Citrus Sinensis ID: 020495

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MGKKRKHTEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVLSFLLHFERKSLCSICIVDKIVLKTLMDSLGTSRMSLDMLGYVVGTIFCYFY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHcccccccHHHcccccccccccccEEEEEccccccHHHHHHHHHHHHcccccccccHHccccccHHHHHHHHHHccccEEEEEEEEcccccEEEEEEcccccEEEEEEEcEEEccccccccccccccccEEEEcccccccHHHHHHHHHHHHccccccccccccccccEEEEEEEEccEEEEEEEEEEcccccccccccccccccEEEEEcccEEEEEEEEEccccccccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccEEEEEEcccccEEEEEEcccccccEEEEEEEcccHHHHccccccccccccEEEccccccccHHHHHHHHHHHHHHccccccccccccEcEEEEEEEEccEEEEEEEEEEEccccccccccccccccEEEEEcccEEEEEEEEEcccccccEEEEccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccHccHHHHHHEEEEEEEEEc
Coil and Loop (DISEMBL)
mgkkrkhteiieptkkddsvteerpkrtllgwkdkieiketeapgvfrnkeKVLVTCSRRINFRYRHLMLNVVSllphckkdnkveaksskgaTLNELVELkscssclffecrkHKDLYLWmakspngpsvKFLVNAVHTMEELKLTGnhlkasrplltfssnfgkDAHWKLIKEMIIQIfgtpkehrkskpyhdhvfVFSIVddhiwfrnyqitvphnesdkvarggldkmtlvevgprfclnpikifggsfggptlyenpfyvspnQVRKVLSFLLHFERKSLCSICIVDKIVLKTLMDSLGTSRMSLDMLGYVVGTIFCYFY
Flexible Loop (DISEMBL)
mgkkrkhteiieptkkddsvteerpkrtllgwkdkieiketeapgvfrnkekvLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQItvphnesdkvargGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVLSFLLHFERKSLCSICIVDKIVLKTLMDSLGTSRMSLDMLGYVVGTIFCYFY
Low Complexity Region (SEG)
MGKKRKHTEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVLSFLLHFERKSLCSICIVDKIVLKTLMDSLGTSRMSLDMLGYVVGTIFCYFY
Disordered region (IsUnstruct)
****************************LLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKK***********ATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVLSFLLHFERKSLCSICIVDKIVLKTLMDSLGTSRMSLDMLGYVVGTIFCYF*
Disordered Region (DISOPRED)
***K*******************************************RNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEEL*********SRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITV****************TLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQ*********************************************YVVGTIFCYFY
Disordered Region (DISEMBL)
*************************KRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKD********KGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVLSFLLHFERKSLCSICIVDKIVLKTLMDSLGTSRMSLDMLGYVVGTIFCYFY
Disordered Region (DISPRO)
*********************************************VFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNES******GLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVLSFLLHFERKSLCSICIVDKIVLKTLMDSLGTSRMSLDMLGYVVGTIFCYFY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKKRKHTEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVLSFLLHFERKSLCSICIVDKIVLKTLMDSLGTSRMSLDMLGYVVGTIFCYFY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
Q3SZZ0	353	Ribosome biogenesis prote	yes	no	0.664	0.611	0.534	4e-68
Q8TDN6	353	Ribosome biogenesis prote	yes	no	0.664	0.611	0.534	6e-68
Q8UVY2	339	Ribosome biogenesis prote	N/A	no	0.726	0.696	0.488	6e-68
Q9DCA5	353	Ribosome biogenesis prote	yes	no	0.744	0.685	0.494	9e-68
Q4QQT6	352	Ribosome biogenesis prote	yes	no	0.664	0.613	0.534	1e-67
Q5RAN2	353	Ribosome biogenesis prote	yes	no	0.744	0.685	0.490	3e-67
Q08235	291	Ribosome biogenesis prote	yes	no	0.806	0.900	0.462	2e-64
P34524	352	Ribosome biogenesis prote	yes	no	0.655	0.605	0.486	8e-59
Q9HGL6	295	Ribosome biogenesis prote	yes	no	0.667	0.735	0.475	9e-58
Q54JN0	326	Ribosome biogenesis prote	yes	no	0.652	0.650	0.481	6e-57

>sp|Q3SZZ0|BRX1_BOVIN Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1 PE=2 SV=1

 Score =  258 bits (660), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 123/230 (53%), Positives = 165/230 (71%), Gaps = 14/230 (6%)

Query: 45  GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
           G ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C
Sbjct: 54  GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNC 112

Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
           + C++FE +K +DLY+W++ SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 172

Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
            +  H+ L+KE++IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D  
Sbjct: 173 DELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED-- 226

Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVL 274
                    LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN  R+V+
Sbjct: 227 -------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVI 269

Required for biogenesis of the 60S ribosomal subunit.
Bos taurus (taxid: 9913)

>sp|Q8TDN6|BRX1_HUMAN Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1 PE=1 SV=2

 Score =  258 bits (658), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 123/230 (53%), Positives = 165/230 (71%), Gaps = 14/230 (6%)

Query: 45  GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
           G ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C
Sbjct: 54  GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNC 112

Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
           + C++FE +K +DLY+W++ SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 172

Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
            +  H+ L+KE++IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D  
Sbjct: 173 DELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED-- 226

Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVL 274
                    LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN  R+V+
Sbjct: 227 -------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVI 269

Required for biogenesis of the 60S ribosomal subunit.

