCCCcE
Confidence            345677777765   6899999999999999876           22 223345433      55677 89999999999


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecC----CCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR----HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS  279 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i  279 (325)
                      .|--+-+...      .+.+. -..++.+++++|+    ....+++||.-| +.++.-+-.....++ .+..-.++|.++
T Consensus        96 ~I~sl~~~~~------~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i  166 (846)
T KOG2066|consen   96 VIGSLFTDDE------ITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSI  166 (846)
T ss_pred             EEeeccCCcc------ceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEE
Confidence            9988877643      22222 3457889999996    235788999988 888876644432233 344557899999


Q ss_pred             EeCCCCCccCCCCceEEeeec
Q 020480          280 ILNASFRLSHEDTCTCTHRHS  300 (325)
Q Consensus       280 ~~~p~~~~~~~~d~~~~~~~~  300 (325)
                      .|.-+-...++++ .+++++.
T Consensus       167 ~W~g~lIAWand~-Gv~vyd~  186 (846)
T KOG2066|consen  167 KWRGNLIAWANDD-GVKVYDT  186 (846)
T ss_pred             EecCcEEEEecCC-CcEEEec
Confidence            9987665555444 4566554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.83  E-value=0.0019  Score=65.11  Aligned_cols=156  Identities=10%  Similarity=0.082  Sum_probs=97.4

Q ss_pred             eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-----------------CCceEEEEecCCC
Q 020480          128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-----------------STEGYGLSWSKFK  190 (325)
Q Consensus       128 v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h-----------------~~~v~~l~~~p~~  190 (325)
                      -..+++.+++..++++-..++.|+++|+...           .+.++.+-                 -...+.++++|++
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~-----------~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~  694 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNE-----------TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVN  694 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCC-----------EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCC
Confidence            4677888877434555455678999987651           12222110                 1134689999955


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeec---------------CCccEEEEEeecCCCcEEEEEecCCcEEEE
Q 020480          191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV---------------HEGVVEDVAWHLRHEYLFGSVGDDQYLLIW  255 (325)
Q Consensus       191 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~---------------~~~~v~~v~~~p~~~~~l~s~~~dg~i~iw  255 (325)
                      ..++++.+.++.|++||...+..       ..+.+               .-.....++++|++..++++-+.++.|++|
T Consensus       695 g~LyVad~~~~~I~v~d~~~g~v-------~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~  767 (1057)
T PLN02919        695 EKVYIAMAGQHQIWEYNISDGVT-------RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRAL  767 (1057)
T ss_pred             CeEEEEECCCCeEEEEECCCCeE-------EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEE
Confidence            54788888899999999876421       11111               112456799999986677888889999999


Q ss_pred             EccCCCCCC----------CeeEeec--------cCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          256 DLRTPSVSK----------PVQSVVA--------HQSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       256 d~~~~~~~~----------~~~~~~~--------h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      |+.++....          .+..+..        .-.....++++++|.+  +...+..++.|+..
T Consensus       768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~  833 (1057)
T PLN02919        768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA  833 (1057)
T ss_pred             ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence            998754200          0000000        0112457899999875  55667788888753

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.83  E-value=6.1e-05  Score=62.48  Aligned_cols=138  Identities=12%  Similarity=0.180  Sum_probs=95.5

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-----CceEEEEecCCCCCeEEE
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-----TEGYGLSWSKFKEGHLLS  196 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~~p~~~~~l~s  196 (325)
                      ..|+-.|+++.|+.+.. .+.+ ..|-.|.+|++.-..      + .-.+..++.|.     .-|++..|+|...+++.-
T Consensus       169 NaH~yhiNSiS~NsD~e-t~lS-aDdLrINLWnl~i~D------~-sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmY  239 (460)
T COG5170         169 NAHPYHINSISFNSDKE-TLLS-ADDLRINLWNLEIID------G-SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMY  239 (460)
T ss_pred             ccceeEeeeeeecCchh-eeee-ccceeeeeccccccC------C-ceEEEeccCccHHHHHHHHhhcccCHhHcceEEE
Confidence            35889999999999873 4555 467899999987621      1 11223344443     457899999998888999


Q ss_pred             EeCCCcEEEEeCCCCCCCCc---c-----c--ceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCe
Q 020480          197 GSDDAQICLWDINAAPKNKS---L-----E--AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV  266 (325)
Q Consensus       197 ~s~dg~i~iwd~~~~~~~~~---~-----~--~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  266 (325)
                      .+..|.|++-|+|.....-.   +     .  ...-+.+-.+.|..+.|+++| +++++-. =-+|+|||.+..+.  |+
T Consensus       240 SsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRd-yltvkiwDvnm~k~--pi  315 (460)
T COG5170         240 SSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRD-YLTVKIWDVNMAKN--PI  315 (460)
T ss_pred             ecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEec-cceEEEEecccccC--Cc
Confidence            99999999999995422100   0     0  011122334678899999987 5776554 46899999998876  78


Q ss_pred             eEeecc
Q 020480          267 QSVVAH  272 (325)
Q Consensus       267 ~~~~~h  272 (325)
                      .++..|
T Consensus       316 kTi~~h  321 (460)
T COG5170         316 KTIPMH  321 (460)
T ss_pred             eeechH
Confidence            887655

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.81  E-value=2e-05  Score=73.82  Aligned_cols=154  Identities=16%  Similarity=0.127  Sum_probs=105.4

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC-
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA-  201 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg-  201 (325)
                      .|....+|++|+... +.|++|+..|.|++|++.+        +  .......+|.++|+-+.=+.+|..+|.+++... 
T Consensus      1099 d~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~s--------G--~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSS--------G--SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred             ccccceeeEEeecCC-ceEEeeeccceEEEEEccC--------c--cccccccccccccccccccCCcceeeeeccccCc
Confidence            478899999999966 7999999999999999987        3  234557789999999999999985555555554 


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe----eccCCCee
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV----VAHQSEVG  277 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~  277 (325)
                      -..+|++....     .+.++|..    -.++.|+..-+ .-+.|+......+||+.+...   +.++    .+..-.-+
T Consensus      1168 lsaLW~~~s~~-----~~~Hsf~e----d~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~---l~tylt~~~~~~y~~n 1234 (1516)
T KOG1832|consen 1168 LSALWDASSTG-----GPRHSFDE----DKAVKFSNSLQ-FRALGTEADDALLYDVQTCSP---LQTYLTDTVTSSYSNN 1234 (1516)
T ss_pred             hHHHhcccccc-----Cccccccc----cceeehhhhHH-HHHhcccccceEEEecccCcH---HHHhcCcchhhhhhcc
Confidence            57799987632     34555543    45677876432 334455556788999999874   4442    11222336


Q ss_pred             EEEeCCCCCccCCCCceEEeeeccee
Q 020480          278 VSILNASFRLSHEDTCTCTHRHSRYL  303 (325)
Q Consensus       278 ~i~~~p~~~~~~~~d~~~~~~~~~~~  303 (325)
                      +..|+|...+.   -..+.+||+|..
T Consensus      1235 ~a~FsP~D~LI---lndGvLWDvR~~ 1257 (1516)
T KOG1832|consen 1235 LAHFSPCDTLI---LNDGVLWDVRIP 1257 (1516)
T ss_pred             ccccCCCcceE---eeCceeeeeccH
Confidence            77888876642   122345666553

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=4.6e-05  Score=67.88  Aligned_cols=134  Identities=12%  Similarity=0.151  Sum_probs=90.4

Q ss_pred             CcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCC-CcccceEeeecCCccEEEEEeecCCCcEEEEEec
Q 020480          170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD  248 (325)
Q Consensus       170 ~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~  248 (325)
                      .+..+.||+..|..++--.+.+ -+++++.|.+|++|.++..... ....|..+++.|+.+|.++-|-.+. +.++  +.
T Consensus       727 rL~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~--Sc  802 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSIA--SC  802 (1034)
T ss_pred             eeecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ceee--ec
Confidence            3566789999988887665555 7999999999999999864322 2334778899999999999998764 4554  55


Q ss_pred             CCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCC--CCc---cCCCCceEEeeecceeeeccC
Q 020480          249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNAS--FRL---SHEDTCTCTHRHSRYLLYKFP  308 (325)
Q Consensus       249 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~--~~~---~~~~d~~~~~~~~~~~~~~~~  308 (325)
                      ||.|++||.-.++....+..-..| +.+..+..-++  ..+   .++...++++.|.|...|...
T Consensus       803 D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E  866 (1034)
T KOG4190|consen  803 DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCE  866 (1034)
T ss_pred             cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceee
Confidence            899999998776631111111222 23333333332  222   346778899988888776543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.75  E-value=0.00046  Score=63.42  Aligned_cols=147  Identities=14%  Similarity=0.150  Sum_probs=97.0

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      |...|.--++...+ .+++.|+.-|.|++|+-..        +... ..+..+..+.+..+..++... ++|.|+..|.|
T Consensus        32 ~~~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~--------~~~~-~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V  100 (726)
T KOG3621|consen   32 FPARVKLTCVDATE-EYLAMGSSAGSVYLYNRHT--------GEMR-KLKNEGATGITCVRSVSSVEY-LVAAGTASGRV  100 (726)
T ss_pred             CcceEEEEEeecCC-ceEEEecccceEEEEecCc--------hhhh-cccccCccceEEEEEecchhH-hhhhhcCCceE
Confidence            33344444555555 7999999999999999776        2221 122233455667778888877 89999999999


Q ss_pred             EEEeCCCCCCCCcccceEee-ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCC-CCCCCeeEeeccCCCeeEEEe
Q 020480          204 CLWDINAAPKNKSLEAMQIF-KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP-SVSKPVQSVVAHQSEVGVSIL  281 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~i~~  281 (325)
                      .++-+......... .+... ..|+..|++++|++++ ..+.+|...|.|.+--+... ....+.+.+-...+.|..+..
T Consensus       101 ~v~ql~~~~p~~~~-~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~  178 (726)
T KOG3621|consen  101 SVFQLNKELPRDLD-YVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDY  178 (726)
T ss_pred             EeehhhccCCCcce-eeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeec
Confidence            99998875432211 12222 3378899999999998 57779999999998887762 111123333334556655555


Q ss_pred             CC
Q 020480          282 NA  283 (325)
Q Consensus       282 ~p  283 (325)
                      ..
T Consensus       179 ~q  180 (726)
T KOG3621|consen  179 LQ  180 (726)
T ss_pred             cc
Confidence            54

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.71  E-value=1.6e-05  Score=71.86  Aligned_cols=160  Identities=17%  Similarity=0.214  Sum_probs=106.7

Q ss_pred             CCCeeEEEecCCC-CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe----C
Q 020480          125 DGEVNRARYMPQN-PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS----D  199 (325)
Q Consensus       125 ~~~v~~v~~~~~~-~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s----~  199 (325)
                      ...+.|++++-.. ..++++|..+|.|.+-.++.....        ......+|...+++++|++-..+.||.|-    .
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrn  127 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRN  127 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc--------cceecccccccccccccccccHHHHHhhhhhhcc
Confidence            4456666666543 258999999999999998763221        12335678889999999998766777763    4


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeee-cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeE
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGV  278 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  278 (325)
                      |..+.|||+.+.-..+.-.+  .|. +......+++|-.+. .++.+|.....++++|+|....  ....+  .+..+..
T Consensus       128 ds~~~Iwdi~s~ltvPke~~--~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~--~~~sv--nTk~vqG  200 (783)
T KOG1008|consen  128 DSSLKIWDINSLLTVPKESP--LFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLD--SVSSV--NTKYVQG  200 (783)
T ss_pred             cCCccceecccccCCCcccc--ccccccccCccccccccCc-chhhcccccchhhhhhhhhhhh--hhhhh--hhhhccc
Confidence            67899999987632211111  111 233456688998664 6888999999999999995542  12222  2334566


Q ss_pred             EEeCC-C-CCccCCCCceEEeee
Q 020480          279 SILNA-S-FRLSHEDTCTCTHRH  299 (325)
Q Consensus       279 i~~~p-~-~~~~~~~d~~~~~~~  299 (325)
                      +..+| . +.+....|+.+.+||
T Consensus       201 ~tVdp~~~nY~cs~~dg~iAiwD  223 (783)
T KOG1008|consen  201 ITVDPFSPNYFCSNSDGDIAIWD  223 (783)
T ss_pred             ceecCCCCCceeccccCceeecc
Confidence            77777 2 234555689999999

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.69  E-value=0.019  Score=51.22  Aligned_cols=148  Identities=7%  Similarity=0.046  Sum_probs=92.4

Q ss_pred             eEEEecCCCCcEEEEEe----------cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE-
Q 020480          129 NRARYMPQNPFLIATKT----------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG-  197 (325)
Q Consensus       129 ~~v~~~~~~~~~la~g~----------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~-  197 (325)
                      ..+.|++.|..+++-.-          ....++++++..           ..+.......++|+..+|.|.+.. +++. 
T Consensus       226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-----------~~i~V~~~~~~pVhdf~W~p~S~~-F~vi~  293 (561)
T COG5354         226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-----------RSIPVEKDLKDPVHDFTWEPLSSR-FAVIS  293 (561)
T ss_pred             cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc-----------cccceeccccccceeeeecccCCc-eeEEe
Confidence            35778888743333211          113577777765           212222356789999999999884 5444 


Q ss_pred             -eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec---CCcEEEEEccCCCCCCCeeEeeccC
Q 020480          198 -SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD---DQYLLIWDLRTPSVSKPVQSVVAHQ  273 (325)
Q Consensus       198 -s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~h~  273 (325)
                       -.+..+.++|++..        +. +..-...=+.+.|+|.+ ++++.++-   .|.+-+||......  .+..+.+..
T Consensus       294 g~~pa~~s~~~lr~N--------l~-~~~Pe~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf~--~~~~~~~~n  361 (561)
T COG5354         294 GYMPASVSVFDLRGN--------LR-FYFPEQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRFK--VAGAFNGLN  361 (561)
T ss_pred             cccccceeecccccc--------eE-EecCCcccccccccCcc-cEEEEecCCccccceEEeccCCceE--EEEEeecCC
Confidence             47788999999864        11 22233344567899986 66666654   47799999877653  232444332


Q ss_pred             CCeeEEEeCCCCCc-----cC---CCCceEEeeecce
Q 020480          274 SEVGVSILNASFRL-----SH---EDTCTCTHRHSRY  302 (325)
Q Consensus       274 ~~v~~i~~~p~~~~-----~~---~~d~~~~~~~~~~  302 (325)
                        .+-+.|+|+|++     ++   -.|..+++|++.-
T Consensus       362 --~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g  396 (561)
T COG5354         362 --TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG  396 (561)
T ss_pred             --ceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence              334579999985     11   3467888887643

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.69  E-value=0.0056  Score=43.52  Aligned_cols=102  Identities=9%  Similarity=-0.043  Sum_probs=68.4

Q ss_pred             eeEEEecC---CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480          128 VNRARYMP---QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (325)
Q Consensus       128 v~~v~~~~---~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  204 (325)
                      |++++++.   +|.+.|++|+.|..|++|+-..            .+..+. -++.|+.|.-...+  .|+.+-.+|+|-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------------~~~Ei~-e~~~v~~L~~~~~~--~F~Y~l~NGTVG   66 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------------IVAEIT-ETDKVTSLCSLGGG--RFAYALANGTVG   66 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------------EEEEEe-cccceEEEEEcCCC--EEEEEecCCEEE
Confidence            45555554   5668899999999999998654            133333 45678888776653  699999999999


Q ss_pred             EEeCCCCCCCCcccceEeeecCCccEEEEEeec---CCCcEEEEEecCCcEE
Q 020480          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL---RHEYLFGSVGDDQYLL  253 (325)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p---~~~~~l~s~~~dg~i~  253 (325)
                      +|+-...        +...+.. ..+.++++..   +|..-|++|=.+|.|-
T Consensus        67 vY~~~~R--------lWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   67 VYDRSQR--------LWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEeCcce--------eeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            9986432        3333322 3355555432   3445688888888764

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.00026  Score=64.15  Aligned_cols=103  Identities=18%  Similarity=0.203  Sum_probs=77.8

Q ss_pred             eEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceE-EEEecCCCCCeE
Q 020480          116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGY-GLSWSKFKEGHL  194 (325)
Q Consensus       116 ~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~p~~~~~l  194 (325)
                      ++......-...|..+.|+|.- .++|.+..+|.|-+..++-           ..+.++.-+...++ +++|.|+|. ++
T Consensus        11 ~~~~~~~~l~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n~-----------qRlwtip~p~~~v~~sL~W~~DGk-ll   77 (665)
T KOG4640|consen   11 NETNGVMSLPINIKRIEWNPKM-DLIATRTEKGELLIHRLNW-----------QRLWTIPIPGENVTASLCWRPDGK-LL   77 (665)
T ss_pred             chhhhhhccccceEEEEEcCcc-chhheeccCCcEEEEEecc-----------ceeEeccCCCCccceeeeecCCCC-EE
Confidence            3333334456678889999987 6999999999999998874           55777776766776 999999998 99


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceEee-ecCCccEEEEEeec
Q 020480          195 LSGSDDAQICLWDINAAPKNKSLEAMQIF-KVHEGVVEDVAWHL  237 (325)
Q Consensus       195 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~p  237 (325)
                      +.|-.||+|++.|+.++..      +..+ ..-...|.++-|.|
T Consensus        78 aVg~kdG~I~L~Dve~~~~------l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   78 AVGFKDGTIRLHDVEKGGR------LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EEEecCCeEEEEEccCCCc------eeccccccccchheeeccc
Confidence            9999999999999998743      2221 12234567777764

>smart00320 WD40 WD40 repeats

Probab=97.53  E-value=0.00025  Score=39.40  Aligned_cols=37  Identities=35%  Similarity=0.443  Sum_probs=32.3

Q ss_pred             CcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEe
Q 020480          170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD  207 (325)
Q Consensus       170 ~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd  207 (325)
                      +...+..|...|.++.|++.+. .+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence            3556678889999999999886 899999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.00061  Score=61.88  Aligned_cols=94  Identities=10%  Similarity=0.201  Sum_probs=74.1

Q ss_pred             CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEE-EEEeecCCCcEEEEEecCCcEEEEE
Q 020480          178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVE-DVAWHLRHEYLFGSVGDDQYLLIWD  256 (325)
Q Consensus       178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~v~~~p~~~~~l~s~~~dg~i~iwd  256 (325)
                      ...+..+.|+|.-. ++|.+..+|.|.+.-+.-       ..+.++.-+...+. +++|.|+| .++|.|-.||+|++.|
T Consensus        20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~-------qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~D   90 (665)
T KOG4640|consen   20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLNW-------QRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHD   90 (665)
T ss_pred             ccceEEEEEcCccc-hhheeccCCcEEEEEecc-------ceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEE
Confidence            34678999999988 999999999998888773       34666665666666 99999997 7999999999999999


Q ss_pred             ccCCCCCCCeeEe-eccCCCeeEEEeCC
Q 020480          257 LRTPSVSKPVQSV-VAHQSEVGVSILNA  283 (325)
Q Consensus       257 ~~~~~~~~~~~~~-~~h~~~v~~i~~~p  283 (325)
                      ..++..   +... ..-..+|.++-|++
T Consensus        91 ve~~~~---l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   91 VEKGGR---LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccCCCc---eeccccccccchheeeccc
Confidence            999874   4442 22345778888874

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.50  E-value=0.012  Score=52.16  Aligned_cols=142  Identities=12%  Similarity=0.020  Sum_probs=102.0

Q ss_pred             ecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC-cEEEEeCCCC
Q 020480          133 YMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA-QICLWDINAA  211 (325)
Q Consensus       133 ~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg-~i~iwd~~~~  211 (325)
                      |++....++|..+. |+..+.+...           ... .-.+|...|.-..+.-+.. -++.|..|| .+-|+|.+++
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~-----------~~~-iqv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~  392 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWD-----------GYS-IQVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGG  392 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCC-----------Cee-EEcCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCc
Confidence            44444467777664 5777776654           111 1236777888888888777 689999999 8999999986


Q ss_pred             CCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-eccCCCeeEEEeCCCCCc---
Q 020480          212 PKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSEVGVSILNASFRL---  287 (325)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~i~~~p~~~~---  287 (325)
                      .       ...+...-+.|.++..+|+| ..++.+.....|-+.|+.+++    +..+ +..-+-|+.++|||++++   
T Consensus       393 e-------~kr~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngn----v~~idkS~~~lItdf~~~~nsr~iAY  460 (668)
T COG4946         393 E-------VKRIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGN----VRLIDKSEYGLITDFDWHPNSRWIAY  460 (668)
T ss_pred             e-------EEEeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCC----eeEecccccceeEEEEEcCCceeEEE
Confidence            3       34456666789999999998 578888888999999999998    3444 334567999999999995   


Q ss_pred             ---cCCCCceEEeeec
Q 020480          288 ---SHEDTCTCTHRHS  300 (325)
Q Consensus       288 ---~~~~d~~~~~~~~  300 (325)
                         .+-....+++++.
T Consensus       461 afP~gy~tq~Iklydm  476 (668)
T COG4946         461 AFPEGYYTQSIKLYDM  476 (668)
T ss_pred             ecCcceeeeeEEEEec
Confidence               2333345555543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.46  E-value=0.011  Score=52.75  Aligned_cols=131  Identities=16%  Similarity=0.202  Sum_probs=85.8

Q ss_pred             ccCCCeeEEEecCCCCcEEEE--EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          123 NHDGEVNRARYMPQNPFLIAT--KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~--g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      .-.++|...+|.|.+ +.+++  |-.+..+.+++++.           +....+  -...=..+.|+|.++ +++.++.|
T Consensus       272 ~~~~pVhdf~W~p~S-~~F~vi~g~~pa~~s~~~lr~-----------Nl~~~~--Pe~~rNT~~fsp~~r-~il~agF~  336 (561)
T COG5354         272 DLKDPVHDFTWEPLS-SRFAVISGYMPASVSVFDLRG-----------NLRFYF--PEQKRNTIFFSPHER-YILFAGFD  336 (561)
T ss_pred             cccccceeeeecccC-CceeEEecccccceeeccccc-----------ceEEec--CCcccccccccCccc-EEEEecCC
Confidence            567899999999987 45554  34677899999986           222222  233345678999998 66666554


Q ss_pred             ---CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe------cCCcEEEEEccCCCCCCCeeEeec
Q 020480          201 ---AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG------DDQYLLIWDLRTPSVSKPVQSVVA  271 (325)
Q Consensus       201 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~  271 (325)
                         |.+-+||....-     .++..+.+.+  ..-+.|+|+++ ++.+..      .|..+.|||+.....    .    
T Consensus       337 nl~gni~i~~~~~rf-----~~~~~~~~~n--~s~~~wspd~q-F~~~~~ts~k~~~Dn~i~l~~v~g~~~----f----  400 (561)
T COG5354         337 NLQGNIEIFDPAGRF-----KVAGAFNGLN--TSYCDWSPDGQ-FYDTDTTSEKLRVDNSIKLWDVYGAKV----F----  400 (561)
T ss_pred             ccccceEEeccCCce-----EEEEEeecCC--ceEeeccCCce-EEEecCCCcccccCcceEEEEecCchh----h----
Confidence               789999987542     2343455433  34467999985 444443      478899999977652    1    


Q ss_pred             cCCCeeEEEeCCCCCc
Q 020480          272 HQSEVGVSILNASFRL  287 (325)
Q Consensus       272 h~~~v~~i~~~p~~~~  287 (325)
                         ..+.+.|.|.|+.
T Consensus       401 ---el~~~~W~p~~~~  413 (561)
T COG5354         401 ---ELTNITWDPSGQY  413 (561)
T ss_pred             ---hhhhccccCCccc
Confidence               3444566665553

>smart00320 WD40 WD40 repeats

Probab=97.45  E-value=0.00036  Score=38.66  Aligned_cols=37  Identities=30%  Similarity=0.506  Sum_probs=32.2

Q ss_pred             ceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEE
Q 020480          219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD  256 (325)
Q Consensus       219 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd  256 (325)
                      +...+..|...|.+++|++.+ .++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            456677888899999999976 6899999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.45  E-value=0.018  Score=48.07  Aligned_cols=152  Identities=14%  Similarity=0.116  Sum_probs=94.2

Q ss_pred             CCceEEEEEec----cCCCeeEEEecCCCCcEEEEEecC--------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc
Q 020480          113 NGKVQIIQQIN----HDGEVNRARYMPQNPFLIATKTVS--------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE  180 (325)
Q Consensus       113 ~~~~~~~~~~~----h~~~v~~v~~~~~~~~~la~g~~d--------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~  180 (325)
                      .++++.+....    .....+.+++.|+| ++.++....        |.|..++...           + +..+...-..
T Consensus        69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~~-----------~-~~~~~~~~~~  135 (246)
T PF08450_consen   69 TGKVTVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPDG-----------K-VTVVADGLGF  135 (246)
T ss_dssp             TTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS-----------E-EEEEEEEESS
T ss_pred             CCcEEEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCCC-----------e-EEEEecCccc
Confidence            34555544442    34578899999998 577765433        4566666542           1 2222223345


Q ss_pred             eEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCC-CcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480          181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (325)
Q Consensus       181 v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~  259 (325)
                      ...|+|+|++..++++-+..+.|..+++...... ........+....+..-.+++..+| ++.++....+.|.++|.. 
T Consensus       136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~-  213 (246)
T PF08450_consen  136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD-  213 (246)
T ss_dssp             EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-
T ss_pred             ccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC-
Confidence            6899999999855667788899999998754321 0001111222222347789999987 788888889999999988 


Q ss_pred             CCCCCCeeEeeccCCCeeEEEeC
Q 020480          260 PSVSKPVQSVVAHQSEVGVSILN  282 (325)
Q Consensus       260 ~~~~~~~~~~~~h~~~v~~i~~~  282 (325)
                      ++   .+..+......+++++|.
T Consensus       214 G~---~~~~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  214 GK---LLREIELPVPRPTNCAFG  233 (246)
T ss_dssp             SC---EEEEEE-SSSSEEEEEEE
T ss_pred             cc---EEEEEcCCCCCEEEEEEE
Confidence            55   255554444588999994

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=0.00047  Score=60.10  Aligned_cols=175  Identities=13%  Similarity=-0.012  Sum_probs=113.1

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC-
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-  199 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-  199 (325)
                      .+-|...|+.+.....  +++.+++.||.++.|.-..-       .....+..+..|...+.+++.+-++. ++.|.+. 
T Consensus         5 symhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~i-------sGvEfVKhFraHL~~I~sl~~S~dg~-L~~Sv~d~   74 (558)
T KOG0882|consen    5 SYMHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRI-------SGVEFVKHFRAHLGVILSLAVSYDGW-LFRSVEDP   74 (558)
T ss_pred             hhcccceeeeEeeehh--heEEeeecchhhhhcCCCCc-------cceeehhhhHHHHHHHHhhhccccce-eEeeccCc
Confidence            3457777777665553  59999999999999986530       01222344567888899999999988 8888777 


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCC--cEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE--YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG  277 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  277 (325)
                      |..++++|+........++    +..-.+.+. ...+|...  .+-++.-.+|.+.++|-+...+. ....-.-|.++|.
T Consensus        75 Dhs~KvfDvEn~DminmiK----L~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q-~~~fkklH~sPV~  148 (558)
T KOG0882|consen   75 DHSVKVFDVENFDMINMIK----LVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ-DGYFKKLHFSPVK  148 (558)
T ss_pred             ccceeEEEeeccchhhhcc----cccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCc-cceecccccCceE
Confidence            9999999988653321111    111112121 12233211  23334457899999999987752 3444467999999


Q ss_pred             EEEeCCCCCc--cCCCCceEEeeecceeeeccCeeEE
Q 020480          278 VSILNASFRL--SHEDTCTCTHRHSRYLLYKFPFFVL  312 (325)
Q Consensus       278 ~i~~~p~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~  312 (325)
                      .+.++|.+..  +....|.+..|...- ..++|...+
T Consensus       149 ~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l  184 (558)
T KOG0882|consen  149 KIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNL  184 (558)
T ss_pred             EEEeeccccceeeccccceeEeecCCC-cccCccccc
Confidence            9999998774  555557788887653 344444433

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.40  E-value=0.00069  Score=62.48  Aligned_cols=117  Identities=14%  Similarity=0.128  Sum_probs=86.2

Q ss_pred             CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCC---------CcccceEeeecCCccEEEEEeecCCCcEEEEEec
Q 020480          178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN---------KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD  248 (325)
Q Consensus       178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~---------~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~  248 (325)
                      .....++.|+.... +++.|+.||.++|-.+.+....         ..+..-+++.+|+..|..+.|+... ..|-+...
T Consensus        14 nvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt   91 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDT   91 (1189)
T ss_pred             CceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCC
Confidence            45678999999877 8999999999999987764321         1222345678999999999999875 57878889


Q ss_pred             CCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEe
Q 020480          249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTH  297 (325)
Q Consensus       249 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~  297 (325)
                      +|.|-+|-+-.+.-. .-..-...++.|.+++|+.+|.-  ..-.||.+.+
T Consensus        92 ~GlIiVWmlykgsW~-EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIV  141 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWC-EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIV  141 (1189)
T ss_pred             CceEEEEeeecccHH-HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence            999999999887631 11112445778999999998872  3334555544

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.33  E-value=0.0094  Score=53.84  Aligned_cols=144  Identities=10%  Similarity=0.080  Sum_probs=80.2

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEE--EeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYV--FDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~v--wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      ..+.-..-+|+|+|.+++++...||...|  +|+..        +.   ...+..-.+.-+.=.|+|+|..++++.+..|
T Consensus       236 ~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~--------~~---~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G  304 (425)
T COG0823         236 FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG--------KN---LPRLTNGFGINTSPSWSPDGSKIVFTSDRGG  304 (425)
T ss_pred             cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC--------Cc---ceecccCCccccCccCCCCCCEEEEEeCCCC
Confidence            34444456899999777778888886555  55554        11   2223332333336679999997777777888


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc--EEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSEVGVS  279 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~i  279 (325)
                      .-.||-.......     ...+......-..-.|+|+|..++.....+|.  |.+.|+.++..   +..+ .+......-
T Consensus       305 ~p~I~~~~~~g~~-----~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~---~~~l-t~~~~~e~p  375 (425)
T COG0823         305 RPQIYLYDLEGSQ-----VTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK---IRIL-TSTYLNESP  375 (425)
T ss_pred             CcceEEECCCCCc-----eeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc---EEEc-cccccCCCC
Confidence            7666654433221     12222222222267899998644444433454  66666665552   2222 223333445


Q ss_pred             EeCCCCCc
Q 020480          280 ILNASFRL  287 (325)
Q Consensus       280 ~~~p~~~~  287 (325)
                      .|.++|+.
T Consensus       376 s~~~ng~~  383 (425)
T COG0823         376 SWAPNGRM  383 (425)
T ss_pred             CcCCCCce
Confidence            67777763

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.32  E-value=0.033  Score=46.19  Aligned_cols=145  Identities=10%  Similarity=0.034  Sum_probs=87.9

Q ss_pred             EEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC---CceEEEEecCCCCCeEEEEeCCCcEEEEe
Q 020480          131 ARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS---TEGYGLSWSKFKEGHLLSGSDDAQICLWD  207 (325)
Q Consensus       131 v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~p~~~~~l~s~s~dg~i~iwd  207 (325)
                      ++.+.+| ++||+ -.|..|.+-..+.        .-...+.+.....   ..=..++|+|++. +||.+...|+|++||
T Consensus         3 ~~~~~~G-k~lAi-~qd~~iEiRsa~D--------df~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~vfd   71 (282)
T PF15492_consen    3 LALSSDG-KLLAI-LQDQCIEIRSAKD--------DFSSIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIRVFD   71 (282)
T ss_pred             eeecCCC-cEEEE-EeccEEEEEeccC--------CchheeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEEEEe
Confidence            4556667 56666 5677888877665        2222233333222   2346899999998 999999999999999


Q ss_pred             CCCCCCCCcccceEeee-cCCccEEEEEeecCC-----CcEEEEEecCCcEEEEEccCC--CCCCCeeEe---eccCCCe
Q 020480          208 INAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRH-----EYLFGSVGDDQYLLIWDLRTP--SVSKPVQSV---VAHQSEV  276 (325)
Q Consensus       208 ~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~-----~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~---~~h~~~v  276 (325)
                      +... ....+.+...+. .-...|..+.|.+..     ...|++-..+|.++=|-+..+  +.-+..+++   ..+...|
T Consensus        72 l~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi  150 (282)
T PF15492_consen   72 LMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGI  150 (282)
T ss_pred             cccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCce
Confidence            9753 211222222111 123456666665432     235667778888888876432  211123333   2246789


Q ss_pred             eEEEeCCCCCc
Q 020480          277 GVSILNASFRL  287 (325)
Q Consensus       277 ~~i~~~p~~~~  287 (325)
                      +++.|+|..++
T Consensus       151 ~~~vy~p~h~L  161 (282)
T PF15492_consen  151 NSAVYHPKHRL  161 (282)
T ss_pred             eEEEEcCCCCE
Confidence            99999998663

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.30  E-value=0.0064  Score=57.43  Aligned_cols=142  Identities=11%  Similarity=0.059  Sum_probs=90.3

Q ss_pred             EecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC-----cEEEE
Q 020480          132 RYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA-----QICLW  206 (325)
Q Consensus       132 ~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg-----~i~iw  206 (325)
                      +|++.+ ..+|.|+.+|.|.+++-.-           +.+..+..+...+...-|.-++.++|++.+.|+     .++||
T Consensus        30 c~~s~~-~~vvigt~~G~V~~Ln~s~-----------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw   97 (933)
T KOG2114|consen   30 CCSSST-GSVVIGTADGRVVILNSSF-----------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIW   97 (933)
T ss_pred             EEcCCC-ceEEEeeccccEEEecccc-----------eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEe
Confidence            355555 6899999999999988654           334556666655333445555555888877765     48999


Q ss_pred             eCCCCCCCCcccce---Eeee----cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC-CCeeEeeccCCCeeE
Q 020480          207 DINAAPKNKSLEAM---QIFK----VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-KPVQSVVAHQSEVGV  278 (325)
Q Consensus       207 d~~~~~~~~~~~~~---~~~~----~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~  278 (325)
                      ++..........++   +.+.    ....++.+++.+.+- ..+|.|-.+|.|..+.-.-.+.. ....-......+|+.
T Consensus        98 ~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITg  176 (933)
T KOG2114|consen   98 DLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITG  176 (933)
T ss_pred             cccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCcee
Confidence            99876543322333   2221    134567888888774 68899999999998854321110 011222334678888


Q ss_pred             EEeCCCCC
Q 020480          279 SILNASFR  286 (325)
Q Consensus       279 i~~~p~~~  286 (325)
                      +++..++.
T Consensus       177 L~~~~d~~  184 (933)
T KOG2114|consen  177 LALRSDGK  184 (933)
T ss_pred             eEEecCCc
Confidence            88887766

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.28  E-value=0.0034  Score=56.36  Aligned_cols=134  Identities=14%  Similarity=0.165  Sum_probs=85.0

Q ss_pred             eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC--------
Q 020480          128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD--------  199 (325)
Q Consensus       128 v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~--------  199 (325)
                      =+-+.|||.| .+|++--.-| |.+|-=..          ...++.+ .|. .|..+.|||... +|+|=+.        
T Consensus       213 etyv~wSP~G-TYL~t~Hk~G-I~lWGG~~----------f~r~~RF-~Hp-~Vq~idfSP~Ek-YLVT~s~~p~~~~~~  277 (698)
T KOG2314|consen  213 ETYVRWSPKG-TYLVTFHKQG-IALWGGES----------FDRIQRF-YHP-GVQFIDFSPNEK-YLVTYSPEPIIVEED  277 (698)
T ss_pred             eeeEEecCCc-eEEEEEeccc-eeeecCcc----------HHHHHhc-cCC-CceeeecCCccc-eEEEecCCccccCcc
Confidence            3568999999 6888865554 77886544          3334444 354 588999999988 7887542        


Q ss_pred             ---CCcEEEEeCCCCCCCCcccceEeeec--CCccE-EEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC
Q 020480          200 ---DAQICLWDINAAPKNKSLEAMQIFKV--HEGVV-EDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ  273 (325)
Q Consensus       200 ---dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v-~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~  273 (325)
                         ...++|||+++|...      +.|..  ....+ .-+.||.++ .++|--. -.+|.||+..+...   +..-.-.-
T Consensus       278 d~e~~~l~IWDI~tG~lk------rsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~-~~sisIyEtpsf~l---ld~Kslki  346 (698)
T KOG2314|consen  278 DNEGQQLIIWDIATGLLK------RSFPVIKSPYLKWPIFRWSHDD-KYFARMT-GNSISIYETPSFML---LDKKSLKI  346 (698)
T ss_pred             cCCCceEEEEEccccchh------cceeccCCCccccceEEeccCC-ceeEEec-cceEEEEecCceee---ecccccCC
Confidence               257999999998543      33322  12222 236899887 4665444 46799998876441   21111223


Q ss_pred             CCeeEEEeCCCCCc
Q 020480          274 SEVGVSILNASFRL  287 (325)
Q Consensus       274 ~~v~~i~~~p~~~~  287 (325)
                      ..|....|+|.+.+
T Consensus       347 ~gIr~FswsP~~~l  360 (698)
T KOG2314|consen  347 SGIRDFSWSPTSNL  360 (698)
T ss_pred             ccccCcccCCCcce
Confidence            45777788887653

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.27  E-value=0.0018  Score=61.38  Aligned_cols=108  Identities=18%  Similarity=0.283  Sum_probs=76.2

Q ss_pred             cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCccc
Q 020480          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE  218 (325)
Q Consensus       139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  218 (325)
                      ..+.-|+....+-.+|++.          .+..+...-..+.|+-++-+  +. .+.+|...|+|.+-|.++.      .
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~----------~~e~r~~~v~a~~v~imR~N--nr-~lf~G~t~G~V~LrD~~s~------~  208 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNT----------EKETRTTNVSASGVTIMRYN--NR-NLFCGDTRGTVFLRDPNSF------E  208 (1118)
T ss_pred             cceeecchhhheeeeeccc----------ceeeeeeeccCCceEEEEec--Cc-EEEeecccceEEeecCCcC------c
Confidence            3455566666777788876          12222222223345555543  44 8999999999999999887      5


Q ss_pred             ceEeeecCCccEEEEEeecCCCcEEEEEec---------CCcEEEEEccCCCCCCCeeE
Q 020480          219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGD---------DQYLLIWDLRTPSVSKPVQS  268 (325)
Q Consensus       219 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~  268 (325)
                      .++++.+|++.|.++...  | ++|++||.         |..|+|||+|+.+...|+..
T Consensus       209 ~iht~~aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~  264 (1118)
T KOG1275|consen  209 TIHTFDAHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF  264 (1118)
T ss_pred             eeeeeeccccceeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCCccc
Confidence            689999999999877654  4 78989983         67789999999886555543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.22  E-value=0.021  Score=51.58  Aligned_cols=120  Identities=9%  Similarity=0.125  Sum_probs=75.4

Q ss_pred             eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC---CCcEEEEeCCCCCCCCcccceEeeec
Q 020480          149 EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD---DAQICLWDINAAPKNKSLEAMQIFKV  225 (325)
Q Consensus       149 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~  225 (325)
                      .+.|+.++.         +..|+-.+ .-...|...+|-|.|. .+++-+.   ..++.+|-+.+.....  ..+..+..
T Consensus       426 n~eIfrire---------KdIpve~v-elke~vi~FaWEP~gd-kF~vi~g~~~k~tvsfY~~e~~~~~~--~lVk~~dk  492 (698)
T KOG2314|consen  426 NLEIFRIRE---------KDIPVEVV-ELKESVIAFAWEPHGD-KFAVISGNTVKNTVSFYAVETNIKKP--SLVKELDK  492 (698)
T ss_pred             eEEEEEeec---------cCCCceee-ecchheeeeeeccCCC-eEEEEEccccccceeEEEeecCCCch--hhhhhhcc
Confidence            456677665         22334333 3456889999999998 5655443   3578899888533221  22333332


Q ss_pred             CCccEEEEEeecCCCcEEEEE---ecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc
Q 020480          226 HEGVVEDVAWHLRHEYLFGSV---GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL  287 (325)
Q Consensus       226 ~~~~v~~v~~~p~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~  287 (325)
                        ...+.+.|+|.|. +++.+   |..|.+.++|+.-...  .......| ...+.+.|.|.|++
T Consensus       493 --~~~N~vfwsPkG~-fvvva~l~s~~g~l~F~D~~~a~~--k~~~~~eh-~~at~veWDPtGRY  551 (698)
T KOG2314|consen  493 --KFANTVFWSPKGR-FVVVAALVSRRGDLEFYDTDYADL--KDTASPEH-FAATEVEWDPTGRY  551 (698)
T ss_pred             --cccceEEEcCCCc-EEEEEEecccccceEEEecchhhh--hhccCccc-cccccceECCCCCE
Confidence              4578899999985 55444   3578999999885332  11111223 34677899999996

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.17  E-value=0.0013  Score=61.94  Aligned_cols=110  Identities=14%  Similarity=0.264  Sum_probs=80.4

Q ss_pred             eEEEecCCCCcEEEEEe----cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480          129 NRARYMPQNPFLIATKT----VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (325)
Q Consensus       129 ~~v~~~~~~~~~la~g~----~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  204 (325)
                      +-..|+|..+ ++|+++    ..|.|.||--...         ...-.+.+-   .+++++|+|..- .|+.|-.-|.+.
T Consensus        19 ti~SWHPseP-lfAVA~fS~er~GSVtIfadtGE---------Pqr~Vt~P~---hatSLCWHpe~~-vLa~gwe~g~~~   84 (1416)
T KOG3617|consen   19 TISSWHPSEP-LFAVASFSPERGGSVTIFADTGE---------PQRDVTYPV---HATSLCWHPEEF-VLAQGWEMGVSD   84 (1416)
T ss_pred             cccccCCCCc-eeEEEEecCCCCceEEEEecCCC---------CCcccccce---ehhhhccChHHH-HHhhccccceeE
Confidence            3357888874 777765    4578888864431         111111222   346799999877 899999999999


Q ss_pred             EEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (325)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~  259 (325)
                      +|......      .-.....|...|..+.|+++| +.++++..-|.|.+|....
T Consensus        85 v~~~~~~e------~htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   85 VQKTNTTE------THTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             EEecCCce------eeeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEeee
Confidence            99987652      233345689999999999998 7999999999999998763

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.13  E-value=0.0039  Score=57.54  Aligned_cols=114  Identities=11%  Similarity=-0.012  Sum_probs=77.6

Q ss_pred             ceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480          180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (325)
Q Consensus       180 ~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~  259 (325)
                      .|.--+++..+. +++.|+.-|.+++|+-..+..     ......+..+.+...+.+++. .++|.|+..|.|.++.+..
T Consensus        35 ~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~-----~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~  107 (726)
T KOG3621|consen   35 RVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEM-----RKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNK  107 (726)
T ss_pred             eEEEEEeecCCc-eEEEecccceEEEEecCchhh-----hcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhc
Confidence            343344555566 899999999999999876632     122233344556667788875 7889999999999999887


Q ss_pred             CCCCCCeeEe---eccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480          260 PSVSKPVQSV---VAHQSEVGVSILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       260 ~~~~~~~~~~---~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                      ......+..-   +.|+..|++++|++++.-  +|...|.+..-.+
T Consensus       108 ~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L  153 (726)
T KOG3621|consen  108 ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL  153 (726)
T ss_pred             cCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence            4432122221   347889999999999983  6655566555433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.12  E-value=0.0028  Score=59.76  Aligned_cols=71  Identities=17%  Similarity=0.269  Sum_probs=58.9

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE-EecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR-LRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  204 (325)
                      -.+++++|+|.. -.||.|-.-|.+.+|....           ...++ ...|..++..+.|+++|. .++|+..-|.+.
T Consensus        60 ~hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~-----------~e~htv~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~  126 (1416)
T KOG3617|consen   60 VHATSLCWHPEE-FVLAQGWEMGVSDVQKTNT-----------TETHTVVETHPAPIQGLDWSHDGT-VLMTLDNPGSVH  126 (1416)
T ss_pred             eehhhhccChHH-HHHhhccccceeEEEecCC-----------ceeeeeccCCCCCceeEEecCCCC-eEEEcCCCceeE
Confidence            345679999976 6888998999999999876           22233 347999999999999999 899999999999


Q ss_pred             EEeCC
Q 020480          205 LWDIN  209 (325)
Q Consensus       205 iwd~~  209 (325)
                      +|...
T Consensus       127 lwr~d  131 (1416)
T KOG3617|consen  127 LWRYD  131 (1416)
T ss_pred             EEEee
Confidence            99766

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.09  E-value=0.0023  Score=38.08  Aligned_cols=36  Identities=28%  Similarity=0.271  Sum_probs=30.6

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSK  157 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~  157 (325)
                      .......|.+++|+|.. .++|.|+.+|.|.+|.++.
T Consensus         7 ~k~l~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen    7 EKNLPSRVSCMSWCPTM-DLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             ccCCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCC
Confidence            33455679999999998 6999999999999999854

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.06  E-value=0.084  Score=44.07  Aligned_cols=131  Identities=11%  Similarity=0.021  Sum_probs=81.3

Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEec-CCCCCeEEEEeCCCcEEEEeC
Q 020480          130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS-KFKEGHLLSGSDDAQICLWDI  208 (325)
Q Consensus       130 ~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-p~~~~~l~s~s~dg~i~iwd~  208 (325)
                      +..|.+....++++-...+.|..|+...           .....+...  ...++.+. +++  .++.+...+ +.++|.
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~-----------~~~~~~~~~--~~~G~~~~~~~g--~l~v~~~~~-~~~~d~   67 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDT-----------GEVEVIDLP--GPNGMAFDRPDG--RLYVADSGG-IAVVDP   67 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTT-----------TEEEEEESS--SEEEEEEECTTS--EEEEEETTC-EEEEET
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCC-----------CeEEEEecC--CCceEEEEccCC--EEEEEEcCc-eEEEec
Confidence            5678884447888877889999999876           112222222  26777777 554  466666544 455588


Q ss_pred             CCCCCCCcccceEeee--c-CCccEEEEEeecCCCcEEEEEecC--------CcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480          209 NAAPKNKSLEAMQIFK--V-HEGVVEDVAWHLRHEYLFGSVGDD--------QYLLIWDLRTPSVSKPVQSVVAHQSEVG  277 (325)
Q Consensus       209 ~~~~~~~~~~~~~~~~--~-~~~~v~~v~~~p~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~h~~~v~  277 (325)
                      .++..    ..+....  . .....+++++.|+| ++.++....        |.|..++.. ++    +......-...+
T Consensus        68 ~~g~~----~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~----~~~~~~~~~~pN  137 (246)
T PF08450_consen   68 DTGKV----TVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GK----VTVVADGLGFPN  137 (246)
T ss_dssp             TTTEE----EEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE----EEEEEEEESSEE
T ss_pred             CCCcE----EEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-Ce----EEEEecCccccc
Confidence            77632    2232321  1 34678999999998 576666543        446666665 33    344433456678


Q ss_pred             EEEeCCCCC
Q 020480          278 VSILNASFR  286 (325)
Q Consensus       278 ~i~~~p~~~  286 (325)
                      .|+|+|+++
T Consensus       138 Gi~~s~dg~  146 (246)
T PF08450_consen  138 GIAFSPDGK  146 (246)
T ss_dssp             EEEEETTSS
T ss_pred             ceEECCcch
Confidence            999999997

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.01  E-value=0.02  Score=55.13  Aligned_cols=138  Identities=7%  Similarity=-0.049  Sum_probs=82.6

Q ss_pred             cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc-eEEEEec----CCCCCeEEEEeCCCcEEEEeCCCCCCCCcccce
Q 020480          146 VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE-GYGLSWS----KFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM  220 (325)
Q Consensus       146 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~----p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  220 (325)
                      ....|+-.|+..          .+.+.....|... |..++=.    .-.+..-+.|-.+..+..||.|...........
T Consensus       502 ~~~~ly~mDLe~----------GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  502 NPNKLYKMDLER----------GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             CCCceEEEecCC----------CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            345666677765          3335555544432 4433221    111224667778899999999975421000001


Q ss_pred             EeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc-cCCCCceEEeee
Q 020480          221 QIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL-SHEDTCTCTHRH  299 (325)
Q Consensus       221 ~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~  299 (325)
                      ..+ .......|++-..+|  .||.|+.+|.||+||-- +..  .-..+.+...||.+|..+.+|++ .+..+..+.+.+
T Consensus       572 k~Y-~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~~--AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~  645 (794)
T PF08553_consen  572 KQY-SSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GKR--AKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID  645 (794)
T ss_pred             ccc-ccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-chh--hhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence            111 234456777776654  79999999999999943 332  23445677899999999999996 443444444444

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.98  E-value=0.053  Score=53.49  Aligned_cols=116  Identities=16%  Similarity=0.263  Sum_probs=72.4

Q ss_pred             eEEEecCCCCcEEEE-----EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe---CC
Q 020480          129 NRARYMPQNPFLIAT-----KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS---DD  200 (325)
Q Consensus       129 ~~v~~~~~~~~~la~-----g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s---~d  200 (325)
                      +.|.|..+| .++|+     ......|+|||.......     ...+      ..+.-.+++|-|.|. ++++-.   .|
T Consensus       199 ~~IsWRgDg-~~fAVs~~~~~~~~RkirV~drEg~Lns-----~se~------~~~l~~~LsWkPsgs-~iA~iq~~~sd  265 (1265)
T KOG1920|consen  199 TSISWRGDG-EYFAVSFVESETGTRKIRVYDREGALNS-----TSEP------VEGLQHSLSWKPSGS-LIAAIQCKTSD  265 (1265)
T ss_pred             ceEEEccCC-cEEEEEEEeccCCceeEEEecccchhhc-----ccCc------ccccccceeecCCCC-eEeeeeecCCC
Confidence            468999998 68887     333379999998741110     0111      122335899999888 777753   45


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEE---EecCCcEEEEEccCCC
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGS---VGDDQYLLIWDLRTPS  261 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s---~~~dg~i~iwd~~~~~  261 (325)
                      +.|.+|.-+.-..+.   ....+......|..++|+.++ .+||.   ......|++|-+.+..
T Consensus       266 ~~IvffErNGL~hg~---f~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  266 SDIVFFERNGLRHGE---FVLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             CcEEEEecCCccccc---cccCCcccccchheeeecCCC-CceeeeecccccceEEEEEecCeE
Confidence            578888766543321   111122233448999999886 57766   4444559999887643

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.84  E-value=0.017  Score=52.27  Aligned_cols=142  Identities=11%  Similarity=0.105  Sum_probs=85.1

Q ss_pred             CCeeEEEecCCCCcEEEEE--ecC-CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          126 GEVNRARYMPQNPFLIATK--TVS-AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g--~~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      ..+..-+|+|++..+....  ... ..+.++++..        +....+..+.++.   ..-+|+|+|..++++...||.
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~--------g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~  261 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNT--------GKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGS  261 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccC--------CccceeeccCCcc---CCccCCCCCCEEEEEECCCCC
Confidence            4555667888875433322  122 4588889887        3344344444444   467899999978888888887


Q ss_pred             EEEE--eCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          203 ICLW--DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       203 i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      ..||  |+....       ...+....+.-..=.|+|+|..++.+.+..|.-.||-+.....  ....+......-..-.
T Consensus       262 ~~iy~~dl~~~~-------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~--~~~riT~~~~~~~~p~  332 (425)
T COG0823         262 PDIYLMDLDGKN-------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS--QVTRLTFSGGGNSNPV  332 (425)
T ss_pred             ccEEEEcCCCCc-------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC--ceeEeeccCCCCcCcc
Confidence            5555  555442       1122322222235689999987777777888877776554332  1333332222223677


Q ss_pred             eCCCCCc
Q 020480          281 LNASFRL  287 (325)
Q Consensus       281 ~~p~~~~  287 (325)
                      |+|+|+.
T Consensus       333 ~SpdG~~  339 (425)
T COG0823         333 WSPDGDK  339 (425)
T ss_pred             CCCCCCE
Confidence            9999984

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.83  E-value=0.071  Score=52.64  Aligned_cols=172  Identities=15%  Similarity=0.185  Sum_probs=97.7

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCC-----CC--------CCCCCCCCCCcEEEecC-------------
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKH-----PS--------KPPLDGACSPDLRLRGH-------------  177 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~-----~~--------~~~~~~~~~~~~~~~~h-------------  177 (325)
                      -...|.+++|+|+. ..++..+..+++.+-+..-.     +.        +...-+..+....+.|.             
T Consensus       108 vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e  186 (1265)
T KOG1920|consen  108 VDNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKE  186 (1265)
T ss_pred             ccCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccc
Confidence            35789999999998 68888787777776543110     00        00000111111112211             


Q ss_pred             --------CCceEEEEecCCCCCeEEEE-----eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEE
Q 020480          178 --------STEGYGLSWSKFKEGHLLSG-----SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFG  244 (325)
Q Consensus       178 --------~~~v~~l~~~p~~~~~l~s~-----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  244 (325)
                              .+.=+++.|--+|. ++++.     .....|+|||....-.       ..-....+.-.+++|-|.| .++|
T Consensus       187 k~~~~~~~~~~~~~IsWRgDg~-~fAVs~~~~~~~~RkirV~drEg~Ln-------s~se~~~~l~~~LsWkPsg-s~iA  257 (1265)
T KOG1920|consen  187 KALEQIEQDDHKTSISWRGDGE-YFAVSFVESETGTRKIRVYDREGALN-------STSEPVEGLQHSLSWKPSG-SLIA  257 (1265)
T ss_pred             ccccchhhccCCceEEEccCCc-EEEEEEEeccCCceeEEEecccchhh-------cccCcccccccceeecCCC-CeEe
Confidence                    11224689999988 67762     3337899999872211       1111222334578999987 5776


Q ss_pred             EEe---cCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCcc-----CCCCceEEeeecceeee
Q 020480          245 SVG---DDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRLS-----HEDTCTCTHRHSRYLLY  305 (325)
Q Consensus       245 s~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~-----~~~d~~~~~~~~~~~~~  305 (325)
                      +-.   .|+.|.+|.-..-+...-.........+|..++|+.++.+.     ...-..+++|....+.|
T Consensus       258 ~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW  326 (1265)
T KOG1920|consen  258 AIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW  326 (1265)
T ss_pred             eeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence            654   56678888755433211122222233459999999998852     23334488998777665

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.83  E-value=0.018  Score=50.68  Aligned_cols=164  Identities=12%  Similarity=-0.051  Sum_probs=104.6

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEec-CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCC--CCeEEEEe
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTV-SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK--EGHLLSGS  198 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~--~~~l~s~s  198 (325)
                      ..|.+.|..++.+-++ .++.+++. |..++++|+....        ......+..-.+.+.. ..++..  ..+-++.-
T Consensus        50 raHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~D--------minmiKL~~lPg~a~w-v~skGd~~s~IAVs~~  119 (558)
T KOG0882|consen   50 RAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFD--------MINMIKLVDLPGFAEW-VTSKGDKISLIAVSLF  119 (558)
T ss_pred             HHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccc--------hhhhcccccCCCceEE-ecCCCCeeeeEEeecc
Confidence            3588899999999888 78888777 9999999998621        1111112111121111 112221  11233344


Q ss_pred             CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC-CCCC-----------CCe
Q 020480          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT-PSVS-----------KPV  266 (325)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~-----------~~~  266 (325)
                      .+|.+.++|-.....    .......-|.++|..+.+++.+ ..+++....|.|.-|.... .+..           .-+
T Consensus       120 ~sg~i~VvD~~~d~~----q~~~fkklH~sPV~~i~y~qa~-Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL  194 (558)
T KOG0882|consen  120 KSGKIFVVDGFGDFC----QDGYFKKLHFSPVKKIRYNQAG-DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL  194 (558)
T ss_pred             cCCCcEEECCcCCcC----ccceecccccCceEEEEeeccc-cceeeccccceeEeecCCCcccCccccccccccccchh
Confidence            678999999876532    2233445689999999999987 4777888899999998873 1100           011


Q ss_pred             eEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480          267 QSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       267 ~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                      ..+...+....++.|+|+|.-  .-+.|..++++..
T Consensus       195 y~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~  230 (558)
T KOG0882|consen  195 YGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF  230 (558)
T ss_pred             hcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence            222234567889999999874  4558888888654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.65  E-value=0.089  Score=46.17  Aligned_cols=121  Identities=12%  Similarity=0.152  Sum_probs=74.2

Q ss_pred             EecC-CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-------CCCceEEEEecCCCCCeEEEEe-----
Q 020480          132 RYMP-QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-------HSTEGYGLSWSKFKEGHLLSGS-----  198 (325)
Q Consensus       132 ~~~~-~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~s-----  198 (325)
                      .|.+ +| .++.+... |.|.+-|+.......     ..+...+..       ..+...-++++|++..+++...     
T Consensus       200 ~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~-----~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~  272 (352)
T TIGR02658       200 AYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKF-----LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKW  272 (352)
T ss_pred             ceEcCCC-cEEEEecC-CeEEEEecCCCccee-----cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccc
Confidence            3455 56 45555344 999999976521111     111111111       1223344999999985444332     


Q ss_pred             ----CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCC-cEEEEEecCCcEEEEEccCCCCCCCeeEe
Q 020480          199 ----DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE-YLFGSVGDDQYLLIWDLRTPSVSKPVQSV  269 (325)
Q Consensus       199 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  269 (325)
                          ..+.|.++|..+.+      .+..+. -...+..++++|++. .++++...++.|.++|..+.+.   +.++
T Consensus       273 thk~~~~~V~ViD~~t~k------vi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~---i~~i  338 (352)
T TIGR02658       273 THKTASRFLFVVDAKTGK------RLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE---LSSV  338 (352)
T ss_pred             cccCCCCEEEEEECCCCe------EEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE---Eeee
Confidence                22579999998763      344433 245789999999986 4555555789999999999884   5555

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.58  E-value=0.004  Score=59.08  Aligned_cols=106  Identities=15%  Similarity=0.175  Sum_probs=79.6

Q ss_pred             CCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe
Q 020480          168 CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG  247 (325)
Q Consensus       168 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~  247 (325)
                      .++..++..|+...++++|+...+ +|+.|+..|.|+++++.++..      .....+|.+.|+.+.-+.+|...|.+++
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~------e~s~ncH~SavT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSM------EESVNCHQSAVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCccc------cccccccccccccccccCCcceeeeecc
Confidence            344566778889999999999887 899999999999999999843      5566889999999998888875555554


Q ss_pred             cCC-cEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC
Q 020480          248 DDQ-YLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR  286 (325)
Q Consensus       248 ~dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~  286 (325)
                      ... ...+|++.....  +.+++..    -.++.|+....
T Consensus      1164 ~S~PlsaLW~~~s~~~--~~Hsf~e----d~~vkFsn~~q 1197 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGG--PRHSFDE----DKAVKFSNSLQ 1197 (1516)
T ss_pred             ccCchHHHhccccccC--ccccccc----cceeehhhhHH
Confidence            444 678999876332  4555532    34577776533

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.52  E-value=0.14  Score=48.97  Aligned_cols=165  Identities=8%  Similarity=0.089  Sum_probs=101.5

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCC-----eEEEEeCCCCCCCCCCCCCCCCcE----EEec-----CCCceEEEEecCC
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSA-----EVYVFDYSKHPSKPPLDGACSPDL----RLRG-----HSTEGYGLSWSKF  189 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg-----~v~vwd~~~~~~~~~~~~~~~~~~----~~~~-----h~~~v~~l~~~p~  189 (325)
                      ++..+-..-+...+.++|++-+.|+     .|++|++.......      .|..    .+.+     ...++.+++.+.+
T Consensus        63 ~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~------sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~  136 (933)
T KOG2114|consen   63 YEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN------SPQCLYEHRIFTIKNPTNPSPASSLAVSED  136 (933)
T ss_pred             cchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC------CcceeeeeeeeccCCCCCCCcceEEEEEcc
Confidence            4434333333433446777766654     58999998632111      1222    1222     3467889999988


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe
Q 020480          190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV  269 (325)
Q Consensus       190 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  269 (325)
                      -. .+|.|-.+|.|..+.-+-.+...  ...........+|+.+.+.-++...+ .+..-..|.+|.+.....  ....+
T Consensus       137 l~-~Iv~Gf~nG~V~~~~GDi~RDrg--sr~~~~~~~~~pITgL~~~~d~~s~l-Fv~Tt~~V~~y~l~gr~p--~~~~l  210 (933)
T KOG2114|consen  137 LK-TIVCGFTNGLVICYKGDILRDRG--SRQDYSHRGKEPITGLALRSDGKSVL-FVATTEQVMLYSLSGRTP--SLKVL  210 (933)
T ss_pred             cc-EEEEEecCcEEEEEcCcchhccc--cceeeeccCCCCceeeEEecCCceeE-EEEecceeEEEEecCCCc--ceeee
Confidence            66 89999999999988543221110  11222233457899999988776532 333345689999984431  34557


Q ss_pred             eccCCCeeEEEeCCCCC-ccCCCCceEEeeec
Q 020480          270 VAHQSEVGVSILNASFR-LSHEDTCTCTHRHS  300 (325)
Q Consensus       270 ~~h~~~v~~i~~~p~~~-~~~~~d~~~~~~~~  300 (325)
                      ..|+.+++|..|++... +.++.+..+.+++.
T Consensus       211 d~~G~~lnCss~~~~t~qfIca~~e~l~fY~s  242 (933)
T KOG2114|consen  211 DNNGISLNCSSFSDGTYQFICAGSEFLYFYDS  242 (933)
T ss_pred             ccCCccceeeecCCCCccEEEecCceEEEEcC
Confidence            88899999999998544 66666666666654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.45  E-value=0.22  Score=43.75  Aligned_cols=101  Identities=9%  Similarity=-0.087  Sum_probs=67.2

Q ss_pred             CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe---------CCCcEEEEeCCCCCCCCccc
Q 020480          148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS---------DDAQICLWDINAAPKNKSLE  218 (325)
Q Consensus       148 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s---------~dg~i~iwd~~~~~~~~~~~  218 (325)
                      ++|.+.|...          .+.+.++..-..+ ..+ ++|++..++++.+         .+..|.+||..+.+.     
T Consensus        27 ~~v~ViD~~~----------~~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-----   89 (352)
T TIGR02658        27 TQVYTIDGEA----------GRVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-----   89 (352)
T ss_pred             ceEEEEECCC----------CEEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-----
Confidence            7899999887          3434555432222 234 9999996566666         689999999998743     


Q ss_pred             ceEeeec-------CCccEEEEEeecCCCcEEEEEec-CCcEEEEEccCCCCCCCeeEe
Q 020480          219 AMQIFKV-------HEGVVEDVAWHLRHEYLFGSVGD-DQYLLIWDLRTPSVSKPVQSV  269 (325)
Q Consensus       219 ~~~~~~~-------~~~~v~~v~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~  269 (325)
                       +..+.-       .......++++|+|..++++--. +..|-+.|+.+++.   +..+
T Consensus        90 -~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv---v~ei  144 (352)
T TIGR02658        90 -IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF---VRMM  144 (352)
T ss_pred             -EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE---EEEE
Confidence             333221       12234468899998645544424 89999999999884   5544

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.42  E-value=0.37  Score=42.03  Aligned_cols=126  Identities=14%  Similarity=0.118  Sum_probs=80.4

Q ss_pred             CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCC-CCCcEEEecCCCceEEEEecCCCCC
Q 020480          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA-CSPDLRLRGHSTEGYGLSWSKFKEG  192 (325)
Q Consensus       114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~  192 (325)
                      .+++.+.....+++|++++-.. + . |++| ..+.|.+|++..        .. ..+...+. ....++++...  ++ 
T Consensus        77 ~~l~~i~~~~~~g~V~ai~~~~-~-~-lv~~-~g~~l~v~~l~~--------~~~l~~~~~~~-~~~~i~sl~~~--~~-  140 (321)
T PF03178_consen   77 FKLKLIHSTEVKGPVTAICSFN-G-R-LVVA-VGNKLYVYDLDN--------SKTLLKKAFYD-SPFYITSLSVF--KN-  140 (321)
T ss_dssp             -EEEEEEEEEESS-EEEEEEET-T-E-EEEE-ETTEEEEEEEET--------TSSEEEEEEE--BSSSEEEEEEE--TT-
T ss_pred             eEEEEEEEEeecCcceEhhhhC-C-E-EEEe-ecCEEEEEEccC--------cccchhhheec-ceEEEEEEecc--cc-
Confidence            4678777788899999999883 3 3 4443 347999999987        22 22222222 22366777665  44 


Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (325)
Q Consensus       193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~  259 (325)
                      +++.|..-..+.++..+....  .+..+. -......++++.+-+++ ..++.+..+|.+.++....
T Consensus       141 ~I~vgD~~~sv~~~~~~~~~~--~l~~va-~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  141 YILVGDAMKSVSLLRYDEENN--KLILVA-RDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEEEESSSSEEEEEEETTTE---EEEEE-EESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-S
T ss_pred             EEEEEEcccCEEEEEEEccCC--EEEEEE-ecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECC
Confidence            899999999999886554211  111111 12235568888888776 5888999999999998873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.36  E-value=0.26  Score=42.03  Aligned_cols=144  Identities=16%  Similarity=0.126  Sum_probs=88.9

Q ss_pred             CeeEEEecCCCCcEEEEEecCCe-EEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE-----eCC
Q 020480          127 EVNRARYMPQNPFLIATKTVSAE-VYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG-----SDD  200 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~-----s~d  200 (325)
                      ....++.+|.....++.+..-|+ ..+||..+......  ....+-+.|.+|      -.|+++|. +|++.     ...
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~--~~a~~gRHFyGH------g~fs~dG~-~LytTEnd~~~g~   76 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQR--LWAPPGRHFYGH------GVFSPDGR-LLYTTENDYETGR   76 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeE--EcCCCCCEEecC------EEEcCCCC-EEEEeccccCCCc
Confidence            34567788866678888888774 56788876111000  000111233344      46999999 56664     345


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe-----------------cCCcEEEEEccCCCCC
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-----------------DDQYLLIWDLRTPSVS  263 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~-----------------~dg~i~iwd~~~~~~~  263 (325)
                      |.|-|||....-     ..+..+..|.-.-..+.+.|+++.+++.-+                 .+.++.+-|.++++. 
T Consensus        77 G~IgVyd~~~~~-----~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l-  150 (305)
T PF07433_consen   77 GVIGVYDAARGY-----RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL-  150 (305)
T ss_pred             EEEEEEECcCCc-----EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce-
Confidence            889999998321     446667777767778889998854443322                 233455556666652 


Q ss_pred             CCeeE--e--eccCCCeeEEEeCCCCCc
Q 020480          264 KPVQS--V--VAHQSEVGVSILNASFRL  287 (325)
Q Consensus       264 ~~~~~--~--~~h~~~v~~i~~~p~~~~  287 (325)
                        +..  +  .-|.-.|..++++++|.+
T Consensus       151 --l~q~~Lp~~~~~lSiRHLa~~~~G~V  176 (305)
T PF07433_consen  151 --LEQVELPPDLHQLSIRHLAVDGDGTV  176 (305)
T ss_pred             --eeeeecCccccccceeeEEecCCCcE
Confidence              333  3  336678999999998875

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.23  E-value=0.026  Score=54.88  Aligned_cols=101  Identities=17%  Similarity=0.243  Sum_probs=70.1

Q ss_pred             cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCccc
Q 020480          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE  218 (325)
Q Consensus       139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  218 (325)
                      ..++.|+..|.|-..|....         ..+...=..-.++|++++|+.+|. .++.|-.+|.|.+||+..+      +
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~n---------L~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~------k  163 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGN---------LGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRA------K  163 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcc---------cchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCC------c
Confidence            47889999999999888761         222222223457999999999999 8999999999999999986      3


Q ss_pred             ceEeeecCCccEE---EEEeecCCCcEEEEEecCCcEEEEEcc
Q 020480          219 AMQIFKVHEGVVE---DVAWHLRHEYLFGSVGDDQYLLIWDLR  258 (325)
Q Consensus       219 ~~~~~~~~~~~v~---~v~~~p~~~~~l~s~~~dg~i~iwd~~  258 (325)
                      .++.+..|..+..   .+-+...+ ..+.++...|.  +|.+-
T Consensus       164 ~l~~i~e~~ap~t~vi~v~~t~~n-S~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  164 ILKVITEHGAPVTGVIFVGRTSQN-SKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             ceeeeeecCCccceEEEEEEeCCC-cEEEEccCCCc--eEEEE
Confidence            4555555544433   33444444 46777777776  56554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.16  E-value=0.022  Score=45.82  Aligned_cols=106  Identities=16%  Similarity=0.180  Sum_probs=59.1

Q ss_pred             cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCce-EEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcc
Q 020480          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG-YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL  217 (325)
Q Consensus       139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  217 (325)
                      .-+++|+.+|.|.+|......       .....  +..-...| +.+.--..+. +..+++.||.|+.|++...+.    
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g-------~~~d~--~~s~~e~i~~~Ip~~~~~~-~~c~~~~dg~ir~~n~~p~k~----  136 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEG-------AHSDR--VCSGEESIDLGIPNGRDSS-LGCVGAQDGRIRACNIKPNKV----  136 (238)
T ss_pred             ceEEeecccceEEEecCCccc-------hHHHh--hhcccccceeccccccccc-eeEEeccCCceeeeccccCce----
Confidence            578999999999999987411       11000  11111112 2222222233 788999999999999987643    


Q ss_pred             cceEeeecCC-ccEEEEEeecCCCcEEEEE--ecCCcEEEEEccCCC
Q 020480          218 EAMQIFKVHE-GVVEDVAWHLRHEYLFGSV--GDDQYLLIWDLRTPS  261 (325)
Q Consensus       218 ~~~~~~~~~~-~~v~~v~~~p~~~~~l~s~--~~dg~i~iwd~~~~~  261 (325)
                        +-....|+ ..+.....+..+ .+++.+  |.|..++.|++....
T Consensus       137 --~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~~~  180 (238)
T KOG2444|consen  137 --LGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEKIK  180 (238)
T ss_pred             --eeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhhhh
Confidence              33333444 233333333333 355555  667777777766544

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.15  E-value=0.14  Score=45.85  Aligned_cols=132  Identities=11%  Similarity=-0.023  Sum_probs=77.0

Q ss_pred             cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCccc
Q 020480          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE  218 (325)
Q Consensus       139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  218 (325)
                      ..+.+++.+|.++.+|..+        +  +.+.... .. .......  .+. .++.++.+|.+..+|..+++.     
T Consensus       242 ~~vy~~~~~g~l~a~d~~t--------G--~~~W~~~-~~-~~~~p~~--~~~-~vyv~~~~G~l~~~d~~tG~~-----  301 (377)
T TIGR03300       242 GQVYAVSYQGRVAALDLRS--------G--RVLWKRD-AS-SYQGPAV--DDN-RLYVTDADGVVVALDRRSGSE-----  301 (377)
T ss_pred             CEEEEEEcCCEEEEEECCC--------C--cEEEeec-cC-CccCceE--eCC-EEEEECCCCeEEEEECCCCcE-----
Confidence            3566677899999999876        2  2222222 11 1111111  244 688888999999999987743     


Q ss_pred             ceEeeecCCc-cEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCe-eEEEeCCCCCccCCCCceEE
Q 020480          219 AMQIFKVHEG-VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV-GVSILNASFRLSHEDTCTCT  296 (325)
Q Consensus       219 ~~~~~~~~~~-~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v-~~i~~~p~~~~~~~~d~~~~  296 (325)
                       +........ .......  .+ ..+++++.+|.|+++|..+++.   +..+..+...+ .+.++..+..+.++.|+.+.
T Consensus       302 -~W~~~~~~~~~~ssp~i--~g-~~l~~~~~~G~l~~~d~~tG~~---~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~  374 (377)
T TIGR03300       302 -LWKNDELKYRQLTAPAV--VG-GYLVVGDFEGYLHWLSREDGSF---VARLKTDGSGIASPPVVVGDGLLVQTRDGDLY  374 (377)
T ss_pred             -EEccccccCCccccCEE--EC-CEEEEEeCCCEEEEEECCCCCE---EEEEEcCCCccccCCEEECCEEEEEeCCceEE
Confidence             222211111 1111122  23 4777899999999999998874   66666555433 33334444444677777665


Q ss_pred             e
Q 020480          297 H  297 (325)
Q Consensus       297 ~  297 (325)
                      .
T Consensus       375 ~  375 (377)
T TIGR03300       375 A  375 (377)
T ss_pred             E
Confidence            4

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.98  E-value=0.36  Score=34.46  Aligned_cols=82  Identities=15%  Similarity=0.117  Sum_probs=56.0

Q ss_pred             EecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCC
Q 020480          185 SWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK  264 (325)
Q Consensus       185 ~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  264 (325)
                      .|.-++.+.|+.|+.|..|++|+-..        .+..+.. ...|.+++-...  ..|+.+...|+|-+|+-...    
T Consensus         9 d~d~dg~~eLlvGs~D~~IRvf~~~e--------~~~Ei~e-~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~~R----   73 (111)
T PF14783_consen    9 DFDGDGENELLVGSDDFEIRVFKGDE--------IVAEITE-TDKVTSLCSLGG--GRFAYALANGTVGVYDRSQR----   73 (111)
T ss_pred             ecCCCCcceEEEecCCcEEEEEeCCc--------EEEEEec-ccceEEEEEcCC--CEEEEEecCCEEEEEeCcce----
Confidence            34556667899999999999998663        3555553 456777776654  57999999999999986332    


Q ss_pred             CeeEeeccCCCeeEEEeCC
Q 020480          265 PVQSVVAHQSEVGVSILNA  283 (325)
Q Consensus       265 ~~~~~~~h~~~v~~i~~~p  283 (325)
                       +..++. +..+.++++..
T Consensus        74 -lWRiKS-K~~~~~~~~~D   90 (111)
T PF14783_consen   74 -LWRIKS-KNQVTSMAFYD   90 (111)
T ss_pred             -eeeecc-CCCeEEEEEEc
Confidence             455543 33355555543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.96  E-value=0.1  Score=46.76  Aligned_cols=125  Identities=14%  Similarity=0.184  Sum_probs=75.5

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCC---C-C-----------------------------CCCCCCcEE
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP---P-L-----------------------------DGACSPDLR  173 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~---~-~-----------------------------~~~~~~~~~  173 (325)
                      .|+.+.|.+.. .-||+|...|.|.||.+.....-.   . .                             .....|..-
T Consensus         3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            57889999986 589999999999998764321110   0 0                             001122233


Q ss_pred             EecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeec------CCccEEEEEeec---CC----C
Q 020480          174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV------HEGVVEDVAWHL---RH----E  240 (325)
Q Consensus       174 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~~~v~~v~~~p---~~----~  240 (325)
                      +....++|++++.+.-  ++++.|..+|.+.|.|+|...-.    ....+..      ....++++.|..   .+    .
T Consensus        82 ~~~~~g~vtal~~S~i--GFvaigy~~G~l~viD~RGPavI----~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS  155 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDI--GFVAIGYESGSLVVIDLRGPAVI----YNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS  155 (395)
T ss_dssp             E---S-SEEEEEE-BT--SEEEEEETTSEEEEEETTTTEEE----EEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred             eeccCCcEeEEecCCC--cEEEEEecCCcEEEEECCCCeEE----eeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence            3445789999999744  38999999999999999875221    1111111      234677888863   11    1


Q ss_pred             cEEEEEecCCcEEEEEcc
Q 020480          241 YLFGSVGDDQYLLIWDLR  258 (325)
Q Consensus       241 ~~l~s~~~dg~i~iwd~~  258 (325)
                      -.+++|...|.+.+|.+.
T Consensus       156 i~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  156 ICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEEEEETTSEEEEEEEE
T ss_pred             eEEEEEeCCCCEEEEEEe
Confidence            467789999999999886

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.89  E-value=0.037  Score=32.89  Aligned_cols=31  Identities=16%  Similarity=0.453  Sum_probs=28.0

Q ss_pred             CCceEEEEecCCCCCeEEEEeCCCcEEEEeCC
Q 020480          178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDIN  209 (325)
Q Consensus       178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~  209 (325)
                      ...|..++|+|... ++|.|+.+|.|.++.+.
T Consensus        11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence            35689999999998 99999999999999984

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.85  E-value=0.35  Score=44.53  Aligned_cols=127  Identities=17%  Similarity=0.183  Sum_probs=75.8

Q ss_pred             EeccCCCeeEEEecCCC----CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC---C--ceEEEEecCCCC
Q 020480          121 QINHDGEVNRARYMPQN----PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS---T--EGYGLSWSKFKE  191 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~----~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~---~--~v~~l~~~p~~~  191 (325)
                      .++.-..|..+.|.|-+    +.+||+ .....|.||.+-....+     ..+.+.....+-   -  --.++.|+|...
T Consensus        52 viGqFEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e-----~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~  125 (671)
T PF15390_consen   52 VIGQFEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTE-----RNKLLMSQTCEIREPFPVLPQGCVWHPKKA  125 (671)
T ss_pred             EeeccceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccc-----cccceeeeeeeccCCcccCCCcccccCCCc
Confidence            34444567888999853    456776 56679999998632111     111121111111   1  124678999988


Q ss_pred             CeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480          192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (325)
Q Consensus       192 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~  259 (325)
                       .|+.-.....--+++++....     .+..--...+.|.|.+|.++|.+++++.+..-.-++||-..
T Consensus       126 -iL~VLT~~dvSV~~sV~~d~s-----rVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  126 -ILTVLTARDVSVLPSVHCDSS-----RVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             -eEEEEecCceeEeeeeeeCCc-----eEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence             666555444444566654432     22222234577999999999987777777766677888654

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.83  E-value=0.77  Score=37.99  Aligned_cols=113  Identities=14%  Similarity=0.094  Sum_probs=70.4

Q ss_pred             cCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCC
Q 020480          134 MPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK  213 (325)
Q Consensus       134 ~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~  213 (325)
                      .++...+++.|+..+.+.--|..+        +... .....+-.-+...+.   -+. +++.|...|.+++-+.+++..
T Consensus        19 ~~dskT~v~igSHs~~~~avd~~s--------G~~~-We~ilg~RiE~sa~v---vgd-fVV~GCy~g~lYfl~~~tGs~   85 (354)
T KOG4649|consen   19 CNDSKTLVVIGSHSGIVIAVDPQS--------GNLI-WEAILGVRIECSAIV---VGD-FVVLGCYSGGLYFLCVKTGSQ   85 (354)
T ss_pred             ecCCceEEEEecCCceEEEecCCC--------CcEE-eehhhCceeeeeeEE---ECC-EEEEEEccCcEEEEEecchhh
Confidence            344446888888888888888766        2211 001111111112222   245 799999999999999999854


Q ss_pred             CCcccceEeeecCCc-cEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee
Q 020480          214 NKSLEAMQIFKVHEG-VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV  270 (325)
Q Consensus       214 ~~~~~~~~~~~~~~~-~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  270 (325)
                            ...+..-.. .+. ....+++ .++..|+.|+..+..|.++..+   +...+
T Consensus        86 ------~w~f~~~~~vk~~-a~~d~~~-glIycgshd~~~yalD~~~~~c---Vyksk  132 (354)
T KOG4649|consen   86 ------IWNFVILETVKVR-AQCDFDG-GLIYCGSHDGNFYALDPKTYGC---VYKSK  132 (354)
T ss_pred             ------eeeeeehhhhccc-eEEcCCC-ceEEEecCCCcEEEecccccce---EEecc
Confidence                  333332221 222 2335565 5889999999999999999875   55544

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.70  E-value=1  Score=37.57  Aligned_cols=150  Identities=12%  Similarity=0.122  Sum_probs=81.6

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-CCceEEEEecCCCCCeEEEEeCCC
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-STEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      +-...+..+.|+|+...++|+....+.|..++...           +.+.++.-. .+-.-+|++..++. ++++.-.++
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-----------~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~   86 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-----------KVLRRIPLDGFGDYEGITYLGNGR-YVLSEERDQ   86 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-------------EEEEEE-SS-SSEEEEEE-STTE-EEEEETTTT
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-----------CEEEEEeCCCCCCceeEEEECCCE-EEEEEcCCC
Confidence            34556999999998768999999999998888754           334443311 24467888876665 555555689


Q ss_pred             cEEEEeCCCCCCCCcccceEee-----ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe--e----
Q 020480          202 QICLWDINAAPKNKSLEAMQIF-----KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--V----  270 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~----  270 (325)
                      .+.++++......-.......+     ..++..+-.++|+|.+..++ .+-...-.++|.++.......+...  .    
T Consensus        87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~  165 (248)
T PF06977_consen   87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD  165 (248)
T ss_dssp             EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-SS--EEEE-HHHH-
T ss_pred             cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCccceeecccccccc
Confidence            9999998544322111111111     23556789999999875555 4556666778877751100012211  1    


Q ss_pred             --ccCCCeeEEEeCCCC
Q 020480          271 --AHQSEVGVSILNASF  285 (325)
Q Consensus       271 --~h~~~v~~i~~~p~~  285 (325)
                        .....+.+++++|..
T Consensus       166 ~~~~~~d~S~l~~~p~t  182 (248)
T PF06977_consen  166 DKLFVRDLSGLSYDPRT  182 (248)
T ss_dssp             HT--SS---EEEEETTT
T ss_pred             ccceeccccceEEcCCC
Confidence              133467889999854

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=95.62  E-value=0.4  Score=45.00  Aligned_cols=100  Identities=10%  Similarity=-0.029  Sum_probs=60.1

Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC-----CCC----eeEee
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-----SKP----VQSVV  270 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~----~~~~~  270 (325)
                      ++.|.+.|.++.....  ..+..+-.-......+.++|+|..+++++..+.++.|.|+...+.     .++    +....
T Consensus       295 gn~V~VID~~t~~~~~--~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve  372 (635)
T PRK02888        295 GSKVPVVDGRKAANAG--SALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE  372 (635)
T ss_pred             CCEEEEEECCccccCC--cceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence            3557777776510000  012222233456778999999988888888999999999988552     001    12222


Q ss_pred             ccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          271 AHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       271 ~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      - ...-...+|+++|..  +--.|..+.-|++..
T Consensus       373 v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        373 L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             c-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            1 223345789888874  444566777777654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.58  E-value=0.44  Score=46.31  Aligned_cols=101  Identities=11%  Similarity=0.053  Sum_probs=66.8

Q ss_pred             EEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE-EE--ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCc
Q 020480          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-RL--RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKS  216 (325)
Q Consensus       140 ~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~-~~--~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~  216 (325)
                      ....|-.+..+..||.+-..        .+.+. ..  -......++++-..+|  .||.|+.+|.||+||- .+.    
T Consensus       544 ~tflGls~n~lfriDpR~~~--------~k~v~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~----  608 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSG--------NKLVDSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGK----  608 (794)
T ss_pred             ceEEEECCCceEEeccCCCC--------CceeeccccccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cch----
Confidence            45566678889999998621        11111 01  0123445666666554  6999999999999994 332    


Q ss_pred             ccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEcc
Q 020480          217 LEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR  258 (325)
Q Consensus       217 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~  258 (325)
                       .....+.+-..+|..|..+.+|..+||||  +..|-+++..
T Consensus       609 -~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~  647 (794)
T PF08553_consen  609 -RAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDTL  647 (794)
T ss_pred             -hhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence             23445667788999999999996555554  5678888763

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.56  E-value=0.23  Score=45.04  Aligned_cols=113  Identities=8%  Similarity=-0.094  Sum_probs=69.4

Q ss_pred             eEEEEecCCCCC------eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecC----CccEEEEEeecCCCcEEEEEecCC
Q 020480          181 GYGLSWSKFKEG------HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH----EGVVEDVAWHLRHEYLFGSVGDDQ  250 (325)
Q Consensus       181 v~~l~~~p~~~~------~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~v~~v~~~p~~~~~l~s~~~dg  250 (325)
                      |.-+.+.|+...      .-+.|-.|..|.-||.|.....    .+...++|    .....|.+-.  +..++|+||.+|
T Consensus       378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~----kl~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~G  451 (644)
T KOG2395|consen  378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN----KLAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKG  451 (644)
T ss_pred             cceeeccCCcchhcccccccEEeecCCceEEecccccCcc----eeeeeeccccccccccceeeec--CCceEEEeecCC
Confidence            555566665421      1234556788999999855331    11111222    1234444444  345899999999


Q ss_pred             cEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc-cCCCCceEEeeecce
Q 020480          251 YLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL-SHEDTCTCTHRHSRY  302 (325)
Q Consensus       251 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~~~  302 (325)
                      .||+||--..+   .-..+.+...+|..|..+.+|++ .|..+..+.+-+++.
T Consensus       452 dIRLYdri~~~---AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~~  501 (644)
T KOG2395|consen  452 DIRLYDRIGRR---AKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTLI  501 (644)
T ss_pred             cEEeehhhhhh---hhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEec
Confidence            99999983333   23455778899999999999995 444455555544433

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.49  E-value=0.94  Score=40.62  Aligned_cols=141  Identities=13%  Similarity=0.030  Sum_probs=90.1

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe--CCCcEE
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS--DDAQIC  204 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s--~dg~i~  204 (325)
                      .-..+..++.+.+.++....+..|.+.|...          ........ -......++++|++....++-.  .++++.
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~----------~~~~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vs  143 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTAT----------NTVLGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVS  143 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcc----------cceeeEee-eccCCceEEECCCCCEEEEEecccCCceEE
Confidence            3456788888866777777788999999655          12122221 1225678999999985555555  368888


Q ss_pred             EEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCC-Cee-EeeccCCCeeEEEeC
Q 020480          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK-PVQ-SVVAHQSEVGVSILN  282 (325)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~-~~~~h~~~v~~i~~~  282 (325)
                      +.|..+..      .......-..+ ..+++.|++...+++-..++.|.++|........ ... ... -...-..+.++
T Consensus       144 vid~~t~~------~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~  215 (381)
T COG3391         144 VIDAATNK------VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVD  215 (381)
T ss_pred             EEeCCCCe------EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEEC
Confidence            88887763      23332222223 7899999987677777789999999977665210 000 111 12234568899


Q ss_pred             CCCC
Q 020480          283 ASFR  286 (325)
Q Consensus       283 p~~~  286 (325)
                      |+|.
T Consensus       216 ~~g~  219 (381)
T COG3391         216 PDGN  219 (381)
T ss_pred             CCCC
Confidence            9887

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.37  E-value=0.91  Score=41.43  Aligned_cols=128  Identities=13%  Similarity=0.166  Sum_probs=69.6

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      ...-....+.++|.| +.+++ +.+|.-.+|....          ...  ..   .+....+.|.+.+  .+|+-...+.
T Consensus        30 ~~~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~----------~r~--k~---~G~g~~~vw~~~n--~yAv~~~~~~   90 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALA----------WRN--KA---FGSGLSFVWSSRN--RYAVLESSST   90 (443)
T ss_dssp             E-SS--SEEEE-TTS-SEEEE-EETTEEEEEETTT----------TEE--EE---EEE-SEEEE-TSS--EEEEE-TTS-
T ss_pred             CCCcCCeeEEECCCC-CEEEE-EcCCEEEEEEccC----------Ccc--cc---cCceeEEEEecCc--cEEEEECCCe
Confidence            345567899999988 56666 5688899998443          111  11   2455688999843  5888888899


Q ss_pred             EEEE-eCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEe
Q 020480          203 ICLW-DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL  281 (325)
Q Consensus       203 i~iw-d~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~  281 (325)
                      |.|+ ++....       ...+.. ...+..+-.   | .+|+..+. +.|.+||..+++.   +..+...  +|..|.|
T Consensus        91 I~I~kn~~~~~-------~k~i~~-~~~~~~If~---G-~LL~~~~~-~~i~~yDw~~~~~---i~~i~v~--~vk~V~W  152 (443)
T PF04053_consen   91 IKIYKNFKNEV-------VKSIKL-PFSVEKIFG---G-NLLGVKSS-DFICFYDWETGKL---IRRIDVS--AVKYVIW  152 (443)
T ss_dssp             EEEEETTEE-T-------T------SS-EEEEE----S-SSEEEEET-TEEEEE-TTT--E---EEEESS---E-EEEEE
T ss_pred             EEEEEcCcccc-------ceEEcC-CcccceEEc---C-cEEEEECC-CCEEEEEhhHcce---eeEEecC--CCcEEEE
Confidence            9996 443221       111111 112333332   5 45555544 4899999999883   7776532  4899999


Q ss_pred             CCCCCc
Q 020480          282 NASFRL  287 (325)
Q Consensus       282 ~p~~~~  287 (325)
                      +++|.+
T Consensus       153 s~~g~~  158 (443)
T PF04053_consen  153 SDDGEL  158 (443)
T ss_dssp             -TTSSE
T ss_pred             ECCCCE
Confidence            999885

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.99  E-value=0.5  Score=42.96  Aligned_cols=120  Identities=14%  Similarity=0.168  Sum_probs=74.2

Q ss_pred             cCCCeeEEEecCCCC------cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC--CceEEEEecCCCCCeEE
Q 020480          124 HDGEVNRARYMPQNP------FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS--TEGYGLSWSKFKEGHLL  195 (325)
Q Consensus       124 h~~~v~~v~~~~~~~------~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~p~~~~~l~  195 (325)
                      ....|+-+.+.|+..      ..-+.|-.+..|.-||.+-+        ....+...++|.  ..-..-++...+.+.++
T Consensus       374 ~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~--------~~~kl~~~q~kqy~~k~nFsc~aTT~sG~Iv  445 (644)
T KOG2395|consen  374 FEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ--------GKNKLAVVQSKQYSTKNNFSCFATTESGYIV  445 (644)
T ss_pred             ccCCcceeeccCCcchhcccccccEEeecCCceEEeccccc--------CcceeeeeeccccccccccceeeecCCceEE
Confidence            334477777777541      12234567778888998852        111222233332  11112233334556899


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (325)
Q Consensus       196 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~  259 (325)
                      .||.+|.|++||- .+..     ....+.+-..+|..|..+.+|..+|+|  .+.++.+-+++-
T Consensus       446 vgS~~GdIRLYdr-i~~~-----AKTAlPgLG~~I~hVdvtadGKwil~T--c~tyLlLi~t~~  501 (644)
T KOG2395|consen  446 VGSLKGDIRLYDR-IGRR-----AKTALPGLGDAIKHVDVTADGKWILAT--CKTYLLLIDTLI  501 (644)
T ss_pred             EeecCCcEEeehh-hhhh-----hhhcccccCCceeeEEeeccCcEEEEe--cccEEEEEEEec
Confidence            9999999999997 3322     344567778899999999988755544  467788887764

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.92  E-value=0.11  Score=30.05  Aligned_cols=32  Identities=16%  Similarity=0.087  Sum_probs=27.1

Q ss_pred             cEEEEEeecCCC--cEEEEEecCCcEEEEEccCC
Q 020480          229 VVEDVAWHLRHE--YLFGSVGDDQYLLIWDLRTP  260 (325)
Q Consensus       229 ~v~~v~~~p~~~--~~l~s~~~dg~i~iwd~~~~  260 (325)
                      .|.++.|+|...  .+|+.+-.-|.|.|+|+|+.
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            588999998654  58999999999999999963

It contains a characteristic DLL sequence motif.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.83  E-value=0.083  Score=51.61  Aligned_cols=98  Identities=15%  Similarity=0.223  Sum_probs=67.2

Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc
Q 020480          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH  272 (325)
Q Consensus       193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h  272 (325)
                      .++.|+..|.+...|....-     .+.+.-..-.++|.+++|+.+| .+++.|-.+|.|.+||+..++   +++.+..|
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL-----~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k---~l~~i~e~  171 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNL-----GPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAK---ILKVITEH  171 (1206)
T ss_pred             eEEEEcCchhhhhhhhhccc-----chhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCc---ceeeeeec
Confidence            68888989999999987642     2223333446789999999987 688899999999999999887   36777666


Q ss_pred             CCCeeEEEe----CCCCCccCCCCceEEeeec
Q 020480          273 QSEVGVSIL----NASFRLSHEDTCTCTHRHS  300 (325)
Q Consensus       273 ~~~v~~i~~----~p~~~~~~~~d~~~~~~~~  300 (325)
                      ..+.+.+-+    +.+..+.. .|..+.+|+.
T Consensus       172 ~ap~t~vi~v~~t~~nS~llt-~D~~Gsf~~l  202 (1206)
T KOG2079|consen  172 GAPVTGVIFVGRTSQNSKLLT-SDTGGSFWKL  202 (1206)
T ss_pred             CCccceEEEEEEeCCCcEEEE-ccCCCceEEE
Confidence            655554433    23332322 3444556654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=94.80  E-value=2  Score=36.34  Aligned_cols=135  Identities=16%  Similarity=0.064  Sum_probs=76.5

Q ss_pred             cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCccc
Q 020480          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE  218 (325)
Q Consensus       139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  218 (325)
                      +.|+.|+.+| +.+++...         ...+....  +...|..+...|.-+ .++.-+ |+.++++++..........
T Consensus         8 ~~L~vGt~~G-l~~~~~~~---------~~~~~~i~--~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~   73 (275)
T PF00780_consen    8 DRLLVGTEDG-LYVYDLSD---------PSKPTRIL--KLSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSA   73 (275)
T ss_pred             CEEEEEECCC-EEEEEecC---------CccceeEe--ecceEEEEEEecccC-EEEEEc-CCccEEEEchhhccccccc
Confidence            6888999999 89999832         11212222  233499999999877 555544 5999999987654321100


Q ss_pred             ceE--------eeecCCccEEEEE--eecCCCcEEEEEecCCcEEEEEccCCCC-C-CCeeEeeccCCCeeEEEeCCCCC
Q 020480          219 AMQ--------IFKVHEGVVEDVA--WHLRHEYLFGSVGDDQYLLIWDLRTPSV-S-KPVQSVVAHQSEVGVSILNASFR  286 (325)
Q Consensus       219 ~~~--------~~~~~~~~v~~v~--~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~-~~~~~~~~h~~~v~~i~~~p~~~  286 (325)
                      +..        ........+...+  -...+ ...+.+.....|.+|....... . +....+. -...+.+++|.++..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~~i  151 (275)
T PF00780_consen   74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGNKI  151 (275)
T ss_pred             cccccccccccccccccCCeeEEeecccccc-ceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCCEE
Confidence            000        0111223344444  11233 3344455556999999887521 1 2344443 357788889986544


Q ss_pred             ccC
Q 020480          287 LSH  289 (325)
Q Consensus       287 ~~~  289 (325)
                      ..+
T Consensus       152 ~v~  154 (275)
T PF00780_consen  152 CVG  154 (275)
T ss_pred             EEE
Confidence            333

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.63  E-value=1.2  Score=42.41  Aligned_cols=137  Identities=12%  Similarity=0.036  Sum_probs=71.9

Q ss_pred             CCeeEEEecCCCCcEEEEEe-----cCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480          126 GEVNRARYMPQNPFLIATKT-----VSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~-----~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      ..+...+++|+|....++..     .|+  .|.+++...         ...++  ..+.  ..+.-.|+|++. .+.+.+
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg---------~~~~l--t~g~--~~t~PsWspDG~-~lw~v~  415 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG---------VAVQV--LEGH--SLTRPSWSLDAD-AVWVVV  415 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC---------cceee--ecCC--CCCCceECCCCC-ceEEEe
Confidence            35778899999954444431     243  455555432         11211  2232  367889999977 455554


Q ss_pred             CC------------CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEc---cCCCC-
Q 020480          199 DD------------AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL---RTPSV-  262 (325)
Q Consensus       199 ~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~---~~~~~-  262 (325)
                      ..            +.+.+.+++.+..      ..   .....|..+.|+|+|.++.+..  +|.|.+--+   ..+.. 
T Consensus       416 dg~~~~~v~~~~~~gql~~~~vd~ge~------~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~  484 (591)
T PRK13616        416 DGNTVVRVIRDPATGQLARTPVDASAV------AS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYA  484 (591)
T ss_pred             cCcceEEEeccCCCceEEEEeccCchh------hh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCcee
Confidence            22            2233333333211      11   2345799999999996554444  466766322   22220 


Q ss_pred             CCCeeEe-eccCCCeeEEEeCCCCCc
Q 020480          263 SKPVQSV-VAHQSEVGVSILNASFRL  287 (325)
Q Consensus       263 ~~~~~~~-~~h~~~v~~i~~~p~~~~  287 (325)
                      ......+ ..-...+.++.|.+++.+
T Consensus       485 l~~~~~l~~~l~~~~~~l~W~~~~~L  510 (591)
T PRK13616        485 LTNPREVGPGLGDTAVSLDWRTGDSL  510 (591)
T ss_pred             ecccEEeecccCCccccceEecCCEE
Confidence            0011122 223344688999999876

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.60  E-value=2.6  Score=36.12  Aligned_cols=104  Identities=11%  Similarity=0.012  Sum_probs=61.8

Q ss_pred             cCCCceEEEEecCCCCCeEEEEeCCCc-------EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec
Q 020480          176 GHSTEGYGLSWSKFKEGHLLSGSDDAQ-------ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD  248 (325)
Q Consensus       176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~  248 (325)
                      -|.-.+..|++.+++. .++..-..|.       |-+++......... .+......-...+-+|++++++..+.+|+-.
T Consensus       160 ~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~-~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr  237 (305)
T PF07433_consen  160 LHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGALRLLP-APEEQWRRLNGYIGSIAADRDGRLIAVTSPR  237 (305)
T ss_pred             ccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCcceecc-CChHHHHhhCCceEEEEEeCCCCEEEEECCC
Confidence            3677889999999876 4444433321       23333222100000 0001112345678999999988667788889


Q ss_pred             CCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC
Q 020480          249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR  286 (325)
Q Consensus       249 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~  286 (325)
                      .+.+.+||..+++.   +...  .-..+..++-.+++-
T Consensus       238 Gg~~~~~d~~tg~~---~~~~--~l~D~cGva~~~~~f  270 (305)
T PF07433_consen  238 GGRVAVWDAATGRL---LGSV--PLPDACGVAPTDDGF  270 (305)
T ss_pred             CCEEEEEECCCCCE---eecc--ccCceeeeeecCCce
Confidence            99999999999883   3332  123466667766663

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.33  E-value=0.17  Score=29.19  Aligned_cols=32  Identities=22%  Similarity=0.300  Sum_probs=27.1

Q ss_pred             CCeeEEEecCCCC--cEEEEEecCCeEEEEeCCC
Q 020480          126 GEVNRARYMPQNP--FLIATKTVSAEVYVFDYSK  157 (325)
Q Consensus       126 ~~v~~v~~~~~~~--~~la~g~~dg~v~vwd~~~  157 (325)
                      ++|.+++|+|...  .+|+..-..|.|.|+|++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            5788999998654  6888888889999999984

It contains a characteristic DLL sequence motif.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.24  E-value=2.9  Score=35.13  Aligned_cols=143  Identities=12%  Similarity=0.053  Sum_probs=80.6

Q ss_pred             CeeEEEecCCCCcEEEEE--ecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480          127 EVNRARYMPQNPFLIATK--TVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g--~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  204 (325)
                      .+...+.++++..+.++.  .....+.++....           .....+.+  ..+..-.|++++. +.+....+...+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-----------~~~~~~~g--~~l~~PS~d~~g~-~W~v~~~~~~~~   90 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-----------PVRPVLTG--GSLTRPSWDPDGW-VWTVDDGSGGVR   90 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-----------cceeeccC--CccccccccCCCC-EEEEEcCCCceE
Confidence            677889999985444443  2334555555433           11111222  3677889999976 666666666666


Q ss_pred             EEe-CCCCCCCCcccceEe-eecCCccEEEEEeecCCCcEEEEE--ecCCcEEEEEccCCCCC------CCeeEeeccCC
Q 020480          205 LWD-INAAPKNKSLEAMQI-FKVHEGVVEDVAWHLRHEYLFGSV--GDDQYLLIWDLRTPSVS------KPVQSVVAHQS  274 (325)
Q Consensus       205 iwd-~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~l~s~--~~dg~i~iwd~~~~~~~------~~~~~~~~h~~  274 (325)
                      ++. ...+..    ..... ...-...|.+++++|+|.++.+..  ..++.|.+--+......      .++........
T Consensus        91 ~~~~~~~g~~----~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~  166 (253)
T PF10647_consen   91 VVRDSASGTG----EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS  166 (253)
T ss_pred             EEEecCCCcc----eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccC
Confidence            663 222221    11111 111112799999999997555544  24566777665432221      12222223356


Q ss_pred             CeeEEEeCCCCCc
Q 020480          275 EVGVSILNASFRL  287 (325)
Q Consensus       275 ~v~~i~~~p~~~~  287 (325)
                      .+.+++|.+++.+
T Consensus       167 ~v~~v~W~~~~~L  179 (253)
T PF10647_consen  167 DVTDVAWSDDSTL  179 (253)
T ss_pred             cceeeeecCCCEE
Confidence            8899999999886

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=94.16  E-value=2.3  Score=37.90  Aligned_cols=102  Identities=14%  Similarity=0.048  Sum_probs=60.0

Q ss_pred             cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCccc
Q 020480          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE  218 (325)
Q Consensus       139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  218 (325)
                      ..+.+++.+|.|..+|..+        +  +.+....-..........  ++. .++.++.+|.+..+|..+++.     
T Consensus        66 ~~v~v~~~~g~v~a~d~~t--------G--~~~W~~~~~~~~~~~p~v--~~~-~v~v~~~~g~l~ald~~tG~~-----  127 (377)
T TIGR03300        66 GKVYAADADGTVVALDAET--------G--KRLWRVDLDERLSGGVGA--DGG-LVFVGTEKGEVIALDAEDGKE-----  127 (377)
T ss_pred             CEEEEECCCCeEEEEEccC--------C--cEeeeecCCCCcccceEE--cCC-EEEEEcCCCEEEEEECCCCcE-----
Confidence            4677778889999999776        2  223332221111112222  244 688888999999999988754     


Q ss_pred             ceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC
Q 020480          219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV  262 (325)
Q Consensus       219 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  262 (325)
                       +...... ..+.+.... .+ ..++.++.+|.|..||.++++.
T Consensus       128 -~W~~~~~-~~~~~~p~v-~~-~~v~v~~~~g~l~a~d~~tG~~  167 (377)
T TIGR03300       128 -LWRAKLS-SEVLSPPLV-AN-GLVVVRTNDGRLTALDAATGER  167 (377)
T ss_pred             -eeeeccC-ceeecCCEE-EC-CEEEEECCCCeEEEEEcCCCce
Confidence             2222211 122211111 12 3566778899999999998874

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.01  E-value=4.2  Score=36.22  Aligned_cols=147  Identities=12%  Similarity=0.073  Sum_probs=73.7

Q ss_pred             CCeeEEEecCCCCcEEEEEe-----------cCC-eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCe
Q 020480          126 GEVNRARYMPQNPFLIATKT-----------VSA-EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~-----------~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  193 (325)
                      .....|+|.++| +++++-.           ..+ .|.+++-...      ++.......+.........+++.+++  +
T Consensus        14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dg------dG~~d~~~vfa~~l~~p~Gi~~~~~G--l   84 (367)
T TIGR02604        14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADG------DGKYDKSNVFAEELSMVTGLAVAVGG--V   84 (367)
T ss_pred             CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCC------CCCcceeEEeecCCCCccceeEecCC--E
Confidence            455678999988 5665532           223 6777764431      12222233343334456889998876  4


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCC-ccc-ceEeeec----CCccEEEEEeecCCCcEEEEEecC------------------
Q 020480          194 LLSGSDDAQICLWDINAAPKNK-SLE-AMQIFKV----HEGVVEDVAWHLRHEYLFGSVGDD------------------  249 (325)
Q Consensus       194 l~s~s~dg~i~iwd~~~~~~~~-~~~-~~~~~~~----~~~~v~~v~~~p~~~~~l~s~~~d------------------  249 (325)
                      +++ +.....++.|........ ... .+..+..    +......++|.|+|. +.++-+..                  
T Consensus        85 yV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~  162 (367)
T TIGR02604        85 YVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGL  162 (367)
T ss_pred             EEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCccccc
Confidence            444 444433444554321110 001 1222222    124477899999984 54444321                  


Q ss_pred             -CcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc
Q 020480          250 -QYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL  287 (325)
Q Consensus       250 -g~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~  287 (325)
                       |.|.-+|....+    +..+..--.-.+.++|+|+|.+
T Consensus       163 ~g~i~r~~pdg~~----~e~~a~G~rnp~Gl~~d~~G~l  197 (367)
T TIGR02604       163 GGGLFRYNPDGGK----LRVVAHGFQNPYGHSVDSWGDV  197 (367)
T ss_pred             CceEEEEecCCCe----EEEEecCcCCCccceECCCCCE
Confidence             334444443333    2222211233568999999986

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.98  E-value=0.12  Score=41.73  Aligned_cols=105  Identities=12%  Similarity=0.040  Sum_probs=64.4

Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc
Q 020480          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH  272 (325)
Q Consensus       193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h  272 (325)
                      .++.|+.+|.|.+|....-..     ....+......|.++--.-+...+..+++.||.||.|++.-.+.   +-....|
T Consensus        72 ~~~vG~~dg~v~~~n~n~~g~-----~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~---~g~~g~h  143 (238)
T KOG2444|consen   72 KLMVGTSDGAVYVFNWNLEGA-----HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV---LGYVGQH  143 (238)
T ss_pred             eEEeecccceEEEecCCccch-----HHHhhhcccccceeccccccccceeEEeccCCceeeeccccCce---eeeeccc
Confidence            699999999999998873211     01111111122322221222224888999999999999987774   5555556


Q ss_pred             C-CCeeEEEeCCCCCc--cC--CCCceEEeeecceeee
Q 020480          273 Q-SEVGVSILNASFRL--SH--EDTCTCTHRHSRYLLY  305 (325)
Q Consensus       273 ~-~~v~~i~~~p~~~~--~~--~~d~~~~~~~~~~~~~  305 (325)
                      . .++.....+..+++  ++  |.+..++.|++..+.-
T Consensus       144 ~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d  181 (238)
T KOG2444|consen  144 NFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKD  181 (238)
T ss_pred             cCCCcceeEEecCCceEEeeccccchhhhhcchhhhhc
Confidence            6 55555555555553  33  6777888888766543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=93.97  E-value=1.9  Score=37.25  Aligned_cols=101  Identities=11%  Similarity=0.100  Sum_probs=60.5

Q ss_pred             cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCC--CCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC-cE
Q 020480          176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINA--APKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ-YL  252 (325)
Q Consensus       176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg-~i  252 (325)
                      .+-..-..|+|+|++..++++=+..+.|.-|++..  +..... .....+....+..-.++...+| ++.+++...| .|
T Consensus       160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~-~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v  237 (307)
T COG3386         160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR-RGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRV  237 (307)
T ss_pred             CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc-ceEEEccCCCCCCCceEEeCCC-CEEEecccCCceE
Confidence            33444568999999985555556668899998863  111110 1112222233445556666666 5664444443 89


Q ss_pred             EEEEccCCCCCCCeeEeeccCCCeeEEEeC
Q 020480          253 LIWDLRTPSVSKPVQSVVAHQSEVGVSILN  282 (325)
Q Consensus       253 ~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~  282 (325)
                      ..|+.. ++   .+..+.-....+++++|-
T Consensus       238 ~~~~pd-G~---l~~~i~lP~~~~t~~~Fg  263 (307)
T COG3386         238 VRFNPD-GK---LLGEIKLPVKRPTNPAFG  263 (307)
T ss_pred             EEECCC-Cc---EEEEEECCCCCCccceEe
Confidence            999988 55   366665554677888885

>PRK02888 nitrous-oxide reductase; Validated

Probab=93.96  E-value=2.8  Score=39.65  Aligned_cols=81  Identities=10%  Similarity=0.076  Sum_probs=57.1

Q ss_pred             CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCC--Ccccc----eEeeecCCccEEEEEeecCCCcEEEEEecCC
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN--KSLEA----MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ  250 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~----~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg  250 (325)
                      -....+.+.++|++...++++..+.+|.|.|+......  ..+.+    ..... -...-...+|.++| +.+.|-.-|.
T Consensus       319 VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve-vGlGPLHTaFDg~G-~aytslf~ds  396 (635)
T PRK02888        319 VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE-LGLGPLHTAFDGRG-NAYTTLFLDS  396 (635)
T ss_pred             CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec-cCCCcceEEECCCC-CEEEeEeecc
Confidence            34566889999999977777888999999999875421  00011    11111 12344567898887 6888888999


Q ss_pred             cEEEEEccC
Q 020480          251 YLLIWDLRT  259 (325)
Q Consensus       251 ~i~iwd~~~  259 (325)
                      .|..||+..
T Consensus       397 qv~kwn~~~  405 (635)
T PRK02888        397 QIVKWNIEA  405 (635)
T ss_pred             eeEEEehHH
Confidence            999999876

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=93.89  E-value=1.3  Score=36.98  Aligned_cols=153  Identities=14%  Similarity=0.179  Sum_probs=79.1

Q ss_pred             CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-----cCCCceEEEEecCCCCCeEEEEeC
Q 020480          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-----GHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      -+..-.|++...+ .++++--.++.+.++++........    ......+.     .+...+-.++|+|.+. .|+.+-.
T Consensus        64 ~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~~~~~~----~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE  137 (248)
T PF06977_consen   64 FGDYEGITYLGNG-RYVLSEERDQRLYIFTIDDDTTSLD----RADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKE  137 (248)
T ss_dssp             -SSEEEEEE-STT-EEEEEETTTTEEEEEEE----TT------EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEE
T ss_pred             CCCceeEEEECCC-EEEEEEcCCCcEEEEEEeccccccc----hhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeC
Confidence            4667788888766 4555544588999998854211100    00011121     2445689999999988 5666677


Q ss_pred             CCcEEEEeCCCCCCCCcccc-----eEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe--ec-
Q 020480          200 DAQICLWDINAAPKNKSLEA-----MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VA-  271 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~-  271 (325)
                      .....+|.++.......+..     ..........+.+++++|...++++-...+..|..+| +.++   ++..+  .. 
T Consensus       138 ~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~---~~~~~~L~~g  213 (248)
T PF06977_consen  138 RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGR---VVSSLSLDRG  213 (248)
T ss_dssp             SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT-----EEEEEE-STT
T ss_pred             CCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCC---EEEEEEeCCc
Confidence            77777777765111100000     0001123346889999998778888989999999999 4554   23333  21 


Q ss_pred             -cC-----CCeeEEEeCCCCCc
Q 020480          272 -HQ-----SEVGVSILNASFRL  287 (325)
Q Consensus       272 -h~-----~~v~~i~~~p~~~~  287 (325)
                       |.     ...-.|+|.++|.+
T Consensus       214 ~~gl~~~~~QpEGIa~d~~G~L  235 (248)
T PF06977_consen  214 FHGLSKDIPQPEGIAFDPDGNL  235 (248)
T ss_dssp             GGG-SS---SEEEEEE-TT--E
T ss_pred             ccCcccccCCccEEEECCCCCE
Confidence             11     24567999999875

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.85  E-value=1  Score=42.70  Aligned_cols=113  Identities=16%  Similarity=0.204  Sum_probs=67.7

Q ss_pred             ceEEEEecCCCCCeEEEEe-CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEee--cCCCcEEEEEecCCcEEEEE
Q 020480          180 EGYGLSWSKFKEGHLLSGS-DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWH--LRHEYLFGSVGDDQYLLIWD  256 (325)
Q Consensus       180 ~v~~l~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~s~~~dg~i~iwd  256 (325)
                      ...-+.-+..+.  ++... ....+.|||.+.+..    .....+ .....|.++.|.  |+++ .+++.|-...|.++-
T Consensus        31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~l----E~~~~f-~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~  102 (631)
T PF12234_consen   31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVL----EYEESF-SEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYT  102 (631)
T ss_pred             CcceEeecccCc--EEEEECCCCEEEEEEcCCcEE----EEeeee-cCCCceeeceeeecCCCC-EEEEEEcCcEEEEEE
Confidence            344444444443  44434 345699999987631    222233 346789999985  5664 555666677787775


Q ss_pred             cc------CCCCCCCeeEe--eccC-CCeeEEEeCCCCCccCCCCceEEeeec
Q 020480          257 LR------TPSVSKPVQSV--VAHQ-SEVGVSILNASFRLSHEDTCTCTHRHS  300 (325)
Q Consensus       257 ~~------~~~~~~~~~~~--~~h~-~~v~~i~~~p~~~~~~~~d~~~~~~~~  300 (325)
                      -.      ......++..+  ..|+ .+|.+..|-++|.+..+......+++.
T Consensus       103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk  155 (631)
T PF12234_consen  103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK  155 (631)
T ss_pred             ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence            42      11222344444  3343 589999999999986555666666543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=93.76  E-value=1  Score=40.40  Aligned_cols=115  Identities=13%  Similarity=0.123  Sum_probs=68.4

Q ss_pred             ceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCC-------------------------------------CcccceEe
Q 020480          180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-------------------------------------KSLEAMQI  222 (325)
Q Consensus       180 ~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~-------------------------------------~~~~~~~~  222 (325)
                      .|+.+.|++... -|+.|...|.|-||.....+..                                     ..+.+...
T Consensus         3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            478888988877 7999999999888864332111                                     01123333


Q ss_pred             eecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe--ec------cCCCeeEEEeCC-----CCC---
Q 020480          223 FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VA------HQSEVGVSILNA-----SFR---  286 (325)
Q Consensus       223 ~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~------h~~~v~~i~~~p-----~~~---  286 (325)
                      +....+.|++++.+.-|  ++|.|..+|.+.|.|+|....   +..-  ..      ..+.|+++.|..     ++.   
T Consensus        82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPav---I~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi  156 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAV---IYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI  156 (395)
T ss_dssp             E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEE---EEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred             eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeE---EeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence            44557899999998654  899999999999999998763   3331  11      234688888873     221   


Q ss_pred             --ccCCCCceEEeeec
Q 020480          287 --LSHEDTCTCTHRHS  300 (325)
Q Consensus       287 --~~~~~d~~~~~~~~  300 (325)
                        +.|...|.+..+.+
T Consensus       157 ~L~vGTn~G~v~~fkI  172 (395)
T PF08596_consen  157 CLLVGTNSGNVLTFKI  172 (395)
T ss_dssp             EEEEEETTSEEEEEEE
T ss_pred             EEEEEeCCCCEEEEEE
Confidence              24445566665544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=93.66  E-value=0.72  Score=37.95  Aligned_cols=110  Identities=12%  Similarity=0.041  Sum_probs=63.8

Q ss_pred             cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCccc
Q 020480          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE  218 (325)
Q Consensus       139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  218 (325)
                      ..+++++.++.|..||..+        +  +.+..+.. ...+.... ...+. .++.++.++.+..+|..++..     
T Consensus        37 ~~v~~~~~~~~l~~~d~~t--------G--~~~W~~~~-~~~~~~~~-~~~~~-~v~v~~~~~~l~~~d~~tG~~-----   98 (238)
T PF13360_consen   37 GRVYVASGDGNLYALDAKT--------G--KVLWRFDL-PGPISGAP-VVDGG-RVYVGTSDGSLYALDAKTGKV-----   98 (238)
T ss_dssp             TEEEEEETTSEEEEEETTT--------S--EEEEEEEC-SSCGGSGE-EEETT-EEEEEETTSEEEEEETTTSCE-----
T ss_pred             CEEEEEcCCCEEEEEECCC--------C--CEEEEeec-ccccccee-eeccc-ccccccceeeeEecccCCcce-----
Confidence            3566668999999999876        2  33444432 11111111 11233 577777888999999888853     


Q ss_pred             ceEee-ecCC---ccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeec
Q 020480          219 AMQIF-KVHE---GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA  271 (325)
Q Consensus       219 ~~~~~-~~~~---~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  271 (325)
                       +... ....   ...........+ ..++.+..++.|..+|+++++.   +.....
T Consensus        99 -~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~---~w~~~~  150 (238)
T PF13360_consen   99 -LWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKL---LWKYPV  150 (238)
T ss_dssp             -EEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSEEEEEETTTTEE---EEEEES
T ss_pred             -eeeeccccccccccccccCceEec-CEEEEEeccCcEEEEecCCCcE---EEEeec
Confidence             3331 2110   111112222224 4677788899999999999883   555544

...

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.63  E-value=2.8  Score=38.95  Aligned_cols=120  Identities=11%  Similarity=0.184  Sum_probs=69.9

Q ss_pred             cCCCceEEEEecCCC----CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecC---Cc--cEEEEEeecCCCcEEEEE
Q 020480          176 GHSTEGYGLSWSKFK----EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH---EG--VVEDVAWHLRHEYLFGSV  246 (325)
Q Consensus       176 ~h~~~v~~l~~~p~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~--~v~~v~~~p~~~~~l~s~  246 (325)
                      |.-..|+++.|.|-+    + .+++......|.||.+........ +.+.....+   .-  --..+.|||... +|+.=
T Consensus        54 GqFEhV~GlsW~P~~~~~~p-aLLAVQHkkhVtVWqL~~s~~e~~-K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VL  130 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTP-ALLAVQHKKHVTVWQLCPSTTERN-KLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVL  130 (671)
T ss_pred             eccceeeeeeecCcccCCCC-ceEEEeccceEEEEEeccCccccc-cceeeeeeeccCCcccCCCcccccCCCc-eEEEE
Confidence            334568999999963    4 466677788999999873321100 111111111   11  124567999864 66555


Q ss_pred             ecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc---cCCCCceEEeeec
Q 020480          247 GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL---SHEDTCTCTHRHS  300 (325)
Q Consensus       247 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~  300 (325)
                      .....-.+++++....  .+..--...+.|.|.+|.++|..   ..|..-...+||-
T Consensus       131 T~~dvSV~~sV~~d~s--rVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  131 TARDVSVLPSVHCDSS--RVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             ecCceeEeeeeeeCCc--eEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            5555555777776653  23332234678999999999983   2233344555653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.53  E-value=0.93  Score=41.35  Aligned_cols=130  Identities=13%  Similarity=0.134  Sum_probs=63.4

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEE-eCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVF-DYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vw-d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  204 (325)
                      +......|.+.+  .+|+-...+.|.++ ++..           .....+... ..+..+-.   |. +|...+. +.|.
T Consensus        69 G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~-----------~~~k~i~~~-~~~~~If~---G~-LL~~~~~-~~i~  129 (443)
T PF04053_consen   69 GSGLSFVWSSRN--RYAVLESSSTIKIYKNFKN-----------EVVKSIKLP-FSVEKIFG---GN-LLGVKSS-DFIC  129 (443)
T ss_dssp             EE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE------------TT-----S-S-EEEEE----SS-SEEEEET-TEEE
T ss_pred             CceeEEEEecCc--cEEEEECCCeEEEEEcCcc-----------ccceEEcCC-cccceEEc---Cc-EEEEECC-CCEE
Confidence            455667888854  68887778899996 4432           111222211 12333322   55 5555554 4899


Q ss_pred             EEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCC--------CCCCCeeEeeccCCCe
Q 020480          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP--------SVSKPVQSVVAHQSEV  276 (325)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~h~~~v  276 (325)
                      +||..++      ..++.+..  ..|..+.|++++ .++|-.+. ..+.|++....        .....+..+......|
T Consensus       130 ~yDw~~~------~~i~~i~v--~~vk~V~Ws~~g-~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~I  199 (443)
T PF04053_consen  130 FYDWETG------KLIRRIDV--SAVKYVIWSDDG-ELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERI  199 (443)
T ss_dssp             EE-TTT--------EEEEESS---E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--
T ss_pred             EEEhhHc------ceeeEEec--CCCcEEEEECCC-CEEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEeccee
Confidence            9999987      34555543  248999999987 56666654 46777665443        0000133333335677


Q ss_pred             eEEEeCCC
Q 020480          277 GVSILNAS  284 (325)
Q Consensus       277 ~~i~~~p~  284 (325)
                      .+.+|..+
T Consensus       200 kSg~W~~d  207 (443)
T PF04053_consen  200 KSGCWVED  207 (443)
T ss_dssp             SEEEEETT
T ss_pred             EEEEEEcC
Confidence            77788765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=93.14  E-value=6.2  Score=35.40  Aligned_cols=145  Identities=10%  Similarity=0.033  Sum_probs=89.2

Q ss_pred             CeeEEEecCCCCcEEEEEe--cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480          127 EVNRARYMPQNPFLIATKT--VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  204 (325)
                      .-..+++.+++..+.++-.  .++.+.+.|..+          .........-..+ ..+++.|++...+++-..++.|.
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t----------~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~  185 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT----------NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVS  185 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCC----------CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEE
Confidence            5667899998865655555  367888888776          2333333322234 89999999995555555889999


Q ss_pred             EEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC--CcEEEEEccCCCCCCCeeE-eeccCCCeeEEEe
Q 020480          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD--QYLLIWDLRTPSVSKPVQS-VVAHQSEVGVSIL  281 (325)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~-~~~h~~~v~~i~~  281 (325)
                      +.|........ ...... ..-...-..+.++|++....++...+  +.+...|..+...   ... ...-+.....+.+
T Consensus       186 vi~~~~~~v~~-~~~~~~-~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v---~~~~~~~~~~~~~~v~~  260 (381)
T COG3391         186 VIDTSGNSVVR-GSVGSL-VGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV---TATDLPVGSGAPRGVAV  260 (381)
T ss_pred             EEeCCCcceec-cccccc-cccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE---EEeccccccCCCCceeE
Confidence            99976542210 000001 11223345688899987566666555  6888888888763   222 1111114566788


Q ss_pred             CCCCCc
Q 020480          282 NASFRL  287 (325)
Q Consensus       282 ~p~~~~  287 (325)
                      +|.|..
T Consensus       261 ~p~g~~  266 (381)
T COG3391         261 DPAGKA  266 (381)
T ss_pred             CCCCCE
Confidence            898884

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=93.12  E-value=4.8  Score=36.49  Aligned_cols=48  Identities=15%  Similarity=0.258  Sum_probs=36.3

Q ss_pred             eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCC
Q 020480          149 EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDIN  209 (325)
Q Consensus       149 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~  209 (325)
                      .|++|+...           .++.++.--.+.+.++.|..+.  .|+....||.++++|+.
T Consensus        62 ~I~iys~sG-----------~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   62 SIQIYSSSG-----------KLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEEECCCC-----------CEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCC
Confidence            599999876           3344443233789999998864  47778899999999985

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.82  E-value=0.066  Score=51.39  Aligned_cols=147  Identities=16%  Similarity=0.203  Sum_probs=82.7

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE---EecCCCceEEEEecCCC--CCeEEEE
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR---LRGHSTEGYGLSWSKFK--EGHLLSG  197 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~~p~~--~~~l~s~  197 (325)
                      +.+|.|-.+.|-......++  ..-|.+.||++....      +...+...   .......+.-+.|.|--  .-.+..+
T Consensus       130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~------G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~  201 (1283)
T KOG1916|consen  130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQ------GEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYG  201 (1283)
T ss_pred             cCCCCcccccccccCChHHH--HHhhhhheeehHhhc------cccccceEEeecCcCCCCcceeeecccccccceeeec
Confidence            46677777777653322222  345788899987522      22222211   12233444566676632  1245556


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEE-----------eecCCCcEEEEEecCCcEEEEEccCCCC--CC
Q 020480          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVA-----------WHLRHEYLFGSVGDDQYLLIWDLRTPSV--SK  264 (325)
Q Consensus       198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~-----------~~p~~~~~l~s~~~dg~i~iwd~~~~~~--~~  264 (325)
                      -.++.+++-......       ...+.+|...+..++           .+|+| ..||.++.||.+++|.+.-...  .+
T Consensus       202 ~~~~~i~lL~~~ra~-------~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qiyi~g~~~~r  273 (1283)
T KOG1916|consen  202 LKGGEIRLLNINRAL-------RSLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQIYITGKIVHR  273 (1283)
T ss_pred             cCCCceeEeeechHH-------HHHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeeeeeeccccHh
Confidence            677888887766532       123444655544443           57887 7999999999999998763221  12


Q ss_pred             CeeEeeccC-CCeeEEEeCCCC
Q 020480          265 PVQSVVAHQ-SEVGVSILNASF  285 (325)
Q Consensus       265 ~~~~~~~h~-~~v~~i~~~p~~  285 (325)
                      .++..+.|. .+-.|.-|+.+.
T Consensus       274 clhewkphd~~p~vC~lc~~~~  295 (1283)
T KOG1916|consen  274 CLHEWKPHDKHPRVCWLCHKQE  295 (1283)
T ss_pred             hhhccCCCCCCCceeeeecccc
Confidence            345556676 444444455443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.59  E-value=4.9  Score=34.69  Aligned_cols=155  Identities=12%  Similarity=0.039  Sum_probs=70.3

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      -.+.+..+.-+++| .+++++..-....-|+.-.        ....+.  -......|..+.|.|++. +.+ ....|.|
T Consensus       143 ~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~--------~~w~~~--~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~  209 (302)
T PF14870_consen  143 TSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQ--------TTWQPH--NRNSSRRIQSMGFSPDGN-LWM-LARGGQI  209 (302)
T ss_dssp             ----EEEEEE-TTS--EEEEETTSSEEEEE-TT---------SS-EEE--E--SSS-EEEEEE-TTS--EEE-EETTTEE
T ss_pred             CcceeEeEEECCCC-cEEEEECcccEEEEecCCC--------ccceEE--ccCccceehhceecCCCC-EEE-EeCCcEE
Confidence            44678888888888 6777765544445676543        112222  223457899999999977 544 4488888


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCC
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNA  283 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p  283 (325)
                      +.=+.......+. .++.......-.+.+++|.+.+ .+.|+|+ .|.+ +.....++.++.......-.+-+..|.|.+
T Consensus       210 ~~s~~~~~~~~w~-~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~  285 (302)
T PF14870_consen  210 QFSDDPDDGETWS-EPIIPIKTNGYGILDLAYRPPN-EIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVN  285 (302)
T ss_dssp             EEEE-TTEEEEE----B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEE
T ss_pred             EEccCCCCccccc-cccCCcccCceeeEEEEecCCC-CEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcC
Confidence            8877221110000 0111111223358899999875 4665555 4543 334444553211221122344577888865


Q ss_pred             CCC-ccCCCCceE
Q 020480          284 SFR-LSHEDTCTC  295 (325)
Q Consensus       284 ~~~-~~~~~d~~~  295 (325)
                      ..+ +.-+.++.+
T Consensus       286 ~~~gf~lG~~G~l  298 (302)
T PF14870_consen  286 PDKGFVLGQDGVL  298 (302)
T ss_dssp             TTEEEEE-STTEE
T ss_pred             CCceEEECCCcEE
Confidence            433 344455543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=92.58  E-value=1.7  Score=35.72  Aligned_cols=98  Identities=12%  Similarity=0.000  Sum_probs=55.6

Q ss_pred             CCeEEEEeCCCCCCCCCCCCCCCCcEEEecC--CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeee
Q 020480          147 SAEVYVFDYSKHPSKPPLDGACSPDLRLRGH--STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK  224 (325)
Q Consensus       147 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~  224 (325)
                      +|.|..+|..+          .+.+....--  ......... +.+. .+++++.++.+..||..+++.      +..+.
T Consensus         2 ~g~l~~~d~~t----------G~~~W~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~l~~~d~~tG~~------~W~~~   63 (238)
T PF13360_consen    2 DGTLSALDPRT----------GKELWSYDLGPGIGGPVATAV-PDGG-RVYVASGDGNLYALDAKTGKV------LWRFD   63 (238)
T ss_dssp             TSEEEEEETTT----------TEEEEEEECSSSCSSEEETEE-EETT-EEEEEETTSEEEEEETTTSEE------EEEEE
T ss_pred             CCEEEEEECCC----------CCEEEEEECCCCCCCccceEE-EeCC-EEEEEcCCCEEEEEECCCCCE------EEEee
Confidence            57888888865          2223333211  111121122 2344 678888999999999988843      43333


Q ss_pred             cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeE
Q 020480          225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS  268 (325)
Q Consensus       225 ~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  268 (325)
                      . ...+...... .+ ..++.++.++.++.+|.++++.   +..
T Consensus        64 ~-~~~~~~~~~~-~~-~~v~v~~~~~~l~~~d~~tG~~---~W~  101 (238)
T PF13360_consen   64 L-PGPISGAPVV-DG-GRVYVGTSDGSLYALDAKTGKV---LWS  101 (238)
T ss_dssp             C-SSCGGSGEEE-ET-TEEEEEETTSEEEEEETTTSCE---EEE
T ss_pred             c-cccccceeee-cc-cccccccceeeeEecccCCcce---eee
Confidence            2 1111111112 23 3556667888999999999884   555

...