Homo sapiens (taxid: 9606)

>sp|Q8UVY2|BRX1_XENLA Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis GN=brix1 PE=2 SV=1

 Score =  257 bits (657), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 122/250 (48%), Positives = 170/250 (68%), Gaps = 14/250 (5%)

Query: 45  GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
           G ++NKE+VL+  SR INFR RHLM ++ SL+PH + + K++ K  K   +NE+ E+K+C
Sbjct: 47  GKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKD-KLFVVNEVCEMKNC 105

Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
           + C++FE +K +DLY+W++ SP GPS KFLV  +HT+ ELK++GN LK SRP+L+F   F
Sbjct: 106 NKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAF 165

Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
            ++  + L+KE++ QIFGTP+ H +S+P+ DH+F FSI D+ IWFRNYQI     E D  
Sbjct: 166 DREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII----EED-- 219

Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVLSFLLHFERKS 284
                    LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN  R+++      + K 
Sbjct: 220 -------AALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATAAKVKE 272

Query: 285 LCSICIVDKI 294
              +  V K+
Sbjct: 273 KQQVKEVQKL 282

Required for biogenesis of the 60S ribosomal subunit.

Xenopus laevis (taxid: 8355)

>sp|Q9DCA5|BRX1_MOUSE Ribosome biogenesis protein BRX1 homolog OS=Mus musculus GN=Brix1 PE=2 SV=3

 Score =  257 bits (656), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 128/259 (49%), Positives = 176/259 (67%), Gaps = 17/259 (6%)

Query: 45  GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
           G ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C
Sbjct: 54  GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNC 112

Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
           + C++FE +K +DLY+W++ SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 172

Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
               H+ L+KE +IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D  
Sbjct: 173 DDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED-- 226

Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVLSFLL---HFE 281
                    LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN  R+V+  +    + E
Sbjct: 227 -------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYRE 279

Query: 282 RKSLCSICIVDKIVLKTLM 300
           R+ +  +  + K   KT++
Sbjct: 280 RQQVKDVQKLRKKEPKTIL 298

Required for biogenesis of the 60S ribosomal subunit.

Mus musculus (taxid: 10090)

>sp|Q4QQT6|BRX1_RAT Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus GN=Brix1 PE=2 SV=1

 Score =  256 bits (655), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 123/230 (53%), Positives = 163/230 (70%), Gaps = 14/230 (6%)

Query: 45  GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
           G ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C
Sbjct: 53  GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNC 111

Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
           + C++FE +K +DLY+W++ SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F
Sbjct: 112 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 171

Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
               H+ L+KE +IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D  
Sbjct: 172 DDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED-- 225

Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVL 274
                    LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN  R+V+
Sbjct: 226 -------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVV 268

Required for biogenesis of the 60S ribosomal subunit.

Rattus norvegicus (taxid: 10116)

>sp|Q5RAN2|BRX1_PONAB Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1 PE=2 SV=1

 Score =  255 bits (651), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 127/259 (49%), Positives = 177/259 (68%), Gaps = 17/259 (6%)

Query: 45  GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
           G ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C
Sbjct: 54  GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNC 112

Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
           + C++FE +K +DLY+W++ SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 172

Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
            +  H+ L+KE++IQI  TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D  
Sbjct: 173 DELPHYALLKELLIQILSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED-- 226

Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKV---LSFLLHFE 281
                    LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN  R+V   ++   + E
Sbjct: 227 -------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVTRSITAAKYRE 279

Query: 282 RKSLCSICIVDKIVLKTLM 300
           ++ +  +  + K   KTL+
Sbjct: 280 KQQVKDVQKLRKKEPKTLL 298

Required for biogenesis of the 60S ribosomal subunit.

Pongo abelii (taxid: 9601)

>sp|Q08235|BRX1_YEAST Ribosome biogenesis protein BRX1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRX1 PE=1 SV=2

 Score =  246 bits (627), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 124/268 (46%), Positives = 171/268 (63%), Gaps = 6/268 (2%)

Query: 47  FRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSS 106
           F NK++ L+  SR +N+R+RHL+ ++  LLPH +K+ K++ K      LNE+ EL +C++
Sbjct: 27  FMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKDL-QQLNEIAELYNCNN 85

Query: 107 CLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGK 166
            LFFE RKH+DLYLW++K PNGP++KF +  +HTM+EL  TGN LK SRP+L+F   F  
Sbjct: 86  VLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTGNCLKGSRPVLSFDQRFES 145

Query: 167 DAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVA- 225
             H++LIKE+++  FG P   RKSKP+ DHV  FSIVDD IW R Y+I+  H+  +K   
Sbjct: 146 SPHYQLIKELLVHNFGVPPNARKSKPFIDHVMSFSIVDDKIWVRTYEIS--HSTKNKEEY 203

Query: 226 RGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVLSFLLHFERKSL 285
             G + ++LVE+GPRF +  I I  GSFGGP +YEN  YVSPN VR  +      E KS 
Sbjct: 204 EDGEEDISLVEIGPRFVMTVILILEGSFGGPKIYENKQYVSPNVVRAQIKQQAAEEAKSR 263

Query: 286 CSICIVDKIVLKTLMDSLGTSRMSLDML 313
               +  KI  K   + L    +S D L
Sbjct: 264 AEAAVERKI--KRRENVLAADPLSNDAL 289

Required for biogenesis of the 60S ribosomal subunit.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P34524|BRX1_CAEEL Ribosome biogenesis protein BRX1 homolog OS=Caenorhabditis elegans GN=K12H4.3 PE=3 SV=1

 Score =  227 bits (579), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 111/228 (48%), Positives = 155/228 (67%), Gaps = 15/228 (6%)

Query: 46  VFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCS 105
           ++ N+E+VLV CSR  + R R+LM ++  LLPH K D+K++ + S    LNE+ E+K+C+
Sbjct: 58  LWTNRERVLVLCSRGADVRTRYLMKDIKDLLPHAKGDSKLDQQKSLN-VLNEIAEMKNCT 116

Query: 106 SCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFG 165
             ++FE RK KD YLWM+    GPS+KFLV+ VHTM+ELK++GN L+ASRP+L+F   F 
Sbjct: 117 KVMYFESRKRKDTYLWMSNVEKGPSIKFLVHNVHTMKELKMSGNCLRASRPVLSFDDAFD 176

Query: 166 KDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVD-DHIWFRNYQITVPHNESDKV 224
           K    KLIK +++Q  GTP  H +S+P+ DHVF FS+ + D IWFRN+QI    +ES   
Sbjct: 177 KKPQLKLIKAVLMQTLGTPHHHPRSQPFVDHVFNFSVGEGDKIWFRNFQIV---DES--- 230

Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRK 272
                  + L EVGPRF L  +++F GSF G  LY+NP YVSPN +R+
Sbjct: 231 -------LQLQEVGPRFVLEMVRLFAGSFEGAVLYDNPNYVSPNVIRR 271

Required for biogenesis of the 60S ribosomal subunit.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9HGL6|BRX1_SCHPO Ribosome biogenesis protein brx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brx1 PE=3 SV=1

 Score =  224 bits (570), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 107/225 (47%), Positives = 152/225 (67%), Gaps = 8/225 (3%)

Query: 50  KEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLF 109
           K+KVLV  SR + +R RHL+ ++VS++PH KKD+K+++K  +   LNEL EL +C++  F
Sbjct: 42  KQKVLVLSSRGVTYRQRHLLNDLVSMMPHSKKDSKLDSKD-RLYQLNELAELYNCNNIFF 100

Query: 110 FECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAH 169
           FE R+ +DLYL +A++PNGP+VKF V  +HTM+EL +TGN LK SRP+L+F   F    H
Sbjct: 101 FESRRREDLYLHIARAPNGPTVKFHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAPH 160

Query: 170 WKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGL 229
            K++KE++ Q FG PK  R+SKP+ D V   +I D  IWFRNY+I    ++S        
Sbjct: 161 LKVVKELLQQTFGIPKGARRSKPFIDRVCTLTIADGKIWFRNYEIRENEDKSK------- 213

Query: 230 DKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVL 274
           D +TL+E+GPRF +  I I  GSFGGP +Y+N  +VS   VR  +
Sbjct: 214 DPVTLIEIGPRFVMTIINILEGSFGGPVIYKNDTFVSSTMVRAAI 258

Required for biogenesis of the 60S ribosomal subunit.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54JN0|BRX1_DICDI Ribosome biogenesis protein BRX1 homolog OS=Dictyostelium discoideum GN=bxdc2 PE=3 SV=1

 Score =  221 bits (563), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 107/222 (48%), Positives = 147/222 (66%), Gaps = 10/222 (4%)

Query: 50  KEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLF 109
           K++VL T +R I  +YRHLM +++SL+PH KK++K++ + +  + +NE  E+KSC+  + 
Sbjct: 74  KKRVLFTSTRGIGSKYRHLMADLISLIPHSKKEDKIDDRKTL-SLINETCEMKSCNYAIL 132

Query: 110 FECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAH 169
           F+ RK  D +LWMAK+P GP+VKF +  VHT++EL++TGN LK SRP L F  +F  + H
Sbjct: 133 FDVRKGTDCFLWMAKTPLGPTVKFHITNVHTLDELQMTGNCLKGSRPFLHFDKSFDSEVH 192

Query: 170 WKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGL 229
            +LIKE+I QI+ TPK H KSKP+ DHVF F   D  IWFRNYQI+    + D +     
Sbjct: 193 LQLIKELITQIYSTPKGHVKSKPFFDHVFSFFYQDGRIWFRNYQISDQEFKKDSL----- 247

Query: 230 DKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVR 271
               L E+GPR  ++  KIF   FGG  LY NP YVSPN  R
Sbjct: 248 ----LTEIGPRMIMHIDKIFSDGFGGSVLYSNPNYVSPNNTR 285

Required for biogenesis of the 60S ribosomal subunit.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
255577729	312	ribosome biogenesis protein brix, putati	0.833	0.868	0.861	1e-138
224117214	317	predicted protein [Populus trichocarpa]	0.836	0.858	0.845	1e-136
224128370	317	predicted protein [Populus trichocarpa]	0.836	0.858	0.842	1e-135
297834412	315	brix domain-containing protein [Arabidop	0.836	0.863	0.840	1e-134
18400776	315	ribosomal RNA processing brix domain-con	0.836	0.863	0.818	1e-131
147801502	316	hypothetical protein VITISV_011736 [Viti	0.836	0.860	0.816	1e-131
16648689	315	AT3g15460/MJK13_12 [Arabidopsis thaliana	0.836	0.863	0.815	1e-131
225437949	316	PREDICTED: ribosome biogenesis protein B	0.836	0.860	0.816	1e-131
297847680	320	brix domain-containing protein [Arabidop	0.84	0.853	0.802	1e-131
18404250	320	Ribosomal RNA processing Brix domain pro	0.84	0.853	0.795	1e-130