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.55  E-value=11  Score=36.80  Aligned_cols=83  Identities=16%  Similarity=0.171  Sum_probs=52.5

Q ss_pred             CceEEEEecCCCCCeEEEEeCCCcEEEEeCCC-CCCC------CcccceEe------e-ecCCccEEEEEeecCC--CcE
Q 020480          179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINA-APKN------KSLEAMQI------F-KVHEGVVEDVAWHLRH--EYL  242 (325)
Q Consensus       179 ~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~-~~~~------~~~~~~~~------~-~~~~~~v~~v~~~p~~--~~~  242 (325)
                      -.|..+..+|.|. +++..+..|.+-+.=.+. +..+      ..+.|...      + ..+...|..+.|||.+  ...
T Consensus        85 f~v~~i~~n~~g~-~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGS-LLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCC-EEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            4688999999999 677777655443332221 1110      11111111      1 1334678999999964  367


Q ss_pred             EEEEecCCcEEEEEccCCCC
Q 020480          243 FGSVGDDQYLLIWDLRTPSV  262 (325)
Q Consensus       243 l~s~~~dg~i~iwd~~~~~~  262 (325)
                      |+.=..|+++|+||+.....
T Consensus       164 l~vLtsdn~lR~y~~~~~~~  183 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQH  183 (717)
T ss_pred             EEEEecCCEEEEEecCCCCC
Confidence            77888999999999976553

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.45  E-value=3.4  Score=34.34  Aligned_cols=62  Identities=13%  Similarity=0.032  Sum_probs=43.4

Q ss_pred             cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCC
Q 020480          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAA  211 (325)
Q Consensus       139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~  211 (325)
                      ++++.|+..|.+++.+..+        +.  ....+..-..--......+++. ++..|+.|+..+.-|.++.
T Consensus        64 dfVV~GCy~g~lYfl~~~t--------Gs--~~w~f~~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~  125 (354)
T KOG4649|consen   64 DFVVLGCYSGGLYFLCVKT--------GS--QIWNFVILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTY  125 (354)
T ss_pred             CEEEEEEccCcEEEEEecc--------hh--heeeeeehhhhccceEEcCCCc-eEEEecCCCcEEEeccccc
Confidence            5799999999999999987        32  2333332211112233455666 8999999999999999876

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.11  E-value=7.4  Score=37.11  Aligned_cols=119  Identities=13%  Similarity=0.150  Sum_probs=67.3

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEe--cCCCCCeEEEEeCCCcEE
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSW--SKFKEGHLLSGSDDAQIC  204 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~p~~~~~l~s~s~dg~i~  204 (325)
                      ...-+.-+.-+ +.-++-+....+.|||...        +...-...+ ...+.|.+++|  .|+++ .+++.+..+.|.
T Consensus        31 ~~~li~gss~~-k~a~V~~~~~~LtIWD~~~--------~~lE~~~~f-~~~~~I~dLDWtst~d~q-siLaVGf~~~v~   99 (631)
T PF12234_consen   31 NPSLISGSSIK-KIAVVDSSRSELTIWDTRS--------GVLEYEESF-SEDDPIRDLDWTSTPDGQ-SILAVGFPHHVL   99 (631)
T ss_pred             CcceEeecccC-cEEEEECCCCEEEEEEcCC--------cEEEEeeee-cCCCceeeceeeecCCCC-EEEEEEcCcEEE
Confidence            33444444444 2333333345899999987        222222233 34678999999  45677 677778888888


Q ss_pred             EEeCCCCC---CCCcccceEee--ecCC-ccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480          205 LWDINAAP---KNKSLEAMQIF--KVHE-GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (325)
Q Consensus       205 iwd~~~~~---~~~~~~~~~~~--~~~~-~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~  259 (325)
                      ++--....   ......+++.+  ..++ .+|.+..|.++| .++ .|+ +..+.|+|-.-
T Consensus       100 l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~Lv-V~s-GNqlfv~dk~~  157 (631)
T PF12234_consen  100 LYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLV-VGS-GNQLFVFDKWL  157 (631)
T ss_pred             EEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC-eEE-EEe-CCEEEEECCCc
Confidence            88542110   11111223332  3333 578899999987 333 333 45678887543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=92.09  E-value=3.8  Score=35.46  Aligned_cols=114  Identities=9%  Similarity=0.047  Sum_probs=65.1

Q ss_pred             CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC-cE
Q 020480          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA-QI  203 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg-~i  203 (325)
                      -..-+.|+|+|++..++++=+..+.|+-|++.......   ........+....+..=.++...+|. +.+++...| .|
T Consensus       162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~---~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v  237 (307)
T COG3386         162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPI---GGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRV  237 (307)
T ss_pred             EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCcc---CCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceE
Confidence            34557899999997666665666888888876310000   01111122222345555677777777 554444444 89


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEee-cCCCcEEEEEecC
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWH-LRHEYLFGSVGDD  249 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~-p~~~~~l~s~~~d  249 (325)
                      .+|+.. +      ..+..+.-....+.+++|- |+...+++++...
T Consensus       238 ~~~~pd-G------~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         238 VRFNPD-G------KLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             EEECCC-C------cEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence            999988 4      2344444444566777774 3333455555443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=91.56  E-value=5.1  Score=36.03  Aligned_cols=131  Identities=7%  Similarity=-0.040  Sum_probs=70.2

Q ss_pred             EEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccc
Q 020480          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA  219 (325)
Q Consensus       140 ~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  219 (325)
                      .+.+++.+|.+..+|..+        +  +.+.+..  ......+..  .+. .++.++.+|.+..+|..++...+    
T Consensus       258 ~vy~~~~~g~l~ald~~t--------G--~~~W~~~--~~~~~~~~~--~~~-~vy~~~~~g~l~ald~~tG~~~W----  318 (394)
T PRK11138        258 VVYALAYNGNLVALDLRS--------G--QIVWKRE--YGSVNDFAV--DGG-RIYLVDQNDRVYALDTRGGVELW----  318 (394)
T ss_pred             EEEEEEcCCeEEEEECCC--------C--CEEEeec--CCCccCcEE--ECC-EEEEEcCCCeEEEEECCCCcEEE----
Confidence            455567788888888876        2  1122211  111111222  234 67788889999999998774321    


Q ss_pred             eEeeecCC-ccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee-EEEeCCCCCc-cCCCCceEE
Q 020480          220 MQIFKVHE-GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG-VSILNASFRL-SHEDTCTCT  296 (325)
Q Consensus       220 ~~~~~~~~-~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~-~i~~~p~~~~-~~~~d~~~~  296 (325)
                        ....-. ....+....  + ..++.++.+|.|++.|..+++.   +...+.....+. +..+. ++++ .++.++.+.
T Consensus       319 --~~~~~~~~~~~sp~v~--~-g~l~v~~~~G~l~~ld~~tG~~---~~~~~~~~~~~~s~P~~~-~~~l~v~t~~G~l~  389 (394)
T PRK11138        319 --SQSDLLHRLLTAPVLY--N-GYLVVGDSEGYLHWINREDGRF---VAQQKVDSSGFLSEPVVA-DDKLLIQARDGTVY  389 (394)
T ss_pred             --cccccCCCcccCCEEE--C-CEEEEEeCCCEEEEEECCCCCE---EEEEEcCCCcceeCCEEE-CCEEEEEeCCceEE
Confidence              111100 111111122  3 3677889999999999999873   555443322232 12222 3343 566666555


Q ss_pred             ee
Q 020480          297 HR  298 (325)
Q Consensus       297 ~~  298 (325)
                      ..
T Consensus       390 ~~  391 (394)
T PRK11138        390 AI  391 (394)
T ss_pred             EE
Confidence            43

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.51  E-value=7.8  Score=32.81  Aligned_cols=103  Identities=16%  Similarity=0.129  Sum_probs=67.9

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeE-EEEeCCCCCCCCCCCCCCCCc-------EEEecCCCceEEEEecCCCCCe
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEV-YVFDYSKHPSKPPLDGACSPD-------LRLRGHSTEGYGLSWSKFKEGH  193 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v-~vwd~~~~~~~~~~~~~~~~~-------~~~~~h~~~v~~l~~~p~~~~~  193 (325)
                      ..-+.....+.|+|.-+.-++.+..-|+- .++|...        . ..++       +.+-+|      =.|+|+|. +
T Consensus        64 ~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~--------~-~~pv~~~s~~~RHfyGH------Gvfs~dG~-~  127 (366)
T COG3490          64 TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNG--------A-QEPVTLVSQEGRHFYGH------GVFSPDGR-L  127 (366)
T ss_pred             eecccccCCeecCCCCcceEEEEecCCceEEEECCCC--------C-cCcEEEecccCceeecc------cccCCCCc-E
Confidence            34445556788999877788888887764 6788875        1 1222       122233      25899998 5


Q ss_pred             EEEEeC-----CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEE
Q 020480          194 LLSGSD-----DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV  246 (325)
Q Consensus       194 l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~  246 (325)
                      |...-.     -|.|-|||.+.+-     ..+-.+..|.-.-..+.|.++|. .++.+
T Consensus       128 LYATEndfd~~rGViGvYd~r~~f-----qrvgE~~t~GiGpHev~lm~DGr-tlvva  179 (366)
T COG3490         128 LYATENDFDPNRGVIGVYDAREGF-----QRVGEFSTHGIGPHEVTLMADGR-TLVVA  179 (366)
T ss_pred             EEeecCCCCCCCceEEEEeccccc-----ceecccccCCcCcceeEEecCCc-EEEEe
Confidence            555432     3789999998542     34556777877888899999985 54443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.40  E-value=5.3  Score=38.51  Aligned_cols=129  Identities=9%  Similarity=0.037  Sum_probs=79.6

Q ss_pred             cCCCeeEEEecCC-CCcEEEEEecCCeEEEEeCCCCC-------CCC---CCCCCCCCcEEEecCCCceEEEEec--CCC
Q 020480          124 HDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHP-------SKP---PLDGACSPDLRLRGHSTEGYGLSWS--KFK  190 (325)
Q Consensus       124 h~~~v~~v~~~~~-~~~~la~g~~dg~v~vwd~~~~~-------~~~---~~~~~~~~~~~~~~h~~~v~~l~~~--p~~  190 (325)
                      .+..|+.|....- +...|+.|..||.|.+|.+..-.       ...   ......+|-..+. ....+++++++  ...
T Consensus        99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~  177 (717)
T PF08728_consen   99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS  177 (717)
T ss_pred             CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc
Confidence            3345666665543 33688899999999999663210       000   0001223444444 23478999998  666


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCC--Cc---EEEEEecCCcEEEEEc
Q 020480          191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH--EY---LFGSVGDDQYLLIWDL  257 (325)
Q Consensus       191 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~--~~---~l~s~~~dg~i~iwd~  257 (325)
                      + ++|.++....|.||-+........   ...-..+...|-+|+|-++.  +.   .+++++-.|.+-+|++
T Consensus       178 r-lIAVSsNs~~VTVFaf~l~~~r~~---~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  178 R-LIAVSSNSQEVTVFAFALVDERFY---HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             e-EEEEecCCceEEEEEEeccccccc---cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            6 888888888899887665321110   11011255568888887643  22   7778899999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=91.26  E-value=7.3  Score=32.00  Aligned_cols=100  Identities=11%  Similarity=0.087  Sum_probs=62.8

Q ss_pred             eEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC---C-CceEEEEecCCCCCeEEEEeCCCcEE
Q 020480          129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH---S-TEGYGLSWSKFKEGHLLSGSDDAQIC  204 (325)
Q Consensus       129 ~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h---~-~~v~~l~~~p~~~~~l~s~s~dg~i~  204 (325)
                      +.++|..+...+..+-+.+-.|.-||...+.....   ..+.+..++..   . ...-.++....|. +++++-..++|.
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~s---nr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~  236 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLS---NRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQ  236 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCccccc---CcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEE
Confidence            56788877666777777888888888554221110   11222222211   1 1112344455666 788888889999


Q ss_pred             EEeCCCCCCCCcccceEeeecCCccEEEEEeecC
Q 020480          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR  238 (325)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  238 (325)
                      ..|..+++      .+..+.-....|+++||--.
T Consensus       237 ~~dp~tGK------~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  237 KVDPTTGK------ILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             EECCCCCc------EEEEEEcCCCceEEEEecCC
Confidence            99999884      46666666888999999643

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.21  E-value=11  Score=34.05  Aligned_cols=115  Identities=18%  Similarity=0.226  Sum_probs=65.6

Q ss_pred             eEEEecCCCCcEEEEE-ecCC----eEEEEeCCCCCCCCCCCCCCCCcE-EEecCCCceEEEEecCCCCCeEEEEeCC--
Q 020480          129 NRARYMPQNPFLIATK-TVSA----EVYVFDYSKHPSKPPLDGACSPDL-RLRGHSTEGYGLSWSKFKEGHLLSGSDD--  200 (325)
Q Consensus       129 ~~v~~~~~~~~~la~g-~~dg----~v~vwd~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~~l~s~s~d--  200 (325)
                      ....++|++ +++|.+ +..|    .++++|+.+        +  +.+. .+..  .....+.|.+++..++.+...+  
T Consensus       127 ~~~~~Spdg-~~la~~~s~~G~e~~~l~v~Dl~t--------g--~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~  193 (414)
T PF02897_consen  127 GGFSVSPDG-KRLAYSLSDGGSEWYTLRVFDLET--------G--KFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQ  193 (414)
T ss_dssp             EEEEETTTS-SEEEEEEEETTSSEEEEEEEETTT--------T--EEEEEEEEE--EESEEEEECTTSSEEEEEECSTTT
T ss_pred             eeeeECCCC-CEEEEEecCCCCceEEEEEEECCC--------C--cCcCCcccc--cccceEEEeCCCCEEEEEEeCccc
Confidence            357889999 455543 4444    599999987        2  1121 1111  1123499999988555555333  


Q ss_pred             --------CcEEEEeCCCCCCCCcccceEeeecCCcc--EEEEEeecCCCcEEEEEecCCc---EEEEEccCC
Q 020480          201 --------AQICLWDINAAPKNKSLEAMQIFKVHEGV--VEDVAWHLRHEYLFGSVGDDQY---LLIWDLRTP  260 (325)
Q Consensus       201 --------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~--v~~v~~~p~~~~~l~s~~~dg~---i~iwd~~~~  260 (325)
                              ..|+.|.+.+...    .....+......  ...+..++++..+++......+   +.+.|+...
T Consensus       194 ~~~~~~~~~~v~~~~~gt~~~----~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  194 RTSDSGYPRQVYRHKLGTPQS----EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             SS-CCGCCEEEEEEETTS-GG----G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             ccccCCCCcEEEEEECCCChH----hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence                    2377788776533    212334433322  5678889988666665554444   777777764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=91.20  E-value=3.1  Score=32.59  Aligned_cols=31  Identities=13%  Similarity=0.192  Sum_probs=25.6

Q ss_pred             ceEEEEecCCC-----CCeEEEEeCCCcEEEEeCCC
Q 020480          180 EGYGLSWSKFK-----EGHLLSGSDDAQICLWDINA  210 (325)
Q Consensus       180 ~v~~l~~~p~~-----~~~l~s~s~dg~i~iwd~~~  210 (325)
                      .+.+++|+|.|     .-+|++.+.+|.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            78899999964     34788999999999998664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.14  E-value=10  Score=34.27  Aligned_cols=172  Identities=13%  Similarity=0.061  Sum_probs=99.6

Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCC
Q 020480          130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDIN  209 (325)
Q Consensus       130 ~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~  209 (325)
                      .+-|...+..++|  ...|.+.=|-+....+       -.|+.--....++|.++.|++++. .++.--.+.+|.+++..
T Consensus        27 gvFfDDaNkqlfa--vrSggatgvvvkgpnd-------DVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~   96 (657)
T KOG2377|consen   27 GVFFDDANKQLFA--VRSGGATGVVVKGPND-------DVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFI   96 (657)
T ss_pred             ceeeccCcceEEE--EecCCeeEEEEeCCCC-------CCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecC
Confidence            3444444422333  3455566666654211       122222224557999999999998 89999999999999985


Q ss_pred             CCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--
Q 020480          210 AAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--  287 (325)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--  287 (325)
                      ......  ...+..+..+..|...+|..+  .-+|--+..| +-+|.....+.  .+...+.|...|+-..|+++..+  
T Consensus        97 ~d~~~l--~~~~~ck~k~~~IlGF~W~~s--~e~A~i~~~G-~e~y~v~pekr--slRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen   97 PDNSQL--EYTQECKTKNANILGFCWTSS--TEIAFITDQG-IEFYQVLPEKR--SLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             CCchhh--HHHHHhccCcceeEEEEEecC--eeEEEEecCC-eEEEEEchhhh--hhhhhhhcccCccEEEEccccceEe
Confidence            442210  112223334556888899864  3455544443 66776655443  46666778888999999998774  


Q ss_pred             cC-C-CCceEEeeecce-eeeccCeeEEEeecCC
Q 020480          288 SH-E-DTCTCTHRHSRY-LLYKFPFFVLVFPLFP  318 (325)
Q Consensus       288 ~~-~-~d~~~~~~~~~~-~~~~~~~~~~~~~~~~  318 (325)
                      .+ + ...+..-..++. ...+.|...+..|-.|
T Consensus       170 L~t~~~~n~lnpf~~~~~~v~kLPkfe~~~p~~~  203 (657)
T KOG2377|consen  170 LSTTVLENVLNPFHFRAGTMSKLPKFEIELPAAP  203 (657)
T ss_pred             eeccccccccccEEEeeceeeeccceeecCCCCc
Confidence            22 2 111111122222 3456777777766553

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=90.85  E-value=4.9  Score=36.30  Aligned_cols=83  Identities=13%  Similarity=0.109  Sum_probs=53.1

Q ss_pred             EEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEE-EEee-c-------------
Q 020480          173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED-VAWH-L-------------  237 (325)
Q Consensus       173 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~-v~~~-p-------------  237 (325)
                      .+......+.++..+|.+. +.++...-|.|.++|+..+.      .++.+++....=.. +.-. .             
T Consensus       302 ~l~D~~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~------vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~  374 (415)
T PF14655_consen  302 GLPDSKREGESICLSPSGR-LAAVTDSLGRVLLIDVARGI------VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKS  374 (415)
T ss_pred             eeccCCceEEEEEECCCCC-EEEEEcCCCcEEEEECCCCh------hhhhhccCccceEEEEEeecccccccccccccCC
Confidence            3445566789999999987 78887778999999998873      23334443221100 0000 0             


Q ss_pred             ---CCCcEEEEEecCCcEEEEEccCCCC
Q 020480          238 ---RHEYLFGSVGDDQYLLIWDLRTPSV  262 (325)
Q Consensus       238 ---~~~~~l~s~~~dg~i~iwd~~~~~~  262 (325)
                         ....+++-+..-|.|.||.++++..
T Consensus       375 ~~~~~l~LvIyaprRg~lEvW~~~~g~R  402 (415)
T PF14655_consen  375 SSRFALFLVIYAPRRGILEVWSMRQGPR  402 (415)
T ss_pred             CCcceEEEEEEeccCCeEEEEecCCCCE
Confidence               0112445566789999999998874

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=90.67  E-value=0.18  Score=48.56  Aligned_cols=125  Identities=14%  Similarity=0.114  Sum_probs=72.9

Q ss_pred             cCCCeeEEEecCC--CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEE-----------ecCCC
Q 020480          124 HDGEVNRARYMPQ--NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLS-----------WSKFK  190 (325)
Q Consensus       124 h~~~v~~v~~~~~--~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-----------~~p~~  190 (325)
                      ....+.-|.|+|-  +.-++..+-.++.|++......           ....+.+|...+.+++           .+|+|
T Consensus       179 ~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra-----------~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG  247 (1283)
T KOG1916|consen  179 YGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA-----------LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDG  247 (1283)
T ss_pred             CCCCcceeeecccccccceeeeccCCCceeEeeechH-----------HHHHHHhcCCCcccHHHHhhchhhheeeCCCC
Confidence            4455677778773  2245667777889988777651           1123445766655543           58888


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCcc--EEEEEeecC-------CC-cEEEEEe-cCCcEEEEEccC
Q 020480          191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGV--VEDVAWHLR-------HE-YLFGSVG-DDQYLLIWDLRT  259 (325)
Q Consensus       191 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--v~~v~~~p~-------~~-~~l~s~~-~dg~i~iwd~~~  259 (325)
                      . .|+.++.||.++.|.+.-... ....|++.++.|...  |+.+ ++..       +. .++++++ ...-+++|....
T Consensus       248 t-v~a~a~~dG~v~f~Qiyi~g~-~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~  324 (1283)
T KOG1916|consen  248 T-VFAWAISDGSVGFYQIYITGK-IVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP  324 (1283)
T ss_pred             c-EEEEeecCCccceeeeeeecc-ccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccc
Confidence            8 899999999999887653321 112456666666532  2222 2211       01 2334444 345588888766


Q ss_pred             CCC
Q 020480          260 PSV  262 (325)
Q Consensus       260 ~~~  262 (325)
                      .+|
T Consensus       325 w~C  327 (1283)
T KOG1916|consen  325 WQC  327 (1283)
T ss_pred             hhh
Confidence            655

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.62  E-value=0.039  Score=49.32  Aligned_cols=144  Identities=15%  Similarity=0.170  Sum_probs=96.5

Q ss_pred             eEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeC
Q 020480          129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI  208 (325)
Q Consensus       129 ~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~  208 (325)
                      -...|-|.+.+ ++.++.+..|..||-..           +..... .-++....++|..++...++.+-..+.+.+||+
T Consensus        38 i~~~w~~e~~n-lavaca~tiv~~YD~ag-----------q~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~  104 (615)
T KOG2247|consen   38 IIHRWRPEGHN-LAVACANTIVIYYDKAG-----------QVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDV  104 (615)
T ss_pred             ceeeEecCCCc-eehhhhhhHHHhhhhhc-----------ceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechh
Confidence            34567777744 77778888899999765           111111 234566788999888866777888899999999


Q ss_pred             CCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc-
Q 020480          209 NAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL-  287 (325)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-  287 (325)
                      .+...    +.+..-..|....  +.|++.. ..++.+...|.+.|++.++.+.   +.....|...+.+++|.+.+.. 
T Consensus       105 n~eyt----qqLE~gg~~s~sl--l~wsKg~-~el~ig~~~gn~viynhgtsR~---iiv~Gkh~RRgtq~av~lEd~vi  174 (615)
T KOG2247|consen  105 NSEYT----QQLESGGTSSKSL--LAWSKGT-PELVIGNNAGNIVIYNHGTSRR---IIVMGKHQRRGTQIAVTLEDYVI  174 (615)
T ss_pred             hhhhH----HHHhccCcchHHH--HhhccCC-ccccccccccceEEEeccchhh---hhhhcccccceeEEEecccceee
Confidence            86421    0111111122222  6788865 4777888999999999998773   4444458899999999997763 


Q ss_pred             cCCCCceE
Q 020480          288 SHEDTCTC  295 (325)
Q Consensus       288 ~~~~d~~~  295 (325)
                      .++.|.++
T Consensus       175 l~dcd~~L  182 (615)
T KOG2247|consen  175 LCDCDNTL  182 (615)
T ss_pred             ecCcHHHH
Confidence            55555433

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.95  E-value=2.8  Score=41.96  Aligned_cols=105  Identities=9%  Similarity=-0.037  Sum_probs=64.6

Q ss_pred             CceEEEEecCCCCCe-EEEEeCCCcEEEEeCCCCCCCCcccceEeee------cCCccEEEEEeecCCCcEEEEEecCCc
Q 020480          179 TEGYGLSWSKFKEGH-LLSGSDDAQICLWDINAAPKNKSLEAMQIFK------VHEGVVEDVAWHLRHEYLFGSVGDDQY  251 (325)
Q Consensus       179 ~~v~~l~~~p~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~v~~~p~~~~~l~s~~~dg~  251 (325)
                      -++..+..+++.... ++..+.+-.|..||++.-....... ...+.      .......++.|+|.-+.-.|.+..|+.
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~-~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYET-TVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhh-ccccccccchhccccccccccccCCccchhhhhccccc
Confidence            345566666665422 2233344579999998754321100 11111      123446778999987667788899999


Q ss_pred             EEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc
Q 020480          252 LLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL  287 (325)
Q Consensus       252 i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~  287 (325)
                      |++..+.....  .+..+ ......++++|+|.|+-
T Consensus       180 l~V~~~~~~~~--~v~s~-p~t~~~Tav~WSprGKQ  212 (1405)
T KOG3630|consen  180 LRVKSTKQLAQ--NVTSF-PVTNSQTAVLWSPRGKQ  212 (1405)
T ss_pred             hhhhhhhhhhh--hhccc-CcccceeeEEeccccce
Confidence            99988775543  23332 34567899999999983

>PHA02713 hypothetical protein; Provisional

Probab=88.94  E-value=2.8  Score=39.69  Aligned_cols=63  Identities=5%  Similarity=-0.016  Sum_probs=32.7

Q ss_pred             cEEEEEecC------CcEEEEEccC-CCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCc--eEEeeecceeeec
Q 020480          241 YLFGSVGDD------QYLLIWDLRT-PSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTC--TCTHRHSRYLLYK  306 (325)
Q Consensus       241 ~~l~s~~~d------g~i~iwd~~~-~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~--~~~~~~~~~~~~~  306 (325)
                      .+.+.||.+      ..+..||..+ .+ +..+..+.........+++  +|++  .||.++  ++-.++...-.|.
T Consensus       465 ~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        465 DIYVVCDIKDEKNVKTCIFRYNTNTYNG-WELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             EEEEEeCCCCCCccceeEEEecCCCCCC-eeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence            567777754      2467899887 44 3333333322223333333  3443  677676  4444555555554

>PRK13616 lipoprotein LpqB; Provisional

Probab=88.83  E-value=19  Score=34.38  Aligned_cols=103  Identities=10%  Similarity=0.002  Sum_probs=52.9

Q ss_pred             CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCC-CcccceEeeec-CCccEEEEEeecCCCcEEEEEecCCcEEEE
Q 020480          178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDDQYLLIW  255 (325)
Q Consensus       178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~s~~~dg~i~iw  255 (325)
                      ...|..+.|+|+|. .++... +|.|.+=-+...... ..+.....+.. -...+.++.|..++. + +.+..++.-.+|
T Consensus       447 ~g~Issl~wSpDG~-RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L-~V~~~~~~~~v~  522 (591)
T PRK13616        447 PGPISELQLSRDGV-RAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS-L-VVGRSDPEHPVW  522 (591)
T ss_pred             CCCcCeEEECCCCC-EEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCE-E-EEEecCCCCceE
Confidence            45799999999999 455444 477766322221111 11111222222 233468899998763 4 455555555566


Q ss_pred             EccCCCCCCCeeEeeccCCCeeEEEeCCC
Q 020480          256 DLRTPSVSKPVQSVVAHQSEVGVSILNAS  284 (325)
Q Consensus       256 d~~~~~~~~~~~~~~~h~~~v~~i~~~p~  284 (325)
                      -+.-.........-.....++.+|+=++.
T Consensus       523 ~v~vDG~~~~~~~~~n~~~~v~~vaa~~~  551 (591)
T PRK13616        523 YVNLDGSNSDALPSRNLSAPVVAVAASPS  551 (591)
T ss_pred             EEecCCccccccCCCCccCceEEEecCCc
Confidence            55533221111011112456777777764

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=88.35  E-value=25  Score=34.43  Aligned_cols=87  Identities=21%  Similarity=0.259  Sum_probs=54.2

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCC-C-CCCCCCCCCCCc-EEE--------ecCCCceEEEEecCCC--
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKH-P-SKPPLDGACSPD-LRL--------RGHSTEGYGLSWSKFK--  190 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~-~-~~~~~~~~~~~~-~~~--------~~h~~~v~~l~~~p~~--  190 (325)
                      -.-.|..|.++|.| .++|..|..| |.|-.+... . .....++..... +++        ..+...|..+.|+|.+  
T Consensus        83 ~~f~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   83 PLFEVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES  160 (717)
T ss_pred             CceeEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence            34578999999999 6777777665 444444321 0 000000111111 111        1344678999999985  


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCC
Q 020480          191 EGHLLSGSDDAQICLWDINAAP  212 (325)
Q Consensus       191 ~~~l~s~s~dg~i~iwd~~~~~  212 (325)
                      ...|+.-..|+++|+||+....
T Consensus       161 ~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CCeEEEEecCCEEEEEecCCCC
Confidence            2378899999999999997654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.05  E-value=14  Score=33.46  Aligned_cols=125  Identities=14%  Similarity=0.232  Sum_probs=78.8

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ...-.|+|.+++|++++ +.+|+-..+..|.+++......      ......+.+..+..|.+..|.....  ++-.+..
T Consensus        62 dm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~------~l~~~~~ck~k~~~IlGF~W~~s~e--~A~i~~~  132 (657)
T KOG2377|consen   62 DMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNS------QLEYTQECKTKNANILGFCWTSSTE--IAFITDQ  132 (657)
T ss_pred             eecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCch------hhHHHHHhccCcceeEEEEEecCee--EEEEecC
Confidence            34556799999999998 7999999999999999854111      1111223334455689999987643  5555544


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe-cCCcEEEEEccCC
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DDQYLLIWDLRTP  260 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~-~dg~i~iwd~~~~  260 (325)
                      | +-+|.+....     ..++..+.|+..|+--.|+++..-.+.+.+ ..+++.=+.++++
T Consensus       133 G-~e~y~v~pek-----rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  133 G-IEFYQVLPEK-----RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             C-eEEEEEchhh-----hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            3 6667665433     235556677778888888886533333333 4445555555543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.98  E-value=6  Score=33.48  Aligned_cols=99  Identities=16%  Similarity=0.138  Sum_probs=65.2

Q ss_pred             eEEEEecCCCCCeEEEEeCCCc-EEEEeCCCCCCCCccc--ceEeeecCCccEEEEEeecCCCcEEEEEe----cCCcEE
Q 020480          181 GYGLSWSKFKEGHLLSGSDDAQ-ICLWDINAAPKNKSLE--AMQIFKVHEGVVEDVAWHLRHEYLFGSVG----DDQYLL  253 (325)
Q Consensus       181 v~~l~~~p~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~v~~~p~~~~~l~s~~----~dg~i~  253 (325)
                      .+.+.++|..+.-++.+-.-|+ ..++|.........+.  .-+.|.+|      -.|||+|..+.||-.    .-|.|-
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG~~LYATEndfd~~rGViG  143 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDGRLLYATENDFDPNRGVIG  143 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCCcEEEeecCCCCCCCceEE
Confidence            3467788877766777766665 5688888765421110  01223333      468999854444432    347899


Q ss_pred             EEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc
Q 020480          254 IWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL  287 (325)
Q Consensus       254 iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~  287 (325)
                      |||.+..-.  .+-.+..|.-....+.|.++|+.
T Consensus       144 vYd~r~~fq--rvgE~~t~GiGpHev~lm~DGrt  175 (366)
T COG3490         144 VYDAREGFQ--RVGEFSTHGIGPHEVTLMADGRT  175 (366)
T ss_pred             EEecccccc--eecccccCCcCcceeEEecCCcE
Confidence            999996543  56777788878888999999996

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=86.91  E-value=32  Score=33.49  Aligned_cols=92  Identities=9%  Similarity=0.033  Sum_probs=57.0

Q ss_pred             CeEEEEeCCCcEEEEeCCCC--------------CCCCcccceEeeecCCccEEEEEee--cCCCcEEEEEecCCcEEEE
Q 020480          192 GHLLSGSDDAQICLWDINAA--------------PKNKSLEAMQIFKVHEGVVEDVAWH--LRHEYLFGSVGDDQYLLIW  255 (325)
Q Consensus       192 ~~l~s~s~dg~i~iwd~~~~--------------~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~~l~s~~~dg~i~iw  255 (325)
                      ..|+.|..||.|.+|-++.-              .....+.|...+. -...++.++++  .. .++||+++....|.||
T Consensus       115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~-~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKK-SRLIAVSSNSQEVTVF  192 (717)
T ss_pred             eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCc-ceEEEEecCCceEEEE
Confidence            37899999999999965211              0001112333333 34578999998  54 4799999988889888


Q ss_pred             EccCCCCCCCeeEeeccCCCeeEEEeCCCC
Q 020480          256 DLRTPSVSKPVQSVVAHQSEVGVSILNASF  285 (325)
Q Consensus       256 d~~~~~~~~~~~~~~~h~~~v~~i~~~p~~  285 (325)
                      -............-..|..-|.+|+|-++.
T Consensus       193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~  222 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQHSHNIPNVSFLDDD  222 (717)
T ss_pred             EEeccccccccccccccccCCCeeEeecCC
Confidence            776532111111112356678999997754

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.52  E-value=27  Score=32.35  Aligned_cols=29  Identities=14%  Similarity=-0.069  Sum_probs=22.1

Q ss_pred             CCCeeEEEecCCCCcEEEEEecCCeEEEEe
Q 020480          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFD  154 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd  154 (325)
                      .-.|..+..++.| ..+|-.|.+|.+.++=
T Consensus       103 ~feV~~vl~s~~G-S~VaL~G~~Gi~vMeL  131 (741)
T KOG4460|consen  103 LFEVYQVLLSPTG-SHVALIGIKGLMVMEL  131 (741)
T ss_pred             eEEEEEEEecCCC-ceEEEecCCeeEEEEc
Confidence            3467888999999 5777778888776654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=86.23  E-value=4.2  Score=33.30  Aligned_cols=77  Identities=5%  Similarity=-0.005  Sum_probs=48.6

Q ss_pred             ceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEe-ee-------cCCccEEEEEeecCCCcEEEEEecCCc
Q 020480          180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI-FK-------VHEGVVEDVAWHLRHEYLFGSVGDDQY  251 (325)
Q Consensus       180 ~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~-------~~~~~v~~v~~~p~~~~~l~s~~~dg~  251 (325)
                      ++..+..  .+. ++++.+.+|.+++||+...+.......+.. +.       .....|..+..+.+| .-+++- .+|.
T Consensus        14 ~~~~l~~--~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~l-sng~   88 (219)
T PF07569_consen   14 PVSFLEC--NGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTL-SNGD   88 (219)
T ss_pred             ceEEEEe--CCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEE-eCCC
Confidence            3444443  355 799999999999999998754211101111 11       345678888888776 455444 4578


Q ss_pred             EEEEEccCCC
Q 020480          252 LLIWDLRTPS  261 (325)
Q Consensus       252 i~iwd~~~~~  261 (325)
                      .+.|+..-..
T Consensus        89 ~y~y~~~L~~   98 (219)
T PF07569_consen   89 SYSYSPDLGC   98 (219)
T ss_pred             EEEeccccce
Confidence            8899876654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=86.17  E-value=18  Score=32.85  Aligned_cols=98  Identities=11%  Similarity=0.037  Sum_probs=58.6

Q ss_pred             EEEecCCCCCeEEEEeCCCcEEE---EeCCCCC-CC--CcccceEeeecCC-ccEEEEEeecC----------CCcEEEE
Q 020480          183 GLSWSKFKEGHLLSGSDDAQICL---WDINAAP-KN--KSLEAMQIFKVHE-GVVEDVAWHLR----------HEYLFGS  245 (325)
Q Consensus       183 ~l~~~p~~~~~l~s~s~dg~i~i---wd~~~~~-~~--~~~~~~~~~~~~~-~~v~~v~~~p~----------~~~~l~s  245 (325)
                      .++.+|++. +++.+..+..+.+   |+..... ..  ..+.....+.... ..|+++.|-|-          +-..++.
T Consensus         6 ~isls~~~d-~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~V   84 (415)
T PF14655_consen    6 SISLSPDGD-LLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAV   84 (415)
T ss_pred             eEEecCCCC-EEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEE
Confidence            466788887 7777776665554   5442211 10  0011111111111 46777776553          1378999


Q ss_pred             EecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCC
Q 020480          246 VGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASF  285 (325)
Q Consensus       246 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~  285 (325)
                      |..+|.|++|......    +..-.-|..+|..|.+....
T Consensus        85 G~ssG~vrfyte~G~L----L~~Q~~h~~pV~~ik~~~~~  120 (415)
T PF14655_consen   85 GTSSGYVRFYTENGVL----LLSQLLHEEPVLKIKCRSTK  120 (415)
T ss_pred             EecccEEEEEeccchH----HHHHhcCccceEEEEecccC
Confidence            9999999999874432    44445588999999886543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=85.60  E-value=19  Score=29.69  Aligned_cols=97  Identities=9%  Similarity=0.111  Sum_probs=62.4

Q ss_pred             EEEEecCCCCCeEEEEeCCCcEEEEe--CCCCCCCCcccceEeeec---CCc-cEEEEEeecCCCcEEEEEecCCcEEEE
Q 020480          182 YGLSWSKFKEGHLLSGSDDAQICLWD--INAAPKNKSLEAMQIFKV---HEG-VVEDVAWHLRHEYLFGSVGDDQYLLIW  255 (325)
Q Consensus       182 ~~l~~~p~~~~~l~s~s~dg~i~iwd--~~~~~~~~~~~~~~~~~~---~~~-~v~~v~~~p~~~~~l~s~~~dg~i~iw  255 (325)
                      ..++|+.+...+.+.-+.+-.|.-||  ..++..... ..+..++.   ... .--.++....| ++++++-..++|..+
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr-~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNR-KVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGGTVQKV  238 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCc-ceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCcEEEEE
Confidence            57889887775667777788887787  444432210 01111111   111 11223344455 688888899999999


Q ss_pred             EccCCCCCCCeeEeeccCCCeeEEEeCC
Q 020480          256 DLRTPSVSKPVQSVVAHQSEVGVSILNA  283 (325)
Q Consensus       256 d~~~~~~~~~~~~~~~h~~~v~~i~~~p  283 (325)
                      |..+++.   +..++-....|+|.+|--
T Consensus       239 dp~tGK~---L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  239 DPTTGKI---LLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             CCCCCcE---EEEEEcCCCceEEEEecC
Confidence            9999984   777776788899999963

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=85.18  E-value=19  Score=29.24  Aligned_cols=110  Identities=12%  Similarity=0.100  Sum_probs=62.9

Q ss_pred             EEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC---C---cEEEE---eCCC
Q 020480          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD---A---QICLW---DINA  210 (325)
Q Consensus       140 ~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d---g---~i~iw---d~~~  210 (325)
                      .|..+.....|.+|++..        ....+..++..- +.|..+.++..|. +++|--.+   .   .+|+|   ....
T Consensus        30 ~Lfva~~g~~Vev~~l~~--------~~~~~~~~F~Tv-~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~   99 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQ--------EECPLLCTFSTV-GRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQK   99 (215)
T ss_pred             eEEEEcCCCEEEEEEccc--------CCCceeEEEcch-hheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhc
Confidence            444446667899999985        345666777543 7899999999998 78875322   2   56665   2221


Q ss_pred             CCCCC----------------ccc-ceEee-ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480          211 APKNK----------------SLE-AMQIF-KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (325)
Q Consensus       211 ~~~~~----------------~~~-~~~~~-~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~  261 (325)
                      .....                ... .+... -.-+..+.+++..|..+++++ | .++.+.+|-++...
T Consensus       100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g-~~~~l~lf~l~~~~  166 (215)
T PF14761_consen  100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-G-CGNKLVLFTLKYQT  166 (215)
T ss_pred             ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-E-cCCEEEEEEEEEEE
Confidence            11000                000 00000 012345677777776555653 3 35678888876543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.16  E-value=23  Score=30.24  Aligned_cols=125  Identities=13%  Similarity=0.183  Sum_probs=74.8

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE--ecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL--RGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      +-...|.++.|+|+...++++......|.--+.+.           ..++++  .+.. -.-.+.+..++. +.++--.+
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G-----------dlirtiPL~g~~-DpE~Ieyig~n~-fvi~dER~  149 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG-----------DLIRTIPLTGFS-DPETIEYIGGNQ-FVIVDERD  149 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCC-----------ceEEEecccccC-ChhHeEEecCCE-EEEEehhc
Confidence            44556999999999866777765555555445443           223333  2322 234667776665 66666678


Q ss_pred             CcEEEEeCCCCCCCCccc----ceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480          201 AQICLWDINAAPKNKSLE----AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~----~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~  261 (325)
                      +.+.++.+..........    ++......+.....++|.|.+. .|..+-.-.-+.||......
T Consensus       150 ~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~  213 (316)
T COG3204         150 RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSP  213 (316)
T ss_pred             ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCC
Confidence            888888776653221111    1222222256788899999874 55566666667777766443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=84.88  E-value=13  Score=33.47  Aligned_cols=56  Identities=9%  Similarity=-0.050  Sum_probs=36.0

Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEE-EEeecCCCcEEEEEecCCcEEEEEc
Q 020480          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED-VAWHLRHEYLFGSVGDDQYLLIWDL  257 (325)
Q Consensus       193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~-v~~~p~~~~~l~s~~~dg~i~iwd~  257 (325)
                      .++.++.+|.+...|..+++      .+....-....+.+ ....  + ..|+.++.||.|..+++
T Consensus       337 ~l~v~~~~G~l~~ld~~tG~------~~~~~~~~~~~~~s~P~~~--~-~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        337 YLVVGDSEGYLHWINREDGR------FVAQQKVDSSGFLSEPVVA--D-DKLLIQARDGTVYAITR  393 (394)
T ss_pred             EEEEEeCCCEEEEEECCCCC------EEEEEEcCCCcceeCCEEE--C-CEEEEEeCCceEEEEeC
Confidence            68889999999999998874      23333322222322 1121  3 35778899999888764

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.77  E-value=2.3  Score=42.57  Aligned_cols=101  Identities=12%  Similarity=0.098  Sum_probs=66.4

Q ss_pred             CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  204 (325)
                      ..-+.++.|+|.-+...|++..|+.|++..+...         ...+..+ ..+...++++|+|.|. .++.|...|++.
T Consensus       155 ~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~---------~~~v~s~-p~t~~~Tav~WSprGK-Ql~iG~nnGt~v  223 (1405)
T KOG3630|consen  155 PVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL---------AQNVTSF-PVTNSQTAVLWSPRGK-QLFIGRNNGTEV  223 (1405)
T ss_pred             ccccccccccCCccchhhhhccccchhhhhhhhh---------hhhhccc-CcccceeeEEeccccc-eeeEecCCCeEE
Confidence            3455678888866566778888999999887651         1111122 3456789999999999 899999999998


Q ss_pred             EEeCCCCCCCCcccceEeeecCCccEEEEEeecCC
Q 020480          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH  239 (325)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  239 (325)
                      -|......+. .+.+. .... ...|.+|+|-...
T Consensus       224 Qy~P~leik~-~ip~P-p~~e-~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  224 QYEPSLEIKS-EIPEP-PVEE-NYRVLSVTWLSTQ  255 (1405)
T ss_pred             Eeecccceee-cccCC-CcCC-CcceeEEEEecce
Confidence            8876533110 01111 1111 4679999998653

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=84.73  E-value=4.2  Score=22.83  Aligned_cols=41  Identities=10%  Similarity=0.001  Sum_probs=26.1

Q ss_pred             cCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEe
Q 020480          237 LRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL  281 (325)
Q Consensus       237 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~  281 (325)
                      |++..++++.-.+++|.++|..+...   +..+.. ......++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~---~~~i~v-g~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKV---IATIPV-GGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeE---EEEEEC-CCCCceEEe
Confidence            45656777777899999999977663   455443 233344444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=84.70  E-value=5  Score=22.26  Aligned_cols=30  Identities=17%  Similarity=0.314  Sum_probs=20.9

Q ss_pred             CCccEEEEEeecCCCcEEEEEecC--CcEEEE
Q 020480          226 HEGVVEDVAWHLRHEYLFGSVGDD--QYLLIW  255 (325)
Q Consensus       226 ~~~~v~~v~~~p~~~~~l~s~~~d--g~i~iw  255 (325)
                      ....-....|+|+|..++.++..+  |...||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344567789999997777677776  766665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=84.27  E-value=27  Score=30.34  Aligned_cols=128  Identities=9%  Similarity=0.009  Sum_probs=72.0

Q ss_pred             eEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEE
Q 020480          116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL  195 (325)
Q Consensus       116 ~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~  195 (325)
                      +...........+.++....   +++++|..-..|.++.+....      .....+ .-......++++.+-+++. .++
T Consensus       120 l~~~~~~~~~~~i~sl~~~~---~~I~vgD~~~sv~~~~~~~~~------~~l~~v-a~d~~~~~v~~~~~l~d~~-~~i  188 (321)
T PF03178_consen  120 LLKKAFYDSPFYITSLSVFK---NYILVGDAMKSVSLLRYDEEN------NKLILV-ARDYQPRWVTAAEFLVDED-TII  188 (321)
T ss_dssp             EEEEEEE-BSSSEEEEEEET---TEEEEEESSSSEEEEEEETTT------E-EEEE-EEESS-BEEEEEEEE-SSS-EEE
T ss_pred             chhhheecceEEEEEEeccc---cEEEEEEcccCEEEEEEEccC------CEEEEE-EecCCCccEEEEEEecCCc-EEE
Confidence            55555555555777777664   588898888888888655410      111111 1123355688999987775 899


Q ss_pred             EEeCCCcEEEEeCCCCCC----CC-cccceEeeecCCccEEEE---EeecC--CC-----cEEEEEecCCcEEEE
Q 020480          196 SGSDDAQICLWDINAAPK----NK-SLEAMQIFKVHEGVVEDV---AWHLR--HE-----YLFGSVGDDQYLLIW  255 (325)
Q Consensus       196 s~s~dg~i~iwd~~~~~~----~~-~~~~~~~~~~~~~~v~~v---~~~p~--~~-----~~l~s~~~dg~i~iw  255 (325)
                      .+..+|.+.++.......    .. .+.....+. ....|+++   ++.|.  +.     ..++-++.+|.|.+.
T Consensus       189 ~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  189 VGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            999999999998763211    11 222333333 33557776   55552  22     247788889988844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=84.16  E-value=11  Score=35.82  Aligned_cols=105  Identities=14%  Similarity=0.065  Sum_probs=55.7

Q ss_pred             cEEEEEecCCe-----EEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC------cEEEEe
Q 020480          139 FLIATKTVSAE-----VYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA------QICLWD  207 (325)
Q Consensus       139 ~~la~g~~dg~-----v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg------~i~iwd  207 (325)
                      .+.|+||.||.     |..||..+        ..+..+..+.......-...+  ++. +.+.|+.++      ++..||
T Consensus       382 ~iYavGG~dg~~~l~svE~YDp~~--------~~W~~va~m~~~r~~~gv~~~--~g~-iYi~GG~~~~~~~l~sve~YD  450 (571)
T KOG4441|consen  382 KLYAVGGFDGEKSLNSVECYDPVT--------NKWTPVAPMLTRRSGHGVAVL--GGK-LYIIGGGDGSSNCLNSVECYD  450 (571)
T ss_pred             EEEEEeccccccccccEEEecCCC--------CcccccCCCCcceeeeEEEEE--CCE-EEEEcCcCCCccccceEEEEc
Confidence            68899998874     66677766        444444333221111112222  234 777777554      467788


Q ss_pred             CCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc-----EEEEEccCCC
Q 020480          208 INAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY-----LLIWDLRTPS  261 (325)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~-----i~iwd~~~~~  261 (325)
                      ..+..-.    .+..+..-..... ++.- + ..+++.||.|+.     |..||.++.+
T Consensus       451 P~t~~W~----~~~~M~~~R~~~g-~a~~-~-~~iYvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  451 PETNTWT----LIAPMNTRRSGFG-VAVL-N-GKIYVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             CCCCcee----ecCCcccccccce-EEEE-C-CEEEEECCccCCCccceEEEEcCCCCc
Confidence            7765321    1111111111111 2222 2 368888888773     7778888766

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=83.73  E-value=5.6  Score=22.05  Aligned_cols=30  Identities=7%  Similarity=0.162  Sum_probs=21.3

Q ss_pred             CCCceEEEEecCCCCCeEEEEeCC--CcEEEE
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGSDD--AQICLW  206 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s~d--g~i~iw  206 (325)
                      ....-....|+|+|..++.++..+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            444567889999999777777777  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=83.66  E-value=31  Score=30.53  Aligned_cols=148  Identities=10%  Similarity=0.064  Sum_probs=77.4

Q ss_pred             CCCeeEEEecCCCCcEEEEE-ecCC---eEEEEeCCCCCCCCCCCCCCCCcEEEe--cCCCceEEEEec-CCCCCeEEEE
Q 020480          125 DGEVNRARYMPQNPFLIATK-TVSA---EVYVFDYSKHPSKPPLDGACSPDLRLR--GHSTEGYGLSWS-KFKEGHLLSG  197 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g-~~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~-p~~~~~l~s~  197 (325)
                      ...+..+.|.+++..+++.- ..+.   .+.++|...        +....+..-.  +.-..-....|. +++..++...
T Consensus       183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t--------g~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s  254 (353)
T PF00930_consen  183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST--------GETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWIS  254 (353)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT--------TTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEE
T ss_pred             ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC--------CceeEEEEecCCcceeeecccccccCCCCEEEEEE
Confidence            45677888888873233332 2222   455566654        2222222111  111122345554 7777677777


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEE-EEeecCCCcEEEEEecC--CcEEEEEccCC-CCCCCeeEeeccC
Q 020480          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED-VAWHLRHEYLFGSVGDD--QYLLIWDLRTP-SVSKPVQSVVAHQ  273 (325)
Q Consensus       198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~-v~~~p~~~~~l~s~~~d--g~i~iwd~~~~-~~~~~~~~~~~h~  273 (325)
                      ..+|.-+||-+.....     ....+....-.|.. +.|++.+..++.++..+  +.-+||-+... ..  .+..+....
T Consensus       255 ~~~G~~hly~~~~~~~-----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~--~~~~LT~~~  327 (353)
T PF00930_consen  255 ERDGYRHLYLYDLDGG-----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG--EPKCLTCED  327 (353)
T ss_dssp             ETTSSEEEEEEETTSS-----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT--EEEESSTTS
T ss_pred             EcCCCcEEEEEccccc-----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC--CeEeccCCC
Confidence            7888877665554322     23345555556744 67888876676677753  34555555433 21  244443222


Q ss_pred             CCeeEEEeCCCCCc
Q 020480          274 SEVGVSILNASFRL  287 (325)
Q Consensus       274 ~~v~~i~~~p~~~~  287 (325)
                      ..-..+.|+|+|++
T Consensus       328 ~~~~~~~~Spdg~y  341 (353)
T PF00930_consen  328 GDHYSASFSPDGKY  341 (353)
T ss_dssp             STTEEEEE-TTSSE
T ss_pred             CCceEEEECCCCCE
Confidence            22258999999985

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.30  E-value=17  Score=28.36  Aligned_cols=32  Identities=19%  Similarity=0.289  Sum_probs=27.0

Q ss_pred             CCeeEEEecCCC-----CcEEEEEecCCeEEEEeCCC
Q 020480          126 GEVNRARYMPQN-----PFLIATKTVSAEVYVFDYSK  157 (325)
Q Consensus       126 ~~v~~v~~~~~~-----~~~la~g~~dg~v~vwd~~~  157 (325)
                      ..|.+++|||.|     ..+||+.+.+|.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            488999999954     45899999999999998765

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=83.29  E-value=9  Score=34.61  Aligned_cols=106  Identities=11%  Similarity=0.069  Sum_probs=52.7

Q ss_pred             CCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-C-CceEEEEe--cCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceE-
Q 020480          147 SAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-S-TEGYGLSW--SKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ-  221 (325)
Q Consensus       147 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h-~-~~v~~l~~--~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-  221 (325)
                      ..++++||+..          .++++++.-- . ....-+.|  .|....-++.+....+|..|--.... .+....+- 
T Consensus       221 G~~l~vWD~~~----------r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g-~W~a~kVi~  289 (461)
T PF05694_consen  221 GHSLHVWDWST----------RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG-EWAAEKVID  289 (461)
T ss_dssp             --EEEEEETTT----------TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT-EEEEEEEEE
T ss_pred             cCeEEEEECCC----------CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC-CeeeeEEEE
Confidence            45899999987          4445555422 2 23445555  55555446666666666666442211 11111111 


Q ss_pred             ----------------eeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC
Q 020480          222 ----------------IFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS  263 (325)
Q Consensus       222 ----------------~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  263 (325)
                                      .+.+-..-|+++..|.++..+.+++=..|.||.||+......
T Consensus       290 ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  290 IPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             E--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred             CCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence                            111223568899999998666677779999999999987653

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA02713 hypothetical protein; Provisional

Probab=83.01  E-value=28  Score=33.04  Aligned_cols=62  Identities=6%  Similarity=-0.027  Sum_probs=35.5

Q ss_pred             eEEEEeCC------CcEEEEeCCC-CCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC--cEEEEEccCCC
Q 020480          193 HLLSGSDD------AQICLWDINA-APKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPS  261 (325)
Q Consensus       193 ~l~s~s~d------g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg--~i~iwd~~~~~  261 (325)
                      +.+.|+.+      ..+..||..+ ..-    ..+..+.........+..  + ..+.+.||.+|  ++..||..+.+
T Consensus       466 IYv~GG~~~~~~~~~~ve~Ydp~~~~~W----~~~~~m~~~r~~~~~~~~--~-~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        466 IYVVCDIKDEKNVKTCIFRYNTNTYNGW----ELITTTESRLSALHTILH--D-NTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             EEEEeCCCCCCccceeEEEecCCCCCCe----eEccccCcccccceeEEE--C-CEEEEEeeecceeehhhcCccccc
Confidence            56666654      2467788886 322    112222222222323333  3 37889999888  77888888776

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=82.49  E-value=0.3  Score=43.96  Aligned_cols=111  Identities=17%  Similarity=0.288  Sum_probs=75.6

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeCC
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ..-++....++|..+++..++.+-..+.+.+|++...        .   ...+. +-+..-.-+.|++... .++.+...
T Consensus        71 ~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~e--------y---tqqLE~gg~~s~sll~wsKg~~-el~ig~~~  138 (615)
T KOG2247|consen   71 LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE--------Y---TQQLESGGTSSKSLLAWSKGTP-ELVIGNNA  138 (615)
T ss_pred             cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhh--------h---HHHHhccCcchHHHHhhccCCc-cccccccc
Confidence            3456677788898888777777788899999999861        1   11111 1111222378999888 68888899


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL  252 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i  252 (325)
                      |.+.|++....+.      +-....|...+.+++|.+.+  +.+.++.|..+
T Consensus       139 gn~viynhgtsR~------iiv~Gkh~RRgtq~av~lEd--~vil~dcd~~L  182 (615)
T KOG2247|consen  139 GNIVIYNHGTSRR------IIVMGKHQRRGTQIAVTLED--YVILCDCDNTL  182 (615)
T ss_pred             cceEEEeccchhh------hhhhcccccceeEEEecccc--eeeecCcHHHH
Confidence            9999999887643      22223388889999999865  45566655443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.81  E-value=26  Score=29.90  Aligned_cols=128  Identities=14%  Similarity=0.177  Sum_probs=75.7

Q ss_pred             eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEe
Q 020480          128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD  207 (325)
Q Consensus       128 v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd  207 (325)
                      -..+.+...| .+.++--.++.+.++.+.........+....++......+...-.++|.|... .|+.+-.-.-+.||.
T Consensus       131 pE~Ieyig~n-~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~  208 (316)
T COG3204         131 PETIEYIGGN-QFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFE  208 (316)
T ss_pred             hhHeEEecCC-EEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEE
Confidence            3445666655 45555556788888887653221110010111111112245678999999988 677788888888888


Q ss_pred             CCCCCCCCcccceEeeecC-------CccEEEEEeecCCCcEEEEEecCCcEEEEEccCC
Q 020480          208 INAAPKNKSLEAMQIFKVH-------EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP  260 (325)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~-------~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~  260 (325)
                      +......-.   .+....+       -..|.++.|++...++++-+..++.+.-.|....
T Consensus       209 ~~~~~~~l~---~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         209 VTQSPSSLS---VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             EecCCcccc---cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence            775432211   1111111       1346778888866678888888888888877654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=80.79  E-value=14  Score=30.32  Aligned_cols=70  Identities=16%  Similarity=0.125  Sum_probs=43.7

Q ss_pred             cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE-----ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCC
Q 020480          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-----RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAA  211 (325)
Q Consensus       139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~  211 (325)
                      +++++-+.+|.+++||+........+ ....|+...     ......|..+....+|. -+++-+ +|..+.|+...+
T Consensus        23 ~~Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-ng~~y~y~~~L~   97 (219)
T PF07569_consen   23 SYLLAITSSGLLYVWNLKKGKAVLPP-VSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-NGDSYSYSPDLG   97 (219)
T ss_pred             CEEEEEeCCCeEEEEECCCCeeccCC-ccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-CCCEEEeccccc
Confidence            57888899999999999873222110 001111100     03456788888887776 555554 578899987754

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=80.68  E-value=37  Score=32.37  Aligned_cols=118  Identities=10%  Similarity=-0.024  Sum_probs=62.3

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecC-C-----eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVS-A-----EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~d-g-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  197 (325)
                      ....-.+++... + .++++||.+ |     ++..||...        ..+..+..+............  +|. +.+.|
T Consensus       321 ~~r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~--------~~W~~~a~M~~~R~~~~v~~l--~g~-iYavG  387 (571)
T KOG4441|consen  321 SPRCRVGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRT--------NQWTPVAPMNTKRSDFGVAVL--DGK-LYAVG  387 (571)
T ss_pred             cccccccEEEEC-C-EEEEEccccCCCcccceEEEecCCC--------CceeccCCccCccccceeEEE--CCE-EEEEe
Confidence            444444555554 3 689999998 3     577788776        444443333322211111111  244 78888


Q ss_pred             eCCCc-----EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC------cEEEEEccCCC
Q 020480          198 SDDAQ-----ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ------YLLIWDLRTPS  261 (325)
Q Consensus       198 s~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg------~i~iwd~~~~~  261 (325)
                      +.||.     +-.||..+.+-.    .+..........-.+.+   +..+.+.||.++      ++..||..+..
T Consensus       388 G~dg~~~l~svE~YDp~~~~W~----~va~m~~~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~  455 (571)
T KOG4441|consen  388 GFDGEKSLNSVECYDPVTNKWT----PVAPMLTRRSGHGVAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNT  455 (571)
T ss_pred             ccccccccccEEEecCCCCccc----ccCCCCcceeeeEEEEE---CCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence            88864     677887765321    11111111112222222   236788888554      46788887765

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.05  E-value=26  Score=31.65  Aligned_cols=98  Identities=15%  Similarity=0.062  Sum_probs=56.5

Q ss_pred             eEEEEecCCCCCeEEEEeCCCc----EEEEeCCCCCCCCcccceE-eeecCCccEEEEEeecCCCcEEEEEecCC-----
Q 020480          181 GYGLSWSKFKEGHLLSGSDDAQ----ICLWDINAAPKNKSLEAMQ-IFKVHEGVVEDVAWHLRHEYLFGSVGDDQ-----  250 (325)
Q Consensus       181 v~~l~~~p~~~~~l~s~s~dg~----i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~p~~~~~l~s~~~dg-----  250 (325)
                      +....++|++..++++.+..|.    ++++|+.++..      +. .+...  ....+.|.+++..++.+...+.     
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~------l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~  197 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF------LPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSD  197 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE------EEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC------cCCccccc--ccceEEEeCCCCEEEEEEeCccccccc
Confidence            4467889999955555555554    99999998732      22 22211  1223999999766666654432     


Q ss_pred             -----cEEEEEccCCCCCCCeeEeeccCCC--eeEEEeCCCCCc
Q 020480          251 -----YLLIWDLRTPSVSKPVQSVVAHQSE--VGVSILNASFRL  287 (325)
Q Consensus       251 -----~i~iwd~~~~~~~~~~~~~~~h~~~--v~~i~~~p~~~~  287 (325)
                           .|+.|.+.+.... ....+......  ...+..++++++
T Consensus       198 ~~~~~~v~~~~~gt~~~~-d~lvfe~~~~~~~~~~~~~s~d~~~  240 (414)
T PF02897_consen  198 SGYPRQVYRHKLGTPQSE-DELVFEEPDEPFWFVSVSRSKDGRY  240 (414)
T ss_dssp             CGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSE
T ss_pred             CCCCcEEEEEECCCChHh-CeeEEeecCCCcEEEEEEecCcccE
Confidence                 2667777665421 12333332222  567888999984

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	325
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-100
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-05
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-98
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-98
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		3e-98
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-05
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-97
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-05
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-96
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		9e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		6e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		7e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-04
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		2e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		2e-04

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score =  362 bits (930), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/269 (64%), Positives = 209/269 (77%), Gaps = 2/269 (0%)
Query: 15  RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
           R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+
Sbjct: 15  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74
Query: 75  NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
            E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYM
Sbjct: 75  -EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
           PQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHL
Sbjct: 134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
           LS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL HE LFGSV DDQ L+
Sbjct: 194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           IWD R+ + SKP  SV AH +EV     N
Sbjct: 254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG-- 181
           H  EVN   + P + F++AT +    V ++D                +L+L+ HS E   
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR--------------NLKLKLHSFESHK 317
Query: 182 ---YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ--------IFKVHEGVV 230
              + + WS   E  L S   D ++ +WD++   + +S E  +        I   H   +
Sbjct: 318 DEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKI 377
Query: 231 EDVAWHLRHEYLFGSVGDDQYLLIWDL 257
            D +W+    ++  SV +D  + +W +
Sbjct: 378 SDFSWNPNEPWVICSVSEDNIMQVWQM 404

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score =  355 bits (911), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 171/269 (63%), Positives = 206/269 (76%), Gaps = 2/269 (0%)
Query: 15  RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
           R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD  +  GKDYSV ++ILGTHTS+
Sbjct: 19  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 78
Query: 75  NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
            E N+L++A VQLP +D++ D  HYD+++ +FGGFG   GK++I  +INH+GEVNRARYM
Sbjct: 79  -EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYM 137
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
           PQN  +IATKT S++V VFDY+KHPSKP   G C PDLRLRGH  EGYGLSW+    G+L
Sbjct: 138 PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 197
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
           LS SDD  ICLWDINA PK ++ ++A  IF  H  VVEDVAWHL HE LFGSV DDQ L+
Sbjct: 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 257
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           IWD R  + SKP  +V AH +EV     N
Sbjct: 258 IWDTRNNNTSKPSHTVDAHTAEVNCLSFN 286

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG-- 181
           H  EVN   + P + F++AT +    V ++D                +L+L+ HS E   
Sbjct: 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR--------------NLKLKLHSFESHK 321
Query: 182 ---YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ--------IFKVHEGVV 230
              + + WS   E  L S   D ++ +WD++   + +S E  +        I   H   +
Sbjct: 322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 381
Query: 231 EDVAWHLRHEYLFGSVGDDQYLLIWDL 257
            D +W+    ++  SV +D  + +W +
Sbjct: 382 SDFSWNPNEPWIICSVSEDNIMQVWQM 408

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score =  355 bits (911), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 171/269 (63%), Positives = 206/269 (76%), Gaps = 2/269 (0%)
Query: 15  RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
           R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD  +  GKDYSV ++ILGTHTS+
Sbjct: 21  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 80
Query: 75  NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
            E N+L++A VQLP +D++ D  HYD+++ +FGGFG   GK++I  +INH+GEVNRARYM
Sbjct: 81  -EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYM 139
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
           PQN  +IATKT S++V VFDY+KHPSKP   G C PDLRLRGH  EGYGLSW+    G+L
Sbjct: 140 PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 199
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
           LS SDD  ICLWDINA PK ++ ++A  IF  H  VVEDVAWHL HE LFGSV DDQ L+
Sbjct: 200 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 259
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           IWD R  + SKP  +V AH +EV     N
Sbjct: 260 IWDTRNNNTSKPSHTVDAHTAEVNCLSFN 288

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG-- 181
           H  EVN   + P + F++AT +    V ++D                +L+L+ HS E   
Sbjct: 278 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR--------------NLKLKLHSFESHK 323
Query: 182 ---YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ--------IFKVHEGVV 230
              + + WS   E  L S   D ++ +WD++   + +S E  +        I   H   +
Sbjct: 324 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 383
Query: 231 EDVAWHLRHEYLFGSVGDDQYLLIWDL 257
            D +W+    ++  SV +D  + +W +
Sbjct: 384 SDFSWNPNEPWIICSVSEDNIMQVWQM 410

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score =  354 bits (909), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 171/269 (63%), Positives = 206/269 (76%), Gaps = 2/269 (0%)
Query: 15  RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
           R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD  +  GKDYSV ++ILGTHTS+
Sbjct: 23  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 82
Query: 75  NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
            E N+L++A VQLP +D++ D  HYD+++ +FGGFG   GK++I  +INH+GEVNRARYM
Sbjct: 83  -EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYM 141
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
           PQN  +IATKT S++V VFDY+KHPSKP   G C PDLRLRGH  EGYGLSW+    G+L
Sbjct: 142 PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 201
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
           LS SDD  ICLWDINA PK ++ ++A  IF  H  VVEDVAWHL HE LFGSV DDQ L+
Sbjct: 202 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 261
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           IWD R  + SKP  +V AH +EV     N
Sbjct: 262 IWDTRNNNTSKPSHTVDAHTAEVNCLSFN 290

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG-- 181
           H  EVN   + P + F++AT +    V ++D                +L+L+ HS E   
Sbjct: 280 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR--------------NLKLKLHSFESHK 325
Query: 182 ---YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ--------IFKVHEGVV 230
              + + WS   E  L S   D ++ +WD++   + +S E  +        I   H   +
Sbjct: 326 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 385
Query: 231 EDVAWHLRHEYLFGSVGDDQYLLIWDL 257
            D +W+    ++  SV +D  + +W +
Sbjct: 386 SDFSWNPNEPWIICSVSEDNIMQVWQM 412

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score =  352 bits (904), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 168/269 (62%), Positives = 206/269 (76%), Gaps = 2/269 (0%)
Query: 15  RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
           R+INEEYKIWKKNTPFLYDLV+THAL+WPSLTV+WLP+  +P GKDY++  ++LGTHTS+
Sbjct: 17  RVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSD 76
Query: 75  NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
            E N+L++A+V +P DD++ DA H D D+ +FGGFG   GK++   +INH+GEVNRARYM
Sbjct: 77  -EQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYM 135
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
           PQNP +IATKT S++V VFDY+KHP+KP   G C+PDLRLRGH  EGYGLSW+    GHL
Sbjct: 136 PQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHL 195
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
           LS SDD  +CLWDINA PK  K ++A  IF  H  VVEDVAWHL HE LFGSV DDQ L+
Sbjct: 196 LSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLM 255
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           IWD R+ + SKP   V AH +EV     N
Sbjct: 256 IWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG-- 181
           H  EVN   + P + F++AT +    V ++D                +L+L+ H+ E   
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLR--------------NLKLKLHTFESHK 319
Query: 182 ---YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ--------IFKVHEGVV 230
              + + WS   E  L S   D ++ +WD++   + +S E  +        I   H   +
Sbjct: 320 DEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Query: 231 EDVAWHLRHEYLFGSVGDDQYLLIWDL 257
            D +W+    ++  SV +D  + IW +
Sbjct: 380 SDFSWNPNEPWVICSVSEDNIMQIWQM 406

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score =  347 bits (890), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 167/269 (62%), Positives = 203/269 (75%), Gaps = 2/269 (0%)
Query: 15  RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
           R+INEEYKIWKKNTPFLYDLV THAL+WPSLTV+WLP+  +P GKDY++  ++LGTHTS+
Sbjct: 17  RVINEEYKIWKKNTPFLYDLVXTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSD 76
Query: 75  NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
            E N+L++A+V +P DD++ DA H D D+ +FGGFG   GK++   +INH+GEVNRARY 
Sbjct: 77  -EQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYX 135
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
           PQNP +IATKT S++V VFDY+KHP+KP   G C+PDLRLRGH  EGYGLSW+    GHL
Sbjct: 136 PQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHL 195
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
           LS SDD  +CLWDINA PK  K ++A  IF  H  VVEDVAWHL HE LFGSV DDQ L 
Sbjct: 196 LSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLX 255
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVGVSILN 282
           IWD R+ + SKP   V AH +EV     N
Sbjct: 256 IWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGV 229
           P   +  H+ E   LS++ + E  L +GS D  + LWD+    +N  L+ +  F+ H+  
Sbjct: 267 PSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL----RNLKLK-LHTFESHKDE 321
Query: 230 VEDVAWHLRHEYLFGSVGDDQYLLIWDL 257
           +  V W   +E +  S G D+ L +WDL
Sbjct: 322 IFQVHWSPHNETILASSGTDRRLNVWDL 349

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           L GHS E  GL W+     HL SG +D  + +W   +AP       +Q F  H+G V+ V
Sbjct: 237 LSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWP--SAPGEGGWVPLQTFTQHQGAVKAV 293
Query: 234 AWHLRHEYLFGSVG--DDQYLLIWDL 257
           AW      +  + G   D+++ IW++
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNV 319

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           L GHS E  GL W+     HL SG +D  + +W   +AP       +Q F  H+G V+ V
Sbjct: 226 LSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWP--SAPGEGGWVPLQTFTQHQGAVKAV 282
Query: 234 AWHLRHEYLFGSVG--DDQYLLIWDL 257
           AW      +  + G   D+++ IW++
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNV 308

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           L GHS E  GL W+     HL SG +D  + +W   +AP       +Q F  H+G V+ V
Sbjct: 146 LSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWP--SAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 234 AWHLRHEYLFGSVG--DDQYLLIWDL 257
           AW      +  + G   D+++ IW++
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNV 228

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL-EAMQIFKVHEGVVED 232
           + GH+     ++W    +  + SGS+D  + +W+I        L E +   + H   V  
Sbjct: 77  VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 233 VAWHLRHEYLFGSVGDDQYLLIWDLRT 259
           VAWH   + +  S G D  +L+WD+ T
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGT 163

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL-EAMQIFKVHEGVVEDVA 234
           GH+     ++W    +  + SGS+D  + +W+I        L E +   + H   V  VA
Sbjct: 79  GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 235 WHLRHEYLFGSVGDDQYLLIWDLRT 259
           WH   + +  S G D  +L+WD+ T
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGT 163

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.97
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.97
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.96
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.96
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.96
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.96
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.96
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.96
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.95
2pm7_B	297	Protein transport protein SEC13, protein transport	99.95
2pm7_B	297	Protein transport protein SEC13, protein transport	99.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.95
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.95
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.95
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.95
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.95
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.95
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.95
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.95
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.95
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.95
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.94
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.94
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.94
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.94
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.94
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.94
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.94
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.94
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.94
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.93
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.93
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.93
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.93
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.93
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.93
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.93
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.93
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.93
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.93
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.93
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.93
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.93
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.93
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.93
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.92
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.92
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.92
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.92
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.92
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.92
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.92
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.92
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.92
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.92
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.92
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.92
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.92
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.92
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.92
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.92
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.92
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.91
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.91
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.91
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.91
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.91
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.91
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.91
3jro_A	753	Fusion protein of protein transport protein SEC13	99.91
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.91
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.91
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.91
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.91
3jro_A	753	Fusion protein of protein transport protein SEC13	99.91
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.91
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.91
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.91
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.9
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.9
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.9
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.9
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.9
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.9
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.9
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.9
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.9
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.89
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.89
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.89
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.89
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.89
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.89
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.89
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.89
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.89
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.88
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.88
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.88
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.88
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.88
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.88
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.87
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.87
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.87
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.87
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.87
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.87
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.87
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.86
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.85
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.85
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.85
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.85
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.85
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.85
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.85
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.83
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.81
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.8
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.78
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.78
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.75
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.72
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.72
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.72
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.65
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.62
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.62
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.58
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.58
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.57
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.57
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.56
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.51
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.51
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.49
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.49
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.49
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.48
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.48
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.46
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.46
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.46
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.43
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.43
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.41
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.39
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.37
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.35
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.33
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.32
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.32
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.3
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.27
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.27
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.23
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.2
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.19
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.18
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.17
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.16
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.14
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.06
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.03
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.01
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.98
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.98
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.97
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.97
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.93
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.9
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.89
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.86
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.85
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.83
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.8
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.79
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.71
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.68
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.67
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.66
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.65
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.65
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.61
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.6
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.59
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.59
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.57
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.54
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.54
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.5
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.45
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.44
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.44
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.39
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.35
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.32
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.28
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.27
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.27
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.27
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.26
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.21
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.17
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.17
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.16
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.16
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.13
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.06
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.01
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.99
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.91
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.82
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.77
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.76
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.69
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.64
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.6
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.6
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.59
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.54
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.44
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.43
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.42
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.4
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.36
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.34
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.34
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.24
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.24
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.24
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.18
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.12
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.1
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.95
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.95
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.94
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.94
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.9
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.76
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.73
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.72
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.71
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.7
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.66
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.66
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.64
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.6
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.58
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.53
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.44
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.38
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.33
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.3
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.29
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.19
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.18
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.12
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.09
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.03
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.02
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.97
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	95.82
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	95.78
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.75
4a2l_A	795	BT_4663, two-component system sensor histidine kin	95.72
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	95.7
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	95.47
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.38
4a2l_A	795	BT_4663, two-component system sensor histidine kin	95.13
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.1
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.1
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	95.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.87
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	94.81
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	94.79
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	94.62
2p4o_A	306	Hypothetical protein; putative lactonase, structur	94.46
2p4o_A	306	Hypothetical protein; putative lactonase, structur	94.38
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.1
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	93.81
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	93.57
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	93.53
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.31
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	93.28
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	93.01
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.79
3v9f_A	781	Two-component system sensor histidine kinase/RESP	92.75
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.74
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	92.63
3v9f_A	781	Two-component system sensor histidine kinase/RESP	92.56
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	92.39
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	92.26
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	91.38
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	90.37
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	90.32
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	89.05
3kya_A	496	Putative phosphatase; structural genomics, joint c	88.66
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	88.5
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	88.48
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	88.37
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	87.27
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	87.21
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	86.35
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	85.94
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	85.59
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	84.73
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	83.67
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	81.67
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	80.89

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.5e-45  Score=333.20  Aligned_cols=299  Identities=59%  Similarity=0.998  Sum_probs=232.9

Q ss_pred             chhhhhhhhhhhhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEE
Q 020480            3 KDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLML   82 (325)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i   82 (325)
                      +.||++++..++..++||+|+||+|+|++|++++.|.++||+++++|+|+.....+..+..+++++||++.. ..|.|++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~wk~n~~~~y~~~~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~-~~n~i~i   85 (430)
T 2xyi_A            7 NAAESFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD-EQNHLLI   85 (430)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSS-SCEEEEE
T ss_pred             ccccccccchhhhhhhHHHhhHhhCChHHHHHHhhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCC-CCCEEEE
Confidence            456666777889999999999999999999999999999999999999998766677788899999999987 8999999


Q ss_pred             EEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCC
Q 020480           83 AQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP  162 (325)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~  162 (325)
                      +++.+|......+...++++.+++..+....++++....+.|.+.|++++|+|+++.+||+|+.+|.|++|++.......
T Consensus        86 ~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~  165 (430)
T 2xyi_A           86 ASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKP  165 (430)
T ss_dssp             EEEEEC--------------------------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSC
T ss_pred             EEEECCCCccccccccccccccccccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCccccc
Confidence            99998866554455556667777777777888999888999999999999999855899999999999999997532222


Q ss_pred             CCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCC-CcccceEeeecCCccEEEEEeecCCCc
Q 020480          163 PLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEY  241 (325)
Q Consensus       163 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~v~~~p~~~~  241 (325)
                      ...+...+...+.+|...|++++|+|++.++|++|+.||.|++||+...... ..+.+...+.+|...|.+++|+|.+..
T Consensus       166 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~  245 (430)
T 2xyi_A          166 EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES  245 (430)
T ss_dssp             CTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT
T ss_pred             CccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC
Confidence            2223356788899999999999999998878999999999999999874321 122235567789999999999996678


Q ss_pred             EEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--c-cCCCCceEEeeecce
Q 020480          242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--L-SHEDTCTCTHRHSRY  302 (325)
Q Consensus       242 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~-~~~~d~~~~~~~~~~  302 (325)
                      +|++++.||.|++||+++....+++..+..|...|++++|+|++.  + +++.|+++++|+++.
T Consensus       246 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~  309 (430)
T 2xyi_A          246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN  309 (430)
T ss_dssp             EEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             EEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence            999999999999999998753346788889999999999999886  3 889999999999875

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.97  E-value=4.5e-30  Score=224.95  Aligned_cols=203  Identities=17%  Similarity=0.225  Sum_probs=164.2

Q ss_pred             CCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEE
Q 020480           41 EWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ  120 (325)
Q Consensus        41 ~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (325)
                      ..++.+++|+|+.           .++.|+.     +..|++|++.-.                       .........
T Consensus        82 ~~~v~~~~~s~d~-----------~l~~~s~-----dg~v~lWd~~~~-----------------------~~~~~~~~~  122 (344)
T 4gqb_B           82 EAGVADLTWVGER-----------GILVASD-----SGAVELWELDEN-----------------------ETLIVSKFC  122 (344)
T ss_dssp             SSCEEEEEEETTT-----------EEEEEET-----TSEEEEEEECTT-----------------------SSCEEEEEE
T ss_pred             CCCEEEEEEeCCC-----------eEEEEEC-----CCEEEEEeccCC-----------------------CceeEeecc
Confidence            4568899999974           4666654     348999988411                       011122233


Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ..+|.+.|++++|+|++ ++|++|+.||.|++||+.+          ...+..+.+|...|.+++|+|++..+|++|+.|
T Consensus       123 ~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~----------~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D  191 (344)
T 4gqb_B          123 KYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQ----------QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSED  191 (344)
T ss_dssp             EECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT----------TEEEEEECCCSSCEEEEEECSSCTTEEEEEETT
T ss_pred             ccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCC----------CcEEEEEcCcCCceEEEEecCCCCCceeeeccc
Confidence            55899999999999998 7999999999999999987          455788999999999999999997789999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEee--ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIF--KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGV  278 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  278 (325)
                      ++|++||++.++.      ...+  ..+...+.+++|+|++..+|++|+.||+|++||+++++.   +..+.+|...|++
T Consensus       192 ~~v~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~---~~~~~~h~~~v~~  262 (344)
T 4gqb_B          192 NRILLWDTRCPKP------ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC---VLSSAVHSQCVTG  262 (344)
T ss_dssp             SCEEEEETTSSSC------EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C---CEEEECCSSCEEE
T ss_pred             cccccccccccce------eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE---EEEEcCCCCCEEE
Confidence            9999999998743      3333  345667999999998778999999999999999999884   8899999999999


Q ss_pred             EEeCCCCC-c--cCCCCceEEeeecce
Q 020480          279 SILNASFR-L--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       279 i~~~p~~~-~--~~~~d~~~~~~~~~~  302 (325)
                      ++|+|++. +  +++.|+++++|+.+.
T Consensus       263 v~fsp~g~~~lasgs~D~~i~vwd~~~  289 (344)
T 4gqb_B          263 LVFSPHSVPFLASLSEDCSLAVLDSSL  289 (344)
T ss_dssp             EEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred             EEEccCCCeEEEEEeCCCeEEEEECCC
Confidence            99999984 3  789999999998754

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=228.33  Aligned_cols=222  Identities=13%  Similarity=0.134  Sum_probs=175.2

Q ss_pred             hHHHHhhhHhcChhHHHH----hhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCC
Q 020480           17 INEEYKIWKKNTPFLYDL----VITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDS   92 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~----~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~   92 (325)
                      .+.+||||+.+.+.....    +..|.  -++.+++|+|++.          .++.|+..     ..|++|++.      
T Consensus       101 ~dg~v~lWd~~~~~~~~~~~~~~~~H~--~~V~~v~~spdg~----------~l~sgs~d-----~~i~iwd~~------  157 (344)
T 4gqb_B          101 DSGAVELWELDENETLIVSKFCKYEHD--DIVSTVSVLSSGT----------QAVSGSKD-----ICIKVWDLA------  157 (344)
T ss_dssp             TTSEEEEEEECTTSSCEEEEEEEECCS--SCEEEEEECTTSS----------EEEEEETT-----SCEEEEETT------
T ss_pred             CCCEEEEEeccCCCceeEeeccccCCC--CCEEEEEECCCCC----------EEEEEeCC-----CeEEEEECC------
Confidence            567899999887654322    22344  3589999999874          56666543     368888652      


Q ss_pred             CcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE
Q 020480           93 ENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL  172 (325)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~  172 (325)
                                          .++ ......+|.+.|++++|++++..+|++|+.||.|++||++.          .++..
T Consensus       158 --------------------~~~-~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~----------~~~~~  206 (344)
T 4gqb_B          158 --------------------QQV-VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC----------PKPAS  206 (344)
T ss_dssp             --------------------TTE-EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS----------SSCEE
T ss_pred             --------------------CCc-EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc----------cceee
Confidence                                122 22334579999999999999877999999999999999987          23344


Q ss_pred             EE--ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC
Q 020480          173 RL--RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ  250 (325)
Q Consensus       173 ~~--~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg  250 (325)
                      .+  ..|...+.+++|+|++..+|++|+.||.|++||++++      .++..+.+|...|++++|+|++..+||+|+.|+
T Consensus       207 ~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~  280 (344)
T 4gqb_B          207 QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC  280 (344)
T ss_dssp             ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--------CCEEEECCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred             eeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC
Confidence            44  3456679999999987768999999999999999987      457888999999999999999877899999999


Q ss_pred             cEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--c-cCCCCceEEeeecce
Q 020480          251 YLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--L-SHEDTCTCTHRHSRY  302 (325)
Q Consensus       251 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~-~~~~d~~~~~~~~~~  302 (325)
                      +|+|||+++++    +..+.+|.+.|++++|+|++.  + ++|.|+++++|++..
T Consensus       281 ~i~vwd~~~~~----~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          281 SLAVLDSSLSE----LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             CEEEECTTCCE----EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             eEEEEECCCCc----EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence            99999998876    566789999999999999886  3 788999999998754

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.97  E-value=6.9e-30  Score=221.75  Aligned_cols=220  Identities=20%  Similarity=0.259  Sum_probs=181.6

Q ss_pred             hhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcc
Q 020480           16 LINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEND   95 (325)
Q Consensus        16 ~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~   95 (325)
                      ..|.++|+|+.........+..+..  ++.+++|+|++.          .++.|+.     +..+.++++.         
T Consensus        99 s~D~~i~lWd~~~~~~~~~~~~~~~--~~~~~~~spdg~----------~l~~g~~-----dg~v~i~~~~---------  152 (321)
T 3ow8_A           99 SLDAHIRLWDLENGKQIKSIDAGPV--DAWTLAFSPDSQ----------YLATGTH-----VGKVNIFGVE---------  152 (321)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCTT--CCCCEEECTTSS----------EEEEECT-----TSEEEEEETT---------
T ss_pred             eCCCcEEEEECCCCCEEEEEeCCCc--cEEEEEECCCCC----------EEEEEcC-----CCcEEEEEcC---------
Confidence            3578899999988765555544443  477899999874          4655553     3477777652         


Q ss_pred             cCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe
Q 020480           96 ARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR  175 (325)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  175 (325)
                                       .++ .......|...|.+++|+|++ ++||+|+.||.|++||+..          .+.+..+.
T Consensus       153 -----------------~~~-~~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~----------~~~~~~~~  203 (321)
T 3ow8_A          153 -----------------SGK-KEYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIAT----------GKLLHTLE  203 (321)
T ss_dssp             -----------------TCS-EEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT----------TEEEEEEC
T ss_pred             -----------------CCc-eeEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCC----------CcEEEEEc
Confidence                             111 122345688899999999998 7999999999999999987          34577888


Q ss_pred             cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEE
Q 020480          176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW  255 (325)
Q Consensus       176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iw  255 (325)
                      +|...|.+++|+|++. +|++|+.|+.|++||++.+      .....+.+|...|.+++|+|++ .+|++|+.|++|++|
T Consensus       204 ~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~------~~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iw  275 (321)
T 3ow8_A          204 GHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHA------NLAGTLSGHASWVLNVAFCPDD-THFVSSSSDKSVKVW  275 (321)
T ss_dssp             CCSSCCCEEEECTTSC-EEEEECTTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEE
T ss_pred             ccCCceeEEEEcCCCC-EEEEEcCCCeEEEEECCCc------ceeEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEE
Confidence            9999999999999998 8999999999999999876      4577888999999999999987 689999999999999


Q ss_pred             EccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          256 DLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       256 d~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      |++++++   +..+.+|...|.+++|+|++..  +++.|+++++|+..
T Consensus       276 d~~~~~~---~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          276 DVGTRTC---VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             ETTTTEE---EEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             eCCCCEE---EEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9998874   8888999999999999999874  88999999999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.96  E-value=7.6e-29  Score=218.34  Aligned_cols=226  Identities=13%  Similarity=0.140  Sum_probs=170.3

Q ss_pred             hHHHHhhhHhcChhHHHHh--hhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCc
Q 020480           17 INEEYKIWKKNTPFLYDLV--ITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEN   94 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~--~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~   94 (325)
                      .+.++|||+...+......  ..+...-++.+++|+|++.          .++.|...     ..|++|++.        
T Consensus       113 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~----------~l~sgs~d-----g~v~iwd~~--------  169 (357)
T 4g56_B          113 DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT----------QAVSGGKD-----FSVKVWDLS--------  169 (357)
T ss_dssp             TTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS----------EEEEEETT-----SCEEEEETT--------
T ss_pred             CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC----------EEEEEeCC-----CeEEEEECC--------
Confidence            4568999998776433221  1122334689999999874          46566543     368888642        


Q ss_pred             ccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE
Q 020480           95 DARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL  174 (325)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  174 (325)
                                        .++ .......|.+.|++++|++++..++++++.||.|++||++.        +.......+
T Consensus       170 ------------------~~~-~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~--------~~~~~~~~~  222 (357)
T 4g56_B          170 ------------------QKA-VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK--------PKPATRIDF  222 (357)
T ss_dssp             ------------------TTE-EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS--------SSCBCBCCC
T ss_pred             ------------------CCc-EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC--------Cceeeeeee
Confidence                              122 22234569999999999998877899999999999999987        222222334


Q ss_pred             ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEE
Q 020480          175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI  254 (325)
Q Consensus       175 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~i  254 (325)
                      ..|...+.+++|+|++..+|++|+.|+.|++||++.+      .++..+.+|...|++++|+|++..+||+|+.|++|+|
T Consensus       223 ~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~i  296 (357)
T 4g56_B          223 CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP------DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAV  296 (357)
T ss_dssp             TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG------GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred             ccccccccchhhhhcccceEEEeecccceeEEECCCC------cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence            4677889999999987768999999999999999876      4577888999999999999998778999999999999


Q ss_pred             EEccCCCCCCCeeEeeccCCCeeEEEeCC-CCCc--cCCCCceEEeeecce
Q 020480          255 WDLRTPSVSKPVQSVVAHQSEVGVSILNA-SFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       255 wd~~~~~~~~~~~~~~~h~~~v~~i~~~p-~~~~--~~~~d~~~~~~~~~~  302 (325)
                      ||+++++    +....+|...|++|+|+| ++.+  +++.|+++++|++..
T Consensus       297 wd~~~~~----~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          297 LDADFSE----VFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             ECTTSCE----EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             EECCCCc----EeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            9999876    344457999999999998 6663  889999999998754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.96  E-value=2.6e-28  Score=218.91  Aligned_cols=220  Identities=20%  Similarity=0.251  Sum_probs=182.2

Q ss_pred             hhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcc
Q 020480           16 LINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEND   95 (325)
Q Consensus        16 ~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~   95 (325)
                      ..|.++++|+.+...+...+..|..  ++.+++|.|++.          .++.|+.     +..|.+|++.         
T Consensus       169 s~D~~i~iwd~~~~~~~~~~~~h~~--~V~~v~~~p~~~----------~l~s~s~-----D~~i~~wd~~---------  222 (410)
T 1vyh_C          169 SADMTIKLWDFQGFECIRTMHGHDH--NVSSVSIMPNGD----------HIVSASR-----DKTIKMWEVQ---------  222 (410)
T ss_dssp             ETTSCCCEEETTSSCEEECCCCCSS--CEEEEEECSSSS----------EEEEEET-----TSEEEEEETT---------
T ss_pred             eCCCeEEEEeCCCCceeEEEcCCCC--CEEEEEEeCCCC----------EEEEEeC-----CCeEEEEECC---------
Confidence            3567899999988776666666654  488999999864          4555554     3478888652         


Q ss_pred             cCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe
Q 020480           96 ARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR  175 (325)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  175 (325)
                                       .+. ......+|...|.++.|+|++ .+|++|+.||.|++||+..          ......+.
T Consensus       223 -----------------~~~-~~~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~----------~~~~~~~~  273 (410)
T 1vyh_C          223 -----------------TGY-CVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVAT----------KECKAELR  273 (410)
T ss_dssp             -----------------TCC-EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT----------CCEEEEEC
T ss_pred             -----------------CCc-EEEEEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCC----------CceeeEec
Confidence                             111 122345799999999999998 7999999999999999987          34466788


Q ss_pred             cCCCceEEEEecCC--------------------CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEe
Q 020480          176 GHSTEGYGLSWSKF--------------------KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAW  235 (325)
Q Consensus       176 ~h~~~v~~l~~~p~--------------------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~  235 (325)
                      +|...|.+++|+|+                    +. +|++|+.|+.|++||++.+      .++..+.+|...|.+++|
T Consensus       274 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~------~~~~~~~~h~~~v~~v~~  346 (410)
T 1vyh_C          274 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTG------MCLMTLVGHDNWVRGVLF  346 (410)
T ss_dssp             CCSSCEEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTT------EEEEEEECCSSCEEEEEE
T ss_pred             CCCceEEEEEEcCcccccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCC------ceEEEEECCCCcEEEEEE
Confidence            99999999999996                    44 8999999999999999987      567888999999999999


Q ss_pred             ecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          236 HLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       236 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      +|++ .+|++|+.||.|++||+++++.   +..+.+|...|++++|+|++.+  +++.|+++++|+.+
T Consensus       347 ~~~g-~~l~s~s~D~~i~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          347 HSGG-KFILSCADDKTLRVWDYKNKRC---MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CSSS-SCEEEEETTTEEEEECCTTSCC---CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             cCCC-CEEEEEeCCCeEEEEECCCCce---EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            9987 6888999999999999998874   8888999999999999999874  89999999999864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.96  E-value=5.3e-28  Score=208.16  Aligned_cols=225  Identities=15%  Similarity=0.254  Sum_probs=177.9

Q ss_pred             hhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcc
Q 020480           16 LINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEND   95 (325)
Q Consensus        16 ~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~   95 (325)
                      ..+.++++|+..+......+..|.  -++.+++|.|+..          .++.|+.     +..|.+|++.         
T Consensus        32 ~~dg~v~lWd~~~~~~~~~~~~~~--~~v~~~~~~~~~~----------~l~s~s~-----d~~i~vwd~~---------   85 (304)
T 2ynn_A           32 LYSGRVELWNYETQVEVRSIQVTE--TPVRAGKFIARKN----------WIIVGSD-----DFRIRVFNYN---------   85 (304)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCS--SCEEEEEEEGGGT----------EEEEEET-----TSEEEEEETT---------
T ss_pred             cCCCcEEEEECCCCceeEEeeccC--CcEEEEEEeCCCC----------EEEEECC-----CCEEEEEECC---------
Confidence            356789999998876555555554  4588999999874          4666654     3478888652         


Q ss_pred             cCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe
Q 020480           96 ARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR  175 (325)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  175 (325)
                                       .++ ......+|.+.|++++|+|++ .+|++|+.||+|++||+..        + ......+.
T Consensus        86 -----------------~~~-~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~--------~-~~~~~~~~  137 (304)
T 2ynn_A           86 -----------------TGE-KVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWEN--------N-WALEQTFE  137 (304)
T ss_dssp             -----------------TCC-EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGG--------T-TEEEEEEC
T ss_pred             -----------------CCc-EEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCC--------C-cchhhhhc
Confidence                             112 223345799999999999998 6999999999999999976        1 13345678


Q ss_pred             cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecC-CCcEEEEEecCCcEEE
Q 020480          176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR-HEYLFGSVGDDQYLLI  254 (325)
Q Consensus       176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~l~s~~~dg~i~i  254 (325)
                      +|...|.+++|+|.+..+|++|+.|+.|++||++....     ......+|...+..++|+|. +..+|++|+.|++|++
T Consensus       138 ~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~i  212 (304)
T 2ynn_A          138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI  212 (304)
T ss_dssp             CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC-----SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEE
T ss_pred             ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc-----cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEE
Confidence            99999999999996544899999999999999987632     12233456678999999873 2368999999999999


Q ss_pred             EEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          255 WDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       255 wd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      ||++++++   +..+.+|...|.+++|+|++.+  +++.|+++++|+.+.
T Consensus       213 Wd~~~~~~---~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~  259 (304)
T 2ynn_A          213 WDYQTKSC---VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (304)
T ss_dssp             EETTTTEE---EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             EeCCCCcc---ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            99999874   8889999999999999999874  899999999999754

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.96  E-value=7.6e-28  Score=208.87  Aligned_cols=222  Identities=18%  Similarity=0.174  Sum_probs=180.5

Q ss_pred             hhhHHHHhhhHhcChhH--HHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCC
Q 020480           15 RLINEEYKIWKKNTPFL--YDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDS   92 (325)
Q Consensus        15 ~~~~~~~~iw~~~~~~~--y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~   92 (325)
                      ...|.++|+|+.+.+.+  ...+..|..  ++.+++|.|+..          .++.++.     +..|.+|++.      
T Consensus        54 gs~D~~v~vW~~~~~~~~~~~~l~gh~~--~v~~~~~~~~~~----------~l~s~s~-----D~~i~lWd~~------  110 (321)
T 3ow8_A           54 GSLDDLVKVWKWRDERLDLQWSLEGHQL--GVVSVDISHTLP----------IAASSSL-----DAHIRLWDLE------  110 (321)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSS--CEEEEEECSSSS----------EEEEEET-----TSEEEEEETT------
T ss_pred             EcCCCCEEEEECCCCCeeeeeeeccCCC--CEEEEEECCCCC----------EEEEEeC-----CCcEEEEECC------
Confidence            34678899999876542  223444544  488999998764          3444443     3478888652      


Q ss_pred             CcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE
Q 020480           93 ENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL  172 (325)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~  172 (325)
                                          .++ .......|...+.+++|+|++ .+|++|+.+|.|++|++..          .....
T Consensus       111 --------------------~~~-~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~----------~~~~~  158 (321)
T 3ow8_A          111 --------------------NGK-QIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVES----------GKKEY  158 (321)
T ss_dssp             --------------------TTE-EEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTT----------CSEEE
T ss_pred             --------------------CCC-EEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCC----------CceeE
Confidence                                111 222334688899999999998 7999999999999999987          34466


Q ss_pred             EEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcE
Q 020480          173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL  252 (325)
Q Consensus       173 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i  252 (325)
                      .+..|...+.+++|+|++. +|++|+.||.|++||++++      .++..+.+|...|.+++|+|++ .+|++|+.|+.|
T Consensus       159 ~~~~~~~~v~~~~~spdg~-~lasg~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~spd~-~~l~s~s~dg~i  230 (321)
T 3ow8_A          159 SLDTRGKFILSIAYSPDGK-YLASGAIDGIINIFDIATG------KLLHTLEGHAMPIRSLTFSPDS-QLLVTASDDGYI  230 (321)
T ss_dssp             EEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT------EEEEEECCCSSCCCEEEECTTS-CEEEEECTTSCE
T ss_pred             EecCCCceEEEEEECCCCC-EEEEEcCCCeEEEEECCCC------cEEEEEcccCCceeEEEEcCCC-CEEEEEcCCCeE
Confidence            7888999999999999998 8999999999999999876      5677889999999999999987 699999999999


Q ss_pred             EEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          253 LIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       253 ~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      ++||++...   .+..+.+|...|.+++|+|++.+  +++.|+++++|+++.
T Consensus       231 ~iwd~~~~~---~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~  279 (321)
T 3ow8_A          231 KIYDVQHAN---LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT  279 (321)
T ss_dssp             EEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEEECCCcc---eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence            999999887   37888999999999999999984  889999999999753

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.96  E-value=5.8e-28  Score=216.64  Aligned_cols=221  Identities=16%  Similarity=0.175  Sum_probs=182.8

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .|.+++||+..+..+...+..|...  +.+++|.|++.          .++.|+..     ..|.+|++.          
T Consensus       128 ~Dg~i~vwd~~~~~~~~~l~~h~~~--V~~v~~~~~~~----------~l~sgs~D-----~~i~iwd~~----------  180 (410)
T 1vyh_C          128 EDATIKVWDYETGDFERTLKGHTDS--VQDISFDHSGK----------LLASCSAD-----MTIKLWDFQ----------  180 (410)
T ss_dssp             SSSCEEEEETTTCCCCEEECCCSSC--EEEEEECTTSS----------EEEEEETT-----SCCCEEETT----------
T ss_pred             CCCeEEEEECCCCcEEEEEeccCCc--EEEEEEcCCCC----------EEEEEeCC-----CeEEEEeCC----------
Confidence            4678999999887766666666654  88999999764          46566543     357777642          


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG  176 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  176 (325)
                                      ... ......+|...|.+++|+|++ .+|++|+.|+.|++||+..          ...+..+.+
T Consensus       181 ----------------~~~-~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~----------~~~~~~~~~  232 (410)
T 1vyh_C          181 ----------------GFE-CIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQT----------GYCVKTFTG  232 (410)
T ss_dssp             ----------------SSC-EEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTT----------CCEEEEEEC
T ss_pred             ----------------CCc-eeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCC----------CcEEEEEeC
Confidence                            111 112234699999999999988 7999999999999999987          345778899


Q ss_pred             CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCC-----------------
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-----------------  239 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-----------------  239 (325)
                      |...|.++.|+|++. ++++|+.|+.|++||++.+      .+...+.+|...|.+++|+|++                 
T Consensus       233 h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (410)
T 1vyh_C          233 HREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATK------ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG  305 (410)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred             CCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCC------ceeeEecCCCceEEEEEEcCcccccchhhhccccccccC
Confidence            999999999999998 8999999999999999876      4577788999999999999962                 


Q ss_pred             --CcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          240 --EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       240 --~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                        ..+|++|+.|++|++||++++.+   +..+.+|...|++++|+|+|.+  +++.|+++++|+.+.
T Consensus       306 ~~g~~l~sgs~D~~i~iwd~~~~~~---~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~  369 (410)
T 1vyh_C          306 KPGPFLLSGSRDKTIKMWDVSTGMC---LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN  369 (410)
T ss_dssp             --CCEEEEEETTSEEEEEETTTTEE---EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCce---EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence              25899999999999999999874   8888999999999999999985  889999999998753

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.96  E-value=2.4e-27  Score=207.72  Aligned_cols=205  Identities=16%  Similarity=0.229  Sum_probs=165.4

Q ss_pred             CceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEe
Q 020480           43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQI  122 (325)
Q Consensus        43 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (325)
                      +++.++|+|++.          .++.|..     +..|.+|++.-.                        ..........
T Consensus        18 ~v~~l~~sp~g~----------~las~~~-----D~~i~iw~~~~~------------------------~~~~~~~~~~   58 (345)
T 3fm0_A           18 RCWFLAWNPAGT----------LLASCGG-----DRRIRIWGTEGD------------------------SWICKSVLSE   58 (345)
T ss_dssp             CEEEEEECTTSS----------CEEEEET-----TSCEEEEEEETT------------------------EEEEEEEECS
T ss_pred             cEEEEEECCCCC----------EEEEEcC-----CCeEEEEEcCCC------------------------cceeeeeecc
Confidence            588999999875          4555554     347999987511                        0011222224


Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      +|.+.|.+++|+|++ ++||+|+.|+.|++|++..        +....+..+.+|...|.+++|+|++. +|++|+.|+.
T Consensus        59 ~h~~~v~~~~~sp~g-~~l~s~s~D~~v~iw~~~~--------~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~  128 (345)
T 3fm0_A           59 GHQRTVRKVAWSPCG-NYLASASFDATTCIWKKNQ--------DDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKS  128 (345)
T ss_dssp             SCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECC--------C-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             ccCCcEEEEEECCCC-CEEEEEECCCcEEEEEccC--------CCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCe
Confidence            699999999999998 7999999999999999876        33344667889999999999999998 8999999999


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeC
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN  282 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~  282 (325)
                      |++||++....   ..++..+.+|...|.+++|+|++ .+|++|+.|+.|++||++.... .....+.+|...|++++|+
T Consensus       129 v~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~-~~~~~~~~h~~~v~~l~~s  203 (345)
T 3fm0_A          129 VWVWEVDEEDE---YECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDW-VCCATLEGHESTVWSLAFD  203 (345)
T ss_dssp             EEEEEECTTSC---EEEEEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEEC
T ss_pred             EEEEECCCCCC---eEEEEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCE-EEEEEecCCCCceEEEEEC
Confidence            99999986532   13466778899999999999987 6899999999999999987652 1346778999999999999


Q ss_pred             CCCCc--cCCCCceEEeeecc
Q 020480          283 ASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       283 p~~~~--~~~~d~~~~~~~~~  301 (325)
                      |+|.+  +++.|+++++|+..
T Consensus       204 p~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          204 PSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             TTSSEEEEEETTSCEEEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEeccc
Confidence            99984  88999999999853

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.95  E-value=5e-27  Score=205.25  Aligned_cols=222  Identities=19%  Similarity=0.263  Sum_probs=176.2

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .|.+++||+.........+..|..  ++.+++|.|++.          .++.|..     ++.+.+|++.-.        
T Consensus        75 ~Dg~v~iWd~~~~~~~~~~~~~~~--~v~~~~~s~~~~----------~l~s~~~-----d~~v~iw~~~~~--------  129 (340)
T 1got_B           75 QDGKLIIWDSYTTNKVHAIPLRSS--WVMTCAYAPSGN----------YVACGGL-----DNICSIYNLKTR--------  129 (340)
T ss_dssp             TTTEEEEEETTTCCEEEEEECSSS--CEEEEEECTTSS----------EEEEEET-----TCEEEEEETTTC--------
T ss_pred             CCCcEEEEECCCCCcceEeecCCc--cEEEEEECCCCC----------EEEEEeC-----CCeEEEEECccC--------
Confidence            567899999877655444444443  488999999864          4555554     347888865311        


Q ss_pred             CCCCcccCCCCCCCCCCCceE-EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe
Q 020480           97 RHYDDDRSDFGGFGCANGKVQ-IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR  175 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  175 (325)
                                      .+... .....+|.+.|.++.|++++  .+++|+.|+.|++||+..          ...+..+.
T Consensus       130 ----------------~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~----------~~~~~~~~  181 (340)
T 1got_B          130 ----------------EGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIET----------GQQTTTFT  181 (340)
T ss_dssp             ----------------SBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTT----------TEEEEEEC
T ss_pred             ----------------CCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCC----------CcEEEEEc
Confidence                            11122 22345799999999999876  588999999999999987          34567888


Q ss_pred             cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEE
Q 020480          176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW  255 (325)
Q Consensus       176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iw  255 (325)
                      +|...|.+++|+|++. ++++|+.|+.|++||++.+      .+...+.+|...|.+++|+|++ .+|++|+.||+|++|
T Consensus       182 ~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~------~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iw  253 (340)
T 1got_B          182 GHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREG------MCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLF  253 (340)
T ss_dssp             CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTC------SEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEE
T ss_pred             CCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCC------eeEEEEcCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEE
Confidence            9999999999999998 8999999999999999876      4677889999999999999987 699999999999999


Q ss_pred             EccCCCCCCCeeEee--ccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          256 DLRTPSVSKPVQSVV--AHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       256 d~~~~~~~~~~~~~~--~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      |++....   +..+.  .+...|.+++|+|+|.+  +++.|+.+++|+...
T Consensus       254 d~~~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~  301 (340)
T 1got_B          254 DLRADQE---LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             ETTTTEE---EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ECCCCcE---EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc
Confidence            9998763   44443  23457999999999985  889999999998643

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.95  E-value=3.5e-27  Score=202.33  Aligned_cols=234  Identities=16%  Similarity=0.245  Sum_probs=174.0

Q ss_pred             hhHHHHhhhHhcC--hhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480           16 LINEEYKIWKKNT--PFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE   93 (325)
Q Consensus        16 ~~~~~~~iw~~~~--~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~   93 (325)
                      ..|.++|||+.+.  ..+...+..|..  ++.+++|.|....        ..++.|+.     +..+++|++.-      
T Consensus        28 s~D~~v~iw~~~~~~~~~~~~l~gH~~--~V~~v~~s~~~~g--------~~l~s~s~-----D~~v~iWd~~~------   86 (297)
T 2pm7_B           28 SSDKTIKIFEVEGETHKLIDTLTGHEG--PVWRVDWAHPKFG--------TILASCSY-----DGKVMIWKEEN------   86 (297)
T ss_dssp             ETTSCEEEEEBCSSCBCCCEEECCCSS--CEEEEEECCGGGC--------SEEEEEET-----TTEEEEEEBSS------
T ss_pred             eCCCEEEEEecCCCCcEEEEEEccccC--CeEEEEecCCCcC--------CEEEEEcC-----CCEEEEEEcCC------
Confidence            3578899999864  234445556654  5899999874211        24555554     34789997631      


Q ss_pred             cccCCCCcccCCCCCCCCCCCce-EEEEEeccCCCeeEEEecCC--CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCC
Q 020480           94 NDARHYDDDRSDFGGFGCANGKV-QIIQQINHDGEVNRARYMPQ--NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSP  170 (325)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~v~~~~~--~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~  170 (325)
                                          ++. .......|...|.+++|+|+  + .+|++|+.||.|++||++.        .....
T Consensus        87 --------------------~~~~~~~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~--------~~~~~  137 (297)
T 2pm7_B           87 --------------------GRWSQIAVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKE--------NGTTS  137 (297)
T ss_dssp             --------------------SCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCS--------SSCBC
T ss_pred             --------------------CceEEEEEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecC--------CCcee
Confidence                                111 11223469999999999997  5 6999999999999999976        21122


Q ss_pred             cEEEecCCCceEEEEecCCC------------CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecC
Q 020480          171 DLRLRGHSTEGYGLSWSKFK------------EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR  238 (325)
Q Consensus       171 ~~~~~~h~~~v~~l~~~p~~------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  238 (325)
                      ...+.+|...|.+++|+|++            ..+|++|+.|+.|++||++.+...  ......+.+|...|.+++|+|+
T Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~--~~~~~~l~~H~~~V~~v~~sp~  215 (297)
T 2pm7_B          138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPT  215 (297)
T ss_dssp             CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCC
T ss_pred             eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce--EEEEEEecCCCCceEEEEECCC
Confidence            45678999999999999973            238999999999999999875321  1245678899999999999998


Q ss_pred             C--CcEEEEEecCCcEEEEEccCCCCCCCeeEe--eccCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          239 H--EYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VAHQSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       239 ~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      +  ..+||+|+.|++|++||++..........+  ..|...|.+++|+|+|.+  +++.|+++++|+..
T Consensus       216 ~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          216 VLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             CCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            5  479999999999999999875421112223  467889999999999985  78899999999865

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.95  E-value=4.7e-26  Score=195.33  Aligned_cols=207  Identities=16%  Similarity=0.176  Sum_probs=161.9

Q ss_pred             CceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEe
Q 020480           43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQI  122 (325)
Q Consensus        43 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (325)
                      ++.+++|+|++.          .++.|+.     +..+++|++.-.                        ..+. .....
T Consensus        11 ~V~~~~~s~~g~----------~las~s~-----D~~v~iw~~~~~------------------------~~~~-~~~l~   50 (297)
T 2pm7_B           11 MIHDAVMDYYGK----------RMATCSS-----DKTIKIFEVEGE------------------------THKL-IDTLT   50 (297)
T ss_dssp             CEEEEEECTTSS----------EEEEEET-----TSCEEEEEBCSS------------------------CBCC-CEEEC
T ss_pred             ceEEEEECCCCC----------EEEEEeC-----CCEEEEEecCCC------------------------CcEE-EEEEc
Confidence            588999999874          5666654     347889876310                        0011 12345


Q ss_pred             ccCCCeeEEEecCC-CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCC--CCCeEEEEeC
Q 020480          123 NHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF--KEGHLLSGSD  199 (325)
Q Consensus       123 ~h~~~v~~v~~~~~-~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~~l~s~s~  199 (325)
                      +|.+.|++++|++. ..++||+|+.||+|++||+..        +....+..+.+|...|.+++|+|+  +. +|++|+.
T Consensus        51 gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~--------~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~  121 (297)
T 2pm7_B           51 GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN--------GRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASS  121 (297)
T ss_dssp             CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS--------SCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEET
T ss_pred             cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC--------CceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEEC
Confidence            79999999999864 237999999999999999986        434556778899999999999997  66 8999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCC------------CcEEEEEecCCcEEEEEccCCCCC-CCe
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH------------EYLFGSVGDDQYLLIWDLRTPSVS-KPV  266 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~------------~~~l~s~~~dg~i~iwd~~~~~~~-~~~  266 (325)
                      |+.|++||++....    .....+.+|...|.+++|+|++            ..+|++|+.|++|++||++..... ...
T Consensus       122 d~~v~~wd~~~~~~----~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~  197 (297)
T 2pm7_B          122 DGKVSVVEFKENGT----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE  197 (297)
T ss_dssp             TSEEEEEEBCSSSC----BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred             CCcEEEEEecCCCc----eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE
Confidence            99999999987532    1234578899999999999963            258999999999999999976521 124


Q ss_pred             eEeeccCCCeeEEEeCCCC---C--ccCCCCceEEeeecce
Q 020480          267 QSVVAHQSEVGVSILNASF---R--LSHEDTCTCTHRHSRY  302 (325)
Q Consensus       267 ~~~~~h~~~v~~i~~~p~~---~--~~~~~d~~~~~~~~~~  302 (325)
                      ..+.+|...|.+++|+|++   .  ++++.|+++++|+.+.
T Consensus       198 ~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          198 STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence            5678899999999999985   3  3889999999998753

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.95  E-value=6e-27  Score=204.74  Aligned_cols=216  Identities=15%  Similarity=0.170  Sum_probs=168.9

Q ss_pred             hHHHHhhhHhcChh----HHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCC
Q 020480           17 INEEYKIWKKNTPF----LYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDS   92 (325)
Q Consensus        17 ~~~~~~iw~~~~~~----~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~   92 (325)
                      .+..+++|+...+.    +...+..|..  ++..+.|.|+.           .++.++.     +..+.+|++.      
T Consensus       117 ~d~~v~iw~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~-----------~l~s~s~-----d~~i~~wd~~------  172 (340)
T 1got_B          117 LDNICSIYNLKTREGNVRVSRELAGHTG--YLSCCRFLDDN-----------QIVTSSG-----DTTCALWDIE------  172 (340)
T ss_dssp             TTCEEEEEETTTCSBSCEEEEEEECCSS--CEEEEEEEETT-----------EEEEEET-----TSCEEEEETT------
T ss_pred             CCCeEEEEECccCCCcceeEEEecCCCc--cEEEEEECCCC-----------cEEEEEC-----CCcEEEEECC------
Confidence            45678888876532    2222334433  36678888764           3555543     3468888652      


Q ss_pred             CcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE
Q 020480           93 ENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL  172 (325)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~  172 (325)
                                          .++ ......+|.+.|.+++|+|++ .++++|+.||.|++||++.          .....
T Consensus       173 --------------------~~~-~~~~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~----------~~~~~  220 (340)
T 1got_B          173 --------------------TGQ-QTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVRE----------GMCRQ  220 (340)
T ss_dssp             --------------------TTE-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT----------CSEEE
T ss_pred             --------------------CCc-EEEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCC----------CeeEE
Confidence                                112 222345799999999999988 7999999999999999987          34567


Q ss_pred             EEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeee--cCCccEEEEEeecCCCcEEEEEecCC
Q 020480          173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK--VHEGVVEDVAWHLRHEYLFGSVGDDQ  250 (325)
Q Consensus       173 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~l~s~~~dg  250 (325)
                      .+.+|...|.+++|+|++. +|++|+.||.|++||++...      .+..+.  .+...|.+++|+|++ .+|++|+.||
T Consensus       221 ~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~~------~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~d~  292 (340)
T 1got_B          221 TFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQ------ELMTYSHDNIICGITSVSFSKSG-RLLLAGYDDF  292 (340)
T ss_dssp             EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE------EEEEECCTTCCSCEEEEEECTTS-SEEEEEETTS
T ss_pred             EEcCCcCCEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCc------EEEEEccCCcccceEEEEECCCC-CEEEEECCCC
Confidence            8889999999999999998 89999999999999998762      333433  233579999999997 6999999999


Q ss_pred             cEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeee
Q 020480          251 YLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRH  299 (325)
Q Consensus       251 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~  299 (325)
                      .|++||+++..   .+..+.+|..+|.+++|+|+|.+  +++.|+++++|+
T Consensus       293 ~i~vwd~~~~~---~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          293 NCNVWDALKAD---RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEEETTTCC---EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             eEEEEEcccCc---EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            99999999877   47888999999999999999984  899999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.95  E-value=7.1e-26  Score=194.86  Aligned_cols=205  Identities=16%  Similarity=0.181  Sum_probs=164.4

Q ss_pred             hhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCC
Q 020480           35 VITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANG  114 (325)
Q Consensus        35 ~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (325)
                      +..|..  ++.+++|+|++.          .++.|..     +..+.+|++.                          .+
T Consensus         9 ~~~h~~--~V~~~~fsp~~~----------~l~s~~~-----dg~v~lWd~~--------------------------~~   45 (304)
T 2ynn_A            9 FSNRSD--RVKGIDFHPTEP----------WVLTTLY-----SGRVELWNYE--------------------------TQ   45 (304)
T ss_dssp             EEEECS--CEEEEEECSSSS----------EEEEEET-----TSEEEEEETT--------------------------TT
T ss_pred             ecCCCC--ceEEEEECCCCC----------EEEEEcC-----CCcEEEEECC--------------------------CC
Confidence            334544  488999999874          5655554     3478888652                          11


Q ss_pred             ceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeE
Q 020480          115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL  194 (325)
Q Consensus       115 ~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  194 (325)
                       ........|..+|.+++|+|++ ++|++|+.|+.|++||+..          ...+..+.+|...|.+++|+|++. +|
T Consensus        46 -~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~vwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~~-~l  112 (304)
T 2ynn_A           46 -VEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNT----------GEKVVDFEAHPDYIRSIAVHPTKP-YV  112 (304)
T ss_dssp             -EEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTT----------CCEEEEEECCSSCEEEEEECSSSS-EE
T ss_pred             -ceeEEeeccCCcEEEEEEeCCC-CEEEEECCCCEEEEEECCC----------CcEEEEEeCCCCcEEEEEEcCCCC-EE
Confidence             1223345689999999999988 7999999999999999987          355778899999999999999998 89


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC
Q 020480          195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS  274 (325)
Q Consensus       195 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~  274 (325)
                      ++|+.|++|++||++.+.     .....+.+|...|.+++|+|.+..+|++|+.|++|++||++....  .......|..
T Consensus       113 ~sgs~D~~v~lWd~~~~~-----~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~--~~~~~~~~~~  185 (304)
T 2ynn_A          113 LSGSDDLTVKLWNWENNW-----ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQER  185 (304)
T ss_dssp             EEEETTSCEEEEEGGGTT-----EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC--SEEEECCCTT
T ss_pred             EEECCCCeEEEEECCCCc-----chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc--cceeccCCcC
Confidence            999999999999998653     245678899999999999996568999999999999999988764  2333345678


Q ss_pred             CeeEEEeCC--CCC--ccCCCCceEEeeecce
Q 020480          275 EVGVSILNA--SFR--LSHEDTCTCTHRHSRY  302 (325)
Q Consensus       275 ~v~~i~~~p--~~~--~~~~~d~~~~~~~~~~  302 (325)
                      .+..++|+|  ++.  ++++.|+++++|+++.
T Consensus       186 ~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~  217 (304)
T 2ynn_A          186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQT  217 (304)
T ss_dssp             CEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred             cEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence            899999987  444  3899999999999754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.95  E-value=1.1e-26  Score=204.54  Aligned_cols=228  Identities=16%  Similarity=0.216  Sum_probs=169.8

Q ss_pred             HHHHhhhHhcChhHHHHhhh--cCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcc
Q 020480           18 NEEYKIWKKNTPFLYDLVIT--HALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEND   95 (325)
Q Consensus        18 ~~~~~iw~~~~~~~y~~~~~--~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~   95 (325)
                      +.++++|+......-..+..  ....-.+.+++|+|+.           .+++++.     ++.|++|++.-.       
T Consensus        69 d~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~-----------~~l~~s~-----dg~v~lWd~~~~-------  125 (357)
T 4g56_B           69 GGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK-----------GILVASD-----SGAVELWEILEK-------  125 (357)
T ss_dssp             CEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-----------EEEEEET-----TSCEEEC------------
T ss_pred             cCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-----------CEEEEEC-----CCEEEEeecccc-------
Confidence            34456666544332222211  1122348899999975           3555543     246888876411       


Q ss_pred             cCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe
Q 020480           96 ARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR  175 (325)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  175 (325)
                                      ...........+|.+.|++++|+|++ ++|++|+.||.|++||+..          ...+..+.
T Consensus       126 ----------------~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~----------~~~~~~~~  178 (357)
T 4g56_B          126 ----------------ESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQ----------KAVLKSYN  178 (357)
T ss_dssp             -------------------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTT----------TEEEEEEC
T ss_pred             ----------------ceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCC----------CcEEEEEc
Confidence                            00011112346799999999999998 7999999999999999987          45577888


Q ss_pred             cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEE
Q 020480          176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW  255 (325)
Q Consensus       176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iw  255 (325)
                      +|...|.+++|+|++..++++++.||.|++||++.+...    ....+..+...+.+++|+|++..+|++|+.|+.|++|
T Consensus       179 ~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~----~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~w  254 (357)
T 4g56_B          179 AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA----TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLV  254 (357)
T ss_dssp             CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB----CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEE
T ss_pred             CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee----eeeeeccccccccchhhhhcccceEEEeecccceeEE
Confidence            999999999999998778999999999999999987432    1223345677899999999877899999999999999


Q ss_pred             EccCCCCCCCeeEeeccCCCeeEEEeCCCCC-c--cCCCCceEEeeecce
Q 020480          256 DLRTPSVSKPVQSVVAHQSEVGVSILNASFR-L--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       256 d~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~-~--~~~~d~~~~~~~~~~  302 (325)
                      |+++++   .+..+.+|...|++++|+|++. +  +++.|+++++|+++.
T Consensus       255 d~~~~~---~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~  301 (357)
T 4g56_B          255 NIKNPD---SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF  301 (357)
T ss_dssp             ESSCGG---GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred             ECCCCc---EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence            999987   4788899999999999999874 3  788999999998754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.95  E-value=1.3e-25  Score=194.52  Aligned_cols=209  Identities=14%  Similarity=0.136  Sum_probs=168.9

Q ss_pred             HhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCC
Q 020480           34 LVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCAN  113 (325)
Q Consensus        34 ~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (325)
                      .+..|...  +.+++|.|+..         ..++.|+.     +..+++|++.-..                      ..
T Consensus        12 ~l~gH~~~--V~~l~~~~~~~---------~~l~s~s~-----D~~v~~W~~~~~~----------------------~~   53 (319)
T 3frx_A           12 TLEGHNGW--VTSLATSAGQP---------NLLLSASR-----DKTLISWKLTGDD----------------------QK   53 (319)
T ss_dssp             EECCCSSC--EEEEEECSSCT---------TEEEEEET-----TSEEEEEEEEEET----------------------TE
T ss_pred             EEccccce--EEEEEccCCCc---------cEEEEecC-----CccEEEecCCCCC----------------------cc
Confidence            34556544  88999998653         14555553     3489999885110                      00


Q ss_pred             CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCe
Q 020480          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (325)
Q Consensus       114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  193 (325)
                      .........+|...|.+++|+|++ .+|++|+.|++|++||+..          ...+..+.+|...|.+++|+|++. +
T Consensus        54 ~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~v~~wd~~~----------~~~~~~~~~h~~~v~~~~~~~~~~-~  121 (319)
T 3frx_A           54 FGVPVRSFKGHSHIVQDCTLTADG-AYALSASWDKTLRLWDVAT----------GETYQRFVGHKSDVMSVDIDKKAS-M  121 (319)
T ss_dssp             EEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT----------TEEEEEEECCSSCEEEEEECTTSC-E
T ss_pred             ccccceEEeCCcccEEEEEECCCC-CEEEEEeCCCEEEEEECCC----------CCeeEEEccCCCcEEEEEEcCCCC-E
Confidence            012233455799999999999998 7999999999999999987          345678899999999999999998 8


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCC-----CcEEEEEecCCcEEEEEccCCCCCCCeeE
Q 020480          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-----EYLFGSVGDDQYLLIWDLRTPSVSKPVQS  268 (325)
Q Consensus       194 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  268 (325)
                      +++|+.|+.|++||++.       .++..+.+|...|.+++|+|..     ...+++++.|+.|++||++..+   ....
T Consensus       122 l~s~s~D~~i~vwd~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~---~~~~  191 (319)
T 3frx_A          122 IISGSRDKTIKVWTIKG-------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ---IEAD  191 (319)
T ss_dssp             EEEEETTSCEEEEETTS-------CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE---EEEE
T ss_pred             EEEEeCCCeEEEEECCC-------CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch---hhee
Confidence            99999999999999974       3577788999999999999853     2489999999999999999877   3677


Q ss_pred             eeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          269 VVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       269 ~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      +.+|...|++++|+|+|.+  +++.|+++++|+++.
T Consensus       192 ~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~  227 (319)
T 3frx_A          192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA  227 (319)
T ss_dssp             ECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            8899999999999999985  889999999999754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5.5e-27  Score=204.20  Aligned_cols=235  Identities=16%  Similarity=0.185  Sum_probs=169.6

Q ss_pred             hHHHHhhhHhcCh--hHHHHh-hh-cCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCC
Q 020480           17 INEEYKIWKKNTP--FLYDLV-IT-HALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDS   92 (325)
Q Consensus        17 ~~~~~~iw~~~~~--~~y~~~-~~-~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~   92 (325)
                      .+.++|+|+.+..  .+...+ .. |.  -++.+++|.|++.          .++.|+..     ..+.+|++.-+..  
T Consensus        32 ~D~~i~lw~~~~~~~~~~~~~~~~~h~--~~v~~v~~sp~~~----------~las~s~D-----~~v~iw~~~~~~~--   92 (330)
T 2hes_X           32 TDRKIKLVSVKYDDFTLIDVLDETAHK--KAIRSVAWRPHTS----------LLAAGSFD-----STVSIWAKEESAD--   92 (330)
T ss_dssp             SSSCEEEEECSSSCCEEEEEECTTCCC--SCEEEEEECTTSS----------EEEEEETT-----SCEEEEEC-------
T ss_pred             CCCEEEEEEecCCCeEEEEEEecCCcc--CCEEEEEECCCCC----------EEEEEeCC-----CcEEEEEcccCcC--
Confidence            5678999988763  222222 22 33  3588999999864          46666543     4788887631100  


Q ss_pred             CcccCCCCcccCCCCCCCCCCCceEE-EEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCc
Q 020480           93 ENDARHYDDDRSDFGGFGCANGKVQI-IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPD  171 (325)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~  171 (325)
                                         .....+. ....+|.+.|.+++|+|++ ++||+|+.|+.|++||+....      .....+
T Consensus        93 -------------------~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~------~~~~~~  146 (330)
T 2hes_X           93 -------------------RTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESG------EEYECI  146 (330)
T ss_dssp             ---------------------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTC------CCCEEE
T ss_pred             -------------------ccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCC------CCeEEE
Confidence                               0011122 2345799999999999998 799999999999999995410      112345


Q ss_pred             EEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCC-CcEEEEEecCC
Q 020480          172 LRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQ  250 (325)
Q Consensus       172 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~s~~~dg  250 (325)
                      ..+.+|...|.+++|+|++. +|++|+.|++|++||.+.+..    .++..+.+|...|.+++|+|++ ...|++|+.|+
T Consensus       147 ~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~  221 (330)
T 2hes_X          147 SVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDW----ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS  221 (330)
T ss_dssp             EEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEE----EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS
T ss_pred             EEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCe----eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC
Confidence            67889999999999999988 899999999999999875421    3577888999999999999973 25899999999


Q ss_pred             cEEEEEccCCCCC-----CCeeEeec-cCCCeeEEEeCCCCCc-cCCCCceEEeeecc
Q 020480          251 YLLIWDLRTPSVS-----KPVQSVVA-HQSEVGVSILNASFRL-SHEDTCTCTHRHSR  301 (325)
Q Consensus       251 ~i~iwd~~~~~~~-----~~~~~~~~-h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~~  301 (325)
                      +|++||++.....     .....+.. |...|.+++|++++.+ +++.|+++++|+..
T Consensus       222 ~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~  279 (330)
T 2hes_X          222 TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEV  279 (330)
T ss_dssp             CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEE
T ss_pred             eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcC
Confidence            9999999865311     01333333 8999999999988865 88999999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.8e-26  Score=198.24  Aligned_cols=170  Identities=19%  Similarity=0.290  Sum_probs=134.9

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      |.+.|.+++|+|++ .+||+|+.|+.|++|++.......   .....+..+.+|...|.+++|+|++. +|++|+.|++|
T Consensus        57 h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~~~~~---~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v  131 (330)
T 2hes_X           57 HKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEESADRT---FEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSV  131 (330)
T ss_dssp             CCSCEEEEEECTTS-SEEEEEETTSCEEEEEC----------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCE
T ss_pred             ccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccCcCcc---ccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEE
Confidence            99999999999998 799999999999999986411000   11234567889999999999999998 89999999999


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCC
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNA  283 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p  283 (325)
                      ++||++.....  ..++..+.+|...|.+++|+|++ .+|++|+.|++|++||++... ..++..+.+|...|.+++|+|
T Consensus       132 ~iwd~~~~~~~--~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~-~~~~~~~~~h~~~v~~~~~~~  207 (330)
T 2hes_X          132 WIWETDESGEE--YECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDD-WECVAVLNGHEGTVWSSDFDK  207 (330)
T ss_dssp             EEEECCTTCCC--CEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECC
T ss_pred             EEEeccCCCCC--eEEEEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCC-eeEEEEccCCCCcEEEEEecC
Confidence            99999643211  13567788999999999999987 699999999999999998763 114778889999999999999


Q ss_pred             C--CC--ccCCCCceEEeeecce
Q 020480          284 S--FR--LSHEDTCTCTHRHSRY  302 (325)
Q Consensus       284 ~--~~--~~~~~d~~~~~~~~~~  302 (325)
                      +  +.  ++++.|+++++|+++.
T Consensus       208 ~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          208 TEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             SSSSCEEEEEETTSCEEEEEEEE
T ss_pred             CCCeeEEEEEeCCCeEEEEEecC
Confidence            8  43  3889999999998754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.95  E-value=6.6e-27  Score=207.64  Aligned_cols=249  Identities=13%  Similarity=0.148  Sum_probs=179.7

Q ss_pred             hhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCC-----
Q 020480           16 LINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLD-----   90 (325)
Q Consensus        16 ~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~-----   90 (325)
                      ..|.+++||+..+......+..|..  ++.+++|.|++.          .++.|..     +..+.+|++.-...     
T Consensus        85 s~D~~v~iWd~~~~~~~~~~~~h~~--~v~~~~~s~~g~----------~las~~~-----d~~v~iw~~~~~~~~~~~~  147 (380)
T 3iz6_a           85 SQDGRLIVWNALTSQKTHAIKLHCP--WVMECAFAPNGQ----------SVACGGL-----DSACSIFNLSSQADRDGNM  147 (380)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCCT--TCCCCEECTTSS----------EEEECCS-----SSCCEEEECCCCSSCCCSS
T ss_pred             eCCCeEEEEECCCCccceEEecCCC--CEEEEEECCCCC----------EEEEeeC-----CCcEEEEECCCCccccCCc
Confidence            3577899999877665555555543  378899999874          3444332     34566776531100     


Q ss_pred             -------CCC--cccCCCC----------cccCCCCCCCCCCCceEEEEE----eccCCCeeEEEecCCCCcEEEEEecC
Q 020480           91 -------DSE--NDARHYD----------DDRSDFGGFGCANGKVQIIQQ----INHDGEVNRARYMPQNPFLIATKTVS  147 (325)
Q Consensus        91 -------~~~--~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~v~~~~~~~~~la~g~~d  147 (325)
                             ...  ...-.+.          ..++.+..|+...++......    .+|...|.++.|++.+.++|++|+.|
T Consensus       148 ~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D  227 (380)
T 3iz6_a          148 PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD  227 (380)
T ss_dssp             TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT
T ss_pred             cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC
Confidence                   000  0000000          112344455555544322111    35889999999998555899999999


Q ss_pred             CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecC-
Q 020480          148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH-  226 (325)
Q Consensus       148 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-  226 (325)
                      |.|++||++.         ....+..+.+|...|.+++|+|++. +|++|+.||+|++||++.+      ..+..+..+ 
T Consensus       228 ~~v~~wd~~~---------~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~------~~~~~~~~~~  291 (380)
T 3iz6_a          228 TTVRLWDLRI---------TSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTG------HQLQVYNREP  291 (380)
T ss_dssp             SCEEEEETTT---------TCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTT------EEEEEECCCC
T ss_pred             CeEEEEECCC---------CCcceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCC------cEEEEecccc
Confidence            9999999974         1345778899999999999999998 8999999999999999987      334444332 


Q ss_pred             ------CccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe----eccCCCeeEEEeCCCCCc--cCCCCce
Q 020480          227 ------EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV----VAHQSEVGVSILNASFRL--SHEDTCT  294 (325)
Q Consensus       227 ------~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~i~~~p~~~~--~~~~d~~  294 (325)
                            ...|.+++|+|++ .++++|+.||.|++||+..++.   +..+    .+|...|++++|+|+|.+  +++.|++
T Consensus       292 ~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~  367 (380)
T 3iz6_a          292 DRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEM---VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN  367 (380)
T ss_dssp             SSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCCE---EEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred             cccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCce---EEEEecccCCCCCceEEEEECCCCCEEEEeeCCCC
Confidence                  2348999999997 6999999999999999988774   5444    579999999999999985  8999999


Q ss_pred             EEeeecc
Q 020480          295 CTHRHSR  301 (325)
Q Consensus       295 ~~~~~~~  301 (325)
                      +++|++.
T Consensus       368 i~iW~~~  374 (380)
T 3iz6_a          368 LKIWAFS  374 (380)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            9999864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.95  E-value=4.9e-27  Score=212.15  Aligned_cols=201  Identities=14%  Similarity=0.235  Sum_probs=159.3

Q ss_pred             ceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEec
Q 020480           44 SLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQIN  123 (325)
Q Consensus        44 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (325)
                      +.+++|.|....         .++.|+..     ..|.+|++...                         .........+
T Consensus       122 V~~l~~~P~~~~---------~lasGs~d-----g~i~lWd~~~~-------------------------~~~~~~~~~g  162 (435)
T 4e54_B          122 ATSLAWHPTHPS---------TVAVGSKG-----GDIMLWNFGIK-------------------------DKPTFIKGIG  162 (435)
T ss_dssp             EEEEEECSSCTT---------CEEEEETT-----SCEEEECSSCC-------------------------SCCEEECCCS
T ss_pred             EEEEEEeCCCCC---------EEEEEeCC-----CEEEEEECCCC-------------------------CceeEEEccC
Confidence            788999996542         36666643     36888865311                         1223334567


Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe---cCCCceEEEEecCCCCCeEEEEeCC
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR---GHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      |.+.|++|+|+|.+.++|++|+.||+|++||+..           .....+.   .+...+.+++|+|++. +|++|+.|
T Consensus       163 H~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~d  230 (435)
T 4e54_B          163 AGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-----------NILRVFASSDTINIWFCSLDVSASSR-MVVTGDNV  230 (435)
T ss_dssp             SSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS-----------CEEEEEECCSSCSCCCCCEEEETTTT-EEEEECSS
T ss_pred             CCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC-----------CceeEEeccCCCCccEEEEEECCCCC-EEEEEeCC
Confidence            9999999999996558999999999999999976           1122232   3345678999999998 89999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      |.|++||++..       .+..+.+|...|.+++|+|++..++++|+.|++|++||++..+....+....+|..+|++++
T Consensus       231 g~i~~wd~~~~-------~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~  303 (435)
T 4e54_B          231 GNVILLNMDGK-------ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC  303 (435)
T ss_dssp             SBEEEEESSSC-------BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECC
T ss_pred             CcEeeeccCcc-------eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecccccccee
Confidence            99999999753       45567889999999999999888999999999999999998775444455578999999999


Q ss_pred             eCCCCCc--cCCCCceEEeeecce
Q 020480          281 LNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       281 ~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      |+|+|.+  +++.|+++++|+++.
T Consensus       304 ~spdg~~l~s~~~D~~i~iwd~~~  327 (435)
T 4e54_B          304 FSPDGARLLTTDQKSEIRVYSASQ  327 (435)
T ss_dssp             BCTTSSEEEEEESSSCEEEEESSS
T ss_pred             ECCCCCeeEEEcCCCEEEEEECCC
Confidence            9999984  889999999998754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.95  E-value=1.1e-26  Score=206.14  Aligned_cols=212  Identities=19%  Similarity=0.301  Sum_probs=166.9

Q ss_pred             hhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCC
Q 020480           35 VITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANG  114 (325)
Q Consensus        35 ~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (325)
                      +..|..  ++.+++|+|++.          .++.|+.     +..+.+|++.                          .+
T Consensus        62 l~gH~~--~V~~~~~sp~~~----------~l~s~s~-----D~~v~iWd~~--------------------------~~   98 (380)
T 3iz6_a           62 LQGHSG--KVYSLDWTPEKN----------WIVSASQ-----DGRLIVWNAL--------------------------TS   98 (380)
T ss_dssp             ECCCSS--CEEEEEECTTSS----------CEEEEET-----TSEEEEEETT--------------------------TT
T ss_pred             cccccc--EEEEEEEcCCCC----------EEEEEeC-----CCeEEEEECC--------------------------CC
Confidence            444543  488999999764          4555554     3478888642                          11


Q ss_pred             ceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeE
Q 020480          115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL  194 (325)
Q Consensus       115 ~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  194 (325)
                      + .......|...|.+++|+|++ .+||+|+.|+.|++|++.......   +.......+.+|.+.+.++.|+|++...|
T Consensus        99 ~-~~~~~~~h~~~v~~~~~s~~g-~~las~~~d~~v~iw~~~~~~~~~---~~~~~~~~~~gh~~~v~~~~~~~~~~~~l  173 (380)
T 3iz6_a           99 Q-KTHAIKLHCPWVMECAFAPNG-QSVACGGLDSACSIFNLSSQADRD---GNMPVSRVLTGHKGYASSCQYVPDQETRL  173 (380)
T ss_dssp             E-EEEEEECCCTTCCCCEECTTS-SEEEECCSSSCCEEEECCCCSSCC---CSSTTCCBCCCCSSCCCCCBCCSSSSSCE
T ss_pred             c-cceEEecCCCCEEEEEECCCC-CEEEEeeCCCcEEEEECCCCcccc---CCccceeeccCCCcceEEEEEecCCCCEE
Confidence            1 223345799999999999998 799999999999999997532111   22233456789999999999999876689


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceEee-----ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe
Q 020480          195 LSGSDDAQICLWDINAAPKNKSLEAMQIF-----KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV  269 (325)
Q Consensus       195 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  269 (325)
                      ++|+.|++|++||++++.      .+..+     .+|...|.+++|+|.+..+|++|+.|++|++||++....  ++..+
T Consensus       174 ~s~s~D~~i~~wd~~~~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~--~~~~~  245 (380)
T 3iz6_a          174 ITGSGDQTCVLWDVTTGQ------RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR--AVRTY  245 (380)
T ss_dssp             EEECTTSCEEEECTTTCC------EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC--CCEEE
T ss_pred             EEECCCCcEEEEEcCCCc------EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc--ceEEE
Confidence            999999999999999873      34444     578899999999885568999999999999999986543  57888


Q ss_pred             eccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          270 VAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       270 ~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      .+|...|++++|+|++.+  +++.|+++++|+++.
T Consensus       246 ~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~  280 (380)
T 3iz6_a          246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT  280 (380)
T ss_dssp             CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT
T ss_pred             CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC
Confidence            999999999999999984  899999999999864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.95  E-value=7e-26  Score=199.13  Aligned_cols=226  Identities=16%  Similarity=0.171  Sum_probs=174.1

Q ss_pred             hhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcc
Q 020480           16 LINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEND   95 (325)
Q Consensus        16 ~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~   95 (325)
                      ..|.++++|+.........+..+.  -.+.+++|.|++.          .++.|..     ++.+.++.+.......   
T Consensus        83 s~Dg~v~vWd~~~~~~~~~~~~~~--~~v~~~~~sp~g~----------~lasg~~-----d~~i~v~~~~~~~~~~---  142 (354)
T 2pbi_B           83 SQDGKVIVWDSFTTNKEHAVTMPC--TWVMACAYAPSGC----------AIACGGL-----DNKCSVYPLTFDKNEN---  142 (354)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECSS--SCCCEEEECTTSS----------EEEEEST-----TSEEEEEECCCCTTCC---
T ss_pred             eCCCeEEEEECCCCCcceEEecCC--CCEEEEEECCCCC----------EEEEeeC-----CCCEEEEEEecccccc---
Confidence            356789999876654433333333  2478999999874          4555443     4578888764221000   


Q ss_pred             cCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe
Q 020480           96 ARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR  175 (325)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  175 (325)
                                      .....  .....|.+.|.+++|+|++ ..|++|+.||+|++||+..          ...+..+.
T Consensus       143 ----------------~~~~~--~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~----------~~~~~~~~  193 (354)
T 2pbi_B          143 ----------------MAAKK--KSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVES----------GQLLQSFH  193 (354)
T ss_dssp             ----------------SGGGC--EEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTT----------CCEEEEEE
T ss_pred             ----------------ccccc--eeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCC----------CeEEEEEc
Confidence                            00111  1234799999999999988 6899999999999999987          35577889


Q ss_pred             cCCCceEEEEecCC--CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEE
Q 020480          176 GHSTEGYGLSWSKF--KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL  253 (325)
Q Consensus       176 ~h~~~v~~l~~~p~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~  253 (325)
                      +|...|.+++|+|.  +. +|++|+.||.|++||++++      .++..+.+|...|++++|+|++ .+|++|+.|++|+
T Consensus       194 ~h~~~v~~~~~~~~~~g~-~l~sgs~Dg~v~~wd~~~~------~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~  265 (354)
T 2pbi_B          194 GHGADVLCLDLAPSETGN-TFVSGGCDKKAMVWDMRSG------QCVQAFETHESDVNSVRYYPSG-DAFASGSDDATCR  265 (354)
T ss_dssp             CCSSCEEEEEECCCSSCC-EEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred             CCCCCeEEEEEEeCCCCC-EEEEEeCCCeEEEEECCCC------cEEEEecCCCCCeEEEEEeCCC-CEEEEEeCCCeEE
Confidence            99999999999885  44 8999999999999999987      4677889999999999999987 6999999999999


Q ss_pred             EEEccCCCCCCCeeEeec--cCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          254 IWDLRTPSVSKPVQSVVA--HQSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       254 iwd~~~~~~~~~~~~~~~--h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      +||++....   +..+..  +...+.+++|+|+|.+  +++.|+++++|+++
T Consensus       266 lwd~~~~~~---~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~  314 (354)
T 2pbi_B          266 LYDLRADRE---VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL  314 (354)
T ss_dssp             EEETTTTEE---EEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEECCCCcE---EEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECC
Confidence            999998763   444433  3457899999999985  78899999999874

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.94  E-value=5.3e-26  Score=196.77  Aligned_cols=212  Identities=17%  Similarity=0.162  Sum_probs=162.0

Q ss_pred             hhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCc
Q 020480           36 ITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGK  115 (325)
Q Consensus        36 ~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (325)
                      ..|..  ++.+++|.|++.          .++.|+.     +..+++|++.-                          +.
T Consensus        10 ~~H~~--~V~~v~~s~~g~----------~lasgs~-----D~~v~lwd~~~--------------------------~~   46 (316)
T 3bg1_A           10 TSHED--MIHDAQMDYYGT----------RLATCSS-----DRSVKIFDVRN--------------------------GG   46 (316)
T ss_dssp             ----C--CEEEEEECGGGC----------EEEEEET-----TTEEEEEEEET--------------------------TE
T ss_pred             ccccC--eEEEeeEcCCCC----------EEEEEeC-----CCeEEEEEecC--------------------------CC
Confidence            34544  488999999874          5666654     34899998751                          12


Q ss_pred             e-EEEEEeccCCCeeEEEecCC-CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCC--CC
Q 020480          116 V-QIIQQINHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF--KE  191 (325)
Q Consensus       116 ~-~~~~~~~h~~~v~~v~~~~~-~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~  191 (325)
                      . ......+|.+.|++++|++. ..++|++|+.|++|++||+..        +.......+.+|...|.+++|+|+  +.
T Consensus        47 ~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~--------~~~~~~~~~~~h~~~V~~v~~~p~~~g~  118 (316)
T 3bg1_A           47 QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN--------GTWEKSHEHAGHDSSVNSVCWAPHDYGL  118 (316)
T ss_dssp             EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS--------SCCCEEEEECCCSSCCCEEEECCTTTCS
T ss_pred             cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC--------CcceEEEEccCCCCceEEEEECCCCCCc
Confidence            2 22345579999999999863 237999999999999999986        333456678899999999999998  55


Q ss_pred             CeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCC----------------CcEEEEEecCCcEEEE
Q 020480          192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH----------------EYLFGSVGDDQYLLIW  255 (325)
Q Consensus       192 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~----------------~~~l~s~~~dg~i~iw  255 (325)
                       +|++|+.|+.|++||++....   ......+.+|...|.+++|+|+.                ..+|++|+.|++|++|
T Consensus       119 -~lasgs~D~~i~lwd~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lW  194 (316)
T 3bg1_A          119 -ILACGSSDGAISLLTYTGEGQ---WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW  194 (316)
T ss_dssp             -CEEEECSSSCEEEEEECSSSC---EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEE
T ss_pred             -EEEEEcCCCCEEEEecCCCCC---cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEE
Confidence             899999999999999986522   01234557899999999999973                2589999999999999


Q ss_pred             EccCCCCCCCeeEeeccCCCeeEEEeCCCC----C--ccCCCCceEEeeecce
Q 020480          256 DLRTPSVSKPVQSVVAHQSEVGVSILNASF----R--LSHEDTCTCTHRHSRY  302 (325)
Q Consensus       256 d~~~~~~~~~~~~~~~h~~~v~~i~~~p~~----~--~~~~~d~~~~~~~~~~  302 (325)
                      |++......++..+.+|...|.+++|+|++    .  ++++.|+++++|++..
T Consensus       195 d~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          195 KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             EECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             EeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence            997653222466778999999999999986    3  3899999999998653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.94  E-value=7.1e-26  Score=201.89  Aligned_cols=226  Identities=18%  Similarity=0.304  Sum_probs=175.0

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.++++|+.....+...+..|..  ++.+++|.|++.          .++.++.     +..+.+|++.          
T Consensus       143 ~d~~i~iwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~----------~l~s~s~-----d~~v~iwd~~----------  195 (393)
T 1erj_A          143 EDRLIRIWDIENRKIVMILQGHEQ--DIYSLDYFPSGD----------KLVSGSG-----DRTVRIWDLR----------  195 (393)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSS----------EEEEEET-----TSEEEEEETT----------
T ss_pred             CCCeEEEEECCCCcEEEEEccCCC--CEEEEEEcCCCC----------EEEEecC-----CCcEEEEECC----------
Confidence            568899999988766656666654  488999999874          4555554     3478888652          


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE--
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL--  174 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~--  174 (325)
                                      .++  ....+.+...+.+++|+|.+..+|++|+.||.|++||+..        +  ..+..+  
T Consensus       196 ----------------~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~--------~--~~~~~~~~  247 (393)
T 1erj_A          196 ----------------TGQ--CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET--------G--FLVERLDS  247 (393)
T ss_dssp             ----------------TTE--EEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT--------C--CEEEEEC-
T ss_pred             ----------------CCe--eEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC--------C--cEEEeecc
Confidence                            122  2334567788999999994447999999999999999976        2  223333  


Q ss_pred             -----ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCC------cccceEeeecCCccEEEEEeecCCCcEE
Q 020480          175 -----RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK------SLEAMQIFKVHEGVVEDVAWHLRHEYLF  243 (325)
Q Consensus       175 -----~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~------~~~~~~~~~~~~~~v~~v~~~p~~~~~l  243 (325)
                           .+|...|++++|+|++. +|++|+.|+.|++||++......      ...+...+.+|...|.+++|+|++ .+|
T Consensus       248 ~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l  325 (393)
T 1erj_A          248 ENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYI  325 (393)
T ss_dssp             -----CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEE
T ss_pred             cccCCCCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC-CEE
Confidence                 57999999999999998 89999999999999998643210      113456678899999999999987 699


Q ss_pred             EEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCC------CCC--ccCCCCceEEeeecce
Q 020480          244 GSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNA------SFR--LSHEDTCTCTHRHSRY  302 (325)
Q Consensus       244 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p------~~~--~~~~~d~~~~~~~~~~  302 (325)
                      ++|+.|+.|++||+++++   ++..+.+|...|.+++|++      ++.  ++++.|+++++|+...
T Consensus       326 ~sgs~D~~v~iwd~~~~~---~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          326 LSGSKDRGVLFWDKKSGN---PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCe---EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            999999999999999987   4888899999999999987      344  3889999999998754

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.94  E-value=4e-26  Score=214.83  Aligned_cols=220  Identities=14%  Similarity=0.117  Sum_probs=176.3

Q ss_pred             HHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccC
Q 020480           18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDAR   97 (325)
Q Consensus        18 ~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~   97 (325)
                      +.++++|+...+.....+..|...  +.+++|+|++.          .++.|+.     +..+.+|++.-.         
T Consensus        38 ~~~v~l~~~~~~~~~~~~~~h~~~--v~~~~~spdg~----------~lasg~~-----d~~v~lWd~~~~---------   91 (611)
T 1nr0_A           38 GTSVYTVPVGSLTDTEIYTEHSHQ--TTVAKTSPSGY----------YCASGDV-----HGNVRIWDTTQT---------   91 (611)
T ss_dssp             TTEEEEEETTCSSCCEEECCCSSC--EEEEEECTTSS----------EEEEEET-----TSEEEEEESSST---------
T ss_pred             CCEEEEecCCCcccCeEecCCCCc--eEEEEECCCCc----------EEEEEeC-----CCCEEEeECCCC---------
Confidence            357899998877777677777654  89999999874          5666654     347999975310         


Q ss_pred             CCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecC----CeEEEEeCCCCCCCCCCCCCCCCcEE
Q 020480           98 HYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVS----AEVYVFDYSKHPSKPPLDGACSPDLR  173 (325)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~d----g~v~vwd~~~~~~~~~~~~~~~~~~~  173 (325)
                                     .. ........|.+.|.+++|+|++ ..||+++.+    +.|++||...            ....
T Consensus        92 ---------------~~-~~~~~~~~~~~~v~~v~fs~dg-~~l~~~~~~~~~~~~v~~wd~~~------------~~~~  142 (611)
T 1nr0_A           92 ---------------TH-ILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGT------------SNGN  142 (611)
T ss_dssp             ---------------TC-CEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCC------------BCBC
T ss_pred             ---------------cc-eeeEeecccCCceEEEEECCCC-CEEEEEECCCCceeEEEEeeCCC------------Ccce
Confidence                           11 1222345799999999999999 577777654    4788888543            2445


Q ss_pred             EecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEE
Q 020480          174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL  253 (325)
Q Consensus       174 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~  253 (325)
                      +.+|...|.+++|+|++...|++|+.|++|++||....      .+...+.+|...|.+++|+|++ .+||+|+.|++|+
T Consensus       143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~------~~~~~l~~H~~~V~~v~fspdg-~~las~s~D~~i~  215 (611)
T 1nr0_A          143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF------KFKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIV  215 (611)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB------EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred             ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC------eEeeeeccccCceEEEEECCCC-CEEEEEECCCcEE
Confidence            78999999999999998757999999999999998765      4577889999999999999997 6999999999999


Q ss_pred             EEEccCCCCCCCeeEee-------ccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          254 IWDLRTPSVSKPVQSVV-------AHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       254 iwd~~~~~~~~~~~~~~-------~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      +||+++++.   +..+.       +|...|.+++|+|+|.+  +++.|+++++|+++.
T Consensus       216 lwd~~~g~~---~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~  270 (611)
T 1nr0_A          216 LYNGVDGTK---TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT  270 (611)
T ss_dssp             EEETTTCCE---EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEECCCCcE---eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence            999998874   55553       79999999999999984  889999999999753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=4.3e-25  Score=191.72  Aligned_cols=225  Identities=12%  Similarity=0.104  Sum_probs=168.5

Q ss_pred             HhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCC
Q 020480           34 LVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCAN  113 (325)
Q Consensus        34 ~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (325)
                      .+..|..  ++.+++|.|++.          .++.|..     +..|.+|++.-.                        .
T Consensus         6 ~~~gH~~--~v~~~~~~~~~~----------~l~~~~~-----dg~i~iw~~~~~------------------------~   44 (351)
T 3f3f_A            6 FDSGHDD--LVHDVVYDFYGR----------HVATCSS-----DQHIKVFKLDKD------------------------T   44 (351)
T ss_dssp             EECCCSS--CEEEEEECSSSS----------EEEEEET-----TSEEEEEEECSS------------------------S
T ss_pred             cCccccc--ceeEEEEcCCCC----------EEEEeeC-----CCeEEEEECCCC------------------------C
Confidence            3445554  489999999764          4666653     348999988411                        1


Q ss_pred             CceEEE-EEeccCCCeeEEEecCC--CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCC-
Q 020480          114 GKVQII-QQINHDGEVNRARYMPQ--NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF-  189 (325)
Q Consensus       114 ~~~~~~-~~~~h~~~v~~v~~~~~--~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-  189 (325)
                      ...+.. ....|.+.|++++|+|.  + .+|++|+.||.|++||+........ .....++..+.+|...|.+++|+|+ 
T Consensus        45 ~~~~~~~~~~~~~~~v~~~~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~  122 (351)
T 3f3f_A           45 SNWELSDSWRAHDSSIVAIDWASPEYG-RIIASASYDKTVKLWEEDPDQEECS-GRRWNKLCTLNDSKGSLYSVKFAPAH  122 (351)
T ss_dssp             CCEEEEEEEECCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEECTTSCTTS-SCSEEEEEEECCCSSCEEEEEECCGG
T ss_pred             CcceecceeccCCCcEEEEEEcCCCCC-CEEEEEcCCCeEEEEecCCCccccc-ccCcceeeeecccCCceeEEEEcCCC
Confidence            222333 33469999999999994  5 7999999999999999986211100 0011336677899999999999999 


Q ss_pred             -CCCeEEEEeCCCcEEEEeCCCCCCCCcc---------------------------------------------------
Q 020480          190 -KEGHLLSGSDDAQICLWDINAAPKNKSL---------------------------------------------------  217 (325)
Q Consensus       190 -~~~~l~s~s~dg~i~iwd~~~~~~~~~~---------------------------------------------------  217 (325)
                       +. ++++++.||.|++||++.+.....+                                                   
T Consensus       123 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~  201 (351)
T 3f3f_A          123 LGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD  201 (351)
T ss_dssp             GCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT
T ss_pred             CCc-EEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC
Confidence             77 8999999999999999876432111                                                   


Q ss_pred             ---cceEeeecCCccEEEEEeecCCC---cEEEEEecCCcEEEEEccCCCC-----------------------------
Q 020480          218 ---EAMQIFKVHEGVVEDVAWHLRHE---YLFGSVGDDQYLLIWDLRTPSV-----------------------------  262 (325)
Q Consensus       218 ---~~~~~~~~~~~~v~~v~~~p~~~---~~l~s~~~dg~i~iwd~~~~~~-----------------------------  262 (325)
                         ..+..+.+|...|.+++|+|++.   .+|++|+.||.|++||++....                             
T Consensus       202 ~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (351)
T 3f3f_A          202 GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSD  281 (351)
T ss_dssp             SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------
T ss_pred             CceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccc
Confidence               12455667999999999999863   6899999999999999987521                             


Q ss_pred             --------------CCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          263 --------------SKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       263 --------------~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                                    ...+..+.+|...|++++|+|++.+  +++.|+.+++|++..
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          282 SNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY  337 (351)
T ss_dssp             ---------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             cccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence                          0235566789999999999999985  889999999998764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.94  E-value=1.2e-24  Score=191.29  Aligned_cols=203  Identities=19%  Similarity=0.259  Sum_probs=165.3

Q ss_pred             CceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEe
Q 020480           43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQI  122 (325)
Q Consensus        43 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (325)
                      ++.+++|.|++.          .++.|+.     +..+.+|+..                          .++. .....
T Consensus        66 ~V~~~~~s~d~~----------~l~s~s~-----Dg~v~vWd~~--------------------------~~~~-~~~~~  103 (354)
T 2pbi_B           66 KVLCMDWCKDKR----------RIVSSSQ-----DGKVIVWDSF--------------------------TTNK-EHAVT  103 (354)
T ss_dssp             CEEEEEECTTSS----------EEEEEET-----TSEEEEEETT--------------------------TCCE-EEEEE
T ss_pred             eEEEEEECCCCC----------EEEEEeC-----CCeEEEEECC--------------------------CCCc-ceEEe
Confidence            588999998763          5666654     3478888642                          1111 12234


Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      .|...|.+++|+|++ ..+|+|+.|+.+++|++......    ........+.+|...|.+++|+|++. .|++++.|++
T Consensus       104 ~~~~~v~~~~~sp~g-~~lasg~~d~~i~v~~~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~  177 (354)
T 2pbi_B          104 MPCTWVMACAYAPSG-CAIACGGLDNKCSVYPLTFDKNE----NMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGT  177 (354)
T ss_dssp             CSSSCCCEEEECTTS-SEEEEESTTSEEEEEECCCCTTC----CSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSE
T ss_pred             cCCCCEEEEEECCCC-CEEEEeeCCCCEEEEEEeccccc----cccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCc
Confidence            588899999999998 79999999999999998752111    11234567789999999999999988 8999999999


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCC-CcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEe
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL  281 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~  281 (325)
                      |++||++.+      .++..+.+|...|.+++|+|.. ..+|++|+.||.|++||++++++   +..+.+|...|++++|
T Consensus       178 v~lwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~---~~~~~~h~~~v~~v~~  248 (354)
T 2pbi_B          178 CALWDVESG------QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC---VQAFETHESDVNSVRY  248 (354)
T ss_dssp             EEEEETTTC------CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE---EEEECCCSSCEEEEEE
T ss_pred             EEEEeCCCC------eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE---EEEecCCCCCeEEEEE
Confidence            999999887      4678889999999999998852 36999999999999999999874   8888999999999999


Q ss_pred             CCCCCc--cCCCCceEEeeecce
Q 020480          282 NASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       282 ~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      +|++.+  +++.|+++++|+++.
T Consensus       249 ~p~~~~l~s~s~D~~v~lwd~~~  271 (354)
T 2pbi_B          249 YPSGDAFASGSDDATCRLYDLRA  271 (354)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTT
T ss_pred             eCCCCEEEEEeCCCeEEEEECCC
Confidence            999884  889999999999764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.6e-26  Score=209.64  Aligned_cols=239  Identities=10%  Similarity=0.090  Sum_probs=171.3

Q ss_pred             hhHHHHhhhHhcChhHHH----HhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCC
Q 020480           16 LINEEYKIWKKNTPFLYD----LVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDD   91 (325)
Q Consensus        16 ~~~~~~~iw~~~~~~~y~----~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~   91 (325)
                      ..+.++|||+.+...+..    .+..+.  -.+.+++|+|.....  .  ....++.++.     +..+.+|++..... 
T Consensus       180 s~D~tI~iWd~~~~~~~~~~~~~l~~~~--~~V~~v~wsp~~~~~--~--~~~~LAs~s~-----DgtvrlWd~~~~~~-  247 (524)
T 2j04_B          180 KHSSCIQIFKMNTSTLHCVKVQTIVHSF--GEVWDLKWHEGCHAP--H--LVGCLSFVSQ-----EGTINFLEIIDNAT-  247 (524)
T ss_dssp             --CEEEEEEEEETTTCCEEEEEEEEECC--CSEEEEEECSSCCCS--S--SSCEEEEEET-----TSCEEEEECCCCSS-
T ss_pred             CCCceEEEEEccCCCCCceEEEEEEecC--CcEEEEEECCCCCCC--C--CCceEEEEec-----CCeEEEEEcCCCcc-
Confidence            466789999987765321    122222  248899999973210  0  0124544544     34799998742210 


Q ss_pred             CCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCc
Q 020480           92 SENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPD  171 (325)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~  171 (325)
                       ...  ..         .....+.   ....+|.+.|++++|++.+  .||+|+.||+|++||++.        + ..+.
T Consensus       248 -~~~--~~---------~~~~~p~---~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~--------~-~~~~  301 (524)
T 2j04_B          248 -DVH--VF---------KMCEKPS---LTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTD--------P-EVPS  301 (524)
T ss_dssp             -SSS--EE---------ECCCSCS---EEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTB--------C-SSCS
T ss_pred             -ccc--cc---------eeecCce---EEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCC--------C-CCce
Confidence             000  00         0001111   1245799999999999854  799999999999999986        2 2456


Q ss_pred             EEEecCCCceEEE--EecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCc--cEEEEEeecCCCcEEEEEe
Q 020480          172 LRLRGHSTEGYGL--SWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG--VVEDVAWHLRHEYLFGSVG  247 (325)
Q Consensus       172 ~~~~~h~~~v~~l--~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~v~~v~~~p~~~~~l~s~~  247 (325)
                      ..+.+|...|.++  .|+|++..+|+||+.|++|+|||++.+      .+...+.+|..  .|.+++|+|++ ..+++++
T Consensus       302 ~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~------~~~~~~~~~~~~~~v~~v~fsp~~-~~l~s~~  374 (524)
T 2j04_B          302 FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI------ATTKTTVSRFRGSNLVPVVYCPQI-YSYIYSD  374 (524)
T ss_dssp             EEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH------HHHCEEEEECSCCSCCCEEEETTT-TEEEEEC
T ss_pred             EEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC------CcccccccccccCcccceEeCCCc-CeEEEeC
Confidence            6788999999999  578877338999999999999999876      34445556643  48899999987 5789999


Q ss_pred             cCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          248 DDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       248 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      .|++|++||+++..+   +..+.+|.+.|++|+|+|+|.+  +|+.|+++++|+...
T Consensus       375 ~d~tv~lwd~~~~~~---~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          375 GASSLRAVPSRAAFA---VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             SSSEEEEEETTCTTC---CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             CCCcEEEEECccccc---ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            999999999999874   6778889999999999999985  899999999998643

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.94  E-value=5.1e-26  Score=214.10  Aligned_cols=226  Identities=15%  Similarity=0.210  Sum_probs=169.0

Q ss_pred             hHHHHhhhHhcChh--HHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCc
Q 020480           17 INEEYKIWKKNTPF--LYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEN   94 (325)
Q Consensus        17 ~~~~~~iw~~~~~~--~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~   94 (325)
                      .+.++|||+.....  +...+..|.  -++.+++|+|++.          .++.+.... .....+.+|+.  .      
T Consensus        79 ~d~~v~lWd~~~~~~~~~~~~~~~~--~~v~~v~fs~dg~----------~l~~~~~~~-~~~~~v~~wd~--~------  137 (611)
T 1nr0_A           79 VHGNVRIWDTTQTTHILKTTIPVFS--GPVKDISWDSESK----------RIAAVGEGR-ERFGHVFLFDT--G------  137 (611)
T ss_dssp             TTSEEEEEESSSTTCCEEEEEECSS--SCEEEEEECTTSC----------EEEEEECCS-SCSEEEEETTT--C------
T ss_pred             CCCCEEEeECCCCcceeeEeecccC--CceEEEEECCCCC----------EEEEEECCC-CceeEEEEeeC--C------
Confidence            46789999975422  112233343  3589999999874          444443211 11123333321  0      


Q ss_pred             ccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE
Q 020480           95 DARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL  174 (325)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  174 (325)
                                        .. .  ....+|.+.|++++|+|+++..|++|+.|++|++||...          .+....+
T Consensus       138 ------------------~~-~--~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~----------~~~~~~l  186 (611)
T 1nr0_A          138 ------------------TS-N--GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP----------FKFKSTF  186 (611)
T ss_dssp             ------------------CB-C--BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT----------BEEEEEE
T ss_pred             ------------------CC-c--ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC----------CeEeeee
Confidence                              00 0  013479999999999999866799999999999999875          3446778


Q ss_pred             ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeee-------cCCccEEEEEeecCCCcEEEEEe
Q 020480          175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK-------VHEGVVEDVAWHLRHEYLFGSVG  247 (325)
Q Consensus       175 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~v~~v~~~p~~~~~l~s~~  247 (325)
                      .+|...|.+++|+|++. +|++|+.|++|++||+..+.      ++..+.       +|...|.+++|+|++ .+|++|+
T Consensus       187 ~~H~~~V~~v~fspdg~-~las~s~D~~i~lwd~~~g~------~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s  258 (611)
T 1nr0_A          187 GEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGT------KTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASAS  258 (611)
T ss_dssp             CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCC------EEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEE
T ss_pred             ccccCceEEEEECCCCC-EEEEEECCCcEEEEECCCCc------EeeeeccccccccccCCCEEEEEECCCC-CEEEEEe
Confidence            89999999999999998 89999999999999998763      344442       799999999999997 6999999


Q ss_pred             cCCcEEEEEccCCCCCC----------------------------------------CeeEeeccCCCeeEEEeCCCCCc
Q 020480          248 DDQYLLIWDLRTPSVSK----------------------------------------PVQSVVAHQSEVGVSILNASFRL  287 (325)
Q Consensus       248 ~dg~i~iwd~~~~~~~~----------------------------------------~~~~~~~h~~~v~~i~~~p~~~~  287 (325)
                      .|++|++||+++++...                                        ....+.+|...|++++|+|+|++
T Consensus       259 ~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~  338 (611)
T 1nr0_A          259 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT  338 (611)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE
Confidence            99999999998754210                                        12234579999999999999985


Q ss_pred             --cCCCCceEEeeecce
Q 020480          288 --SHEDTCTCTHRHSRY  302 (325)
Q Consensus       288 --~~~~d~~~~~~~~~~  302 (325)
                        +++.|+++++|++..
T Consensus       339 l~s~s~D~~v~~Wd~~~  355 (611)
T 1nr0_A          339 LFSADAEGHINSWDIST  355 (611)
T ss_dssp             EEEEETTSCEEEEETTT
T ss_pred             EEEEeCCCcEEEEECCC
Confidence              889999999999753

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.94  E-value=3e-25  Score=194.40  Aligned_cols=171  Identities=19%  Similarity=0.288  Sum_probs=141.9

Q ss_pred             eEEEEEe-ccCC-CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE-EEecCCCceEEEEecCCCCC
Q 020480          116 VQIIQQI-NHDG-EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-RLRGHSTEGYGLSWSKFKEG  192 (325)
Q Consensus       116 ~~~~~~~-~h~~-~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~  192 (325)
                      +.++..+ +|.. .|.+++|+|++ .+||+|+.|+.|+||++..        +...... ...+|...|.+++|+|++. 
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g-~~las~~~D~~i~iw~~~~--------~~~~~~~~~~~~h~~~v~~~~~sp~g~-   74 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAG-TLLASCGGDRRIRIWGTEG--------DSWICKSVLSEGHQRTVRKVAWSPCGN-   74 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTS-SCEEEEETTSCEEEEEEET--------TEEEEEEEECSSCSSCEEEEEECTTSS-
T ss_pred             EEEeeeecCCCCCcEEEEEECCCC-CEEEEEcCCCeEEEEEcCC--------CcceeeeeeccccCCcEEEEEECCCCC-
Confidence            3444444 6877 99999999998 7999999999999999876        2111111 2358999999999999998 


Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc
Q 020480          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH  272 (325)
Q Consensus       193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h  272 (325)
                      +|++|+.|+.+++||+.....    .++..+.+|...|.+++|+|++ .+|++|+.|++|++||++.......+..+.+|
T Consensus        75 ~l~s~s~D~~v~iw~~~~~~~----~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h  149 (345)
T 3fm0_A           75 YLASASFDATTCIWKKNQDDF----ECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNSH  149 (345)
T ss_dssp             EEEEEETTSCEEEEEECCC-E----EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred             EEEEEECCCcEEEEEccCCCe----EEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence            899999999999999876532    4567788999999999999987 79999999999999999887643345667889


Q ss_pred             CCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          273 QSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       273 ~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      ...|.+++|+|++.+  +++.|+++++|+.+
T Consensus       150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~  180 (345)
T 3fm0_A          150 TQDVKHVVWHPSQELLASASYDDTVKLYREE  180 (345)
T ss_dssp             CSCEEEEEECSSSSCEEEEETTSCEEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEec
Confidence            999999999999985  88999999999865

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.94  E-value=2.4e-24  Score=185.68  Aligned_cols=202  Identities=15%  Similarity=0.226  Sum_probs=164.6

Q ss_pred             hhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCC
Q 020480           35 VITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANG  114 (325)
Q Consensus        35 ~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (325)
                      +..|..  ++.+++|.|++.          .++.|+..     ..+.+|+..                          .+
T Consensus        19 ~~gh~~--~v~~~~~s~~~~----------~l~s~~~d-----g~i~iw~~~--------------------------~~   55 (312)
T 4ery_A           19 LAGHTK--AVSSVKFSPNGE----------WLASSSAD-----KLIKIWGAY--------------------------DG   55 (312)
T ss_dssp             ECCCSS--CEEEEEECTTSS----------EEEEEETT-----SCEEEEETT--------------------------TC
T ss_pred             EcccCC--cEEEEEECCCCC----------EEEEeeCC-----CeEEEEeCC--------------------------Cc
Confidence            344443  588999999764          45555542     367777542                          12


Q ss_pred             ceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeE
Q 020480          115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL  194 (325)
Q Consensus       115 ~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  194 (325)
                      +.. .....|...|.+++|+|++ ++|++|+.||.|++||+..          ...+..+.+|...|.+++|+|++. +|
T Consensus        56 ~~~-~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l  122 (312)
T 4ery_A           56 KFE-KTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVSS----------GKCLKTLKGHSNYVFCCNFNPQSN-LI  122 (312)
T ss_dssp             CEE-EEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT----------CCEEEEEECCSSCEEEEEECSSSS-EE
T ss_pred             ccc-hhhccCCCceEEEEEcCCC-CEEEEECCCCEEEEEECCC----------CcEEEEEcCCCCCEEEEEEcCCCC-EE
Confidence            222 2345799999999999988 7999999999999999987          345778899999999999999998 89


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-eccC
Q 020480          195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQ  273 (325)
Q Consensus       195 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~  273 (325)
                      ++|+.|+.|++||++.+      .++..+..|...|.+++|+|++ .+|++|+.||.|++||+++++.   +..+ ..+.
T Consensus       123 ~s~~~d~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~  192 (312)
T 4ery_A          123 VSGSFDESVRIWDVKTG------KCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQC---LKTLIDDDN  192 (312)
T ss_dssp             EEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE---EEEECCSSC
T ss_pred             EEEeCCCcEEEEECCCC------EEEEEecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce---eeEEeccCC
Confidence            99999999999999876      4577788899999999999987 6999999999999999998874   5554 4567