>gi|255577729|ref|XP_002529740.1| ribosome biogenesis protein brix, putative [Ricinus communis] gi|223530781|gb|EEF32647.1| ribosome biogenesis protein brix, putative [Ricinus communis]

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/275 (86%), Positives = 252/275 (91%), Gaps = 4/275 (1%)

Query: 1   MGKKRKH--TEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCS 58
           MGKKRKH  TE+  P KKD+S  E RPKRTLLGWKDK E+K TE  G FRNKEKVLVTCS
Sbjct: 1   MGKKRKHSETEVAAPEKKDESAAE-RPKRTLLGWKDKSEVKPTETQG-FRNKEKVLVTCS 58

Query: 59  RRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDL 118
           RRIN+RYRHLMLN+VSLLPHCKKDNKVE+KSSKG  LNELVELK  SSCLFFECRKHKDL
Sbjct: 59  RRINYRYRHLMLNIVSLLPHCKKDNKVESKSSKGMALNELVELKGSSSCLFFECRKHKDL 118

Query: 119 YLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMII 178
           YLWMAK P GPSVKFLVNAVHTMEELKLTGNHLK SRP+LTFS+NF KDAHWKL+KEM++
Sbjct: 119 YLWMAKCPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSANFDKDAHWKLLKEMLM 178

Query: 179 QIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVG 238
           QIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDKV RGGLDKMTLVEVG
Sbjct: 179 QIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVVRGGLDKMTLVEVG 238

Query: 239 PRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKV 273
           PRFCLNPIKIFGGSFGGPTLYENPFY+SPNQ+R +
Sbjct: 239 PRFCLNPIKIFGGSFGGPTLYENPFYISPNQIRAL 273

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117214|ref|XP_002317510.1| predicted protein [Populus trichocarpa] gi|222860575|gb|EEE98122.1| predicted protein [Populus trichocarpa]

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 236/279 (84%), Positives = 258/279 (92%), Gaps = 7/279 (2%)

Query: 1   MGKKRKH--TEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEA----PGVFRNKEKVL 54
           MGKKRKH  T++IEP KKD+S TE RPKRTLLGWKDK E KETE+     G FRNKEKVL
Sbjct: 1   MGKKRKHSETQVIEPAKKDESETE-RPKRTLLGWKDKPEEKETESLPPHQGGFRNKEKVL 59

Query: 55  VTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRK 114
           VTCSRRIN+RYRHLMLN+VSLLPHCKKD+KVE+ SSKGATLNELVELK+CSS LFFECRK
Sbjct: 60  VTCSRRINYRYRHLMLNLVSLLPHCKKDSKVESTSSKGATLNELVELKNCSSSLFFECRK 119

Query: 115 HKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIK 174
           HKDLYLWM K P+GPSVKFLVNAVHTMEELKLTGNHLK SRPLLTFS+NF KDAHWKL+K
Sbjct: 120 HKDLYLWMVKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSANFDKDAHWKLLK 179

Query: 175 EMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTL 234
           EMIIQIFG PK+HRKSKP++DHVFVFSIVDDHIWFRNYQI+VPHNE+DK+ARGGLDKMTL
Sbjct: 180 EMIIQIFGIPKDHRKSKPFYDHVFVFSIVDDHIWFRNYQISVPHNETDKMARGGLDKMTL 239

Query: 235 VEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKV 273
           VEVGPRFCLNPIKIFGGSFGGPTLYENPF++SPNQ+R +
Sbjct: 240 VEVGPRFCLNPIKIFGGSFGGPTLYENPFFISPNQIRAL 278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128370|ref|XP_002329145.1| predicted protein [Populus trichocarpa] gi|222869814|gb|EEF06945.1| predicted protein [Populus trichocarpa]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 235/279 (84%), Positives = 256/279 (91%), Gaps = 7/279 (2%)

Query: 1   MGKKRKH--TEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETE----APGVFRNKEKVL 54
           MGKKRKH  T++IEP KKD+   E RPKRTLLGWKDK E+KETE      G FRNKEKVL
Sbjct: 1   MGKKRKHVETQVIEPAKKDEGAPE-RPKRTLLGWKDKPEVKETEFIPPQQGGFRNKEKVL 59

Query: 55  VTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRK 114
           VTCSRRINFRYRHLMLN+VSLLPHCKKD+KVE+ S+KGATLNELVELK+ SS LFFECRK
Sbjct: 60  VTCSRRINFRYRHLMLNLVSLLPHCKKDSKVESTSTKGATLNELVELKNGSSSLFFECRK 119

Query: 115 HKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIK 174
           HKDLYLWM K P+GPSVKFLVNAVHTMEELKLTGNHLK SRPLLTFS+NF KDAHWKL+K
Sbjct: 120 HKDLYLWMVKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSANFDKDAHWKLLK 179

Query: 175 EMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTL 234
           EMIIQIFGTPK+HRKSKP++DHVFVFSIVDDHIWFRNYQI+VPHNE+DK+ARGGLDKMTL
Sbjct: 180 EMIIQIFGTPKDHRKSKPFYDHVFVFSIVDDHIWFRNYQISVPHNETDKIARGGLDKMTL 239

Query: 235 VEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKV 273
           VEVGPRFCLNPIKIFGGSFGGPTLYENPF+VSPNQ+R +
Sbjct: 240 VEVGPRFCLNPIKIFGGSFGGPTLYENPFFVSPNQIRAL 278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834412|ref|XP_002885088.1| brix domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330928|gb|EFH61347.1| brix domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/276 (84%), Positives = 249/276 (90%), Gaps = 4/276 (1%)

Query: 1   MGKKRKHTEIIE--PTKKDDSVTEERPKRTLLGWKDKIEIKETEAPG-VFRNKEKVLVTC 57
           MG+KRKH+E +   P KKDDS  E RPKRTLLGWKDK E  E   P  VFRNKEKVLVTC
Sbjct: 1   MGRKRKHSETVAAAPVKKDDSAPE-RPKRTLLGWKDKNEDAEDSKPASVFRNKEKVLVTC 59

Query: 58  SRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKD 117
           SRRI+FRYRHLMLN+VSLLPHCKKD+KVEAKSS+GATLNEL+ELK  SSCLFFECRKHKD
Sbjct: 60  SRRISFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHKD 119

Query: 118 LYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMI 177
           LY+WM KSP GPSVKFLVNAVHTMEELKLTGNHLK SRPLLTFSSNF KDAHWKL+KEM+
Sbjct: 120 LYMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAHWKLLKEML 179

Query: 178 IQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEV 237
            QIFG P+ HRKSKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ARG LDKMTL+EV
Sbjct: 180 TQIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIEV 239

Query: 238 GPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKV 273
           GPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQ+R +
Sbjct: 240 GPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRAL 275

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400776|ref|NP_566514.1| ribosomal RNA processing brix domain-containing protein [Arabidopsis thaliana] gi|7021731|gb|AAF35412.1| unknown protein [Arabidopsis thaliana] gi|15795111|dbj|BAB02375.1| unnamed protein product [Arabidopsis thaliana] gi|21592419|gb|AAM64370.1| unknown [Arabidopsis thaliana] gi|332642158|gb|AEE75679.1| ribosomal RNA processing brix domain-containing protein [Arabidopsis thaliana]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/276 (81%), Positives = 243/276 (88%), Gaps = 4/276 (1%)

Query: 1   MGKKRKHTEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPG---VFRNKEKVLVTC 57
           MG+KRKH+E +      DS  E RP+RTLLGWKDK E  E   P    VFRNKEKVLVTC
Sbjct: 1   MGRKRKHSETVTAAPVKDSAPE-RPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVTC 59

Query: 58  SRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKD 117
           SRRINFRYRHLMLN+VSLLPHCKKD+KVEAKSS+GATLNEL+ELK  SSCLFFECRKHKD
Sbjct: 60  SRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHKD 119

Query: 118 LYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMI 177
           LY+WM KSP GPSVKFLVNAVHTMEELKLTGNHLK SRPLLTFSSNF  DAHWKL+KEM+
Sbjct: 120 LYMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEML 179

Query: 178 IQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEV 237
            QIFG P+ HRKSKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ARG LDKMTL+EV
Sbjct: 180 TQIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIEV 239

Query: 238 GPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKV 273
           GPRFCLNPIKIFGGSFGG TLYENPFYVSPNQ+R +
Sbjct: 240 GPRFCLNPIKIFGGSFGGTTLYENPFYVSPNQIRAL 275

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801502|emb|CAN61504.1| hypothetical protein VITISV_011736 [Vitis vinifera]

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/278 (81%), Positives = 250/278 (89%), Gaps = 6/278 (2%)

Query: 1   MGKKRKHTE--IIEPTKKDDSVTEERPKRTLLGWKDKI--EIKETEAPG-VFRNKEKVLV 55
           MGKKRKH+E  + EP KKD S   ERPKRTLLGWKD    E KETE+   +FRNKEKVLV
Sbjct: 1   MGKKRKHSEANVAEPPKKD-SDAPERPKRTLLGWKDPTPTETKETESSSPIFRNKEKVLV 59

Query: 56  TCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKH 115
           TCSRRI++RYRHLML++VSLLPH KKDNKVE+K SKGATLNELVELK+CSSCLFFECRK 
Sbjct: 60  TCSRRISYRYRHLMLSIVSLLPHAKKDNKVESKESKGATLNELVELKNCSSCLFFECRKQ 119

Query: 116 KDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKE 175
           KDLYLWMAK P+GPSVKF+V+AVHTMEELKLTGNHLK SRPLLTFS+NF KD HWKL+KE
Sbjct: 120 KDLYLWMAKCPSGPSVKFMVDAVHTMEELKLTGNHLKGSRPLLTFSTNFDKDPHWKLLKE 179

Query: 176 MIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLV 235
           MI QIFGTPKEHRK+KPYHDHVF FS+ DDHIWFRNYQI+VPHNESDKV RGGLDK+TLV
Sbjct: 180 MITQIFGTPKEHRKAKPYHDHVFAFSLADDHIWFRNYQISVPHNESDKVDRGGLDKITLV 239

Query: 236 EVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKV 273
           EVGPRFCLNPIKIFGGSFGGPTLYENPFY+SPN++R +
Sbjct: 240 EVGPRFCLNPIKIFGGSFGGPTLYENPFYISPNEIRAL 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16648689|gb|AAL25537.1| AT3g15460/MJK13_12 [Arabidopsis thaliana] gi|23505881|gb|AAN28800.1| At3g15460/MJK13_12 [Arabidopsis thaliana]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 225/276 (81%), Positives = 243/276 (88%), Gaps = 4/276 (1%)