Q ss_pred             CCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          274 SEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       274 ~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      .++.+++|+|++.+  +++.|+.+++|+++.
T Consensus       193 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  223 (312)
T 4ery_A          193 PPVSFVKFSPNGKYILAATLDNTLKLWDYSK  223 (312)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred             CceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            78999999999984  788999999998754

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.94  E-value=3.4e-25  Score=206.64  Aligned_cols=212  Identities=21%  Similarity=0.296  Sum_probs=170.6

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.++++|+.+.. +...+..|.  -++.+++|+|++.          .++.+..     +..+.+|+.  .        
T Consensus       364 ~dg~v~~~~~~~~-~~~~~~~~~--~~v~~~~~s~dg~----------~l~~~~~-----d~~v~~~~~--~--------  415 (577)
T 2ymu_A          364 DDKTVKLWNRNGQ-LLQTLTGHS--SSVRGVAFSPDGQ----------TIASASD-----DKTVKLWNR--N--------  415 (577)
T ss_dssp             TTSEEEEEETTCC-EEEEEECCS--SCEEEEEECTTSS----------CEEEEET-----TSEEEEECT--T--------
T ss_pred             CCCEEEEEcCCCC-EEEEecCCC--CCeEEEEECCCCC----------EEEEEeC-----CCEEEEEeC--C--------
Confidence            4567889987653 333444444  3588999999874          3555543     246777742  1        


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG  176 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  176 (325)
                                       ++ .......|...|++++|+|++ .+|++++.|+.|++|+...           ..+..+.+
T Consensus       416 -----------------~~-~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~~-----------~~~~~~~~  465 (577)
T 2ymu_A          416 -----------------GQ-LLQTLTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRNG-----------QLLQTLTG  465 (577)
T ss_dssp             -----------------CC-EEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTS-----------CEEEEEEC
T ss_pred             -----------------CC-EEEEecCCCCCeEEEEECCCC-CEEEEEcCCCEEEEEECCC-----------CEEEEEcC
Confidence                             11 122346799999999999998 7999999999999999754           44678889


Q ss_pred             CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEE
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD  256 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd  256 (325)
                      |...|.+++|+|++. +|++++.|+.|++||...       .++..+.+|...|++++|+|++ .+||+++.||.|++||
T Consensus       466 ~~~~v~~~~~spd~~-~las~~~d~~i~iw~~~~-------~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~v~lwd  536 (577)
T 2ymu_A          466 HSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNG-------QLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWN  536 (577)
T ss_dssp             CSSCEEEEEECTTSC-EEEEEETTSEEEEEETTS-------CEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEEC
T ss_pred             CCCCEEEEEEcCCCC-EEEEEeCCCEEEEEcCCC-------CEEEEEeCCCCCEEEEEEcCCC-CEEEEEECcCEEEEEe
Confidence            999999999999998 899999999999999643       4677889999999999999997 6899999999999999


Q ss_pred             ccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeee
Q 020480          257 LRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRH  299 (325)
Q Consensus       257 ~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~  299 (325)
                      . +++   .+..+.+|.+.|++++|+|+|++  +++.|+++++|+
T Consensus       537 ~-~~~---~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          537 R-NGQ---LLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             T-TSC---EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             C-CCC---EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            5 444   48888999999999999999985  889999999996

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.8e-24  Score=196.93  Aligned_cols=228  Identities=11%  Similarity=0.127  Sum_probs=160.0

Q ss_pred             CCCCceEEEEeeCCCCCCCCCcceEEEEEEecC--------------CCCCCCeEEEEEEECCCCCCCcccCCCCcccCC
Q 020480           40 LEWPSLTVEWLPDREEPPGKDYSVQKMILGTHT--------------SENEPNYLMLAQVQLPLDDSENDARHYDDDRSD  105 (325)
Q Consensus        40 ~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~  105 (325)
                      .+.++++++|+|+...... .-..+.+++|+..              +.+.++.|.+|++.-.                 
T Consensus       132 ~~~~V~sv~w~p~~~~~~~-~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~-----------------  193 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDI-GKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTS-----------------  193 (524)
T ss_dssp             CCC--CCCSCEEECCCCSS-CSSEEEEEEEEEC------------------CEEEEEEEEETT-----------------
T ss_pred             CCCceeEEEecccCCCCcc-CcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCC-----------------
Confidence            3678999999998632100 0023567776642              2334556777776411                 


Q ss_pred             CCCCCCCCCceEEEE-EeccCCCeeEEEecCCC-----CcEEEEEecCCeEEEEeCCCCCCCCC-CCCCCCCcEEEecCC
Q 020480          106 FGGFGCANGKVQIIQ-QINHDGEVNRARYMPQN-----PFLIATKTVSAEVYVFDYSKHPSKPP-LDGACSPDLRLRGHS  178 (325)
Q Consensus       106 ~~~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~-----~~~la~g~~dg~v~vwd~~~~~~~~~-~~~~~~~~~~~~~h~  178 (325)
                             ........ ...|.+.|.+++|+|++     ..+||+|+.||+|++|++........ ......+...+.+|.
T Consensus       194 -------~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~  266 (524)
T 2j04_B          194 -------TLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD  266 (524)
T ss_dssp             -------TCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT
T ss_pred             -------CCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC
Confidence                   01111122 34578999999999961     26999999999999999976211000 000123456788999


Q ss_pred             CceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEE--EeecCCCcEEEEEecCCcEEEEE
Q 020480          179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV--AWHLRHEYLFGSVGDDQYLLIWD  256 (325)
Q Consensus       179 ~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v--~~~p~~~~~l~s~~~dg~i~iwd  256 (325)
                      ..|++++|++. . .|++|+.||+|++||++.+.     .+...+.+|...|.++  +|+|++..+||||+.|++|+|||
T Consensus       267 ~~v~sv~~s~~-~-~lasgs~DgtV~lWD~~~~~-----~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD  339 (524)
T 2j04_B          267 SLITTFDFLSP-T-TVVCGFKNGFVAEFDLTDPE-----VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN  339 (524)
T ss_dssp             TCEEEEEESSS-S-EEEEEETTSEEEEEETTBCS-----SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC
T ss_pred             CCEEEEEecCC-C-eEEEEeCCCEEEEEECCCCC-----CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE
Confidence            99999999985 3 79999999999999998753     2355678999999999  56776547999999999999999


Q ss_pred             ccCCCCCCCeeEeeccCC--CeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          257 LRTPSVSKPVQSVVAHQS--EVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       257 ~~~~~~~~~~~~~~~h~~--~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      +++.+.   +..+.+|..  .|.+++|+|++..  +++.|+++++|+++.
T Consensus       340 ~~~~~~---~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~  386 (524)
T 2j04_B          340 PKDIAT---TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA  386 (524)
T ss_dssp             GGGHHH---HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC
T ss_pred             CCCCCc---ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc
Confidence            998774   556666653  5889999998863  778899999998764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.93  E-value=2.1e-24  Score=191.28  Aligned_cols=224  Identities=15%  Similarity=0.190  Sum_probs=170.6

Q ss_pred             HHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCC
Q 020480           19 EEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARH   98 (325)
Q Consensus        19 ~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~   98 (325)
                      ++..+|......++..+..|..  ++.+++|+|++.         ..++.|+..     ..|.+|++.-.          
T Consensus        53 ~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~---------~~l~s~~~d-----g~i~iwd~~~~----------  106 (383)
T 3ei3_B           53 QEPFIRSLKSYKLHRTASPFDR--RVTSLEWHPTHP---------TTVAVGSKG-----GDIILWDYDVQ----------  106 (383)
T ss_dssp             HHHHHHHHTTCEEEEEECCCSS--CEEEEEECSSCT---------TEEEEEEBT-----SCEEEEETTST----------
T ss_pred             hccccccccccceEEeccCCCC--CEEEEEECCCCC---------CEEEEEcCC-----CeEEEEeCCCc----------
Confidence            3345565555555555555654  488999999873         146666643     36888865310          


Q ss_pred             CCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec--
Q 020480           99 YDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG--  176 (325)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~--  176 (325)
                                     .........+|.+.|.+++|+|++..+|++|+.||.|++||+..           .....+..  
T Consensus       107 ---------------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----------~~~~~~~~~~  160 (383)
T 3ei3_B          107 ---------------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-----------SVIQVFAKTD  160 (383)
T ss_dssp             ---------------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-----------CEEEEEECCC
T ss_pred             ---------------ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-----------CceEEEeccC
Confidence                           11222222469999999999995448999999999999999985           22444443  


Q ss_pred             -CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEE
Q 020480          177 -HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW  255 (325)
Q Consensus       177 -h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iw  255 (325)
                       |...|.+++|+|++. +|++|+.|+.|++||++.       .++..+.+|...|.+++|+|++..++++|+.|+.|++|
T Consensus       161 ~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw  232 (383)
T 3ei3_B          161 SWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDG-------HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLW  232 (383)
T ss_dssp             CSSCCEEEEEEETTTT-EEEEEETTSEEEEEETTS-------CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred             CCCCCeEEEEECCCCC-EEEEECCCCCEEEEECCC-------CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEE
Confidence             448899999999998 899999999999999953       46778889999999999999986599999999999999


Q ss_pred             EccCCCCCCCeeEeeccCCCeeEEEeCC-CCCc--cCCCCceEEeeecce
Q 020480          256 DLRTPSVSKPVQSVVAHQSEVGVSILNA-SFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       256 d~~~~~~~~~~~~~~~h~~~v~~i~~~p-~~~~--~~~~d~~~~~~~~~~  302 (325)
                      |+++.+.........+|...|.+++|+| ++.+  +++.|+.+++|+++.
T Consensus       233 d~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~  282 (383)
T 3ei3_B          233 DLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD  282 (383)
T ss_dssp             EGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred             eCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence            9998543212333347999999999999 8874  788999999999764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=6.9e-25  Score=193.26  Aligned_cols=233  Identities=17%  Similarity=0.265  Sum_probs=177.5

Q ss_pred             hHHHHhhhHhc--ChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCc
Q 020480           17 INEEYKIWKKN--TPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEN   94 (325)
Q Consensus        17 ~~~~~~iw~~~--~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~   94 (325)
                      .+..++||+.+  ...+...+..|.  -++.+++|.|+...        ..++.+...     ..+.+|++.        
T Consensus        31 ~dg~i~iw~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~--------~~l~s~~~d-----g~v~iwd~~--------   87 (379)
T 3jrp_A           31 SDKTIKIFEVEGETHKLIDTLTGHE--GPVWRVDWAHPKFG--------TILASCSYD-----GKVLIWKEE--------   87 (379)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCS--SCEEEEEECCGGGC--------SEEEEEETT-----SCEEEEEEE--------
T ss_pred             CCCcEEEEecCCCcceeeeEecCCC--CcEEEEEeCCCCCC--------CEEEEeccC-----CEEEEEEcC--------
Confidence            46679999987  434444444454  45899999876321        256565542     479999885        


Q ss_pred             ccCCCCcccCCCCCCCCCCCce-EEEEEeccCCCeeEEEecCC--CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCc
Q 020480           95 DARHYDDDRSDFGGFGCANGKV-QIIQQINHDGEVNRARYMPQ--NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPD  171 (325)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~v~~~~~--~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~  171 (325)
                                        .++. .......|...|.+++|+|+  + .+|++|+.||.|++||+..        ......
T Consensus        88 ------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~--------~~~~~~  140 (379)
T 3jrp_A           88 ------------------NGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKE--------NGTTSP  140 (379)
T ss_dssp             ------------------TTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCT--------TSCCCE
T ss_pred             ------------------CCceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCC--------CCceee
Confidence                              1222 22334469999999999998  6 7999999999999999987        333445


Q ss_pred             EEEecCCCceEEEEecC-------------CCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecC
Q 020480          172 LRLRGHSTEGYGLSWSK-------------FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR  238 (325)
Q Consensus       172 ~~~~~h~~~v~~l~~~p-------------~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  238 (325)
                      ..+.+|...|.+++|+|             ++. ++++|+.||.|++||++.....  ......+.+|...|.+++|+|+
T Consensus       141 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~  217 (379)
T 3jrp_A          141 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPT  217 (379)
T ss_dssp             EEEECCTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCC
T ss_pred             EEecCCCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcc--eeeEEEEecccCcEeEEEECCC
Confidence            67789999999999999             466 8999999999999999876431  1245677889999999999998


Q ss_pred             C--CcEEEEEecCCcEEEEEccCCCCCCCeeEe--eccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          239 H--EYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       239 ~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      +  ..+|++++.||.|++||++...........  ..|...|.+++|+|++.+  +++.|+.+++|++..
T Consensus       218 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          218 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             CSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            3  479999999999999999987531112222  348889999999999985  678899999999763

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.93  E-value=4.4e-25  Score=199.06  Aligned_cols=239  Identities=15%  Similarity=0.244  Sum_probs=181.3

Q ss_pred             HHHHhhhHhcC----------hhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEEC
Q 020480           18 NEEYKIWKKNT----------PFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQL   87 (325)
Q Consensus        18 ~~~~~iw~~~~----------~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~   87 (325)
                      +.++++|+...          ......+..|..  ++.+++|.|....         .++.|..     +..|.+|++.-
T Consensus       150 dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~---------~l~s~~~-----dg~i~vwd~~~  213 (430)
T 2xyi_A          150 SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK--EGYGLSWNPNLNG---------YLLSASD-----DHTICLWDINA  213 (430)
T ss_dssp             SSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS--CCCCEEECTTSTT---------EEEEECT-----TSCEEEEETTS
T ss_pred             CCcEEEEECCCcccccCccccCCCcEEecCCCC--CeEEEEeCCCCCC---------eEEEEeC-----CCeEEEEeCCC
Confidence            46788998875          222333344443  4788999998642         3555543     34788887631


Q ss_pred             CCCCCCcccCCCCcccCCCCCCCCCCCceEE-EEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCC
Q 020480           88 PLDDSENDARHYDDDRSDFGGFGCANGKVQI-IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDG  166 (325)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~  166 (325)
                      ..           .          ....+.. .....|.+.|.+++|+|.+..+|++|+.||.|++||++..       .
T Consensus       214 ~~-----------~----------~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~-------~  265 (430)
T 2xyi_A          214 TP-----------K----------EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN-------N  265 (430)
T ss_dssp             CC-----------B----------GGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS-------C
T ss_pred             CC-----------C----------CCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC-------C
Confidence            10           0          0011111 2234799999999999966689999999999999999861       1


Q ss_pred             CCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEE
Q 020480          167 ACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV  246 (325)
Q Consensus       167 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~  246 (325)
                      ...++..+..|...|.+++|+|++..++++|+.||.|++||++...     .++..+..|...|.+++|+|++..+|+++
T Consensus       266 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-----~~~~~~~~h~~~v~~i~~sp~~~~~l~s~  340 (430)
T 2xyi_A          266 TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVQWSPHNETILASS  340 (430)
T ss_dssp             SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-----SCSEEEECCSSCEEEEEECSSCTTEEEEE
T ss_pred             CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-----CCeEEeecCCCCEEEEEECCCCCCEEEEE
Confidence            1356777889999999999999998789999999999999999743     35777888999999999999987899999


Q ss_pred             ecCCcEEEEEccCCCC-----------CCCeeEeeccCCCeeEEEeCCCCC-c--cCCCCceEEeeecceeee
Q 020480          247 GDDQYLLIWDLRTPSV-----------SKPVQSVVAHQSEVGVSILNASFR-L--SHEDTCTCTHRHSRYLLY  305 (325)
Q Consensus       247 ~~dg~i~iwd~~~~~~-----------~~~~~~~~~h~~~v~~i~~~p~~~-~--~~~~d~~~~~~~~~~~~~  305 (325)
                      +.||.|++||++....           ...+..+.+|...|++++|+|++. +  +++.|+.+++|++....+
T Consensus       341 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~  413 (430)
T 2xyi_A          341 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY  413 (430)
T ss_dssp             ETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHH
T ss_pred             eCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccccc
Confidence            9999999999987331           124566678999999999999988 3  788999999998865443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.93  E-value=1.9e-24  Score=186.23  Aligned_cols=161  Identities=20%  Similarity=0.316  Sum_probs=144.9

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ...+|.+.|++++|+|++ .+|++|+.||.|++|++..          ......+.+|...|.+++|+|++. +|++|+.
T Consensus        18 ~~~gh~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~   85 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYD----------GKFEKTISGHKLGISDVAWSSDSN-LLVSASD   85 (312)
T ss_dssp             EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT----------CCEEEEECCCSSCEEEEEECTTSS-EEEEEET
T ss_pred             EEcccCCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCC----------cccchhhccCCCceEEEEEcCCCC-EEEEECC
Confidence            345799999999999998 7999999999999999876          344667889999999999999998 8999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS  279 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i  279 (325)
                      |+.|++||++.+      .++..+.+|...|.+++|+|++ .+|++|+.||.|++||+++++.   +..+..|..+|.++
T Consensus        86 d~~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~  155 (312)
T 4ery_A           86 DKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKC---LKTLPAHSDPVSAV  155 (312)
T ss_dssp             TSEEEEEETTTC------CEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCE---EEEECCCSSCEEEE
T ss_pred             CCEEEEEECCCC------cEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEE---EEEecCCCCcEEEE
Confidence            999999999876      4577889999999999999987 6999999999999999998874   78888999999999


Q ss_pred             EeCCCCCc--cCCCCceEEeeecce
Q 020480          280 ILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       280 ~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      +|+|++.+  +++.|+.+++|+++.
T Consensus       156 ~~~~~~~~l~~~~~d~~i~~wd~~~  180 (312)
T 4ery_A          156 HFNRDGSLIVSSSYDGLCRIWDTAS  180 (312)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEcCCCCEEEEEeCCCcEEEEECCC
Confidence            99999984  888999999999754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.93  E-value=9.7e-25  Score=190.93  Aligned_cols=221  Identities=17%  Similarity=0.185  Sum_probs=166.4

Q ss_pred             hhhHHHHhhhHhcChh-------HHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEEC
Q 020480           15 RLINEEYKIWKKNTPF-------LYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQL   87 (325)
Q Consensus        15 ~~~~~~~~iw~~~~~~-------~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~   87 (325)
                      ...|.++|+|+.....       ....+..|..  ++.+++|.|+..          .++.|+.     +..+.+|++. 
T Consensus        45 gs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~--~V~~~~~~~~~~----------~l~s~s~-----D~~v~lwd~~-  106 (343)
T 2xzm_R           45 GSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH--FVSDLALSQENC----------FAISSSW-----DKTLRLWDLR-  106 (343)
T ss_dssp             EETTSCEEEEEECSSCCSSBSEEEEEEECCCSS--CEEEEEECSSTT----------EEEEEET-----TSEEEEEETT-
T ss_pred             EcCCCEEEEEECCcCCcccccccccchhccCCC--ceEEEEECCCCC----------EEEEEcC-----CCcEEEEECC-
Confidence            3467889999986432       1223344443  588999999764          4555543     3478888652 


Q ss_pred             CCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCC
Q 020480           88 PLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA  167 (325)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~  167 (325)
                                               .++ ......+|.+.|.+++|+|++ .+|++|+.|+.|++||+..          
T Consensus       107 -------------------------~~~-~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~----------  149 (343)
T 2xzm_R          107 -------------------------TGT-TYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILG----------  149 (343)
T ss_dssp             -------------------------SSC-EEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSS----------
T ss_pred             -------------------------CCc-EEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccC----------
Confidence                                     112 122345799999999999998 7999999999999999874          


Q ss_pred             CCCcEEE---ecCCCceEEEEecCCCC---------CeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEe
Q 020480          168 CSPDLRL---RGHSTEGYGLSWSKFKE---------GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAW  235 (325)
Q Consensus       168 ~~~~~~~---~~h~~~v~~l~~~p~~~---------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~  235 (325)
                       ......   .+|...|.+++|+|.+.         .+|++++.||.|++||...       .....+.+|...|.+++|
T Consensus       150 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~h~~~v~~~~~  221 (343)
T 2xzm_R          150 -ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-------QIRYTFKAHESNVNHLSI  221 (343)
T ss_dssp             -CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-------EEEEEEECCSSCEEEEEE
T ss_pred             -CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-------ceeEEEcCccccceEEEE
Confidence             111222   26889999999999872         3899999999999999542       356678899999999999


Q ss_pred             ecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc-cCCCCceEEeeecce
Q 020480          236 HLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL-SHEDTCTCTHRHSRY  302 (325)
Q Consensus       236 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~~~  302 (325)
                      +|++ .+|++|+.||.|++||++....  +...+ .+...|.+++|+|++.+ +++.|+.+++|++..
T Consensus       222 s~~g-~~l~sgs~dg~v~iwd~~~~~~--~~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~  285 (343)
T 2xzm_R          222 SPNG-KYIATGGKDKKLLIWDILNLTY--PQREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMT  285 (343)
T ss_dssp             CTTS-SEEEEEETTCEEEEEESSCCSS--CSEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSS
T ss_pred             CCCC-CEEEEEcCCCeEEEEECCCCcc--cceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            9997 6999999999999999965543  34443 35667999999999986 666788999998743

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.93  E-value=4.1e-25  Score=195.03  Aligned_cols=166  Identities=13%  Similarity=0.069  Sum_probs=132.9

Q ss_pred             EEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       119 ~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      ...+.|.+.|.+++|+|++ +++++++.++ +.+|+...        +.........+|...|.+++|+|++. .+++++
T Consensus       170 ~~~~~~~~~V~~v~fspdg-~~l~s~s~~~-~~~~~~~~--------~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~~s  238 (365)
T 4h5i_A          170 KFEIETRGEVKDLHFSTDG-KVVAYITGSS-LEVISTVT--------GSCIARKTDFDKNWSLSKINFIADDT-VLIAAS  238 (365)
T ss_dssp             EEEEECSSCCCEEEECTTS-SEEEEECSSC-EEEEETTT--------CCEEEEECCCCTTEEEEEEEEEETTE-EEEEEE
T ss_pred             EEEeCCCCceEEEEEccCC-ceEEecccee-EEEEEecc--------CcceeeeecCCCCCCEEEEEEcCCCC-EEEEEe
Confidence            3456789999999999999 7899988665 55565554        22222223457888999999999998 899998


Q ss_pred             CCC----cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-eccC
Q 020480          199 DDA----QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQ  273 (325)
Q Consensus       199 ~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~  273 (325)
                      .|+    .+++|++.....  .......+.+|...|++++|+|++ .+||+|+.|++|+|||+++++.   +..+ .+|.
T Consensus       239 ~d~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~~---~~~~~~gH~  312 (365)
T 4h5i_A          239 LKKGKGIVLTKISIKSGNT--SVLRSKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLSM---SKIFKQAHS  312 (365)
T ss_dssp             ESSSCCEEEEEEEEETTEE--EEEEEEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEE---EEEETTSSS
T ss_pred             cCCcceeEEeeccccccee--cceeeeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCcE---EEEecCccc
Confidence            887    688898876532  112245567899999999999997 6999999999999999999873   7664 7899


Q ss_pred             CCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          274 SEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       274 ~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      .+|++|+|+|+|++  +++.|+++++|++.
T Consensus       313 ~~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          313 FAITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             CCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            99999999999985  89999999999975

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.93  E-value=1e-24  Score=188.94  Aligned_cols=219  Identities=14%  Similarity=0.134  Sum_probs=170.3

Q ss_pred             hhHHHHhhhHhcChh-----HHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCC
Q 020480           16 LINEEYKIWKKNTPF-----LYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLD   90 (325)
Q Consensus        16 ~~~~~~~iw~~~~~~-----~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~   90 (325)
                      ..|.++++|+.....     ....+..|..  ++.+++|.|++.          .++.|+.     +..|.+|++.    
T Consensus        37 s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~dg~----------~l~s~s~-----D~~v~~wd~~----   95 (319)
T 3frx_A           37 SRDKTLISWKLTGDDQKFGVPVRSFKGHSH--IVQDCTLTADGA----------YALSASW-----DKTLRLWDVA----   95 (319)
T ss_dssp             ETTSEEEEEEEEEETTEEEEEEEEEECCSS--CEEEEEECTTSS----------EEEEEET-----TSEEEEEETT----
T ss_pred             cCCccEEEecCCCCCccccccceEEeCCcc--cEEEEEECCCCC----------EEEEEeC-----CCEEEEEECC----
Confidence            467889999876422     1123334443  588999999874          4555554     3478888752    


Q ss_pred             CCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCC
Q 020480           91 DSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSP  170 (325)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~  170 (325)
                                            .++ ......+|.+.|.+++|+|++ .+|++|+.|+.|++||++.           ..
T Consensus        96 ----------------------~~~-~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~-----------~~  140 (319)
T 3frx_A           96 ----------------------TGE-TYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKG-----------QC  140 (319)
T ss_dssp             ----------------------TTE-EEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTS-----------CE
T ss_pred             ----------------------CCC-eeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-----------Ce
Confidence                                  122 223456799999999999988 7999999999999999975           44


Q ss_pred             cEEEecCCCceEEEEecCCCC-----CeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEE
Q 020480          171 DLRLRGHSTEGYGLSWSKFKE-----GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGS  245 (325)
Q Consensus       171 ~~~~~~h~~~v~~l~~~p~~~-----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s  245 (325)
                      +..+.+|...|.++.|+|...     ..+++++.|+.|++||++..      .....+.+|...|.+++|+|++ .+|++
T Consensus       141 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~------~~~~~~~~h~~~v~~~~~sp~g-~~l~s  213 (319)
T 3frx_A          141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF------QIEADFIGHNSNINTLTASPDG-TLIAS  213 (319)
T ss_dssp             EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT------EEEEEECCCCSCEEEEEECTTS-SEEEE
T ss_pred             EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc------hhheeecCCCCcEEEEEEcCCC-CEEEE
Confidence            677889999999999998532     27999999999999999876      4567788999999999999987 69999


Q ss_pred             EecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc-cCCCCceEEeeecc
Q 020480          246 VGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL-SHEDTCTCTHRHSR  301 (325)
Q Consensus       246 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~~  301 (325)
                      |+.||.|++||+++.+.   +..+.. ...|.+++|+|++.+ .++.+..+++|++.
T Consensus       214 ~~~dg~i~iwd~~~~~~---~~~~~~-~~~v~~~~~sp~~~~la~~~~~~i~v~~~~  266 (319)
T 3frx_A          214 AGKDGEIMLWNLAAKKA---MYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSLD  266 (319)
T ss_dssp             EETTCEEEEEETTTTEE---EEEEEC-CSCEEEEEECSSSSEEEEEETTEEEEEEET
T ss_pred             EeCCCeEEEEECCCCcE---EEEecC-CCcEEEEEEcCCCCEEEEEcCCCcEEEEeC
Confidence            99999999999998873   666654 568999999999985 44456668888754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.93  E-value=5.8e-24  Score=185.98  Aligned_cols=162  Identities=19%  Similarity=0.212  Sum_probs=136.5

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ...+|...|++++|+|++ .++++|+.|+.|++||+..          ...+..+.+|...|.+++|+|++. +|++|+.
T Consensus        71 ~l~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~lwd~~~----------~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~  138 (343)
T 2xzm_R           71 ALTGHNHFVSDLALSQEN-CFAISSSWDKTLRLWDLRT----------GTTYKRFVGHQSEVYSVAFSPDNR-QILSAGA  138 (343)
T ss_dssp             EECCCSSCEEEEEECSST-TEEEEEETTSEEEEEETTS----------SCEEEEEECCCSCEEEEEECSSTT-EEEEEET
T ss_pred             hhccCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCC----------CcEEEEEcCCCCcEEEEEECCCCC-EEEEEcC
Confidence            456799999999999988 7999999999999999987          345678899999999999999998 8999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCC---------cEEEEEecCCcEEEEEccCCCCCCCeeEee
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE---------YLFGSVGDDQYLLIWDLRTPSVSKPVQSVV  270 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  270 (325)
                      |+.|++||+.....    ........|...|.+++|+|.+.         .+|++++.||.|++||.+. .   ....+.
T Consensus       139 d~~i~~wd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~---~~~~~~  210 (343)
T 2xzm_R          139 EREIKLWNILGECK----FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-Q---IRYTFK  210 (343)
T ss_dssp             TSCEEEEESSSCEE----EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-E---EEEEEE
T ss_pred             CCEEEEEeccCCce----eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-c---eeEEEc
Confidence            99999999974311    11111236888999999999752         5899999999999999432 2   366778


Q ss_pred             ccCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          271 AHQSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       271 ~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      +|...|++++|+|+|++  +++.|+++++|+++
T Consensus       211 ~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          211 AHESNVNHLSISPNGKYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred             CccccceEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            99999999999999985  88999999999983

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.2e-25  Score=198.22  Aligned_cols=240  Identities=15%  Similarity=0.227  Sum_probs=178.6

Q ss_pred             hhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcc
Q 020480           16 LINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEND   95 (325)
Q Consensus        16 ~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~   95 (325)
                      ..+..+++|+.........+......-++.+++|.|++.          .++.|...     ..+.+|++.-.       
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~----------~l~~~~~d-----g~v~vw~~~~~-------   99 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNK----------IIAGALDN-----GSLELYSTNEA-------   99 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSS----------CEEEEESS-----SCEEEECCSST-------
T ss_pred             CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCC----------eEEEEccC-----CeEEEeecccc-------
Confidence            345689999998875443333334455789999999874          45555542     36888866311       


Q ss_pred             cCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe
Q 020480           96 ARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR  175 (325)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  175 (325)
                                      ..+.-.......|.+.|++++|+|++..+|++|+.||.|++||+......... ........+.
T Consensus       100 ----------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~  162 (416)
T 2pm9_A          100 ----------------NNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN-YTPLTPGQSM  162 (416)
T ss_dssp             ----------------TSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT-CCCBCCCCSC
T ss_pred             ----------------cccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc-cccccccccc
Confidence                            00111233445799999999999984489999999999999999872210000 0011122346


Q ss_pred             cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecC------CccEEEEEeecCCCcEEEEEecC
Q 020480          176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH------EGVVEDVAWHLRHEYLFGSVGDD  249 (325)
Q Consensus       176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~v~~v~~~p~~~~~l~s~~~d  249 (325)
                      +|...|.+++|+|++..+|++++.||.|++||++.+      ..+..+..+      ...|.+++|+|++..++++++.|
T Consensus       163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  236 (416)
T 2pm9_A          163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK------KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGS  236 (416)
T ss_dssp             CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT------EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECC
T ss_pred             CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC------CcceEEeccccccccCCceEEEEECCCCCCEEEEEECC
Confidence            789999999999995559999999999999999986      345555555      78899999999987899999999


Q ss_pred             C---cEEEEEccCCCCCCCeeEee-ccCCCeeEEEeCC-CCCc--cCCCCceEEeeecce
Q 020480          250 Q---YLLIWDLRTPSVSKPVQSVV-AHQSEVGVSILNA-SFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       250 g---~i~iwd~~~~~~~~~~~~~~-~h~~~v~~i~~~p-~~~~--~~~~d~~~~~~~~~~  302 (325)
                      +   .|++||+++...  ++..+. +|...|.+++|+| ++.+  +++.|+++++|+++.
T Consensus       237 ~~~~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~  294 (416)
T 2pm9_A          237 DNDPSILIWDLRNANT--PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES  294 (416)
T ss_dssp             SSSCCCCEEETTSTTS--CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS
T ss_pred             CCCceEEEEeCCCCCC--CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC
Confidence            9   999999998743  467777 8999999999999 7764  888999999999754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.93  E-value=1.8e-24  Score=194.48  Aligned_cols=253  Identities=16%  Similarity=0.226  Sum_probs=182.6

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCC-----CC
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPL-----DD   91 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~-----~~   91 (325)
                      .+.+++||+.+++.+...+..+...-++.+++|+|++.          .++.|+...     .+.+|++.-..     ..
T Consensus       123 ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~----------~lasgs~Dg-----~v~iWd~~~~~~~~~~~~  187 (420)
T 4gga_A          123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN----------YLAVGTSSA-----EVQLWDVQQQKRLRNMTS  187 (420)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS----------EEEEEETTS-----CEEEEETTTTEEEEEECC
T ss_pred             eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCC----------EEEEEECCC-----eEEEEEcCCCcEEEEEeC
Confidence            46889999999887776666555556799999999875          455555432     45555432000     00


Q ss_pred             CCcccC--C-------CCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCC
Q 020480           92 SENDAR--H-------YDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP  162 (325)
Q Consensus        92 ~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~  162 (325)
                      ......  .       .....+.+..|..............|...+..+.|+|++ .++++++.|+.|++|+.....   
T Consensus       188 h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~---  263 (420)
T 4gga_A          188 HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGE---  263 (420)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCS---
T ss_pred             CCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeecccc---
Confidence            000000  0       000111222233333334444556799999999999998 799999999999999997621   


Q ss_pred             CCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE--eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCC
Q 020480          163 PLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG--SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE  240 (325)
Q Consensus       163 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  240 (325)
                         .....+.....|...|.+++|+|.+..+++++  +.|+.|++||++++      .+...+..| ..+.++.|+|++.
T Consensus       264 ---~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~------~~~~~~~~~-~~v~~~~~~~~~~  333 (420)
T 4gga_A          264 ---GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG------ACLSAVDAH-SQVCSILWSPHYK  333 (420)
T ss_dssp             ---SCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT------EEEEEEECS-SCEEEEEEETTTT
T ss_pred             ---ccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc------ccceeeccc-cceeeeeecCCCC
Confidence               12345677788999999999999988777764  57999999999987      445555544 5688999999875


Q ss_pred             cEEEEEe--cCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          241 YLFGSVG--DDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       241 ~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                       .+++++  .|+.|+|||+++++   ++..+.+|.+.|++++|+|+|.+  +++.|+++++|++..
T Consensus       334 -~lv~~sg~~d~~I~iwd~~~~~---~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          334 -ELISGHGFAQNQLVIWKYPTMA---KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             -EEEEEECTTTCCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             -eEEEEEecCCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence             554443  79999999999988   48999999999999999999985  899999999999754

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.93  E-value=1.6e-24  Score=191.98  Aligned_cols=227  Identities=10%  Similarity=0.067  Sum_probs=171.9

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.+++||+.+.......+......-++.+++|+|+..         ..++.++.     +..+.+|++.          
T Consensus        94 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---------~~l~s~~~-----d~~i~iwd~~----------  149 (383)
T 3ei3_B           94 KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNT---------NQLFVSSI-----RGATTLRDFS----------  149 (383)
T ss_dssp             BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEE---------EEEEEEET-----TTEEEEEETT----------
T ss_pred             CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCC---------CEEEEEeC-----CCEEEEEECC----------
Confidence            46789999998766554444333445689999999431         34555553     3478888652          


Q ss_pred             CCCCcccCCCCCCCCCCCceEEE-EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe
Q 020480           97 RHYDDDRSDFGGFGCANGKVQII-QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR  175 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  175 (325)
                                      ...+... ....|...|.+++|+|++ .+|++|+.||.|++||++.           .++..+.
T Consensus       150 ----------------~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~-----------~~~~~~~  201 (383)
T 3ei3_B          150 ----------------GSVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLDG-----------HEIFKEK  201 (383)
T ss_dssp             ----------------SCEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETTS-----------CEEEEEE
T ss_pred             ----------------CCceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECCC-----------CEEEEec
Confidence                            1112211 112356889999999998 7999999999999999954           5577888


Q ss_pred             cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeec-CCCcEEEEEecCCcEEE
Q 020480          176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL-RHEYLFGSVGDDQYLLI  254 (325)
Q Consensus       176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~s~~~dg~i~i  254 (325)
                      +|...|.+++|+|++..++++|+.|+.|++||++......  .++..+ +|...|.+++|+| ++ .+|++++.|+.|++
T Consensus       202 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~-~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~i  277 (383)
T 3ei3_B          202 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN--SYIAEM-PHEKPVNAAYFNPTDS-TKLLTTDQRNEIRV  277 (383)
T ss_dssp             CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT--CEEEEE-ECSSCEEEEEECTTTS-CEEEEEESSSEEEE
T ss_pred             cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc--ceEEEe-cCCCceEEEEEcCCCC-CEEEEEcCCCcEEE
Confidence            9999999999999998789999999999999999753221  234444 6999999999999 76 69999999999999


Q ss_pred             EEccCCCCCCCeeEeeccC-----------------CCeeEEEeCCCCCccCCCCceEEeeecce
Q 020480          255 WDLRTPSVSKPVQSVVAHQ-----------------SEVGVSILNASFRLSHEDTCTCTHRHSRY  302 (325)
Q Consensus       255 wd~~~~~~~~~~~~~~~h~-----------------~~v~~i~~~p~~~~~~~~d~~~~~~~~~~  302 (325)
                      ||+++...   +..+..|.                 ..+..++|+|+++++++.|+.+++|++..
T Consensus       278 wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~  339 (383)
T 3ei3_B          278 YSSYDWSK---PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANS  339 (383)
T ss_dssp             EETTBTTS---CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTT
T ss_pred             EECCCCcc---ccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCC
Confidence            99998875   34443332                 34556888898888889999999999753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=6e-24  Score=187.24  Aligned_cols=212  Identities=15%  Similarity=0.184  Sum_probs=167.5

Q ss_pred             HhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCC
Q 020480           34 LVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCAN  113 (325)
Q Consensus        34 ~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (325)
                      .+..|..  ++.+++|+|++.          .++.|..     +..|.+|++.-                          
T Consensus         6 ~~~~h~~--~v~~~~~s~~~~----------~l~~~~~-----dg~i~iw~~~~--------------------------   42 (379)
T 3jrp_A            6 IANAHNE--LIHDAVLDYYGK----------RLATCSS-----DKTIKIFEVEG--------------------------   42 (379)
T ss_dssp             CEEECCC--CEEEEEECSSSS----------EEEEEET-----TSCEEEEEEET--------------------------
T ss_pred             EecCCcc--cEEEEEEcCCCC----------EEEEEEC-----CCcEEEEecCC--------------------------
Confidence            3444554  489999999874          5666654     24799998851                          


Q ss_pred             CceEEE-EEeccCCCeeEEEecCC--CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCC-
Q 020480          114 GKVQII-QQINHDGEVNRARYMPQ--NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF-  189 (325)
Q Consensus       114 ~~~~~~-~~~~h~~~v~~v~~~~~--~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-  189 (325)
                      +..+.. ....|.+.|++++|+++  + .+|++|+.||.|++||+..        +....+..+.+|...|.+++|+|+ 
T Consensus        43 ~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~  113 (379)
T 3jrp_A           43 ETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEEN--------GRWSQIAVHAVHSASVNSVQWAPHE  113 (379)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEEET--------TEEEEEEEECCCSSCEEEEEECCGG
T ss_pred             CcceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEEEcCC--------CceeEeeeecCCCcceEEEEeCCCC
Confidence            122232 34469999999999976  5 7999999999999999987        332356677889999999999999 


Q ss_pred             -CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecC------------CCcEEEEEecCCcEEEEE
Q 020480          190 -KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR------------HEYLFGSVGDDQYLLIWD  256 (325)
Q Consensus       190 -~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~------------~~~~l~s~~~dg~i~iwd  256 (325)
                       +. +|++++.||.|++||++....    .....+..|...|.+++|+|.            +..++++|+.||.|++||
T Consensus       114 ~~~-~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  188 (379)
T 3jrp_A          114 YGP-LLLVASSDGKVSVVEFKENGT----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK  188 (379)
T ss_dssp             GCS-EEEEEETTSEEEEEECCTTSC----CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEE
T ss_pred             CCC-EEEEecCCCcEEEEecCCCCc----eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEE
Confidence             77 899999999999999987643    234466789999999999994            247999999999999999


Q ss_pred             ccCCCCC-CCeeEeeccCCCeeEEEeCCC---CCc--cCCCCceEEeeecce
Q 020480          257 LRTPSVS-KPVQSVVAHQSEVGVSILNAS---FRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       257 ~~~~~~~-~~~~~~~~h~~~v~~i~~~p~---~~~--~~~~d~~~~~~~~~~  302 (325)
                      ++..... ..+..+.+|...|.+++|+|+   +.+  +++.|+.+++|+++.
T Consensus       189 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          189 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             EETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             ecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence            9987631 123566789999999999999   664  888999999998765

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.93  E-value=3.9e-24  Score=204.18  Aligned_cols=212  Identities=14%  Similarity=0.108  Sum_probs=165.5

Q ss_pred             hhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCC
Q 020480           35 VITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANG  114 (325)
Q Consensus        35 ~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (325)
                      +..|...  +.+++|.|+..         ..++.|+.     +..|.+|++.-..                      ...
T Consensus       378 l~~H~~~--V~~v~~~~~~~---------~~l~s~s~-----D~~i~~W~~~~~~----------------------~~~  419 (694)
T 3dm0_A          378 MRAHTDM--VTAIATPIDNA---------DIIVSASR-----DKSIILWKLTKDD----------------------KAY  419 (694)
T ss_dssp             EECCSSC--EEEEECCTTCC---------SEEEEEET-----TSEEEEEECCCST----------------------TCS
T ss_pred             cccCCce--eEEEEecCCCC---------CEEEEEeC-----CCcEEEEEccCCC----------------------ccc
Confidence            4445544  88888888653         24555554     2478999764110                      001


Q ss_pred             ceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeE
Q 020480          115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL  194 (325)
Q Consensus       115 ~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  194 (325)
                      ........+|...|.+++|+|++ .+|++|+.||.|++||+..          ......+.+|...|.+++|+|++. +|
T Consensus       420 ~~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v~vwd~~~----------~~~~~~~~~h~~~v~~~~~s~~~~-~l  487 (694)
T 3dm0_A          420 GVAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGELRLWDLAA----------GVSTRRFVGHTKDVLSVAFSLDNR-QI  487 (694)
T ss_dssp             CEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT----------TEEEEEEECCSSCEEEEEECTTSS-CE
T ss_pred             ccccceecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCC----------CcceeEEeCCCCCEEEEEEeCCCC-EE
Confidence            12333456899999999999998 7999999999999999987          344677889999999999999998 89


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCC-cEEEEEecCCcEEEEEccCCCCCCCeeEeeccC
Q 020480          195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE-YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ  273 (325)
Q Consensus       195 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~  273 (325)
                      ++|+.|++|++||+.....   ........+|...|.+++|+|++. ..+++|+.|++|++||+++.+   ....+.+|.
T Consensus       488 ~s~s~D~~i~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~---~~~~~~~h~  561 (694)
T 3dm0_A          488 VSASRDRTIKLWNTLGECK---YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK---LRSTLAGHT  561 (694)
T ss_dssp             EEEETTSCEEEECTTSCEE---EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC---EEEEECCCS
T ss_pred             EEEeCCCEEEEEECCCCcc---eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc---EEEEEcCCC
Confidence            9999999999999865311   001111246888999999999752 589999999999999999877   377889999


Q ss_pred             CCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          274 SEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       274 ~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      ..|++++|+|++.+  +++.|+++++|+++.
T Consensus       562 ~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~  592 (694)
T 3dm0_A          562 GYVSTVAVSPDGSLCASGGKDGVVLLWDLAE  592 (694)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            99999999999985  889999999999754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.93  E-value=3.5e-24  Score=190.91  Aligned_cols=198  Identities=15%  Similarity=0.176  Sum_probs=151.9

Q ss_pred             CceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEe
Q 020480           43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQI  122 (325)
Q Consensus        43 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (325)
                      .+.+++|+|++.          .++.|..     +..|.+|++.                          .++ ......
T Consensus       125 ~v~~v~~s~dg~----------~l~s~~~-----d~~i~iwd~~--------------------------~~~-~~~~~~  162 (393)
T 1erj_A          125 YIRSVCFSPDGK----------FLATGAE-----DRLIRIWDIE--------------------------NRK-IVMILQ  162 (393)
T ss_dssp             BEEEEEECTTSS----------EEEEEET-----TSCEEEEETT--------------------------TTE-EEEEEC
T ss_pred             eEEEEEECCCCC----------EEEEEcC-----CCeEEEEECC--------------------------CCc-EEEEEc
Confidence            367899999774          4555554     3478888652                          112 122345


Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecC-CCCCeEEEEeCCC
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK-FKEGHLLSGSDDA  201 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~l~s~s~dg  201 (325)
                      +|...|.+++|+|++ .+|++|+.|+.|++||+..        +  .....+ .+...+.+++|+| ++. +|++|+.||
T Consensus       163 ~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~--------~--~~~~~~-~~~~~v~~~~~~~~~~~-~l~~~s~d~  229 (393)
T 1erj_A          163 GHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRT--------G--QCSLTL-SIEDGVTTVAVSPGDGK-YIAAGSLDR  229 (393)
T ss_dssp             CCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT--------T--EEEEEE-ECSSCEEEEEECSTTCC-EEEEEETTS
T ss_pred             cCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCC--------C--eeEEEE-EcCCCcEEEEEECCCCC-EEEEEcCCC
Confidence            799999999999998 6999999999999999987        2  223344 3567899999999 566 999999999


Q ss_pred             cEEEEeCCCCCCCCcccceEee-------ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC---------CC
Q 020480          202 QICLWDINAAPKNKSLEAMQIF-------KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS---------KP  265 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~---------~~  265 (325)
                      .|++||++.+.      .+..+       .+|...|.+++|+|++ .+|++|+.||.|++||++.....         ..
T Consensus       230 ~v~iwd~~~~~------~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~  302 (393)
T 1erj_A          230 AVRVWDSETGF------LVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC  302 (393)
T ss_dssp             CEEEEETTTCC------EEEEEC------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC---------------CE
T ss_pred             cEEEEECCCCc------EEEeecccccCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcc
Confidence            99999998763      23333       5789999999999987 68999999999999999864321         12


Q ss_pred             eeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          266 VQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       266 ~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      ...+.+|...|.+++|+|++.+  +++.|+++++|+.+.
T Consensus       303 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~  341 (393)
T 1erj_A          303 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS  341 (393)
T ss_dssp             EEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred             eEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            4566789999999999999874  889999999998753

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.92  E-value=7e-24  Score=197.73  Aligned_cols=214  Identities=21%  Similarity=0.324  Sum_probs=171.8

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.++++|+.+...+. .+..|.  -++.+++|.|++.          .++.|...     ..+.+++.  .        
T Consensus       323 ~d~~i~~w~~~~~~~~-~~~~~~--~~v~~~~~s~~g~----------~l~~~~~d-----g~v~~~~~--~--------  374 (577)
T 2ymu_A          323 DDKTVKLWNRNGQHLQ-TLTGHS--SSVWGVAFSPDGQ----------TIASASDD-----KTVKLWNR--N--------  374 (577)
T ss_dssp             TTSCEEEEETTSCEEE-EECCCS--SCEEEEEECTTSS----------EEEEEETT-----SEEEEEET--T--------
T ss_pred             CCCeEEEEeCCCCeeE-EEeCCC--CCEEEEEECCCCC----------EEEEEeCC-----CEEEEEcC--C--------
Confidence            4567899998775443 223333  3578899999874          45555542     36777642  1        


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG  176 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  176 (325)
                                       ++. ......|...|.+++|+|++ .+|++|+.|+.|++|+...           ..+..+.+
T Consensus       375 -----------------~~~-~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~-----------~~~~~~~~  424 (577)
T 2ymu_A          375 -----------------GQL-LQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNG-----------QLLQTLTG  424 (577)
T ss_dssp             -----------------CCE-EEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTTC-----------CEEEEEEC
T ss_pred             -----------------CCE-EEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCC-----------CEEEEecC
Confidence                             111 22345799999999999998 7999999999999999654           44677889


Q ss_pred             CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEE
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD  256 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd  256 (325)
                      |...|++++|+|++. +|++++.|+.|++||...       ..+..+.+|...|.+++|+|++ .+|++++.|+.|++||
T Consensus       425 ~~~~v~~~~~s~d~~-~l~~~~~d~~v~~w~~~~-------~~~~~~~~~~~~v~~~~~spd~-~~las~~~d~~i~iw~  495 (577)
T 2ymu_A          425 HSSSVWGVAFSPDDQ-TIASASDDKTVKLWNRNG-------QLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWN  495 (577)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTS-------CEEEEEECCSSCEEEEEECTTS-CEEEEEETTSEEEEEE
T ss_pred             CCCCeEEEEECCCCC-EEEEEcCCCEEEEEECCC-------CEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEc
Confidence            999999999999998 899999999999999753       3577788999999999999997 6999999999999999


Q ss_pred             ccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          257 LRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       257 ~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      . +++   .+..+.+|...|++++|+|+|++  +++.|+++++|+..
T Consensus       496 ~-~~~---~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          496 R-NGQ---LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             T-TSC---EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             C-CCC---EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence            5 444   47888999999999999999985  78899999999853

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.92  E-value=3.5e-25  Score=195.73  Aligned_cols=231  Identities=10%  Similarity=0.109  Sum_probs=168.0

Q ss_pred             hHHHHhhhHhcCh--hHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCc
Q 020480           17 INEEYKIWKKNTP--FLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEN   94 (325)
Q Consensus        17 ~~~~~~iw~~~~~--~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~   94 (325)
                      .+.++++|+....  .+...+..|..  ++.+++|+|++.          .++.++.     +..+.+|++.-.      
T Consensus        31 ~d~~i~iw~~~~~~~~~~~~~~~h~~--~v~~~~~s~~~~----------~l~s~s~-----d~~v~vwd~~~~------   87 (377)
T 3dwl_C           31 ATNQVELYEQDGNGWKHARTFSDHDK--IVTCVDWAPKSN----------RIVTCSQ-----DRNAYVYEKRPD------   87 (377)
T ss_dssp             SSSCBCEEEEETTEEEECCCBCCCSS--CEEEEEECTTTC----------CEEEEET-----TSSEEEC-----------
T ss_pred             CCCEEEEEEccCCceEEEEEEecCCc--eEEEEEEeCCCC----------EEEEEeC-----CCeEEEEEcCCC------
Confidence            4678999999876  55555555554  489999999864          4555553     346888877411      


Q ss_pred             ccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE
Q 020480           95 DARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL  174 (325)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  174 (325)
                                        ...........|...|.+++|+|++ ++|++|+.|+.|++||+...       ........+
T Consensus        88 ------------------~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~  141 (377)
T 3dwl_C           88 ------------------GTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQE-------NDWWVSKHL  141 (377)
T ss_dssp             -------------------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC------------CCCCEEE
T ss_pred             ------------------CceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCc-------ccceeeeEe
Confidence                              0001122345799999999999988 79999999999999999871       112245667


Q ss_pred             ec-CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCC------------CcccceEeeecCCccEEEEEeecCCCc
Q 020480          175 RG-HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN------------KSLEAMQIFKVHEGVVEDVAWHLRHEY  241 (325)
Q Consensus       175 ~~-h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~------------~~~~~~~~~~~~~~~v~~v~~~p~~~~  241 (325)
                      .+ |...|.+++|+|++. +|++++.|+.|++||++.....            ....++..+ +|...|.+++|+|++ .
T Consensus       142 ~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~  218 (377)
T 3dwl_C          142 KRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-N  218 (377)
T ss_dssp             CSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-S
T ss_pred             ecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC-C
Confidence            77 999999999999988 8999999999999998643211            011345556 899999999999987 6


Q ss_pred             EEEEEecCCcEEEEEccCCCCC-CCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480          242 LFGSVGDDQYLLIWDLRTPSVS-KPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       242 ~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                      +|++++.||.|++||+++.... ..+..+.+|..+|.+++|+|++++  +++.++.+ +|+.
T Consensus       219 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~  279 (377)
T 3dwl_C          219 ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQG  279 (377)
T ss_dssp             CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred             EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence            8999999999999999988731 015667889999999999999985  56666555 4443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.92  E-value=1.6e-24  Score=194.17  Aligned_cols=217  Identities=10%  Similarity=0.097  Sum_probs=164.7

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEE-EEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTV-EWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEND   95 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~   95 (325)
                      .+..+++|+.........+..+    ....+ .|.|++.          .++.|+..     ..+.+|++.         
T Consensus        76 ~d~~v~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~----------~l~~~~~d-----g~i~iwd~~---------  127 (420)
T 3vl1_A           76 LDGHDFLFNTIIRDGSKMLKRA----DYTAVDTAKLQMR----------RFILGTTE-----GDIKVLDSN---------  127 (420)
T ss_dssp             ETTEEEEEECCSEETTTTSCSC----CEEEEEEECSSSC----------EEEEEETT-----SCEEEECTT---------
T ss_pred             cCCcEEEEEecccceeeEEecC----CceEEEEEecCCC----------EEEEEECC-----CCEEEEeCC---------
Confidence            3568899998877665544444    23333 4566553          46666542     367777531         


Q ss_pred             cCCCCcccCCCCCCCCCCCceEEEEE-eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE
Q 020480           96 ARHYDDDRSDFGGFGCANGKVQIIQQ-INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL  174 (325)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  174 (325)
                                       .+  +.... ..|.+.|++++|+|++ .+|++|+.||.|++||+..          ...+..+
T Consensus       128 -----------------~~--~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~----------~~~~~~~  177 (420)
T 3vl1_A          128 -----------------FN--LQREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKD----------GSNPRTL  177 (420)
T ss_dssp             -----------------SC--EEEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT----------CCCCEEE
T ss_pred             -----------------Cc--ceeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCC----------CcCceEE
Confidence                             11  22233 3799999999999988 6999999999999999987          3557788


Q ss_pred             ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeec---CC---------------------ccE
Q 020480          175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV---HE---------------------GVV  230 (325)
Q Consensus       175 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~---------------------~~v  230 (325)
                      .+|...|.+++|+|++. +|++++.||.|++||++.+      .++..+..   +.                     ..+
T Consensus       178 ~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v  250 (420)
T 3vl1_A          178 IGHRATVTDIAIIDRGR-NVLSASLDGTIRLWECGTG------TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK  250 (420)
T ss_dssp             ECCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTT------EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred             cCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEeECCCC------ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence            99999999999999998 8999999999999999876      34444443   33                     344


Q ss_pred             EEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-eccCCCeeEEEeCCCCC-c--cCCCCceEEeeecce
Q 020480          231 EDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSEVGVSILNASFR-L--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       231 ~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~i~~~p~~~-~--~~~~d~~~~~~~~~~  302 (325)
                      .+++|+|++ .++++|+.||.|++||+++.+.   +..+ ..|...|.+++|+|++. +  +++.|+.+++|+++.
T Consensus       251 ~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  322 (420)
T 3vl1_A          251 NNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQ---TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS  322 (420)
T ss_dssp             CTTCSSCTT-EEEEEEETTSCEEEEETTTCCE---EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             cceEEcCCC-CEEEEEcCCCeEEEEECCCCce---eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC
Confidence            445557776 6899999999999999998874   4444 56889999999999987 3  888999999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.92  E-value=2.8e-24  Score=191.06  Aligned_cols=233  Identities=13%  Similarity=0.083  Sum_probs=176.8

Q ss_pred             hHHHHhhhHhcChhH-----HHHhhhcCCC---CCceEEEEe----eCCCCCCCCCcceEE-EEEEecCCCCCCCeEEEE
Q 020480           17 INEEYKIWKKNTPFL-----YDLVITHALE---WPSLTVEWL----PDREEPPGKDYSVQK-MILGTHTSENEPNYLMLA   83 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~-----y~~~~~~~~~---~p~~s~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~i~   83 (325)
                      .+..+++|+.+....     ...+..|...   -++.+++|.    |+..          . ++.++..     +.+.+|
T Consensus        89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----------~~l~~~~~d-----g~i~iw  153 (397)
T 1sq9_A           89 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS----------HRLVATDVK-----GTTYIW  153 (397)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C----------EEEEEEETT-----SCEEEE
T ss_pred             CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc----------eEEEEEeCC-----CcEEEE
Confidence            467899999988765     5555555321   468999999    7653          4 6666542     479999


Q ss_pred             EEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEE-----eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCC
Q 020480           84 QVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQ-----INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKH  158 (325)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~  158 (325)
                      ++.-...          +..+....+   .+ ...+..     ..|...|.+++|+|++  ++++|+.||.|++||++. 
T Consensus       154 d~~~~~~----------~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~-  216 (397)
T 1sq9_A          154 KFHPFAD----------ESNSLTLNW---SP-TLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELST-  216 (397)
T ss_dssp             EEESSSS----------HHHHTTTCC---CC-EEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTT-
T ss_pred             eCCcccc----------ccccceeec---cC-cceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCC-
Confidence            8863100          000000000   01 111111     3588999999999987  899999999999999987 


Q ss_pred             CCCCCCCCCCCCcEEEec---C---CCceEEEEecCCCCCeEEEEeCC---CcEEEEeCCCCCCCCcccceEeeec----
Q 020480          159 PSKPPLDGACSPDLRLRG---H---STEGYGLSWSKFKEGHLLSGSDD---AQICLWDINAAPKNKSLEAMQIFKV----  225 (325)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~---h---~~~v~~l~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~----  225 (325)
                               ..++..+..   |   ...|.+++|+|++. +|++++.|   |.|++||++.+      .++..+..    
T Consensus       217 ---------~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~------~~~~~~~~~~~~  280 (397)
T 1sq9_A          217 ---------LRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFG------ERIGSLSVPTHS  280 (397)
T ss_dssp             ---------TEEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTC------CEEEEECBC---
T ss_pred             ---------CceeEEEeccccccccCCccceEEECCCCC-EEEEEecCCCCceEEEEECCCC------cccceeccCccc
Confidence                     355677888   8   99999999999988 89999999   99999999876      45677777    


Q ss_pred             ---------CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee------cc---------------CCC
Q 020480          226 ---------HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV------AH---------------QSE  275 (325)
Q Consensus       226 ---------~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~h---------------~~~  275 (325)
                               |...|.+++|+|++ .+|++++.||.|++||+++.+   .+..+.      +|               ..+
T Consensus       281 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  356 (397)
T 1sq9_A          281 SQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKE---RITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  356 (397)
T ss_dssp             -----CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTE---EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             ccccccccccCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCc---eeEEEecccCcccchhhhhccccccccccCCc
Confidence                     99999999999987 699999999999999999887   477777      77               999


Q ss_pred             eeEEEeCCCC----------C-c-cCCCCceEEeeecc
Q 020480          276 VGVSILNASF----------R-L-SHEDTCTCTHRHSR  301 (325)
Q Consensus       276 v~~i~~~p~~----------~-~-~~~~d~~~~~~~~~  301 (325)
                      |++++|+|++          . + +++.|+.+++|++.
T Consensus       357 v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          357 VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             EEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             eeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence            9999999997          3 3 88899999999875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.92  E-value=2.9e-23  Score=179.86  Aligned_cols=221  Identities=13%  Similarity=0.125  Sum_probs=173.8

Q ss_pred             HHHHhhhHhcChhHHHHhhh---cCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCc
Q 020480           18 NEEYKIWKKNTPFLYDLVIT---HALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEN   94 (325)
Q Consensus        18 ~~~~~iw~~~~~~~y~~~~~---~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~   94 (325)
                      +..+++|+.+.+.....+..   ....-++.+++|.|+..          .++.+..     +..+.+|++.-.      
T Consensus        71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~l~~~~~-----d~~i~~~d~~~~------  129 (337)
T 1gxr_A           71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC----------TLIVGGE-----ASTLSIWDLAAP------  129 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS----------EEEEEES-----SSEEEEEECCCC------
T ss_pred             CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC----------EEEEEcC-----CCcEEEEECCCC------
Confidence            56789999877543322221   12345688999999764          4555553     247888876311      


Q ss_pred             ccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE
Q 020480           95 DARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL  174 (325)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  174 (325)
                                         ..........|...|.+++|+|++ +++++++.||.|++||+..          ...+..+
T Consensus       130 -------------------~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~----------~~~~~~~  179 (337)
T 1gxr_A          130 -------------------TPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHN----------QTLVRQF  179 (337)
T ss_dssp             ---------------------EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT----------TEEEEEE
T ss_pred             -------------------CcceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCC----------Cceeeee
Confidence                               111223445689999999999988 7999999999999999987          3456778


Q ss_pred             ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEE
Q 020480          175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI  254 (325)
Q Consensus       175 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~i  254 (325)
                      .+|...+.+++|+|++. .+++++.||.|++||++.+      ..+..+ .+...+.+++|+|++ .++++++.++.|++
T Consensus       180 ~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~------~~~~~~-~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~  250 (337)
T 1gxr_A          180 QGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREG------RQLQQH-DFTSQIFSLGYCPTG-EWLAVGMESSNVEV  250 (337)
T ss_dssp             CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTT------EEEEEE-ECSSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred             ecccCceEEEEECCCCC-EEEEEecCCcEEEEECCCC------ceEeee-cCCCceEEEEECCCC-CEEEEEcCCCcEEE
Confidence            88999999999999998 8999999999999999876      334444 477889999999997 68999999999999


Q ss_pred             EEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          255 WDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       255 wd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      ||++..+    ...+..|...|.+++|+|++.+  +++.|+.+++|++..
T Consensus       251 ~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~  296 (337)
T 1gxr_A          251 LHVNKPD----KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             EETTSSC----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EECCCCC----eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence            9999876    4567889999999999999984  788899999998754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.92  E-value=2.9e-24  Score=189.01  Aligned_cols=229  Identities=13%  Similarity=0.081  Sum_probs=177.4

Q ss_pred             hHHHHhhhHhcChh--HHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCc
Q 020480           17 INEEYKIWKKNTPF--LYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEN   94 (325)
Q Consensus        17 ~~~~~~iw~~~~~~--~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~   94 (325)
                      .+.++++|+.....  ....+..|..  ++.+++|.|++.          .++.+..     +..+.+|++.-       
T Consensus        28 ~d~~v~i~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~----------~l~~~~~-----dg~i~vwd~~~-------   83 (372)
T 1k8k_C           28 NNHEVHIYEKSGNKWVQVHELKEHNG--QVTGVDWAPDSN----------RIVTCGT-----DRNAYVWTLKG-------   83 (372)
T ss_dssp             SSSEEEEEEEETTEEEEEEEEECCSS--CEEEEEEETTTT----------EEEEEET-----TSCEEEEEEET-------
T ss_pred             CCCEEEEEeCCCCcEEeeeeecCCCC--cccEEEEeCCCC----------EEEEEcC-----CCeEEEEECCC-------
Confidence            45678999988765  4444445543  588999999764          4555553     24788998741       


Q ss_pred             ccCCCCcccCCCCCCCCCCCce-EEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCC-CCcE
Q 020480           95 DARHYDDDRSDFGGFGCANGKV-QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGAC-SPDL  172 (325)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~-~~~~  172 (325)
                                         ++. .......|...|.+++|+|++ .+|++|+.||.|++|++..        ... ....
T Consensus        84 -------------------~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~--------~~~~~~~~  135 (372)
T 1k8k_C           84 -------------------RTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQ--------ENDWWVCK  135 (372)
T ss_dssp             -------------------TEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEET--------TTTEEEEE
T ss_pred             -------------------CeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecC--------CCcceeee
Confidence                               122 223345689999999999998 7999999999999999986        111 0122


Q ss_pred             E-EecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCC------------CcccceEeeecCCccEEEEEeecCC
Q 020480          173 R-LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN------------KSLEAMQIFKVHEGVVEDVAWHLRH  239 (325)
Q Consensus       173 ~-~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~------------~~~~~~~~~~~~~~~v~~v~~~p~~  239 (325)
                      . ..+|...|.+++|+|++. +|++++.||.|++||++.....            ....++..+.+|...|.+++|+|++
T Consensus       136 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  214 (372)
T 1k8k_C          136 HIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG  214 (372)
T ss_dssp             EECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS
T ss_pred             eeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC
Confidence            2 357899999999999988 8999999999999997532100            0114567778899999999999987


Q ss_pred             CcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc-cCCCCceEEeeecce
Q 020480          240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL-SHEDTCTCTHRHSRY  302 (325)
Q Consensus       240 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~~~  302 (325)
                       .+|++++.||.|++||+++++   ++..+..|..+|.+++|+|++.+ .++.|+.+++|+++.
T Consensus       215 -~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~  274 (372)
T 1k8k_C          215 -SRVAWVSHDSTVCLADADKKM---AVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS  274 (372)
T ss_dssp             -SEEEEEETTTEEEEEEGGGTT---EEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             -CEEEEEeCCCEEEEEECCCCc---eeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence             699999999999999999887   48888899999999999999985 555899999999866

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.92  E-value=1.1e-24  Score=192.44  Aligned_cols=205  Identities=15%  Similarity=0.123  Sum_probs=152.8

Q ss_pred             CCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEE-E
Q 020480           42 WPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQII-Q  120 (325)
Q Consensus        42 ~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  120 (325)
                      -++.+++|+|++.          .++.|+     .++.|.+|++.-                          +..+.. .
T Consensus        12 ~~v~~~~~s~~g~----------~l~~~~-----~d~~i~iw~~~~--------------------------~~~~~~~~   50 (377)
T 3dwl_C           12 KPSYEHAFNSQRT----------EFVTTT-----ATNQVELYEQDG--------------------------NGWKHART   50 (377)
T ss_dssp             SCCSCCEECSSSS----------EEECCC-----SSSCBCEEEEET--------------------------TEEEECCC
T ss_pred             CcEEEEEECCCCC----------EEEEec-----CCCEEEEEEccC--------------------------CceEEEEE
Confidence            3688999999874          454443     235788888751                          111111 2


Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCC-CCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA-CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ..+|.+.|++++|+|++ ++|++|+.||.|++||+..        +. ..+...+.+|...|.+++|+|++. +|++|+.
T Consensus        51 ~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~  120 (377)
T 3dwl_C           51 FSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKRP--------DGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSG  120 (377)
T ss_dssp             BCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC--------------CCCCEEECCCCSSCEEEEECCTTSS-CCEEEES
T ss_pred             EecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEEcCC--------CCceeeeeEecccCCceEEEEECCCCC-EEEEEec
Confidence            23699999999999998 7999999999999999987        22 345677789999999999999988 8999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeec-CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC---------------C
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV---------------S  263 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~---------------~  263 (325)
                      |+.|++||++.....   .....+.. |...|.+++|+|++ .+|++++.|+.|++||++....               .
T Consensus       121 d~~i~iwd~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  196 (377)
T 3dwl_C          121 ARVISVCYFEQENDW---WVSKHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFN  196 (377)
T ss_dssp             SSCEEECCC-----C---CCCEEECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEE
T ss_pred             CCeEEEEEECCcccc---eeeeEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchh
Confidence            999999999876421   13556666 99999999999987 6999999999999999964321               0


Q ss_pred             CCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          264 KPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       264 ~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      ..+..+ +|...|.+++|+|++.+  +++.|+++++|+++.
T Consensus       197 ~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~  236 (377)
T 3dwl_C          197 TVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA  236 (377)
T ss_dssp             EEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred             hhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            123444 89999999999999985  788999999998754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.92  E-value=1.4e-24  Score=196.08  Aligned_cols=166  Identities=10%  Similarity=0.111  Sum_probs=134.5

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ..+|...|++|+|+|.++++||+|+.||.|+|||+..        +.......+.+|.+.|++|+|+|.+..+|+||+.|
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~--------~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D  186 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGI--------KDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME  186 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSC--------CSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCC--------CCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence            3568999999999997768999999999999999976        33333445668999999999999654499999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      |+|++||++....    ........+...+.+++|+|++ .+|++|+.||.|++||++...    +..+.+|...|++++
T Consensus       187 ~~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~----~~~~~~h~~~v~~v~  257 (435)
T 4e54_B          187 GTTRLQDFKGNIL----RVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKE----LWNLRMHKKKVTHVA  257 (435)
T ss_dssp             SCEEEEETTSCEE----EEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCB----CCCSBCCSSCEEEEE
T ss_pred             CEEEEeeccCCce----eEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcce----eEEEecccceEEeee
Confidence            9999999986421    1112222334567899999987 699999999999999997643    677789999999999


Q ss_pred             eCCCCC--c-cCCCCceEEeeeccee
Q 020480          281 LNASFR--L-SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       281 ~~p~~~--~-~~~~d~~~~~~~~~~~  303 (325)
                      |+|++.  + +++.|+++++|+++..
T Consensus       258 ~~p~~~~~~~s~s~d~~v~iwd~~~~  283 (435)
T 4e54_B          258 LNPCCDWFLATASVDQTVKIWDLRQV  283 (435)
T ss_dssp             ECTTCSSEEEEEETTSBCCEEETTTC
T ss_pred             ecCCCceEEEEecCcceeeEEecccc
Confidence            999886  2 7889999999998653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.92  E-value=7.9e-25  Score=189.36  Aligned_cols=167  Identities=16%  Similarity=0.179  Sum_probs=134.3

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCC--CCCeEEEEe
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF--KEGHLLSGS  198 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~~l~s~s  198 (325)
                      ..+|.+.|++++|+|++ ++||+|+.|++|++||+..        +....+..+.+|...|.+++|++.  +. +|++|+
T Consensus         9 ~~~H~~~V~~v~~s~~g-~~lasgs~D~~v~lwd~~~--------~~~~~~~~l~gH~~~V~~v~~~~~~~~~-~l~s~s   78 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRN--------GGQILIADLRGHEGPVWQVAWAHPMYGN-ILASCS   78 (316)
T ss_dssp             -----CCEEEEEECGGG-CEEEEEETTTEEEEEEEET--------TEEEEEEEEECCSSCEEEEEECCGGGSS-CEEEEE
T ss_pred             cccccCeEEEeeEcCCC-CEEEEEeCCCeEEEEEecC--------CCcEEEEEEcCCCccEEEEEeCCCCCCC-EEEEEE
Confidence            34799999999999998 7999999999999999976        222345678899999999999863  55 899999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCC-CcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG  277 (325)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  277 (325)
                      .|++|++||++.+..    .....+.+|...|.+++|+|++ ..+|++|+.|++|++||++..........+.+|...|.
T Consensus        79 ~D~~v~iWd~~~~~~----~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~  154 (316)
T 3bg1_A           79 YDRKVIIWREENGTW----EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCN  154 (316)
T ss_dssp             TTSCEEEECCSSSCC----CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBC
T ss_pred             CCCEEEEEECCCCcc----eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcc
Confidence            999999999987532    3456678899999999999973 36899999999999999987642112344568999999


Q ss_pred             EEEeCCCC-----------------C--ccCCCCceEEeeecc
Q 020480          278 VSILNASF-----------------R--LSHEDTCTCTHRHSR  301 (325)
Q Consensus       278 ~i~~~p~~-----------------~--~~~~~d~~~~~~~~~  301 (325)
                      +++|+|++                 .  ++++.|+++++|+.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~  197 (316)
T 3bg1_A          155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEE  197 (316)
T ss_dssp             CCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEEC
T ss_pred             eEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeC
Confidence            99999972                 3  388999999999875

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.92  E-value=2.8e-24  Score=192.57  Aligned_cols=223  Identities=11%  Similarity=0.170  Sum_probs=168.7

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+..+++|+.+...+...+..|..  ++.+++|+|++.          .++.|+.     +..+.+|++.-.        
T Consensus       117 ~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~----------~l~s~s~-----d~~i~iwd~~~~--------  171 (420)
T 3vl1_A          117 TEGDIKVLDSNFNLQREIDQAHVS--EITKLKFFPSGE----------ALISSSQ-----DMQLKIWSVKDG--------  171 (420)
T ss_dssp             TTSCEEEECTTSCEEEEETTSSSS--CEEEEEECTTSS----------EEEEEET-----TSEEEEEETTTC--------
T ss_pred             CCCCEEEEeCCCcceeeecccccC--ccEEEEECCCCC----------EEEEEeC-----CCeEEEEeCCCC--------
Confidence            456899999988777666656654  489999999864          4555554     347888865310        


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG  176 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  176 (325)
                                       ..+.  ...+|.+.|.+++|+|++ .+|++|+.||.|++||+..          ...+..+..
T Consensus       172 -----------------~~~~--~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~----------~~~~~~~~~  221 (420)
T 3vl1_A          172 -----------------SNPR--TLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGT----------GTTIHTFNR  221 (420)
T ss_dssp             -----------------CCCE--EEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTT----------TEEEEEECB
T ss_pred             -----------------cCce--EEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCC----------CceeEEeec
Confidence                             0111  235799999999999988 7999999999999999986          233444443


Q ss_pred             ---C---------------------CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEE
Q 020480          177 ---H---------------------STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED  232 (325)
Q Consensus       177 ---h---------------------~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  232 (325)
                         |                     ...+.+++|+|++. ++++|+.||.|++||++.+..     .......|...|.+
T Consensus       222 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~v~~  295 (420)
T 3vl1_A          222 KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKEQ-----TIQLPSKFTCSCNS  295 (420)
T ss_dssp             TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCCE-----EEEECCTTSSCEEE
T ss_pred             CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECCCCce-----eEEcccccCCCcee
Confidence               2                     34555666788888 899999999999999987632     23333568889999


Q ss_pred             EEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeec-cCCCeeEEEeCCCCCc-cCCCCceEEeeecce
Q 020480          233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-HQSEVGVSILNASFRL-SHEDTCTCTHRHSRY  302 (325)
Q Consensus       233 v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~~~  302 (325)
                      ++|+|++..+|++|+.||.|++||+++.+.  ++..+.. |...|.++.|.+...+ +++.|+++++|++..
T Consensus       296 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          296 LTVDGNNANYIYAGYENGMLAQWDLRSPEC--PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEETTCTTS--CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence            999999855999999999999999998764  5677766 6778888876644333 889999999999754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.92  E-value=6.6e-25  Score=196.18  Aligned_cols=236  Identities=13%  Similarity=0.170  Sum_probs=176.1

Q ss_pred             hHHHHhhhHhcC----hhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCC
Q 020480           17 INEEYKIWKKNT----PFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDS   92 (325)
Q Consensus        17 ~~~~~~iw~~~~----~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~   92 (325)
                      .+..+++|+.+.    ......+..|..  ++.+++|.|+...         .++.++.     +..|.+|++.-.  ..
T Consensus        87 ~dg~v~vw~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~---------~l~s~~~-----dg~v~iwd~~~~--~~  148 (416)
T 2pm9_A           87 DNGSLELYSTNEANNAINSMARFSNHSS--SVKTVKFNAKQDN---------VLASGGN-----NGEIFIWDMNKC--TE  148 (416)
T ss_dssp             SSSCEEEECCSSTTSCCCEEEECCCSSS--CCCEEEECSSSTT---------BEEEECS-----SSCEEBCBTTTT--SS
T ss_pred             cCCeEEEeecccccccccchhhccCCcc--ceEEEEEcCCCCC---------EEEEEcC-----CCeEEEEECCCC--cc
Confidence            456889999887    223334444543  5889999997321         3555543     246777755311  00


Q ss_pred             CcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE
Q 020480           93 ENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL  172 (325)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~  172 (325)
                        ....       +       ..+.......|...|.+++|+|++..+|++|+.||.|++||+..          ...+.
T Consensus       149 --~~~~-------~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~----------~~~~~  202 (416)
T 2pm9_A          149 --SPSN-------Y-------TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA----------KKEVI  202 (416)
T ss_dssp             --CTTT-------C-------CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT----------TEEEE
T ss_pred             --cccc-------c-------cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC----------CCcce
Confidence              0000       0       01111122468899999999999558999999999999999987          33455


Q ss_pred             EEecC------CCceEEEEecCCCCCeEEEEeCCC---cEEEEeCCCCCCCCcccceEeee-cCCccEEEEEeecCCCcE
Q 020480          173 RLRGH------STEGYGLSWSKFKEGHLLSGSDDA---QICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYL  242 (325)
Q Consensus       173 ~~~~h------~~~v~~l~~~p~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~  242 (325)
                      .+..|      ...+.+++|+|++..++++++.|+   .|++||++....     ++..+. +|...|.+++|+|.+..+
T Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~~  277 (416)
T 2pm9_A          203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-----PLQTLNQGHQKGILSLDWCHQDEHL  277 (416)
T ss_dssp             EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-----CSBCCCSCCSSCEEEEEECSSCSSC
T ss_pred             EEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-----CcEEeecCccCceeEEEeCCCCCCe
Confidence            56555      789999999999866899999999   999999997632     355566 899999999999933479


Q ss_pred             EEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCC-Cc--cCCCCceEEeeecceee
Q 020480          243 FGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASF-RL--SHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       243 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~-~~--~~~~d~~~~~~~~~~~~  304 (325)
                      |++++.||.|++||+++++   ++..+..|...|.+++|+|++ .+  +++.|+.+++|++....
T Consensus       278 l~s~~~dg~v~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          278 LLSSGRDNTVLLWNPESAE---QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             EEEEESSSEEEEECSSSCC---EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred             EEEEeCCCCEEEeeCCCCc---cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence            9999999999999999987   488889999999999999998 43  88999999999986544

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.92  E-value=1.2e-23  Score=180.98  Aligned_cols=254  Identities=15%  Similarity=0.193  Sum_probs=179.1

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCC-----C
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLD-----D   91 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~-----~   91 (325)
                      .|.+||||+.++..+...+..+...-++.+++|.|++.          .++.|+..     ..+.+|++.-...     .
T Consensus        43 ~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~----------~l~sgs~D-----g~v~iw~~~~~~~~~~~~~  107 (318)
T 4ggc_A           43 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN----------YLAVGTSS-----AEVQLWDVQQQKRLRNMTS  107 (318)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS----------EEEEEETT-----SEEEEEETTTTEEEEEEEC
T ss_pred             eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC----------EEEEEECC-----CcEEEeecCCceeEEEecC
Confidence            46889999999887776666555566789999999875          45555432     2555554321000     0


Q ss_pred             CCcccCC---------CCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCC
Q 020480           92 SENDARH---------YDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP  162 (325)
Q Consensus        92 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~  162 (325)
                      .......         .....+....+.............+|...+..+.+.+.+ .++++++.||.|++||+....   
T Consensus       108 h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~---  183 (318)
T 4ggc_A          108 HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGE---  183 (318)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBT---
T ss_pred             ccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCc---
Confidence            0000000         000011111122223334444567899999999999998 799999999999999998621   


Q ss_pred             CCCCCCCCcEEEecCCCceEEEEecCCCCCeE--EEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCC
Q 020480          163 PLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL--LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE  240 (325)
Q Consensus       163 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l--~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  240 (325)
                         ...........|.+.|..+.++|.+...+  ++++.++.|++||.+...       ......+...+..+.|+|.+.
T Consensus       184 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~-------~~~~~~~~~~v~~~~~~~~~~  253 (318)
T 4ggc_A          184 ---GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-------CLSAVDAHSQVCSILWSPHYK  253 (318)
T ss_dssp             ---TBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC-------EEEEEECSSCEEEEEEETTTT
T ss_pred             ---ccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc-------ccccccceeeeeeeeeccccc
Confidence               12234556678889999999999887655  356788999999998752       233445777899999999875


Q ss_pred             cEEEE-EecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          241 YLFGS-VGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       241 ~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      .++++ |+.|+.|++||+++++   ++..+.+|.+.|++++|+|+|.+  +++.|+++++|++..
T Consensus       254 ~~~~~sg~~d~~i~iwd~~~~~---~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          254 ELISGHGFAQNQLVIWKYPTMA---KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             EEEEEECTTTCCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             ceEEEEEcCCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            44432 3479999999999988   48999999999999999999985  899999999998753

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.92  E-value=6.3e-24  Score=189.62  Aligned_cols=229  Identities=14%  Similarity=0.195  Sum_probs=172.4

Q ss_pred             hHHHHhhhHhcCh----hHHHHhhhcCCCCCceEEEEee-CCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCC
Q 020480           17 INEEYKIWKKNTP----FLYDLVITHALEWPSLTVEWLP-DREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDD   91 (325)
Q Consensus        17 ~~~~~~iw~~~~~----~~y~~~~~~~~~~p~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~   91 (325)
                      .+..++||+.+..    ..+..+..|.  -++.+++|.| +..          .++.|+.     +..|.+|++.-.  .
T Consensus        55 ~~g~i~v~~~~~~~~~~~~~~~~~~h~--~~V~~~~~~p~~~~----------~l~s~s~-----dg~v~vw~~~~~--~  115 (402)
T 2aq5_A           55 GGGAFLVLPLGKTGRVDKNVPLVCGHT--APVLDIAWCPHNDN----------VIASGSE-----DCTVMVWEIPDG--G  115 (402)
T ss_dssp             SSCCEEEEETTCCEECCTTCCCBCCCS--SCEEEEEECTTCTT----------EEEEEET-----TSEEEEEECCTT--C
T ss_pred             CCCEEEEEECccCCCCCCCCceEecCC--CCEEEEEeCCCCCC----------EEEEEeC-----CCeEEEEEccCC--C
Confidence            4567899987543    2233344454  3599999999 543          4656653     347899977411  0


Q ss_pred             CCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCc
Q 020480           92 SENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPD  171 (325)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~  171 (325)
                      ....                ....+  ....+|...|.+++|+|++.++|++|+.||.|++||+..          ...+
T Consensus       116 ~~~~----------------~~~~~--~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~----------~~~~  167 (402)
T 2aq5_A          116 LVLP----------------LREPV--ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT----------GAAV  167 (402)
T ss_dssp             CSSC----------------BCSCS--EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT----------TEEE
T ss_pred             Cccc----------------cCCce--EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC----------CCcc
Confidence            0000                00111  234579999999999999867999999999999999987          3446


Q ss_pred             EEE--ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEee-ecCCcc-EEEEEeecCCCcEEEEE-
Q 020480          172 LRL--RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIF-KVHEGV-VEDVAWHLRHEYLFGSV-  246 (325)
Q Consensus       172 ~~~--~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~-v~~v~~~p~~~~~l~s~-  246 (325)
                      ..+  .+|...|.+++|+|++. +|++++.||.|++||++.+      ..+..+ .+|... +.+++|+|++ .++++| 
T Consensus       168 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~  239 (402)
T 2aq5_A          168 LTLGPDVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRKG------TVVAEKDRPHEGTRPVHAVFVSEG-KILTTGF  239 (402)
T ss_dssp             EEECTTTCCSCEEEEEECTTSS-CEEEEETTSEEEEEETTTT------EEEEEEECSSCSSSCCEEEECSTT-EEEEEEE
T ss_pred             EEEecCCCCCceEEEEECCCCC-EEEEEecCCcEEEEeCCCC------ceeeeeccCCCCCcceEEEEcCCC-cEEEEec
Confidence            677  78999999999999988 8999999999999999986      456666 677765 8999999986 688888 


Q ss_pred             --ecCCcEEEEEccCCCCCCCeeEe-eccCCCeeEEEeCCCCCc---cCCCCceEEeeecce
Q 020480          247 --GDDQYLLIWDLRTPSVSKPVQSV-VAHQSEVGVSILNASFRL---SHEDTCTCTHRHSRY  302 (325)
Q Consensus       247 --~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~~~  302 (325)
                        +.|+.|++||+++...  ++... ..|...+.+++|+|++.+   +++.|+.+++|++..
T Consensus       240 ~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~  299 (402)
T 2aq5_A          240 SRMSERQVALWDTKHLEE--PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS  299 (402)
T ss_dssp             CTTCCEEEEEEETTBCSS--CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred             cCCCCceEEEEcCccccC--CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence              7999999999998764  34333 357788999999999884   466799999998754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.92  E-value=1.1e-23  Score=185.25  Aligned_cols=239  Identities=11%  Similarity=0.107  Sum_probs=173.7

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.++++|+.+...+...+.......++.+++|.|+..          .++.++.     ++.+.+|++...        
T Consensus        72 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~l~~~~~-----d~~v~i~d~~~~--------  128 (372)
T 1k8k_C           72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK----------KFAVGSG-----SRVISICYFEQE--------  128 (372)
T ss_dssp             TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSS----------EEEEEET-----TSSEEEEEEETT--------
T ss_pred             CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCC----------EEEEEeC-----CCEEEEEEecCC--------
Confidence            45679999987765333333333445689999999764          5666654     247889988622        


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCC--------CCCC
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPL--------DGAC  168 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~--------~~~~  168 (325)
                                     ............|...|.+++|+|++ .+|++|+.||.|++||+.........        ....
T Consensus       129 ---------------~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~  192 (372)
T 1k8k_C          129 ---------------NDWWVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG  192 (372)
T ss_dssp             ---------------TTEEEEEEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTT
T ss_pred             ---------------CcceeeeeeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchh
Confidence                           00011112224589999999999988 79999999999999997531110000        0123


Q ss_pred             CCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec
Q 020480          169 SPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD  248 (325)
Q Consensus       169 ~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~  248 (325)
                      ..+..+.+|...|.+++|+|++. +|++++.||.|++||++.+      .++..+..|...|.+++|+|++ .++++| .
T Consensus       193 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~  263 (372)
T 1k8k_C          193 ELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKK------MAVATLASETLPLLAVTFITES-SLVAAG-H  263 (372)
T ss_dssp             CEEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGGGT------TEEEEEECSSCCEEEEEEEETT-EEEEEE-T
T ss_pred             hheEecCCCCCeEEEEEECCCCC-EEEEEeCCCEEEEEECCCC------ceeEEEccCCCCeEEEEEecCC-CEEEEE-e
Confidence            44566778999999999999998 8999999999999999877      4677888999999999999987 577666 9


Q ss_pred             CCcEEEEEccC--CC-----------------------------CCCCe------eEe-eccCCCeeEEEeC-CCC---C
Q 020480          249 DQYLLIWDLRT--PS-----------------------------VSKPV------QSV-VAHQSEVGVSILN-ASF---R  286 (325)
Q Consensus       249 dg~i~iwd~~~--~~-----------------------------~~~~~------~~~-~~h~~~v~~i~~~-p~~---~  286 (325)
                      |+.|++|+++.  +.                             .....      ..+ .+|..+|++++|+ ++|   .
T Consensus       264 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~  343 (372)
T 1k8k_C          264 DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS  343 (372)
T ss_dssp             TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS
T ss_pred             CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee
Confidence            99999999988  31                             00000      223 4899999999976 565   4


Q ss_pred             --ccCCCCceEEeeeccee
Q 020480          287 --LSHEDTCTCTHRHSRYL  303 (325)
Q Consensus       287 --~~~~~d~~~~~~~~~~~  303 (325)
                        ++++.|+++++|+++..
T Consensus       344 ~l~s~~~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          344 QFCTTGMDGGMSIWDVRSL  362 (372)
T ss_dssp             EEEEEETTSEEEEEEHHHH
T ss_pred             eEEEecCCCceEEEEecCh
Confidence              38999999999998653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.92  E-value=2.1e-24  Score=189.26  Aligned_cols=234  Identities=12%  Similarity=0.208  Sum_probs=173.3

Q ss_pred             HHHHhhhHhcChhHHHHhhhcC---CCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCc
Q 020480           18 NEEYKIWKKNTPFLYDLVITHA---LEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEN   94 (325)
Q Consensus        18 ~~~~~iw~~~~~~~y~~~~~~~---~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~   94 (325)
                      +.++++|+.........+..+.   ..-++.+++|.|+....      ...++.|...     +.|.+|++.        
T Consensus        43 ~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~l~~~~~d-----g~i~v~d~~--------  103 (366)
T 3k26_A           43 SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTS------HPLLAVAGSR-----GIIRIINPI--------  103 (366)
T ss_dssp             TTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTC------CEEEEEEETT-----CEEEEECTT--------
T ss_pred             CCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCC------CCEEEEecCC-----CEEEEEEch--------
Confidence            4479999988766554554443   23468999999985421      1356666542     378887542        


Q ss_pred             ccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE
Q 020480           95 DARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL  174 (325)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  174 (325)
                                        .++. ......|...|.+++|+|.+..+|++|+.||.|++||+..          ...+..+
T Consensus       104 ------------------~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~  154 (366)
T 3k26_A          104 ------------------TMQC-IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT----------DTLVAIF  154 (366)
T ss_dssp             ------------------TCCE-EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT----------TEEEEEE
T ss_pred             ------------------hceE-eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec----------CeEEEEe
Confidence                              1122 2223469999999999994337999999999999999987          3345555


Q ss_pred             ---ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCC-------------------------------------
Q 020480          175 ---RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-------------------------------------  214 (325)
Q Consensus       175 ---~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~-------------------------------------  214 (325)
                         .+|...|.+++|+|++. +|++++.||.|++||++.+...                                     
T Consensus       155 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (366)
T 3k26_A          155 GGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY  233 (366)
T ss_dssp             CSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred             cccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence               68999999999999988 8999999999999998753110                                     


Q ss_pred             -----------------C----------------------cccceEeeecCCccEEEEEeecC--CCcEEEEEecCCcEE
Q 020480          215 -----------------K----------------------SLEAMQIFKVHEGVVEDVAWHLR--HEYLFGSVGDDQYLL  253 (325)
Q Consensus       215 -----------------~----------------------~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~s~~~dg~i~  253 (325)
                                       .                      ....+..+..|...|.+++|+|+  + .+|++|+.||.|+
T Consensus       234 v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~  312 (366)
T 3k26_A          234 VDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVGKLY  312 (366)
T ss_dssp             CCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTSCEE
T ss_pred             EEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCCcEE
Confidence                             0                      00124455667778899999998  6 6999999999999


Q ss_pred             EEEccCCCCCC-CeeEeecc--CCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          254 IWDLRTPSVSK-PVQSVVAH--QSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       254 iwd~~~~~~~~-~~~~~~~h--~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      +||+++++... ....+..|  ...|++++|+|++.+  +++.|+.+++|++.
T Consensus       313 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          313 VWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            99999876321 23456666  789999999999985  88999999999864

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.92  E-value=1.1e-23  Score=188.08  Aligned_cols=168  Identities=18%  Similarity=0.272  Sum_probs=142.1

Q ss_pred             eccCCCeeEEEecC-CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          122 INHDGEVNRARYMP-QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       122 ~~h~~~v~~v~~~~-~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      .+|.+.|++++|+| ++ .+|++|+.||.|++|++.......   ....++..+.+|...|.+++|+|++..+|++|+.|
T Consensus        78 ~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d  153 (402)
T 2aq5_A           78 CGHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIPDGGLVL---PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD  153 (402)
T ss_dssp             CCCSSCEEEEEECTTCT-TEEEEEETTSEEEEEECCTTCCSS---CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred             ecCCCCEEEEEeCCCCC-CEEEEEeCCCeEEEEEccCCCCcc---ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence            47999999999999 55 799999999999999998721100   01156788999999999999999985599999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEee--ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-eccCCC-e
Q 020480          201 AQICLWDINAAPKNKSLEAMQIF--KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSE-V  276 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~-v  276 (325)
                      |.|++||++.+      ..+..+  ..|...|.+++|+|++ .+|++++.||.|++||+++++.   +..+ ..|.+. +
T Consensus       154 g~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~  223 (402)
T 2aq5_A          154 NVILVWDVGTG------AAVLTLGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTV---VAEKDRPHEGTRP  223 (402)
T ss_dssp             SCEEEEETTTT------EEEEEECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEE---EEEEECSSCSSSC
T ss_pred             CEEEEEECCCC------CccEEEecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCce---eeeeccCCCCCcc
Confidence            99999999976      456677  7899999999999987 6899999999999999999873   6776 678776 8


Q ss_pred             eEEEeCCCCCc--cC---CCCceEEeeeccee
Q 020480          277 GVSILNASFRL--SH---EDTCTCTHRHSRYL  303 (325)
Q Consensus       277 ~~i~~~p~~~~--~~---~~d~~~~~~~~~~~  303 (325)
                      .+++|+|++.+  ++   +.++.+++|+++..
T Consensus       224 ~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~  255 (402)
T 2aq5_A          224 VHAVFVSEGKILTTGFSRMSERQVALWDTKHL  255 (402)
T ss_dssp             CEEEECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred             eEEEEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence            99999999986  44   68999999998653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.92  E-value=7.3e-23  Score=182.06  Aligned_cols=230  Identities=14%  Similarity=0.192  Sum_probs=177.5

Q ss_pred             hhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEee-CCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480           15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLP-DREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE   93 (325)
Q Consensus        15 ~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~   93 (325)
                      ...+..+++|..........+..|...  +.+++|+| ++.          .++.|+.     ++.|.+|++.-..    
T Consensus        19 ~~~~~~~~v~~~~~~~~~~~~~~h~~~--v~~~~~s~~~~~----------~l~~~~~-----dg~i~iw~~~~~~----   77 (408)
T 4a11_B           19 RRAESTRRVLGLELNKDRDVERIHGGG--INTLDIEPVEGR----------YMLSGGS-----DGVIVLYDLENSS----   77 (408)
T ss_dssp             HHHHHHHHHHTEEECTTEEECCCCSSC--EEEEEECTTTCC----------EEEEEET-----TSCEEEEECCCCS----
T ss_pred             eeccCcceeeccccCcceeeeeccCCc--EEEEEEecCCCC----------EEEEEcC-----CCeEEEEECCCCc----
Confidence            346778999999887777777777654  89999999 653          5666654     2478898774210    


Q ss_pred             cccCCCCcccCCCCCCCCCCCceEE--EEE------eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCC
Q 020480           94 NDARHYDDDRSDFGGFGCANGKVQI--IQQ------INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLD  165 (325)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~  165 (325)
                                        ....+..  ...      ..|.+.|.+++|+|++..+|++|+.||.|++||+..        
T Consensus        78 ------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--------  131 (408)
T 4a11_B           78 ------------------RQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT--------  131 (408)
T ss_dssp             ------------------SSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTT--------
T ss_pred             ------------------ccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC--------
Confidence                              0011111  111      148999999999996557999999999999999987        


Q ss_pred             CCCCCcEEEecCCCceEEEEecCCCCC--eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEE
Q 020480          166 GACSPDLRLRGHSTEGYGLSWSKFKEG--HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLF  243 (325)
Q Consensus       166 ~~~~~~~~~~~h~~~v~~l~~~p~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  243 (325)
                        ......+ .+...+.++.|+|.+..  ++++++.||.|++||++.+      ..+..+..|...|.+++|+|++..++
T Consensus       132 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~ll  202 (408)
T 4a11_B          132 --LQTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG------SCSHILQGHRQEILAVSWSPRYDYIL  202 (408)
T ss_dssp             --TEEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS------CCCEEECCCCSCEEEEEECSSCTTEE
T ss_pred             --Cccceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc------ceeeeecCCCCcEEEEEECCCCCcEE
Confidence              2333344 37788999999985432  8999999999999999876      34677888999999999999986689


Q ss_pred             EEEecCCcEEEEEccCCCCCCCeeEe---------------eccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          244 GSVGDDQYLLIWDLRTPSVSKPVQSV---------------VAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       244 ~s~~~dg~i~iwd~~~~~~~~~~~~~---------------~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      ++|+.||.|++||++....  ++..+               ..|...|.+++|+|++.+  +++.|+.+++|+++.
T Consensus       203 ~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (408)
T 4a11_B          203 ATASADSRVKLWDVRRASG--CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN  276 (408)
T ss_dssp             EEEETTSCEEEEETTCSSC--CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEEcCCCcEEEEECCCCCc--ccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence            9999999999999987653  23333               578899999999999974  788999999999765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.91  E-value=1.5e-23  Score=187.27  Aligned_cols=221  Identities=16%  Similarity=0.225  Sum_probs=172.2

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+..+++|+.+.......+..|..  ++.+++|.+.            .++.|+..     ..+.+|++..         
T Consensus       154 ~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~------------~l~~~~~d-----g~i~i~d~~~---------  205 (401)
T 4aez_A          154 GNGLVDIYDVESQTKLRTMAGHQA--RVGCLSWNRH------------VLSSGSRS-----GAIHHHDVRI---------  205 (401)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSS--CEEEEEEETT------------EEEEEETT-----SEEEEEETTS---------
T ss_pred             CCCeEEEEECcCCeEEEEecCCCC--ceEEEEECCC------------EEEEEcCC-----CCEEEEeccc---------
Confidence            456889999887766655555554  4778888432            45555542     4788886531         


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG  176 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  176 (325)
                                       ..........|.+.|.+++|+|++ .+|++|+.||.|++||+..          ..+...+.+
T Consensus       206 -----------------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~----------~~~~~~~~~  257 (401)
T 4aez_A          206 -----------------ANHQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARS----------SIPKFTKTN  257 (401)
T ss_dssp             -----------------SSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTC----------SSEEEEECC
T ss_pred             -----------------CcceeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCC----------CCccEEecC
Confidence                             112233456799999999999988 7999999999999999987          455677889


Q ss_pred             CCCceEEEEecCCCCCeEEEEe--CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEE--EecCCcE
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGS--DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGS--VGDDQYL  252 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s--~~~dg~i  252 (325)
                      |...|.+++|+|++..++++|+  .|+.|++||++.+      .++..+. +...|.+++|+|++ ..+++  |+.||.|
T Consensus       258 ~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~------~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~g~~dg~i  329 (401)
T 4aez_A          258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG------ARVNTVD-AGSQVTSLIWSPHS-KEIMSTHGFPDNNL  329 (401)
T ss_dssp             CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC------CEEEEEE-CSSCEEEEEECSSS-SEEEEEECTTTCEE
T ss_pred             CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC------CEEEEEe-CCCcEEEEEECCCC-CeEEEEeecCCCcE
Confidence            9999999999998887888876  7999999999976      3455554 66789999999997 56666  4489999


Q ss_pred             EEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          253 LIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       253 ~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      ++||+++... .....+.+|...|.+++|+|+|.+  +++.|+.+++|++..
T Consensus       330 ~v~~~~~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          330 SIWSYSSSGL-TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             EEEEEETTEE-EEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             EEEecCCccc-eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            9999998652 123446789999999999999984  889999999998754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.91  E-value=1.2e-23  Score=200.70  Aligned_cols=221  Identities=16%  Similarity=0.162  Sum_probs=171.0

Q ss_pred             hhhHHHHhhhHhcChh-----HHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCC
Q 020480           15 RLINEEYKIWKKNTPF-----LYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPL   89 (325)
Q Consensus        15 ~~~~~~~~iw~~~~~~-----~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~   89 (325)
                      ...|.++|+|+.+...     ....+..|..  ++.+++|+|++.          .++.|+.     +..|.+|++.   
T Consensus       401 ~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~--~v~~v~~s~~g~----------~l~sgs~-----Dg~v~vwd~~---  460 (694)
T 3dm0_A          401 ASRDKSIILWKLTKDDKAYGVAQRRLTGHSH--FVEDVVLSSDGQ----------FALSGSW-----DGELRLWDLA---  460 (694)
T ss_dssp             EETTSEEEEEECCCSTTCSCEEEEEEECCSS--CEEEEEECTTSS----------EEEEEET-----TSEEEEEETT---
T ss_pred             EeCCCcEEEEEccCCCcccccccceecCCCC--cEEEEEECCCCC----------EEEEEeC-----CCcEEEEECC---
Confidence            3467889999876532     1223444543  488999999874          4656654     3478888752   


Q ss_pred             CCCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCC
Q 020480           90 DDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACS  169 (325)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~  169 (325)
                                             .+ .......+|.+.|.+++|+|++ .+|++|+.|++|++||...           .
T Consensus       461 -----------------------~~-~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~-----------~  504 (694)
T 3dm0_A          461 -----------------------AG-VSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLG-----------E  504 (694)
T ss_dssp             -----------------------TT-EEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTS-----------C
T ss_pred             -----------------------CC-cceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCC-----------C
Confidence                                   11 1223456899999999999998 7999999999999999865           1


Q ss_pred             CcEEE----ecCCCceEEEEecCCCC-CeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEE
Q 020480          170 PDLRL----RGHSTEGYGLSWSKFKE-GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFG  244 (325)
Q Consensus       170 ~~~~~----~~h~~~v~~l~~~p~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  244 (325)
                      ....+    .+|...|.+++|+|++. ..+++|+.|+.|++||++..      .+...+.+|...|++++|+|++ .+|+
T Consensus       505 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~------~~~~~~~~h~~~v~~v~~spdg-~~l~  577 (694)
T 3dm0_A          505 CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC------KLRSTLAGHTGYVSTVAVSPDG-SLCA  577 (694)
T ss_dssp             EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTS-SEEE
T ss_pred             cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC------cEEEEEcCCCCCEEEEEEeCCC-CEEE
Confidence            11122    36889999999999863 37999999999999999876      4577888999999999999987 6999


Q ss_pred             EEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc-cCCCCceEEeeecce
Q 020480          245 SVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL-SHEDTCTCTHRHSRY  302 (325)
Q Consensus       245 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~~~  302 (325)
                      +|+.||+|++||+++++.   +..+. +...|.+++|+|++.+ .++.+..+++|+++.
T Consensus       578 sg~~Dg~i~iwd~~~~~~---~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~  632 (694)
T 3dm0_A          578 SGGKDGVVLLWDLAEGKK---LYSLE-ANSVIHALCFSPNRYWLCAATEHGIKIWDLES  632 (694)
T ss_dssp             EEETTSBCEEEETTTTEE---EECCB-CSSCEEEEEECSSSSEEEEEETTEEEEEETTT
T ss_pred             EEeCCCeEEEEECCCCce---EEEec-CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCC
Confidence            999999999999998873   55554 4568999999999985 566778899998753

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.91  E-value=4.7e-23  Score=184.02  Aligned_cols=220  Identities=20%  Similarity=0.263  Sum_probs=174.9

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.++++|+.+...+...+... ..-++.+++|+|++.          .+++|+..     ..+.+|++.          
T Consensus       111 ~d~~v~lw~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~----------~l~~~~~d-----g~i~iwd~~----------  164 (401)
T 4aez_A          111 LERNVYVWNADSGSVSALAETD-ESTYVASVKWSHDGS----------FLSVGLGN-----GLVDIYDVE----------  164 (401)
T ss_dssp             ETTEEEEEETTTCCEEEEEECC-TTCCEEEEEECTTSS----------EEEEEETT-----SCEEEEETT----------
T ss_pred             CCCeEEEeeCCCCcEeEeeecC-CCCCEEEEEECCCCC----------EEEEECCC-----CeEEEEECc----------
Confidence            5678999999887655443332 344689999999764          56666643     368888652          


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG  176 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  176 (325)
                                      .++ .......|...|.+++|++   +++++|+.||.|++||++.         .......+.+
T Consensus       165 ----------------~~~-~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~  215 (401)
T 4aez_A          165 ----------------SQT-KLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRI---------ANHQIGTLQG  215 (401)
T ss_dssp             ----------------TCC-EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTS---------SSCEEEEEEC
T ss_pred             ----------------CCe-EEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEeccc---------CcceeeEEcC
Confidence                            111 1223447999999999954   6899999999999999984         1344677889


Q ss_pred             CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe--cCCcEEE
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG--DDQYLLI  254 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~--~dg~i~i  254 (325)
                      |...|.+++|+|++. +|++|+.||.|++||++.+      .++..+..|...|.+++|+|++..++++|+  .|+.|++
T Consensus       216 ~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i  288 (401)
T 4aez_A          216 HSSEVCGLAWRSDGL-QLASGGNDNVVQIWDARSS------IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF  288 (401)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCS------SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred             CCCCeeEEEEcCCCC-EEEEEeCCCeEEEccCCCC------CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence            999999999999988 8999999999999999976      457778889999999999998888998876  7999999


Q ss_pred             EEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--c--CCCCceEEeeecce
Q 020480          255 WDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--S--HEDTCTCTHRHSRY  302 (325)
Q Consensus       255 wd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~--~~~d~~~~~~~~~~  302 (325)
                      ||+++++.   +..+. +...|.+++|+|++..  +  |+.|+.+++|++..
T Consensus       289 ~d~~~~~~---~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          289 WNAATGAR---VNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             EETTTCCE---EEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             EECCCCCE---EEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence            99998873   66654 6788999999999985  3  55899999998764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.7e-24  Score=188.04  Aligned_cols=163  Identities=13%  Similarity=0.058  Sum_probs=125.2

Q ss_pred             EEEeccCCCeeEEEecC--CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEE
Q 020480          119 IQQINHDGEVNRARYMP--QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLL  195 (325)
Q Consensus       119 ~~~~~h~~~v~~v~~~~--~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~  195 (325)
                      .....|.+.|.+++|+|  ++ .++++|+.||.|++||+..        +  ....... .|...+.+++|+|++. +|+
T Consensus       119 ~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~--------~--~~~~~~~~~~~~~i~~~~~~pdg~-~la  186 (343)
T 3lrv_A          119 EIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYED--------D--SQYIVHSAKSDVEYSSGVLHKDSL-LLA  186 (343)
T ss_dssp             EEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSS--------S--CEEEEECCCSSCCCCEEEECTTSC-EEE
T ss_pred             EeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCC--------C--cEEEEEecCCCCceEEEEECCCCC-EEE
Confidence            34457889999999999  88 7999999999999999987        2  2233342 4556899999999998 899


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceEeeec-CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC
Q 020480          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS  274 (325)
Q Consensus       196 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~  274 (325)
                      +|+.||.|++||++.+..     ....+.. |...|.+++|+|++ .+|++++ |+.|++||+++.+....+..+..|..
T Consensus       187 sg~~dg~i~iwd~~~~~~-----~~~~~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~  259 (343)
T 3lrv_A          187 LYSPDGILDVYNLSSPDQ-----ASSRFPVDEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEF  259 (343)
T ss_dssp             EECTTSCEEEEESSCTTS-----CCEECCCCTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC---
T ss_pred             EEcCCCEEEEEECCCCCC-----CccEEeccCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCcceeecccccccc
Confidence            999999999999998743     1155676 99999999999987 6888888 55999999999875323333333445


Q ss_pred             Cee--EEEeCCCCCc--cCCC-CceEEeeec
Q 020480          275 EVG--VSILNASFRL--SHED-TCTCTHRHS  300 (325)
Q Consensus       275 ~v~--~i~~~p~~~~--~~~~-d~~~~~~~~  300 (325)
                      .+.  +++|+|+|++  +++. ++.+++|++
T Consensus       260 ~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          260 KTGTVTYDIDDSGKNMIAYSNESNSLTIYKF  290 (343)
T ss_dssp             --CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence            554  6999999996  4345 899999976

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.91  E-value=5.1e-23  Score=183.04  Aligned_cols=234  Identities=18%  Similarity=0.268  Sum_probs=175.4

Q ss_pred             hHHHHhhhHhcChhHHHHhhh-----------cCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEE
Q 020480           17 INEEYKIWKKNTPFLYDLVIT-----------HALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQV   85 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~-----------~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~   85 (325)
                      .+..+++|+......-..+..           .....++.+++|.|+...         .++.++.     ++.+.+|++
T Consensus        64 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------~l~s~~~-----d~~i~iwd~  129 (408)
T 4a11_B           64 SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG---------MFTSSSF-----DKTLKVWDT  129 (408)
T ss_dssp             TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT---------CEEEEET-----TSEEEEEET
T ss_pred             CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc---------EEEEEeC-----CCeEEEeeC
Confidence            467799999887654433321           113446899999995432         3555543     347888865


Q ss_pred             ECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCC--cEEEEEecCCeEEEEeCCCCCCCCC
Q 020480           86 QLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNP--FLIATKTVSAEVYVFDYSKHPSKPP  163 (325)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~la~g~~dg~v~vwd~~~~~~~~~  163 (325)
                      .                          .  .+....+.+...+.++.|++.+.  .++++|+.+|.|++||+..      
T Consensus       130 ~--------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~------  175 (408)
T 4a11_B          130 N--------------------------T--LQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS------  175 (408)
T ss_dssp             T--------------------------T--TEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS------
T ss_pred             C--------------------------C--CccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC------
Confidence            2                          1  12334566889999999999642  4899999999999999987      


Q ss_pred             CCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCC----------cccceEeeecCCccEEEE
Q 020480          164 LDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK----------SLEAMQIFKVHEGVVEDV  233 (325)
Q Consensus       164 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~----------~~~~~~~~~~~~~~v~~v  233 (325)
                          ...+..+.+|...|.+++|+|++..++++|+.||.|++||++......          ..........|...|.++
T Consensus       176 ----~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  251 (408)
T 4a11_B          176 ----GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL  251 (408)
T ss_dssp             ----SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred             ----cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence                355778889999999999999998669999999999999998764210          001112235788999999


Q ss_pred             EeecCCCcEEEEEecCCcEEEEEccCCCCC--------------------------------------------CCeeEe
Q 020480          234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVS--------------------------------------------KPVQSV  269 (325)
Q Consensus       234 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~--------------------------------------------~~~~~~  269 (325)
                      +|+|++ .+|++++.||.|++||+++++..                                            .++..+
T Consensus       252 ~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~  330 (408)
T 4a11_B          252 CFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML  330 (408)
T ss_dssp             EECTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE
T ss_pred             EEcCCC-CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee
Confidence            999987 69999999999999999875421                                            234556


Q ss_pred             eccCCCeeEEEeCCCCCc--cCCCCceEEeeeccee
Q 020480          270 VAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       270 ~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~  303 (325)
                      .+|...|++++|+|++.+  +++.|+.+++|++...
T Consensus       331 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~  366 (408)
T 4a11_B          331 KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY  366 (408)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred             ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence            779999999999999974  8889999999998664

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.91  E-value=2.8e-23  Score=177.55  Aligned_cols=157  Identities=8%  Similarity=0.001  Sum_probs=120.7

Q ss_pred             EEeccCCCeeEEEecC---CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC---CceEEEEecCCCCCe
Q 020480          120 QQINHDGEVNRARYMP---QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS---TEGYGLSWSKFKEGH  193 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~---~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~p~~~~~  193 (325)
                      ....|...++.++|++   ++ .+||+|+.|++|+|||+.+          .+.+.++.+|.   ..+.+++|+|++. +
T Consensus       173 s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~T----------Gk~l~tL~g~~~~v~~v~~vafSpdG~-~  240 (356)
T 2w18_A          173 NQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKT----------GQLLKKMHIDDSYQASVCHKAYSEMGL-L  240 (356)
T ss_dssp             EEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTT----------CCEEEEEECCC---CCCEEEEEEETTE-E
T ss_pred             eeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCC----------CcEEEEEcCCCcceeeeEEEEECCCCC-E
Confidence            3457888999999998   45 7999999999999999987          34577787654   4677889999887 4


Q ss_pred             E------------EEEeCCCcEEEEeCCCCCCCCcccceEee-----ecCCccEEEEEeecCCCcEEEEEecCCcEEEEE
Q 020480          194 L------------LSGSDDAQICLWDINAAPKNKSLEAMQIF-----KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD  256 (325)
Q Consensus       194 l------------~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd  256 (325)
                      +            ++|+.|++|++||..++.      .+..+     .+|...+.+..++  + .++|+|+.|++|+|||
T Consensus       241 lvs~s~~~~~w~laSGs~D~tIklWd~~tgk------~l~v~~~~~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWD  311 (356)
T 2w18_A          241 FIVLSHPCAKESESLRSPVFQLIVINPKTTL------SVGVMLYCLPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWD  311 (356)
T ss_dssp             EEEEC------------CCEEEEEEETTTTE------EEEEEEECCCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEE
T ss_pred             EEEeccCCCcceeeccCCCcEEEEEECCCCE------EEEEEEeeccCCCcceeEccccC--C-CEEEEEcCCCcEEEEE
Confidence            4            678899999999998763      33332     3566555555544  4 5899999999999999


Q ss_pred             ccCCCCCCCeeEeeccCCCee-EEEeCCCCCc--cCCCCceEEeeec
Q 020480          257 LRTPSVSKPVQSVVAHQSEVG-VSILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       257 ~~~~~~~~~~~~~~~h~~~v~-~i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                      ++++++   +.++.+|...+. +++|+|+|++  +|+.|+++++|+.
T Consensus       312 l~tGk~---l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          312 LLLGQC---TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TTTCSE---EEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCCcE---EEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            999985   888888887655 6899999984  8999999999985

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.91  E-value=4.3e-23  Score=184.38  Aligned_cols=238  Identities=18%  Similarity=0.201  Sum_probs=159.9

Q ss_pred             hhhhhhhhhhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEE
Q 020480            7 EMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQ   86 (325)
Q Consensus         7 ~~~~~~~~~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~   86 (325)
                      +.+....+.....-+.+|+.+..  ...+..+...-++.+++|+|++..         .++.|+.     +..+.+|++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~---------~l~~~~~-----dg~i~iw~~~   76 (425)
T 1r5m_A           13 TVERETQEDDTNSIDSSDDLDGF--VKILKEIVKLDNIVSSTWNPLDES---------ILAYGEK-----NSVARLARIV   76 (425)
T ss_dssp             ---------------------CC--CEECEEEEECSCCSEEEECSSCTT---------EEEEEET-----BTEEEEEEEE
T ss_pred             hhhhhcccCccccccccccchhh--hhheeeeeccCceEEEEECCCCCc---------EEEEecC-----CceEEEEEEe
Confidence            33333334444444556665442  223444443446889999998741         4555553     3478999882


Q ss_pred             CCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEE-----------eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeC
Q 020480           87 LPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQ-----------INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDY  155 (325)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~  155 (325)
                      .....            +.      ..-.+.....           .+|.+.|++++|+|++ .+|++|+.||.|++|+.
T Consensus        77 ~~~~~------------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~~~  137 (425)
T 1r5m_A           77 ETDQE------------GK------KYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG-NSIVTGVENGELRLWNK  137 (425)
T ss_dssp             EC------------------------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS-SEEEEEETTSCEEEEET
T ss_pred             cccCC------------cc------ccccccccccccccccccccccCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeC
Confidence            10000            00      0000001111           1267799999999988 79999999999999994


Q ss_pred             CCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCcc------
Q 020480          156 SKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGV------  229 (325)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------  229 (325)
                      ..           ..+..+.+|...|.+++|+|++. +|++++.||.|++||++.+      ..+..+..+...      
T Consensus       138 ~~-----------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~  199 (425)
T 1r5m_A          138 TG-----------ALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISG------TVMQHFELKETGGSSINA  199 (425)
T ss_dssp             TS-----------CEEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTT------EEEEEECCC---------
T ss_pred             CC-----------CeeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCC------cEEEEeeccccCccceee
Confidence            43           45677889999999999999998 8999999999999999876      445566666655      


Q ss_pred             ---------EEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEee
Q 020480          230 ---------VEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHR  298 (325)
Q Consensus       230 ---------v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~  298 (325)
                               +.+++|+|++  .+++++.+|.|++||++..+   ++..+..|...|.+++|+|++.+  +++.|+.+++|
T Consensus       200 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~  274 (425)
T 1r5m_A          200 ENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKT---PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW  274 (425)
T ss_dssp             ------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSS---CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             ccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCc---eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence                     8999999974  68899999999999999887   47888899999999999999974  78889999999


Q ss_pred             ecce
Q 020480          299 HSRY  302 (325)
Q Consensus       299 ~~~~  302 (325)
                      +++.
T Consensus       275 d~~~  278 (425)
T 1r5m_A          275 HGGN  278 (425)
T ss_dssp             CSSS
T ss_pred             ECCC
Confidence            8754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.9e-23  Score=201.09  Aligned_cols=232  Identities=18%  Similarity=0.278  Sum_probs=179.2

Q ss_pred             hHHHHhhhHhc--ChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCc
Q 020480           17 INEEYKIWKKN--TPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEN   94 (325)
Q Consensus        17 ~~~~~~iw~~~--~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~   94 (325)
                      .+.+++||+..  .......+..|.  -++.+++|+|+...        ..++.|+.     ++.|.+|++.        
T Consensus        29 ~dg~I~vwd~~~~~~~~~~~l~~h~--~~V~~l~~s~~~~~--------~~l~s~s~-----Dg~I~vwd~~--------   85 (753)
T 3jro_A           29 SDKTIKIFEVEGETHKLIDTLTGHE--GPVWRVDWAHPKFG--------TILASCSY-----DGKVLIWKEE--------   85 (753)
T ss_dssp             TTTEEEEEEEETTEEEEEEEECCCS--SCEEEEEECCTTSC--------SEEEEEET-----TSCEEEEEEE--------
T ss_pred             CCCcEEEEecCCCCCccceeccCCc--CceEEEEecCCCCC--------CEEEEEeC-----CCeEEEEECC--------
Confidence            46789999987  333334444454  45899999987322        25666654     3479999875        


Q ss_pred             ccCCCCcccCCCCCCCCCCCce-EEEEEeccCCCeeEEEecCC--CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCc
Q 020480           95 DARHYDDDRSDFGGFGCANGKV-QIIQQINHDGEVNRARYMPQ--NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPD  171 (325)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~v~~~~~--~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~  171 (325)
                                        .++. .......|...|++++|+|+  + .++++|+.||.|++||+..        +.....
T Consensus        86 ------------------~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~--------~~~~~~  138 (753)
T 3jro_A           86 ------------------NGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKE--------NGTTSP  138 (753)
T ss_dssp             ------------------TTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCS--------SSCCCC
T ss_pred             ------------------CCcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeec--------CCCcce
Confidence                              1222 23334569999999999998  6 7999999999999999987        333456


Q ss_pred             EEEecCCCceEEEEecCC-------------CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecC
Q 020480          172 LRLRGHSTEGYGLSWSKF-------------KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR  238 (325)
Q Consensus       172 ~~~~~h~~~v~~l~~~p~-------------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  238 (325)
                      ..+.+|...|.+++|+|.             +. .+++|+.||.|++||++.+...  ..+...+.+|...|.+++|+|+
T Consensus       139 ~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~--~~~~~~~~~h~~~V~~l~~sp~  215 (753)
T 3jro_A          139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPT  215 (753)
T ss_dssp             EEEECCSSCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCC
T ss_pred             eEeecCCCceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCccc--ceeeeeecCCCCcEEEEEeccC
Confidence            677899999999999994             56 8999999999999999876432  1345677889999999999998


Q ss_pred             C--CcEEEEEecCCcEEEEEccCCCCC--CCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          239 H--EYLFGSVGDDQYLLIWDLRTPSVS--KPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       239 ~--~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      +  ..++++|+.||.|++||+++....  ..+.....|...|++++|+|+|.+  +++.|+.+++|++.
T Consensus       216 ~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          216 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             CSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             CCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            3  379999999999999999986421  123333568899999999999985  78899999999976

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.91  E-value=1.4e-23  Score=182.44  Aligned_cols=174  Identities=16%  Similarity=0.166  Sum_probs=135.6

Q ss_pred             CCCCCCCceEEEEEeccCCCeeEEEecCCCC-cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEe
Q 020480          108 GFGCANGKVQIIQQINHDGEVNRARYMPQNP-FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSW  186 (325)
Q Consensus       108 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  186 (325)
                      .|+.............|...|..++|++++. .++++++.|+.|++||+..          ...+..+.+|.+.|++++|
T Consensus       154 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~----------~~~~~~~~~h~~~v~~~~~  223 (340)
T 4aow_A          154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN----------CKLKTNHIGHTGYLNTVTV  223 (340)
T ss_dssp             EECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT----------TEEEEEECCCSSCEEEEEE
T ss_pred             EEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC----------CceeeEecCCCCcEEEEEE
Confidence            3443333333334456899999999998753 4688999999999999987          4556778899999999999


Q ss_pred             cCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC---
Q 020480          187 SKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS---  263 (325)
Q Consensus       187 ~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~---  263 (325)
                      +|++. +|++|+.||.|++||++..      .++..+.. ...|.+++|+|++  .+++++.|+.|++||++.....   
T Consensus       224 s~~~~-~l~s~s~Dg~i~iwd~~~~------~~~~~~~~-~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~  293 (340)
T 4aow_A          224 SPDGS-LCASGGKDGQAMLWDLNEG------KHLYTLDG-GDIINALCFSPNR--YWLCAATGPSIKIWDLEGKIIVDEL  293 (340)
T ss_dssp             CTTSS-EEEEEETTCEEEEEETTTT------EEEEEEEC-SSCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             CCCCC-EEEEEeCCCeEEEEEeccC------ceeeeecC-CceEEeeecCCCC--ceeeccCCCEEEEEECCCCeEEEec
Confidence            99998 8999999999999999976      44555554 4679999999975  3557788999999999876420   


Q ss_pred             ---CCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          264 ---KPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       264 ---~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                         .......+|...|++++|+|+|++  +++.|+++++|++.
T Consensus       294 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          294 KQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             CCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             cccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence               011223568899999999999984  88999999999875

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.91  E-value=1.1e-23  Score=184.27  Aligned_cols=235  Identities=13%  Similarity=0.110  Sum_probs=168.1

Q ss_pred             hHHHHhhhHhcChh-HHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcc
Q 020480           17 INEEYKIWKKNTPF-LYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEND   95 (325)
Q Consensus        17 ~~~~~~iw~~~~~~-~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~   95 (325)
                      .+.++++|+.+... ....+..|..  ++.+++|.|.......    ...++.+..     +..+.+|++.-.       
T Consensus        88 ~dg~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~s~~----~~~l~~~~~-----d~~i~vwd~~~~-------  149 (357)
T 3i2n_A           88 FGGNLHIWNLEAPEMPVYSVKGHKE--IINAIDGIGGLGIGEG----APEIVTGSR-----DGTVKVWDPRQK-------  149 (357)
T ss_dssp             TTSCEEEECTTSCSSCSEEECCCSS--CEEEEEEESGGGCC-C----CCEEEEEET-----TSCEEEECTTSC-------
T ss_pred             CCCeEEEEeCCCCCccEEEEEeccc--ceEEEeeccccccCCC----ccEEEEEeC-----CCeEEEEeCCCC-------
Confidence            56789999998765 4444555544  4778877652110000    124555554     236788765311       


Q ss_pred             cCCCCcccCCCCCCCCCCCceEEEEEecc----CCCeeEEE----ecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCC
Q 020480           96 ARHYDDDRSDFGGFGCANGKVQIIQQINH----DGEVNRAR----YMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA  167 (325)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~v~----~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~  167 (325)
                                       ...+..  ...|    ...|.++.    |+|++ .++++|+.||.|++||++.        + 
T Consensus       150 -----------------~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~--------~-  200 (357)
T 3i2n_A          150 -----------------DDPVAN--MEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRN--------M-  200 (357)
T ss_dssp             -----------------SSCSEE--ECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTT--------T-
T ss_pred             -----------------CCccee--ccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECcc--------C-
Confidence                             001111  1122    34788888    67777 7999999999999999987        2 


Q ss_pred             CCCcEEEecCCCceEEEEecC---CCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEE
Q 020480          168 CSPDLRLRGHSTEGYGLSWSK---FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFG  244 (325)
Q Consensus       168 ~~~~~~~~~h~~~v~~l~~~p---~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  244 (325)
                       . ......|...|.+++|+|   ++. .+++|+.||.|++||++.......+ ....+.+|...|.+++|+|++..+|+
T Consensus       201 -~-~~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~  276 (357)
T 3i2n_A          201 -A-LRWETNIKNGVCSLEFDRKDISMN-KLVATSLEGKFHVFDMRTQHPTKGF-ASVSEKAHKSTVWQVRHLPQNRELFL  276 (357)
T ss_dssp             -E-EEEEEECSSCEEEEEESCSSSSCC-EEEEEESTTEEEEEEEEEEETTTEE-EEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred             -c-eeeecCCCCceEEEEcCCCCCCCC-EEEEECCCCeEEEEeCcCCCcccce-eeeccCCCcCCEEEEEECCCCCcEEE
Confidence             2 244567899999999999   777 8999999999999999876432211 11234589999999999998755899


Q ss_pred             EEecCCcEEEEEccCCCCC----------------CCeeEeeccCCCeeEEEeCCCCCc---cCCCCceEEeeecce
Q 020480          245 SVGDDQYLLIWDLRTPSVS----------------KPVQSVVAHQSEVGVSILNASFRL---SHEDTCTCTHRHSRY  302 (325)
Q Consensus       245 s~~~dg~i~iwd~~~~~~~----------------~~~~~~~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~~~  302 (325)
                      +|+.||.|++||++.....                ..+..+.+|..+|++++|+|++.+   +++.|+.+++|++..
T Consensus       277 ~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          277 TAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             EEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             EEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence            9999999999999976532                246667889999999999999984   578999999998764

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.9e-23  Score=178.11  Aligned_cols=242  Identities=13%  Similarity=0.101  Sum_probs=178.0

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCc-c
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEN-D   95 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~-~   95 (325)
                      .+..+++|+.+...+...+..|.  -++.+++|.|+..          .++.+...     ..+.++++.-....... .
T Consensus        37 ~dg~v~vw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~----------~l~~~~~d-----g~i~~~~~~~~~~~~~~~~   99 (313)
T 3odt_A           37 RDGTVRLWSKDDQWLGTVVYTGQ--GFLNSVCYDSEKE----------LLLFGGKD-----TMINGVPLFATSGEDPLYT   99 (313)
T ss_dssp             TTSEEEEEEESSSEEEEEEEECS--SCEEEEEEETTTT----------EEEEEETT-----SCEEEEETTCCTTSCC-CE
T ss_pred             cCCcEEEEECCCCEEEEEeecCC--ccEEEEEECCCCC----------EEEEecCC-----CeEEEEEeeecCCCCcccc
Confidence            56789999998876666666664  4589999999764          44455432     24555544211100000 0


Q ss_pred             cC---------CC-------CcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCC
Q 020480           96 AR---------HY-------DDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP  159 (325)
Q Consensus        96 ~~---------~~-------~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~  159 (325)
                      ..         ..       ...++.+..|+   ..-.......|...|.++.|.|....++++++.||.|++||..   
T Consensus       100 ~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---  173 (313)
T 3odt_A          100 LIGHQGNVCSLSFQDGVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---  173 (313)
T ss_dssp             ECCCSSCEEEEEEETTEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---
T ss_pred             hhhcccCEEEEEecCCEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---
Confidence            00         00       00112233333   1122233456999999999998444799999999999999943   


Q ss_pred             CCCCCCCCCCCcEEEec-CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecC
Q 020480          160 SKPPLDGACSPDLRLRG-HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR  238 (325)
Q Consensus       160 ~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  238 (325)
                               .....+.. |...+.+++|+|++.  +++++.||.|++||++.+      .++..+.+|...|.+++|+|+
T Consensus       174 ---------~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~  236 (313)
T 3odt_A          174 ---------KVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTG------DVLRTYEGHESFVYCIKLLPN  236 (313)
T ss_dssp             ---------EEEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECTT
T ss_pred             ---------ceEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCch------hhhhhhhcCCceEEEEEEecC
Confidence                     23555666 899999999999876  899999999999999876      467788899999999999998


Q ss_pred             CCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc-cCCCCceEEeeeccee
Q 020480          239 HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL-SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       239 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~~~~  303 (325)
                      +  .+++++.||.|++||+++++   .+..+..|..+|.+++|+|++++ +++.|+.+++|+++.-
T Consensus       237 ~--~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          237 G--DIVSCGEDRTVRIWSKENGS---LKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             S--CEEEEETTSEEEEECTTTCC---EEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGG
T ss_pred             C--CEEEEecCCEEEEEECCCCc---eeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCC
Confidence            7  48899999999999999987   48888889999999999999986 8889999999997653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.4e-22  Score=177.58  Aligned_cols=236  Identities=11%  Similarity=0.093  Sum_probs=181.3

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.++++|+.+...+...+.   ..-++.+++|.|+..          .++++..........+.++++...........
T Consensus        94 ~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~----------~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~  160 (369)
T 3zwl_B           94 ADYSIKLWDVSNGQCVATWK---SPVPVKRVEFSPCGN----------YFLAILDNVMKNPGSINIYEIERDSATHELTK  160 (369)
T ss_dssp             TTTEEEEEETTTCCEEEEEE---CSSCEEEEEECTTSS----------EEEEEECCBTTBCCEEEEEEEEECTTTCCEEE
T ss_pred             CCCeEEEEECCCCcEEEEee---cCCCeEEEEEccCCC----------EEEEecCCccCCCCEEEEEEecCCccceeecc
Confidence            46789999988765544333   445689999999874          56666654344456899998863321111100


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCC--CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDG--EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL  174 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  174 (325)
                      .              ......  ....|.+  .+.+++|+|++ .+|++|+.||.|++||+..         ....+..+
T Consensus       161 ~--------------~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~---------~~~~~~~~  214 (369)
T 3zwl_B          161 V--------------SEEPIH--KIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSN---------NYEYVDSI  214 (369)
T ss_dssp             E--------------CSSCSE--EEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTT---------TTEEEEEE
T ss_pred             c--------------ccceee--eccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCC---------CcEeEEEE
Confidence            0              011122  2345555  99999999988 6999999999999999975         12446778


Q ss_pred             ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC----
Q 020480          175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ----  250 (325)
Q Consensus       175 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg----  250 (325)
                      ..|...|.+++|+|++. +|++++.||.|++||++.+      ..+..+. +...+..++|+|++ .++++++.++    
T Consensus       215 ~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~------~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~  285 (369)
T 3zwl_B          215 DLHEKSISDMQFSPDLT-YFITSSRDTNSFLVDVSTL------QVLKKYE-TDCPLNTAVITPLK-EFIILGGGQEAKDV  285 (369)
T ss_dssp             ECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTC------CEEEEEE-CSSCEEEEEECSSS-SEEEEEECCC----
T ss_pred             ecCCCceeEEEECCCCC-EEEEecCCceEEEEECCCC------ceeeeec-CCCCceeEEecCCC-ceEEEeecCCCceE
Confidence            88999999999999998 8999999999999999876      3455555 77889999999997 6888888888    


Q ss_pred             ----------cEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeeccee
Q 020480          251 ----------YLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       251 ----------~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~  303 (325)
                                .+++||+++.+   ++..+.+|...|++++|+|++.+  +++.|+.+++|++..-
T Consensus       286 ~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          286 TTTSANEGKFEARFYHKIFEE---EIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             ---------CEEEEEETTTCC---EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             EEEecCCCcceeEEEecCCCc---chhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence                      89999999987   48888999999999999999985  8889999999987653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=7.1e-23  Score=197.10  Aligned_cols=212  Identities=15%  Similarity=0.172  Sum_probs=166.7

Q ss_pred             HhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCC
Q 020480           34 LVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCAN  113 (325)
Q Consensus        34 ~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (325)
                      .+..|..  ++.+++|+|++.          .++.|..     +..|.+|++.-                          
T Consensus         4 ~l~gH~~--~V~~l~~s~dg~----------~latg~~-----dg~I~vwd~~~--------------------------   40 (753)
T 3jro_A            4 IANAHNE--LIHDAVLDYYGK----------RLATCSS-----DKTIKIFEVEG--------------------------   40 (753)
T ss_dssp             ----CCC--CEEEECCCSSSC----------CEEEEET-----TTEEEEEEEET--------------------------
T ss_pred             ecccCcc--eeEEEEECCCCC----------eEEEEEC-----CCcEEEEecCC--------------------------
Confidence            4455654  489999999874          4666654     34899998751                          


Q ss_pred             CceEE-EEEeccCCCeeEEEecCC--CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCC-
Q 020480          114 GKVQI-IQQINHDGEVNRARYMPQ--NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF-  189 (325)
Q Consensus       114 ~~~~~-~~~~~h~~~v~~v~~~~~--~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-  189 (325)
                      +.... ....+|.+.|++++|+|+  + ++|++|+.||.|++||+..        +.......+.+|...|++++|+|+ 
T Consensus        41 ~~~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~vwd~~~--------~~~~~~~~~~~h~~~V~~v~~sp~~  111 (753)
T 3jro_A           41 ETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEEN--------GRWSQIAVHAVHSASVNSVQWAPHE  111 (753)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEEEEEEET--------TEEEEEEEECCCSSCEEEEEECCGG
T ss_pred             CCCccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEEEEECCC--------CcccccccccCCCCCeEEEEECCCC
Confidence            12222 234469999999999987  6 7999999999999999987        333356777889999999999999 


Q ss_pred             -CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecC------------CCcEEEEEecCCcEEEEE
Q 020480          190 -KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR------------HEYLFGSVGDDQYLLIWD  256 (325)
Q Consensus       190 -~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~------------~~~~l~s~~~dg~i~iwd  256 (325)
                       +. .+++|+.||.|++||++....    .....+.+|...|.+++|+|.            +..++++|+.||.|++||
T Consensus       112 ~~~-~l~sgs~dg~I~vwdl~~~~~----~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd  186 (753)
T 3jro_A          112 YGP-LLLVASSDGKVSVVEFKENGT----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK  186 (753)
T ss_dssp             GCS-EEEEEETTSEEEEEECCSSSC----CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEE
T ss_pred             CCC-EEEEEeCCCcEEEEEeecCCC----cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEe
Confidence             77 899999999999999987643    234456789999999999994            236899999999999999


Q ss_pred             ccCCCCC-CCeeEeeccCCCeeEEEeCCC---CCc--cCCCCceEEeeecce
Q 020480          257 LRTPSVS-KPVQSVVAHQSEVGVSILNAS---FRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       257 ~~~~~~~-~~~~~~~~h~~~v~~i~~~p~---~~~--~~~~d~~~~~~~~~~  302 (325)
                      +++.... .....+.+|..+|++++|+|+   +.+  +++.|+++++|+.+.
T Consensus       187 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~  238 (753)
T 3jro_A          187 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  238 (753)
T ss_dssp             EETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred             ccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence            9987531 234566889999999999999   664  889999999999765

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.91  E-value=1e-22  Score=176.71  Aligned_cols=173  Identities=16%  Similarity=0.203  Sum_probs=141.3

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCC--CCCeEEEEe
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF--KEGHLLSGS  198 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~~l~s~s  198 (325)
                      ..+|.+.|++++|+|++ .+||+|+.||.|++|++....      ........+.+|...|++++|+|.  +. +|++|+
T Consensus         7 ~~gH~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~d~~-~l~s~~   78 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDT------SNWELSDSWRAHDSSIVAIDWASPEYGR-IIASAS   78 (351)
T ss_dssp             ECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSS------CCEEEEEEEECCSSCEEEEEECCGGGCS-EEEEEE
T ss_pred             CcccccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCC------CcceecceeccCCCcEEEEEEcCCCCCC-EEEEEc
Confidence            35799999999999988 799999999999999998611      112345667899999999999994  66 899999


Q ss_pred             CCCcEEEEeCCCCCCC---CcccceEeeecCCccEEEEEeecC--CCcEEEEEecCCcEEEEEccCCCCCCC--------
Q 020480          199 DDAQICLWDINAAPKN---KSLEAMQIFKVHEGVVEDVAWHLR--HEYLFGSVGDDQYLLIWDLRTPSVSKP--------  265 (325)
Q Consensus       199 ~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~s~~~dg~i~iwd~~~~~~~~~--------  265 (325)
                      .||.|++||++.+...   ....++..+..|...|.+++|+|+  + .++++++.||.|++||+++.+....        
T Consensus        79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  157 (351)
T 3f3f_A           79 YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMK  157 (351)
T ss_dssp             TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred             CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence            9999999999876432   111346677889999999999998  6 6999999999999999987653211        


Q ss_pred             -------------------------------------------------eeEeeccCCCeeEEEeCCCC----C--ccCC
Q 020480          266 -------------------------------------------------VQSVVAHQSEVGVSILNASF----R--LSHE  290 (325)
Q Consensus       266 -------------------------------------------------~~~~~~h~~~v~~i~~~p~~----~--~~~~  290 (325)
                                                                       +..+.+|...|++++|+|++    .  ++++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~  237 (351)
T 3f3f_A          158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC  237 (351)
T ss_dssp             SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred             ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence                                                             33446789999999999997    4  3889


Q ss_pred             CCceEEeeecce
Q 020480          291 DTCTCTHRHSRY  302 (325)
Q Consensus       291 ~d~~~~~~~~~~  302 (325)
                      .|+.+++|+++.
T Consensus       238 ~dg~i~iwd~~~  249 (351)
T 3f3f_A          238 KDGRIRIFKITE  249 (351)
T ss_dssp             TTSCEEEEEEEE
T ss_pred             CCCeEEEEeCCC
Confidence            999999999876

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.91  E-value=1.3e-22  Score=177.90  Aligned_cols=212  Identities=17%  Similarity=0.222  Sum_probs=159.2

Q ss_pred             HHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCC
Q 020480           32 YDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGC  111 (325)
Q Consensus        32 y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (325)
                      +..+..|..  ++.+++|+|+...       ...++.|...     ..|.+|++.-.                       
T Consensus        32 ~~~~~~h~~--~v~~~~~~~~~~~-------g~~l~~~~~d-----g~i~iw~~~~~-----------------------   74 (368)
T 3mmy_A           32 IEVTSSPDD--SIGCLSFSPPTLP-------GNFLIAGSWA-----NDVRCWEVQDS-----------------------   74 (368)
T ss_dssp             EECSSCCSS--CEEEEEECCTTSS-------SEEEEEEETT-----SEEEEEEECTT-----------------------
T ss_pred             eEeccCCCC--ceEEEEEcCCCCC-------ceEEEEECCC-----CcEEEEEcCCC-----------------------
Confidence            334455544  4899999998411       0356666543     47999988411                       


Q ss_pred             CCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEe--cCC
Q 020480          112 ANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSW--SKF  189 (325)
Q Consensus       112 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~p~  189 (325)
                        +.........|.+.|++++|+|++ .+|++|+.||.|++||+..           .....+.+|...|.+++|  +|+
T Consensus        75 --~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~-----------~~~~~~~~~~~~v~~~~~~~~~~  140 (368)
T 3mmy_A           75 --GQTIPKAQQMHTGPVLDVCWSDDG-SKVFTASCDKTAKMWDLSS-----------NQAIQIAQHDAPVKTIHWIKAPN  140 (368)
T ss_dssp             --SCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT-----------TEEEEEEECSSCEEEEEEEECSS
T ss_pred             --CceeEEEeccccCCEEEEEECcCC-CEEEEEcCCCcEEEEEcCC-----------CCceeeccccCceEEEEEEeCCC
Confidence              122223456799999999999988 7999999999999999987           223446789999999999  888


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCCCCCcc----------------------------------------------------
Q 020480          190 KEGHLLSGSDDAQICLWDINAAPKNKSL----------------------------------------------------  217 (325)
Q Consensus       190 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~----------------------------------------------------  217 (325)
                      +. +|++++.||.|++||++.+.....+                                                    
T Consensus       141 ~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (368)
T 3mmy_A          141 YS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVA  219 (368)
T ss_dssp             CE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEE
T ss_pred             CC-EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEE
Confidence            87 8999999999999999875421000                                                    


Q ss_pred             --------------------------------cceEeeecCCc------------cEEEEEeecCCCcEEEEEecCCcEE
Q 020480          218 --------------------------------EAMQIFKVHEG------------VVEDVAWHLRHEYLFGSVGDDQYLL  253 (325)
Q Consensus       218 --------------------------------~~~~~~~~~~~------------~v~~v~~~p~~~~~l~s~~~dg~i~  253 (325)
                                                      .....+.+|..            .|.+++|+|++ .+|++|+.||.|+
T Consensus       220 ~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~  298 (368)
T 3mmy_A          220 IFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFS  298 (368)
T ss_dssp             EEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEE
T ss_pred             EcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEE
Confidence                                            11223344443            69999999987 6899999999999


Q ss_pred             EEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeee
Q 020480          254 IWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRH  299 (325)
Q Consensus       254 iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~  299 (325)
                      +||+++++   .+..+..|..+|++++|+|+|.+  +++.|+..+.++
T Consensus       299 iwd~~~~~---~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~  343 (368)
T 3mmy_A          299 FWDKDART---KLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHE  343 (368)
T ss_dssp             EEETTTTE---EEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred             EEECCCCc---EEEEecCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence            99999887   48888899999999999999985  666666555544

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.91  E-value=7e-23  Score=179.50  Aligned_cols=161  Identities=17%  Similarity=0.170  Sum_probs=133.7

Q ss_pred             cCCCeeEEEecCCC---CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecC-CCCCeEEEEeC
Q 020480          124 HDGEVNRARYMPQN---PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK-FKEGHLLSGSD  199 (325)
Q Consensus       124 h~~~v~~v~~~~~~---~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~l~s~s~  199 (325)
                      |.+.|++++|+|++   ..+|++|+.||.|++||+..          ...+..+.+|...|.+++|+| ++. +|++|+.
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~-~l~s~~~  136 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT----------MQCIKHYVGHGNAINELKFHPRDPN-LLLSVSK  136 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT----------CCEEEEEESCCSCEEEEEECSSCTT-EEEEEET
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh----------ceEeeeecCCCCcEEEEEECCCCCC-EEEEEeC
Confidence            78999999999983   26999999999999999987          355778889999999999999 666 9999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEee---ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC-------------
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIF---KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-------------  263 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-------------  263 (325)
                      ||.|++||++.+      ..+..+   .+|...|.+++|+|++ .+|++++.||.|++||+++.+..             
T Consensus       137 dg~i~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  209 (366)
T 3k26_A          137 DHALRLWNIQTD------TLVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK  209 (366)
T ss_dssp             TSCEEEEETTTT------EEEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGG
T ss_pred             CCeEEEEEeecC------eEEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCC
Confidence            999999999876      345555   6799999999999987 69999999999999999876420             


Q ss_pred             ------------CCeeEeeccCCCeeEEEeCCCCCccCCCCceEEeeecce
Q 020480          264 ------------KPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHSRY  302 (325)
Q Consensus       264 ------------~~~~~~~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~~~  302 (325)
                                  .......+|...|.+++|+++-.++++.|+.+++|+++.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~  260 (366)
T 3k26_A          210 TNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGK  260 (366)
T ss_dssp             CSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESS
T ss_pred             CcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCC
Confidence                        011222348999999999944334889999999999754

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.90  E-value=7.3e-22  Score=171.03  Aligned_cols=203  Identities=14%  Similarity=0.151  Sum_probs=162.5

Q ss_pred             CCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEE
Q 020480           41 EWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ  120 (325)
Q Consensus        41 ~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (325)
                      .-++.+++|.|++.          .++.+.      ++.+.+|++.-..                      ....+....
T Consensus        51 ~~~v~~~~~~~~~~----------~l~~~~------dg~i~iw~~~~~~----------------------~~~~~~~~~   92 (337)
T 1gxr_A           51 GEVVCAVTISNPTR----------HVYTGG------KGCVKVWDISHPG----------------------NKSPVSQLD   92 (337)
T ss_dssp             SSCCCEEEECSSSS----------EEEEEC------BSEEEEEETTSTT----------------------CCSCSEEEE
T ss_pred             CCceEEEEEecCCc----------EEEEcC------CCeEEEEECCCCC----------------------ceeeeeccc
Confidence            45688999999874          444443      2578888763110                      012233333


Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ...|...|.+++|+|++ ++|++|+.||.|++|++..        +.......+..|...+.+++|+|++. ++++++.|
T Consensus        93 ~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d  162 (337)
T 1gxr_A           93 CLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAA--------PTPRIKAELTSSAPACYALAISPDSK-VCFSCCSD  162 (337)
T ss_dssp             CSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCC--------C--EEEEEEECSSSCEEEEEECTTSS-EEEEEETT
T ss_pred             ccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCC--------CCcceeeecccCCCceEEEEECCCCC-EEEEEeCC
Confidence            44799999999999988 7999999999999999987        33334567788999999999999988 89999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      |.|++||++.+      ..+..+..|...|.+++|+|++ .++++++.||.|++||+++.+.   +..+ .+...+.+++
T Consensus       163 g~v~~~d~~~~------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~---~~~~-~~~~~v~~~~  231 (337)
T 1gxr_A          163 GNIAVWDLHNQ------TLVRQFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQ---LQQH-DFTSQIFSLG  231 (337)
T ss_dssp             SCEEEEETTTT------EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE---EEEE-ECSSCEEEEE
T ss_pred             CcEEEEeCCCC------ceeeeeecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCce---Eeee-cCCCceEEEE
Confidence            99999999876      4577788899999999999987 6999999999999999998873   4444 4788999999


Q ss_pred             eCCCCCc--cCCCCceEEeeecce
Q 020480          281 LNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       281 ~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      |+|++.+  +++.++.+++|+++.
T Consensus       232 ~s~~~~~l~~~~~~~~i~~~~~~~  255 (337)
T 1gxr_A          232 YCPTGEWLAVGMESSNVEVLHVNK  255 (337)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTS
T ss_pred             ECCCCCEEEEEcCCCcEEEEECCC
Confidence            9999985  777899999998754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.6e-23  Score=187.17  Aligned_cols=161  Identities=14%  Similarity=0.087  Sum_probs=140.4

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ...|...|.+++|+|++ .+|++++.||.|++||+..          ......+.+|...|.+++|+|++  .+++++.|
T Consensus       243 ~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~----------~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d  309 (425)
T 1r5m_A          243 LIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGN----------GNSQNCFYGHSQSIVSASWVGDD--KVISCSMD  309 (425)
T ss_dssp             ECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSS----------BSCSEEECCCSSCEEEEEEETTT--EEEEEETT
T ss_pred             eccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCC----------CccceEecCCCccEEEEEECCCC--EEEEEeCC
Confidence            34689999999999988 6999999999999999987          45577888999999999999987  79999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC-----------------C
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-----------------S  263 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-----------------~  263 (325)
                      |.|++||++.+      ..+..+..|...|.+++|+|++ .+|++++.||.|++||+++...                 .
T Consensus       310 ~~i~i~d~~~~------~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (425)
T 1r5m_A          310 GSVRLWSLKQN------TLLALSIVDGVPIFAGRISQDG-QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPI  382 (425)
T ss_dssp             SEEEEEETTTT------EEEEEEECTTCCEEEEEECTTS-SEEEEEETTSCEEEEECHHHHC--------------CEEC
T ss_pred             CcEEEEECCCC------cEeEecccCCccEEEEEEcCCC-CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccc
Confidence            99999999876      5677788899999999999987 6999999999999999987650                 0


Q ss_pred             CCeeEeeccCC--CeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          264 KPVQSVVAHQS--EVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       264 ~~~~~~~~h~~--~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      .++..+..|..  .|++++|+|++++  +++.|+.+++|++.
T Consensus       383 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          383 PLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             CEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             hhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            13677788866  9999999999984  78899999999864

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.90  E-value=8.7e-22  Score=172.04  Aligned_cols=205  Identities=13%  Similarity=0.237  Sum_probs=158.8

Q ss_pred             CCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEE
Q 020480           42 WPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQ  121 (325)
Q Consensus        42 ~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (325)
                      -++.+++|+|++.         ..++.|+.  ...++.+.+|++.                          .++......
T Consensus        19 ~~v~~~~~~p~~~---------~l~~~~s~--~~~d~~v~iw~~~--------------------------~~~~~~~~~   61 (357)
T 3i2n_A           19 YTVFDCKWVPCSA---------KFVTMGNF--ARGTGVIQLYEIQ--------------------------HGDLKLLRE   61 (357)
T ss_dssp             SCEEEEEECTTSS---------EEEEEEC----CCCEEEEEEEEC--------------------------SSSEEEEEE
T ss_pred             CceEEEEEcCCCc---------eEEEecCc--cCCCcEEEEEeCC--------------------------CCcccceee
Confidence            3589999999874         23344433  1234689999874                          234455556


Q ss_pred             eccCCCeeEEEecCCC--CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEE------ecCCCCCe
Q 020480          122 INHDGEVNRARYMPQN--PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLS------WSKFKEGH  193 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~--~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~------~~p~~~~~  193 (325)
                      .+|...|.+++|+|++  ..+|++|+.||.|++|++..        +. .++..+.+|...|.+++      |+|++. +
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~  131 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEA--------PE-MPVYSVKGHKEIINAIDGIGGLGIGEGAP-E  131 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTS--------CS-SCSEEECCCSSCEEEEEEESGGGCC-CCC-E
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCC--------CC-ccEEEEEecccceEEEeeccccccCCCcc-E
Confidence            6899999999999983  37999999999999999987        21 25778899999999995      567887 8


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCc----cEEEEE----eecCCCcEEEEEecCCcEEEEEccCCCCCCC
Q 020480          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG----VVEDVA----WHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP  265 (325)
Q Consensus       194 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~v~~v~----~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  265 (325)
                      |++++.||.|++||++.+..     ++..+..|..    .+.+++    |+|++ .++++++.||.|++||+++.+    
T Consensus       132 l~~~~~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~----  201 (357)
T 3i2n_A          132 IVTGSRDGTVKVWDPRQKDD-----PVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMA----  201 (357)
T ss_dssp             EEEEETTSCEEEECTTSCSS-----CSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTE----
T ss_pred             EEEEeCCCeEEEEeCCCCCC-----cceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCc----
Confidence            99999999999999998642     3445544443    788888    67776 699999999999999999887    


Q ss_pred             eeEeeccCCCeeEEEeCC---CCCc--cCCCCceEEeeeccee
Q 020480          266 VQSVVAHQSEVGVSILNA---SFRL--SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       266 ~~~~~~h~~~v~~i~~~p---~~~~--~~~~d~~~~~~~~~~~  303 (325)
                      ......|...|.+++|+|   ++..  +++.|+.+++|+++..
T Consensus       202 ~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  244 (357)
T 3i2n_A          202 LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ  244 (357)
T ss_dssp             EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred             eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence            344467899999999999   6763  8889999999997653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.90  E-value=3.9e-23  Score=186.49  Aligned_cols=253  Identities=12%  Similarity=0.104  Sum_probs=168.9