Query: 1   MGKKRKHTEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPG---VFRNKEKVLVTC 57
           MG+KRKH+E +      DS  E RP+RTLLGWKDK E  E   P    VFRNKEKVLVTC
Sbjct: 1   MGRKRKHSETVTAAPVKDSAPE-RPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVTC 59

Query: 58  SRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKD 117
           SRRINFRYRHLMLN+VSLLPHCKKD+KVEAKSS+GATLNEL+ELK  SSCLFFECRKHKD
Sbjct: 60  SRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHKD 119

Query: 118 LYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMI 177
           LY+WM KSP GPSVKFLVNAVHTMEELK+TGNHLK SRPLLTFSSNF  DAHWKL+KEM+
Sbjct: 120 LYMWMVKSPGGPSVKFLVNAVHTMEELKVTGNHLKGSRPLLTFSSNFENDAHWKLLKEML 179

Query: 178 IQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEV 237
            QIFG P+ HRKSKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ARG LDKMTL+EV
Sbjct: 180 TQIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIEV 239

Query: 238 GPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKV 273
           GPRFCLNPIKIFGGSFGG TLYENPFYVSPNQ+R +
Sbjct: 240 GPRFCLNPIKIFGGSFGGTTLYENPFYVSPNQIRAL 275

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437949|ref|XP_002270029.1| PREDICTED: ribosome biogenesis protein BRX1 homolog [Vitis vinifera] gi|297744237|emb|CBI37207.3| unnamed protein product [Vitis vinifera]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/278 (81%), Positives = 249/278 (89%), Gaps = 6/278 (2%)

Query: 1   MGKKRKHTE--IIEPTKKDDSVTEERPKRTLLGWKDKI--EIKETEAPG-VFRNKEKVLV 55
           MGKKRKH+E  + EP KKD S   ERPKRTLLGWKD    E KE E+   +FRNKEKVLV
Sbjct: 1   MGKKRKHSEANVAEPPKKD-SDAPERPKRTLLGWKDPTPTETKEIESSSPIFRNKEKVLV 59

Query: 56  TCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKH 115
           TCSRRI++RYRHLML++VSLLPH KKDNKVE+K SKGATLNELVELK+CSSCLFFECRK 
Sbjct: 60  TCSRRISYRYRHLMLSIVSLLPHAKKDNKVESKESKGATLNELVELKNCSSCLFFECRKQ 119

Query: 116 KDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKE 175
           KDLYLWMAK PNGPSVKF+V+AVHTMEELKLTGNHLK SRPLLTFS+NF KD HWKL+KE
Sbjct: 120 KDLYLWMAKCPNGPSVKFMVDAVHTMEELKLTGNHLKGSRPLLTFSTNFDKDPHWKLLKE 179

Query: 176 MIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLV 235
           MI QIFGTPKEHRK+KPYHDHVF FS+ DDHIWFRNYQI+VPHNESDKV RGGLDK+TLV
Sbjct: 180 MITQIFGTPKEHRKAKPYHDHVFAFSLADDHIWFRNYQISVPHNESDKVDRGGLDKITLV 239

Query: 236 EVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKV 273
           EVGPRFCLNPIKIFGGSFGGPTLYENPFY+SPN++R +
Sbjct: 240 EVGPRFCLNPIKIFGGSFGGPTLYENPFYISPNEIRAL 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847680|ref|XP_002891721.1| brix domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297337563|gb|EFH67980.1| brix domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/279 (80%), Positives = 247/279 (88%), Gaps = 6/279 (2%)

Query: 1   MGKKRKH--TEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGV----FRNKEKVL 54
           MGKKRKH  TE   P KK+D    ERPKRTLLGWKDK E +  ++  +    F+NKEKVL
Sbjct: 1   MGKKRKHSETEAPAPVKKNDESAPERPKRTLLGWKDKSEGEAEKSKALSSSGFKNKEKVL 60

Query: 55  VTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRK 114
           VTCSRRI+FRYR LMLN+VSLLPHCKKD+KVEAKSSKGATLNEL+ELK  +SCLFFECRK
Sbjct: 61  VTCSRRISFRYRSLMLNMVSLLPHCKKDSKVEAKSSKGATLNELIELKGSNSCLFFECRK 120

Query: 115 HKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIK 174
           HKDLY+WM KSP+GPSVKFLV AVH MEELKLTGNHLK SRPLLTFSSNF KDAHWKL+K
Sbjct: 121 HKDLYMWMVKSPSGPSVKFLVKAVHAMEELKLTGNHLKGSRPLLTFSSNFDKDAHWKLLK 180

Query: 175 EMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTL 234
           EM+ Q+FG PKEHRKSKPYHDHVFVFSIVD+HIWFRNYQI+VPHNESDK+A+GGLDKMTL
Sbjct: 181 EMLTQVFGIPKEHRKSKPYHDHVFVFSIVDEHIWFRNYQISVPHNESDKIAKGGLDKMTL 240

Query: 235 VEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKV 273
           +EVGPRFCLNPIKIFGGSFGGPTLYENP YVSPNQ+R +
Sbjct: 241 IEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRAL 279

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404250|ref|NP_564618.1| Ribosomal RNA processing Brix domain protein [Arabidopsis thaliana] gi|12324636|gb|AAG52272.1|AC019018_9 unknown protein; 80333-82175 [Arabidopsis thaliana] gi|13878055|gb|AAK44105.1|AF370290_1 unknown protein [Arabidopsis thaliana] gi|17104647|gb|AAL34212.1| unknown protein [Arabidopsis thaliana] gi|332194748|gb|AEE32869.1| Ribosomal RNA processing Brix domain protein [Arabidopsis thaliana]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/279 (79%), Positives = 246/279 (88%), Gaps = 6/279 (2%)