Q ss_pred             hHHHHhhhHhcChh-----------HHHHhhhcCCC----------CCceEEEEeeCCCCCCCCCcceEEEEEEecCCCC
Q 020480           17 INEEYKIWKKNTPF-----------LYDLVITHALE----------WPSLTVEWLPDREEPPGKDYSVQKMILGTHTSEN   75 (325)
Q Consensus        17 ~~~~~~iw~~~~~~-----------~y~~~~~~~~~----------~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (325)
                      .+..++||+.+...           ++..+..|..+          -++.+++|.|+....        .++.++.    
T Consensus        48 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~--------~l~s~s~----  115 (447)
T 3dw8_B           48 KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA--------QFLLSTN----  115 (447)
T ss_dssp             TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS--------EEEEEEC----
T ss_pred             CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcc--------eEEEeCC----
Confidence            56789999988765           34455555522          468899999986321        4555543    


Q ss_pred             CCCeEEEEEEECCCCCCCcccCCCCcccCCC----CCCCCCCCce---------EE--EEEeccCCCeeEEEecCCCCcE
Q 020480           76 EPNYLMLAQVQLPLDDSENDARHYDDDRSDF----GGFGCANGKV---------QI--IQQINHDGEVNRARYMPQNPFL  140 (325)
Q Consensus        76 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---------~~--~~~~~h~~~v~~v~~~~~~~~~  140 (325)
                       +..|.+|++.-....  ..........+.+    .......+.+         ..  ....+|...|.+++|+|++ .+
T Consensus       116 -d~~i~iw~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~  191 (447)
T 3dw8_B          116 -DKTIKLWKISERDKR--PEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY-ET  191 (447)
T ss_dssp             -SSCEEEEEEEEEEEE--EECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-SE
T ss_pred             -CCeEEEEecccccCC--cceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC-CE
Confidence             347888887521100  0000000000000    0000011111         11  1124699999999999988 68


Q ss_pred             EEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE-------EEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCC
Q 020480          141 IATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-------RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK  213 (325)
Q Consensus       141 la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~  213 (325)
                      |++| .||.|++||+...         .....       .+.+|...|.+++|+|++..+|++|+.||.|++||++.+..
T Consensus       192 l~s~-~d~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  261 (447)
T 3dw8_B          192 YLSA-DDLRINLWHLEIT---------DRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL  261 (447)
T ss_dssp             EEEE-CSSEEEEEETTEE---------EEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred             EEEe-CCCeEEEEECCCC---------CceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence            9998 7999999999841         11111       24589999999999999844999999999999999998742


Q ss_pred             CCcccceEeeecCCc------------cEEEEEeecCCCcEEEEEecCCcEEEEEccC-CCCCCCeeEeeccCCC-----
Q 020480          214 NKSLEAMQIFKVHEG------------VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT-PSVSKPVQSVVAHQSE-----  275 (325)
Q Consensus       214 ~~~~~~~~~~~~~~~------------~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~-----  275 (325)
                      ..  .....+..|..            .|.+++|+|++ .+|++++. +.|++||++. ++   ++..+..|...     
T Consensus       262 ~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~---~~~~~~~~~~~~~~l~  334 (447)
T 3dw8_B          262 CD--RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMENR---PVETYQVHEYLRSKLC  334 (447)
T ss_dssp             SC--TTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCSS---CSCCEESCGGGTTTHH
T ss_pred             cc--ceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCcc---ccceeecccccccccc
Confidence            11  12456677765            89999999987 68889988 9999999997 55   47777777532     


Q ss_pred             ----------eeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          276 ----------VGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       276 ----------v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                                +..++|+|++.+  +++.|+.+++|++..
T Consensus       335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~  373 (447)
T 3dw8_B          335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNT  373 (447)
T ss_dssp             HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTT
T ss_pred             ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCC
Confidence                      334999999984  889999999999754

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.90  E-value=1.4e-22  Score=184.16  Aligned_cols=229  Identities=16%  Similarity=0.170  Sum_probs=176.4

Q ss_pred             hhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcc
Q 020480           16 LINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEND   95 (325)
Q Consensus        16 ~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~   95 (325)
                      ..+.++++|+.....+...+..|..  ++.+++|.|+.           .++.|+..     ..+.+|++.         
T Consensus       139 s~dg~i~vwd~~~~~~~~~~~~h~~--~V~~l~~~~~~-----------~l~s~s~d-----g~i~vwd~~---------  191 (464)
T 3v7d_B          139 ADDKMIRVYDSINKKFLLQLSGHDG--GVWALKYAHGG-----------ILVSGSTD-----RTVRVWDIK---------  191 (464)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECSTT-----------EEEEEETT-----SCEEEEETT---------
T ss_pred             cCCCcEEEEECCCCcEEEEEeCCCc--CEEEEEEcCCC-----------EEEEEeCC-----CCEEEEECC---------
Confidence            3567899999888776666666654  48899998864           35555543     468888652         


Q ss_pred             cCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecC--CCCcEEEEEecCCeEEEEeCCCCCCCCCCC--------
Q 020480           96 ARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMP--QNPFLIATKTVSAEVYVFDYSKHPSKPPLD--------  165 (325)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~~la~g~~dg~v~vwd~~~~~~~~~~~--------  165 (325)
                                       .++ ......+|.+.|.+++|++  ++ .++++|+.||.|++||+..........        
T Consensus       192 -----------------~~~-~~~~~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~  252 (464)
T 3v7d_B          192 -----------------KGC-CTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV  252 (464)
T ss_dssp             -----------------TTE-EEEEECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEE
T ss_pred             -----------------CCc-EEEEECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceE
Confidence                             122 2223446999999999995  44 799999999999999998632111000        


Q ss_pred             -----CCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCC
Q 020480          166 -----GACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE  240 (325)
Q Consensus       166 -----~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  240 (325)
                           ........+.+|...+.++.  +++. ++++|+.||.|++||++.+      .++..+.+|...|.+++|+|++ 
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~~~~~d~~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~-  322 (464)
T 3v7d_B          253 FHTPEENPYFVGVLRGHMASVRTVS--GHGN-IVVSGSYDNTLIVWDVAQM------KCLYILSGHTDRIYSTIYDHER-  322 (464)
T ss_dssp             ESCGGGCTTEEEEECCCSSCEEEEE--EETT-EEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEEETTT-
T ss_pred             eeccCCCeEEEEEccCccceEEEEc--CCCC-EEEEEeCCCeEEEEECCCC------cEEEEecCCCCCEEEEEEcCCC-
Confidence                 00011446778999998885  4566 8999999999999999876      5678888999999999999987 


Q ss_pred             cEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCccCCCCceEEeeeccee
Q 020480          241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHSRYL  303 (325)
Q Consensus       241 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~~~~  303 (325)
                      ..+++|+.||.|++||+++++   ++..+.+|...|.+++|++.-.++++.|+++++|+++..
T Consensus       323 ~~l~sg~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~  382 (464)
T 3v7d_B          323 KRCISASMDTTIRIWDLENGE---LMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDY  382 (464)
T ss_dssp             TEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTC
T ss_pred             CEEEEEeCCCcEEEEECCCCc---EEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCC
Confidence            689999999999999999987   488889999999999999755569999999999998653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.90  E-value=1.2e-22  Score=180.44  Aligned_cols=232  Identities=13%  Similarity=0.075  Sum_probs=173.2

Q ss_pred             hHHHHhhhHhcChh------HHHHhhhcCCCCCceEEEEeeC----CCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEE
Q 020480           17 INEEYKIWKKNTPF------LYDLVITHALEWPSLTVEWLPD----REEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQ   86 (325)
Q Consensus        17 ~~~~~~iw~~~~~~------~y~~~~~~~~~~p~~s~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~   86 (325)
                      .+.++++|+.....      +...+..|.  -++.+++|.|+    +..       ...++.+..     ++.|.+|++.
T Consensus        34 ~dg~i~iw~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~g~~-------~~~l~s~~~-----dg~i~iw~~~   99 (397)
T 1sq9_A           34 GDGYLKVWDNKLLDNENPKDKSYSHFVHK--SGLHHVDVLQAIERDAFE-------LCLVATTSF-----SGDLLFYRIT   99 (397)
T ss_dssp             TTSEEEEEESBCCTTCCGGGGEEEEECCT--TCEEEEEEEEEEETTTEE-------EEEEEEEET-----TSCEEEEEEE
T ss_pred             CCCEEEEEECCCcccccCCCcceEEecCC--CcEEEEEEecccccCCcc-------ccEEEEEcC-----CCCEEEEEcc
Confidence            45689999998876      444444444  35899999997    410       024555554     3479999885


Q ss_pred             CCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEecc-----CCCeeEEEec----CCCCcE-EEEEecCCeEEEEeCC
Q 020480           87 LPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINH-----DGEVNRARYM----PQNPFL-IATKTVSAEVYVFDYS  156 (325)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~v~~~----~~~~~~-la~g~~dg~v~vwd~~  156 (325)
                      -..                      ...+........|     ...|.+++|+    |++ .+ |++|+.||.|++||+.
T Consensus       100 ~~~----------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~  156 (397)
T 1sq9_A          100 RED----------------------ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFH  156 (397)
T ss_dssp             ECT----------------------TTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEE
T ss_pred             CCc----------------------ccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCC
Confidence            220                      0112223334456     5999999999    888 57 9999999999999987


Q ss_pred             C------CCCCCCCCCCCCCcEEE-------ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEee
Q 020480          157 K------HPSKPPLDGACSPDLRL-------RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIF  223 (325)
Q Consensus       157 ~------~~~~~~~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  223 (325)
                      .      ....     ...+...+       ..|...|.+++|+|++  ++++++.||.|++||++.+      .++..+
T Consensus       157 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~------~~~~~~  223 (397)
T 1sq9_A          157 PFADESNSLTL-----NWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTL------RPLYNF  223 (397)
T ss_dssp             SSSSHHHHTTT-----CCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTT------EEEEEE
T ss_pred             cccccccccee-----eccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCC------ceeEEE
Confidence            5      1110     11222255       4488999999999988  7999999999999999876      467777


Q ss_pred             ec---C---CccEEEEEeecCCCcEEEEEecC---CcEEEEEccCCCCCCCeeEeec-------------cCCCeeEEEe
Q 020480          224 KV---H---EGVVEDVAWHLRHEYLFGSVGDD---QYLLIWDLRTPSVSKPVQSVVA-------------HQSEVGVSIL  281 (325)
Q Consensus       224 ~~---~---~~~v~~v~~~p~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~-------------h~~~v~~i~~  281 (325)
                      ..   |   ...|.+++|+|++ .+|++++.|   |.|++||+++.+   ++..+..             |...|.+++|
T Consensus       224 ~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  299 (397)
T 1sq9_A          224 ESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGE---RIGSLSVPTHSSQASLGEFAHSSWVMSLSF  299 (397)
T ss_dssp             ECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCC---EEEEECBC--------CCBSBSSCEEEEEE
T ss_pred             eccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCc---ccceeccCcccccccccccccCCcEEEEEE
Confidence            87   8   9999999999987 699999999   999999999887   4788887             9999999999


Q ss_pred             CCCCCc--cCCCCceEEeeecce
Q 020480          282 NASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       282 ~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      +|++.+  +++.|+.+++|+++.
T Consensus       300 ~~~~~~l~~~~~dg~i~iwd~~~  322 (397)
T 1sq9_A          300 NDSGETLCSAGWDGKLRFWDVKT  322 (397)
T ss_dssp             CSSSSEEEEEETTSEEEEEETTT
T ss_pred             CCCCCEEEEEeCCCeEEEEEcCC
Confidence            999985  788999999999753

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.90  E-value=7.8e-22  Score=171.31  Aligned_cols=215  Identities=13%  Similarity=0.142  Sum_probs=169.1

Q ss_pred             hHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCC
Q 020480           30 FLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGF  109 (325)
Q Consensus        30 ~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (325)
                      .|...|..|...  +.+++|+|+..         ..++.|+.     +..|++|++.-..                    
T Consensus        29 ~l~~tL~GH~~~--V~~v~~sp~~~---------~~l~S~s~-----D~~i~vWd~~~~~--------------------   72 (340)
T 4aow_A           29 TLRGTLKGHNGW--VTQIATTPQFP---------DMILSASR-----DKTIIMWKLTRDE--------------------   72 (340)
T ss_dssp             EEEEEECCCSSC--EEEEEECTTCT---------TEEEEEET-----TSCEEEEEECCSS--------------------
T ss_pred             EEEEEECCccCC--EEEEEEeCCCC---------CEEEEEcC-----CCeEEEEECCCCC--------------------
Confidence            344456677655  99999999753         14555543     3479999885210                    


Q ss_pred             CCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCC
Q 020480          110 GCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF  189 (325)
Q Consensus       110 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~  189 (325)
                        ...........+|...|.+++|+|++ .+|++|+.|+.|++|+...          .........+...+..+.+++.
T Consensus        73 --~~~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~i~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  139 (340)
T 4aow_A           73 --TNYGIPQRALRGHSHFVSDVVISSDG-QFALSGSWDGTLRLWDLTT----------GTTTRRFVGHTKDVLSVAFSSD  139 (340)
T ss_dssp             --SCSEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT----------TEEEEEEECCSSCEEEEEECTT
T ss_pred             --cccceeeEEEeCCCCCEEEEEECCCC-CEEEEEcccccceEEeecc----------cceeeeecCCCCceeEEEEeec
Confidence              01122333456799999999999998 7999999999999999887          3335556678888999999999


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCC-cEEEEEecCCcEEEEEccCCCCCCCeeE
Q 020480          190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE-YLFGSVGDDQYLLIWDLRTPSVSKPVQS  268 (325)
Q Consensus       190 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~  268 (325)
                      +. .|++|+.|+.+++||+....     .......+|...+..++|++++. .++++++.|+.|++||+++.+.   +..
T Consensus       140 ~~-~l~s~s~d~~~~~~d~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~---~~~  210 (340)
T 4aow_A          140 NR-QIVSGSRDKTIKLWNTLGVC-----KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL---KTN  210 (340)
T ss_dssp             SS-CEEEEETTSCEEEECTTSCE-----EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE---EEE
T ss_pred             Cc-cceeecCCCeEEEEEeCCCc-----eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce---eeE
Confidence            88 89999999999999987653     23444567899999999998653 4778999999999999999874   788


Q ss_pred             eeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          269 VVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       269 ~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      +.+|..+|++++|+|++.+  +++.|+++++|+++.
T Consensus       211 ~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~  246 (340)
T 4aow_A          211 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE  246 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence            8899999999999999985  889999999998754

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.5e-22  Score=183.68  Aligned_cols=160  Identities=10%  Similarity=0.106  Sum_probs=125.7

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC-----ceEEEEecCCCCCeEEE
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST-----EGYGLSWSKFKEGHLLS  196 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~p~~~~~l~s  196 (325)
                      ..|...|.+++|+|+| .+||+++.||.|++|+...            .+..+. |..     .+.+++|+|+|. +|++
T Consensus        82 ~~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~------------~l~~l~-~~~~~~~~sv~svafSPDG~-~LAs  146 (588)
T 2j04_A           82 SQPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK------------MLTNLD-SKGNLSSRTYHCFEWNPIES-SIVV  146 (588)
T ss_dssp             TSCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE------------EEEECC-CSSCSTTTCEEEEEECSSSS-CEEE
T ss_pred             cCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc------------eeeecc-CCCccccccEEEEEEcCCCC-EEEE
Confidence            3568899999999999 7999999999999999542            244445 554     599999999999 8999


Q ss_pred             EeCCCcEEEEeCCCCCCCC-cccceEee----ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-e
Q 020480          197 GSDDAQICLWDINAAPKNK-SLEAMQIF----KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-V  270 (325)
Q Consensus       197 ~s~dg~i~iwd~~~~~~~~-~~~~~~~~----~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~  270 (325)
                      |+.||+|++||+..+.... ..-.+..+    .+|...|.+++|+|++   +++++.|++|++||+..........++ .
T Consensus       147 gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~  223 (588)
T 2j04_A          147 GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQN  223 (588)
T ss_dssp             EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEEC
T ss_pred             EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecc
Confidence            9999999999998753100 00024554    5677899999999986   788999999999999887732224556 4


Q ss_pred             ccCCCeeEEEeCCCCCc-cCCCCceEEeeecc
Q 020480          271 AHQSEVGVSILNASFRL-SHEDTCTCTHRHSR  301 (325)
Q Consensus       271 ~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~~  301 (325)
                      +|...|.+++|+ +..+ +++ ++++++|+..
T Consensus       224 ~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~  253 (588)
T 2j04_A          224 ASRRKITDLKIV-DYKVVLTC-PGYVHKIDLK  253 (588)
T ss_dssp             CCSSCCCCEEEE-TTEEEEEC-SSEEEEEETT
T ss_pred             cccCcEEEEEEE-CCEEEEEe-CCeEEEEECC
Confidence            788999999999 4444 444 7999999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.90  E-value=8.2e-22  Score=177.81  Aligned_cols=221  Identities=14%  Similarity=0.174  Sum_probs=156.1

Q ss_pred             CCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEE-E
Q 020480           42 WPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQII-Q  120 (325)
Q Consensus        42 ~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  120 (325)
                      -++.+++|+|++.          .++.|...     ..|.+|++.-......       .          ..+.++.. .
T Consensus        29 ~~V~~v~~s~~g~----------~la~g~~d-----g~v~iw~~~~~~~~~~-------~----------~~~~~~~~~~   76 (447)
T 3dw8_B           29 DIISTVEFNHSGE----------LLATGDKG-----GRVVIFQQEQENKIQS-------H----------SRGEYNVYST   76 (447)
T ss_dssp             GSEEEEEECSSSS----------EEEEEETT-----SEEEEEEECC-----C-------C----------CCCCEEEEEE
T ss_pred             CcEEEEEECCCCC----------EEEEEcCC-----CeEEEEEecCCCCCCc-------c----------cccceeEecc
Confidence            3688999999874          56666643     4899998852210000       0          11223332 3


Q ss_pred             EeccC------------CCeeEEEecCCCC-cEEEEEecCCeEEEEeCCCCCCC-----CC----------CCCCC-C--
Q 020480          121 QINHD------------GEVNRARYMPQNP-FLIATKTVSAEVYVFDYSKHPSK-----PP----------LDGAC-S--  169 (325)
Q Consensus       121 ~~~h~------------~~v~~v~~~~~~~-~~la~g~~dg~v~vwd~~~~~~~-----~~----------~~~~~-~--  169 (325)
                      ..+|.            +.|++++|+|++. ..|++|+.||.|++|++......     ..          ..... .  
T Consensus        77 ~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  156 (447)
T 3dw8_B           77 FQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPV  156 (447)
T ss_dssp             EECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCE
T ss_pred             cccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEecc
Confidence            34687            8899999999863 48999999999999998641100     00          00000 0  


Q ss_pred             -----------CcEE-EecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceE-------eeecCCccE
Q 020480          170 -----------PDLR-LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ-------IFKVHEGVV  230 (325)
Q Consensus       170 -----------~~~~-~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~v  230 (325)
                                 +... ..+|...|.+++|+|++. +|++| .|+.|++||++...     ..+.       .+.+|...|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~v  229 (447)
T 3dw8_B          157 FRPMDLMVEASPRRIFANAHTYHINSISINSDYE-TYLSA-DDLRINLWHLEITD-----RSFNIVDIKPANMEELTEVI  229 (447)
T ss_dssp             EEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSS-EEEEE-CSSEEEEEETTEEE-----EEEEEEECCCSSGGGCCCCE
T ss_pred             ccchheeeeccceEEeccCCCcceEEEEEcCCCC-EEEEe-CCCeEEEEECCCCC-----ceeeeeecccccccccCcce
Confidence                       0112 357999999999999988 89998 79999999998432     1222       356899999


Q ss_pred             EEEEeecCCCcEEEEEecCCcEEEEEccCCCC-CCCeeEeeccCC------------CeeEEEeCCCCCc--cCCCCceE
Q 020480          231 EDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-SKPVQSVVAHQS------------EVGVSILNASFRL--SHEDTCTC  295 (325)
Q Consensus       231 ~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~------------~v~~i~~~p~~~~--~~~~d~~~  295 (325)
                      .+++|+|++..+|++|+.||.|++||+++... ...+..+..|..            .|.+++|+|+|++  +++. +.+
T Consensus       230 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v  308 (447)
T 3dw8_B          230 TAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSV  308 (447)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEE
T ss_pred             EEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeE
Confidence            99999998767999999999999999998772 122567777765            8999999999985  5666 999


Q ss_pred             Eeeecce
Q 020480          296 THRHSRY  302 (325)
Q Consensus       296 ~~~~~~~  302 (325)
                      ++|+++.
T Consensus       309 ~iwd~~~  315 (447)
T 3dw8_B          309 KVWDLNM  315 (447)
T ss_dssp             EEEETTC
T ss_pred             EEEeCCC
Confidence            9999875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.89  E-value=6.6e-22  Score=193.40  Aligned_cols=198  Identities=11%  Similarity=0.118  Sum_probs=156.0

Q ss_pred             CCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEE
Q 020480           41 EWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ  120 (325)
Q Consensus        41 ~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (325)
                      .-++.+++|.|++.          .++.|+..     ..|++|+..                            ..+...
T Consensus        17 ~~~V~~lafspdg~----------~lAsgs~D-----g~I~lw~~~----------------------------~~~~~~   53 (902)
T 2oaj_A           17 SSKPIAAAFDFTQN----------LLAIATVT-----GEVHIYGQQ----------------------------QVEVVI   53 (902)
T ss_dssp             SSCEEEEEEETTTT----------EEEEEETT-----SEEEEECST----------------------------TCEEEE
T ss_pred             CCCcEEEEECCCCC----------EEEEEeCC-----CEEEEEeCC----------------------------CcEEEE
Confidence            34589999999874          56666653     378887421                            123334


Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ...|...|.+++|+| + .+|++++.|+.|++||+..          ...+..+. |...|++++|+|++. ++++|+.|
T Consensus        54 ~~~~~~~V~~l~fsp-g-~~L~S~s~D~~v~lWd~~~----------~~~~~~~~-~~~~V~~v~~sp~g~-~l~sgs~d  119 (902)
T 2oaj_A           54 KLEDRSAIKEMRFVK-G-IYLVVINAKDTVYVLSLYS----------QKVLTTVF-VPGKITSIDTDASLD-WMLIGLQN  119 (902)
T ss_dssp             ECSSCCCEEEEEEET-T-TEEEEEETTCEEEEEETTT----------CSEEEEEE-CSSCEEEEECCTTCS-EEEEEETT
T ss_pred             EcCCCCCEEEEEEcC-C-CEEEEEECcCeEEEEECCC----------CcEEEEEc-CCCCEEEEEECCCCC-EEEEEcCC
Confidence            567889999999999 7 5999999999999999987          23455564 678999999999998 89999999


Q ss_pred             CcEEEEeCCCCCCCCcccce-------EeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc-
Q 020480          201 AQICLWDINAAPKNKSLEAM-------QIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-  272 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-  272 (325)
                      |.|++||++.+... . ..+       ..+.+|...|.+++|+|++...+++|+.||.| +||+++.+.   +..+..| 
T Consensus       120 g~V~lwd~~~~~~~-~-~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~---~~~~~~~~  193 (902)
T 2oaj_A          120 GSMIVYDIDRDQLS-S-FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI---KQSFIYEL  193 (902)
T ss_dssp             SCEEEEETTTTEEE-E-EEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE---EEEECCCB
T ss_pred             CcEEEEECCCCccc-c-ceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce---EEEEeccc
Confidence            99999999876320 0 000       23467889999999999765789999999999 999998773   5555544 


Q ss_pred             -----------------CCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          273 -----------------QSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       273 -----------------~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                                       ...|++++|+|+|.+  +++.|+++++|+++
T Consensus       194 ~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~  241 (902)
T 2oaj_A          194 PPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDAN  241 (902)
T ss_dssp             CTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred             CCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence                             578999999999984  88999999999974

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.89  E-value=1.7e-21  Score=171.93  Aligned_cols=177  Identities=10%  Similarity=0.005  Sum_probs=130.6

Q ss_pred             CCCeeEEEecCCCCcEEE--EEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          125 DGEVNRARYMPQNPFLIA--TKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la--~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      ...+.+++|+|+| +++|  +++.|+.|+|||+..          ...+..+ .|...|.+++|+|++. ++++++.+ .
T Consensus       133 ~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~----------~~~~~~~-~~~~~V~~v~fspdg~-~l~s~s~~-~  198 (365)
T 4h5i_A          133 DDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSD----------LTEKFEI-ETRGEVKDLHFSTDGK-VVAYITGS-S  198 (365)
T ss_dssp             TCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTT----------TEEEEEE-ECSSCCCEEEECTTSS-EEEEECSS-C
T ss_pred             ccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCC----------CcEEEEe-CCCCceEEEEEccCCc-eEEeccce-e
Confidence            3458899999999 5655  455789999999987          3345555 4778899999999998 88888855 5


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC----cEEEEEccCCCCC-CCeeEeeccCCCee
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ----YLLIWDLRTPSVS-KPVQSVVAHQSEVG  277 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg----~i~iwd~~~~~~~-~~~~~~~~h~~~v~  277 (325)
                      +.+|+...+..    ........|...|.+++|+|++ ..+++++.|+    .+++|++...... .....+.+|..+|+
T Consensus       199 ~~~~~~~~~~~----~~~~~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~  273 (365)
T 4h5i_A          199 LEVISTVTGSC----IARKTDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGIT  273 (365)
T ss_dssp             EEEEETTTCCE----EEEECCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEE
T ss_pred             EEEEEeccCcc----eeeeecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeE
Confidence            66666665532    1223456788899999999997 6888888887    6889998876521 01345578899999


Q ss_pred             EEEeCCCCCc--cCCCCceEEeeeccee--e------eccCeeEEEeecCCCccc
Q 020480          278 VSILNASFRL--SHEDTCTCTHRHSRYL--L------YKFPFFVLVFPLFPSLQH  322 (325)
Q Consensus       278 ~i~~~p~~~~--~~~~d~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~  322 (325)
                      +++|+|+|++  +++.|+++++|+++..  .      ...++.+++|  .|+.+.
T Consensus       274 ~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f--Spdg~~  326 (365)
T 4h5i_A          274 SMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTI--SPDSTY  326 (365)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEE--CTTSCE
T ss_pred             eEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEE--CCCCCE
Confidence            9999999995  7899999999997532  1      2345566665  455544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.89  E-value=5.8e-21  Score=173.05  Aligned_cols=162  Identities=15%  Similarity=0.081  Sum_probs=135.9

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCC--CCCCCCCCCCCCCCcEEEe--cCCCceEEEEecCCCCCeEEEEe
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYS--KHPSKPPLDGACSPDLRLR--GHSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~--~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      .|.+.|.+++|+|++..++++|+.||.|++|++.  .          ...+..+.  .|...|++++|+|++. +|++|+
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~----------~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~  168 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS----------KNVLKLRKRFCFSKRPNAISIAEDDT-TVIIAD  168 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS----------SSCEEEEEEEECSSCEEEEEECTTSS-EEEEEE
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC----------CceeeeeecccCCCCceEEEEcCCCC-EEEEEe
Confidence            5777899999999995445999999999999998  4          33455554  6778999999999998 899999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecC---CCcEEEEEecCCcEEEEEccCCCCCCCeeE-eeccCC
Q 020480          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR---HEYLFGSVGDDQYLLIWDLRTPSVSKPVQS-VVAHQS  274 (325)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~  274 (325)
                      .+|.|++|++.......  .+...+.+|...|.+++|+|+   + .+|++|+.|+.|++||++++..   +.. +.+|..
T Consensus       169 ~~g~v~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~h~~  242 (450)
T 2vdu_B          169 KFGDVYSIDINSIPEEK--FTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFI---VDKWLFGHKH  242 (450)
T ss_dssp             TTSEEEEEETTSCCCSS--CCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTC---EEEECCCCSS
T ss_pred             CCCcEEEEecCCccccc--ccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCce---eeeeecCCCC
Confidence            99999999998764321  033467789999999999998   6 6999999999999999998874   655 568999


Q ss_pred             CeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          275 EVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       275 ~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      .|.+++|+ ++.+  +++.|+++++|+++.
T Consensus       243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~  271 (450)
T 2vdu_B          243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKT  271 (450)
T ss_dssp             CEEEEEEC-STTEEEEEESSSEEEEEETTT
T ss_pred             ceEEEEEC-CCCEEEEEeCCCeEEEEECCC
Confidence            99999999 8874  889999999999754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.89  E-value=9.4e-21  Score=165.96  Aligned_cols=203  Identities=12%  Similarity=0.126  Sum_probs=159.2

Q ss_pred             CCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEE
Q 020480           42 WPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQ  121 (325)
Q Consensus        42 ~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (325)
                      -++.+++|+|++.          .++.++..     ..|.+|++.                          .++ .....
T Consensus        33 ~~v~~~~~s~~~~----------~l~~~~~d-----g~i~vwd~~--------------------------~~~-~~~~~   70 (369)
T 3zwl_B           33 RPLTQVKYNKEGD----------LLFSCSKD-----SSASVWYSL--------------------------NGE-RLGTL   70 (369)
T ss_dssp             SCEEEEEECTTSC----------EEEEEESS-----SCEEEEETT--------------------------TCC-EEEEE
T ss_pred             ceEEEEEEcCCCC----------EEEEEeCC-----CEEEEEeCC--------------------------Cch-hhhhh
Confidence            3588999999764          45555532     367787642                          112 12234


Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC-
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD-  200 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-  200 (325)
                      ..|.+.|.+++|+|++ ++|++++.||.|++||+..          ...+..+. |...+.+++|+|++. .+++++.+ 
T Consensus        71 ~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~----------~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~  137 (369)
T 3zwl_B           71 DGHTGTIWSIDVDCFT-KYCVTGSADYSIKLWDVSN----------GQCVATWK-SPVPVKRVEFSPCGN-YFLAILDNV  137 (369)
T ss_dssp             CCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTT----------CCEEEEEE-CSSCEEEEEECTTSS-EEEEEECCB
T ss_pred             hhcCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC----------CcEEEEee-cCCCeEEEEEccCCC-EEEEecCCc
Confidence            4699999999999988 7999999999999999987          33455555 888999999999998 89999998 


Q ss_pred             ----CcEEEEeCCCCCCCCcc-----cceEeeecCCc--cEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe
Q 020480          201 ----AQICLWDINAAPKNKSL-----EAMQIFKVHEG--VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV  269 (325)
Q Consensus       201 ----g~i~iwd~~~~~~~~~~-----~~~~~~~~~~~--~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  269 (325)
                          |.|++||++.......+     .....+..|..  .+.+++|+|++ .++++++.||.|++||+++...  .+..+
T Consensus       138 ~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~--~~~~~  214 (369)
T 3zwl_B          138 MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYE--YVDSI  214 (369)
T ss_dssp             TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTE--EEEEE
T ss_pred             cCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcE--eEEEE
Confidence                99999999876532111     13344555666  89999999987 6899999999999999998432  57788


Q ss_pred             eccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          270 VAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       270 ~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      ..|...|.+++|+|++.+  +++.|+.+++|+++.
T Consensus       215 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  249 (369)
T 3zwl_B          215 DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST  249 (369)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ecCCCceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence            889999999999999984  788899999999754

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.89  E-value=4.6e-22  Score=177.21  Aligned_cols=238  Identities=8%  Similarity=0.035  Sum_probs=153.3

Q ss_pred             hhHHHHhhhHhcChhH-----HHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCC
Q 020480           16 LINEEYKIWKKNTPFL-----YDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLD   90 (325)
Q Consensus        16 ~~~~~~~iw~~~~~~~-----y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~   90 (325)
                      ..|.++|||+.+.+.+     ...+..|...  +.+++|.|.....  .....+.++.++.     +..+++|++.-   
T Consensus       108 ~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~--v~~v~~~p~~~~~--~~~d~~~las~s~-----D~tv~~Wd~~~---  175 (393)
T 4gq1_A          108 CQDNTVRLIITKNETIITQHVLGGKSGHHNF--VNDIDIADVYSAD--NRLAEQVIASVGD-----DCTLIIWRLTD---  175 (393)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECTTTSCSSC--EEEEEEEEEECTT--CSEEEEEEEEEET-----TSEEEEEEEET---
T ss_pred             eCCCcEEEEECCCCccceeeeecccCCCCCc--eEEEEEccccccc--cCCCCCEEEEEEC-----CCeEEEEECCC---
Confidence            3578999999887643     2345566654  8999999953211  1112345544443     45899998851   


Q ss_pred             CCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCC----
Q 020480           91 DSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDG----  166 (325)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~----  166 (325)
                                              .-.......|...|.+++|+|++.++|++|+.||.|++||+...........    
T Consensus       176 ------------------------~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~  231 (393)
T 4gq1_A          176 ------------------------EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV  231 (393)
T ss_dssp             ------------------------TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------C
T ss_pred             ------------------------CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCc
Confidence                                    1234456789999999999998867899999999999999986322111000    


Q ss_pred             -----------CCCCcEEEecCCCceEEEEec-CCCCCeEEEEeCCCcEEEEeCCCCCCCCccc-------------ceE
Q 020480          167 -----------ACSPDLRLRGHSTEGYGLSWS-KFKEGHLLSGSDDAQICLWDINAAPKNKSLE-------------AMQ  221 (325)
Q Consensus       167 -----------~~~~~~~~~~h~~~v~~l~~~-p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------------~~~  221 (325)
                                 .........+|...+.++.|+ |++. .+++++.|+++++||+..+.....+.             ...
T Consensus       232 ~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~  310 (393)
T 4gq1_A          232 KNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQ  310 (393)
T ss_dssp             SCCCSEEEESGGGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-------------------CCSCSEE
T ss_pred             ccceEEecccccceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccc
Confidence                       000112235788899999987 6777 89999999999999998764321110             011


Q ss_pred             eeecCCccEEEEEeec-CCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCce
Q 020480          222 IFKVHEGVVEDVAWHL-RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCT  294 (325)
Q Consensus       222 ~~~~~~~~v~~v~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~  294 (325)
                      ....+...+ ...|+| .+..++++|+.||.|++||+.++..   +.....|..+|++++|+|+|++  +++.++.
T Consensus       311 ~~~~~~~~~-~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~---~~~~~~~~~~V~svafspdG~~LA~as~~Gv  382 (393)
T 4gq1_A          311 GISLFPSLL-GACPHPRYMDYFATAHSQHGLIQLINTYEKDS---NSIPIQLGMPIVDFCWHQDGSHLAIATEGSV  382 (393)
T ss_dssp             EECSSCCSS-CCEECSSCTTEEEEEETTTTEEEEEETTCTTC---CEEEEECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred             cccccCcce-eEEEccCCCCEEEEEECCCCEEEEEECCCCcE---EEEecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            111112222 223333 3335677888999999999998874   6677788999999999999995  5555554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.89  E-value=2.1e-22  Score=195.10  Aligned_cols=221  Identities=15%  Similarity=0.245  Sum_probs=176.9

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+..++||+...+.....+..|.  -++.+++|+|++.          .+++|+.     +..|.+|++.          
T Consensus        33 ~~g~v~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~----------~l~~~~~-----dg~i~vw~~~----------   85 (814)
T 3mkq_A           33 YSGRVEIWNYETQVEVRSIQVTE--TPVRAGKFIARKN----------WIIVGSD-----DFRIRVFNYN----------   85 (814)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCS--SCEEEEEEEGGGT----------EEEEEET-----TSEEEEEETT----------
T ss_pred             CCCEEEEEECCCCceEEEEecCC--CcEEEEEEeCCCC----------EEEEEeC-----CCeEEEEECC----------
Confidence            35679999988877666666555  3589999999874          5666654     3478888652          


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG  176 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  176 (325)
                                      .++ .......|.+.|.+++|+|++ .+|++|+.||.|++|++..        + ......+.+
T Consensus        86 ----------------~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~--------~-~~~~~~~~~  138 (814)
T 3mkq_A           86 ----------------TGE-KVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWEN--------N-WALEQTFEG  138 (814)
T ss_dssp             ----------------TCC-EEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGG--------T-SEEEEEEEC
T ss_pred             ----------------CCc-EEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCC--------C-ceEEEEEcC
Confidence                            112 122345699999999999998 6899999999999999976        1 234567789


Q ss_pred             CCCceEEEEecC-CCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeec-CCccEEEEEeec--CCCcEEEEEecCCcE
Q 020480          177 HSTEGYGLSWSK-FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV-HEGVVEDVAWHL--RHEYLFGSVGDDQYL  252 (325)
Q Consensus       177 h~~~v~~l~~~p-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p--~~~~~l~s~~~dg~i  252 (325)
                      |...|.+++|+| ++. .+++++.||.|++||++.+..      ...+.. +...+.+++|+|  ++ .++++++.||.|
T Consensus       139 ~~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i  210 (814)
T 3mkq_A          139 HEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTP------NFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTI  210 (814)
T ss_dssp             CSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCSSC------SEEEECCCTTCCCEEEECCSTTC-CEEEEECTTSEE
T ss_pred             CCCcEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcc------eeEEecCCCCCEEEEEEEECCCC-CEEEEEeCCCEE
Confidence            999999999999 666 899999999999999987632      334443 448899999999  76 699999999999


Q ss_pred             EEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          253 LIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       253 ~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      ++||++++.   .+..+.+|...|.+++|+|++.+  +++.|+.+++|+...
T Consensus       211 ~~~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~  259 (814)
T 3mkq_A          211 KIWDYQTKS---CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (814)
T ss_dssp             EEEETTTTE---EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             EEEECCCCc---EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            999999877   47888889999999999999974  888899999998754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.89  E-value=5.2e-21  Score=168.10  Aligned_cols=218  Identities=15%  Similarity=0.095  Sum_probs=142.9

Q ss_pred             hhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcc
Q 020480           23 IWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDD  102 (325)
Q Consensus        23 iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~  102 (325)
                      ||..+.......+..|.  -++.+++|+|++.          .++.|+.      +.+.+|++. +              
T Consensus         3 i~s~~~~~~~~~~~~h~--~~V~~v~fs~dg~----------~la~g~~------~~~~iw~~~-~--------------   49 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVS--NPVTDYEFNQDQS----------CLILSTL------KSFEIYNVH-P--------------   49 (355)
T ss_dssp             ----------------C--CCCCEEEECTTSS----------EEEEECS------SEEEEEEET-T--------------
T ss_pred             cccccccCCccccccCC--CceEEEEECCCCC----------EEEEEcC------CEEEEEecC-C--------------
Confidence            34444444333444454  3588999999874          4555543      246677653 1              


Q ss_pred             cCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceE
Q 020480          103 RSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGY  182 (325)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~  182 (325)
                                   .+......+ ..+..+.+.+++..++++|+.|+.|++||...          ...+..+. |...|.
T Consensus        50 -------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~----------~~~~~~~~-~~~~v~  104 (355)
T 3vu4_A           50 -------------VAHIMSQEM-RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK----------KQDVSRIK-VDAPVK  104 (355)
T ss_dssp             -------------EEEEEEEEC-SCCCEEEECTTSSEEEEECSSTTEEEEEETTT----------TEEEEEEE-CSSCEE
T ss_pred             -------------cceeeeeec-CCeEEEEEcCCCCEEEEEECCccEEEEEECCC----------CcEEEEEE-CCCceE
Confidence                         122222222 25788888887744456788889999999876          23344444 555777


Q ss_pred             EEEecCCCC----------------------------------CeEEE--EeCCCcEEEEeCCCCCCC---------Ccc
Q 020480          183 GLSWSKFKE----------------------------------GHLLS--GSDDAQICLWDINAAPKN---------KSL  217 (325)
Q Consensus       183 ~l~~~p~~~----------------------------------~~l~s--~s~dg~i~iwd~~~~~~~---------~~~  217 (325)
                      +++|+++..                                  ..++.  |+.||.|++||++.+...         ..+
T Consensus       105 ~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~  184 (355)
T 3vu4_A          105 DLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAI  184 (355)
T ss_dssp             EEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC----------------
T ss_pred             EEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCcccccccccccccc
Confidence            777766420                                  12333  567888888888764310         011


Q ss_pred             cc-eEeeecCCccEEEEEeecCCCcEEEEEecCCc-EEEEEccCCCCCCCeeEee-c-cCCCeeEEEeCCCCCc--cCCC
Q 020480          218 EA-MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY-LLIWDLRTPSVSKPVQSVV-A-HQSEVGVSILNASFRL--SHED  291 (325)
Q Consensus       218 ~~-~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~-~-h~~~v~~i~~~p~~~~--~~~~  291 (325)
                      .+ +..+.+|...|.+++|+|++ .+||+|+.||+ |++||+++++.   +..+. + |...|++++|+|+|.+  +++.
T Consensus       185 ~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~---~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~  260 (355)
T 3vu4_A          185 LGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVL---VREFRRGLDRADVVDMKWSTDGSKLAVVSD  260 (355)
T ss_dssp             --CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCE---EEEEECTTCCSCEEEEEECTTSCEEEEEET
T ss_pred             CcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcE---EEEEEcCCCCCcEEEEEECCCCCEEEEEEC
Confidence            12 67788999999999999987 79999999998 99999999884   77776 5 9999999999999985  8899


Q ss_pred             CceEEeeecce
Q 020480          292 TCTCTHRHSRY  302 (325)
Q Consensus       292 d~~~~~~~~~~  302 (325)
                      |+++++|+++.
T Consensus       261 d~~v~iw~~~~  271 (355)
T 3vu4_A          261 KWTLHVFEIFN  271 (355)
T ss_dssp             TCEEEEEESSC
T ss_pred             CCEEEEEEccC
Confidence            99999999854

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.1e-22  Score=183.27  Aligned_cols=232  Identities=14%  Similarity=0.164  Sum_probs=166.1

Q ss_pred             hHHHHhhhHhcC---hhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480           17 INEEYKIWKKNT---PFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE   93 (325)
Q Consensus        17 ~~~~~~iw~~~~---~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~   93 (325)
                      .+.++++|+...   ...+.........-++.+++|.|+..          .++.++..     ..|.+|++........
T Consensus        84 ~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----------~l~s~s~d-----g~i~vwd~~~~~~~~~  148 (437)
T 3gre_A           84 DQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFD----------AFAVSSKD-----GQIIVLKVNHYQQESE  148 (437)
T ss_dssp             TTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSS----------EEEEEETT-----SEEEEEEEEEEEETTE
T ss_pred             CCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCC----------EEEEEeCC-----CEEEEEEeccccCCce
Confidence            567899999876   33232222222345699999999764          46566542     4799998841100000


Q ss_pred             cccCCCCcccCCCCCCCCCCCceEEEEEe---c--cCCCeeEEE--ecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCC
Q 020480           94 NDARHYDDDRSDFGGFGCANGKVQIIQQI---N--HDGEVNRAR--YMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDG  166 (325)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--h~~~v~~v~--~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~  166 (325)
                      .                 .......+..+   .  +...+.++.  +++++ .+|++|+.||.|++||++.         
T Consensus       149 ~-----------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~---------  201 (437)
T 3gre_A          149 V-----------------KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRT---------  201 (437)
T ss_dssp             E-----------------EEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTT---------
T ss_pred             e-----------------eccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC---------
Confidence            0                 00011122222   2  667788888  55666 7999999999999999987         


Q ss_pred             CCCCcEEEec--CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeee-cCCccEEEEEeecC---CC
Q 020480          167 ACSPDLRLRG--HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLR---HE  240 (325)
Q Consensus       167 ~~~~~~~~~~--h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~---~~  240 (325)
                       ...+..+.+  |...|++++|+|++. +|++|+.||.|++||++.+      .++..+. .|...|.+++|+|.   +.
T Consensus       202 -~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~s~~~  273 (437)
T 3gre_A          202 -LERLQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFN------VLIRSWSFGDHAPITHVEVCQFYGKNS  273 (437)
T ss_dssp             -CCEEEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTT------EEEEEEBCTTCEEEEEEEECTTTCTTE
T ss_pred             -CeeeEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCc------cEEEEEecCCCCceEEEEeccccCCCc
Confidence             455777777  889999999999988 8999999999999999976      4566665 77889999977653   23


Q ss_pred             cEEEEEecCCcEEEEEccCCCCCCCeeEeec--------------------------cCCCeeEEEeCCCCC--ccCCCC
Q 020480          241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA--------------------------HQSEVGVSILNASFR--LSHEDT  292 (325)
Q Consensus       241 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------------------------h~~~v~~i~~~p~~~--~~~~~d  292 (325)
                      .+|++|+.||.|++||+++++.   +..+.+                          |...|++++|+ ++.  ++++.|
T Consensus       274 ~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d  349 (437)
T 3gre_A          274 VIVVGGSSKTFLTIWNFVKGHC---QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEAT  349 (437)
T ss_dssp             EEEEEESTTEEEEEEETTTTEE---EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGG
T ss_pred             cEEEEEcCCCcEEEEEcCCCcE---EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCC
Confidence            6999999999999999998763   444332                          56678889999 454  388899


Q ss_pred             ceEEeeecce
Q 020480          293 CTCTHRHSRY  302 (325)
Q Consensus       293 ~~~~~~~~~~  302 (325)
                      +.+++|++..
T Consensus       350 ~~i~~wd~~~  359 (437)
T 3gre_A          350 SSIVMFSLNE  359 (437)
T ss_dssp             TEEEEEETTC
T ss_pred             CeEEEEECCC
Confidence            9999999754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.7e-22  Score=180.75  Aligned_cols=222  Identities=11%  Similarity=0.094  Sum_probs=159.9

Q ss_pred             hhHhcChhHHHHhhhcCCCCCceEEEEee-CCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCc
Q 020480           23 IWKKNTPFLYDLVITHALEWPSLTVEWLP-DREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDD  101 (325)
Q Consensus        23 iw~~~~~~~y~~~~~~~~~~p~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~  101 (325)
                      .|+.+...+......|..  ++.+++|+| ++.          .++.|+.     +..|.+|++.-..            
T Consensus        47 ~w~~~g~~~~~~~~~h~~--~V~~~~~s~~~~~----------~l~s~s~-----dg~v~vwd~~~~~------------   97 (437)
T 3gre_A           47 MGNLRGKLIATLMENEPN--SITSSAVSPGETP----------YLITGSD-----QGVIKIWNLKEII------------   97 (437)
T ss_dssp             GGGCCCCEEEEECTTTTS--CEEEEEEECSSSC----------EEEEEET-----TSEEEEEEHHHHH------------
T ss_pred             cccccceEEeeeccCCCC--ceEEEEECCCCCC----------EEEEecC-----CceEEEeECcccc------------
Confidence            477655433333255544  489999999 663          5666653     3489999874110            


Q ss_pred             ccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-----
Q 020480          102 DRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-----  176 (325)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-----  176 (325)
                       .         .........+.|.+.|++++|+|++ .+|++|+.||.|++||+....       .......+.+     
T Consensus        98 -~---------~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~-------~~~~~~~~~~~~i~~  159 (437)
T 3gre_A           98 -V---------GEVYSSSLTYDCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQ-------QESEVKFLNCECIRK  159 (437)
T ss_dssp             -T---------TCCCSCSEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEE-------ETTEEEEEEEEEEEE
T ss_pred             -c---------CcccceeeeccCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEecccc-------CCceeeccccceeEE
Confidence             0         0001111234699999999999987 799999999999999985200       0111222221     


Q ss_pred             -------CCCceEEEE--ecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeec--CCccEEEEEeecCCCcEEEE
Q 020480          177 -------HSTEGYGLS--WSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV--HEGVVEDVAWHLRHEYLFGS  245 (325)
Q Consensus       177 -------h~~~v~~l~--~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~s  245 (325)
                             +...+.++.  +++++. ++++|+.||.|++||++.+      .++..+..  |...|.+++|+|++ .+|++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s  231 (437)
T 3gre_A          160 INLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRTL------ERLQIIENSPRHGAVSSICIDEEC-CVLIL  231 (437)
T ss_dssp             EEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTTC------CEEEEEECCGGGCCEEEEEECTTS-CEEEE
T ss_pred             EEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC------eeeEEEccCCCCCceEEEEECCCC-CEEEE
Confidence                   445566666  556777 8999999999999999886      45777777  88999999999986 79999


Q ss_pred             EecCCcEEEEEccCCCCCCCeeEee-ccCCCeeEEEeCC----CCCc--cCCCCceEEeeecce
Q 020480          246 VGDDQYLLIWDLRTPSVSKPVQSVV-AHQSEVGVSILNA----SFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       246 ~~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~i~~~p----~~~~--~~~~d~~~~~~~~~~  302 (325)
                      |+.||.|++||++++.   ++..+. .|..+|.+++|+|    ++.+  +++.|+++++|+++.
T Consensus       232 ~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~  292 (437)
T 3gre_A          232 GTTRGIIDIWDIRFNV---LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK  292 (437)
T ss_dssp             EETTSCEEEEETTTTE---EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred             EcCCCeEEEEEcCCcc---EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence            9999999999999876   367664 7888999997765    4543  889999999999863

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.88  E-value=9.2e-21  Score=171.73  Aligned_cols=199  Identities=13%  Similarity=0.135  Sum_probs=155.9

Q ss_pred             CceEEEEeeCCCCCCCCCcceEEE-EEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEE
Q 020480           43 PSLTVEWLPDREEPPGKDYSVQKM-ILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQ  121 (325)
Q Consensus        43 p~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (325)
                      ++.+++|+|++.          .+ +.|..     +..+.+|++..+.                       ...+..+..
T Consensus       104 ~v~~~~~s~d~~----------~l~~~~~~-----dg~v~iwd~~~~~-----------------------~~~~~~~~~  145 (450)
T 2vdu_B          104 YIRNLRLTSDES----------RLIACADS-----DKSLLVFDVDKTS-----------------------KNVLKLRKR  145 (450)
T ss_dssp             CEEEEEECTTSS----------EEEEEEGG-----GTEEEEEEECSSS-----------------------SSCEEEEEE
T ss_pred             ceEEEEEcCCCC----------EEEEEECC-----CCeEEEEECcCCC-----------------------Cceeeeeec
Confidence            488999999875          33 44443     2479999874210                       112344444


Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCC--CcEEEecCCCceEEEEecCC---CCCeEEE
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACS--PDLRLRGHSTEGYGLSWSKF---KEGHLLS  196 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~l~~~p~---~~~~l~s  196 (325)
                      ..|...|++++|+|++ .+|++|+.+|.|++|++...        ...  ....+.+|...|++++|+|+   +. +|++
T Consensus       146 ~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~~~~~~--------~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s  215 (450)
T 2vdu_B          146 FCFSKRPNAISIAEDD-TTVIIADKFGDVYSIDINSI--------PEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIIT  215 (450)
T ss_dssp             EECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTSC--------CCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEE
T ss_pred             ccCCCCceEEEEcCCC-CEEEEEeCCCcEEEEecCCc--------ccccccceeeecccCceEEEEEcCCCCCCc-EEEE
Confidence            5788999999999998 79999999999999998762        111  33467789999999999999   77 8999


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceEe-eecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeec----
Q 020480          197 GSDDAQICLWDINAAPKNKSLEAMQI-FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA----  271 (325)
Q Consensus       197 ~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----  271 (325)
                      |+.|+.|++||++.+.      .+.. +.+|...|.+++|+ ++ .+|++|+.|+.|++||+++++.   +..+..    
T Consensus       216 ~~~d~~i~vwd~~~~~------~~~~~~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~---~~~~~~~~~~  284 (450)
T 2vdu_B          216 SDRDEHIKISHYPQCF------IVDKWLFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKN---LSTFDYNSLI  284 (450)
T ss_dssp             EETTSCEEEEEESCTT------CEEEECCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCE---EEEEECHHHH
T ss_pred             EcCCCcEEEEECCCCc------eeeeeecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcE---eeeecchhhh
Confidence            9999999999998763      3444 56899999999999 76 7999999999999999999874   555542    


Q ss_pred             ---------------------cCCCeeEEEeCCCCCc--cCC-CCceEEeeec
Q 020480          272 ---------------------HQSEVGVSILNASFRL--SHE-DTCTCTHRHS  300 (325)
Q Consensus       272 ---------------------h~~~v~~i~~~p~~~~--~~~-~d~~~~~~~~  300 (325)
                                           ....|.+++|+|++.+  +++ .++.+++|++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          285 KPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             GGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             hhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence                                 2357899999999985  444 7999999998

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.88  E-value=7.9e-21  Score=184.08  Aligned_cols=198  Identities=16%  Similarity=0.181  Sum_probs=161.3

Q ss_pred             CceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEe
Q 020480           43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQI  122 (325)
Q Consensus        43 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (325)
                      ++.+++|+|++.          .+++|..     ++.|.+|++.                          .+. ......
T Consensus        15 ~v~~i~~sp~~~----------~la~~~~-----~g~v~iwd~~--------------------------~~~-~~~~~~   52 (814)
T 3mkq_A           15 RVKGIDFHPTEP----------WVLTTLY-----SGRVEIWNYE--------------------------TQV-EVRSIQ   52 (814)
T ss_dssp             CEEEEEECSSSS----------EEEEEET-----TSEEEEEETT--------------------------TTE-EEEEEE
T ss_pred             ceEEEEECCCCC----------EEEEEeC-----CCEEEEEECC--------------------------CCc-eEEEEe
Confidence            488999999874          5666653     3478888652                          111 222344


Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      .|.+.|.+++|+|++ .+|++|+.||.|++|++.+          ...+..+.+|...|++++|+|+++ +|++++.||.
T Consensus        53 ~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~----------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~  120 (814)
T 3mkq_A           53 VTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNT----------GEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLT  120 (814)
T ss_dssp             CCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTT----------CCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSE
T ss_pred             cCCCcEEEEEEeCCC-CEEEEEeCCCeEEEEECCC----------CcEEEEEecCCCCEEEEEEeCCCC-EEEEEcCCCE
Confidence            699999999999998 7999999999999999987          355778889999999999999998 8999999999


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeec-cCCCeeEEEe
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-HQSEVGVSIL  281 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~i~~  281 (325)
                      |++||++.+.     .....+.+|...|.+++|+|.+...+++++.||.|++||++....   ...+.. +...+.+++|
T Consensus       121 i~vw~~~~~~-----~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~---~~~~~~~~~~~v~~~~~  192 (814)
T 3mkq_A          121 VKLWNWENNW-----ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQERGVNYVDY  192 (814)
T ss_dssp             EEEEEGGGTS-----EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC---SEEEECCCTTCCCEEEE
T ss_pred             EEEEECCCCc-----eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc---eeEEecCCCCCEEEEEE
Confidence            9999998752     346677889999999999994347999999999999999988774   555544 4489999999


Q ss_pred             CC--CCCc--cCCCCceEEeeecce
Q 020480          282 NA--SFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       282 ~p--~~~~--~~~~d~~~~~~~~~~  302 (325)
                      +|  ++.+  +++.|+.+++|+.+.
T Consensus       193 ~~~~~~~~l~~~~~dg~i~~~d~~~  217 (814)
T 3mkq_A          193 YPLPDKPYMITASDDLTIKIWDYQT  217 (814)
T ss_dssp             CCSTTCCEEEEECTTSEEEEEETTT
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCC
Confidence            99  7764  888999999998643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.88  E-value=6.5e-21  Score=165.72  Aligned_cols=196  Identities=9%  Similarity=0.017  Sum_probs=155.6

Q ss_pred             CceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEe
Q 020480           43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQI  122 (325)
Q Consensus        43 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (325)
                      ++.+++|+|++.          .+++++.     ++.+.+|++.-.                        .+........
T Consensus        13 ~v~~~~~s~~~~----------~l~~~~~-----d~~v~iw~~~~~------------------------~~~~~~~~~~   53 (342)
T 1yfq_A           13 YISDIKIIPSKS----------LLLITSW-----DGSLTVYKFDIQ------------------------AKNVDLLQSL   53 (342)
T ss_dssp             CEEEEEEEGGGT----------EEEEEET-----TSEEEEEEEETT------------------------TTEEEEEEEE
T ss_pred             cEEEEEEcCCCC----------EEEEEcC-----CCeEEEEEeCCC------------------------Cccccceeee
Confidence            588999999764          4556553     358999988621                        1223344556


Q ss_pred             ccCCCeeEEEecCCCCc-EEEEEecCCeEEEEeC-CCCCCCCCCCCCCCCcEEEec--CCCceEEEEecCCCCCeEEEEe
Q 020480          123 NHDGEVNRARYMPQNPF-LIATKTVSAEVYVFDY-SKHPSKPPLDGACSPDLRLRG--HSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~-~la~g~~dg~v~vwd~-~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      .|...|++++|+|++ . +|++|+.||.|++|++ ..           .....+.+  |...|.+++|+| +. ++++++
T Consensus        54 ~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~-----------~~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~  119 (342)
T 1yfq_A           54 RYKHPLLCCNFIDNT-DLQIYVGTVQGEILKVDLIGS-----------PSFQALTNNEANLGICRICKYG-DD-KLIAAS  119 (342)
T ss_dssp             ECSSCEEEEEEEESS-SEEEEEEETTSCEEEECSSSS-----------SSEEECBSCCCCSCEEEEEEET-TT-EEEEEE
T ss_pred             ecCCceEEEEECCCC-CcEEEEEcCCCeEEEEEeccC-----------CceEeccccCCCCceEEEEeCC-CC-EEEEEc
Confidence            899999999999987 7 8999999999999999 76           22466778  999999999999 66 899999


Q ss_pred             CCCcEEEEeCCC---------CCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC-CCCCCCeeE
Q 020480          199 DDAQICLWDINA---------APKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT-PSVSKPVQS  268 (325)
Q Consensus       199 ~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~  268 (325)
                      .|+.|++||++.         ..      ++..+. |...|.+++|+|++   +++++.|+.|++||++. ... .....
T Consensus       120 ~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~-~~~~~  188 (342)
T 1yfq_A          120 WDGLIEVIDPRNYGDGVIAVKNL------NSNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDD-NGTIE  188 (342)
T ss_dssp             TTSEEEEECHHHHTTBCEEEEES------CSSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTC-CCEEE
T ss_pred             CCCeEEEEcccccccccccccCC------eeeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccc-cceee
Confidence            999999999986         42      333444 88899999999864   88999999999999998 553 12334


Q ss_pred             eeccCCCeeEEEeCC-CCCc--cCCCCceEEeeecce
Q 020480          269 VVAHQSEVGVSILNA-SFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       269 ~~~h~~~v~~i~~~p-~~~~--~~~~d~~~~~~~~~~  302 (325)
                      ...|...|.+++|+| ++.+  +++.|+.+++|++..
T Consensus       189 ~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~  225 (342)
T 1yfq_A          189 ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD  225 (342)
T ss_dssp             ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred             ecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence            456888999999999 8874  788999999987644

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.88  E-value=1.2e-21  Score=176.64  Aligned_cols=159  Identities=21%  Similarity=0.261  Sum_probs=132.0

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ...+|...|.+++|  ++ +++++|+.||.|++||+..          ...+..+.+|...|.++.|+  +. ++++|+.
T Consensus       251 ~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~--~~-~l~~g~~  314 (435)
T 1p22_A          251 VLVGHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTST----------CEFVRTLNGHKRGIACLQYR--DR-LVVSGSS  314 (435)
T ss_dssp             EECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTT----------CCEEEEEECCSSCEEEEEEE--TT-EEEEEET
T ss_pred             EecCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCc----------CcEEEEEcCCCCcEEEEEeC--CC-EEEEEeC
Confidence            35579999999999  34 6899999999999999987          45577889999999999995  44 8999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC------CCeeEeeccC
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS------KPVQSVVAHQ  273 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~h~  273 (325)
                      ||.|++||++++      .++..+.+|...|.+++|  ++ .++++|+.||.|++||++.....      ..+..+.+|.
T Consensus       315 dg~i~iwd~~~~------~~~~~~~~h~~~v~~~~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~  385 (435)
T 1p22_A          315 DNTIRLWDIECG------ACLRVLEGHEELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS  385 (435)
T ss_dssp             TSCEEEEETTTC------CEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS
T ss_pred             CCeEEEEECCCC------CEEEEEeCCcCcEEEEEe--cC-CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC
Confidence            999999999987      567888999999999999  33 68999999999999999865411      1367778999


Q ss_pred             CCeeEEEeCCCCCccCCCCceEEeeeccee
Q 020480          274 SEVGVSILNASFRLSHEDTCTCTHRHSRYL  303 (325)
Q Consensus       274 ~~v~~i~~~p~~~~~~~~d~~~~~~~~~~~  303 (325)
                      +.|.+++|++...++++.|+++++|++...
T Consensus       386 ~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          386 GRVFRLQFDEFQIVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             SCCCCEEECSSCEEECCSSSEEEEEC----
T ss_pred             CCeEEEEeCCCEEEEEeCCCEEEEEECCCC
Confidence            999999996554459999999999997653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.88  E-value=3.4e-21  Score=174.78  Aligned_cols=152  Identities=11%  Similarity=0.109  Sum_probs=122.0

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCC-C----CcEEE----ecCCCceEEEEecCCCCCeEEEE
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGAC-S----PDLRL----RGHSTEGYGLSWSKFKEGHLLSG  197 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~-~----~~~~~----~~h~~~v~~l~~~p~~~~~l~s~  197 (325)
                      .|.+++|+|+| ++||+|+.||+|++|++..        +.. .    .+.++    .+|...|.+++|+|++   ++++
T Consensus       131 sv~svafSPDG-~~LAsgs~DGtVkIWd~~~--------~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laas  198 (588)
T 2j04_A          131 TYHCFEWNPIE-SSIVVGNEDGELQFFSIRK--------NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAA  198 (588)
T ss_dssp             CEEEEEECSSS-SCEEEEETTSEEEEEECCC--------CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEE
T ss_pred             cEEEEEEcCCC-CEEEEEcCCCEEEEEECCC--------CccccccceeeeeeecccccccccEEEEEEcCCc---EEEE
Confidence            59999999999 7999999999999999987        211 1    24565    5788899999999987   8889


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceEee-ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCe
Q 020480          198 SDDAQICLWDINAAPKNKSLEAMQIF-KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (325)
Q Consensus       198 s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  276 (325)
                      +.|++|++||+......   ...+.+ .+|...|.+++|+  + ..+|+++ ++.|++||+..+..   .....+|.+.|
T Consensus       199 s~D~tVrlWd~~~~~~~---~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~---~~~~~gh~~~V  268 (588)
T 2j04_A          199 LSNNSVFSMTVSASSHQ---PVSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSI---SSLKTGSLENF  268 (588)
T ss_dssp             ETTCCEEEECCCSSSSC---CCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEE---EEEECSCCSCC
T ss_pred             eCCCeEEEEECCCCccc---cceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeE---EEEEcCCCceE
Confidence            99999999999876421   123445 4788899999999  4 6888887 69999999998762   23333899999


Q ss_pred             eEEEe--CCCCCc--cCCCCceEEeeecc
Q 020480          277 GVSIL--NASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       277 ~~i~~--~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      .+++|  +|++..  +++.+++ ++|...
T Consensus       269 ~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          269 HIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             EEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            99999  999963  7777888 888764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.88  E-value=3e-21  Score=180.91  Aligned_cols=224  Identities=10%  Similarity=0.043  Sum_probs=175.5

Q ss_pred             HHHHhhhHhcCh----hHHHHhhhcCCCCC-ceEEEEee--CCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCC
Q 020480           18 NEEYKIWKKNTP----FLYDLVITHALEWP-SLTVEWLP--DREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLD   90 (325)
Q Consensus        18 ~~~~~iw~~~~~----~~y~~~~~~~~~~p-~~s~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~   90 (325)
                      +..+++|+...+    .....+..|.  -+ +.+++|+|  ++.          .++.|..     +..+.+|++.-.. 
T Consensus        38 ~~~v~v~~~~~~~~~~~~~~~~~~h~--~~~v~~~~~sp~~~~~----------~l~s~~~-----dg~v~vw~~~~~~-   99 (615)
T 1pgu_A           38 GKSAFVRCLDDGDSKVPPVVQFTGHG--SSVVTTVKFSPIKGSQ----------YLCSGDE-----SGKVIVWGWTFDK-   99 (615)
T ss_dssp             TTEEEEEECCSSCCSSCSEEEECTTT--TSCEEEEEECSSTTCC----------EEEEEET-----TSEEEEEEEEEEG-
T ss_pred             CCeEEEEECCCCCCccccceEEecCC--CceEEEEEECcCCCCC----------EEEEecC-----CCEEEEEeCCCCc-
Confidence            457889998876    5555555554  45 88999999  763          5656554     3489999884110 


Q ss_pred             CCCcccCCCCcccCCCCCCCCCCCceEEE-EEeccCCCeeEEEecCCCCcEEEEEecC----CeEEEEeCCCCCCCCCCC
Q 020480           91 DSENDARHYDDDRSDFGGFGCANGKVQII-QQINHDGEVNRARYMPQNPFLIATKTVS----AEVYVFDYSKHPSKPPLD  165 (325)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~~la~g~~d----g~v~vwd~~~~~~~~~~~  165 (325)
                             .  .          ........ ....|...|.+++|+|++ .+|++++.+    +.|++|+..         
T Consensus       100 -------~--~----------~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~v~~~d~~---------  150 (615)
T 1pgu_A          100 -------E--S----------NSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDSG---------  150 (615)
T ss_dssp             -------G--G----------TEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTTC---------
T ss_pred             -------c--c----------ccccccccchhhcccccEEEEEEeCCC-CEEEEeccCCCCccEEEEEECC---------
Confidence                   0  0          00012222 334589999999999998 688888877    789999832         


Q ss_pred             CCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCc---cEEEEEeecC-CCc
Q 020480          166 GACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG---VVEDVAWHLR-HEY  241 (325)
Q Consensus       166 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~v~~v~~~p~-~~~  241 (325)
                         ..+..+.+|...|.+++|+|++..++++++.|+.|++||+...      ..+..+.+|..   .|.+++|+|+ + .
T Consensus       151 ---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~-~  220 (615)
T 1pgu_A          151 ---NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF------KFSASDRTHHKQGSFVRDVEFSPDSG-E  220 (615)
T ss_dssp             ---CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB------EEEEEECSSSCTTCCEEEEEECSTTC-C
T ss_pred             ---CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc------ceeeeecccCCCCceEEEEEECCCCC-C
Confidence               3467788999999999999999868999999999999998876      56777888998   9999999998 6 6


Q ss_pred             EEEEEecCCcEEEEEccCCCCCCCeeEe-e---ccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          242 LFGSVGDDQYLLIWDLRTPSVSKPVQSV-V---AHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       242 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~---~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      ++++++.||.|++||+++++.   +..+ .   .|...|.+++|+ ++.+  +++.|+.+++|+++.
T Consensus       221 ~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~  283 (615)
T 1pgu_A          221 FVITVGSDRKISCFDGKSGEF---LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT  283 (615)
T ss_dssp             EEEEEETTCCEEEEETTTCCE---EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT
T ss_pred             EEEEEeCCCeEEEEECCCCCE---eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC
Confidence            999999999999999998873   7777 5   899999999999 7774  788899999999763

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.87  E-value=4.1e-21  Score=194.30  Aligned_cols=162  Identities=18%  Similarity=0.247  Sum_probs=146.1

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ...+|.+.|++++|+|++ .++|+|+.||.|++||+.+          ...+..+.+|...|.+++|+|++. ++++|+.
T Consensus       610 ~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~vw~~~~----------~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~  677 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDG-QRIASCGADKTLQVFKAET----------GEKLLDIKAHEDEVLCCAFSSDDS-YIATCSA  677 (1249)
T ss_dssp             EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT----------CCEEEEECCCSSCEEEEEECTTSS-EEEEEET
T ss_pred             EEecccccEEEEEECCCC-CEEEEEeCCCeEEEEECCC----------CCEEEEeccCCCCEEEEEEecCCC-EEEEEeC
Confidence            456799999999999998 7999999999999999987          355778899999999999999998 8999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCC-CcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeE
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGV  278 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  278 (325)
                      ||.|++||+.++      .++..+.+|...|.+++|+|++ ..++++|+.||.|++||++++..   +..+.+|...|++
T Consensus       678 d~~v~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~---~~~~~~h~~~v~~  748 (1249)
T 3sfz_A          678 DKKVKIWDSATG------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC---RNTMFGHTNSVNH  748 (1249)
T ss_dssp             TSEEEEEETTTC------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE---EEEECCCSSCEEE
T ss_pred             CCeEEEEECCCC------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch---hheecCCCCCEEE
Confidence            999999999987      5678889999999999999952 36899999999999999999884   7888899999999


Q ss_pred             EEeCCCCCc--cCCCCceEEeeecce
Q 020480          279 SILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       279 i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      ++|+|++.+  +++.|+++++|+++.
T Consensus       749 ~~~sp~~~~l~s~s~dg~v~vwd~~~  774 (1249)
T 3sfz_A          749 CRFSPDDELLASCSADGTLRLWDVRS  774 (1249)
T ss_dssp             EEECSSTTEEEEEESSSEEEEEEGGG
T ss_pred             EEEecCCCEEEEEECCCeEEEEeCCC
Confidence            999999984  889999999999754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.87  E-value=4e-21  Score=168.27  Aligned_cols=124  Identities=15%  Similarity=0.267  Sum_probs=105.6

Q ss_pred             EeccCCCeeEEEecCCC--CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480          121 QINHDGEVNRARYMPQN--PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~--~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      ..+|.+.|++++|+|++  +.+|++|+.||.|++|++..        ........+.+|...|++++|+|++. +|++++
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~  105 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQD--------SGQTIPKAQQMHTGPVLDVCWSDDGS-KVFTAS  105 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECT--------TSCEEEEEEEECSSCEEEEEECTTSS-EEEEEE
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCC--------CCceeEEEeccccCCEEEEEECcCCC-EEEEEc
Confidence            34799999999999984  47999999999999999975        12233367889999999999999988 899999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEe--ecCCCcEEEEEecCCcEEEEEccCCC
Q 020480          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAW--HLRHEYLFGSVGDDQYLLIWDLRTPS  261 (325)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~--~p~~~~~l~s~~~dg~i~iwd~~~~~  261 (325)
                      .||.|++||++.+.       ......|...|.+++|  +|++ .+|++++.||.|++||+++.+
T Consensus       106 ~dg~v~iwd~~~~~-------~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~  162 (368)
T 3mmy_A          106 CDKTAKMWDLSSNQ-------AIQIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSN  162 (368)
T ss_dssp             TTSEEEEEETTTTE-------EEEEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSS
T ss_pred             CCCcEEEEEcCCCC-------ceeeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCc
Confidence            99999999998762       2335679999999999  7775 689999999999999998765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.87  E-value=3.9e-21  Score=174.54  Aligned_cols=241  Identities=14%  Similarity=0.159  Sum_probs=173.3

Q ss_pred             hhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcc
Q 020480           16 LINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEND   95 (325)
Q Consensus        16 ~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~   95 (325)
                      ..+.++++|+.+++.....+..|..  ++.+++|.|....        ..++.|+..     ..+.+|++.-........
T Consensus       180 s~dg~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~--------~~l~s~s~d-----~~i~vwd~~~~~~~~~~~  244 (464)
T 3v7d_B          180 STDRTVRVWDIKKGCCTHVFEGHNS--TVRCLDIVEYKNI--------KYIVTGSRD-----NTLHVWKLPKESSVPDHG  244 (464)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSS--CEEEEEEEESSSC--------EEEEEEETT-----SCEEEEECCCCCCC----
T ss_pred             eCCCCEEEEECCCCcEEEEECCCCC--ccEEEEEecCCCC--------CEEEEEcCC-----CcEEEeeCCCCccccccc
Confidence            4577899999988776666655554  4778888875432        356666543     378888774221110000


Q ss_pred             cCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe
Q 020480           96 ARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR  175 (325)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  175 (325)
                      ...  .  ...................+|...|.++.  +++ .++++|+.||.|++||+..          ...+..+.
T Consensus       245 ~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~~~~~d~~i~vwd~~~----------~~~~~~~~  307 (464)
T 3v7d_B          245 EEH--D--YPLVFHTPEENPYFVGVLRGHMASVRTVS--GHG-NIVVSGSYDNTLIVWDVAQ----------MKCLYILS  307 (464)
T ss_dssp             --C--C--SSEEESCGGGCTTEEEEECCCSSCEEEEE--EET-TEEEEEETTSCEEEEETTT----------TEEEEEEC
T ss_pred             ccC--C--cceEeeccCCCeEEEEEccCccceEEEEc--CCC-CEEEEEeCCCeEEEEECCC----------CcEEEEec
Confidence            000  0  00000000111222334567889998874  445 6999999999999999987          45577888


Q ss_pred             cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEE
Q 020480          176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW  255 (325)
Q Consensus       176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iw  255 (325)
                      +|...|.+++|+|++. .+++|+.||.|++||++++      .++..+.+|...|.+++|++   .++++|+.||.|++|
T Consensus       308 ~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vw  377 (464)
T 3v7d_B          308 GHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENG------ELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGW  377 (464)
T ss_dssp             CCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEE
T ss_pred             CCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC------cEEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEE
Confidence            9999999999999998 8999999999999999887      56888899999999999973   589999999999999


Q ss_pred             EccCCCCCCCeeEeeccCCCeeEEEeCCCCCc-cCCCCceEEeeecce
Q 020480          256 DLRTPSVSKPVQSVVAHQSEVGVSILNASFRL-SHEDTCTCTHRHSRY  302 (325)
Q Consensus       256 d~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~~~  302 (325)
                      |+++...   .... .|...+..++|+|++.+ .++.|+.+++|++..
T Consensus       378 d~~~~~~---~~~~-~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~  421 (464)
T 3v7d_B          378 DANDYSR---KFSY-HHTNLSAITTFYVSDNILVSGSENQFNIYNLRS  421 (464)
T ss_dssp             ETTTCCE---EEEE-ECTTCCCEEEEEECSSEEEEEETTEEEEEETTT
T ss_pred             ECCCCce---eeee-cCCCCccEEEEEeCCCEEEEecCCeEEEEECCC
Confidence            9998763   3333 46778888999999885 333489999998754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.87  E-value=2.8e-21  Score=195.49  Aligned_cols=226  Identities=16%  Similarity=0.178  Sum_probs=178.3

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.++++|+..+......+..|..  ++.+++|+|++.          .++.++.     ++.+.+|++.          
T Consensus       635 ~d~~i~vw~~~~~~~~~~~~~h~~--~v~~~~~s~~~~----------~l~s~~~-----d~~v~vwd~~----------  687 (1249)
T 3sfz_A          635 ADKTLQVFKAETGEKLLDIKAHED--EVLCCAFSSDDS----------YIATCSA-----DKKVKIWDSA----------  687 (1249)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSS----------EEEEEET-----TSEEEEEETT----------
T ss_pred             CCCeEEEEECCCCCEEEEeccCCC--CEEEEEEecCCC----------EEEEEeC-----CCeEEEEECC----------
Confidence            567899999988776666665654  489999999874          4555553     3478888752          


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCC-CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQN-PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR  175 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  175 (325)
                                      .++. ......|.+.|.+++|+|++ ..++++|+.||.|++||+..          ......+.
T Consensus       688 ----------------~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~----------~~~~~~~~  740 (1249)
T 3sfz_A          688 ----------------TGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ----------KECRNTMF  740 (1249)
T ss_dssp             ----------------TCCE-EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS----------SSEEEEEC
T ss_pred             ----------------CCce-EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC----------cchhheec
Confidence                            1222 22345799999999999953 35899999999999999987          34567788


Q ss_pred             cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcc--------------------------------------
Q 020480          176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL--------------------------------------  217 (325)
Q Consensus       176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--------------------------------------  217 (325)
                      +|...|.+++|+|++. .+++|+.||.|++||++.+.....+                                      
T Consensus       741 ~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~  819 (1249)
T 3sfz_A          741 GHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN  819 (1249)
T ss_dssp             CCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETT
T ss_pred             CCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCC
Confidence            9999999999999998 8999999999999998765211000                                      


Q ss_pred             ----------cceEe-eecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC
Q 020480          218 ----------EAMQI-FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR  286 (325)
Q Consensus       218 ----------~~~~~-~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~  286 (325)
                                ..... ..+|...|.+++|+|++ .++++++.||.|++||+.++.   .+..+.+|...|.+++|+|+|.
T Consensus       820 ~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~---~~~~~~~h~~~v~~v~~spdg~  895 (1249)
T 3sfz_A          820 KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRL---KVADCRGHLSWVHGVMFSPDGS  895 (1249)
T ss_dssp             EEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTE---EEEEECCCSSCEEEEEECTTSS
T ss_pred             cEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCc---eeeecCCCccceEEEEECCCCC
Confidence                      00111 12678899999999987 699999999999999999887   4888899999999999999998


Q ss_pred             c--cCCCCceEEeeecc
Q 020480          287 L--SHEDTCTCTHRHSR  301 (325)
Q Consensus       287 ~--~~~~d~~~~~~~~~  301 (325)
                      .  +++.|+++++|+..
T Consensus       896 ~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          896 SFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             EEEEEETTSCEEEEEHH
T ss_pred             EEEEEeCCCeEEEEEcc
Confidence            4  88999999999865

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.87  E-value=6.9e-20  Score=164.49  Aligned_cols=174  Identities=19%  Similarity=0.223  Sum_probs=143.3

Q ss_pred             CCCCCCceEE-EEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEec
Q 020480          109 FGCANGKVQI-IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS  187 (325)
Q Consensus       109 ~~~~~~~~~~-~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  187 (325)
                      |+...+++.. .....|...|++|+|+|+| ++||+|+.||.|++||+..          .+.+..+.+|...+.+++|+
T Consensus       130 Wd~~tg~~~~~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~----------~~~~~~~~~h~~~v~~~s~~  198 (420)
T 4gga_A          130 WSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQ----------QKRLRNMTSHSARVGSLSWN  198 (420)
T ss_dssp             EETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTT----------TEEEEEECCCSSCEEEEEEE
T ss_pred             EECCCCCEEEEEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCC----------CcEEEEEeCCCCceEEEeeC
Confidence            3334454433 3334688999999999998 7999999999999999987          45577889999999999986


Q ss_pred             CCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC-CCe
Q 020480          188 KFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-KPV  266 (325)
Q Consensus       188 p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~  266 (325)
                      +  . ++++|+.|+.+++||.+...     ..+..+.+|...+..+.|+|++ .++++++.|+.+++||.+.++.. ..+
T Consensus       199 ~--~-~l~sgs~d~~i~~~d~~~~~-----~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~  269 (420)
T 4gga_A          199 S--Y-ILSSGSRSGHIHHHDVRVAE-----HHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPL  269 (420)
T ss_dssp             T--T-EEEEEETTSEEEEEETTSSS-----CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCS
T ss_pred             C--C-EEEEEeCCCceeEeeecccc-----eeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceee
Confidence            4  4 89999999999999998754     3467788999999999999987 69999999999999999876532 245


Q ss_pred             eEeeccCCCeeEEEeCCCCCc-----cCCCCceEEeeecce
Q 020480          267 QSVVAHQSEVGVSILNASFRL-----SHEDTCTCTHRHSRY  302 (325)
Q Consensus       267 ~~~~~h~~~v~~i~~~p~~~~-----~~~~d~~~~~~~~~~  302 (325)
                      .....|...|.+++|+|.+.-     .++.|+++++|+++.
T Consensus       270 ~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t  310 (420)
T 4gga_A          270 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS  310 (420)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT
T ss_pred             eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc
Confidence            667789999999999997662     467899999998743

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.87  E-value=5.6e-21  Score=172.34  Aligned_cols=214  Identities=18%  Similarity=0.241  Sum_probs=167.5

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.++++|+.++..+...+..|..  ++.+++|  +.          ..++.|+..     ..|.+|++.          
T Consensus       151 ~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~--~~----------~~l~sg~~d-----g~i~vwd~~----------  201 (435)
T 1p22_A          151 RDNTIKIWDKNTLECKRILTGHTG--SVLCLQY--DE----------RVIITGSSD-----STVRVWDVN----------  201 (435)
T ss_dssp             SSSCEEEEESSSCCEEEEECCCSS--CEEEEEC--CS----------SEEEEEETT-----SCEEEEESS----------
T ss_pred             CCCeEEEEeCCCCeEEEEEcCCCC--cEEEEEE--CC----------CEEEEEcCC-----CeEEEEECC----------
Confidence            467899999888776666666654  4777777  22          246666543     368888653          


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCC-CCcEEEe
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGAC-SPDLRLR  175 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~-~~~~~~~  175 (325)
                                      .++. ......|.+.|.+++|++   ..+++|+.||.|++||+..        +.. .....+.
T Consensus       202 ----------------~~~~-~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~--------~~~~~~~~~~~  253 (435)
T 1p22_A          202 ----------------TGEM-LNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMAS--------PTDITLRRVLV  253 (435)
T ss_dssp             ----------------SCCE-EEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSS--------SSCCEEEEEEC
T ss_pred             ----------------CCcE-EEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCC--------CCCceeeeEec
Confidence                            1222 223457999999999975   5899999999999999986        211 1125677


Q ss_pred             cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEE
Q 020480          176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW  255 (325)
Q Consensus       176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iw  255 (325)
                      +|...|.+++|  ++. .+++|+.||.|++||++++      .++..+.+|...|.+++|+  + .++++|+.||.|++|
T Consensus       254 ~~~~~v~~~~~--~~~-~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iw  321 (435)
T 1p22_A          254 GHRAAVNVVDF--DDK-YIVSASGDRTIKVWNTSTC------EFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLW  321 (435)
T ss_dssp             CCSSCEEEEEE--ETT-EEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEEE--T-TEEEEEETTSCEEEE
T ss_pred             CCCCcEEEEEe--CCC-EEEEEeCCCeEEEEECCcC------cEEEEEcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEE
Confidence            99999999999  455 8999999999999999987      4678889999999999995  3 589999999999999


Q ss_pred             EccCCCCCCCeeEeeccCCCeeEEEeCCCCCccCCCCceEEeeecce
Q 020480          256 DLRTPSVSKPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHSRY  302 (325)
Q Consensus       256 d~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~~~  302 (325)
                      |+++++   .+..+.+|...|.+++|++...++++.|+.+++|+++.
T Consensus       322 d~~~~~---~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~  365 (435)
T 1p22_A          322 DIECGA---CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVA  365 (435)
T ss_dssp             ETTTCC---EEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHH
T ss_pred             ECCCCC---EEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCC
Confidence            999987   48888999999999999554445899999999999754

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.87  E-value=6.7e-21  Score=178.51  Aligned_cols=206  Identities=10%  Similarity=0.088  Sum_probs=160.9

Q ss_pred             CCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEE
Q 020480           42 WPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQ  121 (325)
Q Consensus        42 ~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (325)
                      -.+.+++|+|++.          .++++.      .+.+.+|++.-+                       ..+.-.....
T Consensus        19 ~~v~~~~~spdg~----------~l~~~~------~~~v~v~~~~~~-----------------------~~~~~~~~~~   59 (615)
T 1pgu_A           19 NFTTHLSYDPTTN----------AIAYPC------GKSAFVRCLDDG-----------------------DSKVPPVVQF   59 (615)
T ss_dssp             TCCCCCEEETTTT----------EEEEEE------TTEEEEEECCSS-----------------------CCSSCSEEEE
T ss_pred             CceeEEEECCCCC----------EEEEec------CCeEEEEECCCC-----------------------CCccccceEE
Confidence            3477899999875          466665      247888876311                       0000112234


Q ss_pred             eccCCC-eeEEEecC--CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480          122 INHDGE-VNRARYMP--QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       122 ~~h~~~-v~~v~~~~--~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      .+|.+. |++++|+|  ++ .+||+|+.||.|++|++.......  .........+..|...|.+++|+|++. +|++++
T Consensus        60 ~~h~~~~v~~~~~sp~~~~-~~l~s~~~dg~v~vw~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~  135 (615)
T 1pgu_A           60 TGHGSSVVTTVKFSPIKGS-QYLCSGDESGKVIVWGWTFDKESN--SVEVNVKSEFQVLAGPISDISWDFEGR-RLCVVG  135 (615)
T ss_dssp             CTTTTSCEEEEEECSSTTC-CEEEEEETTSEEEEEEEEEEGGGT--EEEEEEEEEEECCSSCEEEEEECTTSS-EEEEEE
T ss_pred             ecCCCceEEEEEECcCCCC-CEEEEecCCCEEEEEeCCCCcccc--cccccccchhhcccccEEEEEEeCCCC-EEEEec
Confidence            679999 99999999  88 799999999999999996400000  001244667788999999999999998 899998


Q ss_pred             CC----CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC
Q 020480          199 DD----AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS  274 (325)
Q Consensus       199 ~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~  274 (325)
                      .+    +.|++||..        ..+..+.+|...|.+++|+|++..++++++.|+.|++||+++.+   .+..+.+|..
T Consensus       136 ~~~~~~~~v~~~d~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~---~~~~~~~~~~  204 (615)
T 1pgu_A          136 EGRDNFGVFISWDSG--------NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK---FSASDRTHHK  204 (615)
T ss_dssp             CCSSCSEEEEETTTC--------CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE---EEEEECSSSC
T ss_pred             cCCCCccEEEEEECC--------CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc---eeeeecccCC
Confidence            87    789999833        35777889999999999999986689999999999999998877   4788888998


Q ss_pred             ---CeeEEEeCCC-CCc--cCCCCceEEeeecc
Q 020480          275 ---EVGVSILNAS-FRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       275 ---~v~~i~~~p~-~~~--~~~~d~~~~~~~~~  301 (325)
                         .|.+++|+|+ +.+  +++.|+.+++|+++
T Consensus       205 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~  237 (615)
T 1pgu_A          205 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK  237 (615)
T ss_dssp             TTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred             CCceEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence               9999999999 874  78889999999864

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.86  E-value=2.9e-20  Score=162.42  Aligned_cols=163  Identities=8%  Similarity=-0.001  Sum_probs=124.6

Q ss_pred             CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecC--CCCCeEEEEeCCC
Q 020480          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSK--FKEGHLLSGSDDA  201 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p--~~~~~l~s~s~dg  201 (325)
                      ...|.++.|+|.    +++|+.|+.|++|+......... ......+..+. +|...|.+++|+|  ++. ++++|+.||
T Consensus        76 ~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg  149 (343)
T 3lrv_A           76 TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILD-SKTNKVLREIEVDSANEIIYMYGHNEVNTE-YFIWADNRG  149 (343)
T ss_dssp             EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEE-TTTCCEEEEEECCCSSCEEEEECCC---CC-EEEEEETTC
T ss_pred             cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEee-cCCcceeEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCC
Confidence            456778888885    99999999999998764100000 00112133333 6778999999999  888 899999999


Q ss_pred             cEEEEeCCCCCCCCcccceEee-ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeec-cCCCeeEE
Q 020480          202 QICLWDINAAPKNKSLEAMQIF-KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-HQSEVGVS  279 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~i  279 (325)
                      .|++||++.+.      +.... ..+...+.+++|+|++ .+|++|+.||.|++||+++++.  ....+.. |..+|+++
T Consensus       150 ~i~~wd~~~~~------~~~~~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~l  220 (343)
T 3lrv_A          150 TIGFQSYEDDS------QYIVHSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQ--ASSRFPVDEEAKIKEV  220 (343)
T ss_dssp             CEEEEESSSSC------EEEEECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTTS--CCEECCCCTTSCEEEE
T ss_pred             cEEEEECCCCc------EEEEEecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCC--CccEEeccCCCCEEEE
Confidence            99999999763      33333 3455679999999987 6999999999999999999885  2267777 99999999


Q ss_pred             EeCCCCCc--cCCCCceEEeeeccee
Q 020480          280 ILNASFRL--SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       280 ~~~p~~~~--~~~~d~~~~~~~~~~~  303 (325)
                      +|+|+|.+  +++ ++++++|+++..
T Consensus       221 ~fs~~g~~l~s~~-~~~v~iwd~~~~  245 (343)
T 3lrv_A          221 KFADNGYWMVVEC-DQTVVCFDLRKD  245 (343)
T ss_dssp             EECTTSSEEEEEE-SSBEEEEETTSS
T ss_pred             EEeCCCCEEEEEe-CCeEEEEEcCCC
Confidence            99999985  555 559999998765

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.85  E-value=4.3e-19  Score=152.05  Aligned_cols=200  Identities=15%  Similarity=0.090  Sum_probs=156.5

Q ss_pred             HhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCC
Q 020480           34 LVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCAN  113 (325)
Q Consensus        34 ~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (325)
                      .+..|..  ++.+++| |+..          .++.|+.     ++.+.+|++.                          .
T Consensus        13 ~l~~h~~--~v~~~~~-~~~~----------~l~s~~~-----dg~v~vw~~~--------------------------~   48 (313)
T 3odt_A           13 TLKGHDQ--DVRDVVA-VDDS----------KVASVSR-----DGTVRLWSKD--------------------------D   48 (313)
T ss_dssp             EECCCSS--CEEEEEE-EETT----------EEEEEET-----TSEEEEEEES--------------------------S
T ss_pred             HhhCCCC--CcEEEEe-cCCC----------EEEEEEc-----CCcEEEEECC--------------------------C
Confidence            4445544  4888888 7653          4666654     3489999873                          1


Q ss_pred             CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCe
Q 020480          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (325)
Q Consensus       114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  193 (325)
                      +. .......|.+.|.+++|+|++ .++++|+.||.|++|++...       ....+...+.+|...|.+++|.  +. .
T Consensus        49 ~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~--~~-~  116 (313)
T 3odt_A           49 QW-LGTVVYTGQGFLNSVCYDSEK-ELLLFGGKDTMINGVPLFAT-------SGEDPLYTLIGHQGNVCSLSFQ--DG-V  116 (313)
T ss_dssp             SE-EEEEEEECSSCEEEEEEETTT-TEEEEEETTSCEEEEETTCC-------TTSCC-CEECCCSSCEEEEEEE--TT-E
T ss_pred             CE-EEEEeecCCccEEEEEECCCC-CEEEEecCCCeEEEEEeeec-------CCCCcccchhhcccCEEEEEec--CC-E
Confidence            11 223355789999999999988 79999999999999999762       1234567788999999999994  44 8


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeec-c
Q 020480          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-H  272 (325)
Q Consensus       194 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h  272 (325)
                      +++++.||.|++||.  .      .....+..|...+.+++|+|....++++++.||.|++||..  .   .+..+.. |
T Consensus       117 l~~~~~d~~i~~~d~--~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~---~~~~~~~~~  183 (313)
T 3odt_A          117 VISGSWDKTAKVWKE--G------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--K---VIKTFSGIH  183 (313)
T ss_dssp             EEEEETTSEEEEEET--T------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--E---EEEEECSSC
T ss_pred             EEEEeCCCCEEEEcC--C------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--c---eEEEEeccC
Confidence            999999999999992  2      45777888999999999999445799999999999999932  2   3566655 8


Q ss_pred             CCCeeEEEeCCCCCc-cCCCCceEEeeecce
Q 020480          273 QSEVGVSILNASFRL-SHEDTCTCTHRHSRY  302 (325)
Q Consensus       273 ~~~v~~i~~~p~~~~-~~~~d~~~~~~~~~~  302 (325)
                      ...|.+++|+|++.+ +++.|+.+++|+++.
T Consensus       184 ~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~  214 (313)
T 3odt_A          184 NDVVRHLAVVDDGHFISCSNDGLIKLVDMHT  214 (313)
T ss_dssp             SSCEEEEEEEETTEEEEEETTSEEEEEETTT
T ss_pred             cccEEEEEEcCCCeEEEccCCCeEEEEECCc
Confidence            999999999999886 888999999999763

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.85  E-value=1.3e-20  Score=163.76  Aligned_cols=158  Identities=9%  Similarity=0.009  Sum_probs=134.3

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCC-CCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA-CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      +|.+.|++++|+|++ .+|++|+.||.|++|++..        +. ..+...+.+|...|.+++|+|++..+|++|+.||
T Consensus         9 ~h~~~v~~~~~s~~~-~~l~~~~~d~~v~iw~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg   79 (342)
T 1yfq_A            9 APKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDI--------QAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG   79 (342)
T ss_dssp             CCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEET--------TTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred             CCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEeCC--------CCccccceeeeecCCceEEEEECCCCCcEEEEEcCCC
Confidence            699999999999988 6999999999999999986        11 1124556689999999999998642699999999


Q ss_pred             cEEEEeC-CCCCCCCcccceEeeec--CCccEEEEEeecCCCcEEEEEecCCcEEEEEccC---------CCCCCCeeEe
Q 020480          202 QICLWDI-NAAPKNKSLEAMQIFKV--HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT---------PSVSKPVQSV  269 (325)
Q Consensus       202 ~i~iwd~-~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~  269 (325)
                      .|++||+ ..+       ....+.+  |...|.+++|+| + .++++++.|+.|++||+++         .+.   +..+
T Consensus        80 ~i~~wd~~~~~-------~~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~  147 (342)
T 1yfq_A           80 EILKVDLIGSP-------SFQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLN---SNNT  147 (342)
T ss_dssp             CEEEECSSSSS-------SEEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESC---SSSS
T ss_pred             eEEEEEeccCC-------ceEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCe---eeEE
Confidence            9999999 765       2456777  999999999999 5 6999999999999999997         553   5555


Q ss_pred             eccCCCeeEEEeCCCCCccCCCCceEEeeecce
Q 020480          270 VAHQSEVGVSILNASFRLSHEDTCTCTHRHSRY  302 (325)
Q Consensus       270 ~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~~~  302 (325)
                      . |...|.+++|+|++.++++.++.+++|+++.
T Consensus       148 ~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~  179 (342)
T 1yfq_A          148 K-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL  179 (342)
T ss_dssp             S-SCCCEEEEEECSSEEEEEESTTEEEEEESSC
T ss_pred             e-eCCceEEEEecCCcEEEEeCCCeEEEEECCc
Confidence            5 8899999999999966899999999999876

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.85  E-value=3.7e-20  Score=181.07  Aligned_cols=164  Identities=10%  Similarity=0.028  Sum_probs=133.8

Q ss_pred             ceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeE
Q 020480          115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL  194 (325)
Q Consensus       115 ~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  194 (325)
                      .+......+|.+.|++++|+|++ .+||+|+.||.|++|+...          ..... ...|...|.+++|+| +. +|
T Consensus         7 ~~~~~~~~gh~~~V~~lafspdg-~~lAsgs~Dg~I~lw~~~~----------~~~~~-~~~~~~~V~~l~fsp-g~-~L   72 (902)
T 2oaj_A            7 SLAETNKYGMSSKPIAAAFDFTQ-NLLAIATVTGEVHIYGQQQ----------VEVVI-KLEDRSAIKEMRFVK-GI-YL   72 (902)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTT-TEEEEEETTSEEEEECSTT----------CEEEE-ECSSCCCEEEEEEET-TT-EE
T ss_pred             eeccccccCCCCCcEEEEECCCC-CEEEEEeCCCEEEEEeCCC----------cEEEE-EcCCCCCEEEEEEcC-CC-EE
Confidence            34555677899999999999998 7999999999999999865          22222 235788999999999 76 89


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCe--------
Q 020480          195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV--------  266 (325)
Q Consensus       195 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------  266 (325)
                      ++++.|++|++||++++      .++..+. |...|++++|+|++ .++++|+.||.|++||+++.... +.        
T Consensus        73 ~S~s~D~~v~lWd~~~~------~~~~~~~-~~~~V~~v~~sp~g-~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~  143 (902)
T 2oaj_A           73 VVINAKDTVYVLSLYSQ------KVLTTVF-VPGKITSIDTDASL-DWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKS  143 (902)
T ss_dssp             EEEETTCEEEEEETTTC------SEEEEEE-CSSCEEEEECCTTC-SEEEEEETTSCEEEEETTTTEEE-EEEECCHHHH
T ss_pred             EEEECcCeEEEEECCCC------cEEEEEc-CCCCEEEEEECCCC-CEEEEEcCCCcEEEEECCCCccc-cceecccccc
Confidence            99999999999999876      3455555 66789999999997 69999999999999999887620 00        


Q ss_pred             -eEeeccCCCeeEEEeCCCC--C-ccCCCCceEEeeecce
Q 020480          267 -QSVVAHQSEVGVSILNASF--R-LSHEDTCTCTHRHSRY  302 (325)
Q Consensus       267 -~~~~~h~~~v~~i~~~p~~--~-~~~~~d~~~~~~~~~~  302 (325)
                       ....+|.++|.+++|+|++  . ++++.|+++ +|+++.
T Consensus       144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~  182 (902)
T 2oaj_A          144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE  182 (902)
T ss_dssp             HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT
T ss_pred             ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC
Confidence             2336789999999999964  2 388999999 999754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.85  E-value=4.7e-20  Score=166.68  Aligned_cols=212  Identities=17%  Similarity=0.194  Sum_probs=169.0

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.++++|+.....+...+..|..  ++.+++|.+.            .++.|+..     ..+.+|++.          
T Consensus       137 ~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~------------~l~s~~~d-----g~i~vwd~~----------  187 (445)
T 2ovr_B          137 DDNTLKVWSAVTGKCLRTLVGHTG--GVWSSQMRDN------------IIISGSTD-----RTLKVWNAE----------  187 (445)
T ss_dssp             TTSCEEEEETTTCCEEEECCCCSS--CEEEEEEETT------------EEEEEETT-----SCEEEEETT----------
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCC--CEEEEEecCC------------EEEEEeCC-----CeEEEEECC----------
Confidence            567899999887766666666654  4778888632            45555542     368888652          


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG  176 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  176 (325)
                                      .++ .......|...|.++.|++   ..+++|+.||.|++||+..          ...+..+.+
T Consensus       188 ----------------~~~-~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~----------~~~~~~~~~  237 (445)
T 2ovr_B          188 ----------------TGE-CIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIET----------GQCLHVLMG  237 (445)
T ss_dssp             ----------------TTE-EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSS----------CCEEEEEEC
T ss_pred             ----------------cCc-EEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCC----------CcEEEEEcC
Confidence                            122 1223457999999999964   5799999999999999987          355778889


Q ss_pred             CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEE
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD  256 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd  256 (325)
                      |...|.+++|  ++. .+++|+.||.|++||++.+      .++..+.+|...|.+++|  ++ ..+++|+.||.|++||
T Consensus       238 ~~~~v~~~~~--~~~-~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d  305 (445)
T 2ovr_B          238 HVAAVRCVQY--DGR-RVVSGAYDFMVKVWDPETE------TCLHTLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWD  305 (445)
T ss_dssp             CSSCEEEEEE--CSS-CEEEEETTSCEEEEEGGGT------EEEEEECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEE
T ss_pred             CcccEEEEEE--CCC-EEEEEcCCCEEEEEECCCC------cEeEEecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEE
Confidence            9999999999  455 8999999999999999876      567788899999999999  44 6899999999999999


Q ss_pred             ccCCCCCCCeeEeeccCCCeeEEEeCCCCCccCCCCceEEeeecce
Q 020480          257 LRTPSVSKPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHSRY  302 (325)
Q Consensus       257 ~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~~~  302 (325)
                      +++++   .+..+.+|...+.++.++++-.++++.|+.+++|+++.
T Consensus       306 ~~~~~---~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~  348 (445)
T 2ovr_B          306 VETGN---CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKT  348 (445)
T ss_dssp             TTTCC---EEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             CCCCC---EEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCC
Confidence            99988   48888899999999999876556899999999999753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.85  E-value=1.6e-20  Score=167.26  Aligned_cols=149  Identities=8%  Similarity=-0.043  Sum_probs=117.1

Q ss_pred             cEEEEEecCCeEEEEeCCCCCCCCCCCCCC---CCcEEEecCCCceEEEEecC--------CCCCeEEEEeCCCcEEEEe
Q 020480          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGAC---SPDLRLRGHSTEGYGLSWSK--------FKEGHLLSGSDDAQICLWD  207 (325)
Q Consensus       139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~l~~~p--------~~~~~l~s~s~dg~i~iwd  207 (325)
                      .++|+|+.|++|++||...        +..   .++..+.+|.+.|.+++|+|        ++. +|+||+.|++|+|||
T Consensus       102 ~~las~~~d~~v~lw~~~~--------~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~tv~~Wd  172 (393)
T 4gq1_A          102 LFLACVCQDNTVRLIITKN--------ETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDCTLIIWR  172 (393)
T ss_dssp             EEEEEEETTSCEEEEEEET--------TEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTSEEEEEE
T ss_pred             CEEEEEeCCCcEEEEECCC--------CccceeeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEECCCeEEEEE
Confidence            6899999999999999876        211   11223568999999999998        566 899999999999999


Q ss_pred             CCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCe---------------------
Q 020480          208 INAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV---------------------  266 (325)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------------------  266 (325)
                      ++..      .++..+..|...|.+++|+|++.++|++|+.||+|++||++++......                     
T Consensus       173 ~~~~------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~  246 (393)
T 4gq1_A          173 LTDE------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN  246 (393)
T ss_dssp             EETT------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred             CCCC------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence            9876      4566677889999999999988779999999999999999987531110                     


Q ss_pred             -eEeeccCCCeeEEEeC-CCCCc--cCCCCceEEeeecce
Q 020480          267 -QSVVAHQSEVGVSILN-ASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       267 -~~~~~h~~~v~~i~~~-p~~~~--~~~~d~~~~~~~~~~  302 (325)
                       ....+|...+.++.|+ |++..  +++.|+++++|++..
T Consensus       247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~  286 (393)
T 4gq1_A          247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFA  286 (393)
T ss_dssp             -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--
T ss_pred             eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECcc
Confidence             1123577889999997 67773  889999999998754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.85  E-value=5.4e-20  Score=161.56  Aligned_cols=223  Identities=10%  Similarity=0.068  Sum_probs=149.9

Q ss_pred             HHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccC
Q 020480           18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDAR   97 (325)
Q Consensus        18 ~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~   97 (325)
                      +.++++|+.++..+...+.   ..-++.++.|.++.            ++++.      ++.+++|++.-..  .     
T Consensus        80 d~~v~iWd~~~~~~~~~~~---~~~~v~~v~~~~~~------------~~~~~------~~~i~i~d~~~~~--~-----  131 (355)
T 3vu4_A           80 KEVVHIWDDVKKQDVSRIK---VDAPVKDLFLSREF------------IVVSY------GDVISVFKFGNPW--K-----  131 (355)
T ss_dssp             TTEEEEEETTTTEEEEEEE---CSSCEEEEEECSSE------------EEEEE------TTEEEEEESSTTC--C-----
T ss_pred             ccEEEEEECCCCcEEEEEE---CCCceEEEEEcCCE------------EEEEE------cCEEEEEECCCCc--e-----
Confidence            3589999988765544332   23368888887752            33332      2478888763110  0     


Q ss_pred             CCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEE--EecCCeEEEEeCCCCCCCCC-----CCCCCCC
Q 020480           98 HYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIAT--KTVSAEVYVFDYSKHPSKPP-----LDGACSP  170 (325)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~--g~~dg~v~vwd~~~~~~~~~-----~~~~~~~  170 (325)
                             .       ...+..        ....+++++   .++|+  |+.+|.|++||+........     ......+
T Consensus       132 -------~-------~~~~~~--------~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p  186 (355)
T 3vu4_A          132 -------R-------ITDDIR--------FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILG  186 (355)
T ss_dssp             -------B-------SSCCEE--------EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------
T ss_pred             -------e-------eEEecc--------CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCc
Confidence                   0       001111        233455666   34555  68999999999986210000     0001123


Q ss_pred             -cEEEecCCCceEEEEecCCCCCeEEEEeCCCc-EEEEeCCCCCCCCcccceEeee-c-CCccEEEEEeecCCCcEEEEE
Q 020480          171 -DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ-ICLWDINAAPKNKSLEAMQIFK-V-HEGVVEDVAWHLRHEYLFGSV  246 (325)
Q Consensus       171 -~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~-~-~~~~v~~v~~~p~~~~~l~s~  246 (325)
                       +..+.+|...|++++|+|++. +|++|+.|++ |++||++++      .++..+. + |...|++++|+|++ .+|+++
T Consensus       187 ~~~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd~~~~------~~~~~~~~g~h~~~v~~~~~s~~~-~~l~s~  258 (355)
T 3vu4_A          187 KGVLIKAHTNPIKMVRLNRKSD-MVATCSQDGTIIRVFKTEDG------VLVREFRRGLDRADVVDMKWSTDG-SKLAVV  258 (355)
T ss_dssp             CCEEECCCSSCEEEEEECTTSS-EEEEEETTCSEEEEEETTTC------CEEEEEECTTCCSCEEEEEECTTS-CEEEEE
T ss_pred             ccEEEEccCCceEEEEECCCCC-EEEEEeCCCCEEEEEECCCC------cEEEEEEcCCCCCcEEEEEECCCC-CEEEEE
Confidence             678899999999999999998 9999999998 999999987      4577777 5 99999999999987 699999


Q ss_pred             ecCCcEEEEEccCCCCCCCeeEe---------------------eccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          247 GDDQYLLIWDLRTPSVSKPVQSV---------------------VAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       247 ~~dg~i~iwd~~~~~~~~~~~~~---------------------~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      +.|++|++||++..... ....+                     ..+..+...++|++++..  +++.|+.++.|++..
T Consensus       259 s~d~~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          259 SDKWTLHVFEIFNDQDN-KRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             ETTCEEEEEESSCCSCC-CSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             ECCCEEEEEEccCCCCc-ccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence            99999999999865421 11111                     111223477999999973  777899999987654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.85  E-value=6.4e-20  Score=165.79  Aligned_cols=212  Identities=20%  Similarity=0.321  Sum_probs=167.1

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.++++|+.+...+...+..|..  ++.++.|.+.            .++.|+..     ..+.+|++.          
T Consensus       177 ~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~------------~l~s~s~d-----g~i~~wd~~----------  227 (445)
T 2ovr_B          177 TDRTLKVWNAETGECIHTLYGHTS--TVRCMHLHEK------------RVVSGSRD-----ATLRVWDIE----------  227 (445)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSS--CEEEEEEETT------------EEEEEETT-----SEEEEEESS----------
T ss_pred             CCCeEEEEECCcCcEEEEECCCCC--cEEEEEecCC------------EEEEEeCC-----CEEEEEECC----------
Confidence            567899999988766655655554  4777777532            36566542     478888653          


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG  176 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  176 (325)
                                      .++. ......|...|.++.|  ++ ..+++|+.||.|++||+..          ...+..+.+
T Consensus       228 ----------------~~~~-~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~  277 (445)
T 2ovr_B          228 ----------------TGQC-LHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPET----------ETCLHTLQG  277 (445)
T ss_dssp             ----------------SCCE-EEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGG----------TEEEEEECC
T ss_pred             ----------------CCcE-EEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCC----------CcEeEEecC
Confidence                            1111 2234579999999999  34 6899999999999999986          355778889


Q ss_pred             CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEE
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD  256 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd  256 (325)
                      |...|.+++|  ++. .+++|+.||.|++||++++      .++..+.+|...+.++.+++   .++++|+.||.|++||
T Consensus       278 ~~~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~vwd  345 (445)
T 2ovr_B          278 HTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETG------NCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWD  345 (445)
T ss_dssp             CSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTC------CEEEEECCCCSCEEEEEEET---TEEEEEETTSCEEEEE
T ss_pred             CCCceEEEEE--CCC-EEEEEeCCCeEEEEECCCC------CEEEEEcCCcccEEEEEEeC---CEEEEEeCCCeEEEEE
Confidence            9999999999  455 8999999999999999987      45778889999999888863   5899999999999999


Q ss_pred             ccCCCCCCCeeEeec---cCCCeeEEEeCCCCCccCCCCceEEeeecce
Q 020480          257 LRTPSVSKPVQSVVA---HQSEVGVSILNASFRLSHEDTCTCTHRHSRY  302 (325)
Q Consensus       257 ~~~~~~~~~~~~~~~---h~~~v~~i~~~p~~~~~~~~d~~~~~~~~~~  302 (325)
                      +++++.   +..+..   |..+|.+++|+++-.++++.|+.+++|++..
T Consensus       346 ~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~  391 (445)
T 2ovr_B          346 IKTGQC---LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT  391 (445)
T ss_dssp             TTTCCE---EEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred             CCCCcE---EEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCC
Confidence            998874   777765   8899999999875556899999999998753

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.83  E-value=2.2e-18  Score=148.00  Aligned_cols=166  Identities=20%  Similarity=0.218  Sum_probs=137.2

Q ss_pred             EEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEE
Q 020480          117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (325)
Q Consensus       117 ~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  196 (325)
                      .......|...|++++|+|++ ++||+|+.||.|++|++..          .+.+..+.+|...+.++.+.+  . .+++
T Consensus        59 ~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~----------~~~~~~~~~h~~~~~~~~~~~--~-~l~s  124 (318)
T 4ggc_A           59 QLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQ----------QKRLRNMTSHSARVGSLSWNS--Y-ILSS  124 (318)
T ss_dssp             EEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTT----------TEEEEEEECCSSCEEEEEEET--T-EEEE
T ss_pred             EEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCC----------ceeEEEecCccceEEEeecCC--C-EEEE
Confidence            333445688999999999998 7999999999999999987          455778889999988877654  4 8999


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC-CCeeEeeccCCC
Q 020480          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-KPVQSVVAHQSE  275 (325)
Q Consensus       197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~  275 (325)
                      ++.++.+++|+.....     ..+..+.+|...+..+.+++.+ .++++++.||.|++||+++++.. ........|...
T Consensus       125 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  198 (318)
T 4ggc_A          125 GSRSGHIHHHDVRVAE-----HHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA  198 (318)
T ss_dssp             EETTSEEEEEETTSSS-----CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSC
T ss_pred             EecCCceEeeecCCCc-----eeEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeecccCCc
Confidence            9999999999988764     3466788999999999999987 69999999999999999986632 124455678889


Q ss_pred             eeEEEeCCCCCc-----cCCCCceEEeeecce
Q 020480          276 VGVSILNASFRL-----SHEDTCTCTHRHSRY  302 (325)
Q Consensus       276 v~~i~~~p~~~~-----~~~~d~~~~~~~~~~  302 (325)
                      |.+++++|.+..     +++.++++++|+.+.
T Consensus       199 v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~  230 (318)
T 4ggc_A          199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS  230 (318)
T ss_dssp             EEEEEECTTSTTEEEEEECTTTCEEEEEETTT
T ss_pred             eEEEEecCCCCcEEEEEecCCCCEEEEEeccc
Confidence            999999997652     678889999998644

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.81  E-value=3.4e-18  Score=151.52  Aligned_cols=218  Identities=11%  Similarity=0.090  Sum_probs=157.5

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.++++|+.....+...+..+.   .+.+++|.|++.          .+++...    .++.|.++++.          
T Consensus        10 ~d~~v~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~----------~l~~~~~----~d~~i~v~d~~----------   62 (391)
T 1l0q_A           10 ESDNISVIDVTSNKVTATIPVGS---NPMGAVISPDGT----------KVYVANA----HSNDVSIIDTA----------   62 (391)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSS---SEEEEEECTTSS----------EEEEEEG----GGTEEEEEETT----------
T ss_pred             CCCEEEEEECCCCeEEEEeecCC---CcceEEECCCCC----------EEEEECC----CCCeEEEEECC----------
Confidence            45678999988776655444432   368999999875          3333321    12467777542          


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG  176 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  176 (325)
                                      .+  +....+.+...+.+++|+|++..+++++..++.|++||+..          .+.+..+..
T Consensus        63 ----------------~~--~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~----------~~~~~~~~~  114 (391)
T 1l0q_A           63 ----------------TN--NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTS----------NTVAGTVKT  114 (391)
T ss_dssp             ----------------TT--EEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT----------TEEEEEEEC
T ss_pred             ----------------CC--eEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCC----------CeEEEEEeC
Confidence                            12  22344555669999999999954556767789999999987          233444544


Q ss_pred             CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEE
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD  256 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd  256 (325)
                       ...+.+++|+|++..++++++.++.|++||++++      ..+..+..+ ..+.+++|+|++..++++++.++.|++||
T Consensus       115 -~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~------~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d  186 (391)
T 1l0q_A          115 -GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK------AVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVID  186 (391)
T ss_dssp             -SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             -CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC------cEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence             4578999999999844478889999999999876      345555544 45799999999865667888999999999


Q ss_pred             ccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCC---CCceEEeeecc
Q 020480          257 LRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHE---DTCTCTHRHSR  301 (325)
Q Consensus       257 ~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~---~d~~~~~~~~~  301 (325)
                      +++.+.   +..+. +...+.+++|+|+++.  .++   .++.+++|+..
T Consensus       187 ~~~~~~---~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~  232 (391)
T 1l0q_A          187 TVTNSV---IDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (391)
T ss_dssp             TTTTEE---EEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             CCCCeE---EEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence            998763   44443 5678999999999974  343   68899999875

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.80  E-value=4.6e-19  Score=159.71  Aligned_cols=169  Identities=7%  Similarity=0.045  Sum_probs=125.5

Q ss_pred             EeccCCCeeEEEecCCCCcEEE----EEecCCeEEEEeCCCCCCCCCCCCCCCC---cEEEecCCCceEEEEecCCCCCe
Q 020480          121 QINHDGEVNRARYMPQNPFLIA----TKTVSAEVYVFDYSKHPSKPPLDGACSP---DLRLRGHSTEGYGLSWSKFKEGH  193 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la----~g~~dg~v~vwd~~~~~~~~~~~~~~~~---~~~~~~h~~~v~~l~~~p~~~~~  193 (325)
                      .+.+.+.|++++|+|++ ++||    +|+.|+.|++||+........  ...++   ...+.+|...|.+++|+|+...+
T Consensus        88 ~~~~~~~v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~  164 (434)
T 2oit_A           88 LVPMKFPIHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAK--QQKRPFAYHKLLKDAGGMVIDMKWNPTVPSM  164 (434)
T ss_dssp             EECCSSCEEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTC--SSCCCSEEEECCCSGGGSEEEEEECSSCTTE
T ss_pred             cccCCCcccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCc--CCcceeeeeeccCCCCCceEEEEECCCCCCE
Confidence            45688899999999998 5777    788999999999865100000  00122   23455799999999999985559


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc-
Q 020480          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-  272 (325)
Q Consensus       194 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-  272 (325)
                      |++++.||+|++||++.+      .......+|...|.+++|+|++ .+|++|+.||.|++||++ +.   ....+..| 
T Consensus       165 las~s~Dg~v~iwD~~~~------~~~~~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~---~~~~~~~~~  233 (434)
T 2oit_A          165 VAVCLADGSIAVLQVTET------VKVCATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQ---EKKVIPCPP  233 (434)
T ss_dssp             EEEEETTSCEEEEEESSS------EEEEEEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CC---EEEEECCCT
T ss_pred             EEEEECCCeEEEEEcCCC------cceeeccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Cc---ccccccCCc
Confidence            999999999999999976      2344556788899999999997 689999999999999998 33   23333322 


Q ss_pred             ------CCCeeEEEeCCCCCcc---CCCCc------eEEeeeccee
Q 020480          273 ------QSEVGVSILNASFRLS---HEDTC------TCTHRHSRYL  303 (325)
Q Consensus       273 ------~~~v~~i~~~p~~~~~---~~~d~------~~~~~~~~~~  303 (325)
                            ...|.+++|++++.+.   ...++      .+++|+++..
T Consensus       234 ~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          234 FYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             ccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence                  3379999999988863   22232      3777877654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.78  E-value=1.1e-17  Score=148.27  Aligned_cols=217  Identities=10%  Similarity=0.001  Sum_probs=158.5

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.++++|+.....+...+..+.   ++..++|+|++.          .++++..    ..+.|.++++.          
T Consensus        52 ~d~~i~v~d~~~~~~~~~~~~~~---~v~~~~~spdg~----------~l~~~~~----~~~~v~v~d~~----------  104 (391)
T 1l0q_A           52 HSNDVSIIDTATNNVIATVPAGS---SPQGVAVSPDGK----------QVYVTNM----ASSTLSVIDTT----------  104 (391)
T ss_dssp             GGTEEEEEETTTTEEEEEEECSS---SEEEEEECTTSS----------EEEEEET----TTTEEEEEETT----------
T ss_pred             CCCeEEEEECCCCeEEEEEECCC---CccceEECCCCC----------EEEEEEC----CCCEEEEEECC----------
Confidence            46789999987766554443333   678999999874          3444432    22467777542          


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG  176 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  176 (325)
                                      .+  +....+.+...+.+++|+|++..++++++.++.|++||+..          .+.+..+..
T Consensus       105 ----------------~~--~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~----------~~~~~~~~~  156 (391)
T 1l0q_A          105 ----------------SN--TVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT----------KAVINTVSV  156 (391)
T ss_dssp             ----------------TT--EEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT----------TEEEEEEEC
T ss_pred             ----------------CC--eEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC----------CcEEEEEec
Confidence                            12  22334556678899999999854558888899999999976          233455555


Q ss_pred             CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe---cCCcEE
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG---DDQYLL  253 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~---~dg~i~  253 (325)
                      + ..+.+++|+|++..++++++.++.|++||++.+      .....+. +...+.+++|+|++. .+++++   .++.|+
T Consensus       157 ~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~------~~~~~~~-~~~~~~~~~~~~~g~-~l~~~~~~~~~~~v~  227 (391)
T 1l0q_A          157 G-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN------SVIDTVK-VEAAPSGIAVNPEGT-KAYVTNVDKYFNTVS  227 (391)
T ss_dssp             C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------EEEEEEE-CSSEEEEEEECTTSS-EEEEEEECSSCCEEE
T ss_pred             C-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC------eEEEEEe-cCCCccceEECCCCC-EEEEEecCcCCCcEE
Confidence            4 467999999999844578889999999999876      3344443 556789999999985 555555   799999


Q ss_pred             EEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc---cCCCCceEEeeecc
Q 020480          254 IWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL---SHEDTCTCTHRHSR  301 (325)
Q Consensus       254 iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~~  301 (325)
                      +||+++++   .+..+..|. .+.+++|+|+++.   +++.++.+++|+..
T Consensus       228 ~~d~~~~~---~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          228 MIDTGTNK---ITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             EEETTTTE---EEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEECCCCe---EEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence            99999876   366666554 5789999999973   56789999999875

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.78  E-value=1.2e-18  Score=156.94  Aligned_cols=169  Identities=11%  Similarity=0.047  Sum_probs=126.8

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCC------CCCcEEEecCCCceEEEEecCCCCCeEE----
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA------CSPDLRLRGHSTEGYGLSWSKFKEGHLL----  195 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~------~~~~~~~~~h~~~v~~l~~~p~~~~~l~----  195 (325)
                      ..++.+++++.+ .++++|+.++ +++|+.............      ..+... ..+...|.+++|+|++. +|+    
T Consensus        37 ~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~-~lav~~~  112 (434)
T 2oit_A           37 ERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLL-VPMKFPIHHLALSCDNL-TLSACMM  112 (434)
T ss_dssp             SCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEE-ECCSSCEEEEEECTTSC-EEEEEEE
T ss_pred             CCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccc-ccCCCcccEEEEcCCCC-EEEEEEe
Confidence            458899999988 6888888887 888875421110000000      011112 24667899999999998 777    


Q ss_pred             EEeCCCcEEEEeCCCC-----CCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee
Q 020480          196 SGSDDAQICLWDINAA-----PKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV  270 (325)
Q Consensus       196 s~s~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  270 (325)
                      +|+.|+.|+|||++..     .....+..+..+.+|...|.+++|+|++..+|++++.||+|++||+++...   +....
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~---~~~~~  189 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK---VCATL  189 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE---EEEEE
T ss_pred             ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc---eeecc
Confidence            8899999999998754     111111234556779999999999998568999999999999999998753   55566


Q ss_pred             ccCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          271 AHQSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       271 ~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      +|...|.+++|+|+|.+  +++.|+++++|+.+
T Consensus       190 ~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          190 PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            78999999999999985  88899999999987

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.75  E-value=7e-17  Score=144.97  Aligned_cols=217  Identities=8%  Similarity=-0.057  Sum_probs=154.0

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.++++|+.+.......+..+.  -.+..++|.|++.          .+++...    .++.|.++++.          
T Consensus       189 ~d~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~----------~l~~~~~----~~~~i~~~d~~----------  242 (433)
T 3bws_A          189 QANAVHVFDLKTLAYKATVDLTG--KWSKILLYDPIRD----------LVYCSNW----ISEDISVIDRK----------  242 (433)
T ss_dssp             GGTEEEEEETTTCCEEEEEECSS--SSEEEEEEETTTT----------EEEEEET----TTTEEEEEETT----------
T ss_pred             CCCEEEEEECCCceEEEEEcCCC--CCeeEEEEcCCCC----------EEEEEec----CCCcEEEEECC----------
Confidence            45788999987755444443333  3477899999874          3333332    12467777542          


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEe--------cCCeEEEEeCCCCCCCCCCCCCC
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKT--------VSAEVYVFDYSKHPSKPPLDGAC  168 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~--------~dg~v~vwd~~~~~~~~~~~~~~  168 (325)
                                      .+  +....+.+...+.+++|+|++ ..+++++        .||.|++||+..        +  
T Consensus       243 ----------------~~--~~~~~~~~~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~--------~--  293 (433)
T 3bws_A          243 ----------------TK--LEIRKTDKIGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDK--------E--  293 (433)
T ss_dssp             ----------------TT--EEEEECCCCSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTT--------T--
T ss_pred             ----------------CC--cEEEEecCCCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCC--------C--
Confidence                            11  223445566679999999998 5777766        488999999986        2  


Q ss_pred             CCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec
Q 020480          169 SPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD  248 (325)
Q Consensus       169 ~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~  248 (325)
                      +.. ....|...+.+++|+|++..++++++.++.|++||+..+      .....+. +...+.+++|+|++. ++++++.
T Consensus       294 ~~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~------~~~~~~~-~~~~~~~~~~s~dg~-~l~~~~~  364 (433)
T 3bws_A          294 KLI-DTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK------KVQKSIP-VFDKPNTIALSPDGK-YLYVSCR  364 (433)
T ss_dssp             EEE-EEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT------EEEEEEE-CSSSEEEEEECTTSS-EEEEEEC
T ss_pred             cEE-eeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC------cEEEEec-CCCCCCeEEEcCCCC-EEEEEec
Confidence            222 233455688999999999756788899999999999865      3344444 667899999999984 6666655


Q ss_pred             ---------------CCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cC-CCCceEEeeecc
Q 020480          249 ---------------DQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SH-EDTCTCTHRHSR  301 (325)
Q Consensus       249 ---------------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~-~~d~~~~~~~~~  301 (325)
                                     ||.|++||+.+++.   +..+.. ...+.+++|+|+|+.  ++ +.|+++++|++.
T Consensus       365 ~~~~~~~~~~~~g~~dg~v~~~d~~~~~~---~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          365 GPNHPTEGYLKKGLVLGKVYVIDTTTDTV---KEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             CCCCTTTCTTSCCSSCCEEEEEETTTTEE---EEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             CCCccccccccccccceEEEEEECCCCcE---EEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence                           57999999988773   555554 567999999999984  33 469999999864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.72  E-value=5.3e-16  Score=139.02  Aligned_cols=214  Identities=17%  Similarity=0.157  Sum_probs=147.4

Q ss_pred             HHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCC
Q 020480           19 EEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARH   98 (325)
Q Consensus        19 ~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~   98 (325)
                      .++++|+..... ...+..|.  -++.+++|+|++.          .+++++...  ....|+++++.            
T Consensus       159 ~~i~i~d~~g~~-~~~l~~~~--~~v~~~~~Spdg~----------~la~~s~~~--~~~~i~~~d~~------------  211 (415)
T 2hqs_A          159 YELRVSDYDGYN-QFVVHRSP--QPLMSPAWSPDGS----------KLAYVTFES--GRSALVIQTLA------------  211 (415)
T ss_dssp             EEEEEEETTSCS-CEEEEEES--SCEEEEEECTTSS----------EEEEEECTT--SSCEEEEEETT------------
T ss_pred             ceEEEEcCCCCC-CEEEeCCC--CcceeeEEcCCCC----------EEEEEEecC--CCcEEEEEECC------------
Confidence            578888876532 23333443  3588999999874          465555422  23467777542            


Q ss_pred             CCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCC--eEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480           99 YDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRG  176 (325)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~  176 (325)
                                    .++..  ....|.+.+.+++|+|+|..++++++.++  .|++||+..           .....+..
T Consensus       212 --------------tg~~~--~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~-----------~~~~~l~~  264 (415)
T 2hqs_A          212 --------------NGAVR--QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-----------GQIRQVTD  264 (415)
T ss_dssp             --------------TCCEE--EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-----------CCEEECCC
T ss_pred             --------------CCcEE--EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC-----------CCEEeCcC
Confidence                          22332  34568889999999999943444776665  499999876           22456778


Q ss_pred             CCCceEEEEecCCCCCeEEEEeC-CC--cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC---C
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGSD-DA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD---Q  250 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d---g  250 (325)
                      |...+.+++|+|++. .|++++. ++  .|.+||+..+.       ...+..+...+.+++|+|++. +|++++.+   .
T Consensus       265 ~~~~~~~~~~spdg~-~l~~~s~~~g~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~~spdG~-~l~~~~~~~g~~  335 (415)
T 2hqs_A          265 GRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGA-------PQRITWEGSQNQDADVSSDGK-FMVMVSSNGGQQ  335 (415)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSC-------CEECCCSSSEEEEEEECTTSS-EEEEEEECSSCE
T ss_pred             CCCcccceEECCCCC-EEEEEECCCCCcEEEEEECCCCC-------EEEEecCCCcccCeEECCCCC-EEEEEECcCCce
Confidence            888999999999998 6776665 45  67777887652       233455667899999999984 66666653   5


Q ss_pred             cEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCc---eEEeeec
Q 020480          251 YLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTC---TCTHRHS  300 (325)
Q Consensus       251 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~---~~~~~~~  300 (325)
                      .|++||+.+++    ...+..+. .+.+++|+|+|+.  .++.++   .+.+|++
T Consensus       336 ~i~~~d~~~~~----~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~  385 (415)
T 2hqs_A          336 HIAKQDLATGG----VQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVST  385 (415)
T ss_dssp             EEEEEETTTCC----EEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             EEEEEECCCCC----EEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence            89999999876    34555554 8999999999984  444444   5666764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.72  E-value=5e-17  Score=138.99  Aligned_cols=136  Identities=11%  Similarity=0.071  Sum_probs=99.3

Q ss_pred             cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecC---CCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEe
Q 020480          146 VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK---FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI  222 (325)
Q Consensus       146 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p---~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  222 (325)
                      .|+.|++|++..         ..+.+..+.+|...+..++|++   ++. +|++|+.|++|+|||++++      +++++
T Consensus       155 ~d~~V~~~~~s~---------dG~~~~s~~~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TG------k~l~t  218 (356)
T 2w18_A          155 SDQQVEVMTFAE---------DGGGKENQFLMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTG------QLLKK  218 (356)
T ss_dssp             TTCEEEEEEECT---------TSCEEEEEEECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTC------CEEEE
T ss_pred             CCCcEEEEEECC---------CCceeeeeccCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCC------cEEEE
Confidence            388889998854         1234566778999999999998   556 8999999999999999988      56777


Q ss_pred             eecCC---ccEEEEEeecCCCcE-----------EEEEecCCcEEEEEccCCCCCCCeeEe-----eccCCCeeEEEeCC
Q 020480          223 FKVHE---GVVEDVAWHLRHEYL-----------FGSVGDDQYLLIWDLRTPSVSKPVQSV-----VAHQSEVGVSILNA  283 (325)
Q Consensus       223 ~~~~~---~~v~~v~~~p~~~~~-----------l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~h~~~v~~i~~~p  283 (325)
                      +.+|.   ..+.+++|+|++..+           +++|+.|++|++||..+++.   +..+     .+|...+.+..++ 
T Consensus       219 L~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~---l~v~~~~~p~Gh~~~~lsg~~s-  294 (356)
T 2w18_A          219 MHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS---VGVMLYCLPPGQAGRFLEGDVK-  294 (356)
T ss_dssp             EECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE---EEEEEECCCTTCCCCEEEEEEE-
T ss_pred             EcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE---EEEEEeeccCCCcceeEccccC-
Confidence            77654   357778999987432           36788999999999998874   4433     3566555555555 


Q ss_pred             CCCc--cCCCCceEEeeecce
Q 020480          284 SFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       284 ~~~~--~~~~d~~~~~~~~~~  302 (325)
                       +.+  +++.|+++++||+..
T Consensus       295 -g~~lASgS~DgTIkIWDl~t  314 (356)
T 2w18_A          295 -DHCAAAILTSGTIAIWDLLL  314 (356)
T ss_dssp             -TTEEEEEETTSCEEEEETTT
T ss_pred             -CCEEEEEcCCCcEEEEECCC
Confidence             443  777899999999865

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.72  E-value=1.2e-16  Score=143.38  Aligned_cols=168  Identities=9%  Similarity=0.016  Sum_probs=133.5

Q ss_pred             CCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE-----EEecCCCceEEEEe
Q 020480          112 ANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-----RLRGHSTEGYGLSW  186 (325)
Q Consensus       112 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~~l~~  186 (325)
                      ..+.++....+.....+.+++|+| +..++++++.++.|++||+..        +  ....     .+.+|...|.+++|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~--------g--~~~~~~~~~~~~~~~~~v~~~~~  177 (433)
T 3bws_A          109 EGITHRFISRFKTGFQPKSVRFID-NTRLAIPLLEDEGMDVLDINS--------G--QTVRLSPPEKYKKKLGFVETISI  177 (433)
T ss_dssp             TTCSEEEEEEEECSSCBCCCEESS-SSEEEEEBTTSSSEEEEETTT--------C--CEEEECCCHHHHTTCCEEEEEEE
T ss_pred             CCCcceEEEEEcCCCCceEEEEeC-CCeEEEEeCCCCeEEEEECCC--------C--eEeeecCcccccccCCceeEEEE
Confidence            335566667777777788999999 447888888899999999986        2  2222     34578899999999


Q ss_pred             cCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCe
Q 020480          187 SKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV  266 (325)
Q Consensus       187 ~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  266 (325)
                      +|++. ++++++.|+.|++||++.+      ..+..+..|...+.+++|+|++..++++++.|+.|++||+++++.   +
T Consensus       178 ~~~~~-~~~s~~~d~~v~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~---~  247 (433)
T 3bws_A          178 PEHNE-LWVSQMQANAVHVFDLKTL------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE---I  247 (433)
T ss_dssp             GGGTE-EEEEEGGGTEEEEEETTTC------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE---E
T ss_pred             cCCCE-EEEEECCCCEEEEEECCCc------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE---E
Confidence            99888 8999999999999999876      456677788899999999999865667777899999999998763   5


Q ss_pred             eEeeccCCCeeEEEeCCCCCc--cCC--------CCceEEeeecc
Q 020480          267 QSVVAHQSEVGVSILNASFRL--SHE--------DTCTCTHRHSR  301 (325)
Q Consensus       267 ~~~~~h~~~v~~i~~~p~~~~--~~~--------~d~~~~~~~~~  301 (325)
                      ..+.. ...+.+++|+|+|..  +++        .|+.+++|+.+
T Consensus       248 ~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~  291 (433)
T 3bws_A          248 RKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD  291 (433)
T ss_dssp             EECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT
T ss_pred             EEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC
Confidence            55544 456999999999973  333        47899999864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.65  E-value=1.8e-14  Score=129.08  Aligned_cols=156  Identities=8%  Similarity=0.054  Sum_probs=118.8

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCC---eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEE-E
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSA---EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL-S  196 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~-s  196 (325)
                      ...|...|.+++|+|+| +.||+++.++   .|++||+..        +.   ...+..|...+.+++|+|++. .|+ +
T Consensus       174 l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~t--------g~---~~~l~~~~~~~~~~~~spdg~-~la~~  240 (415)
T 2hqs_A          174 VHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLAN--------GA---VRQVASFPRHNGAPAFSPDGS-KLAFA  240 (415)
T ss_dssp             EEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTT--------CC---EEEEECCSSCEEEEEECTTSS-EEEEE
T ss_pred             EeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCC--------Cc---EEEeecCCCcccCEEEcCCCC-EEEEE
Confidence            45688999999999999 6888888775   999999987        22   345677888999999999998 555 7


Q ss_pred             EeCCCc--EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec-CC--cEEEEEccCCCCCCCeeEeec
Q 020480          197 GSDDAQ--ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-DQ--YLLIWDLRTPSVSKPVQSVVA  271 (325)
Q Consensus       197 ~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~  271 (325)
                      ++.++.  |++||+.++.       ...+..|...+.+++|+|++ ..|++++. ++  .|.+||+.+++    ...+..
T Consensus       241 ~~~~g~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~----~~~l~~  308 (415)
T 2hqs_A          241 LSKTGSLNLYVMDLASGQ-------IRQVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGA----PQRITW  308 (415)
T ss_dssp             ECTTSSCEEEEEETTTCC-------EEECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSC----CEECCC
T ss_pred             EecCCCceEEEEECCCCC-------EEeCcCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCC----EEEEec
Confidence            776665  9999998752       34566788889999999998 46666664 55  57777887765    345555


Q ss_pred             cCCCeeEEEeCCCCCc--cCCC---CceEEeeecc
Q 020480          272 HQSEVGVSILNASFRL--SHED---TCTCTHRHSR  301 (325)
Q Consensus       272 h~~~v~~i~~~p~~~~--~~~~---d~~~~~~~~~  301 (325)
                      +...+.+++|+|+|+.  .++.   +..+.+|+..
T Consensus       309 ~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~  343 (415)
T 2hqs_A          309 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA  343 (415)
T ss_dssp             SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT
T ss_pred             CCCcccCeEECCCCCEEEEEECcCCceEEEEEECC
Confidence            7778999999999984  2222   3578888764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.62  E-value=1.3e-14  Score=122.55  Aligned_cols=207  Identities=12%  Similarity=0.112  Sum_probs=136.2

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.++++|+.+....- .+..+.  -++.+++|+|++.          .++++.      ...|.++++.-+        
T Consensus        20 ~~~~i~~~d~~~~~~~-~~~~~~--~~v~~~~~spdg~----------~l~~~~------~~~i~~~d~~~~--------   72 (297)
T 2ojh_A           20 MRSSIEIFNIRTRKMR-VVWQTP--ELFEAPNWSPDGK----------YLLLNS------EGLLYRLSLAGD--------   72 (297)
T ss_dssp             CCEEEEEEETTTTEEE-EEEEES--SCCEEEEECTTSS----------EEEEEE------TTEEEEEESSSC--------
T ss_pred             cceeEEEEeCCCCcee-eeccCC--cceEeeEECCCCC----------EEEEEc------CCeEEEEeCCCC--------
Confidence            4567888888775543 233343  3578999999875          455543      236777754210        


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEe--cCCeEEEEeC--CCCCCCCCCCCCCCCcE
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKT--VSAEVYVFDY--SKHPSKPPLDGACSPDL  172 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~--~dg~v~vwd~--~~~~~~~~~~~~~~~~~  172 (325)
                                       ++........+...+.+++|+|++ +.|++++  .++.+.||.+  ..           ....
T Consensus        73 -----------------~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~-----------~~~~  123 (297)
T 2ojh_A           73 -----------------PSPEKVDTGFATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTG-----------GTPR  123 (297)
T ss_dssp             -----------------CSCEECCCTTCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTC-----------CCCE
T ss_pred             -----------------CCceEeccccccccccceEECCCC-CEEEEEEeCCCCcceEEEEECCC-----------CceE
Confidence                             111111111234778999999998 6788777  3344555544  43           1233


Q ss_pred             EEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcE
Q 020480          173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL  252 (325)
Q Consensus       173 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i  252 (325)
                      .+..+ ..+..++|+|++..++++++.++.++||+++....     ....+..+...+.+++|+|++..+++++..++.+
T Consensus       124 ~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  197 (297)
T 2ojh_A          124 LMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG-----VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQM  197 (297)
T ss_dssp             ECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC-----CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             EeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCC-----cceEcccCCCccccceECCCCCEEEEEecCCCCc
Confidence            34433 34889999999984444888999999999754321     2345566778899999999985444455569999


Q ss_pred             EEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc
Q 020480          253 LIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL  287 (325)
Q Consensus       253 ~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~  287 (325)
                      ++|++.....  .+..+..|...+.+++|+|+|+.
T Consensus       198 ~i~~~~~~~~--~~~~~~~~~~~~~~~~~s~dg~~  230 (297)
T 2ojh_A          198 QIWRVRVDGS--SVERITDSAYGDWFPHPSPSGDK  230 (297)
T ss_dssp             EEEEEETTSS--CEEECCCCSEEEEEEEECTTSSE
T ss_pred             cEEEECCCCC--CcEEEecCCcccCCeEECCCCCE
Confidence            9999974332  36777777888999999999984

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.62  E-value=2.1e-14  Score=124.35  Aligned_cols=234  Identities=12%  Similarity=0.134  Sum_probs=145.7

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.++++|+.+...-...+......-....++|+|++.          .++++...    .+.+.++++...        
T Consensus        13 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~----------~l~~~~~~----~~~v~~~~~~~~--------   70 (343)
T 1ri6_A           13 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR----------YLYVGVRP----EFRVLAYRIAPD--------   70 (343)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSS----------EEEEEETT----TTEEEEEEECTT--------
T ss_pred             CCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCC----------EEEEeecC----CCeEEEEEecCC--------
Confidence            35678888775211111111122223456789999874          45555442    257888877421        


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCC-CCCcEEEe
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA-CSPDLRLR  175 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~  175 (325)
                                      .+.+.....+...+.+..++|+|++..+++++..++.|.+|++..        +. ......+.
T Consensus        71 ----------------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~--------~~~~~~~~~~~  126 (343)
T 1ri6_A           71 ----------------DGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLED--------GLPVGVVDVVE  126 (343)
T ss_dssp             ----------------TCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEET--------TEEEEEEEEEC
T ss_pred             ----------------CCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCC--------Ccccccccccc
Confidence                            234444455555558899999999954445555689999999842        11 12233333


Q ss_pred             cCCCceEEEEecCCCCCeEEEEe-CCCcEEEEeCCCCCCCCcccceE--eeec-CCccEEEEEeecCCCcEEEEEecCCc
Q 020480          176 GHSTEGYGLSWSKFKEGHLLSGS-DDAQICLWDINAAPKNKSLEAMQ--IFKV-HEGVVEDVAWHLRHEYLFGSVGDDQY  251 (325)
Q Consensus       176 ~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~--~~~~-~~~~v~~v~~~p~~~~~l~s~~~dg~  251 (325)
                      . ...+.+++|+|++. .+++++ .++.|++||+......   ....  .... ....+..++|+|++..+++++..++.
T Consensus       127 ~-~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~  201 (343)
T 1ri6_A          127 G-LDGCHSANISPDNR-TLWVPALKQDRICLFTVSDDGHL---VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS  201 (343)
T ss_dssp             C-CTTBCCCEECTTSS-EEEEEEGGGTEEEEEEECTTSCE---EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             C-CCCceEEEECCCCC-EEEEecCCCCEEEEEEecCCCce---eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCE
Confidence            3 34688999999998 566665 8999999999862211   1111  2222 34578899999998656666668999


Q ss_pred             EEEEEccCCCC-CCCeeEee----cc--CCCeeEEEeCCCCCc---cCCCCceEEeeecc
Q 020480          252 LLIWDLRTPSV-SKPVQSVV----AH--QSEVGVSILNASFRL---SHEDTCTCTHRHSR  301 (325)
Q Consensus       252 i~iwd~~~~~~-~~~~~~~~----~h--~~~v~~i~~~p~~~~---~~~~d~~~~~~~~~  301 (325)
                      |++||+..... ........    ++  ...+.+++|+|+|+.   +...++.+.+|++.
T Consensus       202 i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          202 VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            99999964221 11122222    11  235668999999973   55678899999876

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.58  E-value=7.6e-13  Score=115.20  Aligned_cols=164  Identities=16%  Similarity=0.139  Sum_probs=111.9

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-CCceEEEEecCCCCCeEEEEeCCCcEEE
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-STEGYGLSWSKFKEGHLLSGSDDAQICL  205 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s~dg~i~i  205 (325)
                      .+.+++|+|++. +++++..++.|.+|++...       +.......+..+ ...+..++|+|++..+++++..++.|.+
T Consensus       142 ~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~-------g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v  213 (347)
T 3hfq_A          142 HIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDA-------GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIAS  213 (347)
T ss_dssp             CEEEEEECTTSC-EEEEETTTTEEEEEEECTT-------SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CceEEEECCCCc-EEEEeCCCCEEEEEEECCC-------CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEE
Confidence            488899999995 8888778899999999730       222222222222 2367889999999855555678899999


Q ss_pred             EeCCCCCCCCcccceEeeecCC------ccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480          206 WDINAAPKNKSLEAMQIFKVHE------GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS  279 (325)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~------~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i  279 (325)
                      |++.....  .+..+..+....      ..+..++|+|++..+++++..++.|.+||+........+..+..+...+.++
T Consensus       214 ~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~  291 (347)
T 3hfq_A          214 LKYDTQTG--AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDF  291 (347)
T ss_dssp             EEEETTTT--EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEE
T ss_pred             EEecCCCC--ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeE
Confidence            99875211  111222222222      4588999999986566777789999999997432212345555566678999


Q ss_pred             EeCCCCCc---cCCCCceEEeeec
Q 020480          280 ILNASFRL---SHEDTCTCTHRHS  300 (325)
Q Consensus       280 ~~~p~~~~---~~~~d~~~~~~~~  300 (325)
                      +|+|+|+.   +...++.+.+|++
T Consensus       292 ~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          292 DLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EECCCCCEEEEEEcCCCcEEEEEE
Confidence            99999983   3345588888854

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.58  E-value=2.9e-13  Score=117.84  Aligned_cols=199  Identities=5%  Similarity=-0.013  Sum_probs=135.9

Q ss_pred             EEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEE
Q 020480           64 QKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIAT  143 (325)
Q Consensus        64 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~  143 (325)
                      +++++|+.... ....|.++.+..                        ..+++.......+...+..++|+|++ +++++
T Consensus         3 ~~~~vg~y~~~-~~~~i~v~~~d~------------------------~tg~~~~~~~~~~~~~p~~~a~spdg-~l~~~   56 (347)
T 3hfq_A            3 ERILFGTYTKK-TSQGIYQGTLDT------------------------TAKTLTNDGLLAATQNPTYLALSAKD-CLYSV   56 (347)
T ss_dssp             EEEEEEECCSS-SCCEEEEEEEET------------------------TTTEEEEEEEEEECSCCCCEEECTTC-EEEEE
T ss_pred             cEEEEEeccCC-CCCCEEEEEEcC------------------------CCCeEEEeeeeeccCCcceEEEccCC-eEEEE
Confidence            56788887543 345788888862                        23456665666777888899999998 45555


Q ss_pred             Eec--CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe-CCCcEEEEeCCCCCCCCcccce
Q 020480          144 KTV--SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-DDAQICLWDINAAPKNKSLEAM  220 (325)
Q Consensus       144 g~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~  220 (325)
                      +..  ++.|.+|++..        +....+..+..+...+..++|+|++. +|++++ .++.|.+|++......   ..+
T Consensus        57 ~~~~~~~~v~~~~~~~--------g~~~~~~~~~~~~~~p~~~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~---~~~  124 (347)
T 3hfq_A           57 DKEDDEGGIAAWQIDG--------QTAHKLNTVVAPGTPPAYVAVDEARQ-LVYSANYHKGTAEVMKIAADGAL---TLT  124 (347)
T ss_dssp             EEETTEEEEEEEEEET--------TEEEEEEEEEEESCCCSEEEEETTTT-EEEEEETTTTEEEEEEECTTSCE---EEE
T ss_pred             EecCCCceEEEEEecC--------CcEEEeeeeecCCCCCEEEEECCCCC-EEEEEeCCCCEEEEEEeCCCCCe---eec
Confidence            433  68999999965        33333444455777889999999998 677666 7899999999643221   222


Q ss_pred             Eeeec---------CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeec-cCCCeeEEEeCCCCC-c--
Q 020480          221 QIFKV---------HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-HQSEVGVSILNASFR-L--  287 (325)
Q Consensus       221 ~~~~~---------~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~i~~~p~~~-~--  287 (325)
                      ..+..         +...+.+++|+|++. ++++...++.|++||+........+..+.. ....+..++|+|+|+ +  
T Consensus       125 ~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v  203 (347)
T 3hfq_A          125 DTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFL  203 (347)
T ss_dssp             EEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             ceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEE
Confidence            22221         123488899999986 888888899999999983322111222222 233678899999998 3  


Q ss_pred             cCCCCceEEeeecc
Q 020480          288 SHEDTCTCTHRHSR  301 (325)
Q Consensus       288 ~~~~d~~~~~~~~~  301 (325)
                      +...++.+.+|++.
T Consensus       204 ~~~~~~~v~v~~~~  217 (347)
T 3hfq_A          204 AGELSSQIASLKYD  217 (347)
T ss_dssp             EETTTTEEEEEEEE
T ss_pred             EeCCCCEEEEEEec
Confidence            45667888888765

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.57  E-value=8.8e-14  Score=120.34  Aligned_cols=176  Identities=7%  Similarity=0.052  Sum_probs=117.5

Q ss_pred             CceEEEEEeccCCCeeEEEecCCCCcEEEEEecC-CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCC
Q 020480          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVS-AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG  192 (325)
Q Consensus       114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~  192 (325)
                      +.++....+.+...+.+++|+|++ +++++++.+ +.|.+|++...      .+....+..+..+. .+..++|+|++..
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~s~dg~~   97 (343)
T 1ri6_A           26 GALTLTQVVDVPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPD------DGALTFAAESALPG-SLTHISTDHQGQF   97 (343)
T ss_dssp             SCEEEEEEEECSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTT------TCCEEEEEEEECSS-CCSEEEECTTSSE
T ss_pred             CcEEEeeeEecCCCCceEEECCCC-CEEEEeecCCCeEEEEEecCC------CCceeeccccccCC-CCcEEEEcCCCCE
Confidence            345556667888899999999998 566666665 99999998720      02223334444444 7889999999984


Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCee--Eee
Q 020480          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ--SVV  270 (325)
Q Consensus       193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~  270 (325)
                      +++++..++.|.+||+..+..   ......+.. ...+.+++|+|++..+++++..++.|++||+........+.  ...
T Consensus        98 l~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~  173 (343)
T 1ri6_A           98 VFVGSYNAGNVSVTRLEDGLP---VGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT  173 (343)
T ss_dssp             EEEEETTTTEEEEEEEETTEE---EEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE
T ss_pred             EEEEecCCCeEEEEECCCCcc---ccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc
Confidence            334445589999999952211   123333333 34588999999985444444489999999998733211111  222


Q ss_pred             c-cCCCeeEEEeCCCCCc---cCCCCceEEeeecc
Q 020480          271 A-HQSEVGVSILNASFRL---SHEDTCTCTHRHSR  301 (325)
Q Consensus       271 ~-h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~~  301 (325)
                      . ....+.+++|+|+|+.   ++..++.+.+|++.
T Consensus       174 ~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~  208 (343)
T 1ri6_A          174 TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK  208 (343)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred             cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            2 3457889999999983   44578899999874

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.57  E-value=2.6e-13  Score=114.52  Aligned_cols=162  Identities=9%  Similarity=-0.004  Sum_probs=114.7

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-CCceEEEEecCCCCCeEEEEe
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-STEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      ....|.+.|.+++|+|++ ++|++++ ++.|++||+...         .........+ ...+.+++|+|++. .|++++
T Consensus        36 ~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~---------~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~  103 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGD---------PSPEKVDTGFATICNNDHGISPDGA-LYAISD  103 (297)
T ss_dssp             EEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSC---------CSCEECCCTTCCCBCSCCEECTTSS-EEEEEE
T ss_pred             eeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCC---------CCceEeccccccccccceEECCCCC-EEEEEE
Confidence            456689999999999999 6788765 789999998650         1122223344 36788999999998 788888