Query: 1   MGKKRKH--TEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGV----FRNKEKVL 54
           MG+KRKH  TE   P KK D    +RPKRTLLGWKDK E +  +A  +    F+NKEKVL
Sbjct: 1   MGRKRKHSETEAPAPVKKSDEPAPDRPKRTLLGWKDKSEGEAEKAKALTSSGFKNKEKVL 60

Query: 55  VTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRK 114
           VTCSRRI+FRYR LMLN+VSLLPHCKKD+KVEAKSSKGATLNEL+ELK+ +SCLFFECRK
Sbjct: 61  VTCSRRISFRYRSLMLNIVSLLPHCKKDSKVEAKSSKGATLNELIELKNSNSCLFFECRK 120

Query: 115 HKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIK 174
           HKDLY+WM KSPNGPSVKFLV AVH MEE+KLTGNHLK SRPLLTFSSNF KDAHWKL+K
Sbjct: 121 HKDLYMWMVKSPNGPSVKFLVKAVHAMEEMKLTGNHLKGSRPLLTFSSNFDKDAHWKLLK 180

Query: 175 EMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTL 234
           EM+ Q+FG PKEHRKSKPYHDHVFVFSIVD+HIWFRNYQI+VPHNESDK+A+GGLDKMTL
Sbjct: 181 EMLTQVFGIPKEHRKSKPYHDHVFVFSIVDEHIWFRNYQISVPHNESDKIAKGGLDKMTL 240

Query: 235 VEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKV 273
           +EVGPRFCLNPIKIF GSFGGPTLYENP YVSPNQ+R +
Sbjct: 241 IEVGPRFCLNPIKIFAGSFGGPTLYENPLYVSPNQIRAL 279

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
TAIR|locus:2090131	315	AT3G15460 "AT3G15460" [Arabido	0.830	0.857	0.824	1.3e-123
TAIR|locus:2011486	320	AT1G52930 [Arabidopsis thalian	0.833	0.846	0.801	9.2e-123
UNIPROTKB|F1SND4	353	BRIX1 "Uncharacterized protein	0.836	0.770	0.467	1.8e-64
UNIPROTKB|Q8TDN6	353	BRIX1 "Ribosome biogenesis pro	0.775	0.713	0.494	3.7e-64
UNIPROTKB|F1NSS7	349	BRIX1 "Uncharacterized protein	0.726	0.676	0.511	4.7e-64
UNIPROTKB|Q3SZZ0	353	BRIX1 "Ribosome biogenesis pro	0.741	0.682	0.503	1.6e-63
MGI|MGI:1915082	353	Brix1 "BRX1, biogenesis of rib	0.769	0.708	0.487	5.4e-63
RGD|1308508	352	Brix1 "BRX1, biogenesis of rib	0.766	0.707	0.487	8.8e-63
UNIPROTKB|E2QZ99	347	BRIX1 "Uncharacterized protein	0.609	0.570	0.446	2e-61
SGD|S000005437	291	BRX1 "Nucleolar protein" [Sacc	0.858	0.958	0.449	1.9e-60

TAIR|locus:2090131 AT3G15460 "AT3G15460" [Arabidopsis thaliana (taxid:3702)]

 Score = 1215 (432.8 bits), Expect = 1.3e-123, P = 1.3e-123
 Identities = 226/274 (82%), Positives = 242/274 (88%)

Query:     1 MGKKRKHTEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPG---VFRNKEKVLVTC 57
             MG+KRKH+E +      DS  E RP+RTLLGWKDK E  E   P    VFRNKEKVLVTC
Sbjct:     1 MGRKRKHSETVTAAPVKDSAPE-RPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVTC 59

Query:    58 SRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKD 117
             SRRINFRYRHLMLN+VSLLPHCKKD+KVEAKSS+GATLNEL+ELK  SSCLFFECRKHKD
Sbjct:    60 SRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHKD 119

Query:   118 LYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMI 177
             LY+WM KSP GPSVKFLVNAVHTMEELKLTGNHLK SRPLLTFSSNF  DAHWKL+KEM+
Sbjct:   120 LYMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEML 179

Query:   178 IQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEV 237
              QIFG P+ HRKSKPYHDHVFVFSIVDDHIWFRNYQI+VPHNESDK+ARG LDKMTL+EV
Sbjct:   180 TQIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIEV 239

Query:   238 GPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVR 271
             GPRFCLNPIKIFGGSFGG TLYENPFYVSPNQ+R
Sbjct:   240 GPRFCLNPIKIFGGSFGGTTLYENPFYVSPNQIR 273

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TAIR|locus:2011486 AT1G52930 [Arabidopsis thaliana (taxid:3702)]

 Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
 Identities = 222/277 (80%), Positives = 245/277 (88%)

Query:     1 MGKKRKH--TEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGV----FRNKEKVL 54
             MG+KRKH  TE   P KK D    +RPKRTLLGWKDK E +  +A  +    F+NKEKVL
Sbjct:     1 MGRKRKHSETEAPAPVKKSDEPAPDRPKRTLLGWKDKSEGEAEKAKALTSSGFKNKEKVL 60