Q ss_pred             --CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCe
Q 020480          199 --DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (325)
Q Consensus       199 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  276 (325)
                        .++...||.+.....     ....+..+. .+..++|+|++..++++++.++.++||++.....  ....+..+...+
T Consensus       104 ~~~~~~~~l~~~~~~~~-----~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~  175 (297)
T 2ojh_A          104 KVEFGKSAIYLLPSTGG-----TPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG--VETRLTHGEGRN  175 (297)
T ss_dssp             CTTTSSCEEEEEETTCC-----CCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC--CEEECCCSSSCE
T ss_pred             eCCCCcceEEEEECCCC-----ceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCC--cceEcccCCCcc
Confidence              335566665543211     123333333 4888999999865555888999999999764332  356667788899


Q ss_pred             eEEEeCCCCCc---cCCCCceEEeeecc
Q 020480          277 GVSILNASFRL---SHEDTCTCTHRHSR  301 (325)
Q Consensus       277 ~~i~~~p~~~~---~~~~d~~~~~~~~~  301 (325)
                      .+++|+|+|+.   .+..++.+++|.+.
T Consensus       176 ~~~~~s~dg~~l~~~~~~~~~~~i~~~~  203 (297)
T 2ojh_A          176 DGPDYSPDGRWIYFNSSRTGQMQIWRVR  203 (297)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ccceECCCCCEEEEEecCCCCccEEEEC
Confidence            99999999983   34457888888764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.56  E-value=3.8e-13  Score=116.09  Aligned_cols=227  Identities=11%  Similarity=0.059  Sum_probs=144.9

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.++++|+..+..+...+... .. +. .++|.|++.          .+++....    .+.|.+++..          
T Consensus        18 ~~~~v~~~d~~~~~~~~~~~~~-~~-~~-~~~~s~dg~----------~l~~~~~~----~~~i~~~d~~----------   70 (331)
T 3u4y_A           18 HLRRISFFSTDTLEILNQITLG-YD-FV-DTAITSDCS----------NVVVTSDF----CQTLVQIETQ----------   70 (331)
T ss_dssp             GGTEEEEEETTTCCEEEEEECC-CC-EE-EEEECSSSC----------EEEEEEST----TCEEEEEECS----------
T ss_pred             CCCeEEEEeCcccceeeeEEcc-CC-cc-eEEEcCCCC----------EEEEEeCC----CCeEEEEECC----------
Confidence            3567888888776554433322 22 34 899999874          34444332    2366666442          


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCC---eEEEEeCCCCCCCCCCCCCCCCcEE
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSA---EVYVFDYSKHPSKPPLDGACSPDLR  173 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg---~v~vwd~~~~~~~~~~~~~~~~~~~  173 (325)
                                      .+++.......+..+..+++|+|++ ++++++..++   .|.+||+..          ...+..
T Consensus        71 ----------------~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~----------~~~~~~  123 (331)
T 3u4y_A           71 ----------------LEPPKVVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLK----------NKFIST  123 (331)
T ss_dssp             ----------------SSSCEEEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTT----------TEEEEE
T ss_pred             ----------------CCceeEEecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCC----------CCeEEE
Confidence                            1222122223345555559999999 5666555553   999999976          233444


Q ss_pred             EecCCCceEEEEecCCCCCeEEEEeCCCc-EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcE
Q 020480          174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQ-ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL  252 (325)
Q Consensus       174 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i  252 (325)
                      +.. .....+++|+|++..+++++..++. |.+|++..........  ............++|+|++..+++++..++.|
T Consensus       124 ~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  200 (331)
T 3u4y_A          124 IPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG--QEFISGGTRPFNITFTPDGNFAFVANLIGNSI  200 (331)
T ss_dssp             EEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE--EEEECSSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             EEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC--CccccCCCCccceEECCCCCEEEEEeCCCCeE
Confidence            443 4456899999999856666677788 9999998543211100  11223445688999999986567777789999


Q ss_pred             EEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc---cCCCCceEEeeecc
Q 020480          253 LIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL---SHEDTCTCTHRHSR  301 (325)
Q Consensus       253 ~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~~  301 (325)
                      ++||+.+++....+..+. ....+..++|+|+|+.   +...++.+.+|+..
T Consensus       201 ~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~  251 (331)
T 3u4y_A          201 GILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQL  251 (331)
T ss_dssp             EEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred             EEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence            999998877311144554 3467789999999993   44457778888764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.51  E-value=2.1e-12  Score=119.39  Aligned_cols=182  Identities=10%  Similarity=0.032  Sum_probs=129.5

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~i  205 (325)
                      ..+..+.++|++..++++...++.|.+||+..        .....+..+ .+...+.++.|+|++..+++++..+++|.+
T Consensus       280 ~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~--------~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v  350 (543)
T 1nir_A          280 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKD--------IDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAV  350 (543)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEECTT--------SSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEE
T ss_pred             CceEEEEECCCCCEEEEEECCCCeEEEEEecC--------CCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEE
Confidence            37889999998878889999999999999986        211112233 466778899999999944556667899999


Q ss_pred             EeCCCCCCCCcccceEeeec----CCccEEEEEeecCCCcEEEEEe-cCCcEEEEEccCCCC----CCCeeEeeccCCCe
Q 020480          206 WDINAAPKNKSLEAMQIFKV----HEGVVEDVAWHLRHEYLFGSVG-DDQYLLIWDLRTPSV----SKPVQSVVAHQSEV  276 (325)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~----~~~~v~~v~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v  276 (325)
                      ||+.++      .++..+..    |......+ ++|++..+++++. .|++|.+||+.+...    .+.+.++..|...+
T Consensus       351 ~D~~tg------~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~  423 (543)
T 1nir_A          351 IDSKDR------RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS  423 (543)
T ss_dssp             EETTTT------EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC
T ss_pred             EECCCC------eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCc
Confidence            999987      33444442    54433333 4787556788876 689999999987221    23588889898889


Q ss_pred             eEEEeCCCCCc--cCC-------CCceEEeeecceeeecc--------------CeeEEEeecCCCcccc
Q 020480          277 GVSILNASFRL--SHE-------DTCTCTHRHSRYLLYKF--------------PFFVLVFPLFPSLQHY  323 (325)
Q Consensus       277 ~~i~~~p~~~~--~~~-------~d~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~  323 (325)
                      ..|+|+|+|+.  +++       .+.++.+|++....-.|              +.....+.+.|+.+..
T Consensus       424 ~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~  493 (543)
T 1nir_A          424 LFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEV  493 (543)
T ss_dssp             CCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEE
T ss_pred             eEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEE
Confidence            99999999985  333       26799999986543222              2345566666666543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.51  E-value=9.3e-13  Score=121.83  Aligned_cols=154  Identities=16%  Similarity=0.127  Sum_probs=118.9

Q ss_pred             eeEEEecCCCCcEEEEEecCCeEEEEeC--CCCCCCCCCCCCCCCcEEEecCCCceEEEEecC----CCCCeEEEEe-CC
Q 020480          128 VNRARYMPQNPFLIATKTVSAEVYVFDY--SKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK----FKEGHLLSGS-DD  200 (325)
Q Consensus       128 v~~v~~~~~~~~~la~g~~dg~v~vwd~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p----~~~~~l~s~s-~d  200 (325)
                      +..++|+|++ +++++++.++.|++||+  .+          ...+.++. +...+..++|+|    ++. ++++++ .+
T Consensus       181 ~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t----------~~~~~~i~-~g~~p~~va~sp~~~~dg~-~l~v~~~~~  247 (543)
T 1nir_A          181 VHISRMSASG-RYLLVIGRDARIDMIDLWAKE----------PTKVAEIK-IGIEARSVESSKFKGYEDR-YTIAGAYWP  247 (543)
T ss_dssp             EEEEEECTTS-CEEEEEETTSEEEEEETTSSS----------CEEEEEEE-CCSEEEEEEECCSTTCTTT-EEEEEEEES
T ss_pred             cceEEECCCC-CEEEEECCCCeEEEEECcCCC----------CcEEEEEe-cCCCcceEEeCCCcCCCCC-EEEEEEccC
Confidence            8899999999 68888899999999999  44          33455565 455689999999    998 677776 58


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeec----------C-CccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKV----------H-EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV  269 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~----------~-~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  269 (325)
                      ++|.+||..+.      .++..+..          | ...+.++.++|++..++++...++.|.+||+.+.+.. .+..+
T Consensus       248 ~~v~v~D~~t~------~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l-~~~~i  320 (543)
T 1nir_A          248 PQFAIMDGETL------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL-TVTSI  320 (543)
T ss_dssp             SEEEEEETTTC------CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC-EEEEE
T ss_pred             CeEEEEecccc------ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc-eeEEe
Confidence            99999998876      33444432          2 2378999999988888889999999999999887641 11233


Q ss_pred             eccCCCeeEEEeCCCCCc---cCCCCceEEeeecce
Q 020480          270 VAHQSEVGVSILNASFRL---SHEDTCTCTHRHSRY  302 (325)
Q Consensus       270 ~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~~~  302 (325)
                       .+...+.+++|+|+|++   ++..++++.+||...
T Consensus       321 -~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t  355 (543)
T 1nir_A          321 -GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD  355 (543)
T ss_dssp             -ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             -ccCcCccCceECCCCCEEEEEecCCCeEEEEECCC
Confidence             35677899999999984   445678999998653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.49  E-value=2e-11  Score=106.06  Aligned_cols=152  Identities=11%  Similarity=0.119  Sum_probs=113.0

Q ss_pred             eeEEEecCCCCcEEEEE-ecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEE
Q 020480          128 VNRARYMPQNPFLIATK-TVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW  206 (325)
Q Consensus       128 v~~v~~~~~~~~~la~g-~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iw  206 (325)
                      +.++.|+|++..+++++ +.++.|.+||...          .+.+..+..+...+.+++|+|++. .+++++.++.|.+|
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~----------~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~i~~~  211 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGN----------IKLKTAIQNTGKMSTGLALDSEGK-RLYTTNADGELITI  211 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTT----------TEEEEEECCCCTTCCCCEEETTTT-EEEEECTTSEEEEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCC----------CceEEEecCCCCccceEEECCCCC-EEEEEcCCCeEEEE
Confidence            67899999985444444 3588999999976          333455554566688999999998 78888899999999


Q ss_pred             eCCCCCCCCcccceEeeec----CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeC
Q 020480          207 DINAAPKNKSLEAMQIFKV----HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN  282 (325)
Q Consensus       207 d~~~~~~~~~~~~~~~~~~----~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~  282 (325)
                      |+.++.      ....+..    +...+..++|+|++..++++...++.|.+||+.+++.   +..+....  ..+++|+
T Consensus       212 d~~~~~------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~---~~~~~~~~--~~~~~~s  280 (353)
T 3vgz_A          212 DTADNK------ILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI---LAKVAAPE--SLAVLFN  280 (353)
T ss_dssp             ETTTTE------EEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE---EEEEECSS--CCCEEEE
T ss_pred             ECCCCe------EEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE---EEEEEcCC--CceEEEC
Confidence            998763      3333332    4556888999999865666666679999999988773   55554322  3569999


Q ss_pred             CCCC-c--cCCCCceEEeeecc
Q 020480          283 ASFR-L--SHEDTCTCTHRHSR  301 (325)
Q Consensus       283 p~~~-~--~~~~d~~~~~~~~~  301 (325)
                      |+|. +  +...++.+.+|+..
T Consensus       281 ~dg~~l~v~~~~~~~v~~~d~~  302 (353)
T 3vgz_A          281 PARNEAYVTHRQAGKVSVIDAK  302 (353)
T ss_dssp             TTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCCEEEEEECCCCeEEEEECC
Confidence            9998 3  45568899999864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.49  E-value=5.8e-14  Score=134.70  Aligned_cols=158  Identities=13%  Similarity=0.064  Sum_probs=108.2

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC----------------ceEEEE
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST----------------EGYGLS  185 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~----------------~v~~l~  185 (325)
                      ..|...+..++|+|+| +.||.++ ++.|++|++..        +..  ......+..                .+.++.
T Consensus       148 ~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~--------g~~--~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~  215 (741)
T 2ecf_A          148 THGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLAS--------GRQ--MQLTADGSTTIGNGIAEFVADEEMDRHTGYW  215 (741)
T ss_dssp             CCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTT--------TEE--EECCCCCCSSEEESCCCHHHHHHSCCCCSEE
T ss_pred             ccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCC--------CCE--EEeccCCccceeccccceeeeeccccccceE
Confidence            3466789999999999 6788766 56999999976        111  111112222                147899


Q ss_pred             ecCCCCCeEEEEeCCC---------------------------------cEEEEeCCC-CCCCCcccceEeeecCCccEE
Q 020480          186 WSKFKEGHLLSGSDDA---------------------------------QICLWDINA-APKNKSLEAMQIFKVHEGVVE  231 (325)
Q Consensus       186 ~~p~~~~~l~s~s~dg---------------------------------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~  231 (325)
                      |+|++. .|++++.|+                                 .|++||+.+ +..    ..+.....|...+.
T Consensus       216 ~SpDg~-~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~----~~~~~~~~~~~~~~  290 (741)
T 2ecf_A          216 WAPDDS-AIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT----QWIDLGKEQDIYLA  290 (741)
T ss_dssp             ECTTSS-CEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC----EEECCCSCSSEEEE
T ss_pred             ECCCCC-EEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce----EEecCCCCcceEEE
Confidence            999999 688877665                                 788999887 532    11111114777899


Q ss_pred             EEEeecCCCcEEEEEe-----cCCcEEEEEccCCCCCCCeeEeeccCC----CeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480          232 DVAWHLRHEYLFGSVG-----DDQYLLIWDLRTPSVSKPVQSVVAHQS----EVGVSILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       232 ~v~~~p~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~h~~----~v~~i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                      .++| |++. .|++++     .+..|++||+.+++.   ...+..+..    .+.+++|+|+|++  +++.++..++|.+
T Consensus       291 ~~~~-pDg~-~l~~~~~~~~~~~~~i~~~d~~~g~~---~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  365 (741)
T 2ecf_A          291 RVNW-RDPQ-HLSFQRQSRDQKKLDLVEVTLASNQQ---RVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRI  365 (741)
T ss_dssp             EEEE-EETT-EEEEEEEETTSSEEEEEEEETTTCCE---EEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEE
T ss_pred             EEEe-CCCC-EEEEEEecccCCeEEEEEEECCCCce---EEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEE
Confidence            9999 9985 555444     357799999998873   444444433    4578999999985  5667777777754


Q ss_pred             c
Q 020480          301 R  301 (325)
Q Consensus       301 ~  301 (325)
                      .
T Consensus       366 ~  366 (741)
T 2ecf_A          366 D  366 (741)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.49  E-value=8.9e-12  Score=108.26  Aligned_cols=161  Identities=12%  Similarity=0.019  Sum_probs=117.9

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC---------ceEEEEecCCC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST---------EGYGLSWSKFK  190 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~~p~~  190 (325)
                      ..+.....+..++|+|++..+++++..++.|.+||..+          .+.+..+..+..         .+.+++|+|++
T Consensus        83 ~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  152 (353)
T 3vgz_A           83 QAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT----------GEVKGRLVLDDRKRTEEVRPLQPRELVADDAT  152 (353)
T ss_dssp             EEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTT----------CCEEEEEESCCCCCCSSCCCCEEEEEEEETTT
T ss_pred             EEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCC----------CeeEEEEecCCCccccccCCCCCceEEECCCC
Confidence            34445566889999999955677777789999999976          233444544332         26889999999


Q ss_pred             CCeEEEEe--CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeE
Q 020480          191 EGHLLSGS--DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS  268 (325)
Q Consensus       191 ~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  268 (325)
                      . .+++++  .++.|.+||..++      .....+..+...+..++|+|++ ..+++++.++.|.+||+.+++.   +..
T Consensus       153 ~-~l~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~---~~~  221 (353)
T 3vgz_A          153 N-TVYISGIGKESVIWVVDGGNI------KLKTAIQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKI---LSR  221 (353)
T ss_dssp             T-EEEEEEESSSCEEEEEETTTT------EEEEEECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEE---EEE
T ss_pred             C-EEEEEecCCCceEEEEcCCCC------ceEEEecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeE---EEE
Confidence            8 455554  5789999999876      3455555455568889999998 5777888899999999998773   444


Q ss_pred             eec----cCCCeeEEEeCCCCCc---cCCCCceEEeeecc
Q 020480          269 VVA----HQSEVGVSILNASFRL---SHEDTCTCTHRHSR  301 (325)
Q Consensus       269 ~~~----h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~~  301 (325)
                      +..    +...+.+++|+|+|..   +...++.+.+|+..
T Consensus       222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  261 (353)
T 3vgz_A          222 KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR  261 (353)
T ss_dssp             EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT
T ss_pred             EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            432    4556888999999983   44456888888764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.48  E-value=3.9e-13  Score=128.57  Aligned_cols=153  Identities=8%  Similarity=-0.005  Sum_probs=106.4

Q ss_pred             CeeEEEecCCCCcEEEEEecC---------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480          127 EVNRARYMPQNPFLIATKTVS---------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~d---------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  197 (325)
                      .|.+++|+|+| +.|++++.+         +.|++||+..        +....+....+|...+..++|+|+|. .|+++
T Consensus        62 ~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~--------~~~~~l~~~~~~~~~~~~~~~SPdG~-~la~~  131 (723)
T 1xfd_A           62 RAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPH--------GDPQSLDPPEVSNAKLQYAGWGPKGQ-QLIFI  131 (723)
T ss_dssp             TCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSS--------CCCEECCCTTCCSCCCSBCCBCSSTT-CEEEE
T ss_pred             ccceEEECCCC-CEEEEEecCccceeecceeeEEEEECCC--------CceEeccCCccccccccccEECCCCC-EEEEE
Confidence            49999999999 688887664         7889999987        22211212224555688999999999 78887


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceEeeecCCc------------------cEEEEEeecCCCcEEEEEecCC---------
Q 020480          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEG------------------VVEDVAWHLRHEYLFGSVGDDQ---------  250 (325)
Q Consensus       198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------------~v~~v~~~p~~~~~l~s~~~dg---------  250 (325)
                      +. +.|++||+.++..      ......+..                  .+.+++|+|++ ..|++++.|+         
T Consensus       132 ~~-~~i~~~~~~~g~~------~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~  203 (723)
T 1xfd_A          132 FE-NNIYYCAHVGKQA------IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELP  203 (723)
T ss_dssp             ET-TEEEEESSSSSCC------EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEEC
T ss_pred             EC-CeEEEEECCCCce------EEEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEee
Confidence            75 7999999987632      222222222                  23789999998 5777776543         


Q ss_pred             -------------------------cEEEEEccCCCCCCCeeEeecc------CCCeeEEEeCCCCCcc------CCCCc
Q 020480          251 -------------------------YLLIWDLRTPSVSKPVQSVVAH------QSEVGVSILNASFRLS------HEDTC  293 (325)
Q Consensus       251 -------------------------~i~iwd~~~~~~~~~~~~~~~h------~~~v~~i~~~p~~~~~------~~~d~  293 (325)
                                               .|++||+.+++.   ...+..+      ...+.+++|+|+|++.      +..+.
T Consensus       204 ~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~---~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~  280 (723)
T 1xfd_A          204 TYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH---DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVS  280 (723)
T ss_dssp             CCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC---CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEE
T ss_pred             ccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce---eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeE
Confidence                                     799999988763   3444433      5678999999999852      22345


Q ss_pred             eEEeeec
Q 020480          294 TCTHRHS  300 (325)
Q Consensus       294 ~~~~~~~  300 (325)
                      .+.+|+.
T Consensus       281 ~i~~~d~  287 (723)
T 1xfd_A          281 ILTLCDA  287 (723)
T ss_dssp             EEEEEET
T ss_pred             EEEEEeC
Confidence            6777765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.48  E-value=4e-13  Score=128.44  Aligned_cols=211  Identities=13%  Similarity=0.123  Sum_probs=134.9

Q ss_pred             HHHHhhhHhcChhHHHHhhhcCCC-CCceEEEEeeCCCCCCCCCcceEEEEEEecCCCC----CCCeEEEEEEECCCCCC
Q 020480           18 NEEYKIWKKNTPFLYDLVITHALE-WPSLTVEWLPDREEPPGKDYSVQKMILGTHTSEN----EPNYLMLAQVQLPLDDS   92 (325)
Q Consensus        18 ~~~~~iw~~~~~~~y~~~~~~~~~-~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~i~~~~~~~~~~   92 (325)
                      +.++++|+..+......+..+... ..+.+++|+|++.          .++++......    ....+.++++.      
T Consensus        36 dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~----------~l~~~~~~~~~~~~~~~~~i~~~d~~------   99 (723)
T 1xfd_A           36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDRE----------YALFSYNVEPIYQHSYTGYYVLSKIP------   99 (723)
T ss_dssp             SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSS----------EEEEEESCCCCSSSCCCSEEEEEESS------
T ss_pred             CCCEEEEECCCCcEEEEeccccccccccceEEECCCCC----------EEEEEecCccceeecceeeEEEEECC------
Confidence            447899998887655455444321 2478999999985          45555543221    12567777542      


Q ss_pred             CcccCCCCcccCCCCCCCCCCCceEEEEE-eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCc
Q 020480           93 ENDARHYDDDRSDFGGFGCANGKVQIIQQ-INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPD  171 (325)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~  171 (325)
                                          .++...+.. ..|...+..++|+|+| +.||.++. +.|++|++..        +  ...
T Consensus       100 --------------------~~~~~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~--------g--~~~  147 (723)
T 1xfd_A          100 --------------------HGDPQSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVG--------K--QAI  147 (723)
T ss_dssp             --------------------SCCCEECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSS--------S--CCE
T ss_pred             --------------------CCceEeccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCC--------C--ceE
Confidence                                112111111 1244558899999999 67888765 7999999876        2  222


Q ss_pred             EEEecCCCc------------------eEEEEecCCCCCeEEEEeCCC--------------------------------
Q 020480          172 LRLRGHSTE------------------GYGLSWSKFKEGHLLSGSDDA--------------------------------  201 (325)
Q Consensus       172 ~~~~~h~~~------------------v~~l~~~p~~~~~l~s~s~dg--------------------------------  201 (325)
                      .....+...                  +.+++|+|++. .|++++.++                                
T Consensus       148 ~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  226 (723)
T 1xfd_A          148 RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENP  226 (723)
T ss_dssp             EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCC
T ss_pred             EEecCCCCCceECcccceeEEEEeccCcceEEECCCCC-EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCC
Confidence            223333322                  37899999999 788876543                                


Q ss_pred             --cEEEEeCCCCCCCCcccceEeeec------CCccEEEEEeecCCCcEEEEEec----CCcEEEEEccCCCCCCCeeEe
Q 020480          202 --QICLWDINAAPKNKSLEAMQIFKV------HEGVVEDVAWHLRHEYLFGSVGD----DQYLLIWDLRTPSVSKPVQSV  269 (325)
Q Consensus       202 --~i~iwd~~~~~~~~~~~~~~~~~~------~~~~v~~v~~~p~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~  269 (325)
                        .|++||+.++..      ...+..      +...+..++|+|++ .++++.+.    +..|++||+.+++.   ...+
T Consensus       227 ~~~l~~~d~~~~~~------~~~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~g~~---~~~~  296 (723)
T 1xfd_A          227 SISLHVIGLNGPTH------DLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVC---TKKH  296 (723)
T ss_dssp             EEEEEEEESSSSCC------CEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCE---EEEE
T ss_pred             eeEEEEEECCCCce------eEEeeCCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCCCcc---eEEE
Confidence              799999987642      223333      36679999999998 46666543    35799999988773   3333


Q ss_pred             e-ccCCCee----EEEeCCCCCc
Q 020480          270 V-AHQSEVG----VSILNASFRL  287 (325)
Q Consensus       270 ~-~h~~~v~----~i~~~p~~~~  287 (325)
                      . .+...+.    +++|+|+|+.
T Consensus       297 ~~~~~~~~~~~~~~~~~spdg~~  319 (723)
T 1xfd_A          297 EDESEAWLHRQNEEPVFSKDGRK  319 (723)
T ss_dssp             EEECSSCCCCCCCCCEECTTSCS
T ss_pred             EeccCCEEeccCCCceEcCCCCe
Confidence            3 2344443    7899999983

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.46  E-value=7.1e-12  Score=108.06  Aligned_cols=159  Identities=4%  Similarity=-0.068  Sum_probs=112.9

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCC-cEEEecCCCceEEEEecCCCCCeEEEEeCCC-
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSP-DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA-  201 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg-  201 (325)
                      +...+ .++|+|++..+++++..++.|.+||...          ... ...+..+..+..+++|+|++. +++++..++ 
T Consensus        39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~----------~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~  106 (331)
T 3u4y_A           39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL----------EPPKVVAIQEGQSSMADVDITPDDQ-FAVTVTGLNH  106 (331)
T ss_dssp             CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSS----------SSCEEEEEEECSSCCCCEEECTTSS-EEEECCCSSS
T ss_pred             cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC----------CceeEEecccCCCCccceEECCCCC-EEEEecCCCC
Confidence            34555 9999999954566666689999999986          233 455666666665599999998 677555553 


Q ss_pred             --cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc-EEEEEccCCCCCCCe-eEeeccCCCee
Q 020480          202 --QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY-LLIWDLRTPSVSKPV-QSVVAHQSEVG  277 (325)
Q Consensus       202 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~-~~~~~h~~~v~  277 (325)
                        .|.+||+..+      ..+..+.. .....+++|+|++..+++++..++. |.+|++......... .........+.
T Consensus       107 ~~~i~v~d~~~~------~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~  179 (331)
T 3u4y_A          107 PFNMQSYSFLKN------KFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPF  179 (331)
T ss_dssp             SCEEEEEETTTT------EEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEE
T ss_pred             cccEEEEECCCC------CeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCcc
Confidence              8999999876      33444443 4457899999998667777777788 999999865421000 11123345689


Q ss_pred             EEEeCCCCC-c--cCCCCceEEeeecc
Q 020480          278 VSILNASFR-L--SHEDTCTCTHRHSR  301 (325)
Q Consensus       278 ~i~~~p~~~-~--~~~~d~~~~~~~~~  301 (325)
                      +++|+|+|+ +  ++..++.+.+|+..
T Consensus       180 ~~~~spdg~~l~v~~~~~~~v~v~d~~  206 (331)
T 3u4y_A          180 NITFTPDGNFAFVANLIGNSIGILETQ  206 (331)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEECC
Confidence            999999998 3  55568899999865

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.46  E-value=2.8e-12  Score=127.66  Aligned_cols=154  Identities=9%  Similarity=0.068  Sum_probs=120.5

Q ss_pred             eccCC-CeeEEEecCCCCcEEEEEecCCeEE-EEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          122 INHDG-EVNRARYMPQNPFLIATKTVSAEVY-VFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       122 ~~h~~-~v~~v~~~~~~~~~la~g~~dg~v~-vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ..|.+ .+..++|+ ++ ..|+.++.++.+. +|++..        +   ....+.+|...+..++|+|++. .|++++.
T Consensus       333 ~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~--------~---~~~~l~~~~~~~~~~~~SpDG~-~la~~~~  398 (1045)
T 1k32_A          333 PEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRT--------G---KAEKFEENLGNVFAMGVDRNGK-FAVVAND  398 (1045)
T ss_dssp             SCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTT--------C---CEEECCCCCCSEEEEEECTTSS-EEEEEET
T ss_pred             cCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCC--------C---CceEecCCccceeeeEECCCCC-EEEEECC
Confidence            45666 88999999 87 6788888888888 899876        2   2334457888999999999999 8999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC----------cEEEEEccCCCCCCCeeEe
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ----------YLLIWDLRTPSVSKPVQSV  269 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg----------~i~iwd~~~~~~~~~~~~~  269 (325)
                      ++.|++||+.++.      .......|...+.+++|+|++ ..|++++.++          .|++||+.+++    +..+
T Consensus       399 ~~~v~~~d~~tg~------~~~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~----~~~l  467 (1045)
T 1k32_A          399 RFEIMTVDLETGK------PTVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----IFAA  467 (1045)
T ss_dssp             TSEEEEEETTTCC------EEEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTE----EEEC
T ss_pred             CCeEEEEECCCCc------eEEeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCc----EEEe
Confidence            9999999998763      344455788889999999998 5666666544          89999998765    5666


Q ss_pred             eccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480          270 VAHQSEVGVSILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       270 ~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                      ..|...+.+++|+|+|+.  .++.+.....|+.
T Consensus       468 ~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          468 TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             SCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             eCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence            778888999999999983  4555555555554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.46  E-value=1.5e-12  Score=124.86  Aligned_cols=153  Identities=8%  Similarity=-0.024  Sum_probs=107.4

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~i  205 (325)
                      ..|.+++|+|+| +.|++++. +.|++||+..        +.......+..|...+..++|+|++. .|++++ ++.|++
T Consensus       109 ~~v~~~~~SpDg-~~l~~~~~-~~i~~~d~~~--------~~~~~~~~l~~~~~~~~~~~~SPDG~-~la~~~-~~~i~~  176 (741)
T 2ecf_A          109 TGIVDYQWSPDA-QRLLFPLG-GELYLYDLKQ--------EGKAAVRQLTHGEGFATDAKLSPKGG-FVSFIR-GRNLWV  176 (741)
T ss_dssp             EESCCCEECTTS-SEEEEEET-TEEEEEESSS--------CSTTSCCBCCCSSSCEEEEEECTTSS-EEEEEE-TTEEEE
T ss_pred             cCcceeEECCCC-CEEEEEeC-CcEEEEECCC--------CCcceEEEcccCCcccccccCCCCCC-EEEEEe-CCcEEE
Confidence            358899999999 67777765 8999999986        20002334567778899999999998 788877 569999


Q ss_pred             EeCCCCCCCCcccceEeeecCCcc----------------EEEEEeecCCCcEEEEEecCC-------------------
Q 020480          206 WDINAAPKNKSLEAMQIFKVHEGV----------------VEDVAWHLRHEYLFGSVGDDQ-------------------  250 (325)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~----------------v~~v~~~p~~~~~l~s~~~dg-------------------  250 (325)
                      ||+.++.      .......+...                +..++|+|++ ..|++++.|+                   
T Consensus       177 ~d~~~g~------~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~  249 (741)
T 2ecf_A          177 IDLASGR------QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVI  249 (741)
T ss_dssp             EETTTTE------EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred             EecCCCC------EEEeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccce
Confidence            9998752      22222222221                4789999998 4666776655                   


Q ss_pred             --------------cEEEEEccC-CCCCCCeeEee--ccCCCeeEEEeCCCCCcc-------CCCCceEEeeecc
Q 020480          251 --------------YLLIWDLRT-PSVSKPVQSVV--AHQSEVGVSILNASFRLS-------HEDTCTCTHRHSR  301 (325)
Q Consensus       251 --------------~i~iwd~~~-~~~~~~~~~~~--~h~~~v~~i~~~p~~~~~-------~~~d~~~~~~~~~  301 (325)
                                    .|++||+.+ ++.   .....  .|...+.+++| |+|+..       +..+..+.+|+..
T Consensus       250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~  320 (741)
T 2ecf_A          250 EQRYPAAGDANVQVKLGVISPAEQAQT---QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA  320 (741)
T ss_dssp             EEECCBTTSCCCEEEEEEECSSTTCCC---EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT
T ss_pred             EeecCCCCCCCCeeEEEEEECCCCCce---EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC
Confidence                          788999988 663   22222  46778999999 999841       2245667777653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.43  E-value=6.9e-12  Score=108.05  Aligned_cols=154  Identities=10%  Similarity=0.014  Sum_probs=106.2

Q ss_pred             CeeEEEecCCCCcEEEEEe------------cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeE
Q 020480          127 EVNRARYMPQNPFLIATKT------------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL  194 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  194 (325)
                      .+..++|+|++ +.++++.            .++.|.+||+..          ...+..+.. ...+.+++|+|++. .+
T Consensus        83 ~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~-~~~~~~~~~s~dg~-~l  149 (337)
T 1pby_B           83 SLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAET----------LSRRKAFEA-PRQITMLAWARDGS-KL  149 (337)
T ss_dssp             CTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTT----------TEEEEEEEC-CSSCCCEEECTTSS-CE
T ss_pred             cccceEECCCC-CEEEEEecccccccccccccCceEEEEECCC----------CcEEEEEeC-CCCcceeEECCCCC-EE
Confidence            67889999998 5666664            579999999976          223344443 45678899999998 56


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcc------cc------------------------------------------eEe----
Q 020480          195 LSGSDDAQICLWDINAAPKNKSL------EA------------------------------------------MQI----  222 (325)
Q Consensus       195 ~s~s~dg~i~iwd~~~~~~~~~~------~~------------------------------------------~~~----  222 (325)
                      +++  ++.|.+||+.++.....+      .+                                          +..    
T Consensus       150 ~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  227 (337)
T 1pby_B          150 YGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE  227 (337)
T ss_dssp             EEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT
T ss_pred             EEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC
Confidence            666  688999998765321000      00                                          001    


Q ss_pred             --------eecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCC
Q 020480          223 --------FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDT  292 (325)
Q Consensus       223 --------~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d  292 (325)
                              +..+...+.+++|+|++ .+++++  ++.|++||+.+++.   +..+. ....+.+++|+|+|+.  +++.+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~~~~---~~~~~-~~~~~~~~~~s~dg~~l~~~~~~  300 (337)
T 1pby_B          228 TGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNAS---IKRVP-LPHSYYSVNVSTDGSTVWLGGAL  300 (337)
T ss_dssp             TCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTEE---EEEEE-CSSCCCEEEECTTSCEEEEESBS
T ss_pred             CCCceEeecCCCCCceeeEEECCCC-CEEEEe--CCeEEEEECCCCcC---cceec-CCCceeeEEECCCCCEEEEEcCC
Confidence                    11223346679999997 466666  79999999988763   45544 3456889999999983  56778


Q ss_pred             ceEEeeecce
Q 020480          293 CTCTHRHSRY  302 (325)
Q Consensus       293 ~~~~~~~~~~  302 (325)
                      +.+.+|+...
T Consensus       301 ~~i~v~d~~~  310 (337)
T 1pby_B          301 GDLAAYDAET  310 (337)
T ss_dssp             SEEEEEETTT
T ss_pred             CcEEEEECcC
Confidence            8999998753

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.43  E-value=5.8e-11  Score=103.84  Aligned_cols=203  Identities=13%  Similarity=0.047  Sum_probs=131.8

Q ss_pred             eEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEE
Q 020480           63 VQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIA  142 (325)
Q Consensus        63 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la  142 (325)
                      ...+++|+.+.. ....|.++.+..                        ..+.+...... +...+..++|+|++ ++|+
T Consensus        13 ~~~~~vg~y~~~-~~~~i~~~~~d~------------------------~~g~~~~~~~~-~~~~p~~l~~spdg-~~l~   65 (361)
T 3scy_A           13 ELTMLVGTYTSG-NSKGIYTFRFNE------------------------ETGESLPLSDA-EVANPSYLIPSADG-KFVY   65 (361)
T ss_dssp             EEEEEEEECCSS-SCCEEEEEEEET------------------------TTCCEEEEEEE-ECSCCCSEEECTTS-SEEE
T ss_pred             ceEEEEEeccCC-CCCCEEEEEEeC------------------------CCCCEEEeecc-cCCCCceEEECCCC-CEEE
Confidence            467889998653 456899998862                        23455555555 77888899999999 5777


Q ss_pred             EEecC----CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe-CCCcEEEEeCCCCCCCCcc
Q 020480          143 TKTVS----AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-DDAQICLWDINAAPKNKSL  217 (325)
Q Consensus       143 ~g~~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~  217 (325)
                      +++.+    +.|.+|++...      .+....+.....+......+++  ++. .+++++ .++.|.+|++........+
T Consensus        66 ~~~~~~~~~~~v~~~~~~~~------~g~~~~~~~~~~~~~~p~~~~~--dg~-~l~~~~~~~~~v~~~~~~~~g~~~~~  136 (361)
T 3scy_A           66 SVNEFSKDQAAVSAFAFDKE------KGTLHLLNTQKTMGADPCYLTT--NGK-NIVTANYSGGSITVFPIGQDGALLPA  136 (361)
T ss_dssp             EEECCSSTTCEEEEEEEETT------TTEEEEEEEEECSSSCEEEEEE--CSS-EEEEEETTTTEEEEEEBCTTSCBCSC
T ss_pred             EEEccCCCCCcEEEEEEeCC------CCcEEEeeEeccCCCCcEEEEE--CCC-EEEEEECCCCEEEEEEeCCCCcCccc
Confidence            77665    89999988651      0112233344445567788888  666 455544 6899999999754322111


Q ss_pred             cceEeeec--------CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC------CCC----eeEeeccCCCeeEE
Q 020480          218 EAMQIFKV--------HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV------SKP----VQSVVAHQSEVGVS  279 (325)
Q Consensus       218 ~~~~~~~~--------~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~------~~~----~~~~~~h~~~v~~i  279 (325)
                      .......+        +...+.+++|+|++..+++++..++.|++|++.....      ...    ......+...+.++
T Consensus       137 ~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  216 (361)
T 3scy_A          137 SDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHL  216 (361)
T ss_dssp             SEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEE
T ss_pred             ceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEE
Confidence            11111111        1234688999999865666666789999999886441      100    01122345567899


Q ss_pred             EeCCCCCc---cCCCCceEEeeecc
Q 020480          280 ILNASFRL---SHEDTCTCTHRHSR  301 (325)
Q Consensus       280 ~~~p~~~~---~~~~d~~~~~~~~~  301 (325)
                      +|+|+|++   +...++.+.+|++.
T Consensus       217 ~~spdg~~l~v~~~~~~~v~v~~~~  241 (361)
T 3scy_A          217 IFNSDGKFAYLINEIGGTVIAFRYA  241 (361)
T ss_dssp             EECTTSSEEEEEETTTCEEEEEEEE
T ss_pred             EEcCCCCEEEEEcCCCCeEEEEEec
Confidence            99999983   34468889999865

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.41  E-value=2.5e-13  Score=126.84  Aligned_cols=148  Identities=10%  Similarity=0.041  Sum_probs=110.0

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC----Cc
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD----AQ  202 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d----g~  202 (325)
                      .+...+|+|++..++++.+.++.+.+||+..        +.   ...+..+..  .+++|+|+|. ++++++.+    +.
T Consensus       111 ~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~--------g~---~~~l~~~~~--~~~~~spDG~-~la~~~~~~~~~~~  176 (582)
T 3o4h_A          111 PMRILSGVDTGEAVVFTGATEDRVALYALDG--------GG---LRELARLPG--FGFVSDIRGD-LIAGLGFFGGGRVS  176 (582)
T ss_dssp             SBEEEEEEECSSCEEEEEECSSCEEEEEEET--------TE---EEEEEEESS--CEEEEEEETT-EEEEEEEEETTEEE
T ss_pred             CceeeeeCCCCCeEEEEecCCCCceEEEccC--------Cc---EEEeecCCC--ceEEECCCCC-EEEEEEEcCCCCeE
Confidence            3446688888755444444455566999876        22   223333333  7899999999 78877776    78


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC--cEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      |++||+.++.       ...+..|...+..++|+|+| ..|+++..++  .|++||+.+++.   . .+..|...+..++
T Consensus       177 i~~~d~~~g~-------~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~---~-~~~~~~~~~~~~~  244 (582)
T 3o4h_A          177 LFTSNLSSGG-------LRVFDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGSV---E-DLELPSKDFSSYR  244 (582)
T ss_dssp             EEEEETTTCC-------CEEECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCCE---E-ECCCSCSHHHHHC
T ss_pred             EEEEcCCCCC-------ceEeecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCcE---E-EccCCCcChhhhh
Confidence            9999998763       33567788889999999998 5777888888  899999998773   3 5566777777777


Q ss_pred             --------eCCCCCc--cCCCCceEEeeec
Q 020480          281 --------LNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       281 --------~~p~~~~--~~~~d~~~~~~~~  300 (325)
                              |+|+|.+  +++.++++++|.+
T Consensus       245 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          245 PTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             hccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence                    9999975  6778899999986

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.39  E-value=6.3e-12  Score=119.89  Aligned_cols=166  Identities=9%  Similarity=0.056  Sum_probs=110.8

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC--------------CceEEEE
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS--------------TEGYGLS  185 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~--------------~~v~~l~  185 (325)
                      ....+.+.+..++|+|+| +.||++ .++.|++|++......     ..........+.              ..+.++.
T Consensus       115 ~l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~~~-----~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~  187 (706)
T 2z3z_A          115 YLFDTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLGEG-----MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTF  187 (706)
T ss_dssp             EEECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTTSC-----CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEE
T ss_pred             EccCCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCccccc-----CCCcEEeccCCCCCeEcccchhhhhcCCCceEE
Confidence            345677789999999999 577774 6899999998750000     001111111122              2257899


Q ss_pred             ecCCCCCeEEEEe---------------------------------CCCcEEEEeCCCCCCCCcccceEeeecCCccEEE
Q 020480          186 WSKFKEGHLLSGS---------------------------------DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED  232 (325)
Q Consensus       186 ~~p~~~~~l~s~s---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  232 (325)
                      |+|++. .|++++                                 .+..|++||+.++..    ..+.....|...+.+
T Consensus       188 ~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~~~  262 (706)
T 2z3z_A          188 WSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT----VYLQTGEPKEKFLTN  262 (706)
T ss_dssp             ECTTSS-EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE----EECCCCSCTTCEEEE
T ss_pred             ECCCCC-EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce----EeeccCCCCceeEee
Confidence            999999 788877                                 457799999987632    111111246678999


Q ss_pred             EEeecCCCcEEEEEecCC-----cEEEEEccCCCCCCCeeEee--ccCC---CeeEEEeCC--CCCc--cCCCCceEEee
Q 020480          233 VAWHLRHEYLFGSVGDDQ-----YLLIWDLRTPSVSKPVQSVV--AHQS---EVGVSILNA--SFRL--SHEDTCTCTHR  298 (325)
Q Consensus       233 v~~~p~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~--~h~~---~v~~i~~~p--~~~~--~~~~d~~~~~~  298 (325)
                      ++|+|++ ..|++++.++     .|++||+.+++.   ...+.  .+..   .+.+++|+|  +|++  +++.++..++|
T Consensus       263 ~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~---~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~  338 (706)
T 2z3z_A          263 LSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRF---VRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLY  338 (706)
T ss_dssp             EEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCE---EEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEE
T ss_pred             EEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCce---eeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEE
Confidence            9999998 5777777665     899999998842   33332  2222   347789999  9985  56677888888


Q ss_pred             ecc
Q 020480          299 HSR  301 (325)
Q Consensus       299 ~~~  301 (325)
                      .+.
T Consensus       339 ~~~  341 (706)
T 2z3z_A          339 LYD  341 (706)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.37  E-value=1.7e-11  Score=106.23  Aligned_cols=155  Identities=9%  Similarity=-0.010  Sum_probs=102.7

Q ss_pred             CeeEEEecCCCCcEEEEEecC------------CeEEEEeCCCCCCCCCCCCC-CCCcEEEecCCCceEEEEecCCCCCe
Q 020480          127 EVNRARYMPQNPFLIATKTVS------------AEVYVFDYSKHPSKPPLDGA-CSPDLRLRGHSTEGYGLSWSKFKEGH  193 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~d------------g~v~vwd~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~  193 (325)
                      .+..++|+|++ +.+++++.+            +.|.+||+..        +. ...+..+. +...+.+++|+|++. +
T Consensus        93 ~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~--------~~~~~~~~~~~-~~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           93 SMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTAD--------GLEAKPVRTFP-MPRQVYLMRAADDGS-L  161 (349)
T ss_dssp             CSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGG--------GGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred             cccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCC--------ccccceeeecc-CCCcccceeECCCCc-E
Confidence            37889999999 577776654            8999999875        21 12233343 334688999999998 5


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccce--------------------------E--------------------------
Q 020480          194 LLSGSDDAQICLWDINAAPKNKSLEAM--------------------------Q--------------------------  221 (325)
Q Consensus       194 l~s~s~dg~i~iwd~~~~~~~~~~~~~--------------------------~--------------------------  221 (325)
                      ++ ++  +.|.+||+.++.....+..-                          .                          
T Consensus       162 ~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  238 (349)
T 1jmx_B          162 YV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  238 (349)
T ss_dssp             EE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             EE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence            55 43  34999999876421100000                          0                          


Q ss_pred             ----------eeecCCccEEEEEeec-CCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--c
Q 020480          222 ----------IFKVHEGVVEDVAWHL-RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--S  288 (325)
Q Consensus       222 ----------~~~~~~~~v~~v~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~  288 (325)
                                .+..+...+..++|+| ++ .+++++  ++.|.+||+.+++.   +..+. ....+.+++|+|+|+.  +
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~~~---~~~~~-~~~~~~~~~~s~dg~~l~~  311 (349)
T 1jmx_B          239 DLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQRKL---IKAAN-LDHTYYCVAFDKKGDKLYL  311 (349)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE--ESEEEEEETTTTEE---EEEEE-CSSCCCEEEECSSSSCEEE
T ss_pred             eccCCcEEecccccCCCcceeeEecCCCC-CEEEEE--cCeEEEEECccCeE---EEEEc-CCCCccceEECCCCCEEEE
Confidence                      0000112456778889 87 466666  88999999998763   45544 3445789999999873  5


Q ss_pred             CCCCceEEeeecce
Q 020480          289 HEDTCTCTHRHSRY  302 (325)
Q Consensus       289 ~~~d~~~~~~~~~~  302 (325)
                      ++.++.+.+|+...
T Consensus       312 ~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          312 GGTFNDLAVFNPDT  325 (349)
T ss_dssp             ESBSSEEEEEETTT
T ss_pred             ecCCCeEEEEeccc
Confidence            66778999998754

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.35  E-value=4.7e-11  Score=104.41  Aligned_cols=164  Identities=10%  Similarity=0.070  Sum_probs=104.3

Q ss_pred             eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCC-CCC----cEEEecCCCceEEEEecCCCCCeEEEEe-CCC
Q 020480          128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA-CSP----DLRLRGHSTEGYGLSWSKFKEGHLLSGS-DDA  201 (325)
Q Consensus       128 v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~-~~~----~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg  201 (325)
                      +.+++|+|++..+++++..++.|.+|++........  .. ...    ......+......++|+|++. ++++++ .++
T Consensus       157 ~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~v~~~~~~  233 (361)
T 3scy_A          157 LHCVRITPDGKYLLADDLGTDQIHKFNINPNANADN--KEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK-FAYLINEIGG  233 (361)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTT--CCCCEEEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTC
T ss_pred             ceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccc--ccceeecccccceecCCCCCCeEEEEcCCCC-EEEEEcCCCC
Confidence            477999999954566666689999999875110000  00 000    111223445678999999998 555555 789


Q ss_pred             cEEEEeCCCCCCCCcccceEee---ecCCccEEEEEeecCCCcEEEEEec-CCcEEEEEccC--CCCCCCeeEeeccCCC
Q 020480          202 QICLWDINAAPKNKSLEAMQIF---KVHEGVVEDVAWHLRHEYLFGSVGD-DQYLLIWDLRT--PSVSKPVQSVVAHQSE  275 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~v~~~p~~~~~l~s~~~-dg~i~iwd~~~--~~~~~~~~~~~~h~~~  275 (325)
                      .|.+||+..+..    ..+..+   ..+......++|+|++..++++... ++.|.+|++..  +. ...+..+.. ...
T Consensus       234 ~v~v~~~~~g~~----~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~-~~~~~~~~~-g~~  307 (361)
T 3scy_A          234 TVIAFRYADGML----DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT-LTKVGYQLT-GIH  307 (361)
T ss_dssp             EEEEEEEETTEE----EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC-EEEEEEEEC-SSC
T ss_pred             eEEEEEecCCce----EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc-EEEeeEecC-CCC
Confidence            999999985421    122222   2333557899999998544455555 68999999963  33 112333333 557


Q ss_pred             eeEEEeCCCCCc---cCCCCceEEeeec
Q 020480          276 VGVSILNASFRL---SHEDTCTCTHRHS  300 (325)
Q Consensus       276 v~~i~~~p~~~~---~~~~d~~~~~~~~  300 (325)
                      +.+++|+|+|++   ....++.+.+|.+
T Consensus       308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          308 PRNFIITPNGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             CCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             CceEEECCCCCEEEEEECCCCCEEEEEE
Confidence            889999999983   3346778888644

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.33  E-value=2.2e-11  Score=121.33  Aligned_cols=152  Identities=11%  Similarity=0.029  Sum_probs=119.1

Q ss_pred             cCCCeeEEEec-CCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC-ceEEEEecCCCCCeEEEEeCCC
Q 020480          124 HDGEVNRARYM-PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST-EGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       124 h~~~v~~v~~~-~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      |...+.+++|+ |+| +.+++++ ++.|.+|+...           .....+..|.. .+..++|+ ++. .+++++.++
T Consensus       294 ~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~s-dg~-~l~~~s~~~  358 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSG-----------TYVLKVPEPLRIRYVRRGGD-TKV-AFIHGTREG  358 (1045)
T ss_dssp             ECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTS-----------SBEEECSCCSCEEEEEECSS-SEE-EEEEEETTE
T ss_pred             cccccceeeecCCCC-CEEEEEE-cCEEEEEcCCC-----------CceEEccCCCcceEEeeeEc-CCC-eEEEEECCC
Confidence            34479999999 998 6777766 78999999876           22344566777 89999999 887 788888888


Q ss_pred             cEE-EEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          202 QIC-LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       202 ~i~-iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      .+. +||+..+.       ...+.+|...+..++|+|++ ..|++++.++.|++||+.+++.   ......|...+.+++
T Consensus       359 ~l~~~~d~~~~~-------~~~l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~---~~~~~~~~~~v~~~~  427 (1045)
T 1k32_A          359 DFLGIYDYRTGK-------AEKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKP---TVIERSREAMITDFT  427 (1045)
T ss_dssp             EEEEEEETTTCC-------EEECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE---EEEEECSSSCCCCEE
T ss_pred             ceEEEEECCCCC-------ceEecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCce---EEeccCCCCCccceE
Confidence            888 89987652       23344777889999999998 6888999999999999998873   455557889999999


Q ss_pred             eCCCCCc--cCCC----------CceEEeeecc
Q 020480          281 LNASFRL--SHED----------TCTCTHRHSR  301 (325)
Q Consensus       281 ~~p~~~~--~~~~----------d~~~~~~~~~  301 (325)
                      |+|+|+.  .++.          +..+++|++.
T Consensus       428 ~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          428 ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             ECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             ECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence            9999984  2222          3588888764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.32  E-value=6.5e-11  Score=112.89  Aligned_cols=156  Identities=10%  Similarity=0.084  Sum_probs=107.7

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCC-----eEEEEeCCCCCCCCCCCCCCCCcEEEe--cCCC---ceEEEEecC--CC
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSA-----EVYVFDYSKHPSKPPLDGACSPDLRLR--GHST---EGYGLSWSK--FK  190 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~---~v~~l~~~p--~~  190 (325)
                      .|...+..++|+|+| +.|++++.++     .|++||+.+        +.  ....+.  .+..   .+..+.|+|  ++
T Consensus       255 ~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~--------g~--~~~~~~~~~~~~~~~~~~~~~~sp~~dg  323 (706)
T 2z3z_A          255 PKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAET--------GR--FVRTLFVETDKHYVEPLHPLTFLPGSNN  323 (706)
T ss_dssp             CTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTT--------CC--EEEEEEEEECSSCCCCCSCCEECTTCSS
T ss_pred             CCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCC--------Cc--eeeEEEEccCCCeECccCCceeecCCCC
Confidence            466789999999999 6777777665     899999886        21  122221  2222   246789999  98


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEE-EEeecCCCcEEEEEecCC----cEEEEEccCCCCCCC
Q 020480          191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED-VAWHLRHEYLFGSVGDDQ----YLLIWDLRTPSVSKP  265 (325)
Q Consensus       191 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~-v~~~p~~~~~l~s~~~dg----~i~iwd~~~~~~~~~  265 (325)
                      . ++++++.|+.++||++....     ..+..+..+...+.. ++|+|++..++++++.++    .|..||+.++.    
T Consensus       324 ~-~l~~~~~~g~~~l~~~~~~~-----~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----  393 (706)
T 2z3z_A          324 Q-FIWQSRRDGWNHLYLYDTTG-----RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----  393 (706)
T ss_dssp             E-EEEEECTTSSCEEEEEETTS-----CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC----
T ss_pred             E-EEEEEccCCccEEEEEECCC-----CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC----
Confidence            8 89999999999999886321     235566677777876 799999865666666665    56666666654    


Q ss_pred             eeEeeccCCCeeEEEeCCCCCc---cCCCC---ceEEeeec
Q 020480          266 VQSVVAHQSEVGVSILNASFRL---SHEDT---CTCTHRHS  300 (325)
Q Consensus       266 ~~~~~~h~~~v~~i~~~p~~~~---~~~~d---~~~~~~~~  300 (325)
                      ...+. |...+.+++|+|+|+.   .++.+   ..+.+|+.
T Consensus       394 ~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          394 TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred             ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence            33333 6677999999999984   22222   45777764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.32  E-value=8.4e-11  Score=109.65  Aligned_cols=129  Identities=12%  Similarity=-0.079  Sum_probs=103.0

Q ss_pred             eEEEecCCCCcEEEEEecC----CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC--c
Q 020480          129 NRARYMPQNPFLIATKTVS----AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA--Q  202 (325)
Q Consensus       129 ~~v~~~~~~~~~la~g~~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg--~  202 (325)
                      .+++|+|+| +.||+++.+    +.|++||+.+        +   ....+..|...+..++|+|+|. .|+++..++  .
T Consensus       153 ~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~--------g---~~~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~  219 (582)
T 3o4h_A          153 FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSS--------G---GLRVFDSGEGSFSSASISPGMK-VTAGLETAREAR  219 (582)
T ss_dssp             CEEEEEEET-TEEEEEEEEETTEEEEEEEETTT--------C---CCEEECCSSCEEEEEEECTTSC-EEEEEECSSCEE
T ss_pred             ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCC--------C---CceEeecCCCccccceECCCCC-EEEEccCCCeeE
Confidence            889999999 688877766    7899999876        2   2446778888999999999999 788888898  8


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCccEEEEE--------eecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVA--------WHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS  274 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~--------~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~  274 (325)
                      |++||+.++.      .. .+..|...+..++        |+|++ .++++++.++.+++|++  ++.   ..   ...+
T Consensus       220 i~~~d~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~---~~---~~~~  283 (582)
T 3o4h_A          220 LVTVDPRDGS------VE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GER---VE---APQG  283 (582)
T ss_dssp             EEEECTTTCC------EE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEE---EC---CCSS
T ss_pred             EEEEcCCCCc------EE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCe---ec---cCCC
Confidence            9999998763      23 5566666666666        99998 89999999999999999  432   22   2346


Q ss_pred             CeeEEEeCCCCCc
Q 020480          275 EVGVSILNASFRL  287 (325)
Q Consensus       275 ~v~~i~~~p~~~~  287 (325)
                      .+.+++|+ ++++
T Consensus       284 ~v~~~~~s-dg~~  295 (582)
T 3o4h_A          284 NHGRVVLW-RGKL  295 (582)
T ss_dssp             EEEEEEEE-TTEE
T ss_pred             ceEEEEec-CCEE
Confidence            78899999 8875

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.30  E-value=2.1e-10  Score=100.64  Aligned_cols=195  Identities=10%  Similarity=0.023  Sum_probs=121.6

Q ss_pred             EEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEe--ccCCCeeEEEecCCCCcEE
Q 020480           64 QKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQI--NHDGEVNRARYMPQNPFLI  141 (325)
Q Consensus        64 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~~l  141 (325)
                      ..+++|+.+..   ..|+++.+..                        ..+.+......  .....+..++|+|++ ++|
T Consensus         3 ~~~~vg~~~~~---~~i~~~~~d~------------------------~~g~l~~~~~~~~~~~~~~~~~a~spdg-~~l   54 (365)
T 1jof_A            3 HHLMIGTWTPP---GAIFTVQFDD------------------------EKLTCKLIKRTEIPQDEPISWMTFDHER-KNI   54 (365)
T ss_dssp             EEEEEEESSSS---CEEEEEEEET------------------------TTTEEEEEEEEECCTTCCCSEEEECTTS-SEE
T ss_pred             EEEEEEEccCC---CcEEEEEEEC------------------------CCCCEEEeeEEccCCCCCCcEEEECCCC-CEE
Confidence            46778887542   3577776651                        13445444333  244578899999999 677


Q ss_pred             EEEecCCeEEEEeCC-CCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCC-eEEEEe-------------CCCcEEEE
Q 020480          142 ATKTVSAEVYVFDYS-KHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG-HLLSGS-------------DDAQICLW  206 (325)
Q Consensus       142 a~g~~dg~v~vwd~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~-~l~s~s-------------~dg~i~iw  206 (325)
                      ++++.+ .|.+|++. .        +....+.....+ +.+..++|+|++.. ++++++             .+|.+.+|
T Consensus        55 ~~~~~~-~v~~~~~~~~--------g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~  124 (365)
T 1jof_A           55 YGAAMK-KWSSFAVKSP--------TEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVF  124 (365)
T ss_dssp             EEEEBT-EEEEEEEEET--------TEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEE
T ss_pred             EEEccc-eEEEEEECCC--------CCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEE
Confidence            777777 99999986 4        211111112211 23566899999973 244553             68999999


Q ss_pred             eCCCCCCCCcccceEeee-cCCccEEEEEeecCCCcEEEEEe-cCCcEEEEEcc-CCCCCCCeeEee--ccCCCeeEEEe
Q 020480          207 DINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVG-DDQYLLIWDLR-TPSVSKPVQSVV--AHQSEVGVSIL  281 (325)
Q Consensus       207 d~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~--~h~~~v~~i~~  281 (325)
                      ++......  ...+..+. .+...+.+++|+|++. +++++. .++.|++||+. +++. ..+..+.  .|...+..++|
T Consensus       125 ~~~~~g~~--~~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~g~~p~~~~~  200 (365)
T 1jof_A          125 SVSETGKL--EKNVQNYEYQENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEV-ELVGSVDAPDPGDHPRWVAM  200 (365)
T ss_dssp             EECTTCCE--EEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCE-EEEEEEECSSTTCCEEEEEE
T ss_pred             ccCCCCcC--cceEeeEEeCCCCcceEEEECCCCC-EEEEEcCCCCEEEEEEECCCCCE-EEeeeEecCCCCCCCCEeEE
Confidence            99742110  01111111 2456789999999985 555544 57899999998 5542 1122332  24567899999


Q ss_pred             CCCCCc---cCCCCceEEeeec
Q 020480          282 NASFRL---SHEDTCTCTHRHS  300 (325)
Q Consensus       282 ~p~~~~---~~~~d~~~~~~~~  300 (325)
                      +|+|+.   ....++++.+|+.
T Consensus       201 spdg~~l~v~~~~~~~v~v~~~  222 (365)
T 1jof_A          201 HPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCCCEEEEEECCCCeEEEEEE
Confidence            999974   3334678888754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.27  E-value=5.1e-11  Score=103.19  Aligned_cols=152  Identities=7%  Similarity=-0.088  Sum_probs=104.4

Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceEEEEecCCCCCeEEEEeCCCcEEEEeC
Q 020480          130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSWSKFKEGHLLSGSDDAQICLWDI  208 (325)
Q Consensus       130 ~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~  208 (325)
                      .+++++.+ .++++++.++.|++||+.+          .+.+..+..+. ..+..++|+|++..+++++..++.|.+||+
T Consensus         4 g~~~~~~~-~~~v~~~~~~~v~~~d~~~----------~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~   72 (349)
T 1jmx_B            4 GPALKAGH-EYMIVTNYPNNLHVVDVAS----------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL   72 (349)
T ss_dssp             CCCCCTTC-EEEEEEETTTEEEEEETTT----------TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             cccccCCC-EEEEEeCCCCeEEEEECCC----------CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeC
Confidence            34566766 7899999999999999976          23344454332 257899999999845566678899999999


Q ss_pred             CCCCCCCcccceEeeec-C-----CccEEEEEeecCCCcEEEEEecC------------CcEEEEEccCCCCCCCeeEee
Q 020480          209 NAAPKNKSLEAMQIFKV-H-----EGVVEDVAWHLRHEYLFGSVGDD------------QYLLIWDLRTPSVSKPVQSVV  270 (325)
Q Consensus       209 ~~~~~~~~~~~~~~~~~-~-----~~~v~~v~~~p~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~  270 (325)
                      .++.      ....+.. +     ...+..++|+|++. .+++++.+            +.|.+||+.+++..+.+....
T Consensus        73 ~t~~------~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  145 (349)
T 1jmx_B           73 DTCK------NTFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP  145 (349)
T ss_dssp             TTTE------EEEEEESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE
T ss_pred             CCCc------EEEEEEcccccccccccccceEECCCCC-EEEEEcccccccccccccCCCeEEEEECCCccccceeeecc
Confidence            8763      3333332 2     22377899999984 66666654            899999998854322344443


Q ss_pred             ccCCCeeEEEeCCCCCccCCCCceEEeeecc
Q 020480          271 AHQSEVGVSILNASFRLSHEDTCTCTHRHSR  301 (325)
Q Consensus       271 ~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~~  301 (325)
                       +...+.+++|+|+|++... +..+.+|+..
T Consensus       146 -~~~~~~~~~~s~dg~l~~~-~~~i~~~d~~  174 (349)
T 1jmx_B          146 -MPRQVYLMRAADDGSLYVA-GPDIYKMDVK  174 (349)
T ss_dssp             -CCSSCCCEEECTTSCEEEE-SSSEEEECTT
T ss_pred             -CCCcccceeECCCCcEEEc-cCcEEEEeCC
Confidence             3446889999999986221 2337777653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.27  E-value=2.7e-11  Score=115.82  Aligned_cols=141  Identities=16%  Similarity=0.179  Sum_probs=96.3

Q ss_pred             CeeEEEecCCCCcEEEEEec---------CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480          127 EVNRARYMPQNPFLIATKTV---------SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~---------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  197 (325)
                      .+.+++|+|+| +.||+++.         ++.|++||+.+        +.......+   ...+..++|+|+|. .|+.+
T Consensus        61 ~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~~~d~~~--------g~~~~~~~l---~~~~~~~~~SPDG~-~la~~  127 (719)
T 1z68_A           61 NASNYGLSPDR-QFVYLESDYSKLWRYSYTATYYIYDLSN--------GEFVRGNEL---PRPIQYLCWSPVGS-KLAYV  127 (719)
T ss_dssp             TCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTT--------TEECCSSCC---CSSBCCEEECSSTT-CEEEE
T ss_pred             ceeeEEECCCC-CeEEEEecCceeEEeecceEEEEEECCC--------Cccccceec---CcccccceECCCCC-EEEEE
Confidence            48999999999 67877765         68999999987        222000111   24688999999999 68777


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceEeeecCCccE-----------------EEEEeecCCCcEEEEEecCC----------
Q 020480          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVV-----------------EDVAWHLRHEYLFGSVGDDQ----------  250 (325)
Q Consensus       198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v-----------------~~v~~~p~~~~~l~s~~~dg----------  250 (325)
                      . ++.|++||+.++...    .+ ...++...|                 .+++|+|+| ..||+++.|.          
T Consensus       128 ~-~~~i~~~~~~~g~~~----~l-~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~  200 (719)
T 1z68_A          128 Y-QNNIYLKQRPGDPPF----QI-TFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSY  200 (719)
T ss_dssp             E-TTEEEEESSTTSCCE----EC-CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEE
T ss_pred             E-CCeEEEEeCCCCCcE----EE-ecCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeec
Confidence            5 789999999876421    00 112222212                 489999998 5777776542          


Q ss_pred             ------------------------cEEEEEccCCCCCC--Ce---eEeeccCCCeeEEEeCCCCCc
Q 020480          251 ------------------------YLLIWDLRTPSVSK--PV---QSVVAHQSEVGVSILNASFRL  287 (325)
Q Consensus       251 ------------------------~i~iwd~~~~~~~~--~~---~~~~~h~~~v~~i~~~p~~~~  287 (325)
                                              .|++||+.+++...  .+   ..+.+|...+.+++|+|++++
T Consensus       201 ~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~  266 (719)
T 1z68_A          201 YGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERV  266 (719)
T ss_dssp             CCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEE
T ss_pred             cCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeE
Confidence                                    78899998765200  00   122357778999999999875

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.23  E-value=2.5e-10  Score=98.19  Aligned_cols=114  Identities=14%  Similarity=0.110  Sum_probs=83.0

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-C----CCceEEEEecCCCCCeEEEEe---
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-H----STEGYGLSWSKFKEGHLLSGS---  198 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-h----~~~v~~l~~~p~~~~~l~s~s---  198 (325)
                      .+..++|+|++..+++++..++.|.+||+..          .+.+..+.. +    ...+..++|+|++. .+++++   
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~  103 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVT----------GETLGRIDLSTPEERVKSLFGAALSPDGK-TLAIYESPV  103 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTT----------CCEEEEEECCBTTEEEECTTCEEECTTSS-EEEEEEEEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCC----------CCeEeeEEcCCcccccccccceEECCCCC-EEEEEeccc
Confidence            5889999999865667777789999999976          233333432 1    12567899999998 677775   


Q ss_pred             ---------CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480          199 ---------DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (325)
Q Consensus       199 ---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~  261 (325)
                               .++.|.+||+.++      ..+..+.. ...+.+++|+|++. .++++  ++.|++||+.+++
T Consensus       104 ~~~~~~~~~~~~~i~v~d~~~~------~~~~~~~~-~~~~~~~~~s~dg~-~l~~~--~~~i~~~d~~~~~  165 (337)
T 1pby_B          104 RLELTHFEVQPTRVALYDAETL------SRRKAFEA-PRQITMLAWARDGS-KLYGL--GRDLHVMDPEAGT  165 (337)
T ss_dssp             EECSSCEEECCCEEEEEETTTT------EEEEEEEC-CSSCCCEEECTTSS-CEEEE--SSSEEEEETTTTE
T ss_pred             ccccccccccCceEEEEECCCC------cEEEEEeC-CCCcceeEECCCCC-EEEEe--CCeEEEEECCCCc
Confidence                     5799999999865      23444443 44578899999985 44455  6889999998754

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.20  E-value=2.1e-10  Score=100.65  Aligned_cols=151  Identities=11%  Similarity=-0.033  Sum_probs=108.5

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC-CCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEE
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP-LDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~i  205 (325)
                      .++.+++++.. .++++|+.+ .+.+|++........ ......+.... .+.. |+.|+|  ++. +|+++ .++.|++
T Consensus        39 ~~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~-~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGD-QVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETT-EEEEE-ESSEEEE
T ss_pred             cccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCC-EEEEE-cCCcEEE
Confidence            58999999988 588888887 566698754210000 00112333333 4666 999999  676 78887 8899999


Q ss_pred             EeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCC
Q 020480          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASF  285 (325)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~  285 (325)
                      ||++....      ......|...+.++.+.+.  + +++++.||.|.+||+.....   . .   +...|+|++|+|+|
T Consensus       111 ~dv~sl~~------~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~---~-~---~~~~Vs~v~WSpkG  174 (388)
T 1xip_A          111 LDLEELSE------FRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKST---K-Q---LAQNVTSFDVTNSQ  174 (388)
T ss_dssp             EESSSTTC------EEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCE---E-E---EEESEEEEEECSSE
T ss_pred             EEchhhhc------cCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcc---c-c---ccCCceEEEEcCCc
Confidence            99987642      3344566777888776643  3 88899999999999997762   2 2   45689999999999


Q ss_pred             CccCCCCceEEeeecc
Q 020480          286 RLSHEDTCTCTHRHSR  301 (325)
Q Consensus       286 ~~~~~~d~~~~~~~~~  301 (325)
                      ...+..|+++++|+..
T Consensus       175 ~~vg~~dg~i~~~~~~  190 (388)
T 1xip_A          175 LAVLLKDRSFQSFAWR  190 (388)
T ss_dssp             EEEEETTSCEEEEEEE
T ss_pred             eEEEEcCCcEEEEcCC
Confidence            7788889999998543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.19  E-value=1.3e-09  Score=104.73  Aligned_cols=151  Identities=9%  Similarity=0.079  Sum_probs=100.3

Q ss_pred             eEEEecCCCCcEEEEEecC---------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          129 NRARYMPQNPFLIATKTVS---------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       129 ~~v~~~~~~~~~la~g~~d---------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ..+.|+|+| +.|+.++.+         +.+.+||+.+        +..   ..+..|...+...+|||+|. .|+.+. 
T Consensus        65 ~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~~~d~~~--------~~~---~~l~~~~~~~~~~~~SPdG~-~la~~~-  130 (740)
T 4a5s_A           65 NDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNK--------RQL---ITEERIPNNTQWVTWSPVGH-KLAYVW-  130 (740)
T ss_dssp             CEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTT--------TEE---CCSSCCCTTEEEEEECSSTT-CEEEEE-
T ss_pred             cceEECCCC-CEEEEEECCeeeEEEccceEEEEEECCC--------CcE---EEcccCCCcceeeEECCCCC-EEEEEE-
Confidence            458899999 677877765         5677999987        322   23456777899999999999 677774 


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccE-----------------EEEEeecCCCcEEEEEecCC------------
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVV-----------------EDVAWHLRHEYLFGSVGDDQ------------  250 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v-----------------~~v~~~p~~~~~l~s~~~dg------------  250 (325)
                      ++.|++||+..+...    .+ +..++...+                 ..+.|+|+| ..||.++.|.            
T Consensus       131 ~~~i~~~~~~~~~~~----~l-t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~  204 (740)
T 4a5s_A          131 NNDIYVKIEPNLPSY----RI-TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYS  204 (740)
T ss_dssp             TTEEEEESSTTSCCE----EC-CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECC
T ss_pred             CCeEEEEECCCCceE----EE-cCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeec
Confidence            689999999876421    11 112222222                 348999998 4666664322            


Q ss_pred             ------------------------cEEEEEccC---CCCCCCeeEee------ccCCCeeEEEeCCCCCc------cCCC
Q 020480          251 ------------------------YLLIWDLRT---PSVSKPVQSVV------AHQSEVGVSILNASFRL------SHED  291 (325)
Q Consensus       251 ------------------------~i~iwd~~~---~~~~~~~~~~~------~h~~~v~~i~~~p~~~~------~~~~  291 (325)
                                              .|++||+.+   +...+ ...+.      +|...+..++|+|+|++      ..+.
T Consensus       205 ~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~  283 (740)
T 4a5s_A          205 DESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT-SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQN  283 (740)
T ss_dssp             STTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC-EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTT
T ss_pred             CCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce-EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCC
Confidence                                    477888887   63111 22332      26677899999999983      2234


Q ss_pred             CceEEeeec
Q 020480          292 TCTCTHRHS  300 (325)
Q Consensus       292 d~~~~~~~~  300 (325)
                      +..+.+|+.
T Consensus       284 ~~~i~~~d~  292 (740)
T 4a5s_A          284 YSVMDICDY  292 (740)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEC
Confidence            456777764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.18  E-value=2.5e-09  Score=93.70  Aligned_cols=163  Identities=9%  Similarity=0.079  Sum_probs=103.9

Q ss_pred             cCCCeeEEEecCCCCcEEEEEe-cCCeEEEEeCC-CCCCCCCCCCCCCCcEEEe--cCCCceEEEEecCCCCCeEEEEe-
Q 020480          124 HDGEVNRARYMPQNPFLIATKT-VSAEVYVFDYS-KHPSKPPLDGACSPDLRLR--GHSTEGYGLSWSKFKEGHLLSGS-  198 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~-~dg~v~vwd~~-~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~s~s-  198 (325)
                      +...+.+++|+|+| ++++++. .++.|++|++. .        +....+..+.  .|...+..++|+|++. ++++++ 
T Consensus       143 ~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~--------g~~~~~~~~~~~~~g~~p~~~~~spdg~-~l~v~~~  212 (365)
T 1jof_A          143 ENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLAS--------GEVELVGSVDAPDPGDHPRWVAMHPTGN-YLYALME  212 (365)
T ss_dssp             TTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTT--------SCEEEEEEEECSSTTCCEEEEEECTTSS-EEEEEET
T ss_pred             CCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCC--------CCEEEeeeEecCCCCCCCCEeEECCCCC-EEEEEEC
Confidence            45689999999999 4555544 46799999987 4        2222223333  2456789999999998 566655 


Q ss_pred             CCCcEEEEeCCCCCCCCc--ccceEeee----cCCc------cEEEEE-eecCCCcEEEEEe-cCC-----cEEEEEcc-
Q 020480          199 DDAQICLWDINAAPKNKS--LEAMQIFK----VHEG------VVEDVA-WHLRHEYLFGSVG-DDQ-----YLLIWDLR-  258 (325)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~--~~~~~~~~----~~~~------~v~~v~-~~p~~~~~l~s~~-~dg-----~i~iwd~~-  258 (325)
                      .++.|.+|++........  ...+..+.    +|..      .+..++ |+|++. +|++++ .+.     .|.+|++. 
T Consensus       213 ~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~-~l~v~~~~~~~~~~~~i~v~~~~~  291 (365)
T 1jof_A          213 AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK-YMFASSRANKFELQGYIAGFKLRD  291 (365)
T ss_dssp             TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS-EEEEEEEESSTTSCCEEEEEEECT
T ss_pred             CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC-EEEEECCCCCCCCCCeEEEEEECC
Confidence            578999998763211000  00111121    2222      588999 999985 444444 333     89999997 


Q ss_pred             CCCCCCCeeE----eeccCCCeeEEEeCC---CCCc--cCC-CCceEEeeecc
Q 020480          259 TPSVSKPVQS----VVAHQSEVGVSILNA---SFRL--SHE-DTCTCTHRHSR  301 (325)
Q Consensus       259 ~~~~~~~~~~----~~~h~~~v~~i~~~p---~~~~--~~~-~d~~~~~~~~~  301 (325)
                      +++    +..    ...+...+..++|+|   +|++  +++ .++++.+|++.
T Consensus       292 ~g~----~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~  340 (365)
T 1jof_A          292 CGS----IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             TSC----EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             CCC----EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence            333    322    333555678899999   7874  444 45889998764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.17  E-value=8.9e-10  Score=96.67  Aligned_cols=135  Identities=7%  Similarity=0.002  Sum_probs=102.5

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ...+++ |+.++|  ++ ..|+++ .++.|++||+..          .........|...+.++.+.+.   .+++++.|
T Consensus        84 ~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~dv~s----------l~~~~~~~~~~~~v~~i~~~~p---~~av~~~d  145 (388)
T 1xip_A           84 EKEIPD-VIFVCF--HG-DQVLVS-TRNALYSLDLEE----------LSEFRTVTSFEKPVFQLKNVNN---TLVILNSV  145 (388)
T ss_dssp             EEECTT-EEEEEE--ET-TEEEEE-ESSEEEEEESSS----------TTCEEEEEECSSCEEEEEECSS---EEEEEETT
T ss_pred             EeeCCC-eeEEEE--CC-CEEEEE-cCCcEEEEEchh----------hhccCccceeecceeeEEecCC---CEEEEECC
Confidence            345777 999999  56 688887 889999999987          2223455677788888887654   38889999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe------e---c
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV------V---A  271 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~---~  271 (325)
                      |.|.+||+..+..      .    .+...|.+++|+|+|   ++.|..||.+++|+....... +..++      .   +
T Consensus       146 G~L~v~dl~~~~~------~----~~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~-~k~~I~~Pp~~~~~~~  211 (388)
T 1xip_A          146 NDLSALDLRTKST------K----QLAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEME-KQFEFSLPSELEELPV  211 (388)
T ss_dssp             SEEEEEETTTCCE------E----EEEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEE-EEEEECCCHHHHTSCT
T ss_pred             CCEEEEEccCCcc------c----cccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCcccc-ccceecCCcccccccC
Confidence            9999999986532      1    134579999999987   678999999999988776510 01233      2   3


Q ss_pred             cCCCeeEEEeCCCCCc
Q 020480          272 HQSEVGVSILNASFRL  287 (325)
Q Consensus       272 h~~~v~~i~~~p~~~~  287 (325)
                      |...|.+|.|.+++.+
T Consensus       212 ~~~~V~sI~wl~~~~f  227 (388)
T 1xip_A          212 EEYSPLSVTILSPQDF  227 (388)
T ss_dssp             TTSEEEEEEESSSSEE
T ss_pred             CCeeEEEEEEecCCeE
Confidence            6788999999998884

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.16  E-value=4e-09  Score=88.89  Aligned_cols=152  Identities=8%  Similarity=-0.011  Sum_probs=111.1

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe--cCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR--GHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      +...+..+++.+++ +++++...++.|.+|+...           ..+..+.  .+...+.++++++++. ++++...++
T Consensus       119 ~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g-----------~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~  185 (286)
T 1q7f_A          119 ILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNG-----------NVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAH  185 (286)
T ss_dssp             TCSCEEEEEECTTS-CEEEEETTTTEEEEECTTS-----------CEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGT
T ss_pred             cCCCceEEEEeCCC-CEEEEECCCCEEEEEcCCC-----------CEEEEeCCCCccCCcEEEEECCCCC-EEEEECCCC
Confidence            34578899999988 6888877889999999654           2233343  3455789999999987 788888899


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecC--CccEEEEEeecCCCcEEEEEecCC-cEEEEEccCCCCCCCeeEeeccCC--Ce
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVH--EGVVEDVAWHLRHEYLFGSVGDDQ-YLLIWDLRTPSVSKPVQSVVAHQS--EV  276 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~--~~~v~~v~~~p~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~h~~--~v  276 (325)
                      .|++||....       .+..+..+  ...+..++++|++ +++++...++ .|++||.. ++   .+..+..+..  .+
T Consensus       186 ~i~~~~~~g~-------~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~-g~---~~~~~~~~~~~~~~  253 (286)
T 1q7f_A          186 CVKVFNYEGQ-------YLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQD-GQ---LISALESKVKHAQC  253 (286)
T ss_dssp             EEEEEETTCC-------EEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTT-SC---EEEEEEESSCCSCE
T ss_pred             EEEEEcCCCC-------EEEEEccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCC-CC---EEEEEcccCCCCcc
Confidence            9999997532       23444332  3578899999987 6888887776 99999954 33   2555544433  47


Q ss_pred             eEEEeCCCCCc-cCCCCceEEeeec
Q 020480          277 GVSILNASFRL-SHEDTCTCTHRHS  300 (325)
Q Consensus       277 ~~i~~~p~~~~-~~~~d~~~~~~~~  300 (325)
                      .+++++|+|.+ .++.++++++|+.
T Consensus       254 ~~i~~~~~g~l~vs~~~~~v~v~~~  278 (286)
T 1q7f_A          254 FDVALMDDGSVVLASKDYRLYIYRY  278 (286)
T ss_dssp             EEEEEETTTEEEEEETTTEEEEEEC
T ss_pred             eeEEECCCCcEEEECCCCeEEEEEc
Confidence            79999999986 3356788888864

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.14  E-value=6.6e-11  Score=113.12  Aligned_cols=133  Identities=8%  Similarity=0.110  Sum_probs=92.5

Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC---ceEEEEecCCCCCeEEEEeC-------
Q 020480          130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST---EGYGLSWSKFKEGHLLSGSD-------  199 (325)
Q Consensus       130 ~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~~l~s~s~-------  199 (325)
                      .++|+|++ .++++ +.|+.|++||+..        +  .....+.+|..   .+.+++|+|+|. +|++++.       
T Consensus        20 ~~~~s~dg-~~~~~-~~d~~i~~~~~~~--------g--~~~~~~~~~~~~~~~~~~~~~SpDg~-~la~~~~~~~~~~~   86 (719)
T 1z68_A           20 FPNWISGQ-EYLHQ-SADNNIVLYNIET--------G--QSYTILSNRTMKSVNASNYGLSPDRQ-FVYLESDYSKLWRY   86 (719)
T ss_dssp             CCEESSSS-EEEEE-CTTSCEEEEESSS--------C--CEEEEECHHHHHTTTCSEEEECTTSS-EEEEEEEEEECSSS
T ss_pred             ccEECCCC-eEEEE-cCCCCEEEEEcCC--------C--cEEEEEccccccccceeeEEECCCCC-eEEEEecCceeEEe
Confidence            67899998 56555 5699999999987        2  22333434432   388999999999 7888776       


Q ss_pred             --CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-eccCCCe
Q 020480          200 --DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSEV  276 (325)
Q Consensus       200 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v  276 (325)
                        ++.|++||+.++....    ...+   ...+..++|+|+|. .||++. ++.|++||+.+++.   .... .++...|
T Consensus        87 s~~~~i~~~d~~~g~~~~----~~~l---~~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~~---~~l~~~~~~~~v  154 (719)
T 1z68_A           87 SYTATYYIYDLSNGEFVR----GNEL---PRPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDPP---FQITFNGRENKI  154 (719)
T ss_dssp             CEEEEEEEEETTTTEECC----SSCC---CSSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSCC---EECCCCCBTTTE
T ss_pred             ecceEEEEEECCCCcccc----ceec---CcccccceECCCCC-EEEEEE-CCeEEEEeCCCCCc---EEEecCCCcCCe
Confidence              7899999998763200    0111   24588899999984 666664 78999999988763   2211 2222222


Q ss_pred             -----------------eEEEeCCCCCc
Q 020480          277 -----------------GVSILNASFRL  287 (325)
Q Consensus       277 -----------------~~i~~~p~~~~  287 (325)
                                       .+++|+|+|+.
T Consensus       155 ~~g~~~~v~~ee~~~~~~~~~wSPDG~~  182 (719)
T 1z68_A          155 FNGIPDWVYEEEMLATKYALWWSPNGKF  182 (719)
T ss_dssp             EESSCCHHHHHHTTCSSCCEEECTTSSE
T ss_pred             EcccccceeeeecccCcccEEECCCCCE
Confidence                             58999999984

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.06  E-value=2.8e-08  Score=85.79  Aligned_cols=156  Identities=10%  Similarity=0.006  Sum_probs=110.6

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE---------ecCCCceEEEEecC-CCCCe
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL---------RGHSTEGYGLSWSK-FKEGH  193 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~---------~~h~~~v~~l~~~p-~~~~~  193 (325)
                      +-.....++++++| +++++...++.|++|+...         ....+..+         .++......++++| ++. +
T Consensus        89 ~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g---------~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-l  157 (329)
T 3fvz_A           89 LFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHS---------KEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-V  157 (329)
T ss_dssp             TCSSEEEEEECTTS-CEEEEETTTTEEEEECTTC---------SSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-E
T ss_pred             ccCCceEEEECCCC-CEEEEECCCCEEEEEeCCC---------CeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-E
Confidence            44578899999998 5888888899999999865         11234444         23445789999999 666 7


Q ss_pred             EEEEe-CCCcEEEEeCCCCCCCCcccceEeeec----------CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC
Q 020480          194 LLSGS-DDAQICLWDINAAPKNKSLEAMQIFKV----------HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV  262 (325)
Q Consensus       194 l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~----------~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  262 (325)
                      +++.+ .++.|++||.. +      ..+..+..          +-.....++++|++..++++...++.|++||..+++.
T Consensus       158 yv~d~~~~~~I~~~~~~-g------~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~  230 (329)
T 3fvz_A          158 FVSDGYCNSRIVQFSPS-G------KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF  230 (329)
T ss_dssp             EEEECSSCCEEEEECTT-S------CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEEeCCCCCeEEEEcCC-C------CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE
Confidence            77776 69999999954 3      22333322          1234889999998557888888999999999987663


Q ss_pred             CCCeeEe--eccCCCeeEEEeCC------CCCc--cCCCCceEEeeec
Q 020480          263 SKPVQSV--VAHQSEVGVSILNA------SFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       263 ~~~~~~~--~~h~~~v~~i~~~p------~~~~--~~~~d~~~~~~~~  300 (325)
                         +..+  ..+...+.+++|+|      +|.+  +.....++.+|+.
T Consensus       231 ---~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~  275 (329)
T 3fvz_A          231 ---VREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNF  275 (329)
T ss_dssp             ---EEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEET
T ss_pred             ---EEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEc
Confidence               5555  34566788999999      5543  3334446666653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.03  E-value=1.2e-09  Score=104.95  Aligned_cols=136  Identities=10%  Similarity=0.064  Sum_probs=96.6

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc-----eEEEEecCCCCCeEEEEeCC
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE-----GYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~~p~~~~~l~s~s~d  200 (325)
                      .....++|+|++ .+++++  ||.|++|++.+        +.  ....+.+|...     ..++.|+|++. .|+.++.+
T Consensus        17 ~~~~~~~w~~dg-~~~~~~--~~~i~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~   82 (740)
T 4a5s_A           17 LKLYSLRWISDH-EYLYKQ--ENNILVFNAEY--------GN--SSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNY   82 (740)
T ss_dssp             CCCCCEEECSSS-EEEEEE--TTEEEEEETTT--------CC--EEEEECTTTTTTCCSCCCEEEECTTSS-EEEEEEEE
T ss_pred             ccccccEECCCC-cEEEEc--CCcEEEEECCC--------Cc--eEEEEechhhhhhcccccceEECCCCC-EEEEEECC
Confidence            345688999998 688885  89999999987        32  23345555532     24588999999 78888776


Q ss_pred             ---------CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCee-Eee
Q 020480          201 ---------AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ-SVV  270 (325)
Q Consensus       201 ---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~  270 (325)
                               +.+.+||+.++.       ...+..+...+...+|||+|. .||.+ .++.|++||+.++..   .. +..
T Consensus        83 ~~~~r~~~~~~~~~~d~~~~~-------~~~l~~~~~~~~~~~~SPdG~-~la~~-~~~~i~~~~~~~~~~---~~lt~~  150 (740)
T 4a5s_A           83 VKQWRHSYTASYDIYDLNKRQ-------LITEERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNLPS---YRITWT  150 (740)
T ss_dssp             EECSSSCEEEEEEEEETTTTE-------ECCSSCCCTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTSCC---EECCSC
T ss_pred             eeeEEEccceEEEEEECCCCc-------EEEcccCCCcceeeEECCCCC-EEEEE-ECCeEEEEECCCCce---EEEcCC
Confidence                     567799999863       223556677899999999984 66666 578999999988763   21 112


Q ss_pred             ccCCC-----------------eeEEEeCCCCCc
Q 020480          271 AHQSE-----------------VGVSILNASFRL  287 (325)
Q Consensus       271 ~h~~~-----------------v~~i~~~p~~~~  287 (325)
                      ++...                 ...+.|||+|+.
T Consensus       151 g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~  184 (740)
T 4a5s_A          151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF  184 (740)
T ss_dssp             CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE
T ss_pred             CCccceecCcccccccchhcCCCcceEECCCCCE
Confidence            22222                 245899999984

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.01  E-value=2.2e-09  Score=101.56  Aligned_cols=160  Identities=9%  Similarity=-0.052  Sum_probs=104.0

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecC----------CeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCC
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVS----------AEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEG  192 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~d----------g~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~  192 (325)
                      |...+..++|+|+| +.|++++.+          ..|++|++......     .......+. .+...+..++|+|+|. 
T Consensus       128 ~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~SpDG~-  200 (662)
T 3azo_A          128 GGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA-----DRSAVRELSDDAHRFVTGPRLSPDGR-  200 (662)
T ss_dssp             TCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT-----CGGGSEESSCSCSSEECCCEECTTSS-
T ss_pred             CCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCCCccc-----cCCceeEEEecCCCcccCceECCCCC-
Confidence            45678899999999 577777766          58999998651000     001133444 5566788899999999 


Q ss_pred             eEEEEeCC--------CcEEEEeCC-CCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc--EEEEEccCCC
Q 020480          193 HLLSGSDD--------AQICLWDIN-AAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPS  261 (325)
Q Consensus       193 ~l~s~s~d--------g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~--i~iwd~~~~~  261 (325)
                      .|+.++.+        ..|++||+. .+...   ........+...+..++|+|++. +++++..++.  |.+||+.+++
T Consensus       201 ~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~---~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~  276 (662)
T 3azo_A          201 QAVWLAWDHPRMPWEGTELKTARVTEDGRFA---DTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGA  276 (662)
T ss_dssp             EEEEEEECTTCCTTTCEEEEEEEECTTSCEE---EEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCC
T ss_pred             EEEEEECCCCCCCCCCcEEEEEEECCCCccc---ccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCc
Confidence            77776644        379999998 33100   12223344567899999999986 8888888884  5555554444


Q ss_pred             CCCCeeEe-eccCCC--------eeEEEeCCCCCc--cCCCCceEEeee
Q 020480          262 VSKPVQSV-VAHQSE--------VGVSILNASFRL--SHEDTCTCTHRH  299 (325)
Q Consensus       262 ~~~~~~~~-~~h~~~--------v~~i~~~p~~~~--~~~~d~~~~~~~  299 (325)
                          ...+ ..+...        +.+++|+|++++  +++. +..++|.
T Consensus       277 ----~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  320 (662)
T 3azo_A          277 ----ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI  320 (662)
T ss_dssp             ----EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred             ----eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence                2333 222211        567889998885  4445 7777773

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.98  E-value=9.3e-08  Score=82.26  Aligned_cols=158  Identities=8%  Similarity=-0.012  Sum_probs=106.0

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC-
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD-  200 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-  200 (325)
                      ..+...+.+++|++++ ++++++..++.|.+|+...        +..  ......+...+.+++|+|++. ++++...+ 
T Consensus        41 ~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~--------~~~--~~~~~~~~~~~~~i~~~~dg~-l~v~~~~~~  108 (333)
T 2dg1_A           41 SKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPET--------KEI--KRPFVSHKANPAAIKIHKDGR-LFVCYLGDF  108 (333)
T ss_dssp             ESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTT--------CCE--EEEEECSSSSEEEEEECTTSC-EEEEECTTS
T ss_pred             eccCccccCcEECCCC-CEEEEECCCCEEEEEeCCC--------CcE--EEEeeCCCCCcceEEECCCCc-EEEEeCCCC
Confidence            3466677899999988 5888888899999999876        221  222224567899999999987 77777666 


Q ss_pred             ---CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec------CCcEEEEEccCCCCCCCeeEeec
Q 020480          201 ---AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD------DQYLLIWDLRTPSVSKPVQSVVA  271 (325)
Q Consensus       201 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~  271 (325)
                         +.|.+||......    ..+.....+...+.+++++|++ .++++...      .+.|..+|..+.+    +..+..
T Consensus       109 ~~~~~i~~~d~~~~~~----~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~  179 (333)
T 2dg1_A          109 KSTGGIFAATENGDNL----QDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRT----VTPIIQ  179 (333)
T ss_dssp             SSCCEEEEECTTSCSC----EEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCC----EEEEEE
T ss_pred             CCCceEEEEeCCCCEE----EEEEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCE----EEEeec
Confidence               6899999886532    1011101234578999999987 56666543      2455555554443    333333


Q ss_pred             cCCCeeEEEeCCCCC-c--cCCCCceEEeeec
Q 020480          272 HQSEVGVSILNASFR-L--SHEDTCTCTHRHS  300 (325)
Q Consensus       272 h~~~v~~i~~~p~~~-~--~~~~d~~~~~~~~  300 (325)
                      ....+..++|+|+|. +  +...++.+..|+.
T Consensus       180 ~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~  211 (333)
T 2dg1_A          180 NISVANGIALSTDEKVLWVTETTANRLHRIAL  211 (333)
T ss_dssp             EESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             CCCcccceEECCCCCEEEEEeCCCCeEEEEEe
Confidence            445688999999987 3  3334567777765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.98  E-value=5.9e-08  Score=83.69  Aligned_cols=156  Identities=15%  Similarity=0.025  Sum_probs=110.3

Q ss_pred             CCCeeEEEecCCCCcEEEEEecC------------------------CeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCC
Q 020480          125 DGEVNRARYMPQNPFLIATKTVS------------------------AEVYVFDYSKHPSKPPLDGACSPDLRLR-GHST  179 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~d------------------------g~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~  179 (325)
                      -+.+.+++++|+| +++++...+                        +.|.+||..+        +  +.+..+. ++..
T Consensus        23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--------g--~~~~~~~~~~~~   91 (329)
T 3fvz_A           23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN--------A--EILQSSGKNLFY   91 (329)
T ss_dssp             CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT--------C--CEEEEECTTTCS
T ss_pred             cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC--------C--eEEeccCCCccC
Confidence            3678999999998 688887766                        4799999875        2  2233332 3445


Q ss_pred             ceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEee---------ecCCccEEEEEeecCCCcEEEEEe-cC
Q 020480          180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIF---------KVHEGVVEDVAWHLRHEYLFGSVG-DD  249 (325)
Q Consensus       180 ~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~v~~v~~~p~~~~~l~s~~-~d  249 (325)
                      ....++++|++. ++++...++.|++||......     .+..+         ..+-.....++++|++..++++.+ .+
T Consensus        92 ~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~-----~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~  165 (329)
T 3fvz_A           92 LPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEG-----PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN  165 (329)
T ss_dssp             SEEEEEECTTSC-EEEEETTTTEEEEECTTCSSC-----CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSC
T ss_pred             CceEEEECCCCC-EEEEECCCCEEEEEeCCCCeE-----EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCC
Confidence            789999999998 899988999999999864311     23333         234446889999994346888886 69


Q ss_pred             CcEEEEEccCCCCCCCeeEeecc----------CCCeeEEEeCCC-CCc--cCCCCceEEeeecc
Q 020480          250 QYLLIWDLRTPSVSKPVQSVVAH----------QSEVGVSILNAS-FRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       250 g~i~iwd~~~~~~~~~~~~~~~h----------~~~v~~i~~~p~-~~~--~~~~d~~~~~~~~~  301 (325)
                      +.|++||. .+.   .+..+...          -.....|+++|+ +.+  +...++.++.|+..
T Consensus       166 ~~I~~~~~-~g~---~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~  226 (329)
T 3fvz_A          166 SRIVQFSP-SGK---FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD  226 (329)
T ss_dssp             CEEEEECT-TSC---EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CeEEEEcC-CCC---EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence            99999994 444   24444322          234889999998 775  55567788888764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.97  E-value=7.4e-08  Score=91.95  Aligned_cols=154  Identities=9%  Similarity=-0.077  Sum_probs=97.9

Q ss_pred             eeEEEecCCCCcEEEEEecCCe----------------EEEEeCCCCCCCCCCCCCCCCcEEEe--cCCCceEEEEecCC
Q 020480          128 VNRARYMPQNPFLIATKTVSAE----------------VYVFDYSKHPSKPPLDGACSPDLRLR--GHSTEGYGLSWSKF  189 (325)
Q Consensus       128 v~~v~~~~~~~~~la~g~~dg~----------------v~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~  189 (325)
                      +..++|+|+| +.|+.++.++.                |++|++.+        +.......+.  .|...+..+.|+|+
T Consensus       173 ~~~~~wspDg-~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t--------~~~~~~~v~~~~~~~~~~~~~~~SpD  243 (710)
T 2xdw_A          173 FSCMAWTHDG-KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGT--------DQSEDILCAEFPDEPKWMGGAELSDD  243 (710)
T ss_dssp             SCCEEECTTS-SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTS--------CGGGCEEEECCTTCTTCEEEEEECTT
T ss_pred             cceEEEEeCC-CEEEEEEECCccccccccccccCCCCEEEEEECCC--------CcccceEEeccCCCCeEEEEEEEcCC
Confidence            6789999999 56776666655                99999976        2222222233  24556889999999


Q ss_pred             CCCeEEEEeC-----CCcEEEEeCCC------CCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC---CcEEEE
Q 020480          190 KEGHLLSGSD-----DAQICLWDINA------APKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD---QYLLIW  255 (325)
Q Consensus       190 ~~~~l~s~s~-----dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d---g~i~iw  255 (325)
                      +. +|+.++.     +..|++||+..      +..     ....+..+...+.. .|+|++..+++.+..+   +.|.+|
T Consensus       244 g~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-----~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~  316 (710)
T 2xdw_A          244 GR-YVLLSIREGCDPVNRLWYCDLQQESNGITGIL-----KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI  316 (710)
T ss_dssp             SC-EEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-----CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred             CC-EEEEEEEccCCCccEEEEEECcccccccCCcc-----ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence            99 5665543     56899999976      321     23444555555544 4788876555555433   369999


Q ss_pred             EccCCCCCCCeeEeeccCC--CeeEEEeCCCCCc--cCCCCceEEee
Q 020480          256 DLRTPSVSKPVQSVVAHQS--EVGVSILNASFRL--SHEDTCTCTHR  298 (325)
Q Consensus       256 d~~~~~~~~~~~~~~~h~~--~v~~i~~~p~~~~--~~~~d~~~~~~  298 (325)
                      |+.+... .....+..|..  .+..++|++++.+  +...++..++|
T Consensus       317 d~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~  362 (710)
T 2xdw_A          317 DFTDPEE-SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQ  362 (710)
T ss_dssp             ETTSCCG-GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEE
T ss_pred             eCCCCCc-ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEE
Confidence            9887641 01344444543  6888999977664  45556655544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.97  E-value=8e-09  Score=97.67  Aligned_cols=158  Identities=6%  Similarity=-0.062  Sum_probs=97.5

Q ss_pred             EEEec--CCCCcEEEEEe-cCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-----CCCceEEEEecCCCCCeEEEEeCC-
Q 020480          130 RARYM--PQNPFLIATKT-VSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-----HSTEGYGLSWSKFKEGHLLSGSDD-  200 (325)
Q Consensus       130 ~v~~~--~~~~~~la~g~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~p~~~~~l~s~s~d-  200 (325)
                      ...|+  |+|..+|+.++ .+..|.++++...        .......+..     |...+.+++|+|++. .|++++.+ 
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~--------g~~~~~~l~~~~~~~~~~~~~~~~~spDg~-~l~~~~~~~  151 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAP--------GGAVPRPLTPVSAVGGGLRWADPVLLPERG-EVWCMAEEF  151 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTST--------TCCCCEECSCCCCSTTCEEEEEEEEETTTT-EEEEEEEEE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCC--------CCCCCEeccCCccCCCCccccCcEECCCCC-EEEEEEecc
Confidence            44555  88854155443 3567777776500        0011233444     567789999999999 78887766 


Q ss_pred             ---------CcEEEEeCCCCCCCCcccceEeee-cCCccEEEEEeecCCCcEEEEEecC--------CcEEEEEcc-CCC
Q 020480          201 ---------AQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDD--------QYLLIWDLR-TPS  261 (325)
Q Consensus       201 ---------g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~s~~~d--------g~i~iwd~~-~~~  261 (325)
                               ..|++||+........-. ...+. .+...+..++|+|+| ..|+.++.+        ..|++||+. ++.
T Consensus       152 ~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~  229 (662)
T 3azo_A          152 TGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGR  229 (662)
T ss_dssp             CSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred             cCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence                     589999998720000001 22334 455678889999998 566666644        379999998 452


Q ss_pred             CCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEee
Q 020480          262 VSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHR  298 (325)
Q Consensus       262 ~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~  298 (325)
                      ..........|...+..++|+|+|++  +++.++..++|
T Consensus       230 ~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~  268 (662)
T 3azo_A          230 FADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLH  268 (662)
T ss_dssp             EEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEE
T ss_pred             ccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEE
Confidence            00012333445778999999999985  55556644444

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.93  E-value=9.3e-09  Score=90.43  Aligned_cols=158  Identities=8%  Similarity=0.066  Sum_probs=96.8

Q ss_pred             eccCCCeeEEEecC-CCCcEEEEEecC------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCC--CceEEEEecCCCCC
Q 020480          122 INHDGEVNRARYMP-QNPFLIATKTVS------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHS--TEGYGLSWSKFKEG  192 (325)
Q Consensus       122 ~~h~~~v~~v~~~~-~~~~~la~g~~d------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~p~~~~  192 (325)
                      ..+...+..+.|+| ++ +.|+.+...      ..|.+++...           .....+..+.  ..+....|+|++..
T Consensus       184 ~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~-----------~~~~~l~~~~~~~~~~~~~~spdg~~  251 (388)
T 3pe7_A          184 LQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDG-----------TNMRKVKTHAEGESCTHEFWVPDGSA  251 (388)
T ss_dssp             EEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTS-----------CCCEESCCCCTTEEEEEEEECTTSSC
T ss_pred             ecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCC-----------CceEEeeeCCCCcccccceECCCCCE
Confidence            35667789999999 88 566665543      3788888765           1233344444  25778899999984


Q ss_pred             eEEEEeCCC----cEEEEeCCCCCCCCcccceEeeecCCcc---EEEEEeecCCCcEEEEE--------ecCCcEEEEEc
Q 020480          193 HLLSGSDDA----QICLWDINAAPKNKSLEAMQIFKVHEGV---VEDVAWHLRHEYLFGSV--------GDDQYLLIWDL  257 (325)
Q Consensus       193 ~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~---v~~v~~~p~~~~~l~s~--------~~dg~i~iwd~  257 (325)
                      +++.+..++    .|++||+.++..    ..+..+.++...   ...++|+|++..++++.        ..+..|++||+
T Consensus       252 l~~~~~~~~~~~~~l~~~d~~~g~~----~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~  327 (388)
T 3pe7_A          252 LVYVSYLKGSPDRFIYSADPETLEN----RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM  327 (388)
T ss_dssp             EEEEEEETTCCCEEEEEECTTTCCE----EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEET
T ss_pred             EEEEecCCCCCcceEEEEecCCCce----EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec
Confidence            434343322    399999987642    223333221110   11237899986444433        55678999999


Q ss_pred             cCCCCCCCeeEeeccCC-----------CeeEEEeCCCCCc---cCCCCceEEeee
Q 020480          258 RTPSVSKPVQSVVAHQS-----------EVGVSILNASFRL---SHEDTCTCTHRH  299 (325)
Q Consensus       258 ~~~~~~~~~~~~~~h~~-----------~v~~i~~~p~~~~---~~~~d~~~~~~~  299 (325)
                      .+++    +..+..+..           .+.+++|+|+|+.   ....++...+|.
T Consensus       328 ~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~  379 (388)
T 3pe7_A          328 KNGT----QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL  379 (388)
T ss_dssp             TTTE----EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred             cCCc----eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence            8866    455555555           5788999999973   333445555543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.90  E-value=2.3e-08  Score=87.86  Aligned_cols=133  Identities=12%  Similarity=0.083  Sum_probs=92.1

Q ss_pred             EEecCCCCcEEEEEec-CC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEe
Q 020480          131 ARYMPQNPFLIATKTV-SA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD  207 (325)
Q Consensus       131 v~~~~~~~~~la~g~~-dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd  207 (325)
                      .+|+|+| +.|+.++. +|  .|.+||+..        +  .......++...+..+.|+|++. .|+.++.++.|++||
T Consensus        41 ~~~SpDg-~~l~~~~~~~g~~~l~~~d~~~--------g--~~~~lt~~~~~~~~~~~~spdg~-~l~~~~~~~~l~~~d  108 (388)
T 3pe7_A           41 KCFTRDG-SKLLFGGAFDGPWNYYLLDLNT--------Q--VATQLTEGRGDNTFGGFLSPDDD-ALFYVKDGRNLMRVD  108 (388)
T ss_dssp             CCBCTTS-CEEEEEECTTSSCEEEEEETTT--------C--EEEECCCSSCBCSSSCEECTTSS-EEEEEETTTEEEEEE
T ss_pred             ccCCCCC-CEEEEEEcCCCCceEEEEeCCC--------C--ceEEeeeCCCCCccceEEcCCCC-EEEEEeCCCeEEEEE
Confidence            7899999 56666665 67  488888876        2  22222334544555678999999 799999999999999


Q ss_pred             CCCCCCCCcccceEeeecCCccEEEEE--eecCCCcEEEEE----------------------ecCCcEEEEEccCCCCC
Q 020480          208 INAAPKNKSLEAMQIFKVHEGVVEDVA--WHLRHEYLFGSV----------------------GDDQYLLIWDLRTPSVS  263 (325)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~v~~v~--~~p~~~~~l~s~----------------------~~dg~i~iwd~~~~~~~  263 (325)
                      +.++.      ....+..+...+....  ++|++ .+++..                      ..+..|.+||+.+++  
T Consensus       109 ~~~g~------~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--  179 (388)
T 3pe7_A          109 LATLE------ENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--  179 (388)
T ss_dssp             TTTCC------EEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--
T ss_pred             CCCCc------ceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc--
Confidence            99863      2333444444454444  47877 455432                      234679999999876  


Q ss_pred             CCeeEeeccCCCeeEEEeCC-CCC
Q 020480          264 KPVQSVVAHQSEVGVSILNA-SFR  286 (325)
Q Consensus       264 ~~~~~~~~h~~~v~~i~~~p-~~~  286 (325)
                        ...+..+...+..++|+| +|+
T Consensus       180 --~~~l~~~~~~~~~~~~sp~dg~  201 (388)
T 3pe7_A          180 --STVILQENQWLGHPIYRPYDDS  201 (388)
T ss_dssp             --EEEEEEESSCEEEEEEETTEEE
T ss_pred             --eEEeecCCccccccEECCCCCC
Confidence              455556777899999999 887

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.89  E-value=2.2e-07  Score=78.06  Aligned_cols=151  Identities=9%  Similarity=0.055  Sum_probs=106.3

Q ss_pred             CCCeeEEEec-CCCCcEEEEEec-CCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          125 DGEVNRARYM-PQNPFLIATKTV-SAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       125 ~~~v~~v~~~-~~~~~~la~g~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      ...+..+++. +++ +++++... ++.|.+|+...           ..+..+. .+...+.+++++|++. ++++...++
T Consensus        76 ~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~~d~~g-----------~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~  142 (286)
T 1q7f_A           76 LLYPNRVAVVRNSG-DIIVTERSPTHQIQIYNQYG-----------QFVRKFGATILQHPRGVTVDNKGR-IIVVECKVM  142 (286)
T ss_dssp             BSSEEEEEEETTTT-EEEEEECGGGCEEEEECTTS-----------CEEEEECTTTCSCEEEEEECTTSC-EEEEETTTT
T ss_pred             ccCceEEEEEcCCC-eEEEEcCCCCCEEEEECCCC-----------cEEEEecCccCCCceEEEEeCCCC-EEEEECCCC
Confidence            3567889995 555 66666543 78999999543           2233343 3445789999999987 888888889


Q ss_pred             cEEEEeCCCCCCCCcccceEeee--cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc--CCCee
Q 020480          202 QICLWDINAAPKNKSLEAMQIFK--VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH--QSEVG  277 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h--~~~v~  277 (325)
                      .|.+||....       .+..+.  .+...+..++++|++ +++++...++.|++||... +   .+..+..+  ...+.
T Consensus       143 ~i~~~~~~g~-------~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g-~---~~~~~~~~g~~~~p~  210 (286)
T 1q7f_A          143 RVIIFDQNGN-------VLHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEG-Q---YLRQIGGEGITNYPI  210 (286)
T ss_dssp             EEEEECTTSC-------EEEEEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTC-C---EEEEESCTTTSCSEE
T ss_pred             EEEEEcCCCC-------EEEEeCCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCC-C---EEEEEccCCccCCCc
Confidence            9999996532       233332  344568999999987 6888888899999999743 3   24555333  35789


Q ss_pred             EEEeCCCCCc--cCCCCc-eEEeeec
Q 020480          278 VSILNASFRL--SHEDTC-TCTHRHS  300 (325)
Q Consensus       278 ~i~~~p~~~~--~~~~d~-~~~~~~~  300 (325)
                      .|+++++|.+  +...++ .+.+|+.
T Consensus       211 ~i~~d~~G~l~v~~~~~~~~i~~~~~  236 (286)
T 1q7f_A          211 GVGINSNGEILIADNHNNFNLTIFTQ  236 (286)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             EEEECCCCCEEEEeCCCCEEEEEECC
Confidence            9999999986  334454 7888864

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.86  E-value=1.3e-07  Score=90.21  Aligned_cols=164  Identities=10%  Similarity=-0.020  Sum_probs=102.1

Q ss_pred             cCCCeeEEEecCCCCcEEEEEec-----CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480          124 HDGEVNRARYMPQNPFLIATKTV-----SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~-----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      |...+..+.|+|+| +.|+.++.     +..|++||+.......   ........+..+...+.. .|+|++..+++.+.
T Consensus       231 ~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~  305 (710)
T 2xdw_A          231 EPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGI---TGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTN  305 (710)
T ss_dssp             CTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSS---CSSCCCEEEECSSSSCEE-EEEEETTEEEEEEC
T ss_pred             CCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECccccccc---CCccceEEeeCCCCcEEE-EEeccCCEEEEEEC
Confidence            45667889999999 46665543     5689999986410000   001134556666666655 48888884444443


Q ss_pred             CC---CcEEEEeCCCCCCCCcccceEeeecCCc--cEEEEEeecCCCcEEEEEecCCcE--EEEEccCCCCCCCeeEeec
Q 020480          199 DD---AQICLWDINAAPKNKSLEAMQIFKVHEG--VVEDVAWHLRHEYLFGSVGDDQYL--LIWDLRTPSVSKPVQSVVA  271 (325)
Q Consensus       199 ~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~--~v~~v~~~p~~~~~l~s~~~dg~i--~iwd~~~~~~~~~~~~~~~  271 (325)
                      .+   +.|.+||+..+..    .....+..|..  .+..++|++.+ .++++...++..  .+||+.+++   .+..+..
T Consensus       306 ~~~~~~~l~~~d~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~g~---~~~~l~~  377 (710)
T 2xdw_A          306 RHSPNYRLINIDFTDPEE----SKWKVLVPEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLATGA---LLKIFPL  377 (710)
T ss_dssp             TTCTTCEEEEEETTSCCG----GGCEEEECCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTTCC---EEEEECC
T ss_pred             CCCCCCEEEEEeCCCCCc----ccceeccCCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCCCC---EEEecCC
Confidence            33   3699999886531    11234444443  68889998654 688888889864  555665555   3566666


Q ss_pred             cCCCeeEEEeCCCCC-c-----cCCCCceEEeeec
Q 020480          272 HQSEVGVSILNASFR-L-----SHEDTCTCTHRHS  300 (325)
Q Consensus       272 h~~~v~~i~~~p~~~-~-----~~~~d~~~~~~~~  300 (325)
                      +...+..++++|++. +     +....+++..+++
T Consensus       378 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  412 (710)
T 2xdw_A          378 EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL  412 (710)
T ss_dssp             CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred             CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence            677888999999875 2     2223345666654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.85  E-value=2.5e-07  Score=78.25  Aligned_cols=156  Identities=10%  Similarity=-0.012  Sum_probs=108.8

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      .+.....+++|+|++..+++++..++.|..|+...           . ...+..+...+.+++++|++. ++++...++.
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~-----------~-~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~   91 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG-----------Q-LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRR   91 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS-----------C-EEEEESSCSSEEEEEECTTCC-EEEEETTTTE
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCC-----------C-eEEEECCCCCcceeeECCCCc-EEEEecCCCe
Confidence            45667889999999844888989999999999876           2 455666777899999999998 7777777799


Q ss_pred             EEEEeCCCCCCCCcccceEe-eec-CCccEEEEEeecCCCcEEEEEec-----------------CCcEEEEEccCCCCC
Q 020480          203 ICLWDINAAPKNKSLEAMQI-FKV-HEGVVEDVAWHLRHEYLFGSVGD-----------------DQYLLIWDLRTPSVS  263 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~-~~~-~~~~v~~v~~~p~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~  263 (325)
                      |.+||..++..    ..+.. ... ....++.++++|+| +++++.+.                 .+.|..++.. ++  
T Consensus        92 i~~~d~~~g~~----~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--  163 (296)
T 3e5z_A           92 LERQREPGGEW----ESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--  163 (296)
T ss_dssp             EEEECSTTCCE----EEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--
T ss_pred             EEEEcCCCCcE----EEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CC--
Confidence            99999876532    11111 111 12346789999987 57776321                 2345445443 22  


Q ss_pred             CCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          264 KPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       264 ~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                        +..+..+....+.++|+|+|++  +.+.++.+..|+..
T Consensus       164 --~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~  201 (296)
T 3e5z_A          164 --LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLN  201 (296)
T ss_dssp             --EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred             --EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEEC
Confidence              4555556677899999999984  44556677777653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.83  E-value=1.9e-07  Score=80.72  Aligned_cols=141  Identities=9%  Similarity=0.006  Sum_probs=87.0

Q ss_pred             eeEEEecCCCCcEEEEEec---------------------------CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc
Q 020480          128 VNRARYMPQNPFLIATKTV---------------------------SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE  180 (325)
Q Consensus       128 v~~v~~~~~~~~~la~g~~---------------------------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~  180 (325)
                      +..+.|+|++ +.|+.++.                           ...|++|++..        +.  .+..+.. . .
T Consensus       106 ~~~~~wspdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~--------~~--~~~~l~~-~-~  172 (347)
T 2gop_A          106 IRSLEWNEDS-RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES--------EE--VIEEFEK-P-R  172 (347)
T ss_dssp             EEEEEECTTS-SEEEEEEECCCC---------CCCC---------CEEEEEEEETTT--------TE--EEEEEEE-E-T
T ss_pred             ccceeECCCC-CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC--------Ce--EEeeecC-C-C
Confidence            8999999999 56665543                           25788899876        22  1133333 3 7


Q ss_pred             eEEEEecCCCCCeEEEEeCCC-------cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC----
Q 020480          181 GYGLSWSKFKEGHLLSGSDDA-------QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD----  249 (325)
Q Consensus       181 v~~l~~~p~~~~~l~s~s~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d----  249 (325)
                      +..+.|+|++  +++++..++       ...||.+..+       ....+..+ ..+..+  +|+|. .|+.++.+    
T Consensus       173 ~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~-------~~~~l~~~-~~~~~~--spdg~-~l~~~~~~~~~~  239 (347)
T 2gop_A          173 FSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDG-------KEEKMFEK-VSFYAV--DSDGE-RILLYGKPEKKY  239 (347)
T ss_dssp             TCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETT-------EEEEEEEE-ESEEEE--EECSS-CEEEEECCSSSC
T ss_pred             cccccCCCCe--EEEEEecccccccccccccEEEeCCC-------ceEEeccC-cceeeE--CCCCC-EEEEEEccccCC
Confidence            7899999998  677776542       4455554422       12233333 445444  99985 45555533    


Q ss_pred             ----CcEEEEEccCCCCCCCeeEeeccCCCeeE-EEeCCCCCc-cCCCCceEEeeecc
Q 020480          250 ----QYLLIWDLRTPSVSKPVQSVVAHQSEVGV-SILNASFRL-SHEDTCTCTHRHSR  301 (325)
Q Consensus       250 ----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~-i~~~p~~~~-~~~~d~~~~~~~~~  301 (325)
                          ..|.+||  +++   .......+...+.. +.|+ ++.+ +++.++..++| +.
T Consensus       240 ~~~~~~l~~~d--~~~---~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          240 MSEHNKLYIYD--GKE---VMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             CCSSCEEEEEC--SSC---EEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EE
T ss_pred             ccccceEEEEC--CCc---eEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-Ec
Confidence                3677777  333   12333455677886 9999 8833 66677888888 64

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.80  E-value=1.6e-07  Score=89.50  Aligned_cols=152  Identities=9%  Similarity=0.039  Sum_probs=95.4

Q ss_pred             eEEEecCCCCcEEEEEecCCe-------------EEEEeCCCCCCCCCCCCCCCCcEEE--ecCCCceEEEEecCCCCCe
Q 020480          129 NRARYMPQNPFLIATKTVSAE-------------VYVFDYSKHPSKPPLDGACSPDLRL--RGHSTEGYGLSWSKFKEGH  193 (325)
Q Consensus       129 ~~v~~~~~~~~~la~g~~dg~-------------v~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~  193 (325)
                      ..++|+|+| +.|+.++.+..             |++|++.+        +.......+  ..|...+.++.|+|++. +
T Consensus       171 ~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t--------~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~  240 (695)
T 2bkl_A          171 ATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGT--------EPSKDTVVHERTGDPTTFLQSDLSRDGK-Y  240 (695)
T ss_dssp             CCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEEEEETTS--------CGGGCEEEECCCCCTTCEEEEEECTTSC-C
T ss_pred             cceEEecCC-CEEEEEEecCCCCCccccCCCCCEEEEEECCC--------CchhceEEEecCCCCEEEEEEEECCCCC-E
Confidence            578999999 57777777665             99999976        222122223  34556789999999998 5


Q ss_pred             EEEEeCCC----cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe---cCCcEEEEEccCCCCCCCe
Q 020480          194 LLSGSDDA----QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG---DDQYLLIWDLRTPSVSKPV  266 (325)
Q Consensus       194 l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~  266 (325)
                      |+.++.++    .|++|+...+       ....+..+...+....| +++. +++++.   .++.|.+||+.++... ..
T Consensus       241 l~~~~~~~~~~~~l~~~~~~~~-------~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~-~~  310 (695)
T 2bkl_A          241 LFVYILRGWSENDVYWKRPGEK-------DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA-SW  310 (695)
T ss_dssp             EEEEEEETTTEEEEEEECTTCS-------SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG-GC
T ss_pred             EEEEEeCCCCceEEEEEcCCCC-------ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc-CC
Confidence            66555554    5666655433       13334445555566666 5665 555554   3588999998776410 12


Q ss_pred             eEeecc--CCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          267 QSVVAH--QSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       267 ~~~~~h--~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      ..+..+  ...+..++|+ ++.+  +...++..++|.+.
T Consensus       311 ~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          311 KEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             EEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             eEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            333333  4467888888 4443  55667777777543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.79  E-value=2.7e-07  Score=76.70  Aligned_cols=153  Identities=4%  Similarity=-0.062  Sum_probs=105.2

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~i  205 (325)
                      ..+..+++.+++ +++++...++.|.+|+...          .............+.++++++++. ++++...++.|.+
T Consensus       108 ~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~----------~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~  175 (270)
T 1rwi_B          108 NYPEGLAVDTQG-AVYVADRGNNRVVKLAAGS----------KTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVK  175 (270)
T ss_dssp             SSEEEEEECTTC-CEEEEEGGGTEEEEECTTC----------CSCEECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEE
T ss_pred             CCCcceEECCCC-CEEEEECCCCEEEEEECCC----------ceeEeeccccCCCceeEEEeCCCC-EEEEECCCCEEEE
Confidence            567899999988 6777777788999997543          111111112234578899999887 7888777899999


Q ss_pred             EeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCC
Q 020480          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASF  285 (325)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~  285 (325)
                      ||......      ......+...+..+++++++ +++++...++.|.+||......   ......+...+.+++++++|
T Consensus       176 ~~~~~~~~------~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~---~~~~~~~~~~p~~i~~~~~g  245 (270)
T 1rwi_B          176 LEAESNNQ------VVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTS---TVLPFTGLNTPLAVAVDSDR  245 (270)
T ss_dssp             ECTTTCCE------EECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCC---EECCCCSCSCEEEEEECTTC
T ss_pred             EecCCCce------EeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcc---eeeccCCCCCceeEEECCCC
Confidence            99876421      11112233568899999987 7888888889999999876542   22222233568999999999


Q ss_pred             Cc--cCCCCceEEeeec
Q 020480          286 RL--SHEDTCTCTHRHS  300 (325)
Q Consensus       286 ~~--~~~~d~~~~~~~~  300 (325)
                      .+  +...++.+++++.
T Consensus       246 ~l~v~~~~~~~v~~~~~  262 (270)
T 1rwi_B          246 TVYVADRGNDRVVKLTS  262 (270)
T ss_dssp             CEEEEEGGGTEEEEECC
T ss_pred             CEEEEECCCCEEEEEcC
Confidence            86  4445666666543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.71  E-value=1.8e-07  Score=89.12  Aligned_cols=158  Identities=9%  Similarity=-0.040  Sum_probs=95.4

Q ss_pred             cCCCeeEEEecCCCCcEEE-----EEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480          124 HDGEVNRARYMPQNPFLIA-----TKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la-----~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      |...+..++|+|+| ++||     .|+.+..|++||+.+        +.......+...  ....++|+|++. .|+.++
T Consensus       119 ~~~~~~~~~~SPDG-~~la~~~~~~G~~~~~i~v~dl~t--------g~~~~~~~~~~~--~~~~~~wspDg~-~l~~~~  186 (695)
T 2bkl_A          119 GTVSLGTWAVSWDG-KKVAFAQKPNAADEAVLHVIDVDS--------GEWSKVDVIEGG--KYATPKWTPDSK-GFYYEW  186 (695)
T ss_dssp             SCEEEEEEEECTTS-SEEEEEEEETTCSCCEEEEEETTT--------CCBCSSCCBSCC--TTCCCEECTTSS-EEEEEE
T ss_pred             CCEEEEEEEECCCC-CEEEEEECCCCCceEEEEEEECCC--------CCCcCCcccCcc--cccceEEecCCC-EEEEEE
Confidence            44568899999999 5666     334456899999987        222101011111  126899999999 788888


Q ss_pred             CCCc-------------EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC-C--cEEEEEccCCCC
Q 020480          199 DDAQ-------------ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-Q--YLLIWDLRTPSV  262 (325)
Q Consensus       199 ~dg~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d-g--~i~iwd~~~~~~  262 (325)
                      .|..             |++|++.++....  ..+.....+...+..+.|+|+|..++++...+ +  .|+++|..++. 
T Consensus       187 ~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~--~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-  263 (695)
T 2bkl_A          187 LPTDPSIKVDERPGYTTIRYHTLGTEPSKD--TVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-  263 (695)
T ss_dssp             CCCCTTSCGGGGGGGCEEEEEETTSCGGGC--EEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-
T ss_pred             ecCCCCCccccCCCCCEEEEEECCCCchhc--eEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-
Confidence            7766             9999998764210  12333334556788999999986444444333 3  45555544333 


Q ss_pred             CCCeeEeeccCCCeeEEEeCCCCCc--cCC---CCceEEeeec
Q 020480          263 SKPVQSVVAHQSEVGVSILNASFRL--SHE---DTCTCTHRHS  300 (325)
Q Consensus       263 ~~~~~~~~~h~~~v~~i~~~p~~~~--~~~---~d~~~~~~~~  300 (325)
                         ...+..+...+....|+ +|.+  ...   .++.+..|++
T Consensus       264 ---~~~l~~~~~~~~~~~~~-~g~l~~~s~~~~~~~~l~~~d~  302 (695)
T 2bkl_A          264 ---FRLLVKGVGAKYEVHAW-KDRFYVLTDEGAPRQRVFEVDP  302 (695)
T ss_dssp             ---CEEEEECSSCCEEEEEE-TTEEEEEECTTCTTCEEEEEBT
T ss_pred             ---eEEeecCCCceEEEEec-CCcEEEEECCCCCCCEEEEEeC
Confidence               45555555556666664 3334  111   2456666654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.68  E-value=3.6e-07  Score=80.25  Aligned_cols=150  Identities=11%  Similarity=0.123  Sum_probs=92.4

Q ss_pred             CCCCCCCceEEEEEeccCCCeeEEEecC-CCCcEEEEEecC------CeEEEEeCCCCCCCCCCCCCCCCcEEEecC--C
Q 020480          108 GFGCANGKVQIIQQINHDGEVNRARYMP-QNPFLIATKTVS------AEVYVFDYSKHPSKPPLDGACSPDLRLRGH--S  178 (325)
Q Consensus       108 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~~la~g~~d------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h--~  178 (325)
                      .++...++...+  ..+...+..+.|+| ++ ..|+..+.+      ..|.+|++..        +.   ...+..+  .
T Consensus       172 ~~d~~~g~~~~~--~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~--------~~---~~~l~~~~~~  237 (396)
T 3c5m_A          172 KVDIETGELEVI--HQDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDG--------SN---VRKIKEHAEG  237 (396)
T ss_dssp             EEETTTCCEEEE--EEESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTS--------CC---CEESSCCCTT
T ss_pred             EEECCCCcEEee--ccCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCC--------Cc---eeEeeccCCC
Confidence            344344444332  35677889999999 66 555554443      3688888765        11   2223223  2


Q ss_pred             CceEEEEecCCCCCeEEEEeCC-----CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeec-CCCcEEEEEe-----
Q 020480          179 TEGYGLSWSKFKEGHLLSGSDD-----AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL-RHEYLFGSVG-----  247 (325)
Q Consensus       179 ~~v~~l~~~p~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~s~~-----  247 (325)
                      ..+..+.|+|++. .|+.++.+     +.|++||+.++..    ..+..+.   . .. +.|+| ++. ++++++     
T Consensus       238 ~~~~~~~~spdg~-~l~~~~~~~~~~~~~l~~~d~~~g~~----~~l~~~~---~-~~-~~~s~~dg~-~l~~~~~~~p~  306 (396)
T 3c5m_A          238 ESCTHEFWIPDGS-AMAYVSYFKGQTDRVIYKANPETLEN----EEVMVMP---P-CS-HLMSNFDGS-LMVGDGCDAPV  306 (396)
T ss_dssp             EEEEEEEECTTSS-CEEEEEEETTTCCEEEEEECTTTCCE----EEEEECC---S-EE-EEEECSSSS-EEEEEECCC--
T ss_pred             ccccceEECCCCC-EEEEEecCCCCccceEEEEECCCCCe----EEeeeCC---C-CC-CCccCCCCc-eEEEecCCcce
Confidence            3578899999998 55555433     4499999987532    1122121   1 23 88999 885 666544     


Q ss_pred             -----------cCCcEEEEEccCCCCCCCeeEeeccCC-----------CeeEEEeCCCCC
Q 020480          248 -----------DDQYLLIWDLRTPSVSKPVQSVVAHQS-----------EVGVSILNASFR  286 (325)
Q Consensus       248 -----------~dg~i~iwd~~~~~~~~~~~~~~~h~~-----------~v~~i~~~p~~~  286 (325)
                                 .++.|++||+.++..    ..+..+..           .+..++|+|+|+
T Consensus       307 ~~~~~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~  363 (396)
T 3c5m_A          307 DVADADSYNIENDPFLYVLNTKAKSA----QKLCKHSTSWDVLDGDRQITHPHPSFTPNDD  363 (396)
T ss_dssp             --------CCCCCCEEEEEETTTTBC----CEEEECCCCCCCBTTBSSTTCCCCEECTTSS
T ss_pred             eeccccccccCCCCcEEEEecccCce----EEccCCCCccccccccccCCCCCceEccCCC
Confidence                       347899999987762    33444443           256789999997

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.67  E-value=2.7e-06  Score=78.70  Aligned_cols=165  Identities=11%  Similarity=0.017  Sum_probs=113.4

Q ss_pred             EEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEec----CCCCCeE
Q 020480          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS----KFKEGHL  194 (325)
Q Consensus       119 ~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----p~~~~~l  194 (325)
                      +..+.....+..+.|+|++ +++++++.++.|.+||+..        ...+.+..+... .....++|+    |++..++
T Consensus       190 ~~~i~~g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~--------~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~  259 (567)
T 1qks_A          190 KTVLDTGYAVHISRLSASG-RYLFVIGRDGKVNMIDLWM--------KEPTTVAEIKIG-SEARSIETSKMEGWEDKYAI  259 (567)
T ss_dssp             EEEEECSSCEEEEEECTTS-CEEEEEETTSEEEEEETTS--------SSCCEEEEEECC-SEEEEEEECCSTTCTTTEEE
T ss_pred             EEEEeCCCCccceEECCCC-CEEEEEcCCCeEEEEECCC--------CCCcEeEEEecC-CCCceeEEccccCCCCCEEE
Confidence            3445555567799999999 6777788999999999951        113445555543 346799999    6998555


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceEeeec----------C-CccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC
Q 020480          195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKV----------H-EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS  263 (325)
Q Consensus       195 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~----------~-~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  263 (325)
                      ++...++++.++|..+.+      ++..+..          | ...+..+..+++++.++++...+|.|.++|.......
T Consensus       260 v~n~~~~~v~ViD~~t~~------~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~  333 (567)
T 1qks_A          260 AGAYWPPQYVIMDGETLE------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL  333 (567)
T ss_dssp             EEEEETTEEEEEETTTCC------EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE
T ss_pred             EEEccCCeEEEEECCCCc------EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc
Confidence            566677999999987753      3333221          1 2267788889887777778888899999999875421


Q ss_pred             CCeeEeeccCCCeeEEEeCCCCCc---cCCCCceEEeeecc
Q 020480          264 KPVQSVVAHQSEVGVSILNASFRL---SHEDTCTCTHRHSR  301 (325)
Q Consensus       264 ~~~~~~~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~~  301 (325)
                       .+..+ .......++.|+|+|++   ....+..+.++|..
T Consensus       334 -~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~  372 (567)
T 1qks_A          334 -KTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTK  372 (567)
T ss_dssp             -EEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred             -eeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECC
Confidence             12222 23456778999999994   33456677777664

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.66  E-value=1.7e-07  Score=80.60  Aligned_cols=137  Identities=10%  Similarity=0.058  Sum_probs=100.2

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~i  205 (325)
                      ..|.++.|++.+ ..++..+.++.++.|.-             .....+..+...+.+++|+|++. +++++..++.|.+
T Consensus         6 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~   70 (333)
T 2dg1_A            6 QDLPTLFYSGKS-NSAVPIISESELQTITA-------------EPWLEISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFK   70 (333)
T ss_dssp             CCCCBCCSCGGG-GCSSCCCCGGGSCEEEC-------------EEEEEEESSCCCEEEEEECTTSC-EEEEETTTCEEEE
T ss_pred             cccceeeecCCc-cceeEEeecccCccccc-------------ceeEEEeccCccccCcEECCCCC-EEEEECCCCEEEE
Confidence            457788899876 45666577788888832             22455667777889999999988 7888888999999


Q ss_pred             EeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC----CcEEEEEccCCCCCCCeeEee--ccCCCeeEE
Q 020480          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD----QYLLIWDLRTPSVSKPVQSVV--AHQSEVGVS  279 (325)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~--~h~~~v~~i  279 (325)
                      ||...+.      .......+...+.+++++|++ .++++...+    +.|.+||..+...   ...+.  .+...++++
T Consensus        71 ~d~~~~~------~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~i  140 (333)
T 2dg1_A           71 INPETKE------IKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNL---QDIIEDLSTAYCIDDM  140 (333)
T ss_dssp             ECTTTCC------EEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSC---EEEECSSSSCCCEEEE
T ss_pred             EeCCCCc------EEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEE---EEEEccCccCCcccce
Confidence            9988652      222222456779999999987 577776666    6899999887663   21221  234578999


Q ss_pred             EeCCCCCc
Q 020480          280 ILNASFRL  287 (325)
Q Consensus       280 ~~~p~~~~  287 (325)
                      +++|+|.+
T Consensus       141 ~~d~~g~l  148 (333)
T 2dg1_A          141 VFDSKGGF  148 (333)
T ss_dssp             EECTTSCE
T ss_pred             EECCCCCE
Confidence            99999986

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.65  E-value=1.4e-06  Score=72.33  Aligned_cols=152  Identities=7%  Similarity=-0.048  Sum_probs=103.3

Q ss_pred             CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      ...+.++++.+++ +++++.. ++.|.+|+...           .....+. .....+.++++++++. ++++...++.|
T Consensus        66 ~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~-----------~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i  131 (270)
T 1rwi_B           66 LYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGS-----------NNQTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRV  131 (270)
T ss_dssp             CCSCCCEEECTTC-CEEEEET-TTEEEEECTTC-----------SCCEECCCCSCSSEEEEEECTTCC-EEEEEGGGTEE
T ss_pred             cCCcceeEECCCC-CEEEEcC-CCEEEEEeCCC-----------ceEeeeecCCcCCCcceEECCCCC-EEEEECCCCEE
Confidence            3567889999988 5666655 88999999765           1122222 2235689999999887 78877788999


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCC
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNA  283 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p  283 (325)
                      .+|+......      ..........+..++++|++ +++++...++.|.+||......   ......+...+.+|++++
T Consensus       132 ~~~~~~~~~~------~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~i~~d~  201 (270)
T 1rwi_B          132 VKLAAGSKTQ------TVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQ---VVLPFTDITAPWGIAVDE  201 (270)
T ss_dssp             EEECTTCCSC------EECCCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCE---EECCCSSCCSEEEEEECT
T ss_pred             EEEECCCcee------EeeccccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCce---EeecccCCCCceEEEECC
Confidence            9997654321      11112223457889999987 5777777889999999876552   222222336688999999


Q ss_pred             CCCc--cCCCCceEEeeec
Q 020480          284 SFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       284 ~~~~--~~~~d~~~~~~~~  300 (325)
                      +|.+  +...++.+..++.
T Consensus       202 ~g~l~v~~~~~~~v~~~~~  220 (270)
T 1rwi_B          202 AGTVYVTEHNTNQVVKLLA  220 (270)
T ss_dssp             TCCEEEEETTTSCEEEECT
T ss_pred             CCCEEEEECCCCcEEEEcC
Confidence            9886  3334566777654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.65  E-value=5.6e-07  Score=76.47  Aligned_cols=157  Identities=7%  Similarity=0.040  Sum_probs=102.0

Q ss_pred             CCeeEEEecCCCCcEEEEEecC---------------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEec---
Q 020480          126 GEVNRARYMPQNPFLIATKTVS---------------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS---  187 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~d---------------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---  187 (325)
                      ..+.++++.+++ +++++...+               +.|..++...           . ...+..+......++|+   
T Consensus       117 ~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-----------~-~~~~~~~~~~~~~i~~~~~~  183 (314)
T 1pjx_A          117 QGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-----------Q-MIQVDTAFQFPNGIAVRHMN  183 (314)
T ss_dssp             BCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-----------C-EEEEEEEESSEEEEEEEECT
T ss_pred             cCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCCC-----------C-EEEeccCCCCcceEEEeccc
Confidence            357899999988 566665544               4566666432           1 22222333456889999   


Q ss_pred             -CCCCCeEEEEeCCCcEEEEeCC-CCCCCCcccceEeeecCC-ccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCC
Q 020480          188 -KFKEGHLLSGSDDAQICLWDIN-AAPKNKSLEAMQIFKVHE-GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK  264 (325)
Q Consensus       188 -p~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~-~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  264 (325)
                       |++..++++...++.|.+||+. .+.. ........+..+. ..+..+++++++ +++++...++.|.+||..+++.  
T Consensus       184 d~dg~~l~v~~~~~~~i~~~~~~~~g~~-~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~--  259 (314)
T 1pjx_A          184 DGRPYQLIVAETPTKKLWSYDIKGPAKI-ENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQP--  259 (314)
T ss_dssp             TSCEEEEEEEETTTTEEEEEEEEETTEE-EEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSC--
T ss_pred             CCCCCEEEEEECCCCeEEEEECCCCCcc-ccceEEEECCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcE--
Confidence             9886355666678999999986 2210 0001122233333 567889999987 6887777889999999886653  


Q ss_pred             CeeEeeccCCCeeEEEeCCCCC-c--cCCCCceEEeeec
Q 020480          265 PVQSVVAHQSEVGVSILNASFR-L--SHEDTCTCTHRHS  300 (325)
Q Consensus       265 ~~~~~~~h~~~v~~i~~~p~~~-~--~~~~d~~~~~~~~  300 (325)
                       +..+..+...+.+++|+|+|. +  +...++.+..++.
T Consensus       260 -~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          260 -KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             -SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             -eEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence             555555667899999999998 4  3334445555554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.61  E-value=6.4e-07  Score=78.29  Aligned_cols=90  Identities=7%  Similarity=0.075  Sum_probs=69.5

Q ss_pred             EEecCCCCCeEEEEe----------CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEE
Q 020480          184 LSWSKFKEGHLLSGS----------DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL  253 (325)
Q Consensus       184 l~~~p~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~  253 (325)
                      ++++|++..++++..          ..+.|.+||+.+.      +.+..+..+.  +.+++|+|++. ++++++. +.|.
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~------~~v~~i~~~~--p~~ia~spdg~-~l~v~n~-~~v~  328 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK------QRVARIPGRD--ALSMTIDQQRN-LMLTLDG-GNVN  328 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT------EEEEEEECTT--CCEEEEETTTT-EEEEECS-SCEE
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC------cEEEEEecCC--eeEEEECCCCC-EEEEeCC-CeEE
Confidence            788999874444433          1358999999887      4566676666  99999999985 6667666 9999


Q ss_pred             EEEccCC--CCCCCeeEeeccCCCeeEEEeCCCCC
Q 020480          254 IWDLRTP--SVSKPVQSVVAHQSEVGVSILNASFR  286 (325)
Q Consensus       254 iwd~~~~--~~~~~~~~~~~h~~~v~~i~~~p~~~  286 (325)
                      +||..++  +   .+..+..+......++++|+|.
T Consensus       329 v~D~~t~~l~---~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          329 VYDISQPEPK---LLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEECSSSSCE---EEEEETTSCSSEEEEEECCCSC
T ss_pred             EEECCCCcce---eeEEeccCCCCcEEEEecCCCC
Confidence            9999998  6   3666666777889999999985

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.60  E-value=1.3e-05  Score=69.86  Aligned_cols=64  Identities=9%  Similarity=0.062  Sum_probs=48.2

Q ss_pred             EEeecCCCcEEEEEe----------cCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480          233 VAWHLRHEYLFGSVG----------DDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       233 v~~~p~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                      ++++|++..++++..          ..+.|.+||+.+.+.   +.++..+.  +.+|+|+|+|++  +++. +++.+||.
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~---v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~  332 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR---VARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDI  332 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE---EEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE---EEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence            678898765555544          134799999999874   77777666  999999999984  4444 89999986


Q ss_pred             ce
Q 020480          301 RY  302 (325)
Q Consensus       301 ~~  302 (325)
                      ..
T Consensus       333 ~t  334 (361)
T 2oiz_A          333 SQ  334 (361)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.59  E-value=2.4e-06  Score=72.17  Aligned_cols=159  Identities=9%  Similarity=-0.085  Sum_probs=101.9

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ec-CCCceEEEEecCCCCCeEEEE---
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RG-HSTEGYGLSWSKFKEGHLLSG---  197 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~l~~~p~~~~~l~s~---  197 (325)
                      .+...+.++++++++ +++++...++.|.+|+..+        +....+... .+ ....+.+++++|++. ++++.   
T Consensus        66 ~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~--------g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~  135 (296)
T 3e5z_A           66 HPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPG--------GEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTY  135 (296)
T ss_dssp             SSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTT--------CCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSH
T ss_pred             CCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCC--------CcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCcc
Confidence            466778999999988 5777766678999999865        222111100 01 123456899999998 77773   


Q ss_pred             -e-------------CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC
Q 020480          198 -S-------------DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS  263 (325)
Q Consensus       198 -s-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  263 (325)
                       +             ..+.|..++.. +       .+..+..+......++|+|++. .+++.+.++.|.+||+......
T Consensus       136 g~~~~~~~~~~~~~~~~~~l~~~~~~-g-------~~~~~~~~~~~~~gi~~s~dg~-~lv~~~~~~~i~~~~~~~~g~~  206 (296)
T 3e5z_A          136 GIDKPEEGYGGEMELPGRWVFRLAPD-G-------TLSAPIRDRVKPNGLAFLPSGN-LLVSDTGDNATHRYCLNARGET  206 (296)
T ss_dssp             HHHCGGGSSCCCCCSSSCEEEEECTT-S-------CEEEEECCCSSEEEEEECTTSC-EEEEETTTTEEEEEEECSSSCE
T ss_pred             ccccccccccccccCCCcEEEEECCC-C-------CEEEeecCCCCCccEEECCCCC-EEEEeCCCCeEEEEEECCCCcC
Confidence             2             13456666554 2       1233445556788999999985 5588888899999999732210


Q ss_pred             -CCeeEeeccCCCeeEEEeCCCCCccCCCCceEEeeec
Q 020480          264 -KPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHS  300 (325)
Q Consensus       264 -~~~~~~~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~  300 (325)
                       .....+..+...+.+++++++|.+..+.++.+..|+.
T Consensus       207 ~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~~  244 (296)
T 3e5z_A          207 EYQGVHFTVEPGKTDGLRVDAGGLIWASAGDGVHVLTP  244 (296)
T ss_dssp             EEEEEEECCSSSCCCSEEEBTTSCEEEEETTEEEEECT
T ss_pred             cCCCeEeeCCCCCCCeEEECCCCCEEEEcCCeEEEECC
Confidence             0012223345567789999999973222677777764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.59  E-value=6.3e-06  Score=69.17  Aligned_cols=154  Identities=7%  Similarity=-0.063  Sum_probs=103.5

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      .+...+.++++.++| +++++...++.|.+|+...          ......+..+...+.++++.+++. ++++...++.
T Consensus        12 ~~~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~~----------~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~   79 (299)
T 2z2n_A           12 NQDTGPYGITVSDKG-KVWITQHKANMISCINLDG----------KITEYPLPTPDAKVMCLTISSDGE-VWFTENAANK   79 (299)
T ss_dssp             SSSCCEEEEEECTTS-CEEEEETTTTEEEEECTTC----------CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTE
T ss_pred             CcCCCccceEECCCC-CEEEEecCCCcEEEEcCCC----------CeEEecCCcccCceeeEEECCCCC-EEEeCCCCCe
Confidence            345678999999988 5666655578999998763          110111223456789999999987 7777777889


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe--eccCCCeeEEE
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VAHQSEVGVSI  280 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~i~  280 (325)
                      |..||....      ............+..+++.+++ .++++...++.|..||. ++.    +..+  ......+.+++
T Consensus        80 i~~~~~~g~------~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~----~~~~~~~~~~~~~~~i~  147 (299)
T 2z2n_A           80 IGRITKKGI------IKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGK----IREYELPNKGSYPSFIT  147 (299)
T ss_dssp             EEEECTTSC------EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCC----EEEEECSSTTCCEEEEE
T ss_pred             EEEECCCCc------EEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCC----EEEecCCCCCCCCceEE
Confidence            999997621      1111112244578899999987 67777777889999998 444    2222  23445789999


Q ss_pred             eCCCCCc--cCCCCceEEeeec
Q 020480          281 LNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       281 ~~p~~~~--~~~~d~~~~~~~~  300 (325)
                      ++++|.+  +....+.+..++.
T Consensus       148 ~~~~g~l~v~~~~~~~i~~~~~  169 (299)
T 2z2n_A          148 LGSDNALWFTENQNNAIGRITE  169 (299)
T ss_dssp             ECTTSCEEEEETTTTEEEEECT
T ss_pred             EcCCCCEEEEeCCCCEEEEEcC
Confidence            9999886  2333455555543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.57  E-value=4.1e-06  Score=70.25  Aligned_cols=154  Identities=6%  Similarity=-0.075  Sum_probs=105.8

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-CCceEEEEecCCCCCeEEEEeC-CCcE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-STEGYGLSWSKFKEGHLLSGSD-DAQI  203 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s~-dg~i  203 (325)
                      ..+.++.+.|+| +++++  .++.|..||...           +.+..+..+ ...+.++.+.+++. .+++.+. ++.|
T Consensus        37 ~~~~~~~~~pdG-~ilvs--~~~~V~~~d~~G-----------~~~W~~~~~~~~~~~~~~~~~dG~-~lv~~~~~~~~v  101 (276)
T 3no2_A           37 WECNSVAATKAG-EILFS--YSKGAKMITRDG-----------RELWNIAAPAGCEMQTARILPDGN-ALVAWCGHPSTI  101 (276)
T ss_dssp             CCCCEEEECTTS-CEEEE--CBSEEEEECTTS-----------CEEEEEECCTTCEEEEEEECTTSC-EEEEEESTTEEE
T ss_pred             CCCcCeEECCCC-CEEEe--CCCCEEEECCCC-----------CEEEEEcCCCCccccccEECCCCC-EEEEecCCCCEE
Confidence            478999999998 67773  477899999832           446666654 35788999999998 7888776 7778


Q ss_pred             EEEeCCCCCCCCcccceEeee------cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480          204 CLWDINAAPKNKSLEAMQIFK------VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG  277 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  277 (325)
                      ..+|.. ++      .+..+.      .+......++..+++ +++++...++.|..||.. ++.   +..+... ..+.
T Consensus       102 ~~vd~~-Gk------~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~-G~~---~w~~~~~-~~~~  168 (276)
T 3no2_A          102 LEVNMK-GE------VLSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEVREIAPN-GQL---LNSVKLS-GTPF  168 (276)
T ss_dssp             EEECTT-SC------EEEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEEEEECTT-SCE---EEEEECS-SCCC
T ss_pred             EEEeCC-CC------EEEEEeccCCCCcccccccCceECCCC-CEEEEecCCCEEEEECCC-CCE---EEEEECC-CCcc
Confidence            777763 32      233322      111234456778887 688899999999999987 663   6776543 4566


Q ss_pred             EEEeCCCCCc--cCCCCceEEeeecc--eeeecc
Q 020480          278 VSILNASFRL--SHEDTCTCTHRHSR--YLLYKF  307 (325)
Q Consensus       278 ~i~~~p~~~~--~~~~d~~~~~~~~~--~~~~~~  307 (325)
                      ++.+.++|.+  .+...+.+..++..  ...|.+
T Consensus       169 ~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~  202 (276)
T 3no2_A          169 SSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV  202 (276)
T ss_dssp             EEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred             ceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence            7888888874  34445556665543  345555

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.54  E-value=8.5e-08  Score=84.28  Aligned_cols=137  Identities=10%  Similarity=0.096  Sum_probs=87.2

Q ss_pred             CCeeEEEecCCCCcEEEEEe-cC--CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceE-EEEecCCCCCeEEEEeCCC
Q 020480          126 GEVNRARYMPQNPFLIATKT-VS--AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGY-GLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~-~d--g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~p~~~~~l~s~s~dg  201 (325)
                      ..+..++|+|+|. .|+... .+  ..|.+|++..        +.   ...+..+..... .+.|+|++. .|+.++.++
T Consensus        36 ~~~~~~~~SpdG~-~l~~~~~~~g~~~l~~~d~~~--------~~---~~~l~~~~~~~~~~~~~spdg~-~l~~~~~~~  102 (396)
T 3c5m_A           36 NYFYQKCFTQDGK-KLLFAGDFDGNRNYYLLNLET--------QQ---AVQLTEGKGDNTFGGFISTDER-AFFYVKNEL  102 (396)
T ss_dssp             CCTTSCCBCTTSC-EEEEEECTTSSCEEEEEETTT--------TE---EEECCCSSCBCTTTCEECTTSS-EEEEEETTT
T ss_pred             eeeecCcCCCCCC-EEEEEEecCCCceEEEEECCC--------Cc---EEEeecCCCCccccceECCCCC-EEEEEEcCC
Confidence            3477889999994 555543 33  3788888876        21   223333333333 378999998 788888899


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecCCccEEE-------------------EEeecCCCcEEEEE-----ecCCcEEEEEc
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVED-------------------VAWHLRHEYLFGSV-----GDDQYLLIWDL  257 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~-------------------v~~~p~~~~~l~s~-----~~dg~i~iwd~  257 (325)
                      .|++||+..+..      ......+......                   +.|+|++. .++.+     ..+..|++||+
T Consensus       103 ~l~~~d~~~~~~------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~~~l~~~d~  175 (396)
T 3c5m_A          103 NLMKVDLETLEE------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPTCRLIKVDI  175 (396)
T ss_dssp             EEEEEETTTCCE------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCCEEEEEEET
T ss_pred             cEEEEECCCCCc------EEEEecccccCCCCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCcceEEEEEC
Confidence            999999987632      2222222222222                   34567653 33322     45678999999


Q ss_pred             cCCCCCCCeeEeeccCCCeeEEEeCC-CCC
Q 020480          258 RTPSVSKPVQSVVAHQSEVGVSILNA-SFR  286 (325)
Q Consensus       258 ~~~~~~~~~~~~~~h~~~v~~i~~~p-~~~  286 (325)
                      .+++    ...+..+...+..+.|+| ++.
T Consensus       176 ~~g~----~~~~~~~~~~~~~~~~sp~dg~  201 (396)
T 3c5m_A          176 ETGE----LEVIHQDTAWLGHPIYRPFDDS  201 (396)
T ss_dssp             TTCC----EEEEEEESSCEEEEEEETTEEE
T ss_pred             CCCc----EEeeccCCcccccceECCCCCC
Confidence            8876    344445677899999999 676

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.54  E-value=1.5e-06  Score=74.90  Aligned_cols=131  Identities=14%  Similarity=0.175  Sum_probs=82.4

Q ss_pred             CCeeEEEecCCCCcEEEEEecC---C--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC-
Q 020480          126 GEVNRARYMPQNPFLIATKTVS---A--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-  199 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~d---g--~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-  199 (325)
                      ..+..++|+|+| +.||.++.+   +  .|.+|++..        +  . ...+..+.. +..+.|+|++. .|+.++. 
T Consensus        59 ~~~~~~~~SpDg-~~la~~~~~~~~~~~~l~~~~~~~--------g--~-~~~l~~~~~-~~~~~wspdg~-~l~~~~~~  124 (347)
T 2gop_A           59 ENATMPRISPDG-KKIAFMRANEEKKVSEIWVADLET--------L--S-SKKILEAKN-IRSLEWNEDSR-KLLIVGFK  124 (347)
T ss_dssp             ESCEEEEECTTS-SEEEEEEEETTTTEEEEEEEETTT--------T--E-EEEEEEESE-EEEEEECTTSS-EEEEEEEC
T ss_pred             ccCCCeEECCCC-CEEEEEEeccCCCcceEEEEECCC--------C--c-eEEEEcCCC-ccceeECCCCC-EEEEEEcc
Confidence            567889999999 566665543   3  477777765        2  2 222332333 89999999998 5666653 


Q ss_pred             --------------------------CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC---
Q 020480          200 --------------------------DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ---  250 (325)
Q Consensus       200 --------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg---  250 (325)
                                                ...|.+||+..+.      .+..+.. . .+..++|+|++  +++++..++   
T Consensus       125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~------~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~  194 (347)
T 2gop_A          125 RREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE------VIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIP  194 (347)
T ss_dssp             CCC---------CCCC---------CEEEEEEEETTTTE------EEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSC
T ss_pred             CCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe------EEeeecC-C-CcccccCCCCe--EEEEEecccccc
Confidence                                      2568999998652      2233333 3 67889999987  666665542   


Q ss_pred             ----cEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc
Q 020480          251 ----YLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL  287 (325)
Q Consensus       251 ----~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~  287 (325)
                          ...||.+.+++    ...+..+ ..+..+  +|+|+.
T Consensus       195 ~~~~~~~l~~~d~~~----~~~l~~~-~~~~~~--spdg~~  228 (347)
T 2gop_A          195 QYFKFWDIYIWEDGK----EEKMFEK-VSFYAV--DSDGER  228 (347)
T ss_dssp             CSSCCEEEEEEETTE----EEEEEEE-ESEEEE--EECSSC
T ss_pred             cccccccEEEeCCCc----eEEeccC-cceeeE--CCCCCE
Confidence                44566555332    4444444 445444  899873

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.50  E-value=1.6e-05  Score=66.66  Aligned_cols=153  Identities=7%  Similarity=-0.080  Sum_probs=103.5

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      +...+.++++.+++ .++++...++.|..|+...         .. ....+......+.++++.+++. ++++...++.|
T Consensus        55 ~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g---------~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i  122 (299)
T 2z2n_A           55 PDAKVMCLTISSDG-EVWFTENAANKIGRITKKG---------II-KEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRI  122 (299)
T ss_dssp             TTCCEEEEEECTTS-CEEEEETTTTEEEEECTTS---------CE-EEEECSSTTCCEEEEEECTTSC-EEEEETTTTEE
T ss_pred             ccCceeeEEECCCC-CEEEeCCCCCeEEEECCCC---------cE-EEEeCCCcCCCceeeEECCCCC-EEEEecCCceE
Confidence            45678899999988 5777766688999998753         11 1111223455789999999887 77777778899


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe--eccCCCeeEEEe
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VAHQSEVGVSIL  281 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~i~~  281 (325)
                      .+||. .+..     ...........+..+++.+++ .++++...++.|..||. +++    +..+  ......+.++++
T Consensus       123 ~~~d~-~g~~-----~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~----~~~~~~~~~~~~~~~i~~  190 (299)
T 2z2n_A          123 GRITD-DGKI-----REYELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGD----ITEFKIPTPASGPVGITK  190 (299)
T ss_dssp             EEECT-TCCE-----EEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCC----EEEEECSSTTCCEEEEEE
T ss_pred             EEECC-CCCE-----EEecCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCc----EEEeeCCCCCCcceeEEE
Confidence            99998 3321     111122234568899999987 67777777889999998 544    3332  233456889999


Q ss_pred             CCCCCc--cCCCCceEEeeec
Q 020480          282 NASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       282 ~p~~~~--~~~~d~~~~~~~~  300 (325)
                      +++|.+  +....+.+..++.
T Consensus       191 ~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          191 GNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             CTTSSEEEEETTTTEEEEECT
T ss_pred             CCCCCEEEEccCCceEEEECC
Confidence            999886  2223556666654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.45  E-value=5e-06  Score=69.73  Aligned_cols=144  Identities=8%  Similarity=-0.079  Sum_probs=99.8

Q ss_pred             cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcc
Q 020480          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL  217 (325)
Q Consensus       139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  217 (325)
                      ++|++++.++.|.+||..+          .+.+.++..+. ..+.++.+.|+++ +++  +.++.|..||. ++      
T Consensus         6 ~~lv~~~~~~~v~~~d~~t----------G~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G------   65 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDT----------KEIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DG------   65 (276)
T ss_dssp             EEEEECTTCSEEEEEETTT----------TEEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TS------
T ss_pred             cEEEeeCCCCEEEEEECCC----------CeEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CC------
Confidence            6899999999999999866          34467777665 4788999999998 777  45788999998 55      


Q ss_pred             cceEeeecC-CccEEEEEeecCCCcEEEEEec-CCcEEEEEccCCCCCCCeeEee------ccCCCeeEEEeCCCCCc--
Q 020480          218 EAMQIFKVH-EGVVEDVAWHLRHEYLFGSVGD-DQYLLIWDLRTPSVSKPVQSVV------AHQSEVGVSILNASFRL--  287 (325)
Q Consensus       218 ~~~~~~~~~-~~~v~~v~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~------~h~~~v~~i~~~p~~~~--  287 (325)
                      ..+..+..+ ...+.++.+.|++ +++++.+. ++.|..+|. .++   .+..+.      .+......+++.++|.+  
T Consensus        66 ~~~W~~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk---~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv  140 (276)
T 3no2_A           66 RELWNIAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGE---VLSKTEFETGIERPHAQFRQINKNKKGNYLV  140 (276)
T ss_dssp             CEEEEEECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSC---EEEEEEECCSCSSGGGSCSCCEECTTSCEEE
T ss_pred             CEEEEEcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCC---EEEEEeccCCCCcccccccCceECCCCCEEE
Confidence            345666654 3578889999988 57777766 777777775 444   244442      12224556678888875  


Q ss_pred             cCCCCceEEeeecc-eeeecc
Q 020480          288 SHEDTCTCTHRHSR-YLLYKF  307 (325)
Q Consensus       288 ~~~~d~~~~~~~~~-~~~~~~  307 (325)
                      +...++.+..++.. ...|.|
T Consensus       141 ~~~~~~~v~~~d~~G~~~w~~  161 (276)
T 3no2_A          141 PLFATSEVREIAPNGQLLNSV  161 (276)
T ss_dssp             EETTTTEEEEECTTSCEEEEE
T ss_pred             EecCCCEEEEECCCCCEEEEE
Confidence            45567777777643 234444

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.44  E-value=7.1e-06  Score=69.43  Aligned_cols=145  Identities=10%  Similarity=0.083  Sum_probs=94.5

Q ss_pred             CCeeEEEecCCCCcEEEEEecC---------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEE
Q 020480          126 GEVNRARYMPQNPFLIATKTVS---------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~d---------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  196 (325)
                      ..++.+++.|+| +++++....         ..-.||.+...       +  . ...+..+......++|+|++..++++
T Consensus        98 ~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-------g--~-~~~~~~~~~~pngi~~spdg~~lyv~  166 (297)
T 3g4e_A           98 NRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPD-------H--H-VKKYFDQVDISNGLDWSLDHKIFYYI  166 (297)
T ss_dssp             EEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTT-------S--C-EEEEEEEESBEEEEEECTTSCEEEEE
T ss_pred             CCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECC-------C--C-EEEEeeccccccceEEcCCCCEEEEe
Confidence            347889999998 465543221         23445554430       1  1 22233333456899999999855667


Q ss_pred             EeCCCcEEEEeCC--CCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC
Q 020480          197 GSDDAQICLWDIN--AAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS  274 (325)
Q Consensus       197 ~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~  274 (325)
                      .+.++.|.+||+.  .+.. ........+..+......+++.++| ++.++....+.|..||..+++.   +..+..+..
T Consensus       167 ~~~~~~i~~~~~d~~~G~~-~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~---~~~i~~p~~  241 (297)
T 3g4e_A          167 DSLSYSVDAFDYDLQTGQI-SNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKR---LQTVKLPVD  241 (297)
T ss_dssp             EGGGTEEEEEEECTTTCCE-EEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCE---EEEEECSSS
T ss_pred             cCCCCcEEEEeccCCCCcc-cCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceE---EEEEECCCC
Confidence            7778999999974  3211 0001122233334567889999987 6888888888999999987773   666666667


Q ss_pred             CeeEEEeC-CCCC
Q 020480          275 EVGVSILN-ASFR  286 (325)
Q Consensus       275 ~v~~i~~~-p~~~  286 (325)
                      .+++++|. |++.
T Consensus       242 ~~t~~~f~g~d~~  254 (297)
T 3g4e_A          242 KTTSCCFGGKNYS  254 (297)
T ss_dssp             BEEEEEEESGGGC
T ss_pred             CceEEEEeCCCCC
Confidence            89999998 7765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.44  E-value=3.1e-05  Score=71.65  Aligned_cols=140  Identities=11%  Similarity=0.007  Sum_probs=98.7

Q ss_pred             cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCC--CCCCCCc
Q 020480          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDIN--AAPKNKS  216 (325)
Q Consensus       139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~--~~~~~~~  216 (325)
                      .++++...++.|.++|..+          .+.+.++.. ...+..+.++|++. ++++++.|+.|.+||+.  +.     
T Consensus       168 ~~~V~~~~~~~V~viD~~t----------~~v~~~i~~-g~~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~~t~-----  230 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGST----------YEIKTVLDT-GYAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEP-----  230 (567)
T ss_dssp             EEEEEETTTTEEEEEETTT----------CCEEEEEEC-SSCEEEEEECTTSC-EEEEEETTSEEEEEETTSSSC-----
T ss_pred             eEEEEeCCCCeEEEEECCC----------CeEEEEEeC-CCCccceEECCCCC-EEEEEcCCCeEEEEECCCCCC-----
Confidence            5677778899999999987          344555543 34678999999999 78888999999999995  43     


Q ss_pred             ccceEeeecCCccEEEEEee----cCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeec----------cCC-CeeEEEe
Q 020480          217 LEAMQIFKVHEGVVEDVAWH----LRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA----------HQS-EVGVSIL  281 (325)
Q Consensus       217 ~~~~~~~~~~~~~v~~v~~~----p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------h~~-~v~~i~~  281 (325)
                       ..+..+.. ......++|+    |+|..++++...++.|.++|..+.+.   +..+..          |.. .+..+..
T Consensus       231 -~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~---~~~i~~~~~~~~~~~~~p~~rva~i~~  305 (567)
T 1qks_A          231 -TTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP---KKIQSTRGMTYDEQEYHPEPRVAAILA  305 (567)
T ss_dssp             -CEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE---EEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred             -cEeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE---EEEEeccccccccccccCCCceEEEEE
Confidence             23444443 3346789999    69876666777889999999888773   555431          222 5778888


Q ss_pred             CCCCCc---cCCCCceEEeeec
Q 020480          282 NASFRL---SHEDTCTCTHRHS  300 (325)
Q Consensus       282 ~p~~~~---~~~~d~~~~~~~~  300 (325)
                      ++++..   .....+.+.+.+.
T Consensus       306 s~~~~~~vv~~~~~g~v~~vd~  327 (567)
T 1qks_A          306 SHYRPEFIVNVKETGKILLVDY  327 (567)
T ss_dssp             CSSSSEEEEEETTTTEEEEEET
T ss_pred             cCCCCEEEEEecCCCeEEEEec
Confidence            887552   3344556655554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.39  E-value=1.4e-05  Score=76.70  Aligned_cols=154  Identities=8%  Similarity=-0.017  Sum_probs=89.1

Q ss_pred             eeEEEecCCCCcEEEEEecCC--------------eEEEEeCCCCCCCCCCCCCCCCcEEEe--cCCCceEEEEecCCCC
Q 020480          128 VNRARYMPQNPFLIATKTVSA--------------EVYVFDYSKHPSKPPLDGACSPDLRLR--GHSTEGYGLSWSKFKE  191 (325)
Q Consensus       128 v~~v~~~~~~~~~la~g~~dg--------------~v~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~  191 (325)
                      +..++|+|+ . .|+.++.++              .|++|++.+        +.......+.  .+...+.++.|+|+|.
T Consensus       211 ~~~~~wspD-~-~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt--------~~~~~~lv~~~~~~~~~~~~~~~SpDG~  280 (741)
T 1yr2_A          211 FSGLAWLGN-D-ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGT--------PQSADQPVFATPELPKRGHGASVSSDGR  280 (741)
T ss_dssp             SCCCEESTT-S-EEEEEECCCC--------CCCCCEEEEEETTS--------CGGGCEEEECCTTCTTCEEEEEECTTSC
T ss_pred             eccEEEECC-C-EEEEEEecCcccccccccCCCCCEEEEEECCC--------CchhCEEEeccCCCCeEEEEEEECCCCC
Confidence            357899998 4 455545443              388999865        2211222333  2334588999999998


Q ss_pred             CeEEEEeCC-----CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec----CCcEEEEEccCCC-
Q 020480          192 GHLLSGSDD-----AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD----DQYLLIWDLRTPS-  261 (325)
Q Consensus       192 ~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~----dg~i~iwd~~~~~-  261 (325)
                       +|+..+.+     ..|++||+..+..    .+...+..+...+.... +|++. .|+..+.    .+.|.+||+.+.. 
T Consensus       281 -~l~~~~~~~~~~~~~l~~~d~~~~~~----~~~~~l~~~~~~~~~~~-~~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~  353 (741)
T 1yr2_A          281 -WVVITSSEGTDPVNTVHVARVTNGKI----GPVTALIPDLKAQWDFV-DGVGD-QLWFVSGDGAPLKKIVRVDLSGSTP  353 (741)
T ss_dssp             -EEEEEEECTTCSCCEEEEEEEETTEE----CCCEEEECSSSSCEEEE-EEETT-EEEEEECTTCTTCEEEEEECSSSSC
T ss_pred             -EEEEEEEccCCCcceEEEEECCCCCC----cccEEecCCCCceEEEE-eccCC-EEEEEECCCCCCCEEEEEeCCCCcc
Confidence             56655543     3899999876511    00233444444444443 47775 4444444    3459999987742 


Q ss_pred             CCCCeeEeeccCCCeeEEEeCCCCCc-cCCCCceEEeeec
Q 020480          262 VSKPVQSVVAHQSEVGVSILNASFRL-SHEDTCTCTHRHS  300 (325)
Q Consensus       262 ~~~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~  300 (325)
                      .  ....+..+...+.+++|+.+..+ +...++..++|..
T Consensus       354 ~--~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          354 R--FDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             E--EEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEE
T ss_pred             c--cEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEE
Confidence            1  12233444455677888733222 5556777777644

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.35  E-value=0.00014  Score=62.28  Aligned_cols=140  Identities=9%  Similarity=0.048  Sum_probs=89.4

Q ss_pred             CeeEEEecCCCCcEEEEEec------CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          127 EVNRARYMPQNPFLIATKTV------SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      .++.+.+.|+| +++++...      .+.|..++ ..         .   ...+..+......++|+|++..++++.+.+
T Consensus       135 ~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~-~g---------~---~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~  200 (326)
T 2ghs_A          135 RSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA-KG---------K---VTKLFADISIPNSICFSPDGTTGYFVDTKV  200 (326)
T ss_dssp             EEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE-TT---------E---EEEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred             CCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe-CC---------c---EEEeeCCCcccCCeEEcCCCCEEEEEECCC
Confidence            57889999998 45554332      24566666 22         1   122222334567899999998445666677


Q ss_pred             CcEEEEeCC--CC-CCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480          201 AQICLWDIN--AA-PKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG  277 (325)
Q Consensus       201 g~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  277 (325)
                      +.|.+||+.  .+ .... ......+.........+++.+++ +++++...++.|..||. .++   .+..+..+...+.
T Consensus       201 ~~I~~~d~~~~~Gl~~~~-~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~-~g~---~~~~i~~~~~~~~  274 (326)
T 2ghs_A          201 NRLMRVPLDARTGLPTGK-AEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDT-DGN---HIARYEVPGKQTT  274 (326)
T ss_dssp             CEEEEEEBCTTTCCBSSC-CEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECT-TCC---EEEEEECSCSBEE
T ss_pred             CEEEEEEcccccCCcccC-ceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECC-CCC---EEEEEECCCCCcE
Confidence            899999986  33 2110 01122222334567789999987 67777667788999998 444   2566655566799


Q ss_pred             EEEeC-CCCC
Q 020480          278 VSILN-ASFR  286 (325)
Q Consensus       278 ~i~~~-p~~~  286 (325)
                      +++|. |++.
T Consensus       275 ~~af~g~d~~  284 (326)
T 2ghs_A          275 CPAFIGPDAS  284 (326)
T ss_dssp             EEEEESTTSC
T ss_pred             EEEEecCCCC
Confidence            99998 7765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.32  E-value=6.4e-05  Score=72.01  Aligned_cols=157  Identities=13%  Similarity=0.046  Sum_probs=97.6

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecC-----CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVS-----AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      +...+..+.|+|+| +.|+..+.+     ..|++||+..        +.......+..+...+.... +|++. .|+..+
T Consensus       266 ~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~--------~~~~~~~~l~~~~~~~~~~~-~~dg~-~l~~~s  334 (741)
T 1yr2_A          266 LPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTN--------GKIGPVTALIPDLKAQWDFV-DGVGD-QLWFVS  334 (741)
T ss_dssp             CTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEET--------TEECCCEEEECSSSSCEEEE-EEETT-EEEEEE
T ss_pred             CCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCC--------CCCcccEEecCCCCceEEEE-eccCC-EEEEEE
Confidence            33457899999999 566655544     3899999876        21121345555555555553 47887 566655


Q ss_pred             C----CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC-CCCCCCeeEeec-c
Q 020480          199 D----DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT-PSVSKPVQSVVA-H  272 (325)
Q Consensus       199 ~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~-h  272 (325)
                      .    ++.|.+||+..+. .   .....+..+...+..++|.  +..++++...|+..+||.+.. +.   ....+.. +
T Consensus       335 ~~~~~~~~l~~~d~~~~~-~---~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~---~~~~l~~~~  405 (741)
T 1yr2_A          335 GDGAPLKKIVRVDLSGST-P---RFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGK---PAGAVSLPG  405 (741)
T ss_dssp             CTTCTTCEEEEEECSSSS-C---EEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSC---EEEECBCSS
T ss_pred             CCCCCCCEEEEEeCCCCc-c---ccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCC---ceeeccCCC
Confidence            4    3459999987642 0   1122233444556677887  346888999999988887662 33   2444443 3


Q ss_pred             CCCeeEEEeCCCCCc------cCCCCceEEeeec
Q 020480          273 QSEVGVSILNASFRL------SHEDTCTCTHRHS  300 (325)
Q Consensus       273 ~~~v~~i~~~p~~~~------~~~~d~~~~~~~~  300 (325)
                      ...+..++++|++..      +....+++..|++
T Consensus       406 ~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          406 IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred             CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            567889999998762      2233456666654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.28  E-value=2.3e-05  Score=67.30  Aligned_cols=154  Identities=6%  Similarity=-0.059  Sum_probs=99.0

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-----CceEEEEecCCCCCeEE
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-----TEGYGLSWSKFKEGHLL  195 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~~p~~~~~l~  195 (325)
                      .+........+++++++ .++++...++.|.+||..+          .+....+....     .....+++ . +..+++
T Consensus        79 ~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t----------~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv  145 (328)
T 3dsm_A           79 RITGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKT----------YEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYV  145 (328)
T ss_dssp             EEECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTT----------TEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEE
T ss_pred             EcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCC----------CeEEEEEEcCCccccCCCcceEEE-E-CCEEEE
Confidence            34555778899998887 6666655789999999886          22233333221     14556777 3 442445


Q ss_pred             EEe-CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC----------CcEEEEEccCCCCCC
Q 020480          196 SGS-DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD----------QYLLIWDLRTPSVSK  264 (325)
Q Consensus       196 s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d----------g~i~iwd~~~~~~~~  264 (325)
                      +.. .++.|.++|+.+++      ....+.. ......++++|++ .+++++..+          +.|.++|..+.+.  
T Consensus       146 ~~~~~~~~v~viD~~t~~------~~~~i~~-g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v--  215 (328)
T 3dsm_A          146 NCWSYQNRILKIDTETDK------VVDELTI-GIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTV--  215 (328)
T ss_dssp             EECTTCCEEEEEETTTTE------EEEEEEC-SSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE--
T ss_pred             EcCCCCCEEEEEECCCCe------EEEEEEc-CCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeE--
Confidence            444 48999999998763      3333332 2345678899987 566666554          7899999988763  


Q ss_pred             CeeEeecc-CCCeeEEEeCCCCCc--cCCCCceEEeeec
Q 020480          265 PVQSVVAH-QSEVGVSILNASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       265 ~~~~~~~h-~~~v~~i~~~p~~~~--~~~~d~~~~~~~~  300 (325)
                       ...+... ......++|+|++..  .+..  .+..++.
T Consensus       216 -~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~  251 (328)
T 3dsm_A          216 -EKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPV  251 (328)
T ss_dssp             -EEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEET
T ss_pred             -EEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEEC
Confidence             4444322 346899999998773  2222  5656654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.27  E-value=9.9e-05  Score=61.77  Aligned_cols=152  Identities=7%  Similarity=-0.043  Sum_probs=102.1

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      ....+.++.+.+++ +++++...++.|.+|+...         ... ...+......+.++++.+++. ++++...++.|
T Consensus        18 ~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~---------~~~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v   85 (300)
T 2qc5_A           18 PDSGPYGITSSEDG-KVWFTQHKANKISSLDQSG---------RIK-EFEVPTPDAKVMCLIVSSLGD-IWFTENGANKI   85 (300)
T ss_dssp             TTCCEEEEEECTTS-CEEEEETTTTEEEEECTTS---------CEE-EEECSSTTCCEEEEEECTTSC-EEEEETTTTEE
T ss_pred             CCCCcceeeECCCC-CEEEEcCCCCeEEEECCCC---------ceE-EEECCCCCCcceeEEECCCCC-EEEEecCCCeE
Confidence            45678899999988 5777766788999998763         011 112223346789999999887 77777778899


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe--eccCCCeeEEEe
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VAHQSEVGVSIL  281 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~i~~  281 (325)
                      ..||.. +..     ...........+..+++.+++ .++++...++.|..+|.. ++    +..+  ......+.++++
T Consensus        86 ~~~d~~-g~~-----~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~----~~~~~~~~~~~~~~~i~~  153 (300)
T 2qc5_A           86 GKLSKK-GGF-----TEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GT----IYEYDLPNKGSYPAFITL  153 (300)
T ss_dssp             EEECTT-SCE-----EEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SC----EEEEECSSTTCCEEEEEE
T ss_pred             EEECCC-CCe-----EEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CC----EEEccCCCCCCCceeEEE
Confidence            999987 321     111122234568899999887 577777778899999987 44    2322  223457899999


Q ss_pred             CCCCCc--cCCCCceEEeee
Q 020480          282 NASFRL--SHEDTCTCTHRH  299 (325)
Q Consensus       282 ~p~~~~--~~~~d~~~~~~~  299 (325)
                      +++|.+  +....+.+..++
T Consensus       154 d~~g~l~v~~~~~~~i~~~~  173 (300)
T 2qc5_A          154 GSDNALWFTENQNNSIGRIT  173 (300)
T ss_dssp             CTTSSEEEEETTTTEEEEEC
T ss_pred             CCCCCEEEEecCCCeEEEEC
Confidence            999886  222344555544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.27  E-value=0.00013  Score=61.11  Aligned_cols=152  Identities=7%  Similarity=-0.094  Sum_probs=101.2

Q ss_pred             CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  204 (325)
                      ...+..+++.+++ .++++...++.|..++...          ......+......+.++++.+++. ++++...++.|.
T Consensus        61 ~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~g----------~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~  128 (300)
T 2qc5_A           61 DAKVMCLIVSSLG-DIWFTENGANKIGKLSKKG----------GFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIG  128 (300)
T ss_dssp             TCCEEEEEECTTS-CEEEEETTTTEEEEECTTS----------CEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEE
T ss_pred             CCcceeEEECCCC-CEEEEecCCCeEEEECCCC----------CeEEecCCCCCCCCccceECCCCC-EEEEccCCCeEE
Confidence            4678899999988 5777766678899998763          111112222346789999999887 777777788999


Q ss_pred             EEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe--eccCCCeeEEEeC
Q 020480          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VAHQSEVGVSILN  282 (325)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~i~~~  282 (325)
                      .+|.. +..     ....+......+..+++.+++ +++++...++.|..||. .++    +..+  ..+...+.+++++
T Consensus       129 ~~~~~-g~~-----~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~----~~~~~~~~~~~~~~~i~~d  196 (300)
T 2qc5_A          129 KLTAD-GTI-----YEYDLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGK----LEEYPLPTNAAAPVGITSG  196 (300)
T ss_dssp             EECTT-SCE-----EEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCC----EEEEECSSTTCCEEEEEEC
T ss_pred             EECCC-CCE-----EEccCCCCCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCc----EEEeeCCCCCCCcceEEEC
Confidence            99987 321     111122234568899999987 57777767888999998 444    2223  2334568899999


Q ss_pred             CCCCc--cCCCCceEEeeec
Q 020480          283 ASFRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       283 p~~~~--~~~~d~~~~~~~~  300 (325)
                      ++|.+  +....+.+..++.
T Consensus       197 ~~g~l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          197 NDGALWFVEIMGNKIGRITT  216 (300)
T ss_dssp             TTSSEEEEETTTTEEEEECT
T ss_pred             CCCCEEEEccCCCEEEEEcC
Confidence            99886  2223445555543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.27  E-value=3.3e-05  Score=68.57  Aligned_cols=139  Identities=9%  Similarity=-0.013  Sum_probs=94.2

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE-----ecCCCce-E-EEEecCCCCCeEEE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-----RGHSTEG-Y-GLSWSKFKEGHLLS  196 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-----~~h~~~v-~-~l~~~p~~~~~l~s  196 (325)
                      ....+.+++++|++..+++ +..++.|+.|+...        +.   ...+     .++...- . .++|+|++..++++
T Consensus       217 ~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~--------~~---~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~  284 (409)
T 3hrp_A          217 FSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKT--------QE---VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS  284 (409)
T ss_dssp             SCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTT--------CC---EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred             hcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCC--------CC---EEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence            4466788999995535555 66788999999876        11   2222     1222222 3 99999965547777


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceEeeecC---------------CccEEEEEeecCCCcEEEEEe-cCCcEEEEEccCC
Q 020480          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVH---------------EGVVEDVAWHLRHEYLFGSVG-DDQYLLIWDLRTP  260 (325)
Q Consensus       197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------------~~~v~~v~~~p~~~~~l~s~~-~dg~i~iwd~~~~  260 (325)
                      -..++.|+.|+....        +..+.++               -.....++++|++ +++++-. .++.|+.||+..+
T Consensus       285 d~~~~~I~~~~~~g~--------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          285 DQNLSSVYKITPDGE--------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             ETTTTEEEEECTTCC--------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTT
T ss_pred             eCCCCEEEEEecCCC--------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCC
Confidence            778899999997642        1222222               1347889999997 5887887 8999999998766


Q ss_pred             CCCCCeeEeecc---------------CCCeeEEEeCCCCCc
Q 020480          261 SVSKPVQSVVAH---------------QSEVGVSILNASFRL  287 (325)
Q Consensus       261 ~~~~~~~~~~~h---------------~~~v~~i~~~p~~~~  287 (325)
                      .    +..+.++               -.....|+++++|.+
T Consensus       356 ~----v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~l  393 (409)
T 3hrp_A          356 Y----VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGY  393 (409)
T ss_dssp             E----EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEE
T ss_pred             E----EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCE
Confidence            5    4554443               235788999998876

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.26  E-value=3.4e-05  Score=68.53  Aligned_cols=152  Identities=11%  Similarity=0.062  Sum_probs=96.9

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC--cEE
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA--QIC  204 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg--~i~  204 (325)
                      ....++|++++ +++++...++.|++||...        +   .+..+........ ++|+|++. .|+.+..++  .|.
T Consensus       132 ~P~~la~d~~g-~lyv~d~~~~~I~~id~~~--------g---~~~~~~~~~~~~~-ia~~~~g~-~l~~~d~~~~~~I~  197 (409)
T 3hrp_A          132 YMWGIAAVGNN-TVLAYQRDDPRVRLISVDD--------N---KVTTVHPGFKGGK-PAVTKDKQ-RVYSIGWEGTHTVY  197 (409)
T ss_dssp             CEEEEEECSTT-EEEEEETTTTEEEEEETTT--------T---EEEEEEETCCBCB-CEECTTSS-EEEEEBSSTTCEEE
T ss_pred             CceEEEEeCCC-CEEEEecCCCcEEEEECCC--------C---EEEEeeccCCCCc-eeEecCCC-cEEEEecCCCceEE
Confidence            56789999988 6888877789999999875        1   1223322233344 99999998 777777765  788


Q ss_pred             EEeCCCCCCCCcccceEeeec-CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-----eccCCC--e
Q 020480          205 LWDINAAPKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-----VAHQSE--V  276 (325)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~h~~~--v  276 (325)
                      +++.......   ..+..... ....+.+++++|++..+++ +..++.|+.||..+..    ...+     .++...  .
T Consensus       198 ~~d~~~~~~~---~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~----~~~~~~~~~~g~~~~~P~  269 (409)
T 3hrp_A          198 VYMKASGWAP---TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQE----VTLIKQLELSGSLGTNPG  269 (409)
T ss_dssp             EEEGGGTTCE---EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCC----EEEEEECCCCSCCCCSSC
T ss_pred             EEEcCCCcee---EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCC----EEEEecccccCCCCCCcc
Confidence            8887654220   01111112 4456788999995444554 6778899999998765    2222     112222  2


Q ss_pred             eEEEeCCC-CCc--cCCCCceEEeeec
Q 020480          277 GVSILNAS-FRL--SHEDTCTCTHRHS  300 (325)
Q Consensus       277 ~~i~~~p~-~~~--~~~~d~~~~~~~~  300 (325)
                      +.++|+|+ +.+  +......+..++.
T Consensus       270 ~~ia~~p~~g~lyv~d~~~~~I~~~~~  296 (409)
T 3hrp_A          270 PYLIYYFVDSNFYMSDQNLSSVYKITP  296 (409)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             ccEEEeCCCCEEEEEeCCCCEEEEEec
Confidence            39999994 665  3344556665543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.21  E-value=0.00015  Score=69.00  Aligned_cols=139  Identities=10%  Similarity=0.091  Sum_probs=86.3

Q ss_pred             eEEEecCCCCcEEEEEecCC-------------eEEEEeCCCCCCCCCCCCCCCCcEEEe--c-CCCceEEEEecCCCCC
Q 020480          129 NRARYMPQNPFLIATKTVSA-------------EVYVFDYSKHPSKPPLDGACSPDLRLR--G-HSTEGYGLSWSKFKEG  192 (325)
Q Consensus       129 ~~v~~~~~~~~~la~g~~dg-------------~v~vwd~~~~~~~~~~~~~~~~~~~~~--~-h~~~v~~l~~~p~~~~  192 (325)
                      ..++|+ ++ +.|+.++.+.             .|++|++.+        ........+.  . |...+.++.|+|++..
T Consensus       178 ~~~~Ws-Dg-~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt--------~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~  247 (693)
T 3iuj_A          178 SGISWL-GN-EGFFYSSYDKPDGSELSARTDQHKVYFHRLGT--------AQEDDRLVFGAIPAQHHRYVGATVTEDDRF  247 (693)
T ss_dssp             CCCEEE-TT-TEEEEEESSCCC-------CCCCEEEEEETTS--------CGGGCEEEESCSGGGCCSEEEEEECTTSCE
T ss_pred             ccEEEe-CC-CEEEEEEecCcccccccccCCCcEEEEEECCC--------CcccceEEEecCCCCCeEEEEEEEcCCCCE
Confidence            567899 88 4566656553             499999876        2222222232  3 4455788999999995


Q ss_pred             eEEEEeCC---CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC---CcEEEEEccCCCCCCCe
Q 020480          193 HLLSGSDD---AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD---QYLLIWDLRTPSVSKPV  266 (325)
Q Consensus       193 ~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~  266 (325)
                      ++++.+.+   ..|+++|+..+..     ....+..+....... |++++..+++....+   +.|..+|+.++.. ...
T Consensus       248 l~~~~~~~~~~~~i~~~d~~~~~~-----~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-~~~  320 (693)
T 3iuj_A          248 LLISAANSTSGNRLYVKDLSQENA-----PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-AHW  320 (693)
T ss_dssp             EEEEEESSSSCCEEEEEETTSTTC-----CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGC
T ss_pred             EEEEEccCCCCcEEEEEECCCCCC-----ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc-ccc
Confidence            55555432   5899999976532     233445555555444 666666666666554   5788999887652 113


Q ss_pred             eEeeccCCCeeEEEeCCCCC
Q 020480          267 QSVVAHQSEVGVSILNASFR  286 (325)
Q Consensus       267 ~~~~~h~~~v~~i~~~p~~~  286 (325)
                      ..+..|...+.  .|++++.
T Consensus       321 ~~l~~~~~~~~--~~s~~g~  338 (693)
T 3iuj_A          321 RDLIPERQQVL--TVHSGSG  338 (693)
T ss_dssp             EEEECCCSSCE--EEEEETT
T ss_pred             EEEecCCCCEE--EEEEECC
Confidence            45555655554  7888776

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.17  E-value=6.2e-05  Score=63.79  Aligned_cols=141  Identities=6%  Similarity=-0.055  Sum_probs=94.6

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      ...........|+|++..+++++..++.|..|+...           . ...+..+...+..+++++++. ++++...++
T Consensus        41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-----------~-~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~  107 (305)
T 3dr2_A           41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-----------T-VDVLLDATAFTNGNAVDAQQR-LVHCEHGRR  107 (305)
T ss_dssp             ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-----------C-EEEEEESCSCEEEEEECTTSC-EEEEETTTT
T ss_pred             ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-----------C-EEEEeCCCCccceeeECCCCC-EEEEECCCC
Confidence            345566778999999855888888899999998743           1 334555667789999999987 666666668


Q ss_pred             cEEEEeCCCCCCCCcccceE-eeec-CCccEEEEEeecCCCcEEEE----Eec-------------CCcEEEEEccCCCC
Q 020480          202 QICLWDINAAPKNKSLEAMQ-IFKV-HEGVVEDVAWHLRHEYLFGS----VGD-------------DQYLLIWDLRTPSV  262 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~-~~~~-~~~~v~~v~~~p~~~~~l~s----~~~-------------dg~i~iwd~~~~~~  262 (325)
                      .|.+|+.. +..    ..+. ...+ ....+++++++|+| .++++    |..             .+.|..+|..+++ 
T Consensus       108 ~v~~~~~~-g~~----~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~-  180 (305)
T 3dr2_A          108 AITRSDAD-GQA----HLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP-  180 (305)
T ss_dssp             EEEEECTT-SCE----EEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC-
T ss_pred             EEEEECCC-CCE----EEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc-
Confidence            89999975 321    1111 1111 12346789999987 57765    332             2457777776665 


Q ss_pred             CCCeeEeeccCCCeeEEEeCCCCC
Q 020480          263 SKPVQSVVAHQSEVGVSILNASFR  286 (325)
Q Consensus       263 ~~~~~~~~~h~~~v~~i~~~p~~~  286 (325)
                         +..+. .....+.++|+|+++
T Consensus       181 ---~~~~~-~~~~p~gl~~spdg~  200 (305)
T 3dr2_A          181 ---LQRMA-DLDHPNGLAFSPDEQ  200 (305)
T ss_dssp             ---CEEEE-EESSEEEEEECTTSS
T ss_pred             ---EEEEe-cCCCCcceEEcCCCC
Confidence               23333 445678899999997

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.17  E-value=0.00029  Score=59.35  Aligned_cols=153  Identities=6%  Similarity=-0.035  Sum_probs=96.9

Q ss_pred             CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  204 (325)
                      ..-..+..|++++..++++...++.|+.|+...        +.   ...+ .....+.++++++++. ++++.  ++.|.
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~--------~~---~~~~-~~~~~~~~i~~~~dG~-l~v~~--~~~l~   76 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFT--------KQ---VQRV-TMDAPVSSVALRQSGG-YVATI--GTKFC   76 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTT--------CC---EEEE-ECSSCEEEEEEBTTSS-EEEEE--TTEEE
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCC--------Cc---EEEE-eCCCceEEEEECCCCC-EEEEE--CCeEE
Confidence            345567899997657888888889999999876        21   2223 2456789999999998 55543  56899


Q ss_pred             EEeCCCCCCCCcccceEeeec--CCccEEEEEeecCCCcEEEEEecC---------CcEEEEEccCCCCCCCeeEeeccC
Q 020480          205 LWDINAAPKNKSLEAMQIFKV--HEGVVEDVAWHLRHEYLFGSVGDD---------QYLLIWDLRTPSVSKPVQSVVAHQ  273 (325)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~h~  273 (325)
                      +||..++..    ..+.....  ....+++++++|++ +++++....         ..-.||.+.....   +..+..+.
T Consensus        77 ~~d~~~g~~----~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~---~~~~~~~~  148 (297)
T 3g4e_A           77 ALNWKEQSA----VVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDHH---VKKYFDQV  148 (297)
T ss_dssp             EEETTTTEE----EEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTSC---EEEEEEEE
T ss_pred             EEECCCCcE----EEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCCC---EEEEeecc
Confidence            999876521    11111111  23458899999998 466544322         3345666554332   33344444


Q ss_pred             CCeeEEEeCCCCC-c--cCCCCceEEeeec
Q 020480          274 SEVGVSILNASFR-L--SHEDTCTCTHRHS  300 (325)
Q Consensus       274 ~~v~~i~~~p~~~-~--~~~~d~~~~~~~~  300 (325)
                      ...+.++|+|+++ +  +.+..+.+..+++
T Consensus       149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~  178 (297)
T 3g4e_A          149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDY  178 (297)
T ss_dssp             SBEEEEEECTTSCEEEEEEGGGTEEEEEEE
T ss_pred             ccccceEEcCCCCEEEEecCCCCcEEEEec
Confidence            5678999999997 2  3334555666553

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.16  E-value=8.5e-05  Score=63.75  Aligned_cols=138  Identities=5%  Similarity=-0.017  Sum_probs=90.6

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecC----------CeEEEEeCCCCCCCCCCCCCCCCcEEEecC-CCceEEEEecCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVS----------AEVYVFDYSKHPSKPPLDGACSPDLRLRGH-STEGYGLSWSKF  189 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~d----------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~  189 (325)
                      .+........+.+.|+| ++++++..+          +.|.++|..+          .+....+... ......++++|+
T Consensus       167 ~i~~g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t----------~~v~~~~~~~~g~~p~~la~~~d  235 (328)
T 3dsm_A          167 ELTIGIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAET----------FTVEKQFKFKLGDWPSEVQLNGT  235 (328)
T ss_dssp             EEECSSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTT----------TEEEEEEECCTTCCCEEEEECTT
T ss_pred             EEEcCCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCC----------CeEEEEEecCCCCCceeEEEecC
Confidence            34444456788999988 566665544          7899999876          2223333321 236789999999


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEE----ecCCcEEEEEccCCCCCCC
Q 020480          190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV----GDDQYLLIWDLRTPSVSKP  265 (325)
Q Consensus       190 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~----~~dg~i~iwd~~~~~~~~~  265 (325)
                      +. .++.+..  .|.+||..++....    ...+.........++++|++..++++.    ..++.|.+||.. ++   .
T Consensus       236 ~~-~lyv~~~--~v~~~d~~t~~~~~----~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~---~  304 (328)
T 3dsm_A          236 RD-TLYWINN--DIWRMPVEADRVPV----RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK---L  304 (328)
T ss_dssp             SC-EEEEESS--SEEEEETTCSSCCS----SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC---E
T ss_pred             CC-EEEEEcc--EEEEEECCCCceee----eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC---E
Confidence            88 5666554  89999998764311    111111245688999999666788887    778999999998 65   3


Q ss_pred             eeEeeccCCCeeEEEe
Q 020480          266 VQSVVAHQSEVGVSIL  281 (325)
Q Consensus       266 ~~~~~~h~~~v~~i~~  281 (325)
                      +.++.. ......++|
T Consensus       305 ~~~i~~-G~~P~~~~~  319 (328)
T 3dsm_A          305 IDEFYV-GIIPGAFCW  319 (328)
T ss_dssp             EEEEEE-EESEEEEEE
T ss_pred             EEEEEe-ccCcceEEE
Confidence            565542 233455555

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.16  E-value=0.00018  Score=61.59  Aligned_cols=150  Identities=11%  Similarity=-0.002  Sum_probs=93.2

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEE
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW  206 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iw  206 (325)
                      ......|+|++..++++...++.|..|+...        +.   ...+. ....+.++.|++++. ++++. .+ .|.+|
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~--------~~---~~~~~-~~~~v~~i~~~~dg~-l~v~~-~~-gl~~~  114 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLAS--------GR---KTVHA-LPFMGSALAKISDSK-QLIAS-DD-GLFLR  114 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTT--------TE---EEEEE-CSSCEEEEEEEETTE-EEEEE-TT-EEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCC--------Cc---EEEEE-CCCcceEEEEeCCCe-EEEEE-CC-CEEEE
Confidence            3467889998667888888889999999876        21   22222 345789999999987 55544 44 49999


Q ss_pred             eCCCCCCCCcccceEeee--cCCccEEEEEeecCCCcEEEEEecC----CcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          207 DINAAPKNKSLEAMQIFK--VHEGVVEDVAWHLRHEYLFGSVGDD----QYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       207 d~~~~~~~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      |..++..    ..+....  .....+++++++|++ +++++...+    +...||.+..++    +..+..+....+.++
T Consensus       115 d~~~g~~----~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~~g~----~~~~~~~~~~~~~i~  185 (326)
T 2ghs_A          115 DTATGVL----TLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVAKGK----VTKLFADISIPNSIC  185 (326)
T ss_dssp             ETTTCCE----EEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEETTE----EEEEEEEESSEEEEE
T ss_pred             ECCCCcE----EEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEeCCc----EEEeeCCCcccCCeE
Confidence            9876532    1111111  112468899999988 455544322    223444443332    333333445678999


Q ss_pred             eCCCCC-c--cCCCCceEEeeec
Q 020480          281 LNASFR-L--SHEDTCTCTHRHS  300 (325)
Q Consensus       281 ~~p~~~-~--~~~~d~~~~~~~~  300 (325)
                      |+|+|+ +  +....+.+..++.
T Consensus       186 ~s~dg~~lyv~~~~~~~I~~~d~  208 (326)
T 2ghs_A          186 FSPDGTTGYFVDTKVNRLMRVPL  208 (326)
T ss_dssp             ECTTSCEEEEEETTTCEEEEEEB
T ss_pred             EcCCCCEEEEEECCCCEEEEEEc
Confidence            999997 2  3344566666664

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.13  E-value=4.7e-05  Score=64.39  Aligned_cols=122  Identities=8%  Similarity=0.086  Sum_probs=84.9

Q ss_pred             CCCeeEEEec----CCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCC---CcEEEecCC-CceEEEEecCCCCCeEEE
Q 020480          125 DGEVNRARYM----PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACS---PDLRLRGHS-TEGYGLSWSKFKEGHLLS  196 (325)
Q Consensus       125 ~~~v~~v~~~----~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~---~~~~~~~h~-~~v~~l~~~p~~~~~l~s  196 (325)
                      ....+.++++    |++..++++...++.|.+|+....       +...   ....+.++. ..+..+++++++. ++++
T Consensus       171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~-------g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~  242 (314)
T 1pjx_A          171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP-------AKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVA  242 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET-------TEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEE
T ss_pred             CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCC-------CccccceEEEECCCCCCCCCCceEECCCCC-EEEE
Confidence            3456788999    987445556567889999997520       1111   112233343 5678999999987 7888


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCC
Q 020480          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP  260 (325)
Q Consensus       197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~  260 (325)
                      ...++.|.+||..++.      .+..+..+...+.+++++|++..++++...++.|..|++...
T Consensus       243 ~~~~~~i~~~d~~~g~------~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          243 NWGSSHIEVFGPDGGQ------PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EETTTEEEEECTTCBS------CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EcCCCEEEEEcCCCCc------EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            7788999999987542      234445555779999999987446666677789999998754

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.06  E-value=6.6e-05  Score=71.37  Aligned_cols=144  Identities=13%  Similarity=0.122  Sum_probs=86.4

Q ss_pred             cCCCeeEEEecCCCCcEEEE-----EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480          124 HDGEVNRARYMPQNPFLIAT-----KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~-----g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      |...+..++|+|+| ++||.     |+....|+++|+.+        +..... .+..  .....++|+ ++. .|+.++
T Consensus       127 ~~~~l~~~~~SpDg-~~lAy~~~~~G~~~~~i~v~dl~t--------g~~~~~-~~~~--~k~~~~~Ws-Dg~-~l~y~~  192 (693)
T 3iuj_A          127 GTTALDQLSFSRDG-RILAYSLSLAGSDWREIHLMDVES--------KQPLET-PLKD--VKFSGISWL-GNE-GFFYSS  192 (693)
T ss_dssp             SCCEEEEEEECTTS-SEEEEEEECSSCCEEEEEEEETTT--------CSEEEE-EEEE--EESCCCEEE-TTT-EEEEEE
T ss_pred             CcEEEEEEEECCCC-CEEEEEEecCCCceEEEEEEECCC--------CCCCcc-ccCC--ceeccEEEe-CCC-EEEEEE
Confidence            44467788999999 56663     22335799999987        322111 1211  112577899 988 576666


Q ss_pred             CCC-------------cEEEEeCCCCCCCCcccceEeeec-CCccEEEEEeecCCCcEEEEEecC---CcEEEEEccCCC
Q 020480          199 DDA-------------QICLWDINAAPKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDD---QYLLIWDLRTPS  261 (325)
Q Consensus       199 ~dg-------------~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~s~~~d---g~i~iwd~~~~~  261 (325)
                      .+.             .|++|++.+.....  ..+..... |...+..+.|+|++..++++.+.+   ..|+++|+.++.
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~--~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~  270 (693)
T 3iuj_A          193 YDKPDGSELSARTDQHKVYFHRLGTAQEDD--RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN  270 (693)
T ss_dssp             SSCCC-------CCCCEEEEEETTSCGGGC--EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred             ecCcccccccccCCCcEEEEEECCCCcccc--eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence            663             39999987753210  12222233 444578899999987565655533   578999998764


Q ss_pred             CCCCeeEeeccCCCeeEEEeCCCCC
Q 020480          262 VSKPVQSVVAHQSEVGVSILNASFR  286 (325)
Q Consensus       262 ~~~~~~~~~~h~~~v~~i~~~p~~~  286 (325)
                      .  ....+..+....... |+++|.
T Consensus       271 ~--~~~~l~~~~~~~~~~-~~~~g~  292 (693)
T 3iuj_A          271 A--PLLTVQGDLDADVSL-VDNKGS  292 (693)
T ss_dssp             C--CCEEEECSSSSCEEE-EEEETT
T ss_pred             C--ceEEEeCCCCceEEE-EeccCC
Confidence            2  245555555544444 444433

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.01  E-value=0.00016  Score=62.45  Aligned_cols=156  Identities=12%  Similarity=0.042  Sum_probs=89.4

Q ss_pred             CCeeEEEecCCCCcEEEEEe---cCCeEEEEeCCCCCCCCCCCC--CCCC---cEEEec--------------CCCceEE
Q 020480          126 GEVNRARYMPQNPFLIATKT---VSAEVYVFDYSKHPSKPPLDG--ACSP---DLRLRG--------------HSTEGYG  183 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~---~dg~v~vwd~~~~~~~~~~~~--~~~~---~~~~~~--------------h~~~v~~  183 (325)
                      ..++.+++.+++..++++..   .++.|.+||+..........+  ...+   .....+              ....+..
T Consensus       120 ~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~g  199 (343)
T 2qe8_A          120 SFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNG  199 (343)
T ss_dssp             CCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEE
T ss_pred             cccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccce
Confidence            45689999986545666655   678999999875210000000  0000   000000              1124688


Q ss_pred             EEecCCCCCeEEEEeCCC-cEEEEeCCCCCC--CCcccceE--eeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEcc
Q 020480          184 LSWSKFKEGHLLSGSDDA-QICLWDINAAPK--NKSLEAMQ--IFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR  258 (325)
Q Consensus       184 l~~~p~~~~~l~s~s~dg-~i~iwd~~~~~~--~~~~~~~~--~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~  258 (325)
                      ++|+|++. .|+.+..++ .+..++......  ........  ...++......+++++++ +++++...++.|.+||..
T Consensus       200 ia~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~  277 (343)
T 2qe8_A          200 IVLDAENE-WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSA  277 (343)
T ss_dssp             EEECTTSC-EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETT
T ss_pred             eEeccCCC-EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEECC
Confidence            99999998 666666555 555554321100  00000000  111333456678999987 788898899999999985


Q ss_pred             CCCCCCCeeEee--ccCCCeeEEEeCCCCCc
Q 020480          259 TPSVSKPVQSVV--AHQSEVGVSILNASFRL  287 (325)
Q Consensus       259 ~~~~~~~~~~~~--~h~~~v~~i~~~p~~~~  287 (325)
                      +++    +..+.  .+...+.+++|.+++.+
T Consensus       278 ~G~----~~~~~~~~~~~~p~~va~~~~g~l  304 (343)
T 2qe8_A          278 DRA----YKLLVTDEKLSWTDSFNFGSDGYL  304 (343)
T ss_dssp             TTE----EEEEEECGGGSCEEEEEECTTSCE
T ss_pred             CCC----EEEEEECCceecCCeeEECCCCcE
Confidence            444    33332  22456889999998875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.99  E-value=0.00013  Score=63.01  Aligned_cols=130  Identities=15%  Similarity=0.170  Sum_probs=82.0

Q ss_pred             CceEEEEEeccCCCeeEEEecCCCCcEEEEEe--cCCeEEEEeCCCCCCCCCCCCCCCCc----EEEecCCCceEEEEec
Q 020480          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKT--VSAEVYVFDYSKHPSKPPLDGACSPD----LRLRGHSTEGYGLSWS  187 (325)
Q Consensus       114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~--~dg~v~vwd~~~~~~~~~~~~~~~~~----~~~~~h~~~v~~l~~~  187 (325)
                      +.++.+..+.  .....++++++| +++++..  .++.++||.+..        +...+.    .....|...+.+++++
T Consensus         7 g~~~~v~~~~--~~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~~--------g~~~~~p~~~~~~~~~~~~p~gv~~d   75 (343)
T 2qe8_A            7 DRLEVVAELS--LAPGNITLTPDG-RLFLSLHQFYQPEMQVAELTQ--------DGLIPFPPQSGNAIITFDTVLGIKSD   75 (343)
T ss_dssp             -CCEEEEEES--SCEEEEEECTTS-CEEEEECGGGCCSCSEEEEET--------TEEEESCCCCSSCCCCCSCEEEEEEC
T ss_pred             ceeEEEEEcC--CCcceEEECCCC-CEEEEeCCCCCCceEEEEECC--------CCeecCCCcccCcccceeEeeEEEEc
Confidence            3456555544  688999999998 6777753  234244444432        110000    0112355689999999


Q ss_pred             CCCCCeEEEEeC-----CCcEEEEeCCCCCCCCcccceEeeec------CCccEEEEEeecCCCcEEEEEe---cCCcEE
Q 020480          188 KFKEGHLLSGSD-----DAQICLWDINAAPKNKSLEAMQIFKV------HEGVVEDVAWHLRHEYLFGSVG---DDQYLL  253 (325)
Q Consensus       188 p~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~------~~~~v~~v~~~p~~~~~l~s~~---~dg~i~  253 (325)
                      +++. ++++-..     ++.|.+||+.+++      .+..+..      +...+..++++|++..++++..   .++.|.
T Consensus        76 ~~g~-L~v~D~g~~~~~~~~i~~~d~~tg~------~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~  148 (343)
T 2qe8_A           76 GNGI-VWMLDNGNQSKSVPKLVAWDTLNNQ------LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALI  148 (343)
T ss_dssp             SSSE-EEEEECHHHHTSCCEEEEEETTTTE------EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEE
T ss_pred             CCCc-EEEEcCCCCcCCCCeEEEEECCCCe------EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEE
Confidence            9976 5555433     5789999998763      2333321      2345688999986556667766   788999


Q ss_pred             EEEccCCC
Q 020480          254 IWDLRTPS  261 (325)
Q Consensus       254 iwd~~~~~  261 (325)
                      +||+.+++
T Consensus       149 v~d~~~g~  156 (343)
T 2qe8_A          149 RVDLQTGL  156 (343)
T ss_dssp             EEETTTCC
T ss_pred             EEECCCCC
Confidence            99998665

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.91  E-value=0.0042  Score=51.19  Aligned_cols=154  Identities=8%  Similarity=0.005  Sum_probs=96.7

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEE
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW  206 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iw  206 (325)
                      .+..++|.+.+..++++-...+.|..++...        .  .....+.........+++++.+..++++-...+.|.++
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g--------~--~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~  106 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHG--------G--EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVA  106 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSS--------C--CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCC--------C--CcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEE
Confidence            5678999997656777777788999999875        1  11222222235678999999766466666677899999


Q ss_pred             eCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec--CCcEEEEEccCCCCCCCeeEe-eccCCCeeEEEeCC
Q 020480          207 DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD--DQYLLIWDLRTPSVSKPVQSV-VAHQSEVGVSILNA  283 (325)
Q Consensus       207 d~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~i~~~p  283 (325)
                      ++.....      .............++++|++..++++...  .+.|..+++....    ...+ .......+.++++|
T Consensus       107 ~~~g~~~------~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~----~~~~~~~~~~~P~gia~d~  176 (267)
T 1npe_A          107 KMDGTQR------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN----RRILAQDNLGLPNGLTFDA  176 (267)
T ss_dssp             ETTSCSC------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC----CEEEECTTCSCEEEEEEET
T ss_pred             EcCCCCE------EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC----cEEEEECCCCCCcEEEEcC
Confidence            9875321      11111122457899999965556655544  4688888876433    2222 12234578899999


Q ss_pred             CCC-c--cCCCCceEEeeec
Q 020480          284 SFR-L--SHEDTCTCTHRHS  300 (325)
Q Consensus       284 ~~~-~--~~~~d~~~~~~~~  300 (325)
                      ++. +  +......+...+.
T Consensus       177 ~~~~lyv~d~~~~~I~~~~~  196 (267)
T 1npe_A          177 FSSQLCWVDAGTHRAECLNP  196 (267)
T ss_dssp             TTTEEEEEETTTTEEEEEET
T ss_pred             CCCEEEEEECCCCEEEEEec
Confidence            754 3  3334455555544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.82  E-value=3e-06  Score=74.25  Aligned_cols=144  Identities=12%  Similarity=0.058  Sum_probs=70.6

Q ss_pred             cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCccc
Q 020480          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE  218 (325)
Q Consensus       139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  218 (325)
                      ..+++++.||.|+.||..+          .+.+.++..  +.+.+..+..++. .+++++.||.|+.||..+++..    
T Consensus        10 ~~v~~gs~dg~v~a~d~~t----------G~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~----   72 (369)
T 2hz6_A           10 TLLFVSTLDGSLHAVSKRT----------GSIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGL----   72 (369)
T ss_dssp             TEEEEEETTSEEEEEETTT----------CCEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCS----
T ss_pred             CEEEEEcCCCEEEEEECCC----------CCEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCcee----
Confidence            5788899999999999887          233555554  4455555556665 6888889999999999877542    


Q ss_pred             ceEeeecCCc-cEEE-EEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--ccCCCCce
Q 020480          219 AMQIFKVHEG-VVED-VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--LSHEDTCT  294 (325)
Q Consensus       219 ~~~~~~~~~~-~v~~-v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~~~~~d~~  294 (325)
                        ..+..+.. .+.+ .... .+ ..+++++.++.|+.||.++++.   +..+..+.    .+.++|.+.  +.++.++.
T Consensus        73 --w~~~~~~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~---~w~~~~~~----~~~~~p~~~~v~~~~~dg~  141 (369)
T 2hz6_A           73 --TKLPFTIPELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEK---QQTLSSAF----ADSLSPSTSLLYLGRTEYT  141 (369)
T ss_dssp             --EECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC-----------------------------EEEEEEEEE
T ss_pred             --eeeeccCccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcE---EEEecCCC----cccccccCCEEEEEecCCE
Confidence              22221111 1100 0111 22 3567888899999999999884   55554332    133455443  26667778


Q ss_pred             EEeeecc--eeeeccCee
Q 020480          295 CTHRHSR--YLLYKFPFF  310 (325)
Q Consensus       295 ~~~~~~~--~~~~~~~~~  310 (325)
                      +..|+.+  ...|.++..
T Consensus       142 v~a~d~~tG~~~W~~~~~  159 (369)
T 2hz6_A          142 ITMYDTKTRELRWNATYF  159 (369)
T ss_dssp             EECCCSSSSSCCCEEEEE
T ss_pred             EEEEECCCCCEEEeEecc
Confidence            8888754  345665543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.77  E-value=0.00051  Score=58.09  Aligned_cols=152  Identities=9%  Similarity=-0.020  Sum_probs=91.5

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-----CCceEEEEecCCCCCeEEE-
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-----STEGYGLSWSKFKEGHLLS-  196 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~p~~~~~l~s-  196 (325)
                      .+...++.+++.++| +++++...++.|.+|+...         .   ...+..+     ...+.++.+.|++. +++| 
T Consensus        83 ~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~g---------~---~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td  148 (305)
T 3dr2_A           83 DATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDADG---------Q---AHLLVGRYAGKRLNSPNDLIVARDGA-IWFTD  148 (305)
T ss_dssp             ESCSCEEEEEECTTS-CEEEEETTTTEEEEECTTS---------C---EEEEECEETTEECSCCCCEEECTTSC-EEEEC
T ss_pred             CCCCccceeeECCCC-CEEEEECCCCEEEEECCCC---------C---EEEEEeccCCCccCCCCCEEECCCCC-EEEeC
Confidence            355678999999998 5666655567899998753         1   1122111     13466899999998 7776 


Q ss_pred             ---EeC-------------CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC------CcEEE
Q 020480          197 ---GSD-------------DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD------QYLLI  254 (325)
Q Consensus       197 ---~s~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d------g~i~i  254 (325)
                         |..             .+.|..+|..++..      . .+. .....+.++|+|++. .|+.+...      +.|.+
T Consensus       149 ~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~------~-~~~-~~~~p~gl~~spdg~-~lyv~~~~~~~~~~~~i~~  219 (305)
T 3dr2_A          149 PPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL------Q-RMA-DLDHPNGLAFSPDEQ-TLYVSQTPEQGHGSVEITA  219 (305)
T ss_dssp             CSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC------E-EEE-EESSEEEEEECTTSS-EEEEEECCC---CCCEEEE
T ss_pred             cCCCccccccccccccccCCCeEEEEcCCCCcE------E-EEe-cCCCCcceEEcCCCC-EEEEEecCCcCCCCCEEEE
Confidence               332             25677777755422      1 112 234567899999985 44444443      78999


Q ss_pred             EEccCCCCCCCeeEe-eccCCCeeEEEeCCCCCc-cCCCCceEEeee
Q 020480          255 WDLRTPSVSKPVQSV-VAHQSEVGVSILNASFRL-SHEDTCTCTHRH  299 (325)
Q Consensus       255 wd~~~~~~~~~~~~~-~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~  299 (325)
                      |++..... .....+ .........++++++|.+ .+..+ .+.+++
T Consensus       220 ~~~~~~~l-~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~  264 (305)
T 3dr2_A          220 FAWRDGAL-HDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVFD  264 (305)
T ss_dssp             EEEETTEE-EEEEEEECCSSSCCCSEEECTTSCEEECCSS-EEEEEC
T ss_pred             EEecCCCc-cCCeEEEECCCCCCCeEEECCCCCEEEecCC-cEEEEC
Confidence            99875430 001111 112344567899999987 33333 355554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.76  E-value=1.7e-06  Score=75.83  Aligned_cols=153  Identities=10%  Similarity=0.015  Sum_probs=71.0

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc-eE-EEEecCCCCCeEEEEeCCCcE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE-GY-GLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~-v~-~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      +.+.+..+..++ .++++++.||.|+.||..+        +  +.+..+..+... +. +.... .+. .+++++.++.+
T Consensus        38 ~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~t--------G--~~~w~~~~~~~~~~~~sp~~~-~~~-~v~~g~~dg~v  104 (369)
T 2hz6_A           38 DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKN--------N--EGLTKLPFTIPELVQASPCRS-SDG-ILYMGKKQDIW  104 (369)
T ss_dssp             CCSCCCC------CCEEECTTTCCEEEC---------------CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEE
T ss_pred             CCceecceEcCC-CEEEEeCCCCEEEEEECCC--------C--ceeeeeeccCccccccCceEe-cCC-EEEEEeCCCEE
Confidence            445454455555 5777778999999999866        2  223333222110 10 00111 233 67888889999


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCC
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNA  283 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p  283 (325)
                      +.||.++++.      +..+..+.    ...++|.+ ..+++++.|+.|+.||.++++.   +..+..+.  ....++++
T Consensus       105 ~a~D~~tG~~------~w~~~~~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~~---~W~~~~~~--~~~~~~~~  168 (369)
T 2hz6_A          105 YVIDLLTGEK------QQTLSSAF----ADSLSPST-SLLYLGRTEYTITMYDTKTREL---RWNATYFD--YAASLPED  168 (369)
T ss_dssp             EEECCC---------------------------------EEEEEEEEEEECCCSSSSSC---CCEEEEEE--ECCBCCCC
T ss_pred             EEEECCCCcE------EEEecCCC----cccccccC-CEEEEEecCCEEEEEECCCCCE---EEeEeccc--ccCccccC
Confidence            9999998854      33333332    13456655 5777889999999999999874   44443211  12223333


Q ss_pred             C----CC-ccCCCCceEEeeecc--eeeecc
Q 020480          284 S----FR-LSHEDTCTCTHRHSR--YLLYKF  307 (325)
Q Consensus       284 ~----~~-~~~~~d~~~~~~~~~--~~~~~~  307 (325)
                      +    +. +.++.++.+..++..  ...|.+
T Consensus       169 ~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~  199 (369)
T 2hz6_A          169 DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ  199 (369)
T ss_dssp             CTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred             CccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence            2    33 355667777777653  244544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.69  E-value=0.0011  Score=58.66  Aligned_cols=153  Identities=10%  Similarity=0.097  Sum_probs=96.1

Q ss_pred             eeEEEecCCCCcEEEEEecC------CeEEEEeCCCCCCCCCCCCCCCCcEEEec--CC-CceEEEEecCCCCCeEEEEe
Q 020480          128 VNRARYMPQNPFLIATKTVS------AEVYVFDYSKHPSKPPLDGACSPDLRLRG--HS-TEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       128 v~~v~~~~~~~~~la~g~~d------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~--h~-~~v~~l~~~p~~~~~l~s~s  198 (325)
                      -..+.+.|+|  +++++..+      |.|.++|..+          .+.+.++..  .. ...+.+.|+|+++ .+++..
T Consensus       140 Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T----------~~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~  206 (462)
T 2ece_A          140 LHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYS----------FEPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSE  206 (462)
T ss_dssp             EEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTT----------CCEEEECCSBCTTCCCCCCEEEETTTT-EEEECB
T ss_pred             ccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCC----------CeEEEEEccCCCCccccceEEECCCCC-EEEEcc
Confidence            3456778887  56665555      7899999886          344444431  11 2245688899998 777774


Q ss_pred             -------------------CCCcEEEEeCCCCCCCCcccceEeeecC--CccEEEEEe--ecCCCcEEEEEe-----cCC
Q 020480          199 -------------------DDAQICLWDINAAPKNKSLEAMQIFKVH--EGVVEDVAW--HLRHEYLFGSVG-----DDQ  250 (325)
Q Consensus       199 -------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~v~~v~~--~p~~~~~l~s~~-----~dg  250 (325)
                                         ...+|.+||+.++      +.+.++...  ......+.|  +|++...++++-     .++
T Consensus       207 wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss  280 (462)
T 2ece_A          207 WAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSS  280 (462)
T ss_dssp             CCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCE
T ss_pred             CcCccccccccchhhhhhccCCEEEEEECCCC------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCc
Confidence                               3789999999875      234444332  133455555  999876666666     778


Q ss_pred             cEEEEEccCCCCCCCeeEe--ec----------------cCCCeeEEEeCCCCCc---cCCCCceEEeeec
Q 020480          251 YLLIWDLRTPSVSKPVQSV--VA----------------HQSEVGVSILNASFRL---SHEDTCTCTHRHS  300 (325)
Q Consensus       251 ~i~iwd~~~~~~~~~~~~~--~~----------------h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~  300 (325)
                      +|.+|....+. .+..+.+  ..                -......|.++|+|++   +.-..+.+.++++
T Consensus       281 ~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV  350 (462)
T 2ece_A          281 SIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDI  350 (462)
T ss_dssp             EEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEEC
T ss_pred             eEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            88877665422 1111111  00                0245788999999994   4445567777765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.64  E-value=0.0023  Score=55.85  Aligned_cols=92  Identities=9%  Similarity=-0.123  Sum_probs=61.2

Q ss_pred             eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe----------CCCcEEEEeCCCCCCCCccc
Q 020480          149 EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS----------DDAQICLWDINAAPKNKSLE  218 (325)
Q Consensus       149 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~  218 (325)
                      .|.++|..+          .+.+.++.....+  .+.++|++. .++.+.          .++.|.+||..+.+.     
T Consensus        48 ~v~v~D~~t----------~~~~~~i~~g~~p--~i~~spDg~-~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~-----  109 (373)
T 2mad_H           48 QQWVLDAGS----------GSILGHVNGGFLP--NPVAAHSGS-EFALASTSFSRIAKGKRTDYVEVFDPVTFLP-----  109 (373)
T ss_pred             EEEEEECCC----------CeEEEEecCCCCC--CeEECCCCC-EEEEEeccccccccCCCCCeEEEEECCCCcE-----
Confidence            889999876          2334555433333  999999999 566554          367899999986532     


Q ss_pred             ceEeeecC-------CccEEEEEeecCCCcEEEEEe-c-CCcEEEEEccCCC
Q 020480          219 AMQIFKVH-------EGVVEDVAWHLRHEYLFGSVG-D-DQYLLIWDLRTPS  261 (325)
Q Consensus       219 ~~~~~~~~-------~~~v~~v~~~p~~~~~l~s~~-~-dg~i~iwd~~~~~  261 (325)
                       +..+...       ......++|+|++. .|+++. . ++.|.++| .+++
T Consensus       110 -~~~i~~~~~~~~~~g~~p~~~~~spDG~-~l~v~n~~~~~~v~viD-~t~~  158 (373)
T 2mad_H          110 -IADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAAGPAVGLVV-QGGS  158 (373)
T ss_pred             -EEEEECCCccccccCCCccceEECCCCC-EEEEEecCCCCeEEEEE-CCCC
Confidence             2222111       12345789999985 454444 3 58899999 8776

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.60  E-value=0.0063  Score=50.25  Aligned_cols=147  Identities=13%  Similarity=0.053  Sum_probs=92.7

Q ss_pred             ceEEEEEeccCCC--eeEEEecCCCCcEEEEEec--CCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCC
Q 020480          115 KVQIIQQINHDGE--VNRARYMPQNPFLIATKTV--SAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKF  189 (325)
Q Consensus       115 ~~~~~~~~~h~~~--v~~v~~~~~~~~~la~g~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~  189 (325)
                      ..+.+..+.|...  ...+.|++++ .++++.+.  ++.|+++|+.+          .+.+..+. +.......+++.  
T Consensus         8 ~~~vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~t----------g~v~~~i~l~~~~fgeGi~~~--   74 (266)
T 2iwa_A            8 IVEVLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQT----------GKVENIHKMDDSYFGEGLTLL--   74 (266)
T ss_dssp             EEEEEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTT----------CCEEEEEECCTTCCEEEEEEE--
T ss_pred             CceEEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCC----------CCEEEEEecCCCcceEEEEEe--
Confidence            4567788888754  5799999986 56666553  57999999987          23344443 122233455655  


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe
Q 020480          190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV  269 (325)
Q Consensus       190 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  269 (325)
                      +..++++.-.++.+.++|..+.      ..+..+......-+.  +++++..++++- .++.|.++|..+.+.   +..+
T Consensus        75 g~~lyv~t~~~~~v~viD~~t~------~v~~~i~~g~~~g~g--lt~Dg~~l~vs~-gs~~l~viD~~t~~v---~~~I  142 (266)
T 2iwa_A           75 NEKLYQVVWLKNIGFIYDRRTL------SNIKNFTHQMKDGWG--LATDGKILYGSD-GTSILYEIDPHTFKL---IKKH  142 (266)
T ss_dssp             TTEEEEEETTCSEEEEEETTTT------EEEEEEECCSSSCCE--EEECSSSEEEEC-SSSEEEEECTTTCCE---EEEE
T ss_pred             CCEEEEEEecCCEEEEEECCCC------cEEEEEECCCCCeEE--EEECCCEEEEEC-CCCeEEEEECCCCcE---EEEE
Confidence            4436666667899999999876      334444322111223  455676666554 688999999988774   4444


Q ss_pred             ec--cC---CCeeEEEeCCCCCc
Q 020480          270 VA--HQ---SEVGVSILNASFRL  287 (325)
Q Consensus       270 ~~--h~---~~v~~i~~~p~~~~  287 (325)
                      .-  ..   ..++.+.|. +|++
T Consensus       143 ~Vg~~~~p~~~~nele~~-dg~l  164 (266)
T 2iwa_A          143 NVKYNGHRVIRLNELEYI-NGEV  164 (266)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEE
T ss_pred             EECCCCcccccceeEEEE-CCEE
Confidence            31  11   236677887 6664

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.60  E-value=0.00042  Score=60.50  Aligned_cols=117  Identities=7%  Similarity=-0.111  Sum_probs=76.9

Q ss_pred             EecCCCCcEEEEEec----CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe---------
Q 020480          132 RYMPQNPFLIATKTV----SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS---------  198 (325)
Q Consensus       132 ~~~~~~~~~la~g~~----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s---------  198 (325)
                      ...|++..++++-..    ++.|.+.|..+          .+.+.++..-..+ . +.++|++..++++..         
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t----------~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~  106 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEA----------GRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGE  106 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTT----------TEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEE
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCC----------CeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCC
Confidence            445777544444333    67999999987          4445666544444 4 999999995444432         


Q ss_pred             CCCcEEEEeCCCCCCCCcccceEeeecC-------CccEEEEEeecCCCcEEEEEe-cCCcEEEEEccCCCCCCCeeEe
Q 020480          199 DDAQICLWDINAAPKNKSLEAMQIFKVH-------EGVVEDVAWHLRHEYLFGSVG-DDQYLLIWDLRTPSVSKPVQSV  269 (325)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~v~~v~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~  269 (325)
                      .++.|.+||..+.+      .+..+.-.       ......++++|+|..++++.. .++.|.++|+.+.+.   +.++
T Consensus       107 ~~~~VsviD~~t~~------v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v---v~tI  176 (386)
T 3sjl_D          107 RTDYVEVFDPVTLL------PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF---KRML  176 (386)
T ss_dssp             EEEEEEEECTTTCC------EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE---EEEE
T ss_pred             CCCEEEEEECCCCe------EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE---EEEE
Confidence            46789999998863      33333211       123557899999865554443 378999999999874   5554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.59  E-value=0.0033  Score=54.90  Aligned_cols=108  Identities=12%  Similarity=-0.075  Sum_probs=70.8

Q ss_pred             EEEecCCCCcEEEEEe----------cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-------CCceEEEEecCCCCC
Q 020480          130 RARYMPQNPFLIATKT----------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-------STEGYGLSWSKFKEG  192 (325)
Q Consensus       130 ~v~~~~~~~~~la~g~----------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~  192 (325)
                      .+.++|++. .++++.          .++.|.+||..+          .+.+..+.--       ......+.|+|++. 
T Consensus        70 ~i~~spDg~-~lyv~n~~~~~~~rg~~~~~v~viD~~t----------~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~-  137 (373)
T 2mad_H           70 NPVAAHSGS-EFALASTSFSRIAKGKRTDYVEVFDPVT----------FLPIADIELPDAPRFDVGPYSWMNANTPNNA-  137 (373)
T ss_pred             CeEECCCCC-EEEEEeccccccccCCCCCeEEEEECCC----------CcEEEEEECCCccccccCCCccceEECCCCC-
Confidence            899999995 555543          367899999876          2333333211       12345899999999 


Q ss_pred             eEEEEeC--CCcEEEEeCCCCCCCCcccceEe-eecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480          193 HLLSGSD--DAQICLWDINAAPKNKSLEAMQI-FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (325)
Q Consensus       193 ~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~  261 (325)
                      +|+.++.  ++.|.++| .+++      .+.. +.. ..   ++.+.|.+...+++.+.||.+.++|. +++
T Consensus       138 ~l~v~n~~~~~~v~viD-~t~~------~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~  197 (373)
T 2mad_H          138 DLLFFQFAAGPAVGLVV-QGGS------SDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG  197 (373)
T ss_pred             EEEEEecCCCCeEEEEE-CCCC------EEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCc
Confidence            6666653  58899999 7763      2333 221 11   24455666667778888999999988 554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.54  E-value=0.0013  Score=58.32  Aligned_cols=145  Identities=13%  Similarity=0.069  Sum_probs=89.6

Q ss_pred             eeEEEecCCCCcEEEEEe-------------------cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-C-CceEEEE-
Q 020480          128 VNRARYMPQNPFLIATKT-------------------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-S-TEGYGLS-  185 (325)
Q Consensus       128 v~~v~~~~~~~~~la~g~-------------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h-~-~~v~~l~-  185 (325)
                      -..+.|+|++ +.+++..                   ...+|.+||+..          .+.+.++.-- . .....+. 
T Consensus       190 ~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~----------~k~~~tI~vg~~g~~P~~i~f  258 (462)
T 2ece_A          190 AYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK----------RKRIHSLTLGEENRMALELRP  258 (462)
T ss_dssp             CCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT----------TEEEEEEESCTTEEEEEEEEE
T ss_pred             cceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCC----------CcEeeEEecCCCCCccceeEe
Confidence            3457889988 5666653                   368999999986          2334444421 1 2334454 


Q ss_pred             -ecCCCCCeEEEEe-----CCCcEEEEeCCCCCCCCcccceEee--e----------------cCCccEEEEEeecCCCc
Q 020480          186 -WSKFKEGHLLSGS-----DDAQICLWDINAAPKNKSLEAMQIF--K----------------VHEGVVEDVAWHLRHEY  241 (325)
Q Consensus       186 -~~p~~~~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~~~~~--~----------------~~~~~v~~v~~~p~~~~  241 (325)
                       |+|++...++++-     .+++|.+|....+..    ...+.+  .                +-......+.++|++..
T Consensus       259 ~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~----~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrf  334 (462)
T 2ece_A          259 LHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW----NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKF  334 (462)
T ss_dssp             CSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE----EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCE
T ss_pred             eECCCCCEEEEEEeeeccCCCceEEEEEecCCce----eEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCE
Confidence             4999995555555     778898877654211    111111  0                00235778999999977


Q ss_pred             EEEEEecCCcEEEEEccCCCCCCCeeEeeccC--------------CCeeEEEeCCCCCc
Q 020480          242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ--------------SEVGVSILNASFRL  287 (325)
Q Consensus       242 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~--------------~~v~~i~~~p~~~~  287 (325)
                      +.++.-..+.|.+||+......+.+..+....              ..-..++++|+|+.
T Consensus       335 LYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~  394 (462)
T 2ece_A          335 LYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRR  394 (462)
T ss_dssp             EEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSE
T ss_pred             EEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCE
Confidence            77777788999999997443222343432211              13578999999984

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.44  E-value=0.001  Score=59.00  Aligned_cols=109  Identities=8%  Similarity=-0.114  Sum_probs=71.1

Q ss_pred             CCCcEEEEEecC----CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe---------CCCc
Q 020480          136 QNPFLIATKTVS----AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS---------DDAQ  202 (325)
Q Consensus       136 ~~~~~la~g~~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s---------~dg~  202 (325)
                      ++...+++...+    +.|.++|..+          .+.+.++..-..+  .+.++|++..++++..         .++.
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t----------~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~  150 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGST----------GRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDY  150 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTT----------TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCC----------CEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCE
Confidence            343344444433    7999999987          4545666544444  8999999995444432         4678


Q ss_pred             EEEEeCCCCCCCCcccceEeeecC-------CccEEEEEeecCCCcEEEEEec-CCcEEEEEccCCCC
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVH-------EGVVEDVAWHLRHEYLFGSVGD-DQYLLIWDLRTPSV  262 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~-------~~~v~~v~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~  262 (325)
                      |.++|..+.+      .+..+.-.       ......+.++|++..++++... ++.|.+.|+.+.+.
T Consensus       151 VsviD~~t~~------vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv  212 (426)
T 3c75_H          151 VEVFDPVTFL------PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF  212 (426)
T ss_dssp             EEEECTTTCC------EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred             EEEEECCCCc------EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE
Confidence            9999998873      33333211       1234568999998644444333 68999999999874

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.43  E-value=0.0098  Score=48.74  Aligned_cols=146  Identities=14%  Similarity=0.180  Sum_probs=88.6

Q ss_pred             ceEEEEEeccCCCe--eEEEecCCCCcEEEEEecCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCC
Q 020480          115 KVQIIQQINHDGEV--NRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK  190 (325)
Q Consensus       115 ~~~~~~~~~h~~~v--~~v~~~~~~~~~la~g~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  190 (325)
                      ..+++..++|...-  ..+.|+ ++ .++.+.+.+|  .|+++|+.+        +  +.+..+.-. .........+.+
T Consensus        30 ~~~vv~~~phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~T--------g--kv~~~~~l~-~~~FgeGit~~g   96 (262)
T 3nol_A           30 DYQIVHSYPHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIES--------G--KTLQQIELG-KRYFGEGISDWK   96 (262)
T ss_dssp             EEEEEEEEECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTT--------C--CEEEEEECC-TTCCEEEEEEET
T ss_pred             ceEEEEEecCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCC--------C--cEEEEEecC-CccceeEEEEeC
Confidence            45777888887554  778888 45 6888888776  899999987        2  334444322 223232222234


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee
Q 020480          191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV  270 (325)
Q Consensus       191 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  270 (325)
                      ..+++..-.++.+.+||..+.+      .+.++.... .-+.++  +++..++++- .++.|.++|..+.+.   +..+.
T Consensus        97 ~~ly~ltw~~~~v~v~D~~t~~------~~~ti~~~~-eG~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~v---~~~I~  163 (262)
T 3nol_A           97 DKIVGLTWKNGLGFVWNIRNLR------QVRSFNYDG-EGWGLT--HNDQYLIMSD-GTPVLRFLDPESLTP---VRTIT  163 (262)
T ss_dssp             TEEEEEESSSSEEEEEETTTCC------EEEEEECSS-CCCCEE--ECSSCEEECC-SSSEEEEECTTTCSE---EEEEE
T ss_pred             CEEEEEEeeCCEEEEEECccCc------EEEEEECCC-CceEEe--cCCCEEEEEC-CCCeEEEEcCCCCeE---EEEEE
Confidence            4355555678999999998873      455554322 223444  4565566554 478899999998774   44432


Q ss_pred             c--cC---CCeeEEEeCCCCCc
Q 020480          271 A--HQ---SEVGVSILNASFRL  287 (325)
Q Consensus       271 ~--h~---~~v~~i~~~p~~~~  287 (325)
                      -  ..   ..++.+.|. +|++
T Consensus       164 V~~~g~~~~~lNELe~~-~G~l  184 (262)
T 3nol_A          164 VTAHGEELPELNELEWV-DGEI  184 (262)
T ss_dssp             CEETTEECCCEEEEEEE-TTEE
T ss_pred             eccCCccccccceeEEE-CCEE
Confidence            2  11   234556665 4554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.42  E-value=0.032  Score=45.79  Aligned_cols=118  Identities=8%  Similarity=0.013  Sum_probs=79.0

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeC--CCc
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSD--DAQ  202 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~--dg~  202 (325)
                      .....+++.+.+..++++-...+.|.++++..        .   ....+. ........++++|++..++++...  .+.
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g--------~---~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~  147 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG--------T---QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPK  147 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------C---SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCE
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCC--------C---CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcE
Confidence            46788999997656777767788999999865        1   122222 222457899999976634444433  468


Q ss_pred             EEEEeCCCCCCCCcccceEee-ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480          203 ICLWDINAAPKNKSLEAMQIF-KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~  261 (325)
                      |..+++....       ...+ ...-.....++++|++..++++-...+.|.++|+....
T Consensus       148 I~~~~~dg~~-------~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~  200 (267)
T 1npe_A          148 IETSHMDGTN-------RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (267)
T ss_dssp             EEEEETTSCC-------CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             EEEEecCCCC-------cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence            8888876432       1111 12234578899999876777777788999999987543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.40  E-value=0.0092  Score=48.96  Aligned_cols=145  Identities=10%  Similarity=0.055  Sum_probs=90.2

Q ss_pred             ceEEEEEeccCCCe--eEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCC
Q 020480          115 KVQIIQQINHDGEV--NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG  192 (325)
Q Consensus       115 ~~~~~~~~~h~~~v--~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~  192 (325)
                      ..+++..+.|...-  ..+.|.. + .++.+.+.+|.|+++|+.+        +  +.+..+.......-.++..  +..
T Consensus        42 ~~~Vv~~~phd~~~ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~T--------g--kv~~~~l~~~~FgeGit~~--g~~  107 (268)
T 3nok_A           42 VAHIIREYPHATNAFTQGLVFHQ-G-HFFESTGHQGTLRQLSLES--------A--QPVWMERLGNIFAEGLASD--GER  107 (268)
T ss_dssp             EEEEEEEEECCTTCCEEEEEEET-T-EEEEEETTTTEEEECCSSC--------S--SCSEEEECTTCCEEEEEEC--SSC
T ss_pred             ceEEEEEEcCCCccccceEEEEC-C-EEEEEcCCCCEEEEEECCC--------C--cEEeEECCCCcceeEEEEe--CCE
Confidence            34667778886544  6788874 3 7888889999999999987        3  3344442211122335554  444


Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeec-
Q 020480          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-  271 (325)
Q Consensus       193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-  271 (325)
                      +++..-.++.+.+||..+.      +.+.++... ..-+.+++  ++..++++ ..++.|.++|..+.+.   +.++.- 
T Consensus       108 Ly~ltw~~~~v~V~D~~Tl------~~~~ti~~~-~eGwGLt~--Dg~~L~vS-dGs~~l~~iDp~T~~v---~~~I~V~  174 (268)
T 3nok_A          108 LYQLTWTEGLLFTWSGMPP------QRERTTRYS-GEGWGLCY--WNGKLVRS-DGGTMLTFHEPDGFAL---VGAVQVK  174 (268)
T ss_dssp             EEEEESSSCEEEEEETTTT------EEEEEEECS-SCCCCEEE--ETTEEEEE-CSSSEEEEECTTTCCE---EEEEECE
T ss_pred             EEEEEccCCEEEEEECCcC------cEEEEEeCC-CceeEEec--CCCEEEEE-CCCCEEEEEcCCCCeE---EEEEEeC
Confidence            6666678899999999887      345555432 22345554  45445544 5689999999998874   444422 


Q ss_pred             -cC---CCeeEEEeCCCCCc
Q 020480          272 -HQ---SEVGVSILNASFRL  287 (325)
Q Consensus       272 -h~---~~v~~i~~~p~~~~  287 (325)
                       +.   ..++.+.|. +|++
T Consensus       175 ~~g~~v~~lNeLe~~-dG~l  193 (268)
T 3nok_A          175 LRGQPVELINELECA-NGVI  193 (268)
T ss_dssp             ETTEECCCEEEEEEE-TTEE
T ss_pred             CCCcccccccccEEe-CCEE
Confidence             21   234566666 4554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.36  E-value=0.01  Score=48.96  Aligned_cols=144  Identities=6%  Similarity=0.039  Sum_probs=90.5

Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCC
Q 020480          130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDIN  209 (325)
Q Consensus       130 ~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~  209 (325)
                      .+.+.  +..++++.-.++.+.++|..+          .+.+.++..-...-..++  +++. .++.+..++.|.++|..
T Consensus        70 Gi~~~--g~~lyv~t~~~~~v~viD~~t----------~~v~~~i~~g~~~g~glt--~Dg~-~l~vs~gs~~l~viD~~  134 (266)
T 2iwa_A           70 GLTLL--NEKLYQVVWLKNIGFIYDRRT----------LSNIKNFTHQMKDGWGLA--TDGK-ILYGSDGTSILYEIDPH  134 (266)
T ss_dssp             EEEEE--TTEEEEEETTCSEEEEEETTT----------TEEEEEEECCSSSCCEEE--ECSS-SEEEECSSSEEEEECTT
T ss_pred             EEEEe--CCEEEEEEecCCEEEEEECCC----------CcEEEEEECCCCCeEEEE--ECCC-EEEEECCCCeEEEEECC
Confidence            34444  436677777789999999987          344555542212333444  4666 45555678999999998


Q ss_pred             CCCCCCcccceEeee--cCC---ccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc------------
Q 020480          210 AAPKNKSLEAMQIFK--VHE---GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH------------  272 (325)
Q Consensus       210 ~~~~~~~~~~~~~~~--~~~---~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h------------  272 (325)
                      +.+.      +..+.  ...   ..++.+.|. ++ .+++....++.|.+.|..+++.   +..+...            
T Consensus       135 t~~v------~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V---~~~I~~~g~~~~~~~~~~~  203 (266)
T 2iwa_A          135 TFKL------IKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTL---LGWILLPNLRKKLIDEGFR  203 (266)
T ss_dssp             TCCE------EEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCE---EEEEECHHHHHHHHHTTCT
T ss_pred             CCcE------EEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcE---EEEEECCCccccccccccc
Confidence            7632      22222  111   236778888 55 5777776789999999999884   5555321            


Q ss_pred             -CCCeeEEEeCCCCC-c--cCCCCceEEeee
Q 020480          273 -QSEVGVSILNASFR-L--SHEDTCTCTHRH  299 (325)
Q Consensus       273 -~~~v~~i~~~p~~~-~--~~~~d~~~~~~~  299 (325)
                       ....+.|+|+|++. +  ++.....+..-+
T Consensus       204 ~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~  234 (266)
T 2iwa_A          204 DIDVLNGIAWDQENKRIFVTGKLWPKLFEIK  234 (266)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred             ccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence             13568999999876 2  444444444433

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.34  E-value=0.0037  Score=54.54  Aligned_cols=159  Identities=14%  Similarity=0.008  Sum_probs=92.7

Q ss_pred             EEEEEeccCCCeeEEEecCCCCcEEEEEe---------cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-------CCc
Q 020480          117 QIIQQINHDGEVNRARYMPQNPFLIATKT---------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-------STE  180 (325)
Q Consensus       117 ~~~~~~~h~~~v~~v~~~~~~~~~la~g~---------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h-------~~~  180 (325)
                      +.+..+.....-. +.++|++..++++..         .++.|.+||..+          .+.+..+.--       ...
T Consensus        70 ~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t----------~~v~~~I~v~~g~r~~~g~~  138 (386)
T 3sjl_D           70 RVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT----------LLPTADIELPDAPRFLVGTY  138 (386)
T ss_dssp             EEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT----------CCEEEEEEETTCCCCCBSCC
T ss_pred             eEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC----------CeEEEEEECCCccccccCCC
Confidence            3334444332234 999999954545432         367899999987          3444444311       124


Q ss_pred             eEEEEecCCCCCeEEEEeC--CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEcc
Q 020480          181 GYGLSWSKFKEGHLLSGSD--DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR  258 (325)
Q Consensus       181 v~~l~~~p~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~  258 (325)
                      ...+.++|++. +++.+..  ++.|.++|+.+.+      .+..+.-..  +  .-..|.+...+++.+.||.+.+.++.
T Consensus       139 P~~~a~spDGk-~lyVan~~~~~~VsVID~~t~~------vv~tI~v~g--~--~~~~P~g~~~~~~~~~DG~~~~v~~~  207 (386)
T 3sjl_D          139 PWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKA------FKRMLDVPD--C--YHIFPTAPDTFFMHCRDGSLAKVAFG  207 (386)
T ss_dssp             GGGEEECTTSS-EEEEEECSSSCEEEEEETTTTE------EEEEEECCS--E--EEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             CceEEEcCCCC-EEEEEEcCCCCeEEEEECCCCc------EEEEEECCC--c--ceeecCCCceeEEECCCCCEEEEECC
Confidence            56799999999 5665553  6899999999873      344443211  1  12235555677788889999999987


Q ss_pred             C-CCCCCCeeEeecc----CCCe-eEEEeC-CCCCc-cCCCCceEEeeec
Q 020480          259 T-PSVSKPVQSVVAH----QSEV-GVSILN-ASFRL-SHEDTCTCTHRHS  300 (325)
Q Consensus       259 ~-~~~~~~~~~~~~h----~~~v-~~i~~~-p~~~~-~~~~d~~~~~~~~  300 (325)
                      . ++.   ......+    ..++ ....|. ++|++ ..+.++.+.+.+.
T Consensus       208 ~~g~v---~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~  254 (386)
T 3sjl_D          208 TEGTP---EITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDL  254 (386)
T ss_dssp             SSSCC---EEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEEC
T ss_pred             CCCeE---EEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEEC
Confidence            6 442   2111111    1222 123553 56753 3444566666554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.34  E-value=0.063  Score=46.21  Aligned_cols=144  Identities=7%  Similarity=-0.002  Sum_probs=91.7

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      .....+..++|.+.+..++.+-...+.|..+++..        .  .....+.........+++.+.+..++++-...+.
T Consensus        70 ~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g--------~--~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~  139 (349)
T 3v64_C           70 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNG--------S--NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSR  139 (349)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------C--SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTE
T ss_pred             cCCCceEEEEEeccccEEEEEeccCCceEEEecCC--------C--CceEEEeCCCCCccEEEEecCCCeEEEEcCCCCe
Confidence            34455789999987656777766778999999876        1  1122222222345688888766546677777789


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC-CcEEEEEccCCCCCCCeeEe-eccCCCeeEEE
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-QYLLIWDLRTPSVSKPVQSV-VAHQSEVGVSI  280 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~-~~h~~~v~~i~  280 (325)
                      |.+.++.....      .......-.....++++|.+..++.+-... +.|..+++....    ...+ ...-...+.|+
T Consensus       140 I~~~~~dG~~~------~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~----~~~~~~~~~~~PnGla  209 (349)
T 3v64_C          140 IEVANLDGAHR------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG----RRIIADTHLFWPNGLT  209 (349)
T ss_dssp             EEEEETTSCSC------EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS----CEESCCSSCSCEEEEE
T ss_pred             EEEEcCCCCce------EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC----cEEEEECCCCCcceEE
Confidence            99999875421      112222334578999999765666666666 788888887544    2222 22234568899


Q ss_pred             eCCCCC
Q 020480          281 LNASFR  286 (325)
Q Consensus       281 ~~p~~~  286 (325)
                      |+|++.
T Consensus       210 ~d~~~~  215 (349)
T 3v64_C          210 IDYAGR  215 (349)
T ss_dssp             EETTTT
T ss_pred             EeCCCC
Confidence            997443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.24  E-value=0.046  Score=44.24  Aligned_cols=125  Identities=13%  Similarity=0.080  Sum_probs=80.8

Q ss_pred             CceEEEEEeccCCC--eeEEEecCCCCcEEEEEecCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceEEEEecC
Q 020480          114 GKVQIIQQINHDGE--VNRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSWSK  188 (325)
Q Consensus       114 ~~~~~~~~~~h~~~--v~~v~~~~~~~~~la~g~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p  188 (325)
                      ...+++..++|...  ...+.|.+ + .++.+.+..|  .|+.+|+.+        +  +.+..+.-.. ...-.++.. 
T Consensus         7 ~~~~v~~~~phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~t--------g--kv~~~~~l~~~~fgeGi~~~-   73 (243)
T 3mbr_X            7 QGYRVVKRYPHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLET--------G--RILQRAEVPPPYFGAGIVAW-   73 (243)
T ss_dssp             CCEEEEEEEECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTT--------C--CEEEEEECCTTCCEEEEEEE-
T ss_pred             cceEEEEEcCCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCC--------C--CEEEEEeCCCCcceeEEEEe-
Confidence            35678888898754  55899987 4 6777777754  899999987        2  3344433211 112334443 


Q ss_pred             CCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC
Q 020480          189 FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV  262 (325)
Q Consensus       189 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  262 (325)
                       +..+++..-.++.+.+||..+.      ..+.++.... .-+.++  +++..+++|- .++.|.++|..+.+.
T Consensus        74 -~~~ly~ltw~~~~v~v~D~~tl------~~~~ti~~~~-~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~  136 (243)
T 3mbr_X           74 -RDRLIQLTWRNHEGFVYDLATL------TPRARFRYPG-EGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQ  136 (243)
T ss_dssp             -TTEEEEEESSSSEEEEEETTTT------EEEEEEECSS-CCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCE
T ss_pred             -CCEEEEEEeeCCEEEEEECCcC------cEEEEEeCCC-CceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeE
Confidence             4436666667899999999886      3455554322 224454  4565566554 588999999998774

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.24  E-value=0.0096  Score=54.60  Aligned_cols=163  Identities=7%  Similarity=-0.073  Sum_probs=101.7

Q ss_pred             EeccCCCeeEEEe-c-CCCCcEEEEEe------------------cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc
Q 020480          121 QINHDGEVNRARY-M-PQNPFLIATKT------------------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE  180 (325)
Q Consensus       121 ~~~h~~~v~~v~~-~-~~~~~~la~g~------------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~  180 (325)
                      .+........+++ . |++. ++.+++                  .++.+.+.|..+          .+...++.--. .
T Consensus       129 ~ip~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t----------~~v~~qI~Vgg-~  196 (595)
T 1fwx_A          129 EIPNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADK----------WEVAWQVLVSG-N  196 (595)
T ss_dssp             ECSSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTT----------TEEEEEEEESS-C
T ss_pred             eCCCCCCCcceeeeecCCCc-EEEEecccccccCCCCcccccccccCceEEEEECCC----------CeEEEEEEeCC-C
Confidence            5555567788887 4 7774 555553                  345788888876          34444443211 3


Q ss_pred             eEEEEecCCCCCeEEEEeCCC--------------------------------------cEEEEeCCCCCCCCcccc-eE
Q 020480          181 GYGLSWSKFKEGHLLSGSDDA--------------------------------------QICLWDINAAPKNKSLEA-MQ  221 (325)
Q Consensus       181 v~~l~~~p~~~~~l~s~s~dg--------------------------------------~i~iwd~~~~~~~~~~~~-~~  221 (325)
                      ...++.+|++. ++++.+.+.                                      .|.|.|.++...    .. +.
T Consensus       197 pd~~~~spdGk-~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~----~~~~~  271 (595)
T 1fwx_A          197 LDNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS----SLFTR  271 (595)
T ss_dssp             CCCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGC----CSSEE
T ss_pred             ccceEECCCCC-EEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCC----ceeEE
Confidence            45677899888 555555332                                      366666665211    11 22


Q ss_pred             eeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC-----CC----CeeEeeccCCCeeEEEeCCCCCc--cCC
Q 020480          222 IFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-----SK----PVQSVVAHQSEVGVSILNASFRL--SHE  290 (325)
Q Consensus       222 ~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-----~~----~~~~~~~h~~~v~~i~~~p~~~~--~~~  290 (325)
                      .+.. .....++.++|+|..+++++..+..|.++|+.+.+.     ..    .+..+ .-......++|+|+|.+  +.-
T Consensus       272 ~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~  349 (595)
T 1fwx_A          272 YIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLF  349 (595)
T ss_dssp             EEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTSEEEEEET
T ss_pred             EEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCCeEEEEEe
Confidence            2221 224567899999988888888999999999996420     00    11122 22345788999999963  566


Q ss_pred             CCceEEeeecce
Q 020480          291 DTCTCTHRHSRY  302 (325)
Q Consensus       291 ~d~~~~~~~~~~  302 (325)
                      .|+++..|++..
T Consensus       350 ldsqV~kwdi~~  361 (595)
T 1fwx_A          350 LDSQVVKWNIED  361 (595)
T ss_dssp             TTTEEEEEEHHH
T ss_pred             cCCcEEEEEhhH
Confidence            788888898754

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.24  E-value=0.044  Score=47.90  Aligned_cols=143  Identities=7%  Similarity=-0.036  Sum_probs=89.9

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      .....+..++|.+.+..++.+-...+.|+.+++..           .....+ .........+++.+.+..++++-...+
T Consensus       113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g-----------~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~  181 (386)
T 3v65_B          113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNG-----------SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTS  181 (386)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-----------CCEEEEECSSCSCCCCEEEETTTTEEEEEETTTT
T ss_pred             cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCC-----------CCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCC
Confidence            34456788999986656777766778999999875           112222 222234567888876664667767778


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC-CcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-QYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      .|.+.++.....      ...+...-.....++++|.+..++.+-... +.|..+++.....   .......-...+.|+
T Consensus       182 ~I~~~~~dg~~~------~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~~~~~~~~~PnGla  252 (386)
T 3v65_B          182 RIEVANLDGAHR------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR---RIIADTHLFWPNGLT  252 (386)
T ss_dssp             EEEECBTTSCSC------EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EEEECSSCSCEEEEE
T ss_pred             eEEEEeCCCCce------EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc---EEEEECCCCCeeeEE
Confidence            899988875421      112222335678999999766666666555 7888888765442   222222234568899


Q ss_pred             eCCCC
Q 020480          281 LNASF  285 (325)
Q Consensus       281 ~~p~~  285 (325)
                      |+|++
T Consensus       253 vd~~~  257 (386)
T 3v65_B          253 IDYAG  257 (386)
T ss_dssp             EEGGG
T ss_pred             EeCCC
Confidence            98644

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.18  E-value=0.015  Score=47.71  Aligned_cols=137  Identities=11%  Similarity=0.127  Sum_probs=85.7

Q ss_pred             CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  204 (325)
                      ..........+.+..++++.-.++.+.+||..+          .+.+.++.. ...-..++  +++. .|+.+..++.|.
T Consensus        84 ~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t----------~~~~~ti~~-~~eG~glt--~dg~-~L~~SdGs~~i~  149 (262)
T 3nol_A           84 GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN----------LRQVRSFNY-DGEGWGLT--HNDQ-YLIMSDGTPVLR  149 (262)
T ss_dssp             CTTCCEEEEEEETTEEEEEESSSSEEEEEETTT----------CCEEEEEEC-SSCCCCEE--ECSS-CEEECCSSSEEE
T ss_pred             CCccceeEEEEeCCEEEEEEeeCCEEEEEECcc----------CcEEEEEEC-CCCceEEe--cCCC-EEEEECCCCeEE
Confidence            334444333334545666666789999999987          444555653 22334454  4565 455556678899


Q ss_pred             EEeCCCCCCCCcccceEeeec--CC---ccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc-------
Q 020480          205 LWDINAAPKNKSLEAMQIFKV--HE---GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-------  272 (325)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~--~~---~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-------  272 (325)
                      ++|..+.+.      +..+.-  ..   ..++.+.|. ++ .+++..-.++.|.+.|.++++.   +..+...       
T Consensus       150 ~iDp~T~~v------~~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V---~~~Id~~~L~~~~~  218 (262)
T 3nol_A          150 FLDPESLTP------VRTITVTAHGEELPELNELEWV-DG-EIFANVWQTNKIVRIDPETGKV---TGIIDLNGILAEAG  218 (262)
T ss_dssp             EECTTTCSE------EEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCBE---EEEEECTTGGGGSC
T ss_pred             EEcCCCCeE------EEEEEeccCCccccccceeEEE-CC-EEEEEEccCCeEEEEECCCCcE---EEEEECCcCccccc
Confidence            999987643      222221  11   335567776 55 5777776789999999999884   4444321       


Q ss_pred             -----CCCeeEEEeCCCCC
Q 020480          273 -----QSEVGVSILNASFR  286 (325)
Q Consensus       273 -----~~~v~~i~~~p~~~  286 (325)
                           ..-.+.|||+|++.
T Consensus       219 ~~~~~~~vlNGIA~dp~~~  237 (262)
T 3nol_A          219 PLPSPIDVLNGIAWDKEHH  237 (262)
T ss_dssp             SCCSSCCCEEEEEEETTTT
T ss_pred             cccCcCCceEEEEEcCCCC
Confidence                 13568999999765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.12  E-value=0.016  Score=51.31  Aligned_cols=121  Identities=14%  Similarity=0.042  Sum_probs=73.5

Q ss_pred             EEEEEeccCCCeeEEEecCCCCcEEEEEe---------cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-------CCc
Q 020480          117 QIIQQINHDGEVNRARYMPQNPFLIATKT---------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-------STE  180 (325)
Q Consensus       117 ~~~~~~~h~~~v~~v~~~~~~~~~la~g~---------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h-------~~~  180 (325)
                      +.+..+.-...- .+.++|++..++++..         .++.|.++|..+          .+.+..+.--       ...
T Consensus       110 ~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t----------~~vv~~I~v~g~~r~~~g~~  178 (426)
T 3c75_H          110 RILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT----------FLPIADIELPDAPRFLVGTY  178 (426)
T ss_dssp             EEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT----------CCEEEEEEETTCCCCCBSCC
T ss_pred             EEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC----------CcEEEEEECCCccccccCCC
Confidence            333444433233 8999999954554432         467899999987          3444444311       123


Q ss_pred             eEEEEecCCCCCeEEEEeC--CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEcc
Q 020480          181 GYGLSWSKFKEGHLLSGSD--DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR  258 (325)
Q Consensus       181 v~~l~~~p~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~  258 (325)
                      ...+.++|++. +++.+..  ++.|.+.|+.+.+      .+..+.--.  .  ....|.+...+++.+.||.+.+.++.
T Consensus       179 P~~~~~spDGk-~lyV~n~~~~~~VsVID~~t~k------vv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~  247 (426)
T 3c75_H          179 QWMNALTPDNK-NLLFYQFSPAPAVGVVDLEGKT------FDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFA  247 (426)
T ss_dssp             GGGSEECTTSS-EEEEEECSSSCEEEEEETTTTE------EEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECC
T ss_pred             cceEEEcCCCC-EEEEEecCCCCeEEEEECCCCe------EEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECC
Confidence            56789999999 5666653  6889999999873      333333211  1  22344444566666777777777764


Q ss_pred             C
Q 020480          259 T  259 (325)
Q Consensus       259 ~  259 (325)
                      .
T Consensus       248 ~  248 (426)
T 3c75_H          248 D  248 (426)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.10  E-value=0.043  Score=46.40  Aligned_cols=138  Identities=9%  Similarity=-0.006  Sum_probs=83.0

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec--------------------CCCceEEEE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG--------------------HSTEGYGLS  185 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~--------------------h~~~v~~l~  185 (325)
                      .....+++.+++ +++.++..++.|..|+...        +.   ...+..                    ....+..++
T Consensus        19 ~~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~--------~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~   86 (322)
T 2fp8_A           19 YAPNSFTFDSTN-KGFYTSVQDGRVIKYEGPN--------SG---FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDIS   86 (322)
T ss_dssp             SCCCCEECCTTC-SSEEEECTTSEEEEECCTT--------TC---EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEE
T ss_pred             CCceEEEEcCCC-CEEEEEcCCCeEEEECCCC--------Cc---eEEEecccccccccccccccchhccccCCCCceEE
Confidence            345678899887 6677778889999998765        11   222210                    013578899


Q ss_pred             ecC-CCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEe-eec-CCccEEEEEeec-CCCcEEEEEec-------------
Q 020480          186 WSK-FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI-FKV-HEGVVEDVAWHL-RHEYLFGSVGD-------------  248 (325)
Q Consensus       186 ~~p-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~-~~~~v~~v~~~p-~~~~~l~s~~~-------------  248 (325)
                      +.+ ++.  |+.+...+.|..+|...+..    ..+.. ..+ .....+.+++.+ ++ +++++-..             
T Consensus        87 ~~~~~g~--l~v~d~~~~i~~~d~~~g~~----~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~  159 (322)
T 2fp8_A           87 YNLQNNQ--LYIVDCYYHLSVVGSEGGHA----TQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMD  159 (322)
T ss_dssp             EETTTTE--EEEEETTTEEEEECTTCEEC----EEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHH
T ss_pred             EcCCCCc--EEEEECCCCEEEEeCCCCEE----EEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehc
Confidence            997 554  55555555688888764321    11111 111 113478899999 87 56655432             


Q ss_pred             ----CCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC
Q 020480          249 ----DQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR  286 (325)
Q Consensus       249 ----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~  286 (325)
                          ++.|..||..+++    +..+.......+.|+|+|+|.
T Consensus       160 ~~~~~g~v~~~d~~~~~----~~~~~~~~~~p~gia~~~dg~  197 (322)
T 2fp8_A          160 TSDKTGRLIKYDPSTKE----TTLLLKELHVPGGAEVSADSS  197 (322)
T ss_dssp             HTCCCEEEEEEETTTTE----EEEEEEEESCCCEEEECTTSS
T ss_pred             ccCCCceEEEEeCCCCE----EEEeccCCccCcceEECCCCC
Confidence                3678888876654    233222224467899999986

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.95  E-value=0.019  Score=48.45  Aligned_cols=147  Identities=7%  Similarity=-0.056  Sum_probs=90.4

Q ss_pred             CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  204 (325)
                      ...+.++...+++ .+ ..++  +.|..+| ..          ......+......+.++...+++.  +..++.++.+.
T Consensus       176 ~~~~~~~~~d~~g-~l-~v~t--~~l~~~d-~~----------g~~~~~~~~~~~~~~~~~~~~~g~--l~v~t~~~gl~  238 (330)
T 3hxj_A          176 DAITSAASIGKDG-TI-YFGS--DKVYAIN-PD----------GTEKWNFYAGYWTVTRPAISEDGT--IYVTSLDGHLY  238 (330)
T ss_dssp             SCCCSCCEECTTC-CE-EEES--SSEEEEC-TT----------SCEEEEECCSSCCCSCCEECTTSC--EEEEETTTEEE
T ss_pred             CCceeeeEEcCCC-EE-EEEe--CEEEEEC-CC----------CcEEEEEccCCcceeceEECCCCe--EEEEcCCCeEE
Confidence            3456666666666 34 4444  7788898 43          122334444445677788887765  66677788888


Q ss_pred             EEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCC
Q 020480          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNAS  284 (325)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~  284 (325)
                      .+|.. +      ..+..+......+..+...+++  .+..++.+|.|..+|. +++   .+..+......+.++...++
T Consensus       239 ~~~~~-g------~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~-~g~---~~~~~~~~~~~~~~~~~d~~  305 (330)
T 3hxj_A          239 AINPD-G------TEKWRFKTGKRIESSPVIGNTD--TIYFGSYDGHLYAINP-DGT---EKWNFETGSWIIATPVIDEN  305 (330)
T ss_dssp             EECTT-S------CEEEEEECSSCCCSCCEECTTS--CEEEECTTCEEEEECT-TSC---EEEEEECSSCCCSCCEECTT
T ss_pred             EECCC-C------CEeEEeeCCCCccccceEcCCC--eEEEecCCCCEEEECC-CCc---EEEEEEcCCccccceEEcCC
Confidence            88743 2      1233343333334445555544  4567888889999995 444   24555444556778888888


Q ss_pred             CCc-cCCCCceEEeeecc
Q 020480          285 FRL-SHEDTCTCTHRHSR  301 (325)
Q Consensus       285 ~~~-~~~~d~~~~~~~~~  301 (325)
                      |.+ .++.++.+.+....
T Consensus       306 g~l~~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          306 GTIYFGTRNGKFYALFNL  323 (330)
T ss_dssp             CCEEEECTTSCEEEEEC-
T ss_pred             CEEEEEcCCCeEEEEecc
Confidence            886 77778877765443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.95  E-value=0.018  Score=48.50  Aligned_cols=146  Identities=8%  Similarity=-0.057  Sum_probs=88.9

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      ....+.++...+++  .+..|+.++.|..+|...           .....+......+.++...+++.  +..++  +.|
T Consensus       135 ~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~g-----------~~~~~~~~~~~~~~~~~~d~~g~--l~v~t--~~l  197 (330)
T 3hxj_A          135 KKAIYATPIVSEDG--TIYVGSNDNYLYAINPDG-----------TEKWRFKTNDAITSAASIGKDGT--IYFGS--DKV  197 (330)
T ss_dssp             SSCCCSCCEECTTS--CEEEECTTSEEEEECTTS-----------CEEEEEECSSCCCSCCEECTTCC--EEEES--SSE
T ss_pred             CCceeeeeEEcCCC--EEEEEcCCCEEEEECCCC-----------CEeEEEecCCCceeeeEEcCCCE--EEEEe--CEE
Confidence            33445566666665  366677888999998763           22334443444566677766665  44445  889


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCC
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNA  283 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p  283 (325)
                      ..+| ..+.      ....+......+.++...+++ . +..++.++.|..+|. ++.   .+..+......+.++.+.+
T Consensus       198 ~~~d-~~g~------~~~~~~~~~~~~~~~~~~~~g-~-l~v~t~~~gl~~~~~-~g~---~~~~~~~~~~~~~~~~~~~  264 (330)
T 3hxj_A          198 YAIN-PDGT------EKWNFYAGYWTVTRPAISEDG-T-IYVTSLDGHLYAINP-DGT---EKWRFKTGKRIESSPVIGN  264 (330)
T ss_dssp             EEEC-TTSC------EEEEECCSSCCCSCCEECTTS-C-EEEEETTTEEEEECT-TSC---EEEEEECSSCCCSCCEECT
T ss_pred             EEEC-CCCc------EEEEEccCCcceeceEECCCC-e-EEEEcCCCeEEEECC-CCC---EeEEeeCCCCccccceEcC
Confidence            9999 5442      233344444567778887765 3 446677788888874 333   2455544444455677777


Q ss_pred             CCCc-cCCCCceEEeee
Q 020480          284 SFRL-SHEDTCTCTHRH  299 (325)
Q Consensus       284 ~~~~-~~~~d~~~~~~~  299 (325)
                      ++.+ .++.++.+..++
T Consensus       265 ~g~l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          265 TDTIYFGSYDGHLYAIN  281 (330)
T ss_dssp             TSCEEEECTTCEEEEEC
T ss_pred             CCeEEEecCCCCEEEEC
Confidence            7776 566665565555

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.94  E-value=0.014  Score=55.09  Aligned_cols=75  Identities=13%  Similarity=0.009  Sum_probs=49.9

Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc-CCCeeEE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-QSEVGVS  279 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~i  279 (325)
                      |.|..||+.+++      .+..+. +...+....+.+.+ .+++.++.||.+++||.++++.   +..+... .....-+
T Consensus       457 g~l~A~D~~tG~------~~W~~~-~~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D~~tG~~---lw~~~~~~~~~~~p~  525 (677)
T 1kb0_A          457 GRLLAWDPVAQK------AAWSVE-HVSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEK---LWEAPTGTGVVAAPS  525 (677)
T ss_dssp             EEEEEEETTTTE------EEEEEE-ESSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCE---EEEEECSSCCCSCCE
T ss_pred             cEEEEEeCCCCc------EEeecC-CCCCCcCcceEeCC-CEEEEECCCCcEEEEECCCCce---eeeeeCCCCcccCCE
Confidence            779999998874      344433 22334444555665 4677789999999999999984   7776532 2233446


Q ss_pred             EeCCCCC
Q 020480          280 ILNASFR  286 (325)
Q Consensus       280 ~~~p~~~  286 (325)
                      .|.++|+
T Consensus       526 ~y~~~G~  532 (677)
T 1kb0_A          526 TYMVDGR  532 (677)
T ss_dssp             EEEETTE
T ss_pred             EEEeCCE
Confidence            6767776

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.94  E-value=0.04  Score=44.60  Aligned_cols=126  Identities=20%  Similarity=0.210  Sum_probs=82.1

Q ss_pred             CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 020480          136 QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK  215 (325)
Q Consensus       136 ~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~  215 (325)
                      .+.++++..-.++.+.+||..+          .+.+.++.. ...-..+++  ++. .|+.+..++.|.++|..+.+.  
T Consensus        73 ~~~~ly~ltw~~~~v~v~D~~t----------l~~~~ti~~-~~~Gwglt~--dg~-~L~vSdgs~~l~~iDp~t~~~--  136 (243)
T 3mbr_X           73 WRDRLIQLTWRNHEGFVYDLAT----------LTPRARFRY-PGEGWALTS--DDS-HLYMSDGTAVIRKLDPDTLQQ--  136 (243)
T ss_dssp             ETTEEEEEESSSSEEEEEETTT----------TEEEEEEEC-SSCCCEEEE--CSS-CEEEECSSSEEEEECTTTCCE--
T ss_pred             eCCEEEEEEeeCCEEEEEECCc----------CcEEEEEeC-CCCceEEee--CCC-EEEEECCCCeEEEEeCCCCeE--
Confidence            3446777777889999999987          444555553 233456664  455 455556789999999987643  


Q ss_pred             cccceEeeec--CC---ccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc-------------CCCee
Q 020480          216 SLEAMQIFKV--HE---GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-------------QSEVG  277 (325)
Q Consensus       216 ~~~~~~~~~~--~~---~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-------------~~~v~  277 (325)
                          +..+.-  +.   ..++.+.|. ++ .++|..-.+..|.+.|.++++.   +..+...             ..-.+
T Consensus       137 ----~~~I~V~~~g~~~~~lNeLe~~-~G-~lyanvw~s~~I~vIDp~tG~V---~~~idl~~l~~~~~~~~~~~~~vlN  207 (243)
T 3mbr_X          137 ----VGSIKVTAGGRPLDNLNELEWV-NG-ELLANVWLTSRIARIDPASGKV---VAWIDLQALVPDADALTDSTNDVLN  207 (243)
T ss_dssp             ----EEEEECEETTEECCCEEEEEEE-TT-EEEEEETTTTEEEEECTTTCBE---EEEEECGGGSTTTTSCCCTTSSCEE
T ss_pred             ----EEEEEEccCCcccccceeeEEe-CC-EEEEEECCCCeEEEEECCCCCE---EEEEECCcCccccccccCCcCCceE
Confidence                222221  21   245667776 44 5776666788999999999884   4444311             13568


Q ss_pred             EEEeCCCCC
Q 020480          278 VSILNASFR  286 (325)
Q Consensus       278 ~i~~~p~~~  286 (325)
                      .|+|+|++.
T Consensus       208 GIA~d~~~~  216 (243)
T 3mbr_X          208 GIAFDAEHD  216 (243)
T ss_dssp             EEEEETTTT
T ss_pred             EEEEcCCCC
Confidence            999999754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.90  E-value=0.035  Score=45.51  Aligned_cols=126  Identities=11%  Similarity=0.167  Sum_probs=83.3

Q ss_pred             CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 020480          136 QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK  215 (325)
Q Consensus       136 ~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~  215 (325)
                      .+..++++.-.++.+.+||..+          .+.+.++.. ....+.+++  ++. .|+.+..++.|.++|..+.+.  
T Consensus       104 ~g~~Ly~ltw~~~~v~V~D~~T----------l~~~~ti~~-~~eGwGLt~--Dg~-~L~vSdGs~~l~~iDp~T~~v--  167 (268)
T 3nok_A          104 DGERLYQLTWTEGLLFTWSGMP----------PQRERTTRY-SGEGWGLCY--WNG-KLVRSDGGTMLTFHEPDGFAL--  167 (268)
T ss_dssp             CSSCEEEEESSSCEEEEEETTT----------TEEEEEEEC-SSCCCCEEE--ETT-EEEEECSSSEEEEECTTTCCE--
T ss_pred             eCCEEEEEEccCCEEEEEECCc----------CcEEEEEeC-CCceeEEec--CCC-EEEEECCCCEEEEEcCCCCeE--
Confidence            3445777767789999999987          444555553 233355554  455 566666789999999987643  


Q ss_pred             cccceEeee--cCC---ccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc-------------CCCee
Q 020480          216 SLEAMQIFK--VHE---GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-------------QSEVG  277 (325)
Q Consensus       216 ~~~~~~~~~--~~~---~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-------------~~~v~  277 (325)
                          +..+.  .+.   ..++.+.|. +| .++|..-.+..|.+.|.++++.   +..+...             ..-.+
T Consensus       168 ----~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s~~I~vIDp~TG~V---~~~Idl~~L~~~~~~~~~~~~~vlN  238 (268)
T 3nok_A          168 ----VGAVQVKLRGQPVELINELECA-NG-VIYANIWHSSDVLEIDPATGTV---VGVIDASALTRAVAGQVTNPEAVLN  238 (268)
T ss_dssp             ----EEEEECEETTEECCCEEEEEEE-TT-EEEEEETTCSEEEEECTTTCBE---EEEEECHHHHHHHTTTCCCTTCCEE
T ss_pred             ----EEEEEeCCCCcccccccccEEe-CC-EEEEEECCCCeEEEEeCCCCcE---EEEEECCCCcccccccccCcCCceE
Confidence                22222  122   245677777 55 5777776788999999999984   4444321             13569


Q ss_pred             EEEeCCCCC
Q 020480          278 VSILNASFR  286 (325)
Q Consensus       278 ~i~~~p~~~  286 (325)
                      .|||+|++.
T Consensus       239 GIA~dp~~~  247 (268)
T 3nok_A          239 GIAVEPGSG  247 (268)
T ss_dssp             EEEECTTTC
T ss_pred             EEEEcCCCC
Confidence            999999754

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.76  E-value=0.15  Score=48.73  Aligned_cols=118  Identities=14%  Similarity=0.052  Sum_probs=64.2

Q ss_pred             eeEEEecCCCCcEEEEEecC-----CeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeC--
Q 020480          128 VNRARYMPQNPFLIATKTVS-----AEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSD--  199 (325)
Q Consensus       128 v~~v~~~~~~~~~la~g~~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~--  199 (325)
                      ...+.|+|++. .|+....+     ..|+++++.+        +.......+. .......++.|+|++..++++...  
T Consensus       223 ~~~~~WspDg~-~l~y~~~d~~~~~~~v~~~~lgt--------~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  293 (751)
T 2xe4_A          223 NGEIVWGPDHT-SLFYVTKDETLRENKVWRHVMGK--------LQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPE  293 (751)
T ss_dssp             CSCCEECSSTT-EEEEEEECTTCCEEEEEEEETTS--------CGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSS
T ss_pred             eeeEEEecCCC-EEEEEEECCCCCCCEEEEEECCC--------CchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCC
Confidence            34678999985 44444443     3677888765        2112223333 233456788999999944444432  


Q ss_pred             CCcEEEEeCCCCCCCCcccc-eEee-ecCCccEEEEEeecCCCcEEEEEecC--C--cEEEEEccC
Q 020480          200 DAQICLWDINAAPKNKSLEA-MQIF-KVHEGVVEDVAWHLRHEYLFGSVGDD--Q--YLLIWDLRT  259 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~-~~~~-~~~~~~v~~v~~~p~~~~~l~s~~~d--g--~i~iwd~~~  259 (325)
                      ...|.++|+..+...    . +..+ .........+.|+. +..+++....+  +  .|..+|+.+
T Consensus       294 ~~~l~~~d~~~~~~~----~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          294 TAEVHLLDLRKGNAH----NTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             CEEEEEEESSSCTTC----CCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CceEEEEECCCCCCC----ceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            345788888765211    1 0222 22334455666554 44555555544  3  455556554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.73  E-value=0.18  Score=41.17  Aligned_cols=149  Identities=9%  Similarity=0.071  Sum_probs=89.7

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      -...+..++|+|++..++++...++.|...|...           ..+.++. +-..-.-.|++.+++. ++++.-.++.
T Consensus        25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g-----------~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~E~~~~   92 (255)
T 3qqz_A           25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG-----------DLIRTIPLDFVKDLETIEYIGDNQ-FVISDERDYA   92 (255)
T ss_dssp             CCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC-----------CEEEEEECSSCSSEEEEEECSTTE-EEEEETTTTE
T ss_pred             cccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC-----------CEEEEEecCCCCChHHeEEeCCCE-EEEEECCCCc
Confidence            4467999999998767888888888999998864           3344442 2224577889988776 6666667788


Q ss_pred             EEEEeCCCCCCCCcccceE-ee--ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee-------cc
Q 020480          203 ICLWDINAAPKNKSLEAMQ-IF--KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV-------AH  272 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~-~~--~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~h  272 (325)
                      +.++++............. .+  ...+.....++|+|.+..++++.-.+ ...+|.+........+..+.       .+
T Consensus        93 l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~l~i~~~~~~~~~~~  171 (255)
T 3qqz_A           93 IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNELHISKDKALQRQFT  171 (255)
T ss_dssp             EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSCCEEEECHHHHHTCC
T ss_pred             EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCceeeecchhhccccc
Confidence            9999887553211111111 01  12345678999999876555544444 44555554210000122221       12


Q ss_pred             CCCeeEEEeCCCC
Q 020480          273 QSEVGVSILNASF  285 (325)
Q Consensus       273 ~~~v~~i~~~p~~  285 (325)
                      ...+.+++++|..
T Consensus       172 ~~d~S~l~~dp~t  184 (255)
T 3qqz_A          172 LDDVSGAEFNQQK  184 (255)
T ss_dssp             SSCCCEEEEETTT
T ss_pred             cCCceeEEEcCCC
Confidence            3457899999854

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.72  E-value=0.068  Score=47.45  Aligned_cols=150  Identities=7%  Similarity=0.026  Sum_probs=87.0

Q ss_pred             CeeEEEecC-CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC-CC---
Q 020480          127 EVNRARYMP-QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-DA---  201 (325)
Q Consensus       127 ~v~~v~~~~-~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-dg---  201 (325)
                      ....++++| ++..++++ ...+.|+.+|+..           ..+..+.........++|++++. .|+.+.. ++   
T Consensus       138 ~P~~lavdp~~~g~Lyv~-d~~~~I~~id~~~-----------~~v~~~~~~~~~P~~ia~d~~G~-~lyvad~~~~~~~  204 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLV-GEQHPTRLIDFEK-----------EYVSTVYSGLSKVRTICWTHEAD-SMIITNDQNNNDR  204 (430)
T ss_dssp             CCCEEEEETTEEEEEEEE-EBTEEEEEEETTT-----------TEEEEEECCCSCEEEEEECTTSS-EEEEEECCSCTTS
T ss_pred             CCCEEEECCCCCCeEEEE-eCCCcEEEEECCC-----------CEEEEEecCCCCcceEEEeCCCC-EEEEEeCCCCccc
Confidence            346788987 34244444 4447888898875           22334444455688999999988 4555443 22   


Q ss_pred             -cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeec--cCCCeeE
Q 020480          202 -QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA--HQSEVGV  278 (325)
Q Consensus       202 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~  278 (325)
                       .+.+.+.. +..    .....+.. ......++++|++..++++-...+.|..++.....    ...+..  .....+.
T Consensus       205 ~~v~~~~~~-g~~----~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~----~~~~~~~~~~~~P~g  274 (430)
T 3tc9_A          205 PNNYILTRE-SGF----KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE----TTPLFTIQDSGWEFH  274 (430)
T ss_dssp             EEEEEEEGG-GTS----CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE----EEEEEECSSSSCCEE
T ss_pred             ceEEEEeCC-Cce----eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc----EEEEEEcCCCCccee
Confidence             23334433 211    11112221 23456788999444677777788899999987654    212211  1235678


Q ss_pred             EEeCCCCC-c--cCCCCceEEeee
Q 020480          279 SILNASFR-L--SHEDTCTCTHRH  299 (325)
Q Consensus       279 i~~~p~~~-~--~~~~d~~~~~~~  299 (325)
                      |+|+|+|. +  +......+..++
T Consensus       275 ia~~pdG~~lyv~d~~~~~I~~~~  298 (430)
T 3tc9_A          275 IQFHPSGNYAYIVVVNQHYILRSD  298 (430)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCCEEEEEECCCCEEEEEe
Confidence            99999998 4  333444555543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.71  E-value=0.22  Score=41.97  Aligned_cols=149  Identities=9%  Similarity=-0.015  Sum_probs=89.2

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      +........++|.+.+..++.+-...+.|..+++.....      .......+...-.....+++.+.+..++++-...+
T Consensus        26 ~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~------~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~   99 (316)
T 1ijq_A           26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG   99 (316)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred             hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC------CcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCC
Confidence            344456788999987656777767778999999864100      00111122222234578888875554666667788


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC-CcEEEEEccCCCCCCCeeEe-eccCCCeeEE
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-QYLLIWDLRTPSVSKPVQSV-VAHQSEVGVS  279 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~-~~h~~~v~~i  279 (325)
                      .|.+.++....      ........-.....++++|.+..++++.... +.|..+++....    ...+ ...-...+.|
T Consensus       100 ~I~~~~~~g~~------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~----~~~~~~~~~~~P~gl  169 (316)
T 1ijq_A          100 TVSVADTKGVK------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----IYSLVTENIQWPNGI  169 (316)
T ss_dssp             EEEEEETTSSS------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC----EEEEECSSCSCEEEE
T ss_pred             EEEEEeCCCCc------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC----eEEEEECCCCCceEE
Confidence            99999987531      1112222334678999999765666665443 778888875433    2322 2223457889


Q ss_pred             EeCCCCC
Q 020480          280 ILNASFR  286 (325)
Q Consensus       280 ~~~p~~~  286 (325)
                      +++|++.
T Consensus       170 a~d~~~~  176 (316)
T 1ijq_A          170 TLDLLSG  176 (316)
T ss_dssp             EEETTTT
T ss_pred             EEeccCC
Confidence            9997543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.70  E-value=0.25  Score=42.38  Aligned_cols=137  Identities=6%  Similarity=-0.072  Sum_probs=86.3

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC-CcEEE
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD-AQICL  205 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-g~i~i  205 (325)
                      ....+++.+.+.+++.+-...+.|.+.++..        .  .....+...-.....++++|.+..++++-... +.|..
T Consensus       117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG--------~--~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r  186 (349)
T 3v64_C          117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDG--------A--HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEA  186 (349)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTS--------C--SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             CccEEEEecCCCeEEEEcCCCCeEEEEcCCC--------C--ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEE
Confidence            4567888876656777767778999999875        1  11122223335678999999766456665555 78888


Q ss_pred             EeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeC
Q 020480          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN  282 (325)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~  282 (325)
                      .++.....      .......-...+.++++|.+..++++-...+.|..+|+.....   ...+.........|++.
T Consensus       187 ~~~dG~~~------~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~---~~~~~~~~~~P~giav~  254 (349)
T 3v64_C          187 SSMDGSGR------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---KAVISQGLPHPFAITVF  254 (349)
T ss_dssp             EETTSCSC------EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSSEEEEEEE
T ss_pred             EeCCCCCc------EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce---EEEEeCCCCCceEEEEE
Confidence            88875321      1111222345788999987767777777788999999875432   22222223345667764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.66  E-value=0.3  Score=42.81  Aligned_cols=150  Identities=9%  Similarity=-0.021  Sum_probs=91.0

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      ......+..++|.+.+..++.+-...+.|+.+++.....      .......+.........+++.+.+..++++-...+
T Consensus       108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~------~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~  181 (400)
T 3p5b_L          108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG  181 (400)
T ss_dssp             ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC------CCcceEEEeCCCCCcccEEEEecCCceEEEECCCC
Confidence            345567789999987656666666678898888764100      01112222223456778888875554667767788


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec-CCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-DQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      .|.+.++....      ....+...-.....++++|.+..++.+-.. .+.|...++.....   .......-...+.|+
T Consensus       182 ~I~~~~~~g~~------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~---~~~~~~~l~~P~gla  252 (400)
T 3p5b_L          182 TVSVADTKGVK------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLVTENIQWPNGIT  252 (400)
T ss_dssp             EEEEECTTTCS------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC---EEEECSSCSCEEEEE
T ss_pred             eEEEEeCCCCc------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc---EEEEECCCCceEEEE
Confidence            99999987542      122223233457899999976556555433 47788888875442   222222234678899


Q ss_pred             eCCCCC
Q 020480          281 LNASFR  286 (325)
Q Consensus       281 ~~p~~~  286 (325)
                      +++.+.
T Consensus       253 vd~~~~  258 (400)
T 3p5b_L          253 LDLLSG  258 (400)
T ss_dssp             EETTTT
T ss_pred             EEeCCC
Confidence            997543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.66  E-value=0.29  Score=42.63  Aligned_cols=138  Identities=6%  Similarity=-0.072  Sum_probs=84.7

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC-CcEEE
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD-AQICL  205 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-g~i~i  205 (325)
                      ....+++.+.+.+++++-...+.|.+.++..          ......+.........+++.|.+..++++-... +.|..
T Consensus       160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg----------~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r  229 (386)
T 3v65_B          160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDG----------AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEA  229 (386)
T ss_dssp             CCCCEEEETTTTEEEEEETTTTEEEECBTTS----------CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             CccEEEEEeCCCeEEEEcCCCCeEEEEeCCC----------CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEE
Confidence            3456777775546667766677888888764          111222223335678999998776455555455 78888


Q ss_pred             EeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCC
Q 020480          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNA  283 (325)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p  283 (325)
                      +++.....      .......-...+.++++|.+..++++-+..+.|..+|+.....   ...+.........|++..
T Consensus       230 ~~~dG~~~------~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~---~~~~~~~~~~P~giav~~  298 (386)
T 3v65_B          230 SSMDGSGR------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---KAVISQGLPHPFAITVFE  298 (386)
T ss_dssp             EETTSCSC------EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC---EEEECSSCSSEEEEEEET
T ss_pred             EeCCCCCc------EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee---EEEEECCCCCceEEEEEC
Confidence            88875321      1111222345788999987767777777888899999875432   222222233456677743

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.64  E-value=0.055  Score=51.23  Aligned_cols=76  Identities=9%  Similarity=-0.005  Sum_probs=50.9

Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC-CeeE
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS-EVGV  278 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~  278 (325)
                      +|.|..||+.+++      .+..+..+. .+....+...+ .+++.|+.||.++.||.++++.   +..+..... ...-
T Consensus       454 ~g~l~A~D~~tG~------~~W~~~~~~-~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~~---lw~~~~~~~~~~~p  522 (689)
T 1yiq_A          454 SGKLIAWDPVKQQ------AAWEVPYVT-IFNGGTLSTAG-NLVFEGSADGRVIAYAADTGEK---LWEQPAASGVMAAP  522 (689)
T ss_dssp             EEEEEEEETTTTE------EEEEEEESS-SCCCCEEEETT-TEEEEECTTSEEEEEETTTCCE---EEEEECSSCCCSCC
T ss_pred             ceeEEEEECCCCC------eEeEccCCC-CccCccceECC-CEEEEECCCCcEEEEECCCCcc---ceeeeCCCCcccCc
Confidence            3779999998874      344444332 23333455555 5788899999999999999984   777654322 2245


Q ss_pred             EEeCCCCC
Q 020480          279 SILNASFR  286 (325)
Q Consensus       279 i~~~p~~~  286 (325)
                      +.|..+|+
T Consensus       523 ~ty~~~G~  530 (689)
T 1yiq_A          523 VTYSVDGE  530 (689)
T ss_dssp             EEEEETTE
T ss_pred             eEEEECCE
Confidence            67778887

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.60  E-value=0.0075  Score=52.43  Aligned_cols=102  Identities=8%  Similarity=-0.197  Sum_probs=67.8

Q ss_pred             cEEEEEecCC----eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe----------CCCcEE
Q 020480          139 FLIATKTVSA----EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS----------DDAQIC  204 (325)
Q Consensus       139 ~~la~g~~dg----~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s----------~dg~i~  204 (325)
                      ..+++-..++    .|.+.|..+          .+.+.++..-..+  .+.++|++.. ++.+.          .++.|.
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t----------~~v~~~i~vG~~P--~i~~spDg~~-lyVan~~~~r~~~G~~~~~Vs   99 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGC----------GVTLGHSLGAFLS--LAVAGHSGSD-FALASTSFARSAKGKRTDYVE   99 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTT----------TEEEEEEEECTTC--EEEECTTSSC-EEEEEEEETTTTSSSEEEEEE
T ss_pred             eEEEECCccCCccceEEEEECCC----------CeEEEEEeCCCCC--ceEECCCCCE-EEEEcccccccccCCCCCEEE
Confidence            3445544444    888999887          4556666544445  7999999994 55554          478999


Q ss_pred             EEeCCCCCCCCcccceEeeecC-------CccEEEEEeecCCCcEEEEEec-CCcEEE--EEccC
Q 020480          205 LWDINAAPKNKSLEAMQIFKVH-------EGVVEDVAWHLRHEYLFGSVGD-DQYLLI--WDLRT  259 (325)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~-------~~~v~~v~~~p~~~~~l~s~~~-dg~i~i--wd~~~  259 (325)
                      +||+.+.+      .+..+...       ......++++|++..++++... +..+.+  +|+.+
T Consensus       100 viD~~T~~------vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          100 VFDPVTFL------PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EECTTTCC------EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             EEECCCCC------EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            99999873      34444322       1235578999998655544433 467888  88865

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.58  E-value=0.36  Score=46.34  Aligned_cols=146  Identities=8%  Similarity=-0.020  Sum_probs=87.5

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      ....+..|+|.+.+..++.+-...+.|+.+++.....      .......+.........|++.+.+..++++-...+.|
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~------~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I  495 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV  495 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCC------CcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeE
Confidence            3455678888886546666666677888888764100      0011222332334566888887776577777778999


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC-CcEEEEEccCCCCCCCeeEe-eccCCCeeEEEe
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-QYLLIWDLRTPSVSKPVQSV-VAHQSEVGVSIL  281 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~-~~h~~~v~~i~~  281 (325)
                      .+.++....      ....+...-.....|+++|.+..++++-... +.|...++....    ...+ ...-...+.|++
T Consensus       496 ~v~~ldG~~------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~----~~~lv~~~l~~P~GLav  565 (791)
T 3m0c_C          496 SVADTKGVK------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----IYSLVTENIQWPNGITL  565 (791)
T ss_dssp             EEEETTSSS------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC----EEEEECSSCSCEEEEEE
T ss_pred             EEEeCCCCe------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc----eEEEEeCCCCCceEEEE
Confidence            999987542      1122223334588999999765566555333 778888886544    2333 222346778888


Q ss_pred             CCCC
Q 020480          282 NASF  285 (325)
Q Consensus       282 ~p~~  285 (325)
                      ++.+
T Consensus       566 D~~~  569 (791)
T 3m0c_C          566 DLLS  569 (791)
T ss_dssp             ETTT
T ss_pred             ecCC
Confidence            8543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.53  E-value=0.0084  Score=54.98  Aligned_cols=135  Identities=15%  Similarity=0.152  Sum_probs=80.4

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCC----CCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPS----KPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~----~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  197 (325)
                      +.-.....++.++|+|..+++++..+.+|.++|+.+...    +..  ......... .-......++|+|+| ...++.
T Consensus       273 Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~--~~~~v~~~v-~vG~gP~h~aF~~dG-~aY~t~  348 (595)
T 1fwx_A          273 IPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD--PRSAVVAEP-ELGLGPLHTAFDGRG-NAYTSL  348 (595)
T ss_dssp             EEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCC--GGGGEEECC-BCCSCEEEEEECTTS-EEEEEE
T ss_pred             EecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccC--cccceEEEc-CCCCCcceEEECCCC-eEEEEE
Confidence            333345667899999977788888889999999985100    000  000011112 223457899999999 588889


Q ss_pred             eCCCcEEEEeCCCCCC----CCcccceEeeecCCcc-----EEEEEeecCCCcEEEEEe---cCCcE----------EEE
Q 020480          198 SDDAQICLWDINAAPK----NKSLEAMQIFKVHEGV-----VEDVAWHLRHEYLFGSVG---DDQYL----------LIW  255 (325)
Q Consensus       198 s~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~-----v~~v~~~p~~~~~l~s~~---~dg~i----------~iw  255 (325)
                      ..|+.|.+||+.....    ......+..+..|-..     -..+..+|+|. +|++..   .|+.+          .++
T Consensus       349 ~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk-~l~~~Nk~skdr~~~~gp~~~~~~ql~  427 (595)
T 1fwx_A          349 FLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATND-WLVCLSKFSKDRFLNVGPLKPENDQLI  427 (595)
T ss_dssp             TTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSS-EEEEEESCCTTSSCCCCSSCCEEEEEE
T ss_pred             ecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCC-EEEEcCCCCccccccCCCCCCCcceEE
Confidence            9999999999876210    0001234444444321     12234578885 554443   24332          889


Q ss_pred             EccCCC
Q 020480          256 DLRTPS  261 (325)
Q Consensus       256 d~~~~~  261 (325)
                      |+...+
T Consensus       428 dis~~~  433 (595)
T 1fwx_A          428 DISGDK  433 (595)
T ss_dssp             ECSSSS
T ss_pred             EcCCCc
Confidence            995444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.44  E-value=0.34  Score=40.83  Aligned_cols=118  Identities=11%  Similarity=-0.028  Sum_probs=78.2

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ecCCCceEEEEecCCCCCeEEEEeCC-CcE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RGHSTEGYGLSWSKFKEGHLLSGSDD-AQI  203 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~d-g~i  203 (325)
                      .....+++.+.+.+++++-...+.|.++++..           .....+ ........++++.|.+..++++.... +.|
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g-----------~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I  145 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-----------VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI  145 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTS-----------SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCC-----------CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeE
Confidence            34578888875546777767788999999865           112222 22335678999999766355554433 688


Q ss_pred             EEEeCCCCCCCCcccceEee-ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480          204 CLWDINAAPKNKSLEAMQIF-KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~  261 (325)
                      ...++....       ...+ ...-...+.++++|++..++++-+..+.|..+|+....
T Consensus       146 ~~~~~dG~~-------~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~  197 (316)
T 1ijq_A          146 KKGGLNGVD-------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (316)
T ss_dssp             EEEETTSCC-------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             EEEcCCCCC-------eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc
Confidence            888876431       2222 12234578899999876777777778899999987543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.38  E-value=0.38  Score=40.70  Aligned_cols=141  Identities=8%  Similarity=0.016  Sum_probs=87.0

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEE
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW  206 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iw  206 (325)
                      .+.++.|.+.+..++.+-...+.|..++...        .. .....+...-.....+++.+.+..++++-...+.|.++
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g--------~~-~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~  106 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK--------TE-SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVS  106 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTS--------SS-CCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccC--------CC-ceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEE
Confidence            4668899986656777767778999999876        11 11122222223456788887555466676677899999


Q ss_pred             eCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe-cCCcEEEEEccCCCCCCCeeEe-eccCCCeeEEEeCCC
Q 020480          207 DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DDQYLLIWDLRTPSVSKPVQSV-VAHQSEVGVSILNAS  284 (325)
Q Consensus       207 d~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~i~~~p~  284 (325)
                      ++.....      .............++++|.+..++.+-. ..+.|...++....    ...+ ...-...+.|+|+|+
T Consensus       107 ~~dG~~~------~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~----~~~~~~~~l~~Pnglavd~~  176 (318)
T 3sov_A          107 NLDGSLR------KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS----RFIIINSEIYWPNGLTLDYE  176 (318)
T ss_dssp             ETTSCSC------EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS----CEEEECSSCSCEEEEEEETT
T ss_pred             ECCCCcE------EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC----eEEEEECCCCCccEEEEecc
Confidence            9875421      1112233456788999987555555542 35778888876543    2222 222345688999984


Q ss_pred             CC
Q 020480          285 FR  286 (325)
Q Consensus       285 ~~  286 (325)
                      +.
T Consensus       177 ~~  178 (318)
T 3sov_A          177 EQ  178 (318)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.33  E-value=0.13  Score=49.15  Aligned_cols=141  Identities=12%  Similarity=0.103  Sum_probs=77.6

Q ss_pred             CeeEEEec-CCCCcEEEEE-ecCC----eEEEEeCCCCCCCCCCCC-CCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          127 EVNRARYM-PQNPFLIATK-TVSA----EVYVFDYSKHPSKPPLDG-ACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       127 ~v~~v~~~-~~~~~~la~g-~~dg----~v~vwd~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      .+...+|+ |+| ++||.+ ..+|    .|+++|+.+        + ...+. .+..   ...++.|+|++.. |+....
T Consensus       175 ~~~~~~~S~PDG-~~lAy~~~~~G~~~~~l~v~dl~~--------g~~~l~~-~~~~---~~~~~~WspDg~~-l~y~~~  240 (751)
T 2xe4_A          175 DVMEVKPAPPEH-DLVAFSVDMSGNEVYTIEFKRISD--------PSQTIAD-KVSG---TNGEIVWGPDHTS-LFYVTK  240 (751)
T ss_dssp             EEEEEEECTTTT-CEEEEEEESSSSSCEEEEEEETTC--------TTCCCCC-CEEE---ECSCCEECSSTTE-EEEEEE
T ss_pred             EEeeeEecCCCC-CEEEEEEeCCCCceEEEEEEECCC--------CCEeCCc-cccC---ceeeEEEecCCCE-EEEEEE
Confidence            57788999 999 556543 3333    599999987        2 21111 1111   1346889999984 444444


Q ss_pred             C-----CcEEEEeCCCCCCCCcccceEeee-cCCccEEEEEeecCCCcEEEEEec--CCcEEEEEccCCCCCCC-eeEe-
Q 020480          200 D-----AQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGD--DQYLLIWDLRTPSVSKP-VQSV-  269 (325)
Q Consensus       200 d-----g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~-  269 (325)
                      +     ..|.++++.++..    .....+. ........+.|+|++..++++...  ...|.++|+.++.. .. +..+ 
T Consensus       241 d~~~~~~~v~~~~lgt~~~----~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~-~~~~~~l~  315 (751)
T 2xe4_A          241 DETLRENKVWRHVMGKLQS----EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA-HNTLEIVR  315 (751)
T ss_dssp             CTTCCEEEEEEEETTSCGG----GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT-CCCEEESS
T ss_pred             CCCCCCCEEEEEECCCCch----hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC-CceeEEee
Confidence            3     2577788766431    1122222 222345678999998655544433  34577888876531 01 0222 


Q ss_pred             eccCCCeeEEEeCCCCC
Q 020480          270 VAHQSEVGVSILNASFR  286 (325)
Q Consensus       270 ~~h~~~v~~i~~~p~~~  286 (325)
                      ........++.|+..+.
T Consensus       316 ~~~~~~~~s~~~~~g~~  332 (751)
T 2xe4_A          316 PREKGVRYDVQMHGTSH  332 (751)
T ss_dssp             CCCTTCCEEEEEETTTE
T ss_pred             cCCCCceEEEeeeeCCE
Confidence            23344555565544443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.30  E-value=0.2  Score=42.20  Aligned_cols=138  Identities=10%  Similarity=-0.034  Sum_probs=78.7

Q ss_pred             CeeEEEecC-CCCcEEEEEec-----------------CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecC
Q 020480          127 EVNRARYMP-QNPFLIATKTV-----------------SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK  188 (325)
Q Consensus       127 ~v~~v~~~~-~~~~~la~g~~-----------------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p  188 (325)
                      ..+.+++.+ +| +++++-..                 +|.|..++...        +.   ...+.........++|+|
T Consensus       127 ~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~--------~~---~~~~~~~~~~p~gia~~~  194 (322)
T 2fp8_A          127 WLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST--------KE---TTLLLKELHVPGGAEVSA  194 (322)
T ss_dssp             CEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT--------TE---EEEEEEEESCCCEEEECT
T ss_pred             ccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCCC--------CE---EEEeccCCccCcceEECC
Confidence            467788888 77 55555322                 36788888654        11   111211112346799999


Q ss_pred             CCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec----------CCcEEEEEcc
Q 020480          189 FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD----------DQYLLIWDLR  258 (325)
Q Consensus       189 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~----------dg~i~iwd~~  258 (325)
                      ++..++++-+..+.|.+|++......    ....+....+ ...+++.++| +++++...          .+.|..+|..
T Consensus       195 dg~~lyv~d~~~~~I~~~~~~~~~~~----~~~~~~~~~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~  268 (322)
T 2fp8_A          195 DSSFVLVAEFLSHQIVKYWLEGPKKG----TAEVLVKIPN-PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEF  268 (322)
T ss_dssp             TSSEEEEEEGGGTEEEEEESSSTTTT----CEEEEEECSS-EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcCC----ccceEEeCCC-CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCC
Confidence            98744555566789999998753211    1112211223 6788999987 56666544          4667777764


Q ss_pred             CCCCCCCeeEeecc----CCCeeEEEeCCCCCc
Q 020480          259 TPSVSKPVQSVVAH----QSEVGVSILNASFRL  287 (325)
Q Consensus       259 ~~~~~~~~~~~~~h----~~~v~~i~~~p~~~~  287 (325)
                       ++   .+..+...    -..+.++++ .++.+
T Consensus       269 -G~---~~~~~~~~~g~~~~~~~~~~~-~~g~L  296 (322)
T 2fp8_A          269 -GN---ILEVIPLPPPFAGEHFEQIQE-HDGLL  296 (322)
T ss_dssp             -SC---EEEEEECCTTTTTSCCCEEEE-ETTEE
T ss_pred             -CC---EEEEEECCCCCccccceEEEE-eCCEE
Confidence             33   24444322    134566666 34554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.29  E-value=0.21  Score=42.28  Aligned_cols=158  Identities=8%  Similarity=-0.015  Sum_probs=92.6

Q ss_pred             CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec----CC--CceEEEEe---cCCCCCeEE
Q 020480          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG----HS--TEGYGLSW---SKFKEGHLL  195 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~----h~--~~v~~l~~---~p~~~~~l~  195 (325)
                      ...-.+++|.+.+..++++.-..|.|..|+...        +....+ .+.+    ..  ..+..|.|   .|.+. +++
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~--------~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~v   81 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKT--------QSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKR-LFA   81 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTT--------CCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCE-EEE
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCC--------CeEEEE-ecCCccccCCCcceeeEEEEeccCCCCc-EEE
Confidence            334457789886645666655799999999864        111111 1221    11  13579999   68765 666


Q ss_pred             EEe-------------CCCcEEEEeCC---CCCCCCcccceEeeec-----------CCccEEEEEeecCCCcEEEEEec
Q 020480          196 SGS-------------DDAQICLWDIN---AAPKNKSLEAMQIFKV-----------HEGVVEDVAWHLRHEYLFGSVGD  248 (325)
Q Consensus       196 s~s-------------~dg~i~iwd~~---~~~~~~~~~~~~~~~~-----------~~~~v~~v~~~p~~~~~l~s~~~  248 (325)
                      +..             .+..+..+|+.   +++..+.    ..+..           -....+.++..++| +..++++.
T Consensus        82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~----~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~  156 (334)
T 2p9w_A           82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWS----VNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFAL  156 (334)
T ss_dssp             EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEE----EESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEE
T ss_pred             EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEE----ecCccccccccccccccccCCceeEECCCC-CEEEeCCC
Confidence            443             26789999998   5543211    11111           11358899999987 68888887


Q ss_pred             C-CcEEEEEccCCCCCCCeeEee------ccCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          249 D-QYLLIWDLRTPSVSKPVQSVV------AHQSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       249 d-g~i~iwd~~~~~~~~~~~~~~------~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      . +.|...+.....    +..+.      ......+.|+++|+|.+  .....+.+.-.++.
T Consensus       157 ~~~~I~rV~pdG~~----~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          157 GMPAIARVSADGKT----VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             SSCEEEEECTTSCC----EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             CCCeEEEEeCCCCE----EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            7 776666655432    22221      11223679999999974  22124444444443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.19  E-value=0.59  Score=41.04  Aligned_cols=126  Identities=11%  Similarity=0.106  Sum_probs=79.9

Q ss_pred             cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC----CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCc-----
Q 020480          146 VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH----STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKS-----  216 (325)
Q Consensus       146 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~-----  216 (325)
                      .++.||.-++..        .  ...+.+..-    -..+..+..+|.|. +|+.. .+..|.|-.+-.+.....     
T Consensus        39 ~~n~iR~~~i~~--------~--~~Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           39 QDNIIRWYNVLT--------D--SLYHSLNFSRHLVLDDTFHVISSTSGD-LLCLF-NDNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTEEEEEETTT--------C--SSCEEEECTTTCCCCTTCEEEECTTSS-EEEEE-CSSEEEEEECCTTCSCCCCHHHH
T ss_pred             ECCEEEEEECCC--------C--CcceEEecCcccccCceeEEEECCCCC-EEEEe-cCCeEEEEEecCccccCcccccc
Confidence            457899888874        1  123333321    23578899999998 56655 467899998874322110     


Q ss_pred             -ccceEeeec------CCccEEEEEeecCCC--cEEEEEecCCcEEEEEccCCCCCCCeeEee---------ccCCCeeE
Q 020480          217 -LEAMQIFKV------HEGVVEDVAWHLRHE--YLFGSVGDDQYLLIWDLRTPSVSKPVQSVV---------AHQSEVGV  278 (325)
Q Consensus       217 -~~~~~~~~~------~~~~v~~v~~~p~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~  278 (325)
                       ....+.+.-      ....|..+.|||.+.  ..|++-..|+.||+||+.... ..|. .+.         .....|.+
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~-~~P~-~L~k~~~~fg~d~~~~ev~S  184 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQ-EKPI-VLNKPNNSFGLDARVNDITD  184 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTT-SCCE-EESCCCSEEESCSSCCCEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCC-CCCc-chhccccccCCCcccceEEE
Confidence             001122222      246799999999654  388899999999999999733 2244 332         12256788


Q ss_pred             EEeCCCC
Q 020480          279 SILNASF  285 (325)
Q Consensus       279 i~~~p~~  285 (325)
                      ++|.+++
T Consensus       185 ~~Fg~~~  191 (452)
T 3pbp_A          185 LEFSKDG  191 (452)
T ss_dssp             EEECTTS
T ss_pred             EEEcCCC
Confidence            8998854

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.18  E-value=0.064  Score=50.69  Aligned_cols=54  Identities=20%  Similarity=0.163  Sum_probs=35.0

Q ss_pred             CcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--ccCCCCceEEeeecce--eeecc
Q 020480          250 QYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--LSHEDTCTCTHRHSRY--LLYKF  307 (325)
Q Consensus       250 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~~~~~d~~~~~~~~~~--~~~~~  307 (325)
                      |.|..||+.+++.   +..+. +..++....+...+.  +.++.|+.++.++.+.  .+|.+
T Consensus       457 g~l~A~D~~tG~~---~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~  514 (677)
T 1kb0_A          457 GRLLAWDPVAQKA---AWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA  514 (677)
T ss_dssp             EEEEEEETTTTEE---EEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cEEEEEeCCCCcE---EeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeee
Confidence            7899999999883   55554 444555545554443  3677889999988643  34444

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.12  E-value=0.16  Score=44.59  Aligned_cols=126  Identities=8%  Similarity=0.012  Sum_probs=76.4

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCC--CCCCcEEEec------CCCceEEEEecCCCCC--eEEE
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDG--ACSPDLRLRG------HSTEGYGLSWSKFKEG--HLLS  196 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~------h~~~v~~l~~~p~~~~--~l~s  196 (325)
                      .|..+..+|+| ++||..+ +..|.|-.++.........+  .....+.+.-      ...+|..+.|+|-+..  .|++
T Consensus        67 ~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV  144 (452)
T 3pbp_A           67 DTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV  144 (452)
T ss_dssp             TTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred             ceeEEEECCCC-CEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence            67889999999 6888865 55899999884211110000  0001122321      2578999999997643  7999


Q ss_pred             EeCCCcEEEEeCCCCCCCCc-cc---ceEeeecCCccEEEEEeecCCCcEEEE--EecCCcEEEE
Q 020480          197 GSDDAQICLWDINAAPKNKS-LE---AMQIFKVHEGVVEDVAWHLRHEYLFGS--VGDDQYLLIW  255 (325)
Q Consensus       197 ~s~dg~i~iwd~~~~~~~~~-~~---~~~~~~~~~~~v~~v~~~p~~~~~l~s--~~~dg~i~iw  255 (325)
                      -..|+.|++||+........ +.   ....+......|.+++|..++- .|..  .+..|.|+-.
T Consensus       145 LtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~l-TLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          145 LKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGL-TLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSS-CEEEEECTTSCEEEEE
T ss_pred             EecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCc-EEEEEecCCCCCEEEE
Confidence            99999999999987432111 00   0001112235688899988653 3434  3366777654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.09  E-value=0.83  Score=42.63  Aligned_cols=141  Identities=6%  Similarity=-0.013  Sum_probs=88.4

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~i  205 (325)
                      ..+..++|.+.+..++.+-..++.|+.+++..        .  .....+.........+++.+.+..++++-...+.|.+
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g--------~--~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v  106 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNG--------S--ALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEV  106 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------C--SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCC--------C--CcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEE
Confidence            46778999997767777777788999998875        1  1122222222345678877666646676667789999


Q ss_pred             EeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEE-ecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCC
Q 020480          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV-GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNAS  284 (325)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~  284 (325)
                      .++.....      .......-.....++++|....++.+- +..+.|...++....    ...+...-...+.|++++.
T Consensus       107 ~~~dG~~~------~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~----~~~l~~~~~~P~GlalD~~  176 (628)
T 4a0p_A          107 SKLDGQHR------QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE----RTTLVPNVGRANGLTIDYA  176 (628)
T ss_dssp             EETTSTTC------EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS----CEEEECSCSSEEEEEEETT
T ss_pred             EecCCCcE------EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc----eEEEECCCCCcceEEEccc
Confidence            99875421      111223334578999999654555554 235677777776554    2333233456788999885


Q ss_pred             CC
Q 020480          285 FR  286 (325)
Q Consensus       285 ~~  286 (325)
                      +.
T Consensus       177 ~~  178 (628)
T 4a0p_A          177 KR  178 (628)
T ss_dssp             TT
T ss_pred             cC
Confidence            43

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.03  E-value=0.036  Score=48.14  Aligned_cols=89  Identities=8%  Similarity=-0.080  Sum_probs=61.3

Q ss_pred             EEecCCCCCeEEEEe---C-----CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe-cCCcEEE
Q 020480          184 LSWSKFKEGHLLSGS---D-----DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DDQYLLI  254 (325)
Q Consensus       184 l~~~p~~~~~l~s~s---~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~-~dg~i~i  254 (325)
                      +.++|++..++++..   .     ++.+.++|+.+.+      .+..+... .....++|+|++..++++.. .++.|.+
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~------vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsV  341 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ------TSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDI  341 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC------EEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe------EEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEE
Confidence            678999884444433   2     2356699998874      34443322 25889999999876888888 6999999


Q ss_pred             EEccCCCCCCCeeEeeccCCCeeEEEeCC
Q 020480          255 WDLRTPSVSKPVQSVVAHQSEVGVSILNA  283 (325)
Q Consensus       255 wd~~~~~~~~~~~~~~~h~~~v~~i~~~p  283 (325)
                      +|+.+.+.   +.++... .....+++.+
T Consensus       342 ID~~t~kv---v~~I~vg-~~P~~i~~~~  366 (368)
T 1mda_H          342 YDAASDQD---QSSVELD-KGPESLSVQN  366 (368)
T ss_dssp             EESSSCEE---EEECCCC-SCCCEEECCC
T ss_pred             EECCCCcE---EEEEECC-CCCCEEEeec
Confidence            99999884   6666533 3445666654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.02  E-value=0.49  Score=38.59  Aligned_cols=151  Identities=11%  Similarity=0.135  Sum_probs=87.6

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe------cCCCceEEEEecCCCCCeEEEEeC
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR------GHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      .....|++.+++ .++++.-.++.+.++++....       ....+....      ........|+|+|.+. .|+++..
T Consensus        70 ~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~~~~-------~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~-~L~va~E  140 (255)
T 3qqz_A           70 KDLETIEYIGDN-QFVISDERDYAIYVISLTPNS-------EVKILKKIKIPLQESPTNCGFEGLAYSRQDH-TFWFFKE  140 (255)
T ss_dssp             SSEEEEEECSTT-EEEEEETTTTEEEEEEECTTC-------CEEEEEEEECCCSSCCCSSCCEEEEEETTTT-EEEEEEE
T ss_pred             CChHHeEEeCCC-EEEEEECCCCcEEEEEcCCCC-------eeeeeeeeccccccccccCCcceEEEeCCCC-EEEEEEC
Confidence            567788888877 555555567789999876521       000111111      2334568999999987 4555554


Q ss_pred             CCcEEEEeCCCCCCCCcccceEe--e--ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee-cc--
Q 020480          200 DAQICLWDINAAPKNKSLEAMQI--F--KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV-AH--  272 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~--~--~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~h--  272 (325)
                      .....+|.++.......+.....  +  ..+...+.+++++|...++++.......|..+|....-.  ....+. +.  
T Consensus       141 ~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~--~~~~L~~g~~~  218 (255)
T 3qqz_A          141 KNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVI--GEMSLTKGSRG  218 (255)
T ss_dssp             SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE--EEEECSTTGGG
T ss_pred             cCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEE--EEEEcCCccCC
Confidence            44455555542111111111100  0  112345789999998777888888889999999764421  122222 11  


Q ss_pred             ----CCCeeEEEeCCCCCc
Q 020480          273 ----QSEVGVSILNASFRL  287 (325)
Q Consensus       273 ----~~~v~~i~~~p~~~~  287 (325)
                          -...-.|+|.++|.+
T Consensus       219 l~~~~~qpEGia~d~~G~l  237 (255)
T 3qqz_A          219 LSHNIKQAEGVAMDASGNI  237 (255)
T ss_dssp             CSSCCCSEEEEEECTTCCE
T ss_pred             cccccCCCCeeEECCCCCE
Confidence                125578999999986

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.97  E-value=0.33  Score=43.73  Aligned_cols=146  Identities=11%  Similarity=0.059  Sum_probs=85.0

Q ss_pred             eeEEEecCC-CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC----CCceEEEEe-------cCCCCCeEE
Q 020480          128 VNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH----STEGYGLSW-------SKFKEGHLL  195 (325)
Q Consensus       128 v~~v~~~~~-~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~-------~p~~~~~l~  195 (325)
                      ...|+|.|. +.+++++-...+.|++.|+..           ..+..+..-    ......++|       ++++. .|+
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~-----------~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~-~ly  208 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKN-----------RMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAE-YMI  208 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTT-----------TEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTC-EEE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCC-----------CEEEEEEccCccccCCCcEEEEeecccccCCCCC-EEE
Confidence            457899984 435666655557788888876           223333221    235789999       99988 455


Q ss_pred             EEeCCC-c------EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEcc-------CCC
Q 020480          196 SGSDDA-Q------ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR-------TPS  261 (325)
Q Consensus       196 s~s~dg-~------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~-------~~~  261 (325)
                      .+...+ .      |.+.+...............+.. -.....++.+|++..++++-...+.|..+|+.       ++.
T Consensus       209 vad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~  287 (496)
T 3kya_A          209 VAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGG  287 (496)
T ss_dssp             EEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTC
T ss_pred             EEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCce
Confidence            554443 2      66666333111100000011111 12345678899666788888889999999998       554


Q ss_pred             CCCC--------eeEe--eccCCCeeEEEeCCCCC
Q 020480          262 VSKP--------VQSV--VAHQSEVGVSILNASFR  286 (325)
Q Consensus       262 ~~~~--------~~~~--~~h~~~v~~i~~~p~~~  286 (325)
                      ...+        ...+  .+.......|+|+|+|.
T Consensus       288 ~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~  322 (496)
T 3kya_A          288 SWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGK  322 (496)
T ss_dssp             CCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSS
T ss_pred             eecccccccccccceeEecCCCCCceEEEEcCCCC
Confidence            2111        1121  11234467899999998

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=95.82  E-value=0.25  Score=42.55  Aligned_cols=107  Identities=13%  Similarity=0.010  Sum_probs=64.2

Q ss_pred             cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC---------CCce-EEEEecCCCCCeEEEEeCCCcEEEEeC
Q 020480          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH---------STEG-YGLSWSKFKEGHLLSGSDDAQICLWDI  208 (325)
Q Consensus       139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h---------~~~v-~~l~~~p~~~~~l~s~s~dg~i~iwd~  208 (325)
                      ..+.+++.++.|..+|..+        +  +.+......         ...+ .....  .+. .++.++.++.|..+|.
T Consensus        54 ~~v~~~~~~g~v~a~d~~t--------G--~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~v~v~~~~g~l~a~d~  120 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADD--------G--KEIWSVSLAEKDGWFSKEPALLSGGVTV--SGG-HVYIGSEKAQVYALNT  120 (376)
T ss_dssp             TEEEEECTTSEEEEEETTT--------C--CEEEEEECCC---CCSCCCCCEEEEEEE--ETT-EEEEEETTSEEEEEET
T ss_pred             CEEEEEcCCCeEEEEEccC--------C--ceeeeecCccccccccccCcccccCceE--eCC-EEEEEcCCCEEEEEEC
Confidence            3667777888999999876        2  223333321         1122 22222  233 6888899999999999


Q ss_pred             CCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee
Q 020480          209 NAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV  270 (325)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  270 (325)
                      .+++.      +................  + ..++.++.++.|..+|.++++.   +....
T Consensus       121 ~tG~~------~W~~~~~~~~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~---~W~~~  170 (376)
T 3q7m_A          121 SDGTV------AWQTKVAGEALSRPVVS--D-GLVLIHTSNGQLQALNEADGAV---KWTVN  170 (376)
T ss_dssp             TTCCE------EEEEECSSCCCSCCEEE--T-TEEEEECTTSEEEEEETTTCCE---EEEEE
T ss_pred             CCCCE------EEEEeCCCceEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcE---EEEEe
Confidence            98743      33333222111111222  2 3677888999999999998873   55443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=95.78  E-value=0.75  Score=38.81  Aligned_cols=138  Identities=9%  Similarity=-0.053  Sum_probs=85.2

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ecCCCceEEEEecCCCCCeEEEEe-CCCcE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RGHSTEGYGLSWSKFKEGHLLSGS-DDAQI  203 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i  203 (325)
                      .....+++.+.+.+++.+-...+.|.++++..           .....+ .........+++.|.+..++.+-. ..+.|
T Consensus        79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG-----------~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I  147 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDG-----------SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI  147 (318)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTS-----------CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEE
T ss_pred             CCccEEEEEcCCCeEEEEECCCCEEEEEECCC-----------CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEE
Confidence            34567888876556777766778999999875           112222 233456789999987663444432 35788


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-eccCCCeeEEEeC
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSEVGVSILN  282 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~i~~~  282 (325)
                      ...++.....      .......-...+.++++|++..++.+=+..+.|..+|+....    ...+ .........+++.
T Consensus       148 ~r~~~dG~~~------~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~----~~~~~~~~~~~P~glav~  217 (318)
T 3sov_A          148 ERAGMDGSSR------FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN----RQAVVKGSLPHPFALTLF  217 (318)
T ss_dssp             EEEETTSCSC------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEECSCCSCEEEEEEE
T ss_pred             EEEEcCCCCe------EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc----eEEEecCCCCCceEEEEe
Confidence            8888764321      111122234568899999776777777788899999987543    2222 2223345566665


Q ss_pred             CC
Q 020480          283 AS  284 (325)
Q Consensus       283 p~  284 (325)
                      .+
T Consensus       218 ~~  219 (318)
T 3sov_A          218 ED  219 (318)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.75  E-value=0.68  Score=39.15  Aligned_cols=153  Identities=12%  Similarity=0.047  Sum_probs=83.2

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEE-EeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYV-FDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~v-wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      .....+..+.+.+++ .+++++. .|.+.. .|-..        ....++  -......+..+.+.+++.  ++.++.+|
T Consensus       160 ~~~~~~~~~~~~~~~-~~~~~g~-~G~~~~S~d~gG--------~tW~~~--~~~~~~~~~~~~~~~~g~--~~~~~~~G  225 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSG-EYVAVSS-RGSFYSTWEPGQ--------TAWEPH--NRTTSRRLHNMGFTPDGR--LWMIVNGG  225 (327)
T ss_dssp             SCCCCEEEEEECTTS-CEEEEET-TSSEEEEECTTC--------SSCEEE--ECCSSSCEEEEEECTTSC--EEEEETTT
T ss_pred             CCCcceEEEEEcCCC-cEEEEEC-CCcEEEEeCCCC--------CceeEC--CCCCCCccceeEECCCCC--EEEEeCCc
Confidence            345678889999877 5666654 454443 33211        112221  123456788999988876  44556678


Q ss_pred             cEEEEeCCCCCCCCcccceEee-ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee---ccCCCee
Q 020480          202 QICLWDINAAPKNKSLEAMQIF-KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV---AHQSEVG  277 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~h~~~v~  277 (325)
                      .+++.+...+.. +  ..+..- ..+...+.++.+.+.+ .++++ +.+|.| ++....++.   -..+.   .....+.
T Consensus       226 ~~~~s~~D~G~t-W--~~~~~~~~~~~~~~~~v~~~~~~-~~~~~-g~~g~i-~~S~DgG~t---W~~~~~~~~~~~~~~  296 (327)
T 2xbg_A          226 KIAFSDPDNSEN-W--GELLSPLRRNSVGFLDLAYRTPN-EVWLA-GGAGAL-LCSQDGGQT---WQQDVDVKKVPSNFY  296 (327)
T ss_dssp             EEEEEETTEEEE-E--CCCBCTTSSCCSCEEEEEESSSS-CEEEE-ESTTCE-EEESSTTSS---CEECGGGTTSSSCCC
T ss_pred             eEEEecCCCCCe-e--EeccCCcccCCcceEEEEecCCC-EEEEE-eCCCeE-EEeCCCCcc---cEEcCccCCCCCCeE
Confidence            887774221210 0  001000 0122358889898765 45554 446766 344444543   22222   2345688


Q ss_pred             EEEeCCCCCc-cCCCCceEEee
Q 020480          278 VSILNASFRL-SHEDTCTCTHR  298 (325)
Q Consensus       278 ~i~~~p~~~~-~~~~d~~~~~~  298 (325)
                      ++.|.+++.+ .++.++.+.-.
T Consensus       297 ~v~~~~~~~~~~~G~~G~i~~~  318 (327)
T 2xbg_A          297 KILFFSPDQGFILGQKGILLRY  318 (327)
T ss_dssp             EEEEEETTEEEEECSTTEEEEE
T ss_pred             EEEEECCCceEEEcCCceEEEE
Confidence            8999766654 66677755543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=95.72  E-value=1  Score=43.21  Aligned_cols=141  Identities=12%  Similarity=0.020  Sum_probs=91.1

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-------CCCceEEEEecCCCCCeEEEEe
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-------HSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      ..|.++...++|.  |-.|+.++-|..|+....           ....+..       ....|.++...+++.  |-.|+
T Consensus       310 ~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~-----------~~~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt  374 (795)
T 4a2l_A          310 RSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRN-----------RFKNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGT  374 (795)
T ss_dssp             SCEEEEEECTTSC--EEEEESSSCEEEECGGGG-----------SSEEECCCTTSSSCSCSSEEEEEECTTSC--EEEEE
T ss_pred             CcEEEEEEeCCcC--EEEEECCCCeEEeCCCcc-----------cceEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEE
Confidence            4688888888773  455667677888876541           1111111       234689999888776  55677


Q ss_pred             CCCcEEEEeCCCCCCCCcccceEeee---------cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe
Q 020480          199 DDAQICLWDINAAPKNKSLEAMQIFK---------VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV  269 (325)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~---------~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  269 (325)
                      .++-|..||..++.       ...+.         -....|.+++..+++ .+|..|+.++-|..||..+++    +..+
T Consensus       375 ~~~Gl~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~----~~~~  442 (795)
T 4a2l_A          375 NDGGLNLYNPITQR-------FTSYTLQEDESARGIGSNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQ----VENF  442 (795)
T ss_dssp             SSSCEEEECTTTCC-------EEEECCC------CCSCSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCC----EEEE
T ss_pred             CCCCeEEEcCCCCc-------EEEEecCCCCcccCCCCccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCc----EEEe
Confidence            77789999987642       11111         123568899888776 535567777789999988765    3333


Q ss_pred             e-----ccCCCeeEEEeCCCCCc-cCCCCc
Q 020480          270 V-----AHQSEVGVSILNASFRL-SHEDTC  293 (325)
Q Consensus       270 ~-----~h~~~v~~i~~~p~~~~-~~~~d~  293 (325)
                      .     .....|.++...++|.+ .+...+
T Consensus       443 ~~~~~~l~~~~v~~i~~d~~g~lwigt~~G  472 (795)
T 4a2l_A          443 NQRNSQLVNENVYAILPDGEGNLWLGTLSA  472 (795)
T ss_dssp             CTTTSCCSCSCEEEEEECSSSCEEEEESSC
T ss_pred             ecCCCCcCCCeeEEEEECCCCCEEEEecCc
Confidence            2     12457899999988886 443333

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=95.70  E-value=0.23  Score=42.75  Aligned_cols=132  Identities=7%  Similarity=-0.005  Sum_probs=76.6

Q ss_pred             cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCccc
Q 020480          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE  218 (325)
Q Consensus       139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  218 (325)
                      ..+.+++.++.+..+|..+        +  +.+....  ......+...  +. .++.++.++.+..+|..+++.     
T Consensus       240 ~~v~~~~~~g~l~~~d~~t--------G--~~~w~~~--~~~~~~~~~~--~~-~l~~~~~~g~l~~~d~~tG~~-----  299 (376)
T 3q7m_A          240 GVVFALAYNGNLTALDLRS--------G--QIMWKRE--LGSVNDFIVD--GN-RIYLVDQNDRVMALTIDGGVT-----  299 (376)
T ss_dssp             TEEEEECTTSCEEEEETTT--------C--CEEEEEC--CCCEEEEEEE--TT-EEEEEETTCCEEEEETTTCCE-----
T ss_pred             CEEEEEecCcEEEEEECCC--------C--cEEeecc--CCCCCCceEE--CC-EEEEEcCCCeEEEEECCCCcE-----
Confidence            3566777889999999876        2  2233332  2233444443  34 688888899999999988743     


Q ss_pred             ceEeeec-CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeE-EEeCCCCCc-cCCCCceE
Q 020480          219 AMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGV-SILNASFRL-SHEDTCTC  295 (325)
Q Consensus       219 ~~~~~~~-~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-i~~~p~~~~-~~~~d~~~  295 (325)
                       +..... ....+......  + ..++.++.+|.|+++|.++++.   +.........+.+ .... ++.+ .++.++.+
T Consensus       300 -~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g~l~~~d~~tG~~---~~~~~~~~~~~~~~~~~~-~~~l~v~~~~G~l  371 (376)
T 3q7m_A          300 -LWTQSDLLHRLLTSPVLY--N-GNLVVGDSEGYLHWINVEDGRF---VAQQKVDSSGFQTEPVAA-DGKLLIQAKDGTV  371 (376)
T ss_dssp             -EEEECTTTTSCCCCCEEE--T-TEEEEECTTSEEEEEETTTCCE---EEEEECCTTCBCSCCEEE-TTEEEEEBTTSCE
T ss_pred             -EEeecccCCCcccCCEEE--C-CEEEEEeCCCeEEEEECCCCcE---EEEEecCCCcceeCCEEE-CCEEEEEeCCCEE
Confidence             333321 11122222222  3 4677888999999999999873   5555432333322 2222 3443 55556665


Q ss_pred             Eee
Q 020480          296 THR  298 (325)
Q Consensus       296 ~~~  298 (325)
                      ..+
T Consensus       372 ~~~  374 (376)
T 3q7m_A          372 YSI  374 (376)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=95.47  E-value=1.2  Score=38.95  Aligned_cols=120  Identities=10%  Similarity=-0.034  Sum_probs=78.0

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC-CCcEE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-DAQIC  204 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-dg~i~  204 (325)
                      .....+++.+.+.+++++-...+.|.+.++..          ......+.........|++.|.+..++.+-.. .+.|.
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g----------~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~  228 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG----------VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIK  228 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTT----------CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEE
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCC----------CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEE
Confidence            45667888875546777767778899888875          11112222334457899999976634444323 37888


Q ss_pred             EEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (325)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~  261 (325)
                      ..++.....      .......-...+.|+++|.+..++++-...+.|..+|+....
T Consensus       229 ~~~~dG~~~------~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~  279 (400)
T 3p5b_L          229 KGGLNGVDI------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  279 (400)
T ss_dssp             EEETTSCSC------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred             EEeCCCCcc------EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence            888875421      111222234678899998776677776778899999987654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.38  E-value=0.055  Score=51.30  Aligned_cols=145  Identities=8%  Similarity=-0.015  Sum_probs=79.2

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~i  205 (325)
                      ..+..++|.+.+..++++-...+.|+.+++......      ......+.........|++.+.+..++++-...+.|.+
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~------~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v  479 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV  479 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-------CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEE
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCC------cceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEE
Confidence            456678888866455555556678888887641000      01111111111234567887655546666667789999


Q ss_pred             EeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC-CcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCC
Q 020480          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-QYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNAS  284 (325)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~  284 (325)
                      +++.....      ...+.........++++|.+..++++-... +.|..+++.....   ...+...-...+.|+|+|+
T Consensus       480 ~d~dg~~~------~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~---~~l~~~~l~~PnGlavd~~  550 (699)
T 1n7d_A          480 ADTKGVKR------KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLVTENIQWPNGITLDLL  550 (699)
T ss_dssp             EBSSSCCE------EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC---CEESCSSCSSCCCEEECTT
T ss_pred             EecCCCce------EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe---eEEEeCCCCCccEEEEecc
Confidence            99875421      111222223457788998665555554333 6787777754331   1111112234567888875


Q ss_pred             C
Q 020480          285 F  285 (325)
Q Consensus       285 ~  285 (325)
                      +
T Consensus       551 ~  551 (699)
T 1n7d_A          551 S  551 (699)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=95.13  E-value=2.1  Score=41.07  Aligned_cols=140  Identities=9%  Similarity=-0.006  Sum_probs=88.6

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe---------cCCCceEEEEecCCCCCeEEE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR---------GHSTEGYGLSWSKFKEGHLLS  196 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~---------~h~~~v~~l~~~p~~~~~l~s  196 (325)
                      ..|.++...++| + |-.|+.++-|..|+...        +.   ...+.         -....|.++...+++. +|..
T Consensus       357 ~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~~~--------~~---~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-~lWi  422 (795)
T 4a2l_A          357 NVVSCIVEDKDK-N-LWIGTNDGGLNLYNPIT--------QR---FTSYTLQEDESARGIGSNNIKAVYVDEKKS-LVYI  422 (795)
T ss_dssp             SSEEEEEECTTS-C-EEEEESSSCEEEECTTT--------CC---EEEECCC------CCSCSCEEEEEEETTTT-EEEE
T ss_pred             CeeEEEEECCCC-C-EEEEECCCCeEEEcCCC--------Cc---EEEEecCCCCcccCCCCccEEEEEEcCCCC-EEEE
Confidence            458888888777 3 44567776788888765        11   11221         1135688998887765 4777


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceEeee-----cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeec
Q 020480          197 GSDDAQICLWDINAAPKNKSLEAMQIFK-----VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA  271 (325)
Q Consensus       197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  271 (325)
                      |+.++-|.+||.+++.       ...+.     .....|.++...+++ .+. .|+. +.|.+||..+..    ...+..
T Consensus       423 gt~~~Gl~~~d~~~~~-------~~~~~~~~~~l~~~~v~~i~~d~~g-~lw-igt~-~Gl~~~~~~~~~----~~~~~~  488 (795)
T 4a2l_A          423 GTHAGGLSILHRNSGQ-------VENFNQRNSQLVNENVYAILPDGEG-NLW-LGTL-SALVRFNPEQRS----FTTIEK  488 (795)
T ss_dssp             EETTTEEEEEETTTCC-------EEEECTTTSCCSCSCEEEEEECSSS-CEE-EEES-SCEEEEETTTTE----EEECCB
T ss_pred             EeCcCceeEEeCCCCc-------EEEeecCCCCcCCCeeEEEEECCCC-CEE-EEec-CceeEEeCCCCe----EEEccc
Confidence            8887889999987652       12221     134578899888776 444 4444 458889987654    222211


Q ss_pred             -------cCCCeeEEEeCCCCCc-cCCCCc
Q 020480          272 -------HQSEVGVSILNASFRL-SHEDTC  293 (325)
Q Consensus       272 -------h~~~v~~i~~~p~~~~-~~~~d~  293 (325)
                             ....|.++...++|.+ .+...+
T Consensus       489 ~~~~~~~~~~~i~~i~~d~~g~lWigt~~G  518 (795)
T 4a2l_A          489 EKDGTPVVSKQITTLFRDSHKRLWIGGEEG  518 (795)
T ss_dssp             CTTCCBCCCCCEEEEEECTTCCEEEEESSC
T ss_pred             cccccccCCceEEEEEECCCCCEEEEeCCc
Confidence                   2357899999999986 343333

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.10  E-value=0.8  Score=40.53  Aligned_cols=150  Identities=7%  Similarity=-0.021  Sum_probs=84.1

Q ss_pred             CeeEEEecCC--CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC---C
Q 020480          127 EVNRARYMPQ--NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD---A  201 (325)
Q Consensus       127 ~v~~v~~~~~--~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d---g  201 (325)
                      ....++|.|+  +..++++ ...+.|+.++...           ..+..+.........+++++++. ++++....   .
T Consensus       140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~-----------g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~  206 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVN-----------QYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTN  206 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTT-----------TEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTS
T ss_pred             CCceEEEccccCCCEEEEE-eCCCCEEEEECCC-----------CEEEEeecCCCCccEEEECCCCC-EEEEcCCCCccc
Confidence            3567889984  3244444 3337899998865           12333444445688999999998 66665422   1


Q ss_pred             c-EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc--CCCeeE
Q 020480          202 Q-ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH--QSEVGV  278 (325)
Q Consensus       202 ~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h--~~~v~~  278 (325)
                      . +...+......     ....+. .-.....++++|.+..++++-..++.|+.+|..++..   ...+...  ...-..
T Consensus       207 ~gv~~~~~~~~~~-----~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~---~~~~~~~~~~~~~~~  277 (433)
T 4hw6_A          207 TGIYLFTRASGFT-----ERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL---TEEEVMMDTKGSNFH  277 (433)
T ss_dssp             EEEEEECGGGTTC-----CEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE---EEEEEECSCCSSCEE
T ss_pred             ceEEEEECCCCee-----cccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE---EEEEeccCCCCCccc
Confidence            2 33333222110     001111 2234567888994446776766788899999876552   1222111  122346


Q ss_pred             EEeCCCCC-c--cCCCCceEEee
Q 020480          279 SILNASFR-L--SHEDTCTCTHR  298 (325)
Q Consensus       279 i~~~p~~~-~--~~~~d~~~~~~  298 (325)
                      |+|+|+|. +  +......+...
T Consensus       278 ia~dpdG~~LYvad~~~~~I~~~  300 (433)
T 4hw6_A          278 IVWHPTGDWAYIIYNGKHCIYRV  300 (433)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEeCCCCEEEEEeCCCCEEEEE
Confidence            99999987 4  33333444443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.10  E-value=2.5  Score=40.56  Aligned_cols=119  Identities=11%  Similarity=-0.024  Sum_probs=79.2

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ecCCCceEEEEecCCCCCeEEEEeCC-CcE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RGHSTEGYGLSWSKFKEGHLLSGSDD-AQI  203 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~d-g~i  203 (325)
                      .....|++.+.+.+++++-...+.|.+.++..           .....+ ........+|++.|.+..++++-... +.|
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG-----------~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I  539 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-----------VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI  539 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTS-----------SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCCC-----------CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeE
Confidence            45667888877767777777788999999875           112233 23345678999999866344444333 678


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~  261 (325)
                      .+.++....      ....+...-.....|++++.+..++++=...+.|..+++....
T Consensus       540 ~~~~~dG~~------~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          540 KKGGLNGVD------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             EEEETTSCC------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             EEEecCCCc------eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence            888887532      1112222335688899998776666666677889999987654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=95.00  E-value=1  Score=39.77  Aligned_cols=121  Identities=12%  Similarity=0.148  Sum_probs=72.0

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCC----eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSA----EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg----~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      .......++|++++..++++...++    .+.+++...         .......+.. ......++++|+...++++-..
T Consensus       177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g---------~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~  246 (430)
T 3tc9_A          177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES---------GFKVITELTK-GQNCNGAETHPINGELYFNSWN  246 (430)
T ss_dssp             CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG---------TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETT
T ss_pred             CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC---------ceeeeeeecc-CCCceEEEEeCCCCEEEEEECC
Confidence            3345678899998843555543222    344444332         1221223322 2345788999943336777667


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~  259 (325)
                      ++.|..++......    ..+... ........++|+|++..++++-...+.|..++...
T Consensus       247 ~~~V~~~~~~~~~~----~~~~~~-~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          247 AGQVFRYDFTTQET----TPLFTI-QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             TTEEEEEETTTTEE----EEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCEEEEEECCCCcE----EEEEEc-CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            88999999875421    011111 11234678999999854777777888999988764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.87  E-value=1  Score=42.22  Aligned_cols=117  Identities=15%  Similarity=0.091  Sum_probs=72.1

Q ss_pred             eEEEecC-CCCcEEEEEecCC-----------eEEEEeCCCCCCCCCCCCCCCCcEEEec-CCCceEEEEecCCCCCeEE
Q 020480          129 NRARYMP-QNPFLIATKTVSA-----------EVYVFDYSKHPSKPPLDGACSPDLRLRG-HSTEGYGLSWSKFKEGHLL  195 (325)
Q Consensus       129 ~~v~~~~-~~~~~la~g~~dg-----------~v~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~  195 (325)
                      ..+++.+ ++ ++++.|+.+.           .+.+||...        +.+..+..+.. +.....++++.+++. +++
T Consensus       189 ~~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t--------~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv  258 (656)
T 1k3i_A          189 AAAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPST--------GIVSDRTVTVTKHDMFCPGISMDGNGQ-IVV  258 (656)
T ss_dssp             SEEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTT--------CCBCCCEEEECSCCCSSCEEEECTTSC-EEE
T ss_pred             eeEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCCC--------CcEEeCcccCCCCCCccccccCCCCCC-EEE
Confidence            3567777 55 7888887543           688999887        55555555533 333445677778887 888


Q ss_pred             EEeC-CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe-cC-----CcEEEEEccCCC
Q 020480          196 SGSD-DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DD-----QYLLIWDLRTPS  261 (325)
Q Consensus       196 s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~-~d-----g~i~iwd~~~~~  261 (325)
                      .|+. +..+.+||..+..-    ..+..+...... .+++..+++ .+++.|+ .+     ..+.+||..+..
T Consensus       259 ~GG~~~~~v~~yd~~t~~W----~~~~~~~~~R~~-~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          259 TGGNDAKKTSLYDSSSDSW----IPGPDMQVARGY-QSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             ECSSSTTCEEEEEGGGTEE----EECCCCSSCCSS-CEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eCCCCCCceEEecCcCCce----eECCCCCccccc-cceEEecCC-eEEEEeCcccCCcccccceEeCCCCCc
Confidence            8874 46899999886521    111111111111 233445566 5888888 44     568999987654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=94.81  E-value=0.08  Score=50.20  Aligned_cols=117  Identities=10%  Similarity=-0.048  Sum_probs=72.2

Q ss_pred             eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeCC-CcEEE
Q 020480          128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDD-AQICL  205 (325)
Q Consensus       128 v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~d-g~i~i  205 (325)
                      ...|++.+.+.+++++-...+.|.++++..           .....+. ........|++.|.+..++++-... +.|.+
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg-----------~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~  523 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKG-----------VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKK  523 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSS-----------CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEB
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCC-----------CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEE
Confidence            345677755545666655677888888765           1122222 1223457889998766455554333 67888


Q ss_pred             EeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (325)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~  261 (325)
                      +++.....      .......-...+.|+|+|++..++++-+..+.|..+|+....
T Consensus       524 ~~~dG~~~------~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~  573 (699)
T 1n7d_A          524 GGLNGVDI------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  573 (699)
T ss_dssp             CCSSSCCC------CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC
T ss_pred             EeCCCCCe------eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc
Confidence            77764321      111111223456799999877788887888899999987543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=94.79  E-value=0.11  Score=49.12  Aligned_cols=83  Identities=12%  Similarity=0.126  Sum_probs=51.4

Q ss_pred             CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCC
Q 020480          148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE  227 (325)
Q Consensus       148 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  227 (325)
                      |.|..||+.+          .+.+..+..+. ++..-.+...+. +++.|+.||.++.||.++++      .+..+....
T Consensus       455 g~l~A~D~~t----------G~~~W~~~~~~-~~~~g~~~tagg-lvf~gt~dg~l~a~D~~tG~------~lw~~~~~~  516 (689)
T 1yiq_A          455 GKLIAWDPVK----------QQAAWEVPYVT-IFNGGTLSTAGN-LVFEGSADGRVIAYAADTGE------KLWEQPAAS  516 (689)
T ss_dssp             EEEEEEETTT----------TEEEEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTTCC------EEEEEECSS
T ss_pred             eeEEEEECCC----------CCeEeEccCCC-CccCccceECCC-EEEEECCCCcEEEEECCCCc------cceeeeCCC
Confidence            6688888776          23344444332 222223444455 89999999999999999984      455555332


Q ss_pred             c-cEEEEEeecCCCcEEEEEec
Q 020480          228 G-VVEDVAWHLRHEYLFGSVGD  248 (325)
Q Consensus       228 ~-~v~~v~~~p~~~~~l~s~~~  248 (325)
                      . ...-+.|..+|..++++.+.
T Consensus       517 ~~~~~p~ty~~~G~qyv~~~~G  538 (689)
T 1yiq_A          517 GVMAAPVTYSVDGEQYVTFMAG  538 (689)
T ss_dssp             CCCSCCEEEEETTEEEEEEEEC
T ss_pred             CcccCceEEEECCEEEEEEEec
Confidence            2 22446677788767665543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=94.62  E-value=0.41  Score=40.58  Aligned_cols=115  Identities=7%  Similarity=-0.005  Sum_probs=73.0

Q ss_pred             eeEEEe---cCCCCcEEEEEe-------------cCCeEEEEeCC---CCCCCCCCCCCCCCcEEEe--cC---------
Q 020480          128 VNRARY---MPQNPFLIATKT-------------VSAEVYVFDYS---KHPSKPPLDGACSPDLRLR--GH---------  177 (325)
Q Consensus       128 v~~v~~---~~~~~~~la~g~-------------~dg~v~vwd~~---~~~~~~~~~~~~~~~~~~~--~h---------  177 (325)
                      +..|.|   .|++ .++++..             .+..|..||+.   +          .+.+....  ..         
T Consensus        65 ~sGl~~~~~D~~g-rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~t----------g~~~~~~dL~~~~~~~~~~~g  133 (334)
T 2p9w_A           65 MSGLSLLTHDNSK-RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSEN----------SKPVWSVNFEKVQDEFEKKAG  133 (334)
T ss_dssp             EEEEEESSSSSCC-EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTT----------CCCSEEEESHHHHHHHHHHHS
T ss_pred             eeEEEEeccCCCC-cEEEEEcccccccccccccCCCCEEEEEcCCcCCC----------CCEEEEecCcccccccccccc
Confidence            468888   5775 6766543             25789999988   4          23333222  11         


Q ss_pred             --CCceEEEEecCCCCCeEEEEeCC-CcEEEEeCCCCCCCCcccce-Eee--ecCCccEEEEEeecCCCcEEEEEecCCc
Q 020480          178 --STEGYGLSWSKFKEGHLLSGSDD-AQICLWDINAAPKNKSLEAM-QIF--KVHEGVVEDVAWHLRHEYLFGSVGDDQY  251 (325)
Q Consensus       178 --~~~v~~l~~~p~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~-~~~--~~~~~~v~~v~~~p~~~~~l~s~~~dg~  251 (325)
                        .....+++..++|+ ..++++.. +.|...+......    ... ...  .......+.++++|++. +|++....|.
T Consensus       134 ~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pdG~~~----~~~~~~~~~~~~~~G~nGIv~~pdg~-~Liv~~~~g~  207 (334)
T 2p9w_A          134 KRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSADGKTV----STFAWESGNGGQRPGYSGITFDPHSN-KLIAFGGPRA  207 (334)
T ss_dssp             SCCEEEEEEEECTTSC-EEEEEEESSCEEEEECTTSCCE----EEEEECCCCSSSCCSCSEEEEETTTT-EEEEESSSSS
T ss_pred             ccccCCceeEECCCCC-EEEeCCCCCCeEEEEeCCCCEE----eeeeecCCCcccccCcceEEEeCCCC-EEEEEcCCCe
Confidence              12478999999998 78888888 8877777664311    100 001  11223467899999985 5555544999


Q ss_pred             EEEEEccC
Q 020480          252 LLIWDLRT  259 (325)
Q Consensus       252 i~iwd~~~  259 (325)
                      |..+|++.
T Consensus       208 L~~fD~~~  215 (334)
T 2p9w_A          208 LTAFDVSK  215 (334)
T ss_dssp             EEEEECSS
T ss_pred             EEEEcCCC
Confidence            99999884

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=94.46  E-value=1.8  Score=35.95  Aligned_cols=150  Identities=15%  Similarity=0.070  Sum_probs=78.2

Q ss_pred             cCCCeeEEEecCCCCcEEEEEec-CC-eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          124 HDGEVNRARYMPQNPFLIATKTV-SA-EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~-dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      ..+....+++.+++ +++++... ++ .|..++...        +....+..+ ........++..+.+. .+++-..++
T Consensus        70 ~~~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~--------g~~~~~~~~-~~~~~~~g~~~~~~~~-~~v~d~~~g  138 (306)
T 2p4o_A           70 VEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSD--------GTVETLLTL-PDAIFLNGITPLSDTQ-YLTADSYRG  138 (306)
T ss_dssp             CSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTT--------SCEEEEEEC-TTCSCEEEEEESSSSE-EEEEETTTT
T ss_pred             CCCCceeEEEcCCC-cEEEEeccCCcceEEEEcCCC--------CeEEEEEeC-CCccccCcccccCCCc-EEEEECCCC
Confidence            34568899999998 46555433 22 466667554        222111111 1122234455444443 455555688


Q ss_pred             cEEEEeCCCCCC-CCcc-cceE--eeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480          202 QICLWDINAAPK-NKSL-EAMQ--IFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG  277 (325)
Q Consensus       202 ~i~iwd~~~~~~-~~~~-~~~~--~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  277 (325)
                      .|.++|...+.. .... ....  .....-...+.+  +|++..++++-...+.|..||+...........+. ......
T Consensus       139 ~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~  215 (306)
T 2p4o_A          139 AIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNID  215 (306)
T ss_dssp             EEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCS
T ss_pred             eEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCC
Confidence            999998764310 0000 0000  000111234455  77776677777788999999987521111122221 123456


Q ss_pred             EEEeCCCCCc
Q 020480          278 VSILNASFRL  287 (325)
Q Consensus       278 ~i~~~p~~~~  287 (325)
                      .++++++|.+
T Consensus       216 gi~vd~dG~l  225 (306)
T 2p4o_A          216 DFAFDVEGNL  225 (306)
T ss_dssp             SEEEBTTCCE
T ss_pred             CeEECCCCCE
Confidence            7888988875

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=94.38  E-value=1.9  Score=35.84  Aligned_cols=126  Identities=8%  Similarity=0.068  Sum_probs=76.1

Q ss_pred             CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCe
Q 020480          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (325)
Q Consensus       114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  193 (325)
                      ...+.+..+........++|.+++ +++++-..++.|..|+...           .....+ ........+++.+++. +
T Consensus        20 ~~~~~~~~~p~~~~pegia~~~~g-~lyv~d~~~~~I~~~d~~g-----------~~~~~~-~~~~~p~gia~~~dG~-l   85 (306)
T 2p4o_A           20 APAKIITSFPVNTFLENLASAPDG-TIFVTNHEVGEIVSITPDG-----------NQQIHA-TVEGKVSGLAFTSNGD-L   85 (306)
T ss_dssp             CCEEEEEEECTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTC-----------CEEEEE-ECSSEEEEEEECTTSC-E
T ss_pred             CCceEeEeCCCCCCcceEEECCCC-CEEEEeCCCCeEEEECCCC-----------ceEEEE-eCCCCceeEEEcCCCc-E
Confidence            345566666655678899999987 5777766789999998764           112222 2235688999999988 6


Q ss_pred             EEEEeCCC--cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480          194 LLSGSDDA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (325)
Q Consensus       194 l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~  259 (325)
                      +++.....  .|..+|...+..    ..+... ........++..+. ...+++-...+.|.++|...
T Consensus        86 ~vad~~~~~~~v~~~d~~~g~~----~~~~~~-~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~  147 (306)
T 2p4o_A           86 VATGWNADSIPVVSLVKSDGTV----ETLLTL-PDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQ  147 (306)
T ss_dssp             EEEEECTTSCEEEEEECTTSCE----EEEEEC-TTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTT
T ss_pred             EEEeccCCcceEEEEcCCCCeE----EEEEeC-CCccccCcccccCC-CcEEEEECCCCeEEEEeCCC
Confidence            66554332  466677655421    111111 11122344444443 34555555688888888764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.10  E-value=3.7  Score=38.14  Aligned_cols=145  Identities=8%  Similarity=-0.006  Sum_probs=86.0

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      ..-+....++|.+.+..++.+=...+.|..+++..        . ......+.........+++.+.+..++++-...+.
T Consensus        37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g--------~-~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~  107 (619)
T 3s94_A           37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK--------T-ESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNR  107 (619)
T ss_dssp             BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccC--------C-CceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCE
Confidence            34455678999987656666655677888888875        1 11122233323567889998866646677677899


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe-cCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEe
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL  281 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~  281 (325)
                      |.+.++.....      .......-.....|+++|.+..++.+-- ..+.|...++.....   .......-...+.|++
T Consensus       108 I~v~~~dG~~~------~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~---~~l~~~~~~~P~Glal  178 (619)
T 3s94_A          108 IEVSNLDGSLR------KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR---FIIINSEIYWPNGLTL  178 (619)
T ss_dssp             EEEEETTSCSC------EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EEEECSSCSSEEEEEE
T ss_pred             EEEEECCCCCE------EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce---EEEEeCCCCCCcEEEE
Confidence            99999986421      1112233345678999997655555542 245666666654431   2222223345678888


Q ss_pred             CCCC
Q 020480          282 NASF  285 (325)
Q Consensus       282 ~p~~  285 (325)
                      ++.+
T Consensus       179 d~~~  182 (619)
T 3s94_A          179 DYEE  182 (619)
T ss_dssp             ETTT
T ss_pred             EccC
Confidence            8753

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=93.81  E-value=2.6  Score=35.45  Aligned_cols=148  Identities=7%  Similarity=-0.018  Sum_probs=74.3

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEE-
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC-  204 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~-  204 (325)
                      +.+..+.+.+++ .+++++ .+|.|.  .....      .....  ....++...+..+.+.+++. +++.+. .|.+. 
T Consensus       122 ~~~~~i~~~~~~-~~~~~~-~~g~v~--~S~Dg------G~tW~--~~~~~~~~~~~~~~~~~~~~-~~~~g~-~G~~~~  187 (327)
T 2xbg_A          122 GSPRLIKALGNG-SAEMIT-NVGAIY--RTKDS------GKNWQ--ALVQEAIGVMRNLNRSPSGE-YVAVSS-RGSFYS  187 (327)
T ss_dssp             SCEEEEEEEETT-EEEEEE-TTCCEE--EESST------TSSEE--EEECSCCCCEEEEEECTTSC-EEEEET-TSSEEE
T ss_pred             CCeEEEEEECCC-CEEEEe-CCccEE--EEcCC------CCCCE--EeecCCCcceEEEEEcCCCc-EEEEEC-CCcEEE
Confidence            456677776655 556554 455443  22210      01121  11234556788999999876 565554 45443 


Q ss_pred             EEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-eccCCCeeEEEeCC
Q 020480          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSEVGVSILNA  283 (325)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~i~~~p  283 (325)
                      -+|-. + ..+  ..+  -......+..+.+.+++ .++ .++.+|.+++.+...+..+..+..- ..+...+.++++.+
T Consensus       188 S~d~g-G-~tW--~~~--~~~~~~~~~~~~~~~~g-~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~  259 (327)
T 2xbg_A          188 TWEPG-Q-TAW--EPH--NRTTSRRLHNMGFTPDG-RLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT  259 (327)
T ss_dssp             EECTT-C-SSC--EEE--ECCSSSCEEEEEECTTS-CEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS
T ss_pred             EeCCC-C-Cce--eEC--CCCCCCccceeEECCCC-CEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC
Confidence            33421 1 111  111  12344578889998876 444 5566788777642212211111110 01223578888988


Q ss_pred             CCCc-cCCCCceE
Q 020480          284 SFRL-SHEDTCTC  295 (325)
Q Consensus       284 ~~~~-~~~~d~~~  295 (325)
                      ++.+ .++.++.+
T Consensus       260 ~~~~~~~g~~g~i  272 (327)
T 2xbg_A          260 PNEVWLAGGAGAL  272 (327)
T ss_dssp             SSCEEEEESTTCE
T ss_pred             CCEEEEEeCCCeE
Confidence            7764 33334434

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=93.57  E-value=4.7  Score=37.49  Aligned_cols=139  Identities=8%  Similarity=-0.020  Sum_probs=80.6

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEE
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW  206 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iw  206 (325)
                      .+.+++|.+.+..++.+-...+.|+.++...        .  .....+.........+++.+.+.+++++-+..+.|.+.
T Consensus       350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g--------~--~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~  419 (619)
T 3s94_A          350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDG--------S--GSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVT  419 (619)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEETTS--------C--SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCC--------C--ccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEE
Confidence            4567788876545666655577888887764        1  11112222224556788876555467776778899999


Q ss_pred             eCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec-CCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCC
Q 020480          207 DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-DQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNAS  284 (325)
Q Consensus       207 d~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~  284 (325)
                      ++.....      .......-....+++++|....++.+-.. .+.|...++.....   .......-...+.|++++.
T Consensus       420 ~~~G~~~------~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~---~~l~~~~l~~P~GlalD~~  489 (619)
T 3s94_A          420 RLNGTMR------KILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR---VVLVNTSLGWPNGLALDYD  489 (619)
T ss_dssp             ETTSCSC------EEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EEEECSSCSCEEEEEEETT
T ss_pred             eCCCCeE------EEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc---EEEEeCCCCCCeeeEEccc
Confidence            9875421      11122233567899999974455555422 35666666654331   2222223346678888874

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=93.53  E-value=1.4  Score=40.64  Aligned_cols=76  Identities=11%  Similarity=-0.064  Sum_probs=46.0

Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCe-eE
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV-GV  278 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v-~~  278 (325)
                      +|.|.-||+.+++.      +....... .+..-.....+ .+++.|+.||.++.||.++++.   +..+....... .-
T Consensus       465 ~G~l~A~D~~tG~~------~W~~~~~~-~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~~---lW~~~~~~g~~a~P  533 (582)
T 1flg_A          465 VGSLRAMDPVSGKV------VWEHKEHL-PLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKE---LWKFQTGSGIVSPP  533 (582)
T ss_dssp             SEEEEEECTTTCCE------EEEEEESS-CCCSCCEEETT-TEEEEECTTSEEEEEETTTCCE---EEEEECSSCCCSCC
T ss_pred             cceEEEEECCCCCE------EEEecCCC-CCcccceEeCC-CEEEEECCCCcEEEEECCCCCE---EEEecCCCCcccCc
Confidence            57889999988743      33322211 12111112234 4677799999999999999984   77665432211 23


Q ss_pred             EEeCCCCC
Q 020480          279 SILNASFR  286 (325)
Q Consensus       279 i~~~p~~~  286 (325)
                      +.|..+|+
T Consensus       534 ~~y~~~G~  541 (582)
T 1flg_A          534 ITWEQDGE  541 (582)
T ss_dssp             EEEEETTE
T ss_pred             eEEEECCE
Confidence            66767777

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.31  E-value=2.3  Score=37.82  Aligned_cols=115  Identities=9%  Similarity=0.120  Sum_probs=60.2

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec------CCCceEEEEecCC---CCCe
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG------HSTEGYGLSWSKF---KEGH  193 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~p~---~~~~  193 (325)
                      ..-.....|+|.|+| +++++-...+.|++++...        +....+..+..      .......|+|+|+   +..+
T Consensus        24 ~~l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~--------g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~l   94 (454)
T 1cru_A           24 SNLNKPHALLWGPDN-QIWLTERATGKILRVNPES--------GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI   94 (454)
T ss_dssp             CCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTT--------CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred             CCCCCceEEEEcCCC-cEEEEEcCCCEEEEEECCC--------CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEE
Confidence            334566799999998 5666644335788887543        21221222211      2456789999995   4424


Q ss_pred             EEEEeC------------CCcEEEEeCCCCCCC-Cccc-ceEeee-cCCccEEEEEeecCCCcEEEEEe
Q 020480          194 LLSGSD------------DAQICLWDINAAPKN-KSLE-AMQIFK-VHEGVVEDVAWHLRHEYLFGSVG  247 (325)
Q Consensus       194 l~s~s~------------dg~i~iwd~~~~~~~-~~~~-~~~~~~-~~~~~v~~v~~~p~~~~~l~s~~  247 (325)
                      .++-+.            ...|.-|+....... .... .+..+. ........++|.|++. ++++.+
T Consensus        95 Yv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G  162 (454)
T 1cru_A           95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG  162 (454)
T ss_dssp             EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred             EEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence            444432            235666665432110 0001 111111 1123468899999984 555544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=93.28  E-value=0.94  Score=42.60  Aligned_cols=61  Identities=7%  Similarity=-0.076  Sum_probs=40.2

Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeec
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA  271 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  271 (325)
                      +|.|..||+.+++.      +...... .......+...+ .+++.++.||.++.||.++++.   +..+..
T Consensus       437 ~g~l~A~D~~tG~~------~W~~~~~-~~~~~~~~~t~g-g~vf~g~~dg~l~a~d~~tG~~---l~~~~~  497 (668)
T 1kv9_A          437 SGALLAWDPVKQKA------AWKVPYP-THWNGGTLSTAG-NLVFQGTAAGQMHAYSADKGEA---LWQFEA  497 (668)
T ss_dssp             EEEEEEEETTTTEE------EEEEEES-SSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCE---EEEEEC
T ss_pred             cceEEEEeCCCCcE------EEEccCC-CCCcCceeEeCC-CEEEEECCcccchhhhhhcChh---heEecC
Confidence            47899999988743      3333322 222223344445 5777889999999999999884   666543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=93.01  E-value=0.8  Score=42.19  Aligned_cols=76  Identities=11%  Similarity=-0.124  Sum_probs=44.2

Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC-CeeE
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS-EVGV  278 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~  278 (325)
                      +|.|..||+.+++.      +..+... ..+........+ .+++.++.||.|+.+|.++++.   +..+..... .-..
T Consensus       443 ~g~l~a~D~~tG~~------~W~~~~~-~~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~tG~~---lw~~~~~~~~~~~p  511 (571)
T 2ad6_A          443 MGQIRAFDLTTGKA------KWTKWEK-FAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGKE---LWNFKMPSGGIGSP  511 (571)
T ss_dssp             CEEEEEECTTTCCE------EEEEEES-SCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCE---EEEEECSSCCCSCC
T ss_pred             CCeEEEEECCCCCE------EEEecCC-CCccceeEEECC-CEEEEEcCCCeEEEEECCCCCE---EEEEeCCCCcEeee
Confidence            57889999887743      3333221 122222223334 3566789999999999999984   666643221 1122


Q ss_pred             EEeCCCCC
Q 020480          279 SILNASFR  286 (325)
Q Consensus       279 i~~~p~~~  286 (325)
                      +.+..+|+
T Consensus       512 ~~~~~~G~  519 (571)
T 2ad6_A          512 MTYSFKGK  519 (571)
T ss_dssp             EEEEETTE
T ss_pred             EEEEECCE
Confidence            34556665

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.79  E-value=1.7  Score=37.21  Aligned_cols=109  Identities=9%  Similarity=-0.007  Sum_probs=59.9

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe---cCCCceEEEEecCC---CCCeEEEEeC
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR---GHSTEGYGLSWSKF---KEGHLLSGSD  199 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~---~~~~l~s~s~  199 (325)
                      ..-..++|.|+| .++++ ...|.|++++ ..         ....+..+.   ........|+++|+   +..++++-..
T Consensus        31 ~~P~~ia~~pdG-~l~V~-e~~g~I~~i~-~g---------~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~   98 (352)
T 2ism_A           31 EVPWALAFLPDG-GMLIA-ERPGRIRLFR-EG---------RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTV   98 (352)
T ss_dssp             SCEEEEEECTTS-CEEEE-ETTTEEEEEE-TT---------EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             CCceEEEEcCCC-eEEEE-eCCCeEEEEE-CC---------CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEec
Confidence            455789999998 45555 5679999998 32         111111111   12356789999998   4424444443


Q ss_pred             C-----CcEEEEeCCCCCCCCcccceEeee---cCCccEEEEEeecCCCcEEEEEe
Q 020480          200 D-----AQICLWDINAAPKNKSLEAMQIFK---VHEGVVEDVAWHLRHEYLFGSVG  247 (325)
Q Consensus       200 d-----g~i~iwd~~~~~~~~~~~~~~~~~---~~~~~v~~v~~~p~~~~~l~s~~  247 (325)
                      .     +.|..++............+..+.   ........++|.|++ .++++.+
T Consensus        99 ~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G  153 (352)
T 2ism_A           99 AEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTG  153 (352)
T ss_dssp             CTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECC
T ss_pred             CCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEEC
Confidence            2     678888876421000000111122   111123679999998 5665543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=92.75  E-value=7  Score=37.26  Aligned_cols=146  Identities=8%  Similarity=0.005  Sum_probs=85.3

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe---cCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR---GHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      ..|.++...+++ . |-.|+. +-|..|+...        +.........   .....|.++...+++.  |..|+..+-
T Consensus       450 ~~v~~i~~d~~g-~-lwigt~-~Gl~~~~~~~--------~~~~~~~~~~~~~~~~~~i~~i~~d~~g~--lWigt~~~G  516 (781)
T 3v9f_A          450 LDVRVFYEDKNK-K-IWIGTH-AGVFVIDLAS--------KKVIHHYDTSNSQLLENFVRSIAQDSEGR--FWIGTFGGG  516 (781)
T ss_dssp             CCEEEEEECTTS-E-EEEEET-TEEEEEESSS--------SSCCEEECTTTSSCSCSCEEEEEECTTCC--EEEEESSSC
T ss_pred             CeEEEEEECCCC-C-EEEEEC-CceEEEeCCC--------CeEEecccCcccccccceeEEEEEcCCCC--EEEEEcCCC
Confidence            567888777766 3 444455 4588888765        1111110000   0135788999888876  444555444


Q ss_pred             EEEEeCCCCCCCCcccceEeeec----CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeecc----CC
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKV----HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH----QS  274 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~----~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h----~~  274 (325)
                      +..||.....       ...+..    ....|.++...+++ .+. .|+..|.+..||..+.+    +..+...    ..
T Consensus       517 l~~~~~~~~~-------~~~~~~~~~l~~~~i~~i~~d~~g-~lW-i~T~~Glv~~~d~~~~~----~~~~~~~~gl~~~  583 (781)
T 3v9f_A          517 VGIYTPDMQL-------VRKFNQYEGFCSNTINQIYRSSKG-QMW-LATGEGLVCFPSARNFD----YQVFQRKEGLPNT  583 (781)
T ss_dssp             EEEECTTCCE-------EEEECTTTTCSCSCEEEEEECTTS-CEE-EEETTEEEEESCTTTCC----CEEECGGGTCSCC
T ss_pred             EEEEeCCCCe-------EEEccCCCCCCCCeeEEEEECCCC-CEE-EEECCCceEEECCCCCc----EEEccccCCCCCc
Confidence            7778876541       222221    23468888888876 444 44556655888887665    3333221    23


Q ss_pred             CeeEEEeCCCCCc-cCCCCceEEe
Q 020480          275 EVGVSILNASFRL-SHEDTCTCTH  297 (325)
Q Consensus       275 ~v~~i~~~p~~~~-~~~~d~~~~~  297 (325)
                      .|.++...++|.+ .++..+..++
T Consensus       584 ~i~~i~~d~~g~lW~~t~~Gl~~~  607 (781)
T 3v9f_A          584 HIRAISEDKNGNIWASTNTGISCY  607 (781)
T ss_dssp             CCCEEEECSSSCEEEECSSCEEEE
T ss_pred             eEEEEEECCCCCEEEEcCCceEEE
Confidence            5788999988886 4445554444

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.74  E-value=1.2  Score=35.42  Aligned_cols=148  Identities=7%  Similarity=-0.035  Sum_probs=75.0

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC--CceEEEEecCCCCCeEEEEeCCCcE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS--TEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      ..+..++|+|++ .+.++  .+|.++-.+..+...     ....-..+..+..  ....++.|.|++. +.++  .||.|
T Consensus        41 ~~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~-----~~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~i  109 (236)
T 1tl2_A           41 SNFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDN-----DNWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV--SKDKL  109 (236)
T ss_dssp             TTCSEEEECTTS-CEEEE--ETTEEEEESCCCSTT-----CCHHHHCEEEECSCGGGCSEEEECTTSC-EEEE--ETTEE
T ss_pred             ccceeEEECCCc-cEEEE--eCCeEEEECCCCCCc-----ccccccccEecccccccceEEEECCCCC-EEEe--CCCEE
Confidence            367799999977 57776  778766666533100     0000011111111  1146889999987 5555  56999


Q ss_pred             EEEeCCCCCCCCcccceEeeec-CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCC---CeeEee-ccCCCeeE
Q 020480          204 CLWDINAAPKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK---PVQSVV-AHQSEVGV  278 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~-~h~~~v~~  278 (325)
                      .-++--+......+..-..+.. -=..+..|.+.|+| .+.+..  |+.++-....+.....   ....+. ..-.....
T Consensus       110 yr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~  186 (236)
T 1tl2_A          110 YKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNG-YLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKF  186 (236)
T ss_dssp             EEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTS-CEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEE
T ss_pred             EEeCCCcCCCCceeccccEeccCCCCceEEEEECCCc-eEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEE
Confidence            8887533222111111111111 11467899999998 566555  7775432222111100   001111 12223455


Q ss_pred             EEeCCCCCc
Q 020480          279 SILNASFRL  287 (325)
Q Consensus       279 i~~~p~~~~  287 (325)
                      +.|.++|.+
T Consensus       187 l~f~~~G~l  195 (236)
T 1tl2_A          187 LFFSSVGTL  195 (236)
T ss_dssp             EEECTTSCE
T ss_pred             EEECCCCcE
Confidence            779999886

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=92.63  E-value=4.4  Score=34.68  Aligned_cols=158  Identities=11%  Similarity=0.078  Sum_probs=85.4

Q ss_pred             CCeeEEEecCCCCcEEEEE------------ecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-----CCCceEEEEecC
Q 020480          126 GEVNRARYMPQNPFLIATK------------TVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-----HSTEGYGLSWSK  188 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g------------~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~p  188 (325)
                      .....+...|+| ..+.++            ..+|.|.++|..+..      .+...+ .+.+     .....+.+.+.+
T Consensus        50 ~G~EDi~~~~~G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~------~~~~~l-~~~g~~~~~~~f~PhGi~~~~  121 (355)
T 3sre_A           50 NGSEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKE------PAVSEL-EIIGNTLDISSFNPHGISTFI  121 (355)
T ss_dssp             SCCCEEEECTTS-EEEEEECCC-----------CCEEEEEETTSSS------CCEEEC-EEECSSCCGGGCCEEEEEEEE
T ss_pred             CCcceeEEcCCC-eEEEEeccccCCCcccCCCCCCeEEEEecCCCC------CceEEE-EccCCCCCcCceeeeeeEEEE
Confidence            345566777876 344443            268999999987411      111111 2333     223567787765


Q ss_pred             --CCCCeEEEEe-C--CCcEEEEeCCCCCCCCcccceEeeecC-CccEEEEEeecCCCcEEEEEec--------------
Q 020480          189 --FKEGHLLSGS-D--DAQICLWDINAAPKNKSLEAMQIFKVH-EGVVEDVAWHLRHEYLFGSVGD--------------  248 (325)
Q Consensus       189 --~~~~~l~s~s-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~l~s~~~--------------  248 (325)
                        ++...|+.+. .  +.+|.+|++.....  ....+..+.+. -...+++...++| .++++...              
T Consensus       122 d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~--~~~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~  198 (355)
T 3sre_A          122 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEK--SLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHL  198 (355)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTT--EEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHT
T ss_pred             CCCCcEEEEEEECCCCCCeEEEEEEECCCC--EEEEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhc
Confidence              3432344443 2  46788888775432  12234444432 2468899999987 56665441              


Q ss_pred             ---CCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc---cCCCCceEEeeec
Q 020480          249 ---DQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL---SHEDTCTCTHRHS  300 (325)
Q Consensus       249 ---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~  300 (325)
                         .|.|.-+|.  ++    +..+...-...+.|+|+|+++.   +.+....+..+++
T Consensus       199 ~~~~g~vyr~d~--~~----~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~  250 (355)
T 3sre_A          199 GLAWSFVTYYSP--ND----VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEK  250 (355)
T ss_dssp             TCCCEEEEEECT--TC----CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             cCCccEEEEEEC--Ce----EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEE
Confidence               234444443  33    3333333456799999999973   2223344444443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=92.56  E-value=5.6  Score=37.91  Aligned_cols=136  Identities=13%  Similarity=-0.021  Sum_probs=83.3

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE-EEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  204 (325)
                      ..|.++...+++ . |-.|+.++-|..|+...        +...... .-......|.++...+++.  |..|+.++-+.
T Consensus       363 ~~v~~i~~d~~g-~-lWigt~~~Gl~~~~~~~--------~~~~~~~~~~~~~~~~v~~i~~d~~g~--lWigt~~~Gl~  430 (781)
T 3v9f_A          363 KVVSSVCDDGQG-K-LWIGTDGGGINVFENGK--------RVAIYNKENRELLSNSVLCSLKDSEGN--LWFGTYLGNIS  430 (781)
T ss_dssp             SCEEEEEECTTS-C-EEEEEBSSCEEEEETTE--------EEEECC-----CCCSBEEEEEECTTSC--EEEEETTEEEE
T ss_pred             cceEEEEEcCCC-C-EEEEeCCCcEEEEECCC--------CeEEEccCCCCCCCcceEEEEECCCCC--EEEEeccCCEE
Confidence            458888887766 3 44556566688888754        1111110 0012345788998887776  55577767788


Q ss_pred             EEeCCCCCCCCcccceEeee---cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee-cc-----CCC
Q 020480          205 LWDINAAPKNKSLEAMQIFK---VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV-AH-----QSE  275 (325)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~---~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~h-----~~~  275 (325)
                      .+|.+++.       ...+.   .....|.++...+++ .+. .|+. +-|..||..+.+.    ..+. ..     ...
T Consensus       431 ~~~~~~~~-------~~~~~~~~~~~~~v~~i~~d~~g-~lw-igt~-~Gl~~~~~~~~~~----~~~~~~~~~~~~~~~  496 (781)
T 3v9f_A          431 YYNTRLKK-------FQIIELEKNELLDVRVFYEDKNK-KIW-IGTH-AGVFVIDLASKKV----IHHYDTSNSQLLENF  496 (781)
T ss_dssp             EECSSSCE-------EEECCSTTTCCCCEEEEEECTTS-EEE-EEET-TEEEEEESSSSSC----CEEECTTTSSCSCSC
T ss_pred             EEcCCCCc-------EEEeccCCCCCCeEEEEEECCCC-CEE-EEEC-CceEEEeCCCCeE----EecccCcccccccce
Confidence            99887542       22221   134578888888765 344 4555 5688899877652    2221 11     357


Q ss_pred             eeEEEeCCCCCc
Q 020480          276 VGVSILNASFRL  287 (325)
Q Consensus       276 v~~i~~~p~~~~  287 (325)
                      |.++...++|.+
T Consensus       497 i~~i~~d~~g~l  508 (781)
T 3v9f_A          497 VRSIAQDSEGRF  508 (781)
T ss_dssp             EEEEEECTTCCE
T ss_pred             eEEEEEcCCCCE
Confidence            899999999986

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=92.39  E-value=4.7  Score=34.42  Aligned_cols=111  Identities=9%  Similarity=-0.047  Sum_probs=60.3

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe---cCCCceEEEEecCC---CCCeEEEE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR---GHSTEGYGLSWSKF---KEGHLLSG  197 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~---~~~~l~s~  197 (325)
                      .-.....++|.|++ .++++ ..+|.|++++...         . ..+..+.   ........|+++|+   +..++++-
T Consensus        27 ~l~~P~~ia~~pdG-~l~V~-e~~g~I~~~d~~G---------~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~   94 (354)
T 3a9g_A           27 DLEVPWSIAPLGGG-RYLVT-ERPGRLVLISPSG---------K-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA   94 (354)
T ss_dssp             SCSCEEEEEEEETT-EEEEE-ETTTEEEEECSSC---------E-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred             CCCCCeEEEEcCCC-eEEEE-eCCCEEEEEeCCC---------c-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence            34566789999988 55555 6679999997332         1 1122111   12346889999997   44244443


Q ss_pred             eC---C----CcEEEEeCCCCCCC-Ccccc-eEeeec-CCccEEEEEeecCCCcEEEEEe
Q 020480          198 SD---D----AQICLWDINAAPKN-KSLEA-MQIFKV-HEGVVEDVAWHLRHEYLFGSVG  247 (325)
Q Consensus       198 s~---d----g~i~iwd~~~~~~~-~~~~~-~~~~~~-~~~~v~~v~~~p~~~~~l~s~~  247 (325)
                      +.   +    ..|..|+....... ..... +..+.. .......++|.|++ .++++.+
T Consensus        95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G  153 (354)
T 3a9g_A           95 SYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTG  153 (354)
T ss_dssp             EEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECC
T ss_pred             eccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEEC
Confidence            32   3    56777776543110 00011 111221 11124678999998 4665543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=92.26  E-value=1  Score=42.37  Aligned_cols=73  Identities=10%  Similarity=0.016  Sum_probs=44.7

Q ss_pred             EEEecCCCCcEEEEEecCC-------------------eEEEEeCCCCCCCCCCCCCCCCcEEEec--CC-------Cce
Q 020480          130 RARYMPQNPFLIATKTVSA-------------------EVYVFDYSKHPSKPPLDGACSPDLRLRG--HS-------TEG  181 (325)
Q Consensus       130 ~v~~~~~~~~~la~g~~dg-------------------~v~vwd~~~~~~~~~~~~~~~~~~~~~~--h~-------~~v  181 (325)
                      .+++.|.+ .++..++.++                   .|..+|..+        +  +.+..++.  |.       .+.
T Consensus       234 ~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~t--------G--~~~W~~~~~~~~~wd~~~~~~~  302 (668)
T 1kv9_A          234 SMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT--------G--KLAWHYQVTPGDSWDFTATQQI  302 (668)
T ss_dssp             CEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT--------C--CEEEEEESSTTCCSCCCCCSCE
T ss_pred             ceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCC--------C--ceeeEeecCCCccccccCCCCc
Confidence            46777766 5777777665                   388888876        2  33444432  22       222


Q ss_pred             EEEEecCCCC--CeEEEEeCCCcEEEEeCCCCCC
Q 020480          182 YGLSWSKFKE--GHLLSGSDDAQICLWDINAAPK  213 (325)
Q Consensus       182 ~~l~~~p~~~--~~l~s~s~dg~i~iwd~~~~~~  213 (325)
                      .......++.  ..++.++.+|.++++|..+++.
T Consensus       303 ~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             EEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence            2222222332  2588899999999999988753

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=91.38  E-value=2.6  Score=36.05  Aligned_cols=149  Identities=12%  Similarity=0.085  Sum_probs=75.5

Q ss_pred             CCeeEEEecCCCCc-EEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE----EecCCCceEEEEecCC---CCCeEEEE
Q 020480          126 GEVNRARYMPQNPF-LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR----LRGHSTEGYGLSWSKF---KEGHLLSG  197 (325)
Q Consensus       126 ~~v~~v~~~~~~~~-~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~l~~~p~---~~~~l~s~  197 (325)
                      .....|+|.|+| + ++++ ...|.|++++.....        ..++..    ..........|+++|+   +..++++-
T Consensus        18 ~~P~~i~~~pdG-~~l~V~-e~~G~i~~~~~~g~~--------~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~   87 (353)
T 2g8s_A           18 DHPWALAFLPDN-HGMLIT-LRGGELRHWQAGKGL--------SAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY   87 (353)
T ss_dssp             SSEEEEEECSTT-CCEEEE-ETTTEEEEEETTTEE--------CCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred             CCcEEEEEcCCC-CEEEEE-eCCceEEEEeCCCce--------eeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence            456789999998 5 5554 567999999854310        011111    1122345789999996   44244443


Q ss_pred             eC-------CCcEEEEeCCCCCCC-Ccccc-eEeee---cCCccEEEEEeecCCCcEEEEEecC-------------CcE
Q 020480          198 SD-------DAQICLWDINAAPKN-KSLEA-MQIFK---VHEGVVEDVAWHLRHEYLFGSVGDD-------------QYL  252 (325)
Q Consensus       198 s~-------dg~i~iwd~~~~~~~-~~~~~-~~~~~---~~~~~v~~v~~~p~~~~~l~s~~~d-------------g~i  252 (325)
                      +.       ...|..|++...... ..... +..+.   ........++|.|++ .++++.+..             |.|
T Consensus        88 ~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I  166 (353)
T 2g8s_A           88 SEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKL  166 (353)
T ss_dssp             EEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEE
T ss_pred             eCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEE
Confidence            32       235666666432110 00000 11111   011123579999998 555554432             355


Q ss_pred             EEEEccCCCC-----------CCCeeEeeccCCCeeEEEeCC-CCCc
Q 020480          253 LIWDLRTPSV-----------SKPVQSVVAHQSEVGVSILNA-SFRL  287 (325)
Q Consensus       253 ~iwd~~~~~~-----------~~~~~~~~~h~~~v~~i~~~p-~~~~  287 (325)
                      .-++....-.           ...+.. .+|. ....++|+| .|.+
T Consensus       167 ~ri~~dG~~p~~npf~~~~~~~~~i~a-~G~r-np~gl~~d~~~g~l  211 (353)
T 2g8s_A          167 VRLTDQGEIPDDNPFIKESGVRAEIWS-YGIR-NPQGMAMNPWSNAL  211 (353)
T ss_dssp             EEEETTSCCCTTCTTTTSTTSCTTEEE-ECCS-EEEEEEEETTTTEE
T ss_pred             EEECCCCCCCCCCCCcCCCCCCccEEE-EcCc-CccceEEECCCCCE
Confidence            5555543200           001221 2332 367899999 7776

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=90.37  E-value=1.4  Score=35.04  Aligned_cols=145  Identities=9%  Similarity=-0.053  Sum_probs=74.0

Q ss_pred             cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC--CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCc
Q 020480          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH--STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKS  216 (325)
Q Consensus       139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~  216 (325)
                      .+|.+..+| +|+.=..+.....    .......++ +.  -..+.+++|+|++. +.+.  .+|.+.-.+..+......
T Consensus         5 ~~l~~v~~d-~~y~G~~P~~~~~----~~~~~a~~i-G~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W   75 (236)
T 1tl2_A            5 SMLRGVYQD-KFYQGTYPQNKND----NWLARATLI-GKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNW   75 (236)
T ss_dssp             CCEEEEETT-EEEEESCCCSTTC----CHHHHSEEE-ESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCH
T ss_pred             eEEEEEeCC-cEEecCCCCCccc----chhhhcccc-CccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCcccc
Confidence            467777777 7776665541100    000011222 23  24678999999776 4444  677766666543221111


Q ss_pred             ccceEeeec-CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCe---eEe-eccCCCeeEEEeCCCCCccCCC
Q 020480          217 LEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV---QSV-VAHQSEVGVSILNASFRLSHED  291 (325)
Q Consensus       217 ~~~~~~~~~-~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~-~~h~~~v~~i~~~p~~~~~~~~  291 (325)
                      ...-..+.. --..-.++.|.|++ .+.++  .||.|+-++-.+.....=+   ..+ ..-=..+..|.|.|+|.+-+-.
T Consensus        76 ~~s~t~IG~~Gw~~F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A           76 MGRAKKIGNGGWNQFQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             HHHCEEEECSCGGGCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             cccccEecccccccceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            111111100 00113678999987 46655  6698877765443321000   111 1011467999999999973322


Q ss_pred             CceE
Q 020480          292 TCTC  295 (325)
Q Consensus       292 d~~~  295 (325)
                      ++.+
T Consensus       153 dg~l  156 (236)
T 1tl2_A          153 GQQF  156 (236)
T ss_dssp             TTEE
T ss_pred             CCcE
Confidence            5543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=90.32  E-value=9  Score=33.72  Aligned_cols=116  Identities=8%  Similarity=0.087  Sum_probs=66.6

Q ss_pred             eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC---------------CCceEEEEe------
Q 020480          128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH---------------STEGYGLSW------  186 (325)
Q Consensus       128 v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h---------------~~~v~~l~~------  186 (325)
                      -..++|+|++..++++-...+.|+.+++....      +.......+.+.               -.....+++      
T Consensus       275 ~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~------~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y  348 (433)
T 4hw6_A          275 NFHIVWHPTGDWAYIIYNGKHCIYRVDYNRET------GKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAY  348 (433)
T ss_dssp             CEEEEECTTSSEEEEEETTTTEEEEEEBCTTT------CCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGG
T ss_pred             cccEEEeCCCCEEEEEeCCCCEEEEEeCCCCC------cccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccc
Confidence            34699999985466666677899998865310      111111122221               123567888      


Q ss_pred             ---cCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecC------------------CccEEEEEeecCCCcEEEE
Q 020480          187 ---SKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH------------------EGVVEDVAWHLRHEYLFGS  245 (325)
Q Consensus       187 ---~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~------------------~~~v~~v~~~p~~~~~l~s  245 (325)
                         .+.+. ++++-...+.|+.++.. +.       +..+.+.                  -.....|+++|.+..++++
T Consensus       349 ~~dd~~g~-lyvaD~~n~~I~~~~~~-G~-------v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa  419 (433)
T 4hw6_A          349 AGEEDEYD-FYFCDRDSHTVRVLTPE-GR-------VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG  419 (433)
T ss_dssp             TTSSCCEE-EEEEETTTTEEEEECTT-SE-------EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE
T ss_pred             cccCCCCc-EEEEECCCCEEEEECCC-CC-------EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE
Confidence               66665 66666677889998853 21       1121111                  1235678888433356666


Q ss_pred             EecCCcEEEEEcc
Q 020480          246 VGDDQYLLIWDLR  258 (325)
Q Consensus       246 ~~~dg~i~iwd~~  258 (325)
                      =...+.|+.+++.
T Consensus       420 D~~n~rIr~i~~e  432 (433)
T 4hw6_A          420 DCDNHRVRKIAPE  432 (433)
T ss_dssp             EGGGTEEEEEEEC
T ss_pred             eCCCCEEEEEecC
Confidence            6666777776653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=89.05  E-value=9.9  Score=32.39  Aligned_cols=114  Identities=11%  Similarity=-0.019  Sum_probs=62.2

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE----ecCCCceEEEEecCC---CCCeEEE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL----RGHSTEGYGLSWSKF---KEGHLLS  196 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~p~---~~~~l~s  196 (325)
                      .-..-..|+|.|+| .++++-...|.|++++...        +....+..+    .........|+++|+   +..+.++
T Consensus        30 gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~--------g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~  100 (347)
T 3das_A           30 GLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKT--------GRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY  100 (347)
T ss_dssp             CCSSEEEEEECTTS-CEEEEETTTCEEEEECTTT--------CCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred             CCCCceEEEEcCCC-cEEEEEecCCEEEEEECCC--------CcEeeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence            45677899999998 5777654489999997543        211112111    123456789999995   3313332


Q ss_pred             E--eCCCcEEEEeCCCCC----CCCcccc-eEeee-cCCccEEEEEeecCCCcEEEEEe
Q 020480          197 G--SDDAQICLWDINAAP----KNKSLEA-MQIFK-VHEGVVEDVAWHLRHEYLFGSVG  247 (325)
Q Consensus       197 ~--s~dg~i~iwd~~~~~----~~~~~~~-~~~~~-~~~~~v~~v~~~p~~~~~l~s~~  247 (325)
                      =  ..++.|.-|.+....    ....... +..+. ........+.|.|++ .++++.+
T Consensus       101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~G  158 (347)
T 3das_A          101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTG  158 (347)
T ss_dssp             EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECB
T ss_pred             EecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEEC
Confidence            1  245566667665421    1000011 11121 111234569999998 4666644

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=88.66  E-value=9.3  Score=34.35  Aligned_cols=124  Identities=10%  Similarity=0.174  Sum_probs=71.7

Q ss_pred             CeeEEEe-------cCCCCcEEEEEecCC------eEEEEeCCCCCCCCCCCCCCC--C-cEEEecCCCceEEEEecCCC
Q 020480          127 EVNRARY-------MPQNPFLIATKTVSA------EVYVFDYSKHPSKPPLDGACS--P-DLRLRGHSTEGYGLSWSKFK  190 (325)
Q Consensus       127 ~v~~v~~-------~~~~~~~la~g~~dg------~v~vwd~~~~~~~~~~~~~~~--~-~~~~~~h~~~v~~l~~~p~~  190 (325)
                      ....++|       .+++..++++-..++      .|.+++....       +...  + ...+... .....++.+|++
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~-------G~~~~~~~~~~v~~~-~~p~giavdp~~  258 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNAD-------GTFDDRSDIQLIAAY-KQCNGATIHPIN  258 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTT-------SCCSTTSCEEEEEEE-SCCCCEEECTTT
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCC-------CceeecccceeeccC-CCceEEEEcCCC
Confidence            4788999       998854555544332      3666653220       1111  1 0222211 234678889966


Q ss_pred             CCeEEEEeCCCcEEEEeCC-------CCCCCC----c----ccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEE
Q 020480          191 EGHLLSGSDDAQICLWDIN-------AAPKNK----S----LEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW  255 (325)
Q Consensus       191 ~~~l~s~s~dg~i~iwd~~-------~~~~~~----~----~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iw  255 (325)
                      ..++++-..++.|..+|+.       .+....    .    ...+... +.......++|+|++..++++-+....|+.+
T Consensus       259 g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~ki  337 (496)
T 3kya_A          259 GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRS  337 (496)
T ss_dssp             CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEE
Confidence            6577777788899999997       332200    0    0011111 2234467899999985456666778889987


Q ss_pred             EccC
Q 020480          256 DLRT  259 (325)
Q Consensus       256 d~~~  259 (325)
                      +...
T Consensus       338 d~dg  341 (496)
T 3kya_A          338 DYDE  341 (496)
T ss_dssp             EEET
T ss_pred             ecCC
Confidence            6543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=88.50  E-value=4.8  Score=37.26  Aligned_cols=76  Identities=12%  Similarity=-0.204  Sum_probs=43.4

Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCC-CeeE
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS-EVGV  278 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~  278 (325)
                      .|.|.-||+.+++.      +..... ......-.....+ .++..++.||.++.||.++++.   +..++.... ...-
T Consensus       452 ~G~l~A~D~~tG~~------~W~~~~-~~~~~~g~~~tag-g~vf~gt~dg~l~A~D~~tG~~---lW~~~l~~g~~~~P  520 (599)
T 1w6s_A          452 LGQIKAYNAITGDY------KWEKME-RFAVWGGTMATAG-DLVFYGTLDGYLKARDSDTGDL---LWKFKIPSGAIGYP  520 (599)
T ss_dssp             CEEEEEECTTTCCE------EEEEEE-SSCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCE---EEEEECSSCCCSCC
T ss_pred             cCeEEEEECCCCCE------EeEecC-CCCccCcceEecC-CEEEEECCCCeEEEEECCCCCE---EEEeeCCCCcEecc
Confidence            46788888887743      222221 1111111112234 4666799999999999999984   666643221 1233


Q ss_pred             EEeCCCCC
Q 020480          279 SILNASFR  286 (325)
Q Consensus       279 i~~~p~~~  286 (325)
                      +.|..+|+
T Consensus       521 ~~y~~~G~  528 (599)
T 1w6s_A          521 MTYTHKGT  528 (599)
T ss_dssp             EEEEETTE
T ss_pred             EEEEeCCE
Confidence            55656676

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=88.48  E-value=16  Score=34.00  Aligned_cols=140  Identities=10%  Similarity=0.024  Sum_probs=82.8

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec------CCCceEEEEecCCCCCeEEEEeC
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG------HSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ..+.++.|.+.+..++.+=...+.|+.++...          ......+..      ....+.+|++...+.+++.+-+.
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g----------~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~  409 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDG----------SQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEA  409 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTS----------CSCEEEEC--------CCCEEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCC----------CCceEEEEcccccccccCCcceEEeeccCCeEEEEcCC
Confidence            44667888886645555545567788887654          111112221      23457889988877757778778


Q ss_pred             CCcEEEEeCCCCCCCCcccceEe-eecCCccEEEEEeecCCCcEEEEEecCC--cEEEEEccCCCCCCCeeEeeccCCCe
Q 020480          200 DAQICLWDINAAPKNKSLEAMQI-FKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSEV  276 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v  276 (325)
                      .+.|.+.++...       .... +........+++++|....++.+-....  .|...++.....   .......-...
T Consensus       410 ~~~I~v~~~~G~-------~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~---~~l~~~~l~~P  479 (628)
T 4a0p_A          410 TNVINVTRLDGR-------SVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER---EVLFFSGLSKP  479 (628)
T ss_dssp             TTEEEEEETTSC-------EEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC---EEEECSSCSCE
T ss_pred             CCEEEEEECCCC-------eEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc---EEEEeccCCCc
Confidence            889999998743       1222 2233456889999995445666654433  455555544331   11222223456


Q ss_pred             eEEEeCCCC
Q 020480          277 GVSILNASF  285 (325)
Q Consensus       277 ~~i~~~p~~  285 (325)
                      +.|++++.+
T Consensus       480 ~gla~D~~~  488 (628)
T 4a0p_A          480 IALALDSRL  488 (628)
T ss_dssp             EEEEEETTT
T ss_pred             cEEEEeCCC
Confidence            788888753

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=88.37  E-value=11  Score=32.13  Aligned_cols=127  Identities=10%  Similarity=0.077  Sum_probs=76.9

Q ss_pred             CCeeEEEe--cCCCC-cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          126 GEVNRARY--MPQNP-FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       126 ~~v~~v~~--~~~~~-~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      ..+..+++  +|... .++++...+|.+..|++.......   -..+.++++.- .+.+-.+...+... .|+.+-.+.-
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~---~~~~lVR~f~l-gsq~EgcvvDd~~g-~Lyv~eEd~G  202 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY---ISGKKVRAFKM-NSQTEGMAADDEYG-RLYIAEEDEA  202 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC---EEEEEEEEEEC-SSCEEEEEEETTTT-EEEEEETTTE
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc---ccceEEEEecC-CCCcceEEEcCCCC-eEEEecccce
Confidence            45666777  66443 356677888999999885311000   01233455543 35788888888776 7999999877


Q ss_pred             EEEEeCCCCCCCCcccceEeee-c-CCccEEEEEee--cCCC-cEEEEEecCCcEEEEEcc
Q 020480          203 ICLWDINAAPKNKSLEAMQIFK-V-HEGVVEDVAWH--LRHE-YLFGSVGDDQYLLIWDLR  258 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~-~-~~~~v~~v~~~--p~~~-~~l~s~~~dg~i~iwd~~  258 (325)
                      |..++.+..... ....+..+. + -...+..|++-  +++. .+|+|+-.+.+..+||..
T Consensus       203 Iw~~da~p~~~~-~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          203 IWKFSAEPDGGS-NGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEECSTTSCS-CCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEEEeCCcCCCC-CceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            777775533211 012232221 1 22367778774  4443 466666678899999997

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=87.27  E-value=4.5  Score=34.47  Aligned_cols=102  Identities=13%  Similarity=0.069  Sum_probs=59.3

Q ss_pred             CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEee---ecCCccEEEEEeecC---CCcEEEEEecC--
Q 020480          178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIF---KVHEGVVEDVAWHLR---HEYLFGSVGDD--  249 (325)
Q Consensus       178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~v~~~p~---~~~~l~s~~~d--  249 (325)
                      -.....++|.|++. ++++ ..+|.|++++  .+..    ..+..+   .........++++|+   +..++++-...  
T Consensus        30 l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~----~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~  101 (352)
T 2ism_A           30 LEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRL----STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEG  101 (352)
T ss_dssp             CSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEE----EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTT
T ss_pred             CCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCc----cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCC
Confidence            34567999999987 5554 5679999998  2211    111111   122356889999997   44566555543  


Q ss_pred             ---CcEEEEEccCCCCC--CCeeE-eec---cCCCeeEEEeCCCCCc
Q 020480          250 ---QYLLIWDLRTPSVS--KPVQS-VVA---HQSEVGVSILNASFRL  287 (325)
Q Consensus       250 ---g~i~iwd~~~~~~~--~~~~~-~~~---h~~~v~~i~~~p~~~~  287 (325)
                         +.|..|+.......  +.+.. +..   .......|+|.|+|.+
T Consensus       102 ~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~L  148 (352)
T 2ism_A          102 GLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGML  148 (352)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCE
T ss_pred             CCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCE
Confidence               56777777643200  01111 221   0112468999999986

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=87.21  E-value=18  Score=33.16  Aligned_cols=57  Identities=11%  Similarity=-0.058  Sum_probs=32.1

Q ss_pred             cCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeC-CCCCc-cCCCCceEEeeecce--eeeccC
Q 020480          248 DDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN-ASFRL-SHEDTCTCTHRHSRY--LLYKFP  308 (325)
Q Consensus       248 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~-p~~~~-~~~~d~~~~~~~~~~--~~~~~~  308 (325)
                      .+|.|..||+.+++.   +..+.. ..++.+..+. ..+.+ .++.|+.+..++.+.  ..|+++
T Consensus       442 ~~g~l~a~D~~tG~~---~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKA---KWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             CCEEEEEECTTTCCE---EEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCeEEEEECCCCCE---EEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence            357899999998873   555532 2222222222 23443 667788888877542  344443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=86.35  E-value=29  Score=34.86  Aligned_cols=123  Identities=12%  Similarity=0.125  Sum_probs=76.4

Q ss_pred             CCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE-EEecCCC-ceEEEEecCCC
Q 020480          113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-RLRGHST-EGYGLSWSKFK  190 (325)
Q Consensus       113 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~-~~~~h~~-~v~~l~~~p~~  190 (325)
                      ..+++++......++|++++-.. | .++|+  ...+|++|++..        .  +.+. ....+.. .+..+..  .+
T Consensus       873 ~~kL~lv~~~~v~g~v~al~~~~-g-~Lla~--ig~~l~vy~l~~--------~--~~L~~~~~~~~~i~~~~l~~--~~  936 (1158)
T 3ei3_A          873 DGKLQTVAEKEVKGAVYSMVEFN-G-KLLAS--INSTVRLYEWTT--------E--KELRTECNHYNNIMALYLKT--KG  936 (1158)
T ss_dssp             TTEEEEEEEEEESSCEEEEEEET-T-EEEEE--ETTEEEEEEECT--------T--SCEEEEEEECCCSCEEEEEE--ET
T ss_pred             CCEEEEEEEEEcCCcCEEEeeeC-C-EEEEE--cCCEEEEEECCC--------C--ceEEEEeeccccEEEEEEec--cC
Confidence            35788888888899999988654 4 44444  347899999975        1  1122 1111211 1224443  34


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCCCCCcccceEee--ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480          191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIF--KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (325)
Q Consensus       191 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~  259 (325)
                      + +++.|..-..|.+...+....     .+..+  ..+...++++.+--++  .++.+..+|.+.+.....
T Consensus       937 ~-~I~vgD~~~Sv~~~~y~~~~~-----~L~~~a~D~~~~~vta~~~ld~~--t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          937 D-FILVGDLMRSVLLLAYKPMEG-----NFEEIARDFNPNWMSAVEILDDD--NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             T-EEEEEESSBCEEEEEEETTTT-----EEEEEEECCSCBCEEEEEEEETT--EEEEEETTSEEEEEEECT
T ss_pred             C-EEEEEEhhheEEEEEEEcCCC-----eEEEEEeecccccEEEEEEEccC--cEEEEcCCCcEEEEecCC
Confidence            5 788998888888776554321     12222  2345678888886543  677889999999988765

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=85.94  E-value=4.9  Score=37.54  Aligned_cols=117  Identities=10%  Similarity=-0.007  Sum_probs=64.7

Q ss_pred             EEEEecC-CCCCeEEEEeCCC-----------cEEEEeCCCCCCCCcccceEeee-cCCccEEEEEeecCCCcEEEEEe-
Q 020480          182 YGLSWSK-FKEGHLLSGSDDA-----------QICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVG-  247 (325)
Q Consensus       182 ~~l~~~p-~~~~~l~s~s~dg-----------~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~s~~-  247 (325)
                      .+.++.+ ++. +++.|+.+.           .+.+||..+..-    ..+..+. .+.....++++.+++ .+++.|+ 
T Consensus       189 ~~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w----~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~  262 (656)
T 1k3i_A          189 AAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV----SDRTVTVTKHDMFCPGISMDGNG-QIVVTGGN  262 (656)
T ss_dssp             SEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCB----CCCEEEECSCCCSSCEEEECTTS-CEEEECSS
T ss_pred             eeEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcE----EeCcccCCCCCCccccccCCCCC-CEEEeCCC
Confidence            3566677 665 778776543           588999987643    1222221 122233346666776 6888888 


Q ss_pred             cCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCC-CC-----ceEEeeecceeeec
Q 020480          248 DDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHE-DT-----CTCTHRHSRYLLYK  306 (325)
Q Consensus       248 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~-~d-----~~~~~~~~~~~~~~  306 (325)
                      .+..+.+||..+..- ..+..+.. ...-.+++..++|++  .|| .+     ..+.+|+...-.|.
T Consensus       263 ~~~~v~~yd~~t~~W-~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          263 DAKKTSLYDSSSDSW-IPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             STTCEEEEEGGGTEE-EECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             CCCceEEecCcCCce-eECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence            456899999987642 11111111 112234566677775  455 23     34555665444443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=85.59  E-value=16  Score=31.17  Aligned_cols=152  Identities=13%  Similarity=0.135  Sum_probs=83.7

Q ss_pred             ceEEEEEeccC--CCeeEEEecCCCCcEEEEEe-----------------cCCeEEEEeCCCCCCCCCCCCCCCCcEEEe
Q 020480          115 KVQIIQQINHD--GEVNRARYMPQNPFLIATKT-----------------VSAEVYVFDYSKHPSKPPLDGACSPDLRLR  175 (325)
Q Consensus       115 ~~~~~~~~~h~--~~v~~v~~~~~~~~~la~g~-----------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  175 (325)
                      ....+..+.+.  ...+.+.+.++| .++++..                 ..|.|.-++...             +..+.
T Consensus       152 ~~~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~-------------~~~~~  217 (355)
T 3sre_A          152 SLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND-------------VRVVA  217 (355)
T ss_dssp             EEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC-------------CEEEE
T ss_pred             EEEEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEECCe-------------EEEee
Confidence            34555555543  457889999988 5666543                 123444444321             22222


Q ss_pred             cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeec-CCCcEEEEEecC-CcEE
Q 020480          176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL-RHEYLFGSVGDD-QYLL  253 (325)
Q Consensus       176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~s~~~d-g~i~  253 (325)
                      ..-.....++|+|++..++++-+..+.|..|++.....   +...+.+ ......-.++..+ +| ++.+++..+ +.|.
T Consensus       218 ~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~---l~~~~~~-~~~g~PDGi~vD~e~G-~lwva~~~~g~~v~  292 (355)
T 3sre_A          218 EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT---LTPLRVL-SFDTLVDNISVDPVTG-DLWVGCHPNGMRIF  292 (355)
T ss_dssp             EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC---EEEEEEE-ECSSEEEEEEECTTTC-CEEEEEESCHHHHH
T ss_pred             cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc---EecCEEE-eCCCCCceEEEeCCCC-cEEEEecCCceEEE
Confidence            22345689999999985666666789999999874321   1223333 2345667788888 46 566656533 3444


Q ss_pred             EEEccCCCCCCCeeEeec---cCCCeeEEEeCCCCCc
Q 020480          254 IWDLRTPSVSKPVQSVVA---HQSEVGVSILNASFRL  287 (325)
Q Consensus       254 iwd~~~~~~~~~~~~~~~---h~~~v~~i~~~p~~~~  287 (325)
                      .|+..... ...+..+..   -...+..+ |..+|+.
T Consensus       293 ~~~P~~~~-~s~v~rI~~~~~~~~~v~~v-~~ddG~~  327 (355)
T 3sre_A          293 FYDAENPP-GSEVLRIQDILSEEPKVTVV-YAENGTV  327 (355)
T ss_dssp             SCCTTSCC-CEEEEEEECTTSSSCEEEEE-EEECSSS
T ss_pred             EECCCCCC-CCEEEEEEccCCCCcEEEEE-EEcCCCE
Confidence            44443211 112333321   12334444 6668875

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=84.73  E-value=12  Score=31.83  Aligned_cols=106  Identities=16%  Similarity=0.106  Sum_probs=59.5

Q ss_pred             CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEe----eecCCccEEEEEeecC---CCcEEEEEe--
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI----FKVHEGVVEDVAWHLR---HEYLFGSVG--  247 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~v~~v~~~p~---~~~~l~s~~--  247 (325)
                      .-...+.|+|.|++. ++++--..|.|++++...+..    ..+..    +.........|+++|+   +..++++-+  
T Consensus        30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~----~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~  104 (347)
T 3das_A           30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRK----TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA  104 (347)
T ss_dssp             CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCE----EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred             CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcE----eeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence            345678999999997 666665589999998654321    11211    1223457889999995   334544433  


Q ss_pred             cCCcEEEEEccCCC----CC-CC--ee-Eeec-cCCCeeEEEeCCCCCc
Q 020480          248 DDQYLLIWDLRTPS----VS-KP--VQ-SVVA-HQSEVGVSILNASFRL  287 (325)
Q Consensus       248 ~dg~i~iwd~~~~~----~~-~~--~~-~~~~-h~~~v~~i~~~p~~~~  287 (325)
                      .++.|.-|.+....    .. ..  +. .+.. ..-.-..|+|.|+|.+
T Consensus       105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~L  153 (347)
T 3das_A          105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKML  153 (347)
T ss_dssp             SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCE
T ss_pred             CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCE
Confidence            34445445544311    10 01  11 1111 1113466999999986

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=83.67  E-value=14  Score=32.64  Aligned_cols=105  Identities=9%  Similarity=0.115  Sum_probs=58.1

Q ss_pred             CCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeee------cCCccEEEEEeecC---CCcEEEEEec
Q 020480          178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK------VHEGVVEDVAWHLR---HEYLFGSVGD  248 (325)
Q Consensus       178 ~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~v~~~p~---~~~~l~s~~~  248 (325)
                      -...+.|+|.|++. ++++-...+.|++++...+..    ..+..+.      ........|+|+|+   +..+.++-+.
T Consensus        26 l~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~----~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~  100 (454)
T 1cru_A           26 LNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSV----KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTF  100 (454)
T ss_dssp             CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCE----EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             CCCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcE----eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEec
Confidence            34678999999997 666544445788887654321    1122221      12456789999995   4455555543


Q ss_pred             ------------CCcEEEEEccCCCC----CCCeeE-eec-cCCCeeEEEeCCCCCc
Q 020480          249 ------------DQYLLIWDLRTPSV----SKPVQS-VVA-HQSEVGVSILNASFRL  287 (325)
Q Consensus       249 ------------dg~i~iwd~~~~~~----~~~~~~-~~~-h~~~v~~i~~~p~~~~  287 (325)
                                  ...|.-|++.....    .+.+.. +.. .......|+|.|+|.+
T Consensus       101 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~L  157 (454)
T 1cru_A          101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKI  157 (454)
T ss_dssp             ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCE
T ss_pred             cccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeE
Confidence                        12455555433210    001111 111 1124688999999986

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=81.67  E-value=7.3  Score=33.21  Aligned_cols=101  Identities=11%  Similarity=0.056  Sum_probs=57.7

Q ss_pred             CceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEee---ecCCccEEEEEeecC---CCcEEEEEec---C
Q 020480          179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIF---KVHEGVVEDVAWHLR---HEYLFGSVGD---D  249 (325)
Q Consensus       179 ~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~v~~~p~---~~~~l~s~~~---d  249 (325)
                      .....++|.|++.  |+.+..+|.|+++|. .+.     ..+..+   .........|+++|+   +..++++-+.   +
T Consensus        29 ~~P~~ia~~pdG~--l~V~e~~g~I~~~d~-~G~-----~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~  100 (354)
T 3a9g_A           29 EVPWSIAPLGGGR--YLVTERPGRLVLISP-SGK-----KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEG  100 (354)
T ss_dssp             SCEEEEEEEETTE--EEEEETTTEEEEECS-SCE-----EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGG
T ss_pred             CCCeEEEEcCCCe--EEEEeCCCEEEEEeC-CCc-----eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCC
Confidence            4568999999986  445566799999973 221     112111   122356889999997   4455555443   3


Q ss_pred             ----CcEEEEEccCCC-CC---CCee-Eeecc-CCCeeEEEeCCCCCc
Q 020480          250 ----QYLLIWDLRTPS-VS---KPVQ-SVVAH-QSEVGVSILNASFRL  287 (325)
Q Consensus       250 ----g~i~iwd~~~~~-~~---~~~~-~~~~h-~~~v~~i~~~p~~~~  287 (325)
                          ..|..|+..... ..   +.+. .+... ......|+|.|+|.+
T Consensus       101 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~L  148 (354)
T 3a9g_A          101 GHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGML  148 (354)
T ss_dssp             GCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCE
T ss_pred             CCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcE
Confidence                567777765431 00   0111 12111 113467999999986

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=80.89  E-value=5.5  Score=36.69  Aligned_cols=50  Identities=16%  Similarity=0.371  Sum_probs=32.2

Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCcc-EEEEEeecCCCcEEEEEec
Q 020480          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGV-VEDVAWHLRHEYLFGSVGD  248 (325)
Q Consensus       193 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~v~~~p~~~~~l~s~~~  248 (325)
                      +++.++.||.++.||.++++      .+..+...... ..-+.|..++..++++.+.
T Consensus       499 lvf~g~~dg~l~A~D~~tG~------~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G  549 (582)
T 1flg_A          499 LVFTGTGDGYFKAFDAKSGK------ELWKFQTGSGIVSPPITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             EEEEECTTSEEEEEETTTCC------EEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             EEEEECCCCcEEEEECCCCC------EEEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence            78889999999999999884      35555433221 1225566677555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	325
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.004
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.003
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.001
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.003
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (128), Expect = 6e-09
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED 232
            L GH     G+ +       +LS +DD  + +WD       K+   M+    HE  V  
Sbjct: 242 TLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDY------KNKRCMKTLNAHEHFVTS 294

Query: 233 VAWHLRHEYLFGSVGDDQYLLIWD 256
           + +H    Y+  +   DQ + +W+
Sbjct: 295 LDFHKTAPYVV-TGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 34/169 (20%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG 176
             ++      E  R     Q+  LIA+ +    V V+  +    K  L         +  
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW 193

Query: 177 H---------STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE 227
                        G     S      LLSGS D  I +WD++      +   +     H+
Sbjct: 194 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS------TGMCLMTLVGHD 247

Query: 228 GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276
             V  V +H   +++  S  DD+ L +WD +     + ++++ AH+  V
Sbjct: 248 NWVRGVLFHSGGKFIL-SCADDKTLRVWDYKNK---RCMKTLNAHEHFV 292

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           L GH +    + +       ++S S+DA I +WD        + +  +  K H   V+D+
Sbjct: 13  LSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYE------TGDFERTLKGHTDSVQDI 65

Query: 234 AWHLRHEY 241
           ++    + 
Sbjct: 66  SFDHSGKL 73

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (123), Expect = 3e-08
 Identities = 25/157 (15%), Positives = 53/157 (33%), Gaps = 13/157 (8%)

Query: 108 GFGCANGKVQIIQQINHDGEVNRARYMPQNPFLI-ATKTVSAEVYVFDYSKHPSKPPLDG 166
           GF       +      H   V    +      ++  +   S +++    + + S      
Sbjct: 237 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296

Query: 167 ACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH 226
           + + ++   GH      ++ ++  + ++LSGS D  +  WD       KS   + + + H
Sbjct: 297 SGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDK------KSGNPLLMLQGH 349

Query: 227 EGVVEDVAWHLRHEY-----LFGSVGDDQYLLIWDLR 258
              V  VA            +F +   D    IW  +
Sbjct: 350 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 14/163 (8%)

Query: 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST 179
             ++ +  V      P +   IA  ++   V V+D         LD   S +    GH  
Sbjct: 199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD---SENESGTGHKD 255

Query: 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK------SLEAMQIFKVHEGVVEDV 233
             Y + +++     ++SGS D  + LW++  A          S      +  H+  V  V
Sbjct: 256 SVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 314

Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276
           A     EY+  S   D+ +L WD ++     P+  +  H++ V
Sbjct: 315 ATTQNDEYIL-SGSKDRGVLFWDKKS---GNPLLMLQGHRNSV 353

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 8e-08
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 9/101 (8%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG----- 228
            + H  + + +S         +S S D  + +WD          +      VH+      
Sbjct: 10  GKAHDADIFSVSAC---NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 229 -VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS 268
            V++ +        L  +      LL + +     +K V  
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF 107

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.0 bits (115), Expect = 3e-07
 Identities = 21/133 (15%), Positives = 42/133 (31%), Gaps = 17/133 (12%)

Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG 183
           H+ ++N   + P         T S +     +     +  +  +                
Sbjct: 225 HESDINAICFFPNGNAFA---TGSDDATCRLFDLRADQELMTYSHDN------IICGITS 275

Query: 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLF 243
           +S+SK     LL+G DD    +WD          +   +   H+  V  +        + 
Sbjct: 276 VSFSK-SGRLLLAGYDDFNCNVWDA------LKADRAGVLAGHDNRVSCLGVTDDGMAVA 328

Query: 244 GSVGDDQYLLIWD 256
            +   D +L IW+
Sbjct: 329 -TGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
             GH ++   + +         +GSDDA   L+D+ A  +                +  V
Sbjct: 222 FTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELM----TYSHDNIICGITSV 276

Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276
           ++      L  +  DD    +WD            +  H + V
Sbjct: 277 SFSKSGRLLL-AGYDDFNCNVWDALKA---DRAGVLAGHDNRV 315

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 182 YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEY 241
              +W+K     +    ++ ++ +++ +          +   K H G V  V W      
Sbjct: 11  SCHAWNK-DRTQIAICPNNHEVHIYEKS----GNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 242 LFGSVGDDQYLLIWD 256
           +  + G D+   +W 
Sbjct: 66  IV-TCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.3 bits (87), Expect = 9e-04
 Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEY---LFGSV 246
           K+      +   +    D  A+ +  +     +  +H+  V  ++     +     F + 
Sbjct: 288 KQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTT 347

Query: 247 GDDQYLLIWDLRTPS 261
           G D  + IWD+R+  
Sbjct: 348 GMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 9/70 (12%)

Query: 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199
            IA    + EV++++ S                 L+ H+ +  G+ W+      +++   
Sbjct: 21  QIAICPNNHEVHIYEKS--------GNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGT 71

Query: 200 DAQICLWDIN 209
           D    +W + 
Sbjct: 72  DRNAYVWTLK 81

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 7e-06
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 19/136 (13%)

Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG 183
            +G       +     L+ + +    + ++D                   LR        
Sbjct: 174 LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA-------------CLRVLEGHEEL 220

Query: 184 LSWSKFKEGHLLSGSDDAQICLWDINAA---PKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           +   +F    ++SG+ D +I +WD+ AA           ++    H G V  + +    E
Sbjct: 221 VRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD---E 277

Query: 241 YLFGSVGDDQYLLIWD 256
           +   S   D  +LIWD
Sbjct: 278 FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED 232
           R+   S    G+   ++ +  ++SG  D  I +WD N      +LE  +I   H G V  
Sbjct: 7   RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKN------TLECKRILTGHTGSVLC 60

Query: 233 VAWH 236
           + + 
Sbjct: 61  LQYD 64

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 9/81 (11%), Positives = 25/81 (30%), Gaps = 9/81 (11%)

Query: 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWH 236
           H +    L ++       +S   D  +  W            ++   K     V      
Sbjct: 264 HESCVLSLKFAY-CGKWFVSTGKDNLLNAWRT------PYGASIFQSK-ESSSVLSCDIS 315

Query: 237 LRHEYLFGSVGDDQYLLIWDL 257
           +  +Y+  +   D+   ++++
Sbjct: 316 VDDKYIV-TGSGDKKATVYEV 335

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 5e-05
 Identities = 10/86 (11%), Positives = 23/86 (26%), Gaps = 4/86 (4%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
            +        +      +  LL  S D  + ++  +   KN  L        ++  +   
Sbjct: 7   EQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQ---SLRYKHPLLCC 62

Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRT 259
            +    +           +L  DL  
Sbjct: 63  NFIDNTDLQIYVGTVQGEILKVDLIG 88

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 7/60 (11%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 220 MQIFKV---HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276
           MQI ++    +  + D+        L      D  L ++     + +  +   + ++  +
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLL-ITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (95), Expect = 7e-05
 Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWH 236
                 G +  + +E  + +GS D  I ++ +      + ++ ++    H+  V ++ W 
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSV-----KRPMKIIKALNAHKDGVNNLLWE 267

Query: 237 LRHEYLFGSVGDDQYLLIWD 256
                   S G D  +  W+
Sbjct: 268 --TPSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 16/71 (22%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           + GH+     L+ +      L+SGS D +I  W  +            + + H  ++  +
Sbjct: 9   ISGHNKGITALTVNP-----LISGSYDGRIMEWSSS-----------SMHQDHSNLIVSL 52

Query: 234 AWHLRHEYLFG 244
                 EY   
Sbjct: 53  DNSKAQEYSSI 63

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.1 bits (81), Expect = 0.004
 Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 2/35 (5%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI 208
           L  H      L W       L+S   DA I  W++
Sbjct: 254 LNAHKDGVNNLLWET--PSTLVSSGADACIKRWNV 286

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 7e-05
 Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 8/67 (11%)

Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED--VAWHLRHEYLFGSVGDDQ 250
              +   DA I +WD+       + + +Q + + +  + +  V           S+  D 
Sbjct: 265 KFATVGADATIRVWDV------TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

Query: 251 YLLIWDL 257
            L  ++L
Sbjct: 319 TLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 8/76 (10%)

Query: 133 YMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG 192
               +    AT    A + V+D +           C     L         +       G
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVT--------TSKCVQKWTLDKQQLGNQQVGVVATGNG 309

Query: 193 HLLSGSDDAQICLWDI 208
            ++S S D  +  +++
Sbjct: 310 RIISLSLDGTLNFYEL 325

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           LRGH T     +  +F++ ++++G+DD  I ++D        + + +     H+G V  +
Sbjct: 8   LRGHMTSVI--TCLQFEDNYVITGADDKMIRVYDSI------NKKFLLQLSGHDGGVWAL 59

Query: 234 AWHLRHEYLFGS 245
            +      + GS
Sbjct: 60  KYAHGGILVSGS 71

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 5e-04
 Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 8/102 (7%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
             GH+     LS S   +  L S   +  I  WDI+    N+         VH  ++  +
Sbjct: 8   RYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFP-----DVHATMITGI 61

Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275
                 +    +V  D +L +       V           S+
Sbjct: 62  KTT--SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQ 101

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.5 bits (82), Expect = 0.003
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252
            L +GS D  + +W++N   K      +         V  V W   +E    S G D  +
Sbjct: 238 RLATGSLDNSVIVWNMN---KPSDHPIIIKGAHAMSSVNSVIWL--NETTIVSAGQDSNI 292

Query: 253 LIWDL 257
             W++
Sbjct: 293 KFWNV 297

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 5e-04
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 186 WSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGS 245
             +F +  +++ SDD  + LWD+      ++L  ++      GVV  +            
Sbjct: 265 CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE-SGGSGGVVWRIRASNTKLVCAVG 323

Query: 246 VGD---DQYLLIWDL 257
             +   +  LL+ D 
Sbjct: 324 SRNGTEETKLLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           L+GH    + ++  +F    ++SGSDD  + +W         + + ++    H G V   
Sbjct: 12  LKGHD--DHVITCLQFCGNRIVSGSDDNTLKVWSA------VTGKCLRTLVGHTGGVWSS 63

Query: 234 AWH 236
              
Sbjct: 64  QMR 66

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 189 FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248
            K+  L+SG+ D+ + +WDI           +Q  +        V     ++    +  D
Sbjct: 225 LKDNILVSGNADSTVKIWDIKTGQC------LQTLQGPNKHQSAVTCLQFNKNFVITSSD 278

Query: 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNAS 284
           D  + +WDL+T    + + ++ +  S   V  + AS
Sbjct: 279 DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 314

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 9/66 (13%), Positives = 25/66 (37%), Gaps = 8/66 (12%)

Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGV-VEDVAWHLRHEYLFGSVGDDQY 251
            + S S D  I +W++       +L+  +   V   +  + +      + L  S+  + +
Sbjct: 252 KIASASADKTIKIWNV------ATLKVEKTIPVGTRIEDQQLGIIWTKQALV-SISANGF 304

Query: 252 LLIWDL 257
           +   + 
Sbjct: 305 INFVNP 310

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	325
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.94
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.93
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.93
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.93
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.91
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.91
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.91
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.9
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.9
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.88
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.88
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.87
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.86
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.85
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.83
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.83
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.83
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.8
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.79
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.78
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.77
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.77
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.77
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.75
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.74
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.72
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.67
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.53
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.48
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.46
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.46
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.43
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.39
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.36
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.35
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.27
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.27
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.21
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.14
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.83
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.79
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.58
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.32
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.25
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.2
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.14
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.13
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.13
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.1
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.07
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.05
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.88
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.85
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.71
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.65
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.59
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.51
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.41
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.22
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.16
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.04
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.93
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.72
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.6
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.53
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.32
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.17
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.28
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	92.66
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	91.7
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	90.88
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	89.44
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	88.19
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	86.55
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	85.59

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=9.6e-27  Score=198.95  Aligned_cols=220  Identities=14%  Similarity=0.096  Sum_probs=175.4

Q ss_pred             HHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCC
Q 020480           19 EEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARH   98 (325)
Q Consensus        19 ~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~   98 (325)
                      ..+.+|+.+.+.....+..|..  ++.+++|+|++.          .++.|...     +.|.+|++.-.          
T Consensus        38 ~~v~i~~~~~~~~~~~~~~H~~--~v~~~~~sp~g~----------~latg~~d-----g~i~iwd~~~~----------   90 (311)
T d1nr0a1          38 TSVYTVPVGSLTDTEIYTEHSH--QTTVAKTSPSGY----------YCASGDVH-----GNVRIWDTTQT----------   90 (311)
T ss_dssp             TEEEEEETTCSSCCEEECCCSS--CEEEEEECTTSS----------EEEEEETT-----SEEEEEESSST----------
T ss_pred             CEEEEEECCCCceeEEEcCCCC--CEEEEEEeCCCC----------eEeccccC-----ceEeeeeeecc----------
Confidence            3577888888777766666654  599999999874          56666543     47899876311          


Q ss_pred             CCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEec--CCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480           99 YDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTV--SAEVYVFDYSKHPSKPPLDGACSPDLRLRG  176 (325)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  176 (325)
                                     ..........|.+.|.+++|+|++ ++|++++.  +..+++|++..          ......+.+
T Consensus        91 ---------------~~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~~~~~~~~~v~~~~~----------~~~~~~l~~  144 (311)
T d1nr0a1          91 ---------------THILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDT----------GTSNGNLTG  144 (311)
T ss_dssp             ---------------TCCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTT----------CCBCBCCCC
T ss_pred             ---------------ccccccccccccCccccccccccc-ccccccccccccccccccccc----------ccccccccc
Confidence                           112222345699999999999998 67777765  45699999986          344566789


Q ss_pred             CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEE
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD  256 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd  256 (325)
                      |...|++++|+|+++.++++|+.||.|++||++..      .....+..|...|++++|+|++ .++++++.|+.|++||
T Consensus       145 h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~------~~~~~~~~~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d  217 (311)
T d1nr0a1         145 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF------KFKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYN  217 (311)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB------EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEE
T ss_pred             cccccccccccccceeeeccccccccccccccccc------ccccccccccccccccccCccc-cccccccccccccccc
Confidence            99999999999999867999999999999999976      4577788899999999999987 6999999999999999


Q ss_pred             ccCCCCCCCeeEe-------eccCCCeeEEEeCCCCCc--cCCCCceEEeeecc
Q 020480          257 LRTPSVSKPVQSV-------VAHQSEVGVSILNASFRL--SHEDTCTCTHRHSR  301 (325)
Q Consensus       257 ~~~~~~~~~~~~~-------~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~  301 (325)
                      ++....   +..+       .+|...|++++|+|++.+  +++.|+++++|+++
T Consensus       218 ~~~~~~---~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~  268 (311)
T d1nr0a1         218 GVDGTK---TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA  268 (311)
T ss_dssp             TTTCCE---EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cccccc---cccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence            998763   3333       468899999999999985  88899999999875

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=4.3e-25  Score=193.01  Aligned_cols=218  Identities=15%  Similarity=0.181  Sum_probs=168.0

Q ss_pred             CceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEE-E
Q 020480           43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ-Q  121 (325)
Q Consensus        43 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  121 (325)
                      |+.+++|+|++.          .+++|+.     +..|.+|+..                          .+++..+. .
T Consensus         9 pIt~~~~s~dg~----------~la~~~~-----~~~i~iw~~~--------------------------~~~~~~~~~l   47 (371)
T d1k8kc_           9 PISCHAWNKDRT----------QIAICPN-----NHEVHIYEKS--------------------------GNKWVQVHEL   47 (371)
T ss_dssp             CCCEEEECTTSS----------EEEEECS-----SSEEEEEEEE--------------------------TTEEEEEEEE
T ss_pred             CeEEEEECCCCC----------EEEEEeC-----CCEEEEEECC--------------------------CCCEEEEEEe
Confidence            788999999875          4555543     3479999874                          12333333 3


Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      .+|.++|++++|+|++ ++|++|+.|+.|+||++..        +...+...+.+|...|++++|+|++. .|++|+.|+
T Consensus        48 ~gH~~~V~~l~fsp~~-~~l~s~s~D~~i~vWd~~~--------~~~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~  117 (371)
T d1k8kc_          48 KEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKG--------RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSR  117 (371)
T ss_dssp             ECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEET--------TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             cCCCCCEEEEEECCCC-CEEEEEECCCeEEEEeecc--------cccccccccccccccccccccccccc-cceeecccC
Confidence            4799999999999988 7999999999999999976        33344556678999999999999998 899999999


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCC---------------CCe
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS---------------KPV  266 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~---------------~~~  266 (325)
                      .+++|++.......  ........|...|.+++|+|++ .+|++|+.|++|++||+......               ..+
T Consensus       118 ~i~i~~~~~~~~~~--~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (371)
T d1k8kc_         118 VISICYFEQENDWW--VCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM  194 (371)
T ss_dssp             SEEEEEEETTTTEE--EEEEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEE
T ss_pred             cceeeeeecccccc--cccccccccccccccccccccc-cceeccccCcEEEEEeeccCccccccccccccccccceeee
Confidence            99999988654311  1234456788999999999987 68999999999999998754311               123


Q ss_pred             eEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecceee-------eccCeeEEEe
Q 020480          267 QSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYLL-------YKFPFFVLVF  314 (325)
Q Consensus       267 ~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~-------~~~~~~~~~~  314 (325)
                      .....|...|.+++|+|+|..  +++.|+++++|+.....       ...|+.++.|
T Consensus       195 ~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~f  251 (371)
T d1k8kc_         195 FESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF  251 (371)
T ss_dssp             EECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEE
T ss_pred             eeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeee
Confidence            445678899999999999885  78899999999864321       2345566655

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2.5e-25  Score=190.54  Aligned_cols=244  Identities=13%  Similarity=0.119  Sum_probs=174.8

Q ss_pred             hhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcc
Q 020480           16 LINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEND   95 (325)
Q Consensus        16 ~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~   95 (325)
                      ..|.+++||+.++......+..|.  -++.+++|.|++.          .++.|+...     .+.++............
T Consensus        74 s~Dg~v~iWd~~~~~~~~~~~~~~--~~v~~v~~~~~~~----------~l~~~~~d~-----~i~~~~~~~~~~~~~~~  136 (340)
T d1tbga_          74 SQDGKLIIWDSYTTNKVHAIPLRS--SWVMTCAYAPSGN----------YVACGGLDN-----ICSIYNLKTREGNVRVS  136 (340)
T ss_dssp             ETTTEEEEEETTTTEEEEEEECSC--SCEEEEEECTTSS----------EEEEEETTC-----CEEEEESSSSCSCCCEE
T ss_pred             ECCCceeeeecccceeEEEEeccc--ccEEeeEeeccce----------eeeeecccc-----eeecccccccccccccc
Confidence            367889999998876665555555  4589999999875          334443321     22222221100000000


Q ss_pred             c--C-------------C----CCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCC
Q 020480           96 A--R-------------H----YDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYS  156 (325)
Q Consensus        96 ~--~-------------~----~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~  156 (325)
                      .  .             .    ..........+. ............+...+....+.+.+ .++++|+.|+.|++||++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~i~d~~  214 (340)
T d1tbga_         137 RELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD-IETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVR  214 (340)
T ss_dssp             EEECCCSSCEEEEEEEETTEEEEEETTTEEEEEE-TTTTEEEEEEECCSSCEEEEEECTTS-SEEEEEETTTEEEEEETT
T ss_pred             eecccccccccccccccccccccccccccccccc-cccccccccccccceeEeeecccccc-ceeEEeecCceEEEEECC
Confidence            0  0             0    000000000000 11222333455677888999999877 799999999999999998


Q ss_pred             CCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEe--eecCCccEEEEE
Q 020480          157 KHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI--FKVHEGVVEDVA  234 (325)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~v~  234 (325)
                      .          ..++..+.+|...|++++|+|++. +|++|+.||.|++||++...      ....  ...+...|.+++
T Consensus       215 ~----------~~~~~~~~~h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~~~~~------~~~~~~~~~~~~~i~~~~  277 (340)
T d1tbga_         215 E----------GMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQ------ELMTYSHDNIICGITSVS  277 (340)
T ss_dssp             T----------TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE------EEEEECCTTCCSCEEEEE
T ss_pred             C----------CcEEEEEeCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeecccc------cccccccccccCceEEEE
Confidence            7          455778889999999999999998 89999999999999998763      2332  345667899999


Q ss_pred             eecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeee
Q 020480          235 WHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRH  299 (325)
Q Consensus       235 ~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~  299 (325)
                      |+|++ .+|++|+.||.|++||+++++   .+..+.+|.++|++++|+|++.+  +++.|+++++|+
T Consensus       278 ~s~~~-~~l~~g~~dg~i~iwd~~~~~---~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         278 FSKSG-RLLLAGYDDFNCNVWDALKAD---RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECSSS-CEEEEEETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ECCCC-CEEEEEECCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            99987 699999999999999999887   48899999999999999999885  789999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=1.3e-24  Score=185.58  Aligned_cols=163  Identities=13%  Similarity=0.106  Sum_probs=141.1

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC-
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-  199 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-  199 (325)
                      ..+|...|++++|+|++ ++||+|+.||.|++|++..        ........+.+|..+|.+++|+|++. ++++++. 
T Consensus        54 ~~~H~~~v~~~~~sp~g-~~latg~~dg~i~iwd~~~--------~~~~~~~~~~~~~~~v~~v~~s~d~~-~l~~~~~~  123 (311)
T d1nr0a1          54 YTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQ--------TTHILKTTIPVFSGPVKDISWDSESK-RIAAVGEG  123 (311)
T ss_dssp             ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSS--------TTCCEEEEEECSSSCEEEEEECTTSC-EEEEEECC
T ss_pred             EcCCCCCEEEEEEeCCC-CeEeccccCceEeeeeeec--------cccccccccccccCcccccccccccc-cccccccc
Confidence            35799999999999998 7999999999999999987        33333456789999999999999998 7888875 


Q ss_pred             -CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeE
Q 020480          200 -DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGV  278 (325)
Q Consensus       200 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  278 (325)
                       +..+++|+++.+      .....+.+|...|.+++|+|+++.+|++|+.||.|++||+++.+.   ...+..|..+|++
T Consensus       124 ~~~~~~v~~~~~~------~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~---~~~~~~~~~~i~~  194 (311)
T d1nr0a1         124 RERFGHVFLFDTG------TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF---KSTFGEHTKFVHS  194 (311)
T ss_dssp             SSCSEEEEETTTC------CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE---EEEECCCSSCEEE
T ss_pred             ccccccccccccc------cccccccccccccccccccccceeeeccccccccccccccccccc---ccccccccccccc
Confidence             456999999876      345667889999999999999877899999999999999998873   7778889999999


Q ss_pred             EEeCCCCCc--cCCCCceEEeeecce
Q 020480          279 SILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       279 i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      ++|+|++.+  +++.|+.+++|+.+.
T Consensus       195 v~~~p~~~~l~~~~~d~~v~~~d~~~  220 (311)
T d1nr0a1         195 VRYNPDGSLFASTGGDGTIVLYNGVD  220 (311)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             cccCcccccccccccccccccccccc
Confidence            999999985  788899999998643

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.5e-24  Score=183.12  Aligned_cols=245  Identities=18%  Similarity=0.184  Sum_probs=179.6

Q ss_pred             hhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCC----------------CCCCCe
Q 020480           16 LINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTS----------------ENEPNY   79 (325)
Q Consensus        16 ~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~   79 (325)
                      ..|.++|||+.++..+...+..|..  ++.+++|.|+....          +.+....                ..+...
T Consensus        36 s~Dg~i~iWd~~~~~~~~~~~~h~~--~V~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (317)
T d1vyhc1          36 SEDATIKVWDYETGDFERTLKGHTD--SVQDISFDHSGKLL----------ASCSADMTIKLWDFQGFECIRTMHGHDHN  103 (317)
T ss_dssp             ESSSCEEEEETTTCCCCEEECCCSS--CEEEEEECTTSSEE----------EEEETTSCCCEEETTSSCEEECCCCCSSC
T ss_pred             eCCCeEEEEECCCCCEEEEEeCCCC--cEEEEeeecccccc----------ccccccccccccccccccccccccccccc
Confidence            3567899999988777666666654  48899999986522          1211110                011112


Q ss_pred             EEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCC
Q 020480           80 LMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP  159 (325)
Q Consensus        80 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~  159 (325)
                      +....+. |.......    ...++.+..|+...++. ......|...+.+++|++++ .+|++|+.||.|++|+...  
T Consensus       104 ~~~~~~~-~~~~~~~~----~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~~~~~~~--  174 (317)
T d1vyhc1         104 VSSVSIM-PNGDHIVS----ASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVAT--  174 (317)
T ss_dssp             EEEEEEC-SSSSEEEE----EETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT--
T ss_pred             ceeeecc-CCCceEEe----eccCcceeEeeccccee-eeEEccCCCcceeeecccCC-CEEEEEeCCCeEEEEeecc--
Confidence            2222111 10000000    00112222233333332 22345689999999999988 7999999999999999987  


Q ss_pred             CCCCCCCCCCCcEEEecCCCceEEEEecCCCC-------------------CeEEEEeCCCcEEEEeCCCCCCCCcccce
Q 020480          160 SKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE-------------------GHLLSGSDDAQICLWDINAAPKNKSLEAM  220 (325)
Q Consensus       160 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-------------------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  220 (325)
                              ......+.+|...+..+.|+|+..                   ..+++++.|+.|++||++.+      .++
T Consensus       175 --------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~------~~~  240 (317)
T d1vyhc1         175 --------KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG------MCL  240 (317)
T ss_dssp             --------CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT------EEE
T ss_pred             --------ceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC------cEE
Confidence                    455677889999999999988642                   26899999999999999987      568


Q ss_pred             EeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEee
Q 020480          221 QIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHR  298 (325)
Q Consensus       221 ~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~  298 (325)
                      ..+.+|...|.+++|+|++ .+|++|+.||.|++||+++++   ++..+.+|..+|++++|+|++.+  +++.|+++++|
T Consensus       241 ~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~---~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iW  316 (317)
T d1vyhc1         241 MTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKR---CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW  316 (317)
T ss_dssp             EEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSC---CCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             EEEeCCCCCEEEEEECCCC-CEEEEEECCCeEEEEECCCCc---EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEe
Confidence            8889999999999999987 689999999999999999887   48899999999999999999885  88999999999


Q ss_pred             e
Q 020480          299 H  299 (325)
Q Consensus       299 ~  299 (325)
                      +
T Consensus       317 d  317 (317)
T d1vyhc1         317 E  317 (317)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=6.6e-25  Score=191.86  Aligned_cols=229  Identities=13%  Similarity=0.091  Sum_probs=172.0

Q ss_pred             hHHHHhhhHhcChh--HHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCc
Q 020480           17 INEEYKIWKKNTPF--LYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEN   94 (325)
Q Consensus        17 ~~~~~~iw~~~~~~--~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~   94 (325)
                      .+.+|+||+.+...  +...+..|..  ++.+++|+|++.          .++.++.     +..+++|++.-       
T Consensus        27 ~~~~i~iw~~~~~~~~~~~~l~gH~~--~V~~l~fsp~~~----------~l~s~s~-----D~~i~vWd~~~-------   82 (371)
T d1k8kc_          27 NNHEVHIYEKSGNKWVQVHELKEHNG--QVTGVDWAPDSN----------RIVTCGT-----DRNAYVWTLKG-------   82 (371)
T ss_dssp             SSSEEEEEEEETTEEEEEEEEECCSS--CEEEEEEETTTT----------EEEEEET-----TSCEEEEEEET-------
T ss_pred             CCCEEEEEECCCCCEEEEEEecCCCC--CEEEEEECCCCC----------EEEEEEC-----CCeEEEEeecc-------
Confidence            34679999987654  3344455554  589999999874          4555543     34799998751       


Q ss_pred             ccCCCCcccCCCCCCCCCCCceE-EEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE
Q 020480           95 DARHYDDDRSDFGGFGCANGKVQ-IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR  173 (325)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~  173 (325)
                                         .... ......|...|++++|+|++ +.|++|+.|+.|++|++....      ........
T Consensus        83 -------------------~~~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~------~~~~~~~~  136 (371)
T d1k8kc_          83 -------------------RTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQEN------DWWVCKHI  136 (371)
T ss_dssp             -------------------TEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTT------TEEEEEEE
T ss_pred             -------------------ccccccccccccccccccccccccc-ccceeecccCcceeeeeeccc------cccccccc
Confidence                               1222 23344688999999999998 799999999999999987611      00111223


Q ss_pred             EecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCC------------cccceEeeecCCccEEEEEeecCCCc
Q 020480          174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK------------SLEAMQIFKVHEGVVEDVAWHLRHEY  241 (325)
Q Consensus       174 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~------------~~~~~~~~~~~~~~v~~v~~~p~~~~  241 (325)
                      ...|...|.+++|+|++. +|++|+.|+.|++||........            ....+.....|...|.+++|+|++ .
T Consensus       137 ~~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~  214 (371)
T d1k8kc_         137 KKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-S  214 (371)
T ss_dssp             CTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-S
T ss_pred             cccccccccccccccccc-ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc-c
Confidence            457889999999999998 89999999999999987543210            112345567788999999999987 6


Q ss_pred             EEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc-cCCCCceEEeeec
Q 020480          242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL-SHEDTCTCTHRHS  300 (325)
Q Consensus       242 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~  300 (325)
                      +|++++.|+.|++||++.+.   .+..+..|..+|.+++|+|++++ .++.|+.+++|..
T Consensus       215 ~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~  271 (371)
T d1k8kc_         215 RVAWVSHDSTVCLADADKKM---AVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTY  271 (371)
T ss_dssp             EEEEEETTTEEEEEEGGGTT---EEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEE
T ss_pred             cccccccCCcceEEeeeccc---ceeeeecccccceeeeecCCCCEEEEEcCCceEEEEe
Confidence            89999999999999999887   48888999999999999999986 5555776666543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.5e-23  Score=175.82  Aligned_cols=221  Identities=13%  Similarity=0.137  Sum_probs=172.1

Q ss_pred             HHHHhhhHhcChhHHHHh---hhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCc
Q 020480           18 NEEYKIWKKNTPFLYDLV---ITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEN   94 (325)
Q Consensus        18 ~~~~~iw~~~~~~~y~~~---~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~   94 (325)
                      +..++||+.+.+..-..+   ......-++.+++|+|++.          .++.|+.     ++.|.+|++.-.      
T Consensus        71 dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~----------~l~s~~~-----dg~i~iwd~~~~------  129 (337)
T d1gxra_          71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC----------TLIVGGE-----ASTLSIWDLAAP------  129 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS----------EEEEEES-----SSEEEEEECCCC------
T ss_pred             CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC----------EEEEeec-----cccccccccccc------
Confidence            456899988664432222   1222233588999999874          4666654     347888876311      


Q ss_pred             ccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE
Q 020480           95 DARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL  174 (325)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  174 (325)
                                        .+++ ......|...|.++.|+|++ .++++++.++.|++|++..          .......
T Consensus       130 ------------------~~~~-~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~----------~~~~~~~  179 (337)
T d1gxra_         130 ------------------TPRI-KAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHN----------QTLVRQF  179 (337)
T ss_dssp             --------------------EE-EEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT----------TEEEEEE
T ss_pred             ------------------cccc-cccccccccccccccccccc-ccccccccccccccccccc----------ccccccc
Confidence                              1222 22345688999999999988 7999999999999999987          3446667


Q ss_pred             ecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEE
Q 020480          175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI  254 (325)
Q Consensus       175 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~i  254 (325)
                      .+|...+.+++|++++. .+++|+.|+.+++||++.+      ..+..+ .|...|.+++|+|++ .++++|+.|+.+++
T Consensus       180 ~~~~~~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~~------~~~~~~-~~~~~i~~l~~~~~~-~~l~~~~~d~~i~i  250 (337)
T d1gxra_         180 QGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREG------RQLQQH-DFTSQIFSLGYCPTG-EWLAVGMESSNVEV  250 (337)
T ss_dssp             CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTT------EEEEEE-ECSSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred             ccccccccccccccccc-ccccccccccccccccccc------eeeccc-ccccceEEEEEcccc-cccceecccccccc
Confidence            78999999999999998 8999999999999999876      334444 478899999999987 68999999999999


Q ss_pred             EEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          255 WDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       255 wd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      ||++...    ......|...|++++|+|++.+  +++.|+.+++|+...
T Consensus       251 ~d~~~~~----~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~  296 (337)
T d1gxra_         251 LHVNKPD----KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             EETTSSC----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ccccccc----cccccccccccceEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            9999877    4566789999999999999984  788999999998643

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.9e-23  Score=182.55  Aligned_cols=233  Identities=17%  Similarity=0.257  Sum_probs=163.9

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+..+++|+.........+..|..  ++.+++|.++..          .++.++..     ..+.+++..          
T Consensus       141 ~dg~v~i~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~----------~~~~~~~~-----~~i~~~d~~----------  193 (388)
T d1erja_         141 EDRLIRIWDIENRKIVMILQGHEQ--DIYSLDYFPSGD----------KLVSGSGD-----RTVRIWDLR----------  193 (388)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSS----------EEEEEETT-----SEEEEEETT----------
T ss_pred             cccccccccccccccccccccccc--cccccccccccc----------cccccccc-----eeeeeeecc----------
Confidence            456788898877665555544543  477888888653          44455432     366776542          


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG  176 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  176 (325)
                                      .  ........+.....++.+.+....+|++|+.||.|++|+.........   .........+
T Consensus       194 ----------------~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~---~~~~~~~~~~  252 (388)
T d1erja_         194 ----------------T--GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER---LDSENESGTG  252 (388)
T ss_dssp             ----------------T--TEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE---EC------CC
T ss_pred             ----------------c--cccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCcccee---eccccccccC
Confidence                            1  122234455556667777775558999999999999999986210000   0011223357


Q ss_pred             CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCC------cccceEeeecCCccEEEEEeecCCCcEEEEEecCC
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK------SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ  250 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~------~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg  250 (325)
                      |...|++++|+|++. +|++|+.||.|++||++......      ...+......|...|.+++|+|++ .+|++|+.||
T Consensus       253 h~~~v~~l~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg  330 (388)
T d1erja_         253 HKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDR  330 (388)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTS
T ss_pred             CCCCEEEEEECCCCC-EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCC-CEEEEEeCCC
Confidence            899999999999998 89999999999999998764321      112345566789999999999987 6999999999


Q ss_pred             cEEEEEccCCCCCCCeeEeeccCCCeeEEEe------CCCCCc--cCCCCceEEeeecce
Q 020480          251 YLLIWDLRTPSVSKPVQSVVAHQSEVGVSIL------NASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       251 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~------~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      .|++||+++++   ++..+.+|.+.|.++++      +|++.+  +++.|+++++|+++.
T Consensus       331 ~i~vwd~~~~~---~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         331 GVLFWDKKSGN---PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             EEEEEETTTCC---EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EEEEEECCCCc---EEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence            99999999988   48899999999999986      456664  889999999999754

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.8e-22  Score=173.69  Aligned_cols=204  Identities=14%  Similarity=0.147  Sum_probs=163.5

Q ss_pred             CCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEEE
Q 020480           40 LEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQII  119 (325)
Q Consensus        40 ~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (325)
                      ..-++.+++|+|++.          .++.|.      +..|.||++.-+.                      ....+...
T Consensus        50 H~~~V~~v~fs~~g~----------~latg~------dg~V~iWd~~~~~----------------------~~~~~~~~   91 (337)
T d1gxra_          50 HGEVVCAVTISNPTR----------HVYTGG------KGCVKVWDISHPG----------------------NKSPVSQL   91 (337)
T ss_dssp             CSSCCCEEEECSSSS----------EEEEEC------BSEEEEEETTSTT----------------------CCSCSEEE
T ss_pred             CCCcEEEEEECCCCC----------EEEEEE------CCEEEEEEccCCc----------------------ccceeEEe
Confidence            345688999999874          455443      2479999764210                      11223444


Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ....|.+.|.+++|+|++ ++|++|+.||.|++||+..        ........+..|...+..++|+|++. .+++++.
T Consensus        92 ~~~~h~~~I~~v~~s~dg-~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~  161 (337)
T d1gxra_          92 DCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAA--------PTPRIKAELTSSAPACYALAISPDSK-VCFSCCS  161 (337)
T ss_dssp             ECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCC--------C--EEEEEEECSSSCEEEEEECTTSS-EEEEEET
T ss_pred             eecCCCCcEEEEEEcCCC-CEEEEeecccccccccccc--------cccccccccccccccccccccccccc-ccccccc
Confidence            456799999999999998 7999999999999999876        22333556788999999999999988 8999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS  279 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i  279 (325)
                      |+.|++|+++..      .+......|...|.+++|++++ ..+++|+.|+.+++||+++++.   +..+ .|...|.++
T Consensus       162 d~~i~~~~~~~~------~~~~~~~~~~~~v~~l~~s~~~-~~~~~~~~d~~v~i~d~~~~~~---~~~~-~~~~~i~~l  230 (337)
T d1gxra_         162 DGNIAVWDLHNQ------TLVRQFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQ---LQQH-DFTSQIFSL  230 (337)
T ss_dssp             TSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE---EEEE-ECSSCEEEE
T ss_pred             cccccccccccc------cccccccccccccccccccccc-ccccccccccccccccccccee---eccc-ccccceEEE
Confidence            999999999876      4567778899999999999987 6899999999999999998873   5544 588999999


Q ss_pred             EeCCCCCc--cCCCCceEEeeecce
Q 020480          280 ILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       280 ~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      +|+|++.+  +++.|+.+++|+++.
T Consensus       231 ~~~~~~~~l~~~~~d~~i~i~d~~~  255 (337)
T d1gxra_         231 GYCPTGEWLAVGMESSNVEVLHVNK  255 (337)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTS
T ss_pred             EEcccccccceeccccccccccccc
Confidence            99999885  788999999998754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=3e-23  Score=175.20  Aligned_cols=163  Identities=14%  Similarity=0.186  Sum_probs=128.8

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      .....+.+++|+|++ .++++|+.||.|++||+..        +... ......|...|++++|+|++. ++++++.|+.
T Consensus       134 ~~~~~~~~~~~s~~~-~~l~~g~~dg~i~~~d~~~--------~~~~-~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~  202 (299)
T d1nr0a2         134 PISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSG--------ASVS-EVKTIVHPAEITSVAFSNNGA-FLVATDQSRK  202 (299)
T ss_dssp             ECSSCEEEEEECTTS-CEEEEEETTSEEEEEEEET--------TEEE-EEEEEECSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             ccccccccccccccc-ccccccccccccccccccc--------cccc-ccccccccccccccccccccc-cccccccccc
Confidence            455678899999988 7999999999999999976        2111 123457899999999999998 8999999999


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeec-cCCCeeEEEe
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-HQSEVGVSIL  281 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~i~~  281 (325)
                      |++||+..+...   .....+.+|...|++++|+|++ .+|++|+.||.|++||+++.... ++..... +...+.++.|
T Consensus       203 i~~~~~~~~~~~---~~~~~~~~h~~~v~~l~~s~~~-~~l~sgs~dg~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~  277 (299)
T d1nr0a2         203 VIPYSVANNFEL---AHTNSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKPSDH-PIIIKGAHAMSSVNSVIW  277 (299)
T ss_dssp             EEEEEGGGTTEE---SCCCCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCTTSC-CEEETTSSTTSCEEEEEE
T ss_pred             cccccccccccc---cccccccccccccccccccccc-cceEEEcCCCEEEEEECCCCCcc-eEEEecCCCCCcEEEEEE
Confidence            999999875321   2344567799999999999987 69999999999999999987642 2333333 4567788877


Q ss_pred             CCCCCc-cCCCCceEEeeecc
Q 020480          282 NASFRL-SHEDTCTCTHRHSR  301 (325)
Q Consensus       282 ~p~~~~-~~~~d~~~~~~~~~  301 (325)
                      .++..+ +++.|+++++|++.
T Consensus       278 ~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         278 LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EETTEEEEEETTSCEEEEECC
T ss_pred             CCCCEEEEEeCCCEEEEEecc
Confidence            665554 88899999999874

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=2.4e-22  Score=171.69  Aligned_cols=166  Identities=13%  Similarity=0.149  Sum_probs=136.7

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ..+|.+.|++++|+|++ .+||+|+.||.|+|||+..          ...+..+..|...|.+++|+|++. ++++|+.|
T Consensus        51 L~GH~~~I~~l~~s~~~-~~l~sgs~Dg~v~iWd~~~----------~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~d  118 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYT----------TNKVHAIPLRSSWVMTCAYAPSGN-YVACGGLD  118 (340)
T ss_dssp             ECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTT----------TEEEEEEECSCSCEEEEEECTTSS-EEEEEETT
T ss_pred             ECCCCCCEEEEEECCCC-CEEEEEECCCceeeeeccc----------ceeEEEEecccccEEeeEeeccce-eeeeeccc
Confidence            45799999999999988 7999999999999999987          355778889999999999999988 89999999


Q ss_pred             CcEEEEeCCCCCCC------------------------------------------------------------------
Q 020480          201 AQICLWDINAAPKN------------------------------------------------------------------  214 (325)
Q Consensus       201 g~i~iwd~~~~~~~------------------------------------------------------------------  214 (325)
                      +.+++|+.......                                                                  
T Consensus       119 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (340)
T d1tbga_         119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL  198 (340)
T ss_dssp             CCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             ceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccce
Confidence            99888886543110                                                                  


Q ss_pred             ---------------CcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe--eccCCCee
Q 020480          215 ---------------KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VAHQSEVG  277 (325)
Q Consensus       215 ---------------~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~  277 (325)
                                     ....++..+.+|...|++++|+|++ .+|++|+.||.|++||++....   +..+  ..+...|.
T Consensus       199 ~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~-~~l~s~s~d~~i~~~~~~~~~~---~~~~~~~~~~~~i~  274 (340)
T d1tbga_         199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQE---LMTYSHDNIICGIT  274 (340)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE---EEEECCTTCCSCEE
T ss_pred             eEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeeccccc---ccccccccccCceE
Confidence                           0002345567789999999999987 6999999999999999998763   4443  45677899


Q ss_pred             EEEeCCCCCc--cCCCCceEEeeecce
Q 020480          278 VSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       278 ~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      +++|+|++.+  +++.|+.+++|++..
T Consensus       275 ~~~~s~~~~~l~~g~~dg~i~iwd~~~  301 (340)
T d1tbga_         275 SVSFSKSGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             EEEECSSSCEEEEEETTSCEEEEETTT
T ss_pred             EEEECCCCCEEEEEECCCEEEEEECCC
Confidence            9999999985  788999999998753

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.2e-22  Score=174.12  Aligned_cols=226  Identities=14%  Similarity=0.147  Sum_probs=159.1

Q ss_pred             hhhHHHHhhhHhcChhHHHHhhhc------CCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECC
Q 020480           15 RLINEEYKIWKKNTPFLYDLVITH------ALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLP   88 (325)
Q Consensus        15 ~~~~~~~~iw~~~~~~~y~~~~~~------~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~   88 (325)
                      ...|.++|||+.+.......+..+      ...-|+.+++|.|++.          .++.+..   +.++.+.++.+.  
T Consensus        83 gs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~----------~l~~~~~---~~~~~~~~~~~~--  147 (325)
T d1pgua1          83 GDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR----------RLCVVGE---GRDNFGVFISWD--  147 (325)
T ss_dssp             EETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS----------EEEEEEC---CSSCSEEEEETT--
T ss_pred             EeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCC----------ccceeec---cccceEEEEeec--
Confidence            346788999988764433222211      1223588999999874          3444332   123345555431  


Q ss_pred             CCCCCcccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCC
Q 020480           89 LDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGAC  168 (325)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~  168 (325)
                                              .++ ......+|...|++++|+|+++.++++++.||.|++|+...          .
T Consensus       148 ------------------------~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~----------~  192 (325)
T d1pgua1         148 ------------------------SGN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP----------F  192 (325)
T ss_dssp             ------------------------TCC-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT----------B
T ss_pred             ------------------------ccc-cceeeeecccccccccccccccceEEEeecccccccccccc----------c
Confidence                                    111 12223469999999999999877788999999999999875          1


Q ss_pred             CCcEE---EecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEee---cCCCcE
Q 020480          169 SPDLR---LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWH---LRHEYL  242 (325)
Q Consensus       169 ~~~~~---~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~---p~~~~~  242 (325)
                      +....   ...|...|++++|+|++..++++|+.||.|++||++.+      ..+..+.+|...+..+.|+   |++ .+
T Consensus       193 ~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~------~~~~~l~~~~~~v~~~~~s~~~~dg-~~  265 (325)
T d1pgua1         193 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG------EFLKYIEDDQEPVQGGIFALSWLDS-QK  265 (325)
T ss_dssp             EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC------CEEEECCBTTBCCCSCEEEEEESSS-SE
T ss_pred             ccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccc------cccccccccccccccceeeeeccCC-CE
Confidence            21222   34677889999999986658999999999999999877      4577788887776655555   455 68


Q ss_pred             EEEEecCCcEEEEEccCCCCCCCeeEeeccCCC--ee--EEEeCCCCCc-cCCCCceEEeeec
Q 020480          243 FGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE--VG--VSILNASFRL-SHEDTCTCTHRHS  300 (325)
Q Consensus       243 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~--v~--~i~~~p~~~~-~~~~d~~~~~~~~  300 (325)
                      |++++.|+.|+|||+++++   ++..+..|...  +.  ++.|.+++.+ +++.|+++++|++
T Consensus       266 l~s~s~D~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         266 FATVGADATIRVWDVTTSK---CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEETTSEEEEEETTTTE---EEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEEeCCCeEEEEECCCCC---EEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            9999999999999999887   37766555443  33  4455566655 8899999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.6e-21  Score=167.07  Aligned_cols=208  Identities=11%  Similarity=0.079  Sum_probs=155.1

Q ss_pred             CceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCceEE---E
Q 020480           43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQI---I  119 (325)
Q Consensus        43 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  119 (325)
                      ++.+++|+|.....        .++.|..     +..|.+|++....                      ....+..   .
T Consensus        65 ~v~~v~fsP~~~g~--------~lasgs~-----Dg~i~iWd~~~~~----------------------~~~~~~~~~~~  109 (325)
T d1pgua1          65 VVTTVKFSPIKGSQ--------YLCSGDE-----SGKVIVWGWTFDK----------------------ESNSVEVNVKS  109 (325)
T ss_dssp             CEEEEEECSSTTCC--------EEEEEET-----TSEEEEEEEEEEG----------------------GGTEEEEEEEE
T ss_pred             CEEEEEEeeCCCCC--------EEEEEeC-----CCCEEEeeecCCc----------------------ceeeeeccccc
Confidence            58899999976532        3444443     3489999885220                      0011111   1


Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEe--cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKT--VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  197 (325)
                      ....|.++|.+++|++++ ..+++++  .++.+.+|+...          ...+..+.+|...|.+++|+|+++.+++++
T Consensus       110 ~~~~~~~~v~~v~~s~~~-~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  178 (325)
T d1pgua1         110 EFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDS----------GNSLGEVSGHSQRINACHLKQSRPMRSMTV  178 (325)
T ss_dssp             EEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTT----------CCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred             ccccccCcEEEEEECCCC-CccceeeccccceEEEEeecc----------cccceeeeecccccccccccccccceEEEe
Confidence            234589999999999998 4665544  467899999876          345677889999999999999998678899


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG  277 (325)
Q Consensus       198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  277 (325)
                      +.|+.+++||....+..   ........|...|.+++|+|++..+|++|+.||.|++||+++++.   +..+.+|..++.
T Consensus       179 ~~d~~v~~~d~~~~~~~---~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~---~~~l~~~~~~v~  252 (325)
T d1pgua1         179 GDDGSVVFYQGPPFKFS---ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF---LKYIEDDQEPVQ  252 (325)
T ss_dssp             ETTTEEEEEETTTBEEE---EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE---EEECCBTTBCCC
T ss_pred             ecccccccccccccccc---eecccccCCCCccEEeeeccccceeccccccccceeeeeeccccc---cccccccccccc
Confidence            99999999998765321   122234567888999999998668999999999999999998884   788888887776


Q ss_pred             EEEeC---CCCC--ccCCCCceEEeeecce
Q 020480          278 VSILN---ASFR--LSHEDTCTCTHRHSRY  302 (325)
Q Consensus       278 ~i~~~---p~~~--~~~~~d~~~~~~~~~~  302 (325)
                      ++.|+   |+|+  ++++.|+++++|+++.
T Consensus       253 ~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~  282 (325)
T d1pgua1         253 GGIFALSWLDSQKFATVGADATIRVWDVTT  282 (325)
T ss_dssp             SCEEEEEESSSSEEEEEETTSEEEEEETTT
T ss_pred             cceeeeeccCCCEEEEEeCCCeEEEEECCC
Confidence            55555   5565  3889999999998753

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.9e-21  Score=169.75  Aligned_cols=153  Identities=16%  Similarity=0.129  Sum_probs=118.6

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc-
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ-  202 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~-  202 (325)
                      +...+++++|+|++  +||+|+.||.|++||+......    ........+.+|..+|.+++|+|++. +|++|+.|++ 
T Consensus       183 ~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~----~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~D~t~  255 (393)
T d1sq9a_         183 PSQFATSVDISERG--LIATGFNNGTVQISELSTLRPL----YNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSF  255 (393)
T ss_dssp             SCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEE----EEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTE
T ss_pred             CCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccc----cccccccccccccceEEEcccccccc-eeeeecCCCCc
Confidence            56779999999986  8999999999999999861000    00112234568999999999999998 8999998874 


Q ss_pred             --EEEEeCCCCCCCCcc-------cceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccC
Q 020480          203 --ICLWDINAAPKNKSL-------EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ  273 (325)
Q Consensus       203 --i~iwd~~~~~~~~~~-------~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~  273 (325)
                        |++||++.+.....+       .....+.+|...|++++|+|++ .+|+||+.|++|+|||++++++   +.++.+|.
T Consensus       256 ~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~-~~l~S~s~D~~v~vWd~~~g~~---~~~l~gH~  331 (393)
T d1sq9a_         256 GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKER---ITTLNMHC  331 (393)
T ss_dssp             EEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEE---EEEEECCG
T ss_pred             ceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCC-CeeEEECCCCEEEEEECCCCCE---EEEECCcC
Confidence              999999876421111       1223345899999999999997 6999999999999999999884   89999998


Q ss_pred             CCee----EEEeCCCCCc
Q 020480          274 SEVG----VSILNASFRL  287 (325)
Q Consensus       274 ~~v~----~i~~~p~~~~  287 (325)
                      ..|.    .++|+|++..
T Consensus       332 ~~v~~~~~~~~~~~~~~~  349 (393)
T d1sq9a_         332 DDIEIEEDILAVDEHGDS  349 (393)
T ss_dssp             GGCSSGGGCCCBCTTSCB
T ss_pred             CcccCCccEEEECCCCCE
Confidence            8775    5889998875

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.87  E-value=4.7e-21  Score=161.50  Aligned_cols=220  Identities=10%  Similarity=0.035  Sum_probs=155.8

Q ss_pred             HHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCC
Q 020480           31 LYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFG  110 (325)
Q Consensus        31 ~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (325)
                      +.+.+..|...  +.+++|+|++.          .++.|+.     +..|++|++.                        
T Consensus         4 ~~~~~~GH~~~--V~~l~~s~dg~----------~l~s~s~-----Dg~v~vWd~~------------------------   42 (299)
T d1nr0a2           4 IDQVRYGHNKA--ITALSSSADGK----------TLFSADA-----EGHINSWDIS------------------------   42 (299)
T ss_dssp             EEEEECCCSSC--EEEEEECTTSS----------EEEEEET-----TSCEEEEETT------------------------
T ss_pred             cceEcCCCCCC--cEEEEECCCCC----------EEEEEcC-----CCeEEEEECC------------------------
Confidence            34556677654  89999999874          4555543     3478888652                        


Q ss_pred             CCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC-----------------CCCCC-----
Q 020480          111 CANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP-----------------LDGAC-----  168 (325)
Q Consensus       111 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~-----------------~~~~~-----  168 (325)
                        .++........|...|++++|+|++ . +++++.|+.+++|+.........                 ..+..     
T Consensus        43 --~~~~~~~~~~~h~~~v~~v~~~~~g-~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~  118 (299)
T d1nr0a2          43 --TGISNRVFPDVHATMITGIKTTSKG-D-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC  118 (299)
T ss_dssp             --TCCEEECSSCSCSSCEEEEEECTTS-C-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE
T ss_pred             --CCcEEEEEcCCCCCcEEEEEeeccc-e-eecccceeeEEEeccCCccccccccccccccccccccccccccccccccc
Confidence              1222211123588999999999988 4 55667899999999765321110                 00000     


Q ss_pred             -CCcE-------EEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCC
Q 020480          169 -SPDL-------RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE  240 (325)
Q Consensus       169 -~~~~-------~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  240 (325)
                       ..+.       ........+.+++|+|++. ++++|+.||.|++||++....     .......|...|.+++|+|++ 
T Consensus       119 ~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~~~d~~~~~~-----~~~~~~~~~~~i~~~~~~~~~-  191 (299)
T d1nr0a2         119 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASV-----SEVKTIVHPAEITSVAFSNNG-  191 (299)
T ss_dssp             SSEEEEEETTEEEEEECSSCEEEEEECTTSC-EEEEEETTSEEEEEEEETTEE-----EEEEEEECSSCEEEEEECTTS-
T ss_pred             ccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-----ccccccccccccccccccccc-
Confidence             0000       0011334578899999988 899999999999999986521     122345688999999999987 


Q ss_pred             cEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       241 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      .++++++.|+.|++||+.+.........+.+|..+|++++|+|++.+  +++.|+.+++|+++.
T Consensus       192 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~  255 (299)
T d1nr0a2         192 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK  255 (299)
T ss_dssp             SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCC
Confidence            68999999999999999887643345566789999999999999985  788999999998754

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.1e-20  Score=158.95  Aligned_cols=160  Identities=22%  Similarity=0.270  Sum_probs=143.4

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ..+|.++|++++|+|++ .+||+|+.||+|+|||+.+          .+.+.++.+|...|.+++|+|++. +++++..+
T Consensus        13 L~GH~~~I~~l~~sp~~-~~l~s~s~Dg~i~iWd~~~----------~~~~~~~~~h~~~V~~~~~~~~~~-~~~~~~~~   80 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYET----------GDFERTLKGHTDSVQDISFDHSGK-LLASCSAD   80 (317)
T ss_dssp             EECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTT----------CCCCEEECCCSSCEEEEEECTTSS-EEEEEETT
T ss_pred             EcCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCC----------CCEEEEEeCCCCcEEEEeeecccc-cccccccc
Confidence            46899999999999998 7999999999999999987          456788999999999999999998 89999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      +.+.+|+....      .....+..|...+.++.|+|++ ..+++++.|+.+++||++++.   .+..+.+|...+.+++
T Consensus        81 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  150 (317)
T d1vyhc1          81 MTIKLWDFQGF------ECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGY---CVKTFTGHREWVRMVR  150 (317)
T ss_dssp             SCCCEEETTSS------CEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEE
T ss_pred             ccccccccccc------ccccccccccccceeeeccCCC-ceEEeeccCcceeEeecccce---eeeEEccCCCcceeee
Confidence            99999998876      3455677889999999999987 688999999999999999987   4888889999999999


Q ss_pred             eCCCCCc--cCCCCceEEeeecce
Q 020480          281 LNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       281 ~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      |+|++.+  +++.|+.+++|+.+.
T Consensus       151 ~~~~~~~l~~~~~d~~v~~~~~~~  174 (317)
T d1vyhc1         151 PNQDGTLIASCSNDQTVRVWVVAT  174 (317)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTT
T ss_pred             cccCCCEEEEEeCCCeEEEEeecc
Confidence            9999885  788999999998754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=5.2e-20  Score=160.44  Aligned_cols=237  Identities=16%  Similarity=0.185  Sum_probs=160.8

Q ss_pred             HHHHhhhHhcChhHHHHh--h--hcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCC
Q 020480           18 NEEYKIWKKNTPFLYDLV--I--THALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE   93 (325)
Q Consensus        18 ~~~~~iw~~~~~~~y~~~--~--~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~   93 (325)
                      +..+.+|+...+..++.-  .  .|+  -++.+++|+|++.          .++.|+      ++.|.+|++.-.  ...
T Consensus        37 ~~~~~~~~~~~~~~~~~~l~~~~~H~--~~V~~l~fs~dg~----------~lasg~------d~~i~iW~~~~~--~~~   96 (388)
T d1erja_          37 NDYYILYNPALPREIDVELHKSLDHT--SVVCCVKFSNDGE----------YLATGC------NKTTQVYRVSDG--SLV   96 (388)
T ss_dssp             SSCEEEECTTSCCCEEEEEEEEEECS--SCCCEEEECTTSS----------EEEEEC------BSCEEEEETTTC--CEE
T ss_pred             CCcEEEeCCCCCcceeeeeEeeCCCC--CcEEEEEECCCCC----------EEEEEe------CCeEEEEEeccc--ceE
Confidence            344556766555443221  1  244  3588999999874          455543      236888875311  100


Q ss_pred             cccCCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE
Q 020480           94 NDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR  173 (325)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~  173 (325)
                      ..........       .....+.......|...|++++|+|++ ++|++|+.||.|++|+...          ...+..
T Consensus        97 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~V~~l~~s~~~-~~l~s~~~dg~v~i~~~~~----------~~~~~~  158 (388)
T d1erja_          97 ARLSDDSAAN-------KDPENLNTSSSPSSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIEN----------RKIVMI  158 (388)
T ss_dssp             EEECC------------------------CCCCBEEEEEECTTS-SEEEEEETTSCEEEEETTT----------TEEEEE
T ss_pred             eeeccccccc-------ccccccccccccCCCCCEEEEEECCCC-Ccceecccccccccccccc----------cccccc
Confidence            0000000000       001122233345688999999999988 7999999999999999887          345677


Q ss_pred             EecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEE
Q 020480          174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL  253 (325)
Q Consensus       174 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~  253 (325)
                      +.+|...|.+++|++++. .+++++.++.+++||.+..      ........+ .....+.+++....+|++|+.||.|+
T Consensus       159 ~~~h~~~v~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~  230 (388)
T d1erja_         159 LQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTG------QCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVR  230 (388)
T ss_dssp             ECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTT------EEEEEEECS-SCEEEEEECSTTCCEEEEEETTSCEE
T ss_pred             cccccccccccccccccc-cccccccceeeeeeecccc------ccccccccc-cccccccccCCCCCeEEEEcCCCeEE
Confidence            889999999999999988 8999999999999999875      334444444 44556666665558999999999999


Q ss_pred             EEEccCCCCCCCeeE-------eeccCCCeeEEEeCCCCCc--cCCCCceEEeeeccee
Q 020480          254 IWDLRTPSVSKPVQS-------VVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYL  303 (325)
Q Consensus       254 iwd~~~~~~~~~~~~-------~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~  303 (325)
                      +||++++..   +..       ..+|..+|.+++|+|++.+  +++.|+.+++|+++..
T Consensus       231 i~~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~  286 (388)
T d1erja_         231 VWDSETGFL---VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  286 (388)
T ss_dssp             EEETTTCCE---EEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             EeecccCcc---ceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCC
Confidence            999998763   333       2468899999999999984  7889999999987543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=2.8e-20  Score=163.38  Aligned_cols=173  Identities=13%  Similarity=0.124  Sum_probs=125.7

Q ss_pred             cCCCeeEEEecCCC----CcEEEEEecCCeEEEEeCCCCCCCCC-CCCCCCCcEE-------EecCCCceEEEEecCCCC
Q 020480          124 HDGEVNRARYMPQN----PFLIATKTVSAEVYVFDYSKHPSKPP-LDGACSPDLR-------LRGHSTEGYGLSWSKFKE  191 (325)
Q Consensus       124 h~~~v~~v~~~~~~----~~~la~g~~dg~v~vwd~~~~~~~~~-~~~~~~~~~~-------~~~h~~~v~~l~~~p~~~  191 (325)
                      +...+..++|.++.    ..++++++.||.+++|++........ ..........       ...+...+.+++|+|++ 
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-  196 (393)
T d1sq9a_         118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-  196 (393)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-
T ss_pred             CCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-
Confidence            45567777787753    26789999999999999854211000 0000111111       12345668899999986 


Q ss_pred             CeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCc---EEEEEccCCCCCCCeeE
Q 020480          192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY---LLIWDLRTPSVSKPVQS  268 (325)
Q Consensus       192 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~  268 (325)
                       +|++|+.||+|+|||+.+++....+.....+.+|...|++++|+|++ .+|++|+.|++   |++||++++..   +..
T Consensus       197 -~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg-~~l~sgs~D~t~~~i~lwd~~~g~~---~~~  271 (393)
T d1sq9a_         197 -LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGER---IGS  271 (393)
T ss_dssp             -EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCE---EEE
T ss_pred             -EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc-ceeeeecCCCCcceeeeccccccee---eee
Confidence             79999999999999998874433233344566799999999999997 69999999875   99999998763   333


Q ss_pred             e-------------eccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          269 V-------------VAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       269 ~-------------~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      +             .+|...|++++|+|++++  +++.|+++++|++..
T Consensus       272 l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             ECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             eccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence            3             479999999999999985  899999999999754

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.1e-19  Score=151.16  Aligned_cols=241  Identities=20%  Similarity=0.213  Sum_probs=165.0

Q ss_pred             hhhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCC----
Q 020480           15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLD----   90 (325)
Q Consensus        15 ~~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~----   90 (325)
                      ...|.++|||+.+...+...+..|...  +++++|.+.            .++.|+..     ..+.++++.....    
T Consensus        31 gs~Dg~i~vWd~~~~~~~~~l~~H~~~--V~~v~~~~~------------~l~s~s~D-----~~i~~~~~~~~~~~~~~   91 (293)
T d1p22a2          31 GLRDNTIKIWDKNTLECKRILTGHTGS--VLCLQYDER------------VIITGSSD-----STVRVWDVNTGEMLNTL   91 (293)
T ss_dssp             EESSSCEEEEESSSCCEEEEECCCSSC--EEEEECCSS------------EEEEEETT-----SCEEEEESSSCCEEEEE
T ss_pred             EeCCCeEEEEECCCCcEEEEEecCCCC--Eeeeecccc------------eeeccccc-----ccccccccccccccccc
Confidence            346788999999988887777777655  778887432            34444432     2455554321100    


Q ss_pred             ---CCCcc-cCC------CCcccCCCCCCCCC--CCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCC
Q 020480           91 ---DSEND-ARH------YDDDRSDFGGFGCA--NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKH  158 (325)
Q Consensus        91 ---~~~~~-~~~------~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~  158 (325)
                         ..... ...      .....+....|...  ...........|...|..+.+.+   ..+++++.|+.|++|+... 
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~-  167 (293)
T d1p22a2          92 IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTST-  167 (293)
T ss_dssp             CCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTT-
T ss_pred             cccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecc---cccccccCCCceeeecCCC-
Confidence               00000 000      00001111111111  12223334456888888888876   4678889999999999987 


Q ss_pred             CCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecC
Q 020480          159 PSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR  238 (325)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  238 (325)
                               .+.+..+.++...+..+.+++  . .+++++.||.|++||++..      ..+..+.++...+..+.  ++
T Consensus       168 ---------~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~v~~~~--~~  227 (293)
T d1p22a2         168 ---------CEFVRTLNGHKRGIACLQYRD--R-LVVSGSSDNTIRLWDIECG------ACLRVLEGHEELVRCIR--FD  227 (293)
T ss_dssp             ---------CCEEEEEECCSSCEEEEEEET--T-EEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEE--CC
T ss_pred             ---------CcEEEEEcccccccccccCCC--C-eEEEecCCCEEEEEecccc------eeeeeecccceeeeecc--cc
Confidence                     455778889999999988864  3 7999999999999999876      45677788888887654  44


Q ss_pred             CCcEEEEEecCCcEEEEEccCCCC------CCCeeEeeccCCCeeEEEeCCCCCccCCCCceEEeee
Q 020480          239 HEYLFGSVGDDQYLLIWDLRTPSV------SKPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRH  299 (325)
Q Consensus       239 ~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~  299 (325)
                      + .+|++|+.||.|++||++....      ...+..+.+|.+.|++++|++...++++.|+++++||
T Consensus       228 ~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         228 N-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             S-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred             c-eEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence            4 6899999999999999875322      1246777899999999999877666999999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1.4e-19  Score=151.52  Aligned_cols=160  Identities=14%  Similarity=0.189  Sum_probs=123.8

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecC-CeEEEEeCCCCCCCCCCCCCCCCcEEE-ecCCCceEEEEecCCCCCeEEEE
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVS-AEVYVFDYSKHPSKPPLDGACSPDLRL-RGHSTEGYGLSWSKFKEGHLLSG  197 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~  197 (325)
                      ..+.+...+.  ++++.+ ..+++++.+ +.|++|++..          ......+ ..|...+++++|+|++. +|++|
T Consensus       115 ~~~~~~~~~~--~~~~~~-~~~~v~~~~~~~v~~~~~~~----------~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g  180 (287)
T d1pgua2         115 KSVRLNSPGS--AVSLSQ-NYVAVGLEEGNTIQVFKLSD----------LEVSFDLKTPLRAKPSYISISPSET-YIAAG  180 (287)
T ss_dssp             EEEECSSCEE--EEEECS-SEEEEEETTTSCEEEEETTE----------EEEEEECSSCCSSCEEEEEECTTSS-EEEEE
T ss_pred             eeccccceee--eeeccC-cceeeeccccceeeeeeccc----------cceeeeeeeccCCceeEEEeccCcc-ccccc
Confidence            3444444444  455555 466666665 5799999875          1222222 35778899999999998 89999


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCC---------CcEEEEEecCCcEEEEEccCCCCCCCeeE
Q 020480          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH---------EYLFGSVGDDQYLLIWDLRTPSVSKPVQS  268 (325)
Q Consensus       198 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~---------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  268 (325)
                      +.||.|++||+..+..     ....+.+|...|.+++|+|.+         ..++++|+.|++|++||++....  .+..
T Consensus       181 ~~dg~i~i~d~~~~~~-----~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~--~~~~  253 (287)
T d1pgua2         181 DVMGKILLYDLQSREV-----KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK--IIKA  253 (287)
T ss_dssp             ETTSCEEEEETTTTEE-----EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC--CEEE
T ss_pred             cccccccceeeccccc-----ccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe--EEEE
Confidence            9999999999987631     223467899999999999853         35899999999999999987553  4777


Q ss_pred             eeccCCCeeEEEeCCCCCc-cCCCCceEEeeec
Q 020480          269 VVAHQSEVGVSILNASFRL-SHEDTCTCTHRHS  300 (325)
Q Consensus       269 ~~~h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~  300 (325)
                      +.+|...|++++|+|++.+ +++.|+++++|++
T Consensus       254 ~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         254 LNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             TTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             eCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            7899999999999999875 8899999999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=2e-18  Score=146.27  Aligned_cols=211  Identities=9%  Similarity=0.029  Sum_probs=133.5

Q ss_pred             hcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcccCCCCcccCCCCCCCCCCCce
Q 020480           37 THALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKV  116 (325)
Q Consensus        37 ~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (325)
                      .|...  +.+++|+|++.          .|+.|+.     ++.+.+|++...                        ....
T Consensus         9 ~h~d~--I~~l~fsp~~~----------~L~s~s~-----Dg~v~iwd~~~~------------------------~~~~   47 (342)
T d1yfqa_           9 APKDY--ISDIKIIPSKS----------LLLITSW-----DGSLTVYKFDIQ------------------------AKNV   47 (342)
T ss_dssp             CCSSC--EEEEEEEGGGT----------EEEEEET-----TSEEEEEEEETT------------------------TTEE
T ss_pred             CCCCC--EEEEEEeCCCC----------EEEEEEC-----CCeEEEEEccCC------------------------Ccce
Confidence            34444  78999999874          5666654     358999998622                        2344


Q ss_pred             EEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC-ceEEEEecCCCCCeEE
Q 020480          117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST-EGYGLSWSKFKEGHLL  195 (325)
Q Consensus       117 ~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~p~~~~~l~  195 (325)
                      .+....+|.++|.+++|+|++..+|++|+.||.|++|+...          .........+.. ......+.+... .++
T Consensus        48 ~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  116 (342)
T d1yfqa_          48 DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG----------SPSFQALTNNEANLGICRICKYGDD-KLI  116 (342)
T ss_dssp             EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS----------SSSEEECBSCCCCSCEEEEEEETTT-EEE
T ss_pred             EEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccc----------ccccccccccccccccccccccccc-ccc
Confidence            55566789999999999998768999999999999999986          222333333333 334444555555 899


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceEeeecC--CccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCC--------
Q 020480          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVH--EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP--------  265 (325)
Q Consensus       196 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------  265 (325)
                      +++.++.+++||++.......  .......+  ........+.+.+ ..+++++.|+.|++||++.......        
T Consensus       117 ~~~~~~~~~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~  193 (342)
T d1yfqa_         117 AASWDGLIEVIDPRNYGDGVI--AVKNLNSNNTKVKNKIFTMDTNS-SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK  193 (342)
T ss_dssp             EEETTSEEEEECHHHHTTBCE--EEEESCSSSSSSCCCEEEEEECS-SEEEEEESTTEEEEEESSCCTTCCCEEEECSCS
T ss_pred             ccccccccceeecccccccee--eecccccccccceeeeeeeeccC-CceeeecCCCcEEEEecccCcccceeeeecccc
Confidence            999999999999875432110  01111111  1122223333433 3455555555555555543321100        


Q ss_pred             --------------------------------------------------eeEeeccCCCeeEEEeCCCCCc--cCCCCc
Q 020480          266 --------------------------------------------------VQSVVAHQSEVGVSILNASFRL--SHEDTC  293 (325)
Q Consensus       266 --------------------------------------------------~~~~~~h~~~v~~i~~~p~~~~--~~~~d~  293 (325)
                                                                        ......|...|++|+|+|++.+  +|+.|+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg  273 (342)
T d1yfqa_         194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG  273 (342)
T ss_dssp             SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred             cceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCC
Confidence                                                              0001234557899999999885  899999


Q ss_pred             eEEeeecce
Q 020480          294 TCTHRHSRY  302 (325)
Q Consensus       294 ~~~~~~~~~  302 (325)
                      ++++|++..
T Consensus       274 ~v~vWD~~~  282 (342)
T d1yfqa_         274 IISCWNLQT  282 (342)
T ss_dssp             CEEEEETTT
T ss_pred             EEEEEECCC
Confidence            999998753

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=2.7e-18  Score=146.56  Aligned_cols=231  Identities=15%  Similarity=0.151  Sum_probs=164.6

Q ss_pred             hhHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCcc
Q 020480           16 LINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEND   95 (325)
Q Consensus        16 ~~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~   95 (325)
                      ..|.++|||+..+..+...+..|..  ++.+++|.|+.           .++.|..     +..+.++++..        
T Consensus        30 s~Dg~i~vWd~~~~~~~~~l~~H~~--~V~~l~~s~~~-----------~l~s~s~-----D~~i~iw~~~~--------   83 (355)
T d1nexb2          30 ADDKMIRVYDSINKKFLLQLSGHDG--GVWALKYAHGG-----------ILVSGST-----DRTVRVWDIKK--------   83 (355)
T ss_dssp             ETTTEEEEEETTTTEEEEEEECCSS--CEEEEEEETTT-----------EEEEEET-----TCCEEEEETTT--------
T ss_pred             eCCCeEEEEECCCCcEEEEEECCCC--CEEEEEEcCCC-----------EEEEEec-----ccccccccccc--------
Confidence            4578899999988887777777764  48999998853           3555543     34677776521        


Q ss_pred             cCCCCcccCCCCCCCCCCCceEE-EEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC-----------
Q 020480           96 ARHYDDDRSDFGGFGCANGKVQI-IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP-----------  163 (325)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~-----------  163 (325)
                                        ..... .....+...+....+.+++ ..+++++.|+.|++|++........           
T Consensus        84 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  144 (355)
T d1nexb2          84 ------------------GCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF  144 (355)
T ss_dssp             ------------------TEEEEEECCCSSCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEE
T ss_pred             ------------------ccccccccccccccccccccccccc-ceeeeecCCCcEEEEEccCCceeccccccceeccce
Confidence                              11111 1111233344556677766 7899999999999999876321110           


Q ss_pred             --CCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCc
Q 020480          164 --LDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEY  241 (325)
Q Consensus       164 --~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  241 (325)
                        .............|...+....  +++. +++++..|+.|++||++.+      ..+....++...+.++.|+|.+ .
T Consensus       145 ~~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~~~~~~~d~~i~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~-~  214 (355)
T d1nexb2         145 HTPEENPYFVGVLRGHMASVRTVS--GHGN-IVVSGSYDNTLIVWDVAQM------KCLYILSGHTDRIYSTIYDHER-K  214 (355)
T ss_dssp             SCTTTCTTEEEEEECCSSCEEEEE--EETT-EEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEEETTT-T
T ss_pred             eccccccceeeeeeeccccccccc--cccc-eeeeecccceeeeeecccc------cceeeeeccccccccccccccc-e
Confidence              0001111223334555555444  4455 8999999999999999876      4566777888899999999987 6


Q ss_pred             EEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCccCCCCceEEeeecceee
Q 020480          242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHSRYLL  304 (325)
Q Consensus       242 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~~~~~  304 (325)
                      .+++++.|+.|++||++++.   .+..+.+|...|.+++|+++..++++.|+++++|+++...
T Consensus       215 ~~~~~~~d~~i~i~d~~~~~---~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~  274 (355)
T d1nexb2         215 RCISASMDTTIRIWDLENGE---LMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS  274 (355)
T ss_dssp             EEEEEETTSCEEEEETTTCC---EEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCC
T ss_pred             eeecccccceEEeeeccccc---cccccccccccccccccccceeeeeecccccccccccccc
Confidence            89999999999999999887   4888899999999999998766799999999999986543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.3e-18  Score=146.25  Aligned_cols=161  Identities=18%  Similarity=0.215  Sum_probs=116.0

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ..+|.+.|.+ +++++| ++||+|+.||.|+|||+.+          .+++.++.+|...|.+++|+|+   +|++|+.|
T Consensus        12 l~GH~~~V~s-~~~~~g-~~l~sgs~Dg~i~vWd~~~----------~~~~~~~~~h~~~V~~v~~~~~---~l~s~s~D   76 (342)
T d2ovrb2          12 LKGHDDHVIT-CLQFCG-NRIVSGSDDNTLKVWSAVT----------GKCLRTLVGHTGGVWSSQMRDN---IIISGSTD   76 (342)
T ss_dssp             EECSTTSCEE-EEEEET-TEEEEEETTSCEEEEETTT----------CCEEEECCCCSSCEEEEEEETT---EEEEEETT
T ss_pred             ECCcCCceEE-EEEECC-CEEEEEeCCCeEEEEECCC----------CCEEEEEeCCCCCEEEEEeCCC---ccccceec
Confidence            4589998854 355566 6999999999999999987          3456677778888888877653   56666666


Q ss_pred             CcEEEEeCCCCCCC------------------------------------------------------------------
Q 020480          201 AQICLWDINAAPKN------------------------------------------------------------------  214 (325)
Q Consensus       201 g~i~iwd~~~~~~~------------------------------------------------------------------  214 (325)
                      +.+++|+.......                                                                  
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  156 (342)
T d2ovrb2          77 RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD  156 (342)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETT
T ss_pred             ccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCC
Confidence            66655554321000                                                                  


Q ss_pred             ------------------------------------------------CcccceEeeecCCccEEEEEeecCCCcEEEEE
Q 020480          215 ------------------------------------------------KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV  246 (325)
Q Consensus       215 ------------------------------------------------~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~  246 (325)
                                                                      ....++..+.+|...+.++++++   .+|++|
T Consensus       157 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~  233 (342)
T d2ovrb2         157 FMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NILVSG  233 (342)
T ss_dssp             SCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET---TEEEEE
T ss_pred             CeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC---CEEEEE
Confidence                                                            00023455666777888887764   489999


Q ss_pred             ecCCcEEEEEccCCCCCCCeeEe---eccCCCeeEEEeCCCCCccCCCCceEEeeecce
Q 020480          247 GDDQYLLIWDLRTPSVSKPVQSV---VAHQSEVGVSILNASFRLSHEDTCTCTHRHSRY  302 (325)
Q Consensus       247 ~~dg~i~iwd~~~~~~~~~~~~~---~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~~~  302 (325)
                      +.||.|++||+...+.   ...+   ..|...+.++.++++..++++.|+++++|+++.
T Consensus       234 s~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~t  289 (342)
T d2ovrb2         234 NADSTVKIWDIKTGQC---LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT  289 (342)
T ss_dssp             ETTSCEEEEETTTCCE---EEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred             cCCCEEEEEecccccc---cccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCC
Confidence            9999999999988774   4444   346778889999887767999999999999753

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=2.3e-18  Score=147.05  Aligned_cols=153  Identities=15%  Similarity=0.209  Sum_probs=122.0

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ...+...+.++.|+|.+ ..+++++.|+.|++|+...          ...+..+.+|...|.+++|++  . +|++|+.|
T Consensus       197 ~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~----------~~~~~~~~~h~~~v~~~~~~~--~-~l~~~~~d  262 (355)
T d1nexb2         197 LSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLEN----------GELMYTLQGHTALVGLLRLSD--K-FLVSAAAD  262 (355)
T ss_dssp             ECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTT----------CCEEEEECCCSSCCCEEEECS--S-EEEEECTT
T ss_pred             eeccccccccccccccc-eeeecccccceEEeeeccc----------ccccccccccccccccccccc--c-eeeeeecc
Confidence            34577889999999988 6999999999999999987          455778899999999999975  3 89999999


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeecCCccEEEEE-eecCCCcEEEEEecCCcEEEEEccCCCCCCCee-EeeccCCCeeE
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVA-WHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ-SVVAHQSEVGV  278 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~-~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~h~~~v~~  278 (325)
                      |.|++||++..        ...+..|...+.++. +++++ .++++| .||.|++||+++++.   +. .+.+|..+|++
T Consensus       263 g~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~l~~g-~d~~i~vwd~~tg~~---~~~~~~~~~~~V~~  329 (355)
T d1nexb2         263 GSIRGWDANDY--------SRKFSYHHTNLSAITTFYVSD-NILVSG-SENQFNIYNLRSGKL---VHANILKDADQIWS  329 (355)
T ss_dssp             SEEEEEETTTC--------CEEEEEECTTCCCCCEEEECS-SEEEEE-ETTEEEEEETTTCCB---CCSCTTTTCSEEEE
T ss_pred             ccccccccccc--------ceecccccCCceEEEEEcCCC-CEEEEE-eCCEEEEEECCCCCE---EEEEecCCCCCEEE
Confidence            99999999865        233455666666665 45554 566555 589999999999884   43 45779999999


Q ss_pred             EEeCCCCCc-cCCCCceEEeeec
Q 020480          279 SILNASFRL-SHEDTCTCTHRHS  300 (325)
Q Consensus       279 i~~~p~~~~-~~~~d~~~~~~~~  300 (325)
                      ++|+|+..+ +++.|+++.+|..
T Consensus       330 v~~~~~~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         330 VNFKGKTLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EEEETTEEEEEEESSSCEEEEEE
T ss_pred             EEEcCCeEEEEEECCCcEEEEEE
Confidence            999998655 6788998877643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.6e-17  Score=140.97  Aligned_cols=152  Identities=17%  Similarity=0.269  Sum_probs=119.1

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      .+|...+..+.+  ++ ..+++|+.||.|++||++.          ...+..+.+|...+.++++++  . +|++|+.||
T Consensus       174 ~~~~~~~~~~~~--~~-~~l~s~~~dg~i~~~d~~~----------~~~~~~~~~~~~~v~~~~~~~--~-~l~s~s~d~  237 (342)
T d2ovrb2         174 QGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVET----------GNCIHTLTGHQSLTSGMELKD--N-ILVSGNADS  237 (342)
T ss_dssp             CCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTT----------CCEEEEECCCCSCEEEEEEET--T-EEEEEETTS
T ss_pred             cCcccccccccC--CC-CEEEEEeCCCeEEEeeccc----------ceeeeEecccccceeEEecCC--C-EEEEEcCCC
Confidence            346666655555  44 6899999999999999987          455778889999999998875  3 899999999


Q ss_pred             cEEEEeCCCCCCCCcccceEee---ecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-----eccC
Q 020480          202 QICLWDINAAPKNKSLEAMQIF---KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-----VAHQ  273 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~h~  273 (325)
                      .|++||+.....      ...+   ..|...+.++++++   .++++|+.||+|++||+++++.   +..+     .+|.
T Consensus       238 ~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~---i~~~~~~~~~~~~  305 (342)
T d2ovrb2         238 TVKIWDIKTGQC------LQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEF---IRNLVTLESGGSG  305 (342)
T ss_dssp             CEEEEETTTCCE------EEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCE---EEEEEECTTGGGT
T ss_pred             EEEEEecccccc------cccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCE---EEEEecccCCCCC
Confidence            999999987632      3333   34666777777764   5899999999999999999884   5555     3578


Q ss_pred             CCeeEEEeCCCCCc--cCCCCce----EEeeecc
Q 020480          274 SEVGVSILNASFRL--SHEDTCT----CTHRHSR  301 (325)
Q Consensus       274 ~~v~~i~~~p~~~~--~~~~d~~----~~~~~~~  301 (325)
                      ..|++++|+|++.+  +|+.||+    +++||..
T Consensus       306 ~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         306 GVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             CEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            88999999999986  6677765    6777654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.3e-17  Score=136.76  Aligned_cols=159  Identities=16%  Similarity=0.246  Sum_probs=117.0

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      -.|...|+|++|  ++ ++||+|+.||+|+|||+.+          .+.+.++.+|.+.|++++|+  +. +|++|+.|+
T Consensus        12 ~~~~~~V~c~~~--d~-~~l~sgs~Dg~i~vWd~~~----------~~~~~~l~~H~~~V~~v~~~--~~-~l~s~s~D~   75 (293)
T d1p22a2          12 SETSKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNT----------LECKRILTGHTGSVLCLQYD--ER-VIITGSSDS   75 (293)
T ss_dssp             CSSCCCEEEEEC--CS-SEEEEEESSSCEEEEESSS----------CCEEEEECCCSSCEEEEECC--SS-EEEEEETTS
T ss_pred             CCCCCCEEEEEE--cC-CEEEEEeCCCeEEEEECCC----------CcEEEEEecCCCCEeeeecc--cc-eeecccccc
Confidence            357888998776  45 6999999999999999987          45678899999999999985  44 899999999


Q ss_pred             cEEEEeCCCCCCCC-------------------------------------cccceEeeecCCccEEEEEeecCCCcEEE
Q 020480          202 QICLWDINAAPKNK-------------------------------------SLEAMQIFKVHEGVVEDVAWHLRHEYLFG  244 (325)
Q Consensus       202 ~i~iwd~~~~~~~~-------------------------------------~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  244 (325)
                      .|++|++..+....                                     .......+..|...+..+.+.+   ..++
T Consensus        76 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~  152 (293)
T d1p22a2          76 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIV  152 (293)
T ss_dssp             CEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEEE
T ss_pred             cccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecc---cccc
Confidence            99999987763110                                     0001222344556666666553   3566


Q ss_pred             EEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCccCCCCceEEeeecce
Q 020480          245 SVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRLSHEDTCTCTHRHSRY  302 (325)
Q Consensus       245 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~d~~~~~~~~~~  302 (325)
                      +++.|+.|++||+++.+   .+..+.++...+..+.+++...++++.|+++++|+.+.
T Consensus       153 ~~s~d~~i~~~d~~~~~---~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~  207 (293)
T d1p22a2         153 SASGDRTIKVWNTSTCE---FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC  207 (293)
T ss_dssp             EEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             cccCCCceeeecCCCCc---EEEEEcccccccccccCCCCeEEEecCCCEEEEEeccc
Confidence            77888888888888776   36777777777777777766555777788888877643

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=5.5e-18  Score=143.52  Aligned_cols=166  Identities=8%  Similarity=0.049  Sum_probs=116.7

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      +|...|++|+|+|++ ++||+|+.||+|+|||+...       ..........+|..+|.+++|+|++..+|++|+.||.
T Consensus         9 ~h~d~I~~l~fsp~~-~~L~s~s~Dg~v~iwd~~~~-------~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           9 APKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQ-------AKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             CCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETT-------TTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             CCCCCEEEEEEeCCC-CEEEEEECCCeEEEEEccCC-------CcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            589999999999998 79999999999999998761       0111223344799999999999987668999999999


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCc-cEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCe-eEeecc--CCCeeE
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEG-VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV-QSVVAH--QSEVGV  278 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~h--~~~v~~  278 (325)
                      |++|++.....      ......+.. ......+.+. ...+++++.++++++||++........ .....+  ......
T Consensus        81 v~~w~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  153 (342)
T d1yfqa_          81 ILKVDLIGSPS------FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKI  153 (342)
T ss_dssp             EEEECSSSSSS------EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCE
T ss_pred             eeeeecccccc------cccccccccccccccccccc-cccccccccccccceeeccccccceeeecccccccccceeee
Confidence            99999987643      233333333 3334444554 478999999999999999876531111 111112  223344


Q ss_pred             EEeCCCCC--ccCCCCceEEeeeccee
Q 020480          279 SILNASFR--LSHEDTCTCTHRHSRYL  303 (325)
Q Consensus       279 i~~~p~~~--~~~~~d~~~~~~~~~~~  303 (325)
                      +.+.+.+.  +.++.|+.+++|+++..
T Consensus       154 ~~~~~~~~~~~~~~~d~~i~~~~~~~~  180 (342)
T d1yfqa_         154 FTMDTNSSRLIVGMNNSQVQWFRLPLC  180 (342)
T ss_dssp             EEEEECSSEEEEEESTTEEEEEESSCC
T ss_pred             eeeeccCCceeeecCCCcEEEEecccC
Confidence            45555444  48888999999987543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=8.3e-18  Score=140.51  Aligned_cols=118  Identities=17%  Similarity=0.329  Sum_probs=98.5

Q ss_pred             ccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCC---------CCe
Q 020480          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK---------EGH  193 (325)
Q Consensus       123 ~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~---------~~~  193 (325)
                      .|.+.|++++|+|++ .+|++|+.||.|++||+..        +. .....+.+|...|.+++|+|.+         ..+
T Consensus       160 ~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~--------~~-~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~  229 (287)
T d1pgua2         160 PLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQS--------RE-VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL  229 (287)
T ss_dssp             CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT--------TE-EEECCSCCCSSCEEEEEECCCC------CCSCCE
T ss_pred             ccCCceeEEEeccCc-cccccccccccccceeecc--------cc-cccccccccccccceeeecccccccccccCCCCe
Confidence            477899999999998 7999999999999999986        11 1122356899999999999854         237


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEc
Q 020480          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL  257 (325)
Q Consensus       194 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~  257 (325)
                      +++|+.|+.|++||++...     ..+..+.+|...|++++|+|++  .|++++.||+|++|++
T Consensus       230 l~sgs~D~~i~iw~~~~~~-----~~~~~~~~h~~~V~~v~~~~~~--~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         230 VATGSLDTNIFIYSVKRPM-----KIIKALNAHKDGVNNLLWETPS--TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEETTSCEEEEESSCTT-----CCEEETTSSTTCEEEEEEEETT--EEEEEETTSCEEEEEE
T ss_pred             eEeecCCCeEEEEECCCCC-----eEEEEeCCCCCCeEEEEECCCC--EEEEEECCCeEEEEEE
Confidence            9999999999999997643     3466778999999999999975  5889999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.72  E-value=6.9e-17  Score=138.55  Aligned_cols=164  Identities=9%  Similarity=0.081  Sum_probs=131.1

Q ss_pred             EeccCCCeeEEEecCCCCcEEEEEecC-C-eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe
Q 020480          121 QINHDGEVNRARYMPQNPFLIATKTVS-A-EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (325)
Q Consensus       121 ~~~h~~~v~~v~~~~~~~~~la~g~~d-g-~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s  198 (325)
                      .+.|.+.|.+++|+|+| +.|++++.+ | .|++||...           .....+..|...+.+++|+|++. +|++++
T Consensus        38 ~~~~~~~v~~~~~spDg-~~l~~~~~~~g~~v~v~d~~~-----------~~~~~~~~~~~~v~~~~~spdg~-~l~~~~  104 (360)
T d1k32a3          38 KVPEPLRIRYVRRGGDT-KVAFIHGTREGDFLGIYDYRT-----------GKAEKFEENLGNVFAMGVDRNGK-FAVVAN  104 (360)
T ss_dssp             ECSCCSCEEEEEECSSS-EEEEEEEETTEEEEEEEETTT-----------CCEEECCCCCCSEEEEEECTTSS-EEEEEE
T ss_pred             EccCCCCEEEEEECCCC-CEEEEEEcCCCCEEEEEECCC-----------CcEEEeeCCCceEEeeeeccccc-ccceec
Confidence            45899999999999999 566655544 3 789999987           33566778999999999999999 899999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe----------cCCcEEEEEccCCCCCCCeeE
Q 020480          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG----------DDQYLLIWDLRTPSVSKPVQS  268 (325)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~  268 (325)
                      .++.+++|++..+      .....+..|...+.+++|+|++. +|+.++          .++.+++||+.+++    ...
T Consensus       105 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~spdg~-~la~~~~~~~~~~~~~~~~~~~v~d~~~~~----~~~  173 (360)
T d1k32a3         105 DRFEIMTVDLETG------KPTVIERSREAMITDFTISDNSR-FIAYGFPLKHGETDGYVMQAIHVYDMEGRK----IFA  173 (360)
T ss_dssp             TTSEEEEEETTTC------CEEEEEECSSSCCCCEEECTTSC-EEEEEEEECSSTTCSCCEEEEEEEETTTTE----EEE
T ss_pred             ccccccccccccc------ceeeeeecccccccchhhcccee-eeeeeccccccceeeccccceeeeccccCc----eee
Confidence            9999999999876      34666778888999999999984 665443          34569999998876    445


Q ss_pred             eeccCCCeeEEEeCCCCCc--cCCCCceEEeeecceeeeccC
Q 020480          269 VVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRYLLYKFP  308 (325)
Q Consensus       269 ~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~~~~~~~  308 (325)
                      +..+...+..++|+|+|+.  +++.++.+++|+.......++
T Consensus       174 ~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~  215 (360)
T d1k32a3         174 ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE  215 (360)
T ss_dssp             CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECC
T ss_pred             ecccccccccccccCCCCEEEEEeCCCceEcccccccceeec
Confidence            5567788899999999984  677888888888765544443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.67  E-value=1.9e-15  Score=129.33  Aligned_cols=148  Identities=11%  Similarity=0.016  Sum_probs=118.0

Q ss_pred             eEEEecC-CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC--CcEEE
Q 020480          129 NRARYMP-QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD--AQICL  205 (325)
Q Consensus       129 ~~v~~~~-~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d--g~i~i  205 (325)
                      ..-.||| +| +++|+++ .|.|++|++..           ..+..+ +|...|.+++|+|++. .|++++.+  ..|++
T Consensus         6 ~~~~fSP~dG-~~~a~~~-~g~v~v~d~~~-----------~~~~~~-~~~~~v~~~~~spDg~-~l~~~~~~~g~~v~v   70 (360)
T d1k32a3           6 FAEDFSPLDG-DLIAFVS-RGQAFIQDVSG-----------TYVLKV-PEPLRIRYVRRGGDTK-VAFIHGTREGDFLGI   70 (360)
T ss_dssp             GEEEEEECGG-GCEEEEE-TTEEEEECTTS-----------SBEEEC-SCCSCEEEEEECSSSE-EEEEEEETTEEEEEE
T ss_pred             hcccccCCCC-CEEEEEE-CCeEEEEECCC-----------CcEEEc-cCCCCEEEEEECCCCC-EEEEEEcCCCCEEEE
Confidence            3467999 67 7888865 57999999976           223333 7999999999999998 66665544  37999


Q ss_pred             EeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCC
Q 020480          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASF  285 (325)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~  285 (325)
                      ||.+.+       ....+..|...|.+++|+|++ .+|++++.++.+++|++.+.+.   ...+..|...+.+++|+|+|
T Consensus        71 ~d~~~~-------~~~~~~~~~~~v~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~spdg  139 (360)
T d1k32a3          71 YDYRTG-------KAEKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKP---TVIERSREAMITDFTISDNS  139 (360)
T ss_dssp             EETTTC-------CEEECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE---EEEEECSSSCCCCEEECTTS
T ss_pred             EECCCC-------cEEEeeCCCceEEeeeecccc-cccceeccccccccccccccce---eeeeecccccccchhhccce
Confidence            999875       245667899999999999997 6999999999999999998874   66777888999999999999


Q ss_pred             Cc------------cCCCCceEEeeecce
Q 020480          286 RL------------SHEDTCTCTHRHSRY  302 (325)
Q Consensus       286 ~~------------~~~~d~~~~~~~~~~  302 (325)
                      ++            .+..+..+++|+...
T Consensus       140 ~~la~~~~~~~~~~~~~~~~~~~v~d~~~  168 (360)
T d1k32a3         140 RFIAYGFPLKHGETDGYVMQAIHVYDMEG  168 (360)
T ss_dssp             CEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             eeeeeeccccccceeeccccceeeecccc
Confidence            84            245566777777653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.53  E-value=1.7e-13  Score=121.23  Aligned_cols=163  Identities=9%  Similarity=-0.013  Sum_probs=118.0

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe---cCCCceEEEEecCCCCCeEEE
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR---GHSTEGYGLSWSKFKEGHLLS  196 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~l~s  196 (325)
                      ..+.....+..++|+|+| +++++++.||.|++||+..        +.......+.   +|.+.+.+..|+|+|..++++
T Consensus        56 ~~~~~g~~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t--------~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs  126 (432)
T d1qksa2          56 TVLDTGYAVHISRLSASG-RYLFVIGRDGKVNMIDLWM--------KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAG  126 (432)
T ss_dssp             EEEECSSCEEEEEECTTS-CEEEEEETTSEEEEEETTS--------SSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEE
T ss_pred             EEEeCCCCeeEEEECCCC-CEEEEEcCCCCEEEEEeeC--------CCceEEEEEecCCCCCCeEEecccCCCCCEEEEE
Confidence            344444579999999999 7889999999999999976        2222233332   455566777889999955688


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceEeee-----------cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCC
Q 020480          197 GSDDAQICLWDINAAPKNKSLEAMQIFK-----------VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP  265 (325)
Q Consensus       197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~-----------~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  265 (325)
                      ++.++.|++||..++.      ++..+.           .+......+.++|++..++++...++.|.+||....+.   
T Consensus       127 ~~~~~~v~i~d~~t~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~---  197 (432)
T d1qksa2         127 AYWPPQYVIMDGETLE------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN---  197 (432)
T ss_dssp             EEETTEEEEEETTTCC------EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE---
T ss_pred             cCCCCeEEEEeCcccc------ceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc---
Confidence            9999999999998773      233322           24456778899999877778888999999999987663   


Q ss_pred             eeEe-eccCCCeeEEEeCCCCCc---cCCCCceEEeeec
Q 020480          266 VQSV-VAHQSEVGVSILNASFRL---SHEDTCTCTHRHS  300 (325)
Q Consensus       266 ~~~~-~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~  300 (325)
                      .... ..+...+..++|+|+|++   ....+..+.+++.
T Consensus       198 ~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~  236 (432)
T d1qksa2         198 LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDT  236 (432)
T ss_dssp             EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred             ceEEEEcccCccccceECCCCCEEEEeccccceEEEeec
Confidence            2222 235567899999999984   3334556666554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.48  E-value=3.9e-12  Score=105.58  Aligned_cols=226  Identities=8%  Similarity=0.043  Sum_probs=149.5

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.+|++|+.++..+...+   ...-....++|+|++.          .++++..    ..+.|.++++.          
T Consensus        10 ~~~~v~v~D~~t~~~~~~i---~~g~~p~~va~spdG~----------~l~v~~~----~~~~i~v~d~~----------   62 (301)
T d1l0qa2          10 ESDNISVIDVTSNKVTATI---PVGSNPMGAVISPDGT----------KVYVANA----HSNDVSIIDTA----------   62 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEE---ECSSSEEEEEECTTSS----------EEEEEEG----GGTEEEEEETT----------
T ss_pred             CCCEEEEEECCCCeEEEEE---ECCCCceEEEEeCCCC----------EEEEEEC----CCCEEEEEECC----------
Confidence            3557889998887544333   3333457899999875          3433332    22467777542          


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG  176 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  176 (325)
                                      .  .+.+..+.....+..+.|++++..+++++..++.+.+|+...          ......+. 
T Consensus        63 ----------------t--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~-  113 (301)
T d1l0qa2          63 ----------------T--NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTS----------NTVAGTVK-  113 (301)
T ss_dssp             ----------------T--TEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT----------TEEEEEEE-
T ss_pred             ----------------C--Cceeeeeeccccccccccccccccccccccccceeeeccccc----------ceeeeecc-
Confidence                            1  123344555556789999999977777888889999999876          23344444 


Q ss_pred             CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcc-----------------------------------cceE
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL-----------------------------------EAMQ  221 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----------------------------------~~~~  221 (325)
                      +......+.|+|++..+++++..++.+.+|+.........+                                   ....
T Consensus       114 ~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (301)
T d1l0qa2         114 TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI  193 (301)
T ss_dssp             CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeee
Confidence            44567899999999966677778899999998765311000                                   0000


Q ss_pred             eeecCCccEEEEEeecCCCcEEEEEe--cCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc---cCCCCceEE
Q 020480          222 IFKVHEGVVEDVAWHLRHEYLFGSVG--DDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL---SHEDTCTCT  296 (325)
Q Consensus       222 ~~~~~~~~v~~v~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~---~~~~d~~~~  296 (325)
                      ........+..+++++++..+++++.  .++.|++||+.+++.   +..+.. ...+.+++|+|+|+.   +++.+++++
T Consensus       194 ~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~---~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~  269 (301)
T d1l0qa2         194 DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI---TARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVS  269 (301)
T ss_dssp             EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE---EEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             ecccccCCcceeeccccccccccccccceeeeeeeeecCCCeE---EEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEE
Confidence            11112345667888888754444432  347899999998873   555543 456899999999982   667899999


Q ss_pred             eeecce
Q 020480          297 HRHSRY  302 (325)
Q Consensus       297 ~~~~~~  302 (325)
                      +||...
T Consensus       270 v~D~~t  275 (301)
T d1l0qa2         270 VIDTAT  275 (301)
T ss_dssp             EEETTT
T ss_pred             EEECCC
Confidence            998754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.46  E-value=1.1e-12  Score=115.95  Aligned_cols=146  Identities=10%  Similarity=-0.037  Sum_probs=110.7

Q ss_pred             EEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccc
Q 020480          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA  219 (325)
Q Consensus       140 ~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  219 (325)
                      ++++.+.+|+|.|||..+          .+.+..+..+. .+..++|+|+|+ ++++++.|+.+++||+.++.... ...
T Consensus        34 ~~v~~~d~g~v~v~D~~t----------~~v~~~~~~g~-~~~~v~fSpDG~-~l~~~s~dg~v~~~d~~t~~~~~-~~~  100 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGST----------YEIKTVLDTGY-AVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPTT-VAE  100 (432)
T ss_dssp             EEEEETTTTEEEEEETTT----------CCEEEEEECSS-CEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCCE-EEE
T ss_pred             EEEEEcCCCEEEEEECCC----------CcEEEEEeCCC-CeeEEEECCCCC-EEEEEcCCCCEEEEEeeCCCceE-EEE
Confidence            468889999999999987          45577777664 699999999999 89999999999999998764311 112


Q ss_pred             eEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeec-----------cCCCeeEEEeCCCCCc-
Q 020480          220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-----------HQSEVGVSILNASFRL-  287 (325)
Q Consensus       220 ~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------h~~~v~~i~~~p~~~~-  287 (325)
                      +.....|...+.+..|+|+|..++++++.+++|++||..+++.   +..+..           +......+.++|+|.. 
T Consensus       101 i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~  177 (432)
T d1qksa2         101 IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP---KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF  177 (432)
T ss_dssp             EECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE---EEEEECCEECTTTCCEESCCCEEEEEECSSSSEE
T ss_pred             EecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccc---eeeeccCCccccceeccCCCceeEEEECCCCCEE
Confidence            2333456666777788999976778999999999999998873   554433           3345677889998873 


Q ss_pred             --cCCCCceEEeeecc
Q 020480          288 --SHEDTCTCTHRHSR  301 (325)
Q Consensus       288 --~~~~d~~~~~~~~~  301 (325)
                        +...++.+.+++..
T Consensus       178 ~vs~~~~~~i~~~d~~  193 (432)
T d1qksa2         178 IVNVKETGKILLVDYT  193 (432)
T ss_dssp             EEEETTTTEEEEEETT
T ss_pred             EEEEccCCeEEEEEcc
Confidence              55667788877643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=1e-12  Score=110.99  Aligned_cols=237  Identities=9%  Similarity=0.087  Sum_probs=150.4

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+++|++|+.+.......+.....+-.+..++|+|++.          .|+++..    .++.|.++++...        
T Consensus        12 ~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~----------~L~v~~~----~d~~i~~~~i~~~--------   69 (333)
T d1ri6a_          12 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR----------YLYVGVR----PEFRVLAYRIAPD--------   69 (333)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSS----------EEEEEET----TTTEEEEEEECTT--------
T ss_pred             CCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCC----------EEEEEEC----CCCeEEEEEEeCC--------
Confidence            56789999987654333343333334567899999985          4544443    2357888887411        


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEeccCCCeeEEEecCCCCcEEEEEe-cCCeEEEEeCCCCCCCCCCCCCCCCcEEEe
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKT-VSAEVYVFDYSKHPSKPPLDGACSPDLRLR  175 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  175 (325)
                                      ....+......+...+..++|+|+| ++|++++ .++.|.+|+...        ..........
T Consensus        70 ----------------~~~~~~~~~~~~~~~p~~l~~spDg-~~l~v~~~~~~~v~~~~~~~--------~~~~~~~~~~  124 (333)
T d1ri6a_          70 ----------------DGALTFAAESALPGSLTHISTDHQG-QFVFVGSYNAGNVSVTRLED--------GLPVGVVDVV  124 (333)
T ss_dssp             ----------------TCCEEEEEEEECSSCCSEEEECTTS-SEEEEEETTTTEEEEEEEET--------TEEEEEEEEE
T ss_pred             ----------------CCcEEEeeecccCCCceEEEEcCCC-CEEeecccCCCceeeecccc--------ccceeccccc
Confidence                            2344555556677778899999999 4555555 577999998765        2222233445


Q ss_pred             cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCc----------------c----------------------
Q 020480          176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKS----------------L----------------------  217 (325)
Q Consensus       176 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~----------------~----------------------  217 (325)
                      .+...++++.++|++...+.....+..|.+|+.........                +                      
T Consensus       125 ~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~  204 (333)
T d1ri6a_         125 EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVW  204 (333)
T ss_dssp             CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEE
Confidence            67778889999999984444444566788888655321100                0                      


Q ss_pred             ---------cceEeee------cCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeC
Q 020480          218 ---------EAMQIFK------VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN  282 (325)
Q Consensus       218 ---------~~~~~~~------~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~  282 (325)
                               .......      ........+++++++..+++++..++.+.+|++........+.........+.+++|+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~s  284 (333)
T d1ri6a_         205 ELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVD  284 (333)
T ss_dssp             ESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEEC
T ss_pred             eecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEe
Confidence                     0000000      0123455677888887777778888999999998765421222223344567889999


Q ss_pred             CCCCc---cCCCCceEEeeec
Q 020480          283 ASFRL---SHEDTCTCTHRHS  300 (325)
Q Consensus       283 p~~~~---~~~~d~~~~~~~~  300 (325)
                      |+|+.   ++..++++++|++
T Consensus       285 pDGk~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         285 HSGKYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             TTSSEEEEECTTTCEEEEEEE
T ss_pred             CCCCEEEEEECCCCeEEEEEE
Confidence            99994   4566788999855

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.43  E-value=2.8e-13  Score=119.45  Aligned_cols=121  Identities=17%  Similarity=-0.015  Sum_probs=91.9

Q ss_pred             EEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccc
Q 020480          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA  219 (325)
Q Consensus       140 ~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  219 (325)
                      ++++++.||+|+|||+.+          .+.+.++..|. .+..++|+|+|. ++++++.|+.|++||+.+++... ...
T Consensus        34 ~~V~~~~dg~v~vwD~~t----------~~~~~~l~~g~-~~~~vafSPDGk-~l~~~~~d~~v~vwd~~t~~~~~-~~~  100 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDS----------KKIVKVIDTGY-AVHISRMSASGR-YLLVIGRDARIDMIDLWAKEPTK-VAE  100 (426)
T ss_dssp             EEEEETTTTEEEEEETTT----------CSEEEEEECCS-SEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCEE-EEE
T ss_pred             EEEEEcCCCEEEEEECCC----------CcEEEEEeCCC-CeeEEEECCCCC-EEEEEeCCCCEEEEEccCCceeE-EEE
Confidence            457788999999999987          45577787764 689999999999 89999999999999999875311 011


Q ss_pred             eEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCe
Q 020480          220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (325)
Q Consensus       220 ~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  276 (325)
                      +....+|...+.+++|+|+|..+++++..++.+++||..+...   +..+..|...+
T Consensus       101 i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~---~~~~~~~~~~~  154 (426)
T d1hzua2         101 IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP---KQIVSTRGMTV  154 (426)
T ss_dssp             EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE---EEEEECCEECS
T ss_pred             EeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce---eEEeeccCCCc
Confidence            2223456667788889999976677778999999999998873   55554444333

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.39  E-value=3.5e-11  Score=99.67  Aligned_cols=161  Identities=11%  Similarity=0.056  Sum_probs=120.8

Q ss_pred             EEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEE
Q 020480          117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (325)
Q Consensus       117 ~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  196 (325)
                      +.++.+.....+..++|+|+|..+++++..++.|++||+.+          ...+..+..+. .+..+.|++++...+++
T Consensus        23 ~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   91 (301)
T d1l0qa2          23 KVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT----------NNVIATVPAGS-SPQGVAVSPDGKQVYVT   91 (301)
T ss_dssp             EEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT----------TEEEEEEECSS-SEEEEEECTTSSEEEEE
T ss_pred             eEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC----------Cceeeeeeccc-ccccccccccccccccc
Confidence            44556777777889999999955567888899999999987          34466676665 46899999999867777


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCe
Q 020480          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (325)
Q Consensus       197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  276 (325)
                      +..++.+.+|+...+      .....+. +......++|+|++..+++++..++.+.+|+..+...   +..+. +...+
T Consensus        92 ~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~  160 (301)
T d1l0qa2          92 NMASSTLSVIDTTSN------TVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV---INTVS-VGRSP  160 (301)
T ss_dssp             ETTTTEEEEEETTTT------EEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE---EEEEE-CCSSE
T ss_pred             ccccceeeecccccc------eeeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccce---eeecc-cCCCc
Confidence            888899999999876      3344444 3456788999999877777888899999999998873   55544 44568


Q ss_pred             eEEEeCCCCCc---cCCCCceEEeee
Q 020480          277 GVSILNASFRL---SHEDTCTCTHRH  299 (325)
Q Consensus       277 ~~i~~~p~~~~---~~~~d~~~~~~~  299 (325)
                      ..++++|++..   .........++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (301)
T d1l0qa2         161 KGIAVTPDGTKVYVANFDSMSISVID  186 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eEEEeeccccceeeeccccccccccc
Confidence            88999998873   333344444443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.36  E-value=1.4e-11  Score=108.38  Aligned_cols=163  Identities=9%  Similarity=0.006  Sum_probs=107.6

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe---cCCCceEEEEecCCCCCeEEE
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR---GHSTEGYGLSWSKFKEGHLLS  196 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~l~s  196 (325)
                      ..+.+...+..++|+|+| +++++++.||.|++||+.+        +.......+.   +|...+.+++|+|+|..++++
T Consensus        56 ~~l~~g~~~~~vafSPDG-k~l~~~~~d~~v~vwd~~t--------~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~  126 (426)
T d1hzua2          56 KVIDTGYAVHISRMSASG-RYLLVIGRDARIDMIDLWA--------KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAG  126 (426)
T ss_dssp             EEEECCSSEEEEEECTTS-CEEEEEETTSEEEEEETTS--------SSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEE
T ss_pred             EEEeCCCCeeEEEECCCC-CEEEEEeCCCCEEEEEccC--------CceeEEEEEeCCCCCcceEEeeeecCCCCEEEEe
Confidence            445555679999999999 6889999999999999987        3222222332   455667788899999955577


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceEeeecCC-----------ccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCC
Q 020480          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHE-----------GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP  265 (325)
Q Consensus       197 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----------~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  265 (325)
                      +..++.+++||.....      +......|.           .....+..++++..++.+....+.+.+++......  .
T Consensus       127 ~~~~~~v~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~--~  198 (426)
T d1hzua2         127 AYWPPQFAIMDGETLE------PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN--L  198 (426)
T ss_dssp             EEESSEEEEEETTTCC------EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSS--C
T ss_pred             ecCCCeEEEEcCCccc------eeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccc--e
Confidence            7789999999998863      344444333           33444555555544444444455555555555442  2


Q ss_pred             eeEeeccCCCeeEEEeCCCCCc---cCCCCceEEeee
Q 020480          266 VQSVVAHQSEVGVSILNASFRL---SHEDTCTCTHRH  299 (325)
Q Consensus       266 ~~~~~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~  299 (325)
                      ......+...+..++|+|++++   ....+..+.+++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~  235 (426)
T d1hzua2         199 TVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVID  235 (426)
T ss_dssp             EEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEE
T ss_pred             eeEEeccCCccEeeeECCCCcEEEeeeecccceeeee
Confidence            3334567788999999999984   333444555544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=7.4e-11  Score=99.18  Aligned_cols=173  Identities=7%  Similarity=0.029  Sum_probs=114.8

Q ss_pred             CceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCC-cEEEecCCCceEEEEecCCCCC
Q 020480          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSP-DLRLRGHSTEGYGLSWSKFKEG  192 (325)
Q Consensus       114 ~~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~p~~~~  192 (325)
                      +.++.++.+.|.+.+..++|+|+|..+++++..|+.|++|++..        ..... ......+...+..++|+|++. 
T Consensus        25 ~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~--------~~~~~~~~~~~~~~~~p~~l~~spDg~-   95 (333)
T d1ri6a_          25 GALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP--------DDGALTFAAESALPGSLTHISTDHQGQ-   95 (333)
T ss_dssp             SCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT--------TTCCEEEEEEEECSSCCSEEEECTTSS-
T ss_pred             CCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeC--------CCCcEEEeeecccCCCceEEEEcCCCC-
Confidence            45677788899999999999999954556666799999999876        11111 111223445678899999999 


Q ss_pred             eEEEEe-CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCee---E
Q 020480          193 HLLSGS-DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ---S  268 (325)
Q Consensus       193 ~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~  268 (325)
                      +|++++ .++.+.+|+......    ........+...+.++.++|++..+++....+..+.+|+...........   .
T Consensus        96 ~l~v~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  171 (333)
T d1ri6a_          96 FVFVGSYNAGNVSVTRLEDGLP----VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV  171 (333)
T ss_dssp             EEEEEETTTTEEEEEEEETTEE----EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE
T ss_pred             EEeecccCCCceeeeccccccc----eecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceee
Confidence            566665 577899998776532    12233345666788899999986555555577789999988765310000   0


Q ss_pred             eeccCCCeeEEEeCCCCCc---cCCCCceEEeee
Q 020480          269 VVAHQSEVGVSILNASFRL---SHEDTCTCTHRH  299 (325)
Q Consensus       269 ~~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~  299 (325)
                      ..........++|++++..   .........++.
T Consensus       172 ~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~  205 (333)
T d1ri6a_         172 TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE  205 (333)
T ss_dssp             ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eeecCCCccEEEEeccceeEEeeccccCceEEEe
Confidence            1223455688999998874   333344444443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.27  E-value=8.2e-11  Score=98.82  Aligned_cols=224  Identities=9%  Similarity=0.011  Sum_probs=140.2

Q ss_pred             hHHHHhhhHhcChhHHHHhhhcCCCCCceEEEEeeCCCCCCCCCcceEEEEEEecCCCCCCCeEEEEEEECCCCCCCccc
Q 020480           17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDA   96 (325)
Q Consensus        17 ~~~~~~iw~~~~~~~y~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~   96 (325)
                      .+.+++||+..+..+...+.......-..+++|+|++.          .+++...    ..+.|.++++.          
T Consensus         9 ~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~----------~l~v~~~----~~~~v~v~D~~----------   64 (337)
T d1pbyb_           9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR----------IAYATVN----KSESLVKIDLV----------   64 (337)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSS----------EEEEEET----TTTEEEEEETT----------
T ss_pred             CCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCC----------EEEEEEC----CCCeEEEEECC----------
Confidence            46788999998876655554333333346899999875          3333221    23467777652          


Q ss_pred             CCCCcccCCCCCCCCCCCceEEEEEe----ccCCCeeEEEecCCCCcEEEEEe------------cCCeEEEEeCCCCCC
Q 020480           97 RHYDDDRSDFGGFGCANGKVQIIQQI----NHDGEVNRARYMPQNPFLIATKT------------VSAEVYVFDYSKHPS  160 (325)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~v~~v~~~~~~~~~la~g~------------~dg~v~vwd~~~~~~  160 (325)
                                      .++.......    .+...+..++|+|++ +.++++.            .++.+.+||...   
T Consensus        65 ----------------t~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~---  124 (337)
T d1pbyb_          65 ----------------TGETLGRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAET---  124 (337)
T ss_dssp             ----------------TCCEEEEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTT---
T ss_pred             ----------------CCcEEEEEecCCCcccccceeeEEEcCCC-cEEEEeecCCcceeeeccccccceeeccccC---
Confidence                            1122111111    122345678999998 4665554            356788898876   


Q ss_pred             CCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCc------------------c-----
Q 020480          161 KPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKS------------------L-----  217 (325)
Q Consensus       161 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~------------------~-----  217 (325)
                             ......+. +...+..++|+|++. ++++++.  .+.+||...+.....                  +     
T Consensus       125 -------~~~~~~~~-~~~~~~~~~~s~dg~-~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (337)
T d1pbyb_         125 -------LSRRKAFE-APRQITMLAWARDGS-KLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE  193 (337)
T ss_dssp             -------TEEEEEEE-CCSSCCCEEECTTSS-CEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCT
T ss_pred             -------CeEEEecc-ccCCceEEEEcCCCC-EEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeecccc
Confidence                   23344444 445688999999999 6777764  467788765421000                  0     


Q ss_pred             -------------------------------------cceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCC
Q 020480          218 -------------------------------------EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP  260 (325)
Q Consensus       218 -------------------------------------~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~  260 (325)
                                                           .....+..+...+..++++|++ .+++.+  ++.|++||+.+.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~i~v~d~~~~  270 (337)
T d1pbyb_         194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKN  270 (337)
T ss_dssp             TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTT
T ss_pred             ccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccc-eEEEEc--cccEEEEECCCC
Confidence                                                 0011122344556666777765 354433  589999999998


Q ss_pred             CCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          261 SVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       261 ~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      +.   +..+. +...+.+++|+|+|+.  +++.++++++|+...
T Consensus       271 ~~---~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         271 AS---IKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             EE---EEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             cE---EEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            74   55553 5677899999999984  788899999999865

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.27  E-value=3.2e-11  Score=101.41  Aligned_cols=141  Identities=7%  Similarity=-0.074  Sum_probs=99.9

Q ss_pred             cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec--CCCceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCc
Q 020480          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG--HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKS  216 (325)
Q Consensus       139 ~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~  216 (325)
                      .++++++.|++|++||+.+          .+.+..+..  +...+.+++|+|+|..++++++.++.|.+||+.+++    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s----------~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~----   67 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEK----------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE----   67 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT----------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC----
T ss_pred             eEEEEEcCCCEEEEEECCC----------CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc----
Confidence            5899999999999999987          344555553  445678999999998445778889999999999873    


Q ss_pred             ccceEeeecCC-----ccEEEEEeecCCCcEEEEEe------------cCCcEEEEEccCCCCCCCeeEeeccCCCeeEE
Q 020480          217 LEAMQIFKVHE-----GVVEDVAWHLRHEYLFGSVG------------DDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVS  279 (325)
Q Consensus       217 ~~~~~~~~~~~-----~~v~~v~~~p~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i  279 (325)
                        .+..+..+.     ..+..++|+|++. .+++++            .++.+.+||..+...   ...+. +...+..+
T Consensus        68 --~~~~~~~~~~~~~~~~~~~v~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~-~~~~~~~~  140 (337)
T d1pbyb_          68 --TLGRIDLSTPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSR---RKAFE-APRQITML  140 (337)
T ss_dssp             --EEEEEECCBTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEE---EEEEE-CCSSCCCE
T ss_pred             --EEEEEecCCCcccccceeeEEEcCCCc-EEEEeecCCcceeeeccccccceeeccccCCeE---EEecc-ccCCceEE
Confidence              344443332     3345789999985 554554            467889999998773   45544 45668899


Q ss_pred             EeCCCCCccCCCCceEEeeec
Q 020480          280 ILNASFRLSHEDTCTCTHRHS  300 (325)
Q Consensus       280 ~~~p~~~~~~~~d~~~~~~~~  300 (325)
                      +|+|+|++....++...+|+.
T Consensus       141 ~~s~dg~~l~~~~~~~~~~d~  161 (337)
T d1pbyb_         141 AWARDGSKLYGLGRDLHVMDP  161 (337)
T ss_dssp             EECTTSSCEEEESSSEEEEET
T ss_pred             EEcCCCCEEEEEcCCcceeee
Confidence            999999862222233445543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.21  E-value=1.7e-09  Score=90.93  Aligned_cols=71  Identities=4%  Similarity=-0.186  Sum_probs=52.2

Q ss_pred             CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc--cCCCCceEEeeecce
Q 020480          226 HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       226 ~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~~~~  302 (325)
                      +...+..+.+++++.. ++.+. ++.|++||+.+++.   +..+. +...+.+++|+|+|+.  +++.++.+++||...
T Consensus       250 ~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~d~~~~~~---~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t  322 (346)
T d1jmxb_         250 LTELYFTGLRSPKDPN-QIYGV-LNRLAKYDLKQRKL---IKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  322 (346)
T ss_dssp             CSSCEEEEEECSSCTT-EEEEE-ESEEEEEETTTTEE---EEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             ccceeEEEEEeCCCCE-EEEec-CCeEEEEECCCCcE---EEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence            4455666777777643 33433 46799999998873   55544 4567999999999985  778899999999864

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.14  E-value=7.4e-11  Score=99.48  Aligned_cols=139  Identities=9%  Similarity=-0.027  Sum_probs=97.8

Q ss_pred             EEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeCCCcEEEEeCC
Q 020480          131 ARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDIN  209 (325)
Q Consensus       131 v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~  209 (325)
                      ++|++++ +++++++.+++|.+||+.+          .+.+.++. .|...+.+++|+|++..+++++..++.|.+||+.
T Consensus         2 ~a~~~~~-~~l~~~~~~~~v~v~D~~t----------~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~   70 (346)
T d1jmxb_           2 PALKAGH-EYMIVTNYPNNLHVVDVAS----------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD   70 (346)
T ss_dssp             CCCCTTC-EEEEEEETTTEEEEEETTT----------TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ccCCCCC-cEEEEEcCCCEEEEEECCC----------CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCc
Confidence            4678877 7999999999999999987          34466665 4566788999999999556777889999999998


Q ss_pred             CCCCCCcccceEeeec------CCccEEEEEeecCCCcEEEEE-----------ecCCcEEEEEccCCCCCCCeeEeecc
Q 020480          210 AAPKNKSLEAMQIFKV------HEGVVEDVAWHLRHEYLFGSV-----------GDDQYLLIWDLRTPSVSKPVQSVVAH  272 (325)
Q Consensus       210 ~~~~~~~~~~~~~~~~------~~~~v~~v~~~p~~~~~l~s~-----------~~dg~i~iwd~~~~~~~~~~~~~~~h  272 (325)
                      +++.      +..+..      +...+..++|+|+|..++++.           ..++.+.+||..++.....+... ..
T Consensus        71 t~~~------~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~  143 (346)
T d1jmxb_          71 TCKN------TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PM  143 (346)
T ss_dssp             TTEE------EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-EC
T ss_pred             cCee------eeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEee-ec
Confidence            8732      333221      112356789999985444332           24788999999887643233332 22


Q ss_pred             CCCeeEEEeCCCCCc
Q 020480          273 QSEVGVSILNASFRL  287 (325)
Q Consensus       273 ~~~v~~i~~~p~~~~  287 (325)
                      ...+..+.+++++++
T Consensus       144 ~~~~~~~~~~~~~~~  158 (346)
T d1jmxb_         144 PRQVYLMRAADDGSL  158 (346)
T ss_dssp             CSSCCCEEECTTSCE
T ss_pred             cCceEEEEecCCCEE
Confidence            345666777887775

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.83  E-value=3.9e-07  Score=77.28  Aligned_cols=148  Identities=11%  Similarity=-0.099  Sum_probs=94.2

Q ss_pred             eEEEecCCCCcEEEEEe----------cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCce-------EEEEecCCCC
Q 020480          129 NRARYMPQNPFLIATKT----------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG-------YGLSWSKFKE  191 (325)
Q Consensus       129 ~~v~~~~~~~~~la~g~----------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v-------~~l~~~p~~~  191 (325)
                      ..+.|+|+| ++|++++          .++.|.+||...          .+.+..+..+....       ..+.|++++.
T Consensus        69 ~~~a~SpDG-~~l~va~~~~~~~~~~~~~~~v~v~D~~t----------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  137 (373)
T d2madh_          69 PNPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFDPVT----------FLPIADIELPDAPRFDVGPYSWMNANTPNNA  137 (373)
T ss_pred             ccEEEcCCC-CEEEEEeecCCcccccccceEEEEEECCC----------CcEEEEEecCCcceeEeccCCCcEEEEeCCC
Confidence            368999999 5666553          467899999987          33344444443332       4567888877


Q ss_pred             CeEEEE-eCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee
Q 020480          192 GHLLSG-SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV  270 (325)
Q Consensus       192 ~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  270 (325)
                      .+++.. ..++.+.+|+.....          ...+.....++.++|++...+++.+.|+.+.+||......   .....
T Consensus       138 ~~~v~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~---~~~~~  204 (373)
T d2madh_         138 DLLFFQFAAGPAVGLVVQGGSS----------DDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA---GAGLV  204 (373)
T ss_pred             cEEEEEEcCCCceEEeeccCCe----------EEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCcee---eEEEe
Confidence            433322 345678888877542          1233344677889999888889999999999999988764   33222


Q ss_pred             c------cCCCeeEEEeCCCCCc-cCCCCceEEeeec
Q 020480          271 A------HQSEVGVSILNASFRL-SHEDTCTCTHRHS  300 (325)
Q Consensus       271 ~------h~~~v~~i~~~p~~~~-~~~~d~~~~~~~~  300 (325)
                      .      .......+.+++++.+ ..+.++.+..++.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  241 (373)
T d2madh_         205 GAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADI  241 (373)
T ss_pred             eeccccCccceeeeEEECCCceEEEecCCceEEEEEc
Confidence            1      1122344566666654 4455666666543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.82  E-value=7.7e-08  Score=81.80  Aligned_cols=154  Identities=8%  Similarity=-0.115  Sum_probs=102.9

Q ss_pred             eccCCCeeEEEecCCCCcEEEEE----ecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEE
Q 020480          122 INHDGEVNRARYMPQNPFLIATK----TVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g----~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~  197 (325)
                      -.+.+++..++++|++..++++.    +..+.|.+||..+          .+.+.++..+..+  .+.|+|+|. .++++
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~t----------g~~~~~~~~~~~~--~~a~SpDG~-~l~va   83 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGS----------GSILGHVNGGFLP--NPVAAHSGS-EFALA   83 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCC----------CCEEEEEeCCCCc--cEEEcCCCC-EEEEE
Confidence            35788899999999995444432    2345799999876          3456666665543  799999999 66665


Q ss_pred             e----------CCCcEEEEeCCCCCCCCcccceEeeecCCccE-------EEEEeecCCCcEEE-EEecCCcEEEEEccC
Q 020480          198 S----------DDAQICLWDINAAPKNKSLEAMQIFKVHEGVV-------EDVAWHLRHEYLFG-SVGDDQYLLIWDLRT  259 (325)
Q Consensus       198 s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v-------~~v~~~p~~~~~l~-s~~~dg~i~iwd~~~  259 (325)
                      +          .++.|.+||..+++      .+..+..+....       ..+.|++++..+++ ....++.+.+|+...
T Consensus        84 ~~~~~~~~~~~~~~~v~v~D~~t~~------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~  157 (373)
T d2madh_          84 STSFSRIAKGKRTDYVEVFDPVTFL------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGG  157 (373)
T ss_pred             eecCCcccccccceEEEEEECCCCc------EEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccC
Confidence            4          46789999999873      344444433322       34677887754333 224466788888766


Q ss_pred             CCCCCCeeEeeccCCCeeEEEeCCCCC---ccCCCCceEEeeecc
Q 020480          260 PSVSKPVQSVVAHQSEVGVSILNASFR---LSHEDTCTCTHRHSR  301 (325)
Q Consensus       260 ~~~~~~~~~~~~h~~~v~~i~~~p~~~---~~~~~d~~~~~~~~~  301 (325)
                      .+.   .    .+.....++.|+|+|.   ++.+.|+++.+|+..
T Consensus       158 ~~~---~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~  195 (373)
T d2madh_         158 SSD---D----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHA  195 (373)
T ss_pred             CeE---E----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcC
Confidence            542   2    2334567889999987   367788888888653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.79  E-value=8.3e-09  Score=87.22  Aligned_cols=140  Identities=12%  Similarity=0.080  Sum_probs=94.1

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC----------CceEEEEecCCCCCeEE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS----------TEGYGLSWSKFKEGHLL  195 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~----------~~v~~l~~~p~~~~~l~  195 (325)
                      ..+....+.+.+ ..++.++.++.+++|++..        +....+.....+.          .....+++++++. .++
T Consensus       195 ~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~--------~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~-~~~  264 (355)
T d2bbkh_         195 FLINHPAYSQKA-GRLVWPTYTGKIHQIDLSS--------GDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD-RIY  264 (355)
T ss_dssp             CBCSCCEEETTT-TEEEEEBTTSEEEEEECTT--------SSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT-EEE
T ss_pred             ceeeeccccCCC-CeEEEecCCCeEEEEecCC--------CcEEEEeccCCcccceEeeeeeccceEEEEEeCCCC-eEE
Confidence            345556677766 5777888999999999876        2111111111111          1234578888888 444


Q ss_pred             EEeCC----------CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCc-EEEEEecCCcEEEEEccCCCCCC
Q 020480          196 SGSDD----------AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEY-LFGSVGDDQYLLIWDLRTPSVSK  264 (325)
Q Consensus       196 s~s~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~  264 (325)
                      ....+          ..|.+||..+++      .+..+. +...+.+++|+|++.. ++++++.|+.|++||+++++.  
T Consensus       265 ~~~~~~~~~~~~~~~~~v~v~d~~t~~------~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~--  335 (355)
T d2bbkh_         265 LLVDQRDEWRHKTASRFVVVLDAKTGE------RLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE--  335 (355)
T ss_dssp             EEEEECCTTCTTSCEEEEEEEETTTCC------EEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE--
T ss_pred             EEeccCCceeecCCCCeEEEEeCCCCc------EEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE--
Confidence            43322          369999998873      344443 3355889999999864 567778899999999999984  


Q ss_pred             CeeEeeccCCCeeEEEeCCCC
Q 020480          265 PVQSVVAHQSEVGVSILNASF  285 (325)
Q Consensus       265 ~~~~~~~h~~~v~~i~~~p~~  285 (325)
                       +.++..+......|.+.+.|
T Consensus       336 -~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         336 -LRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             -EEEECCCCSSCCEEECCCCC
T ss_pred             -EEEEeCcCCCccEEEeCCCC
Confidence             78887776667777776654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.58  E-value=2e-07  Score=82.08  Aligned_cols=134  Identities=10%  Similarity=-0.000  Sum_probs=94.2

Q ss_pred             EEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCc---EEEecCCCceEEEEecCCCCCeEEEEe--------
Q 020480          130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPD---LRLRGHSTEGYGLSWSKFKEGHLLSGS--------  198 (325)
Q Consensus       130 ~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~---~~~~~h~~~v~~l~~~p~~~~~l~s~s--------  198 (325)
                      .+.|.+++ .++..  .++.+.+||+.+        +....+   ..+..|...|.++.|+|++. .|+.++        
T Consensus        21 ~~~W~~d~-~~~~~--~~~~~~~~~~~t--------~~~~~~~~~~~~~~~~~~i~~~~~SpDg~-~i~~~~~~~~~~r~   88 (470)
T d2bgra1          21 SLRWISDH-EYLYK--QENNILVFNAEY--------GNSSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRH   88 (470)
T ss_dssp             CCEECSSS-EEEEE--SSSCEEEEETTT--------CCEEEEECTTTTTTSSSCCCEEEECTTSS-EEEEEEEEEECSSS
T ss_pred             CCEeCCCC-EEEEE--cCCcEEEEECCC--------CCEEEEEchhhhhhccCccceeEECCCCC-EEEEEECCcceeee
Confidence            46788877 56554  578899999987        222111   12234557899999999999 677764        


Q ss_pred             -CCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeec------
Q 020480          199 -DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA------  271 (325)
Q Consensus       199 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------  271 (325)
                       .++.+.+||+.++.       +..+..+...+..+.|+|+|. .+|. ..++.+++|+..++..   ......      
T Consensus        89 s~~~~~~l~d~~~~~-------~~~l~~~~~~~~~~~~SPDG~-~ia~-~~~~~l~~~~~~~g~~---~~~t~~~~~~~~  156 (470)
T d2bgra1          89 SYTASYDIYDLNKRQ-------LITEERIPNNTQWVTWSPVGH-KLAY-VWNNDIYVKIEPNLPS---YRITWTGKEDII  156 (470)
T ss_dssp             CEEEEEEEEETTTTE-------ECCSSCCCTTEEEEEECSSTT-CEEE-EETTEEEEESSTTSCC---EECCSCCBTTTE
T ss_pred             ccCceEEEEECCCCc-------ccccccCCccccccccccCcc-eeeE-eecccceEEECCCCce---eeeeeccCCCcc
Confidence             35678999999762       445677888899999999985 6655 4577899999988763   222111      


Q ss_pred             ------------cCCCeeEEEeCCCCCc
Q 020480          272 ------------HQSEVGVSILNASFRL  287 (325)
Q Consensus       272 ------------h~~~v~~i~~~p~~~~  287 (325)
                                  ..+....+.|+|+|+.
T Consensus       157 ~~g~~d~~~~~~~~~~~~~~~wSPDGk~  184 (470)
T d2bgra1         157 YNGITDWVYEEEVFSAYSALWWSPNGTF  184 (470)
T ss_dssp             EESBCCHHHHHHTSSSSBCEEECTTSSE
T ss_pred             cccccceeeeeeecCCccccEECCCCCc
Confidence                        1234566889999984

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.32  E-value=3.8e-06  Score=70.30  Aligned_cols=115  Identities=12%  Similarity=0.105  Sum_probs=77.2

Q ss_pred             CceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecC----------CccEEEEEeecCCCcEEEEEec
Q 020480          179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH----------EGVVEDVAWHLRHEYLFGSVGD  248 (325)
Q Consensus       179 ~~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~----------~~~v~~v~~~p~~~~~l~s~~~  248 (325)
                      ..+....+.+.+. .++.++.++.+++|++..+..    ..+.....+          ......++++|++..++++...
T Consensus       195 ~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~  269 (355)
T d2bbkh_         195 FLINHPAYSQKAG-RLVWPTYTGKIHQIDLSSGDA----KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ  269 (355)
T ss_dssp             CBCSCCEEETTTT-EEEEEBTTSEEEEEECTTSSC----EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred             ceeeeccccCCCC-eEEEecCCCeEEEEecCCCcE----EEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEecc
Confidence            3444566777776 788999999999999987642    111111111          1223457888887544443332


Q ss_pred             C---------CcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC--c--cCCCCceEEeeecce
Q 020480          249 D---------QYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR--L--SHEDTCTCTHRHSRY  302 (325)
Q Consensus       249 d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~--~~~~d~~~~~~~~~~  302 (325)
                      .         ..|.+||+.+++.   +..+. +...+.+++|+|+|+  +  +++.++++.+||...
T Consensus       270 ~~~~~~~~~~~~v~v~d~~t~~~---~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~t  332 (355)
T d2bbkh_         270 RDEWRHKTASRFVVVLDAKTGER---LAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES  332 (355)
T ss_dssp             CCTTCTTSCEEEEEEEETTTCCE---EEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             CCceeecCCCCeEEEEeCCCCcE---EEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCC
Confidence            2         3699999999873   55554 345688999999997  2  567889999998754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.25  E-value=1.9e-06  Score=75.62  Aligned_cols=119  Identities=11%  Similarity=0.075  Sum_probs=78.3

Q ss_pred             cCCCeeEEEecCCCCcEEEEEec---------CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeE
Q 020480          124 HDGEVNRARYMPQNPFLIATKTV---------SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL  194 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~---------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l  194 (325)
                      |...|.++.|+|++ +.|+.++.         ++.+.+||+..        +.   ...+..|...+..+.|+|+|. .+
T Consensus        60 ~~~~i~~~~~SpDg-~~i~~~~~~~~~~r~s~~~~~~l~d~~~--------~~---~~~l~~~~~~~~~~~~SPDG~-~i  126 (470)
T d2bgra1          60 FGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNK--------RQ---LITEERIPNNTQWVTWSPVGH-KL  126 (470)
T ss_dssp             SSSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTT--------TE---ECCSSCCCTTEEEEEECSSTT-CE
T ss_pred             ccCccceeEECCCC-CEEEEEECCcceeeeccCceEEEEECCC--------Cc---ccccccCCccccccccccCcc-ee
Confidence            56789999999999 57776643         56889999987        22   334567888999999999999 67


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCccc---ceEeeec---------CCccEEEEEeecCCCcEEEEEecCCc-EEEEEc
Q 020480          195 LSGSDDAQICLWDINAAPKNKSLE---AMQIFKV---------HEGVVEDVAWHLRHEYLFGSVGDDQY-LLIWDL  257 (325)
Q Consensus       195 ~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~---------~~~~v~~v~~~p~~~~~l~s~~~dg~-i~iwd~  257 (325)
                      |.. .++.+.+|+...+.......   .-..+.+         ..+....+.|+|+|. .||....|.+ +..|.+
T Consensus       127 a~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk-~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         127 AYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             EEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEECTTCCEEEE
T ss_pred             eEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCC-ccceeEecCCcCceEEE
Confidence            775 46789999988764310000   0000111         123345678999985 6666654433 554443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.20  E-value=7.5e-05  Score=63.08  Aligned_cols=164  Identities=10%  Similarity=0.066  Sum_probs=99.6

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe--cCCCceEEEEecCCCCCeEEEEeCCCcE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR--GHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~s~s~dg~i  203 (325)
                      ..+.++.|+|+|..++++......|.+|+....       +.........  ........+.|+|+++.+.++.-.++.|
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~-------g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V  217 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLAS-------GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRI  217 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-------SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCC-------CceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEE
Confidence            357899999999545555445568888886541       1111111221  2345678999999999555677788999


Q ss_pred             EEEeCCCCCCCCcccceEee--------------ecCCccEEEEEeecCCCcEEEEEecCC-----cEEEEEccCCCCCC
Q 020480          204 CLWDINAAPKNKSLEAMQIF--------------KVHEGVVEDVAWHLRHEYLFGSVGDDQ-----YLLIWDLRTPSVSK  264 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~--------------~~~~~~v~~v~~~p~~~~~l~s~~~dg-----~i~iwd~~~~~~~~  264 (325)
                      .+|++........ ......              ..+......+.++|++..++++...+.     .|..|++.....  
T Consensus       218 ~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~--  294 (365)
T d1jofa_         218 CEYVIDPATHMPV-YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS--  294 (365)
T ss_dssp             EEEEECTTTCCEE-EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC--
T ss_pred             EEEEecCCCceEE-EEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCc--
Confidence            9999876533110 011111              112234667899999865555543333     377777765432  


Q ss_pred             CeeEe------eccCCCeeEEEeCC-CCCc---cCCCCceEEeeec
Q 020480          265 PVQSV------VAHQSEVGVSILNA-SFRL---SHEDTCTCTHRHS  300 (325)
Q Consensus       265 ~~~~~------~~h~~~v~~i~~~p-~~~~---~~~~d~~~~~~~~  300 (325)
                       +...      ........+++++| +|++   ....++++.+|++
T Consensus       295 -~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         295 -IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             -EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             -eeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence             2221      12234567899998 7883   5567788888864

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.14  E-value=9.9e-06  Score=68.48  Aligned_cols=142  Identities=9%  Similarity=-0.135  Sum_probs=87.3

Q ss_pred             cCCCeeEEEecCCCCcEEEE--EecCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe-
Q 020480          124 HDGEVNRARYMPQNPFLIAT--KTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-  198 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~--g~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-  198 (325)
                      +.+....++..+++....++  ...+|  .|.++|...          .+.+..+..+...  .++|+|++. .+++++ 
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~----------~~~~~~~~~~~~~--~~a~spDg~-~i~~~~~   84 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGC----------GVTLGHSLGAFLS--LAVAGHSGS-DFALAST   84 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTT----------TEEEEEEEECTTC--EEEECTTSS-CEEEEEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCC----------CcEEEEEeCCCCC--cceECCCCC-EEEEEcc
Confidence            34445555666766433333  33444  466667765          3445556655544  689999998 565543 


Q ss_pred             ---------CCCcEEEEeCCCCCCCCcccceEeeecCC-------ccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC
Q 020480          199 ---------DDAQICLWDINAAPKNKSLEAMQIFKVHE-------GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV  262 (325)
Q Consensus       199 ---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-------~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  262 (325)
                               .|+.|.+||..+++      ++..+..+.       .....++|+|+|..++++...++.+.+||+.+.+.
T Consensus        85 ~~~~~~~g~~d~~v~v~D~~t~~------~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~  158 (368)
T d1mdah_          85 SFARSAKGKRTDYVEVFDPVTFL------PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EETTTTSSSEEEEEEEECTTTCC------EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             cCccccccccCCeEEEEECCCCc------EeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence                     47789999998873      333333221       22346899999976665656789999999998873


Q ss_pred             CCCeeEeeccCC-------CeeEEEeCCCCCc
Q 020480          263 SKPVQSVVAHQS-------EVGVSILNASFRL  287 (325)
Q Consensus       263 ~~~~~~~~~h~~-------~v~~i~~~p~~~~  287 (325)
                         +..+..+..       ....++++++|.+
T Consensus       159 ---~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~  187 (368)
T d1mdah_         159 ---DQLTKSASCFHIHPGAAATHYLGSCPASL  187 (368)
T ss_dssp             ---EEEEECSSCCCCEEEETTEEECCCCTTSC
T ss_pred             ---eEEeeccCcceEccCCCceEEEEcCCCCE
Confidence               454433322       2234566666663

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=0.00044  Score=54.93  Aligned_cols=149  Identities=7%  Similarity=0.032  Sum_probs=90.0

Q ss_pred             EEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       120 ~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ....+.+......|+|++..++......+...++....        . ..................+++.+...+++...
T Consensus        77 ~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (269)
T d2hqsa1          77 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL--------A-SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQ  147 (269)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET--------T-TCCEEECCCCSSCEEEEEECTTSSEEEEEECT
T ss_pred             EEeeeecccccceecCCCCeeeEeeecCCccceeeccc--------c-cccceeeeeccccccccccccccccceecccc
Confidence            34567788889999999965555554454444433332        0 11122233344455566777877756666666


Q ss_pred             CCcEEEE--eCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCee
Q 020480          200 DAQICLW--DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVG  277 (325)
Q Consensus       200 dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  277 (325)
                      +|...+|  ++....       ...............|+|++..++.+....+...+|.......   ......+.....
T Consensus       148 ~g~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~  217 (269)
T d2hqsa1         148 AGRPQVYKVNINGGA-------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---GVQVLSSTFLDE  217 (269)
T ss_dssp             TSSCEEEEEETTSSC-------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC---CEEECCCSSSCE
T ss_pred             cCCceEeeeeccccc-------ceeeecccccccccccccccceeEEEeecCCceeeeEeecccc---cceEeecCcccc
Confidence            7654444  444432       2233445566778899999876666666667777776665443   223334556677


Q ss_pred             EEEeCCCCCc
Q 020480          278 VSILNASFRL  287 (325)
Q Consensus       278 ~i~~~p~~~~  287 (325)
                      ...|+|+|+.
T Consensus       218 ~p~~SPDG~~  227 (269)
T d2hqsa1         218 TPSLAPNGTM  227 (269)
T ss_dssp             EEEECTTSSE
T ss_pred             ceEECCCCCE
Confidence            8899999984

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.13  E-value=0.00015  Score=61.16  Aligned_cols=129  Identities=9%  Similarity=0.038  Sum_probs=78.3

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-----------------cCCCceEEEEe
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-----------------GHSTEGYGLSW  186 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-----------------~h~~~v~~l~~  186 (325)
                      .......+.|+|++..++++.-.+++|.+|++...        .........                 .+......+.+
T Consensus       191 ~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  262 (365)
T d1jofa_         191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA--------THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL  262 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT--------TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE
T ss_pred             CCCceEEEEECCCCceEEEeccCCCEEEEEEecCC--------CceEEEEeeeeccccccccccccccccccCCccceEE
Confidence            34567889999999766677778899999998752        111111110                 11224568899


Q ss_pred             cCCCCCeEEEEe-CC-----CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeec-CCCcEEEEEecCCcEEEEEccC
Q 020480          187 SKFKEGHLLSGS-DD-----AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL-RHEYLFGSVGDDQYLLIWDLRT  259 (325)
Q Consensus       187 ~p~~~~~l~s~s-~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~s~~~dg~i~iwd~~~  259 (325)
                      +|++. +|+++. .+     +.|..|++...........+...........+++++| +|..++++...++.|.+|++..
T Consensus       263 spdG~-~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         263 TFSGK-YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CTTSS-EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CCCCC-EEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            99999 555543 22     2377777765422111111111112234567789998 6655566667889999999865


Q ss_pred             CC
Q 020480          260 PS  261 (325)
Q Consensus       260 ~~  261 (325)
                      ..
T Consensus       342 ~~  343 (365)
T d1jofa_         342 EF  343 (365)
T ss_dssp             TE
T ss_pred             Cc
Confidence            43

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.10  E-value=2.5e-05  Score=67.22  Aligned_cols=160  Identities=9%  Similarity=-0.004  Sum_probs=102.0

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      |.-......+.|+|..++++...+.+|.++|+.+          .+....+. .+....+.++|+|+++..++++.....
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t----------~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~  139 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDI----------MKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFV  139 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTT----------TEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCC----------CcEeeEEecCCCCCccceEEeccCCEEEEEeccCCc
Confidence            4445566677899955556777889999999987          33333333 467789999999998865565554444


Q ss_pred             E------------------EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec----------------
Q 020480          203 I------------------CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD----------------  248 (325)
Q Consensus       203 i------------------~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~----------------  248 (325)
                      +                  ..+|..+..      ....... ......+.++|+|...++++..                
T Consensus       140 v~~~~dg~~~~~~~~~~~~~~iD~~t~~------v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d  212 (441)
T d1qnia2         140 IPQPNDGTDFSLDNSYTMFTAIDAETMD------VAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRD  212 (441)
T ss_dssp             EESSCSSSCCCGGGEEEEEEEEETTTCS------EEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBC
T ss_pred             ccccCcccccccccccceEEeecCccce------eeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEE
Confidence            4                  335655542      2223222 2346778999998655544432                


Q ss_pred             ------------------------CCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCCc---cCCCCceEEeeecc
Q 020480          249 ------------------------DQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFRL---SHEDTCTCTHRHSR  301 (325)
Q Consensus       249 ------------------------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~---~~~~d~~~~~~~~~  301 (325)
                                              ++.+.+++.....   .+..+...+ ....+.++|+|++   ++..+.++.+|++.
T Consensus       213 ~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~---v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~  288 (441)
T d1qnia2         213 WVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE---FTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAID  288 (441)
T ss_dssp             EEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS---SEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred             EEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc---eEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence                                    2333344333333   244554443 3578999999994   78899999999976


Q ss_pred             eee
Q 020480          302 YLL  304 (325)
Q Consensus       302 ~~~  304 (325)
                      .+.
T Consensus       289 k~~  291 (441)
T d1qnia2         289 KLD  291 (441)
T ss_dssp             GHH
T ss_pred             hhh
Confidence            543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.07  E-value=9.5e-06  Score=68.60  Aligned_cols=138  Identities=14%  Similarity=-0.085  Sum_probs=84.6

Q ss_pred             eEEEecCCCCcEEEEE----------ecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-------CceEEEEecCCCC
Q 020480          129 NRARYMPQNPFLIATK----------TVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-------TEGYGLSWSKFKE  191 (325)
Q Consensus       129 ~~v~~~~~~~~~la~g----------~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~l~~~p~~~  191 (325)
                      ..++|+|+| +.|++.          ..|+.|.+||..+          .+++..+..+.       .....++|+|+++
T Consensus        68 ~~~a~spDg-~~i~~~~~~~~~~~~g~~d~~v~v~D~~t----------~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk  136 (368)
T d1mdah_          68 SLAVAGHSG-SDFALASTSFARSAKGKRTDYVEVFDPVT----------FLPIADIELPDAPRFSVGPRVHIIGNCASSA  136 (368)
T ss_dssp             CEEEECTTS-SCEEEEEEEETTTTSSSEEEEEEEECTTT----------CCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred             CcceECCCC-CEEEEEcccCccccccccCCeEEEEECCC----------CcEeeeecCCccceecccCCccceEECCCCC
Confidence            358999999 455543          3467899999987          33344443322       1234689999999


Q ss_pred             CeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCe---eE
Q 020480          192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV---QS  268 (325)
Q Consensus       192 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~  268 (325)
                      .++++...++.+.+||+...      .....+..+....    +.|.+...+++.+.||.+.++++.........   ..
T Consensus       137 ~l~va~~~~~~v~~~d~~~~------~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~  206 (368)
T d1mdah_         137 CLLFFLFGSSAAAGLSVPGA------SDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC  206 (368)
T ss_dssp             CEEEEECSSSCEEEEEETTT------EEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred             EEEEEeCCCCeEEEEECCCC------cEeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccc
Confidence            54444456799999999886      3344444333221    23334567778889999999998766531100   01


Q ss_pred             eeccCCCeeEEEeCCCCCc
Q 020480          269 VVAHQSEVGVSILNASFRL  287 (325)
Q Consensus       269 ~~~h~~~v~~i~~~p~~~~  287 (325)
                      ...+...+..+.+.+++.+
T Consensus       207 ~~~~~~~~~~~~~~~~g~~  225 (368)
T d1mdah_         207 TGAQNCSSQAAQANYPGML  225 (368)
T ss_dssp             CTTSCBCSCCEEETTTTEE
T ss_pred             ccccccceeecccccCcEE
Confidence            1223334455666766664

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.05  E-value=5.1e-05  Score=65.29  Aligned_cols=168  Identities=7%  Similarity=-0.102  Sum_probs=99.5

Q ss_pred             ceEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeE------------------EEEeCCCCCCCCCCCCCCCCcEEEec
Q 020480          115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEV------------------YVFDYSKHPSKPPLDGACSPDLRLRG  176 (325)
Q Consensus       115 ~~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v------------------~vwd~~~~~~~~~~~~~~~~~~~~~~  176 (325)
                      +...+..+++...+..++|+|++...++++.....+                  ..+|..+          ......+..
T Consensus       105 k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t----------~~v~~qI~v  174 (441)
T d1qnia2         105 KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET----------MDVAWQVIV  174 (441)
T ss_dssp             EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT----------CSEEEEEEE
T ss_pred             cEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc----------ceeeEEEec
Confidence            344444567888999999999985544444433334                  3355444          233333332


Q ss_pred             CCCceEEEEecCCCCCeEEEEeCC-----------------------------------------CcEEEEeCCCCCCCC
Q 020480          177 HSTEGYGLSWSKFKEGHLLSGSDD-----------------------------------------AQICLWDINAAPKNK  215 (325)
Q Consensus       177 h~~~v~~l~~~p~~~~~l~s~s~d-----------------------------------------g~i~iwd~~~~~~~~  215 (325)
                      . .....+.++|++. ++++.+.+                                         +.+.+++....    
T Consensus       175 ~-~~p~~v~~spdGk-~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~----  248 (441)
T d1qnia2         175 D-GNLDNTDADYTGK-YATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGES----  248 (441)
T ss_dssp             S-SCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSC----
T ss_pred             C-CCccceEECCCCC-EEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCC----
Confidence            2 3467899999998 45544432                                         22233322221    


Q ss_pred             cccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCC-----CCCeeEeeccC---CCeeEEEeCCCCCc
Q 020480          216 SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-----SKPVQSVVAHQ---SEVGVSILNASFRL  287 (325)
Q Consensus       216 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~h~---~~v~~i~~~p~~~~  287 (325)
                        ..+..+... .....+.++|+|..+++++..+++|.+||+.....     ..+...+.++.   -.....+|+++|..
T Consensus       249 --~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~  325 (441)
T d1qnia2         249 --EFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNA  325 (441)
T ss_dssp             --SSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEE
T ss_pred             --ceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceE
Confidence              123333332 23567899999987788899999999999875321     11112222221   12355689999875


Q ss_pred             --cCCCCceEEeeecc
Q 020480          288 --SHEDTCTCTHRHSR  301 (325)
Q Consensus       288 --~~~~d~~~~~~~~~  301 (325)
                        +...|.++.-|++.
T Consensus       326 yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         326 YTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             EEEETTTTEEEEEEHH
T ss_pred             EEcccccceEEEeccc
Confidence              66788888888863

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.88  E-value=0.0007  Score=54.48  Aligned_cols=151  Identities=8%  Similarity=-0.005  Sum_probs=100.2

Q ss_pred             CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE--ecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL--RGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      ......+++.+++ .++++....+.+.+++...           ..+..+  ..+......+++.+++. ++++....+.
T Consensus       113 ~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~g-----------~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~~~~~  179 (279)
T d1q7fa_         113 LQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNG-----------NVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHC  179 (279)
T ss_dssp             CSCEEEEEECTTS-CEEEEETTTTEEEEECTTS-----------CEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTE
T ss_pred             ccccceeccccCC-cEEEEeeccceeeEeccCC-----------ceeecccccccccccceeeecccee-EEeeeccccc
Confidence            3456678888877 5666666677788887654           223333  24556788999999887 8888888899


Q ss_pred             EEEEeCCCCCCCCcccceEeee--cCCccEEEEEeecCCCcEEEEEe-cCCcEEEEEccCCCCCCCeeEeec--cCCCee
Q 020480          203 ICLWDINAAPKNKSLEAMQIFK--VHEGVVEDVAWHLRHEYLFGSVG-DDQYLLIWDLRTPSVSKPVQSVVA--HQSEVG  277 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~  277 (325)
                      |++||....       .+..+.  +.......+++.+++ +++++-. .++.|.+|+. .++   .+.++..  ......
T Consensus       180 V~~~d~~G~-------~~~~~g~~g~~~~P~giavD~~G-~i~Vad~~~~~~v~~f~~-~G~---~~~~~~~~~~~~~p~  247 (279)
T d1q7fa_         180 VKVFNYEGQ-------YLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQ-DGQ---LISALESKVKHAQCF  247 (279)
T ss_dssp             EEEEETTCC-------EEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECT-TSC---EEEEEEESSCCSCEE
T ss_pred             eeeeecCCc-------eeeeecccccccCCcccccccCC-eEEEEECCCCcEEEEECC-CCC---EEEEEeCCCCCCCEe
Confidence            999997642       233332  344567889999998 5776654 3457999984 344   2444432  234578


Q ss_pred             EEEeCCCCCc-cCCCCceEEeeec
Q 020480          278 VSILNASFRL-SHEDTCTCTHRHS  300 (325)
Q Consensus       278 ~i~~~p~~~~-~~~~d~~~~~~~~  300 (325)
                      .|++.|+|.+ .++.+..++++..
T Consensus       248 ~vav~~dG~l~V~~~n~~v~~fr~  271 (279)
T d1q7fa_         248 DVALMDDGSVVLASKDYRLYIYRY  271 (279)
T ss_dssp             EEEEETTTEEEEEETTTEEEEEEC
T ss_pred             EEEEeCCCcEEEEeCCCeEEEEEe
Confidence            8999999986 3334455555543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.85  E-value=0.00072  Score=55.09  Aligned_cols=127  Identities=9%  Similarity=0.068  Sum_probs=91.6

Q ss_pred             eEEEEEeccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEE
Q 020480          116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL  195 (325)
Q Consensus       116 ~~~~~~~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~  195 (325)
                      .+.+..+.-...+..+++.|+| +++++...+++|..++...         .   ...+......+.+++|++++. +++
T Consensus        18 ~~v~~~~p~~~~~e~iAv~pdG-~l~vt~~~~~~I~~i~p~g---------~---~~~~~~~~~~~~gla~~~dG~-l~v   83 (302)
T d2p4oa1          18 AKIITSFPVNTFLENLASAPDG-TIFVTNHEVGEIVSITPDG---------N---QQIHATVEGKVSGLAFTSNGD-LVA   83 (302)
T ss_dssp             EEEEEEECTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTC---------C---EEEEEECSSEEEEEEECTTSC-EEE
T ss_pred             ccEEEECCCCCCcCCEEECCCC-CEEEEeCCCCEEEEEeCCC---------C---EEEEEcCCCCcceEEEcCCCC-eEE
Confidence            4555566655678899999999 6999988899998888654         1   334455667899999999998 888


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCC
Q 020480          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP  260 (325)
Q Consensus       196 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~  260 (325)
                      +...++.+..++.......  ...+. ........+.+++.+++ +++++.+.++.+..+|....
T Consensus        84 ~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~  144 (302)
T d2p4oa1          84 TGWNADSIPVVSLVKSDGT--VETLL-TLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQP  144 (302)
T ss_dssp             EEECTTSCEEEEEECTTSC--EEEEE-ECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTT
T ss_pred             EecCCceEEEEEecccccc--eeecc-ccCCccccceeEEccCC-CEEeeccccccceeeeccCC
Confidence            8888888988887654321  01111 12234567889999987 68888787888877776653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=0.0013  Score=52.14  Aligned_cols=139  Identities=11%  Similarity=0.023  Sum_probs=84.3

Q ss_pred             CCCeeEEEecCCCCcEEEEEecCCe--EEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          125 DGEVNRARYMPQNPFLIATKTVSAE--VYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      ........+++.+...+++...+|.  |.+.++..           .....+..+........|+|++..++.+....+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~  194 (269)
T d2hqsa1         126 RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-----------GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ  194 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-----------SCCEECCCSSSEEEEEEECTTSSEEEEEEECSSC
T ss_pred             cccccccccccccccceecccccCCceEeeeeccc-----------ccceeeecccccccccccccccceeEEEeecCCc
Confidence            3344455667766556666666664  44445443           2233344556677888999999955555555666


Q ss_pred             EEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEec--CCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD--DQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      ..+|.......      ......+........|+|+|..++.+...  ...|+++++....    ...+....+.+...+
T Consensus       195 ~~i~~~~~~~~------~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~----~~~lt~~~g~~~~p~  264 (269)
T d2hqsa1         195 QHIAKQDLATG------GVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF----KARLPATDGQVKFPA  264 (269)
T ss_dssp             EEEEEEETTTC------CEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC----EEECCCSSSEEEEEE
T ss_pred             eeeeEeecccc------cceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC----EEEEeCCCCcEEeEE
Confidence            66665543322      11223345556778999999655444433  3457888887665    455555567788899


Q ss_pred             eCCC
Q 020480          281 LNAS  284 (325)
Q Consensus       281 ~~p~  284 (325)
                      |+|-
T Consensus       265 WSP~  268 (269)
T d2hqsa1         265 WSPY  268 (269)
T ss_dssp             ECCC
T ss_pred             eCCC
Confidence            9983

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.65  E-value=0.0012  Score=52.49  Aligned_cols=138  Identities=4%  Similarity=-0.033  Sum_probs=91.6

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  204 (325)
                      .....+++.+++ +++++-..+..+..++...           ....... .-.....++++++++. ++++...++.|.
T Consensus        98 ~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~-----------~~~~~~~~~~~~~p~~i~~~~~g~-~~v~~~~~~~i~  164 (260)
T d1rwia_          98 NYPEGLAVDTQG-AVYVADRGNNRVVKLAAGS-----------KTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVV  164 (260)
T ss_dssp             CSEEEEEECTTC-CEEEEEGGGTEEEEECTTC-----------SSCEECCCCSCCSCCEEEECTTCC-EEEEEGGGTEEE
T ss_pred             eecccccccccc-eeEeecccccccccccccc-----------ceeeeeeecccCCcceeeecCCCC-Eeeecccccccc
Confidence            456788998887 6777666667777777654           1111111 1123457899999887 788888889999


Q ss_pred             EEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEe-eccCCCeeEEEeCC
Q 020480          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSEVGVSILNA  283 (325)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~i~~~p  283 (325)
                      .+|......      .......-.....+++.+++ +++++....+.|..++.....    ...+ ...-.....|++++
T Consensus       165 ~~d~~~~~~------~~~~~~~~~~p~gi~~d~~g-~l~vsd~~~~~i~~~~~~~~~----~~~~~~~~~~~P~~i~~d~  233 (260)
T d1rwia_         165 KLEAESNNQ------VVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTT----STVLPFTGLNTPLAVAVDS  233 (260)
T ss_dssp             EECTTTCCE------EECCCSSCCSEEEEEECTTC-CEEEEETTTTEEEEECTTCSC----CEECCCCSCCCEEEEEECT
T ss_pred             cccccccee------eeeeccccCCCccceeeeee-eeeeeecCCCEEEEEeCCCCe----EEEEccCCCCCeEEEEEeC
Confidence            999875421      11112334557889999987 688888888888888765443    2222 22224567899999


Q ss_pred             CCCc
Q 020480          284 SFRL  287 (325)
Q Consensus       284 ~~~~  287 (325)
                      +|.+
T Consensus       234 ~g~l  237 (260)
T d1rwia_         234 DRTV  237 (260)
T ss_dssp             TCCE
T ss_pred             CCCE
Confidence            8876

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.59  E-value=0.00037  Score=56.88  Aligned_cols=96  Identities=11%  Similarity=0.024  Sum_probs=73.7

Q ss_pred             ceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccC
Q 020480          180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (325)
Q Consensus       180 ~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~  259 (325)
                      .+..++++|+|. ++++...+++|..|+....        ...+......+.+++|+|++ +++++...++.+..++...
T Consensus        29 ~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~--------~~~~~~~~~~~~gla~~~dG-~l~v~~~~~~~~~~~~~~~   98 (302)
T d2p4oa1          29 FLENLASAPDGT-IFVTNHEVGEIVSITPDGN--------QQIHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVK   98 (302)
T ss_dssp             CEEEEEECTTSC-EEEEETTTTEEEEECTTCC--------EEEEEECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEEC
T ss_pred             CcCCEEECCCCC-EEEEeCCCCEEEEEeCCCC--------EEEEEcCCCCcceEEEcCCC-CeEEEecCCceEEEEEecc
Confidence            578999999998 8999999999999986643        33445566789999999998 6888888889999888876


Q ss_pred             CCCCCCeeEe--eccCCCeeEEEeCCCCCc
Q 020480          260 PSVSKPVQSV--VAHQSEVGVSILNASFRL  287 (325)
Q Consensus       260 ~~~~~~~~~~--~~h~~~v~~i~~~p~~~~  287 (325)
                      ...  ....+  .......+.+++.++|.+
T Consensus        99 ~~~--~~~~~~~~~~~~~~n~i~~~~~g~~  126 (302)
T d2p4oa1          99 SDG--TVETLLTLPDAIFLNGITPLSDTQY  126 (302)
T ss_dssp             TTS--CEEEEEECTTCSCEEEEEESSSSEE
T ss_pred             ccc--ceeeccccCCccccceeEEccCCCE
Confidence            542  23332  223456889999999986

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.51  E-value=0.0014  Score=53.64  Aligned_cols=103  Identities=8%  Similarity=0.085  Sum_probs=68.0

Q ss_pred             ceEEEEecCCCC----CeEEEEeCCCcEEEEeCCCCCCCCcccceEeeec-CCccEEEEEeecCCCcEEEEEecCCcEEE
Q 020480          180 EGYGLSWSKFKE----GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDDQYLLI  254 (325)
Q Consensus       180 ~v~~l~~~p~~~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~s~~~dg~i~i  254 (325)
                      ....++|+|++.    .++++-+..+.|..||+..............+.. .......+++..+| +++++....+.|.+
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G-nlyVa~~~~g~I~~  251 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEV  251 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCC-cEEEEEcCCCEEEE
Confidence            346788988764    2556667788999998765422100001111111 22345678999887 68888888899999


Q ss_pred             EEccCCCCCCCeeEeeccCCCeeEEEeCCCCC
Q 020480          255 WDLRTPSVSKPVQSVVAHQSEVGVSILNASFR  286 (325)
Q Consensus       255 wd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~  286 (325)
                      ||...+..   +..+.......++++|.|+++
T Consensus       252 ~dp~~g~~---~~~i~~p~~~~t~~afg~d~~  280 (314)
T d1pjxa_         252 FGPDGGQP---KMRIRCPFEKPSNLHFKPQTK  280 (314)
T ss_dssp             ECTTCBSC---SEEEECSSSCEEEEEECTTSS
T ss_pred             EeCCCCEE---EEEEECCCCCEEEEEEeCCCC
Confidence            99887763   555555556789999999886

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.41  E-value=0.0025  Score=50.50  Aligned_cols=138  Identities=8%  Similarity=-0.031  Sum_probs=87.6

Q ss_pred             CeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEEE
Q 020480          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW  206 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~iw  206 (325)
                      ....+++.+++ +++++....+.+++++...          ...+... .......++++.+++. ++++-..+..+..+
T Consensus        58 ~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~----------~~~~~~~-~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~  124 (260)
T d1rwia_          58 QPQGLAVDGAG-TVYVTDFNNRVVTLAAGSN----------NQTVLPF-DGLNYPEGLAVDTQGA-VYVADRGNNRVVKL  124 (260)
T ss_dssp             SCCCEEECTTC-CEEEEETTTEEEEECTTCS----------CCEECCC-CSCCSEEEEEECTTCC-EEEEEGGGTEEEEE
T ss_pred             CceEEEEcCCC-CEEEeeeeeceeeeeeecc----------ceeeeee-eeeeecccccccccce-eEeecccccccccc
Confidence            34678899988 6777766666666655433          1111111 1234678999999887 77776666777777


Q ss_pred             eCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeCCCCC
Q 020480          207 DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILNASFR  286 (325)
Q Consensus       207 d~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~  286 (325)
                      +......     ..... ........++++|++ +++++....+.|..+|......   .......-.....|+++++|.
T Consensus       125 ~~~~~~~-----~~~~~-~~~~~p~~i~~~~~g-~~~v~~~~~~~i~~~d~~~~~~---~~~~~~~~~~p~gi~~d~~g~  194 (260)
T d1rwia_         125 AAGSKTQ-----TVLPF-TGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQ---VVLPFTDITAPWGIAVDEAGT  194 (260)
T ss_dssp             CTTCSSC-----EECCC-CSCCSCCEEEECTTC-CEEEEEGGGTEEEEECTTTCCE---EECCCSSCCSEEEEEECTTCC
T ss_pred             cccccee-----eeeee-cccCCcceeeecCCC-CEeeecccccccccccccccee---eeeeccccCCCccceeeeeee
Confidence            7654321     11111 112345678999987 6888888888999999876542   222223445678899999988


Q ss_pred             c
Q 020480          287 L  287 (325)
Q Consensus       287 ~  287 (325)
                      +
T Consensus       195 l  195 (260)
T d1rwia_         195 V  195 (260)
T ss_dssp             E
T ss_pred             e
Confidence            6

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.22  E-value=0.015  Score=46.23  Aligned_cols=116  Identities=14%  Similarity=0.131  Sum_probs=82.1

Q ss_pred             cCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe--cCCCceEEEEecCCCCCeEEEEeC-C
Q 020480          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR--GHSTEGYGLSWSKFKEGHLLSGSD-D  200 (325)
Q Consensus       124 h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~s~s~-d  200 (325)
                      +......+++.+++ +++++....+.|++|+...           ..+.++.  +......+|++.++++ ++++-.. +
T Consensus       155 ~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~~G-----------~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~  221 (279)
T d1q7fa_         155 HLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEG-----------QYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNN  221 (279)
T ss_dssp             TCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTC-----------CEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSS
T ss_pred             cccccceeeeccce-eEEeeeccccceeeeecCC-----------ceeeeecccccccCCcccccccCCe-EEEEECCCC
Confidence            55667888899888 7888888889999999765           2344442  3455678999999998 6766543 4


Q ss_pred             CcEEEEeCCCCCCCCcccceEeeec--CCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480          201 AQICLWDINAAPKNKSLEAMQIFKV--HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (325)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~  261 (325)
                      +.|.+|+.. +      ..+..+..  .......|++.|++ +++ ++..+..|++|......
T Consensus       222 ~~v~~f~~~-G------~~~~~~~~~~~~~~p~~vav~~dG-~l~-V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         222 FNLTIFTQD-G------QLISALESKVKHAQCFDVALMDDG-SVV-LASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             CEEEEECTT-S------CEEEEEEESSCCSCEEEEEEETTT-EEE-EEETTTEEEEEECSCCC
T ss_pred             cEEEEECCC-C------CEEEEEeCCCCCCCEeEEEEeCCC-cEE-EEeCCCeEEEEEeeeec
Confidence            579999854 3      23444432  23457889999987 455 45678999999987654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.16  E-value=0.0037  Score=51.06  Aligned_cols=120  Identities=10%  Similarity=0.150  Sum_probs=81.0

Q ss_pred             eeEEEecCCCC----cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCC---cEEEec-CCCceEEEEecCCCCCeEEEEeC
Q 020480          128 VNRARYMPQNP----FLIATKTVSAEVYVFDYSKHPSKPPLDGACSP---DLRLRG-HSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       128 v~~v~~~~~~~----~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~---~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      -+.++|+|++.    .++++-+..+.|..|++...       +....   ...+.+ +....-.+++..+|+ ++++...
T Consensus       174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~-------g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~  245 (314)
T d1pjxa_         174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP-------AKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWG  245 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET-------TEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEET
T ss_pred             eeeeEECCCCCcceeEEEEEeecccceEEeeccCc-------cccceeeEEEEccccccccceeeEEecCCc-EEEEEcC
Confidence            46788988753    25566677888998887541       11100   111111 122356799999998 7888888


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~  261 (325)
                      .+.|.+||.+.+.      ....+........+++|.|++..++++.+..|.|.-+++....
T Consensus       246 ~g~I~~~dp~~g~------~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         246 SSHIEVFGPDGGQ------PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             TTEEEEECTTCBS------CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             CCEEEEEeCCCCE------EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            8999999987652      2334444456788999999876688888888988888876443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.04  E-value=0.056  Score=43.78  Aligned_cols=138  Identities=9%  Similarity=0.017  Sum_probs=82.9

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCC----C
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD----A  201 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d----g  201 (325)
                      ..+..++|.++| +++++-...+.|.-|+...          ......+.........+++++++. ++++...+    +
T Consensus        40 ~~lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g----------~~~~~~~~~~~~~p~gla~~~dG~-l~va~~~~~~~~~  107 (319)
T d2dg1a1          40 LQLEGLNFDRQG-QLFLLDVFEGNIFKINPET----------KEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTG  107 (319)
T ss_dssp             CCEEEEEECTTS-CEEEEETTTCEEEEECTTT----------CCEEEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCC
T ss_pred             cCcEeCEECCCC-CEEEEECCCCEEEEEECCC----------CeEEEEEeCCCCCeeEEEECCCCC-EEEEecCCCccce
Confidence            445789999988 6888877889998888765          122233344556788999999987 66665432    3


Q ss_pred             cEEEEeCCCCCCCCcccceEeee--cCCccEEEEEeecCCCcEEEEEec------CCcEEEEEccCCCCCCCeeEeeccC
Q 020480          202 QICLWDINAAPKNKSLEAMQIFK--VHEGVVEDVAWHLRHEYLFGSVGD------DQYLLIWDLRTPSVSKPVQSVVAHQ  273 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~h~  273 (325)
                      .+...+......      .....  .-....+.+.+.++| ++.++...      .+.+..++.....    +..+...-
T Consensus       108 ~i~~~~~~~~~~------~~~~~~~~~~~~~nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg~~----~~~~~~~~  176 (319)
T d2dg1a1         108 GIFAATENGDNL------QDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRT----VTPIIQNI  176 (319)
T ss_dssp             EEEEECTTSCSC------EEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCC----EEEEEEEE
T ss_pred             eEEEEcCCCcee------eeeccCCCcccCCcceeEEecc-ceeecccccccccCcceeEEEecccce----eEEEeecc
Confidence            344444443321      11111  123457889999988 56655432      1224444433322    44433333


Q ss_pred             CCeeEEEeCCCCC
Q 020480          274 SEVGVSILNASFR  286 (325)
Q Consensus       274 ~~v~~i~~~p~~~  286 (325)
                      ...+.|+|+|++.
T Consensus       177 ~~pnGia~s~dg~  189 (319)
T d2dg1a1         177 SVANGIALSTDEK  189 (319)
T ss_dssp             SSEEEEEECTTSS
T ss_pred             ceeeeeeeccccc
Confidence            4568899999986

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.93  E-value=0.027  Score=45.72  Aligned_cols=144  Identities=6%  Similarity=0.012  Sum_probs=86.5

Q ss_pred             CCeeEEEecCCCCcEEEEEec------CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeC
Q 020480          126 GEVNRARYMPQNPFLIATKTV------SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~  199 (325)
                      ...+.+.+.++| +++++-..      .+.+..++...           ..+..+...-.....++|+|++..++++-+.
T Consensus       130 ~~~nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg-----------~~~~~~~~~~~~pnGia~s~dg~~lyvad~~  197 (319)
T d2dg1a1         130 YCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDF-----------RTVTPIIQNISVANGIALSTDEKVLWVTETT  197 (319)
T ss_dssp             CCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTS-----------CCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             cCCcceeEEecc-ceeecccccccccCcceeEEEeccc-----------ceeEEEeeccceeeeeeeccccceEEEeccc
Confidence            346778888888 55555321      12344444332           2233332223345789999999855677778


Q ss_pred             CCcEEEEeCCCCCCCCccc--ceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEee------c
Q 020480          200 DAQICLWDINAAPKNKSLE--AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV------A  271 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~  271 (325)
                      .+.|..|++..........  ..............+++.++| ++.++....+.|.+||. .++   .+..+.      +
T Consensus       198 ~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G-~l~Va~~~~g~V~~~~p-~G~---~l~~i~~P~~~~~  272 (319)
T d2dg1a1         198 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQGRVLVFNK-RGY---PIGQILIPGRDEG  272 (319)
T ss_dssp             GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTTEEEEECT-TSC---EEEEEECTTGGGT
T ss_pred             CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCC-CEEEEEcCCCEEEEECC-CCc---EEEEEeCCCcCCC
Confidence            8999999987543211000  000111112335678999987 78888888999999995 455   255542      2


Q ss_pred             cCCCeeEEEeCCCCC
Q 020480          272 HQSEVGVSILNASFR  286 (325)
Q Consensus       272 h~~~v~~i~~~p~~~  286 (325)
                      +...+++++|.+.+.
T Consensus       273 ~~~~~~~~~~~~~~~  287 (319)
T d2dg1a1         273 HMLRSTHPQFIPGTN  287 (319)
T ss_dssp             CSCBCCEEEECTTSC
T ss_pred             cCceeeeEEEeCCCC
Confidence            344678999988654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.0054  Score=53.05  Aligned_cols=75  Identities=8%  Similarity=-0.070  Sum_probs=48.0

Q ss_pred             CCeeEEEecCCCCcEEEEEe---------cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEE
Q 020480          126 GEVNRARYMPQNPFLIATKT---------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~---------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s  196 (325)
                      -.+....|+|++. .++...         ..+.+.++|+..        +...++.........+....|+|+|. .+|-
T Consensus        61 ~~~~~~~~SpD~~-~vl~~~~~~~~~r~s~~~~~~i~d~~~--------~~~~~l~~~~~~~~~l~~~~wSPDG~-~iaf  130 (465)
T d1xfda1          61 LRAIRYEISPDRE-YALFSYNVEPIYQHSYTGYYVLSKIPH--------GDPQSLDPPEVSNAKLQYAGWGPKGQ-QLIF  130 (465)
T ss_dssp             TTCSEEEECTTSS-EEEEEESCCCCSSSCCCSEEEEEESSS--------CCCEECCCTTCCSCCCSBCCBCSSTT-CEEE
T ss_pred             cccceeEECCCCC-eEEEEEcccceeEeeccccEEEEEccC--------CceeeccCccCCccccceeeeccCCc-eEEE
Confidence            3566778999994 555442         356888999987        22222211122334566789999999 5666


Q ss_pred             EeCCCcEEEEeCCCC
Q 020480          197 GSDDAQICLWDINAA  211 (325)
Q Consensus       197 ~s~dg~i~iwd~~~~  211 (325)
                      .. ++.|.+.+...+
T Consensus       131 v~-~~nl~~~~~~~~  144 (465)
T d1xfda1         131 IF-ENNIYYCAHVGK  144 (465)
T ss_dssp             EE-TTEEEEESSSSS
T ss_pred             Ee-cceEEEEecCCC
Confidence            54 567888887655

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.0025  Score=55.24  Aligned_cols=111  Identities=11%  Similarity=0.114  Sum_probs=68.6

Q ss_pred             EecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec---CCCceEEEEecCCCCCeEEEE---------eC
Q 020480          132 RYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG---HSTEGYGLSWSKFKEGHLLSG---------SD  199 (325)
Q Consensus       132 ~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~p~~~~~l~s~---------s~  199 (325)
                      .|.+++ .++.. ..+|.|.+|++.+        +..  ...+..   ..-.+....|+|++. .++..         +.
T Consensus        23 ~W~~~~-~~~~~-~~~g~i~~~~~~~--------~~~--~~l~~~~~~~~~~~~~~~~SpD~~-~vl~~~~~~~~~r~s~   89 (465)
T d1xfda1          23 KWISDT-EFIYR-EQKGTVRLWNVET--------NTS--TVLIEGKKIESLRAIRYEISPDRE-YALFSYNVEPIYQHSY   89 (465)
T ss_dssp             CBSSSS-CBCCC-CSSSCEEEBCGGG--------CCC--EEEECTTTTTTTTCSEEEECTTSS-EEEEEESCCCCSSSCC
T ss_pred             EEeCCC-cEEEE-eCCCcEEEEECCC--------CCE--EEEEcCccccccccceeEECCCCC-eEEEEEcccceeEeec
Confidence            577766 34433 5678899999876        211  111222   123567788999998 45444         34


Q ss_pred             CCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (325)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~  261 (325)
                      .+.+.++|+.++..    ..+.........+....|+|+|. .+|-. .++.|.+.+...+.
T Consensus        90 ~~~~~i~d~~~~~~----~~l~~~~~~~~~l~~~~wSPDG~-~iafv-~~~nl~~~~~~~~~  145 (465)
T d1xfda1          90 TGYYVLSKIPHGDP----QSLDPPEVSNAKLQYAGWGPKGQ-QLIFI-FENNIYYCAHVGKQ  145 (465)
T ss_dssp             CSEEEEEESSSCCC----EECCCTTCCSCCCSBCCBCSSTT-CEEEE-ETTEEEEESSSSSC
T ss_pred             cccEEEEEccCCce----eeccCccCCccccceeeeccCCc-eEEEE-ecceEEEEecCCCc
Confidence            57889999987643    22222223344566789999985 44443 36678888877655

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.53  E-value=0.0084  Score=47.24  Aligned_cols=99  Identities=5%  Similarity=-0.039  Sum_probs=57.3

Q ss_pred             EecCC--CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEE-EeCCC-----cE
Q 020480          132 RYMPQ--NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS-GSDDA-----QI  203 (325)
Q Consensus       132 ~~~~~--~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s-~s~dg-----~i  203 (325)
                      ..+|+  |. .+|.. .+|.|.+.++..           .....+..+.+.+....|+|+|. .|+. ...++     .|
T Consensus         5 ~~sPdi~G~-~v~f~-~~~dl~~~d~~~-----------g~~~~Lt~~~~~~~~p~~SPDG~-~iaf~~~~~~~~~~~~i   70 (281)
T d1k32a2           5 LLNPDIHGD-RIIFV-CCDDLWEHDLKS-----------GSTRKIVSNLGVINNARFFPDGR-KIAIRVMRGSSLNTADL   70 (281)
T ss_dssp             CEEEEEETT-EEEEE-ETTEEEEEETTT-----------CCEEEEECSSSEEEEEEECTTSS-EEEEEEEESTTCCEEEE
T ss_pred             ccCCCCCCC-EEEEE-eCCcEEEEECCC-----------CCEEEEecCCCcccCEEECCCCC-EEEEEEeeCCCCCceEE
Confidence            45687  84 55543 456899999987           22455667777889999999999 5554 33232     36


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEE
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGS  245 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s  245 (325)
                      .+++...+.......................|+|++. .++.
T Consensus        71 ~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~-~l~~  111 (281)
T d1k32a2          71 YFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN-LIIS  111 (281)
T ss_dssp             EEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC-EEEE
T ss_pred             EEEEecCCceEEeeecCCCccCccccccccccCCCCC-EEEE
Confidence            6667665532100000000111223456778999985 4444

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.32  E-value=0.11  Score=41.32  Aligned_cols=113  Identities=10%  Similarity=0.020  Sum_probs=73.6

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEEE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~i  205 (325)
                      ..-+.+.|++++..++++-+..+.|..|++........  +.........+-.+....+++..+|+ +.++.-..+.|..
T Consensus       148 ~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~--~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~  224 (295)
T d2ghsa1         148 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT--GKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDR  224 (295)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS--SCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEE
T ss_pred             CCcceeeecCCCceEEEeecccceeeEeeecccccccc--cceEEEeccCcccccccceEEcCCCC-EEeeeeCCCceEE
Confidence            45678999999866778878889999998754111100  00000111223345678899999988 7777777889999


Q ss_pred             EeCCCCCCCCcccceEeeecCCccEEEEEee-cCCCcEEEEEec
Q 020480          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWH-LRHEYLFGSVGD  248 (325)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~-p~~~~~l~s~~~  248 (325)
                      ||...       ..+..+.--...+++++|- |+...+++|...
T Consensus       225 ~dp~G-------~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         225 YDTDG-------NHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             ECTTC-------CEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             ecCCC-------cEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            99753       2345554444568999996 555567776654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.17  E-value=0.22  Score=39.61  Aligned_cols=143  Identities=8%  Similarity=0.028  Sum_probs=87.2

Q ss_pred             CeeEEEecCCCCcEEEEEec----CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCc
Q 020480          127 EVNRARYMPQNPFLIATKTV----SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (325)
Q Consensus       127 ~v~~v~~~~~~~~~la~g~~----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~  202 (325)
                      .++.+.+.|+| ++.++...    .+.-.+|.+..        +.   +..+...-.....++|++++..++++-+..+.
T Consensus       104 ~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l~~~~~--------g~---~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~  171 (295)
T d2ghsa1         104 RSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVAK--------GK---VTKLFADISIPNSICFSPDGTTGYFVDTKVNR  171 (295)
T ss_dssp             EEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEET--------TE---EEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             cceeeEECCCC-CEEEEeccccccccceeEeeecC--------Cc---EEEEeeccCCcceeeecCCCceEEEeecccce
Confidence            46788888888 45554322    12334555443        11   12222222345789999999866777788899


Q ss_pred             EEEEeCCCCCCCCc--ccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEE
Q 020480          203 ICLWDINAAPKNKS--LEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSI  280 (325)
Q Consensus       203 i~iwd~~~~~~~~~--~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~  280 (325)
                      |..+++........  ........+.......+++..+| ++.++.-..+.|..||.. ++   .+..+.--...+++++
T Consensus       172 I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~G-nlWva~~~~g~V~~~dp~-G~---~~~~i~lP~~~~T~~~  246 (295)
T d2ghsa1         172 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTD-GN---HIARYEVPGKQTTCPA  246 (295)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTT-CC---EEEEEECSCSBEEEEE
T ss_pred             eeEeeecccccccccceEEEeccCcccccccceEEcCCC-CEEeeeeCCCceEEecCC-Cc---EeeEecCCCCceEEEE
Confidence            99998764322110  01111223344567888999887 677777778889999964 44   2666554345689999


Q ss_pred             eC-CCCC
Q 020480          281 LN-ASFR  286 (325)
Q Consensus       281 ~~-p~~~  286 (325)
                      |- |+..
T Consensus       247 FGG~d~~  253 (295)
T d2ghsa1         247 FIGPDAS  253 (295)
T ss_dssp             EESTTSC
T ss_pred             EeCCCCC
Confidence            95 5543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.28  E-value=0.063  Score=41.83  Aligned_cols=90  Identities=8%  Similarity=0.069  Sum_probs=55.9

Q ss_pred             EecCC--CCCeEEEEeCCCcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCC-----cEEEEEc
Q 020480          185 SWSKF--KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ-----YLLIWDL  257 (325)
Q Consensus       185 ~~~p~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg-----~i~iwd~  257 (325)
                      ..+|+  |. .++-.+ +|.|.+.|+..+.       .+.+..+...+...+|||+|..+..+...++     .|.+++.
T Consensus         5 ~~sPdi~G~-~v~f~~-~~dl~~~d~~~g~-------~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~   75 (281)
T d1k32a2           5 LLNPDIHGD-RIIFVC-CDDLWEHDLKSGS-------TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG   75 (281)
T ss_dssp             CEEEEEETT-EEEEEE-TTEEEEEETTTCC-------EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEET
T ss_pred             ccCCCCCCC-EEEEEe-CCcEEEEECCCCC-------EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEe
Confidence            35677  87 455443 4568888998763       3445667778889999999864444444333     3666666


Q ss_pred             cCCCCCCCeeEee-------ccCCCeeEEEeCCCCCc
Q 020480          258 RTPSVSKPVQSVV-------AHQSEVGVSILNASFRL  287 (325)
Q Consensus       258 ~~~~~~~~~~~~~-------~h~~~v~~i~~~p~~~~  287 (325)
                      ..+..    ..+.       .........+|+|+|+.
T Consensus        76 ~~g~~----~~lt~~~~~~~~~~~~~~~~~~spdg~~  108 (281)
T d1k32a2          76 ENGEI----KRITYFSGKSTGRRMFTDVAGFDPDGNL  108 (281)
T ss_dssp             TTTEE----EECCCCCEEEETTEECSEEEEECTTCCE
T ss_pred             cCCce----EEeeecCCCccCccccccccccCCCCCE
Confidence            66552    2221       11234567889999973

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.66  E-value=1.6  Score=33.56  Aligned_cols=143  Identities=7%  Similarity=-0.056  Sum_probs=85.8

Q ss_pred             CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  204 (325)
                      ...+.+++|.+.+..++.+-...+.|+..++..          ......+......+.++++...+..+..+-...+.|.
T Consensus        35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g----------~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~  104 (263)
T d1npea_          35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG----------GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIE  104 (263)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSS----------CCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCcEEEEEEEeCCCEEEEEECCCCeEEEEEccc----------CCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEE
Confidence            345778899987755666656678898888875          1222223333356788888776664555666778999


Q ss_pred             EEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEcc--CCCCCCCeeEeeccCCCeeEEEeC
Q 020480          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR--TPSVSKPVQSVVAHQSEVGVSILN  282 (325)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~i~~~  282 (325)
                      +.++.....      .......-.....++.+|.+..++.+-...+..+|+-..  ....   .......-...+.|+++
T Consensus       105 ~~~~dg~~~------~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~---~~i~~~~~~~P~glaiD  175 (263)
T d1npea_         105 VAKMDGTQR------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---RILAQDNLGLPNGLTFD  175 (263)
T ss_dssp             EEETTSCSC------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---EEEECTTCSCEEEEEEE
T ss_pred             EEecCCceE------EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc---eeeeeecccccceEEEe
Confidence            999875422      112222335688999999876565554443444555443  3331   22222223456788998


Q ss_pred             CCCC
Q 020480          283 ASFR  286 (325)
Q Consensus       283 p~~~  286 (325)
                      +.+.
T Consensus       176 ~~~~  179 (263)
T d1npea_         176 AFSS  179 (263)
T ss_dssp             TTTT
T ss_pred             ecCc
Confidence            6544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=91.70  E-value=1.4  Score=35.56  Aligned_cols=113  Identities=13%  Similarity=0.048  Sum_probs=66.9

Q ss_pred             ecCCCCcEEEEEecCC-----------eEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeCC
Q 020480          133 YMPQNPFLIATKTVSA-----------EVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDD  200 (325)
Q Consensus       133 ~~~~~~~~la~g~~dg-----------~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~d  200 (325)
                      ...++ ++++.|+.+.           .+.+||...        +......... .|........+.+++. +++.|+.+
T Consensus        27 ~~~~g-kv~v~GG~~~~~~~~~~~~~~~~~~yd~~t--------~~w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~   96 (387)
T d1k3ia3          27 EPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPST--------GIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGND   96 (387)
T ss_dssp             ETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTT--------CCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSS
T ss_pred             EeeCC-EEEEEEeecCcccCCCCCceeEEEEEECCC--------CcEeecCCCCCCcccceeEEEEecCCc-EEEeecCC
Confidence            33445 7888777431           377899987        5554443332 3444455677888887 77777655


Q ss_pred             -CcEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecC------CcEEEEEccCCC
Q 020480          201 -AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD------QYLLIWDLRTPS  261 (325)
Q Consensus       201 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~d------g~i~iwd~~~~~  261 (325)
                       ..+.+||..+..-    .......... .-...+..+++ .+++.|+.+      ..+.+||..+..
T Consensus        97 ~~~~~~yd~~~~~w----~~~~~~~~~r-~~~~~~~~~dG-~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          97 AKKTSLYDSSSDSW----IPGPDMQVAR-GYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             TTCEEEEEGGGTEE----EECCCCSSCC-SSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             CcceeEecCccCcc----cccccccccc-cccceeeecCC-ceeeeccccccccccceeeeecCCCCc
Confidence             5899999887532    1111111111 12234556666 577777643      358899987753

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.88  E-value=2.7  Score=32.33  Aligned_cols=149  Identities=9%  Similarity=-0.003  Sum_probs=84.1

Q ss_pred             eccCCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEeCCC
Q 020480          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (325)
Q Consensus       122 ~~h~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg  201 (325)
                      +.....+.++.|.+....++.+=...+.|.-.++....      ........+......+.++++.+.+..+..+-...+
T Consensus        26 ~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~------~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~   99 (266)
T d1ijqa1          26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH------GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG   99 (266)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred             eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCC------CCcceEEEEeCCCCCcceEEEeeccceEEEEecCCC
Confidence            34556677899998775555554556777766665310      001111222222345667887766665666667778


Q ss_pred             cEEEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEe-cCCcEEEEEccCCCCCCCeeEe-eccCCCeeEE
Q 020480          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DDQYLLIWDLRTPSVSKPVQSV-VAHQSEVGVS  279 (325)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~i  279 (325)
                      .|.+.++....      ..............++.+|....++.+.. ..+.|.-.++....    ...+ ...-...+.+
T Consensus       100 ~I~v~~~~g~~------~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~----~~~l~~~~~~~p~gl  169 (266)
T d1ijqa1         100 TVSVADTKGVK------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----IYSLVTENIQWPNGI  169 (266)
T ss_dssp             EEEEEETTSSS------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC----EEEEECSSCSCEEEE
T ss_pred             EEEeEecCCce------EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc----eecccccccceeeEE
Confidence            99999988642      22233444556788999986545554432 33455555554433    3333 2223456788


Q ss_pred             EeCCCCC
Q 020480          280 ILNASFR  286 (325)
Q Consensus       280 ~~~p~~~  286 (325)
                      ++++.+.
T Consensus       170 ~iD~~~~  176 (266)
T d1ijqa1         170 TLDLLSG  176 (266)
T ss_dssp             EEETTTT
T ss_pred             Eeecccc
Confidence            8887543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.44  E-value=3.5  Score=31.55  Aligned_cols=137  Identities=6%  Similarity=-0.074  Sum_probs=81.8

Q ss_pred             CCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceEEEEecCCCCCeEEEEeCCCcEE
Q 020480          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (325)
Q Consensus       126 ~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg~i~  204 (325)
                      ..+..+++...+.++..+-...+.|.+.++..        .  . ...+. ........++.+|....++.+-...+..+
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg--------~--~-~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~  147 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG--------T--Q-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPK  147 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------C--S-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCE
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCC--------c--e-EEEEecccccCCcEEEEecccCcEEEeecCCCCcE
Confidence            56778888876656666767778999999876        1  1 22232 33357889999998773444433333334


Q ss_pred             EE--eCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCCCCCCeeEeeccCCCeeEEEeC
Q 020480          205 LW--DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVGVSILN  282 (325)
Q Consensus       205 iw--d~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~~  282 (325)
                      |+  ++....      ........-.....+++.+.+..++.+-...+.|...|+.....   ...+.+. ....+|++.
T Consensus       148 I~r~~~dG~~------~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~---~~v~~~~-~~P~~lav~  217 (263)
T d1npea_         148 IETSHMDGTN------RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR---RKVLEGL-QYPFAVTSY  217 (263)
T ss_dssp             EEEEETTSCC------CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE---EEEEECC-CSEEEEEEE
T ss_pred             EEEecCCCCC------ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCe---EEEECCC-CCcEEEEEE
Confidence            44  554321      11122222345678999987765666666788899999876542   1222222 234567776


Q ss_pred             C
Q 020480          283 A  283 (325)
Q Consensus       283 p  283 (325)
                      .
T Consensus       218 ~  218 (263)
T d1npea_         218 G  218 (263)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.19  E-value=4.3  Score=31.02  Aligned_cols=121  Identities=10%  Similarity=-0.041  Sum_probs=78.1

Q ss_pred             CCCeeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceEEEEecCCCCCeEEEEe-CCCcE
Q 020480          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-DDAQI  203 (325)
Q Consensus       125 ~~~v~~v~~~~~~~~~la~g~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i  203 (325)
                      ...+..+++.+.+.++..+-...+.|.+.++..          ......+........+++.+|....++.+-. ..+.|
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g----------~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I  145 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG----------VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI  145 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTS----------SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCC----------ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcce
Confidence            355677888876667777777788999999876          1222234444567889999987663444432 33456


Q ss_pred             EEEeCCCCCCCCcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEEEEccCCC
Q 020480          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (325)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~  261 (325)
                      ...++....      ........-.....+++.+.+..+..+-...+.|...++....
T Consensus       146 ~r~~~dGs~------~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         146 KKGGLNGVD------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             EEEETTSCC------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             eEeccCCCc------eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence            666665431      1112222334578899998776666666778899999987654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=86.55  E-value=7.2  Score=32.23  Aligned_cols=78  Identities=13%  Similarity=0.068  Sum_probs=53.3

Q ss_pred             ceEEEEecCCCCCeEEEEeCCCcEEEEeCCCCCCC-----CcccceEeeecCCccEEEEEeecCCCcEEEEEecCCcEEE
Q 020480          180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-----KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI  254 (325)
Q Consensus       180 ~v~~l~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~~~dg~i~i  254 (325)
                      ..+.+..+|+|...++++..+.++.|+|++.-...     ..-..+..-......-...+|...| +...|---|..|.-
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g-~aytslfids~v~k  354 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVK  354 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEE
T ss_pred             CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCc-eEEEEeeccceEEE
Confidence            35789999999977888889999999998642110     0001111112234456678888876 66667778999999


Q ss_pred             EEcc
Q 020480          255 WDLR  258 (325)
Q Consensus       255 wd~~  258 (325)
                      |++.
T Consensus       355 w~~~  358 (459)
T d1fwxa2         355 WNIE  358 (459)
T ss_dssp             EEHH
T ss_pred             Eecc
Confidence            9985

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=85.59  E-value=8.6  Score=31.78  Aligned_cols=71  Identities=7%  Similarity=-0.107  Sum_probs=43.9

Q ss_pred             EEEEEeecCCCcEEEEEecCCcEEEEEccCCCC-----CCCeeEe---eccCCCeeEEEeCCCCCc--cCCCCceEEeee
Q 020480          230 VEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-----SKPVQSV---VAHQSEVGVSILNASFRL--SHEDTCTCTHRH  299 (325)
Q Consensus       230 v~~v~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~---~~h~~~v~~i~~~p~~~~--~~~~d~~~~~~~  299 (325)
                      ...+..+|+|..+++++.-+.++.|+|++....     ..+-..+   ....-.-...+|+..|..  +---|..+.-|+
T Consensus       277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~  356 (459)
T d1fwxa2         277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWN  356 (459)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEe
Confidence            456788999988888888999999999974211     0011111   112223455678887753  223566666676


Q ss_pred             c
Q 020480          300 S  300 (325)
Q Consensus       300 ~  300 (325)
                      +
T Consensus       357 ~  357 (459)
T d1fwxa2         357 I  357 (459)
T ss_dssp             H
T ss_pred             c
Confidence            5