Query:    55 VTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRK 114
             VTCSRRI+FRYR LMLN+VSLLPHCKKD+KVEAKSSKGATLNEL+ELK+ +SCLFFECRK
Sbjct:    61 VTCSRRISFRYRSLMLNIVSLLPHCKKDSKVEAKSSKGATLNELIELKNSNSCLFFECRK 120

Query:   115 HKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIK 174
             HKDLY+WM KSPNGPSVKFLV AVH MEE+KLTGNHLK SRPLLTFSSNF KDAHWKL+K
Sbjct:   121 HKDLYMWMVKSPNGPSVKFLVKAVHAMEEMKLTGNHLKGSRPLLTFSSNFDKDAHWKLLK 180

Query:   175 EMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTL 234
             EM+ Q+FG PKEHRKSKPYHDHVFVFSIVD+HIWFRNYQI+VPHNESDK+A+GGLDKMTL
Sbjct:   181 EMLTQVFGIPKEHRKSKPYHDHVFVFSIVDEHIWFRNYQISVPHNESDKIAKGGLDKMTL 240

Query:   235 VEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVR 271
             +EVGPRFCLNPIKIF GSFGGPTLYENP YVSPNQ+R
Sbjct:   241 IEVGPRFCLNPIKIFAGSFGGPTLYENPLYVSPNQIR 277

GO:0005634 "nucleus" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0000741 "karyogamy" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

UNIPROTKB|F1SND4 BRIX1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 137/293 (46%), Positives = 188/293 (64%)

Query:     3 KKRKHTEI-IEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRI 61
             KK K +E   +P  K   V EE  +      +D+  I      G ++NKE++L+  SR I
Sbjct:    17 KKLKRSEKDAKPPAKSSEVAEEAEE------EDRNRIPGPVCKGKWKNKERILIFSSRGI 70

Query:    62 NFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLW 121
             NFR RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W
Sbjct:    71 NFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMW 129

Query:   122 MAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIF 181
             ++ SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F +  H+ L+KE++IQIF
Sbjct:   130 LSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIF 189

Query:   182 GTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRF 241
              TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF
Sbjct:   190 STPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EEDAA---------LVEIGPRF 236

Query:   242 CLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVLSFLLHFERKSLCSICIVDKI 294
              LN IKIF GSFGGPTLYENP Y SPN  R+V+  +   + K    +  V K+
Sbjct:   237 VLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYKEKQQVKDVQKL 289

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q8TDN6 BRIX1 "Ribosome biogenesis protein BRX1 homolog" [Homo sapiens (taxid:9606)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 135/273 (49%), Positives = 181/273 (66%)

Query:     3 KKRKHTEI-IEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRI 61
             KK K  EI  EP  K  +  EE  +      +D+I        G ++NKE++L+  SR I
Sbjct:    17 KKPKRNEIDAEPPAKRHATAEEVEEEE----RDRIP--GPVCKGKWKNKERILIFSSRGI 70

Query:    62 NFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLW 121
             NFR RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W
Sbjct:    71 NFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMW 129

Query:   122 MAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIF 181
             ++ SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F +  H+ L+KE++IQIF
Sbjct:   130 LSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIF 189

Query:   182 GTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRF 241
              TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF
Sbjct:   190 STPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EEDAA---------LVEIGPRF 236

Query:   242 CLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVL 274
              LN IKIF GSFGGPTLYENP Y SPN  R+V+
Sbjct:   237 VLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVI 269

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1NSS7 BRIX1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 129/252 (51%), Positives = 171/252 (67%)

Query:    34 DKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGA 93
             ++  I    + G ++NKE+VL+  SR INFR RHLM ++ +L+PH K D K++ K  K  
Sbjct:    41 EEYSIPAPVSQGKWKNKERVLIFSSRGINFRTRHLMQDLRTLMPHSKADTKMDRKD-KLF 99

Query:    94 TLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKA 153
              +NE+ E+K+C+ C+FFE +K +DLY+W++ +P GPS KFLV  +HT+ ELK+TGN L+ 
Sbjct:   100 VINEVCEMKNCNKCIFFEAKKKQDLYMWLSNTPQGPSAKFLVQNIHTLAELKMTGNCLRG 159

Query:   154 SRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQ 213
             SRPLL+F   F K+ H+ L+KE+ IQIF TP+ H KS+P+ DHVF F+I D  IWFRNYQ
Sbjct:   160 SRPLLSFDPTFDKEPHYALLKELFIQIFSTPQYHPKSQPFVDHVFTFTITDKRIWFRNYQ 219

Query:   214 ITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKV 273
             I     E D          +LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN  R++
Sbjct:   220 II----EEDA---------SLVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRL 266

Query:   274 --LSFLLHFERK 283
               LS    F  K
Sbjct:   267 IRLSMAAKFREK 278

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q3SZZ0 BRIX1 "Ribosome biogenesis protein BRX1 homolog" [Bos taurus (taxid:9913)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 132/262 (50%), Positives = 178/262 (67%)

Query:    13 PTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNV 72
             P K +D V+EE  +      KD+I        G ++NKE++L+  SR INFR RHLM ++
Sbjct:    29 PAKAND-VSEEAAEEE----KDRIP--GPVCKGKWKNKERILIFSSRGINFRTRHLMQDL 81

Query:    73 VSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVK 132
               L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++ SP+GPS K
Sbjct:    82 RMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHGPSAK 140

Query:   133 FLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKP 192
             FLV  +HT+ ELK+TGN LK SRPLL+F   F +  H+ L+KE++IQIF TP+ H KS+P
Sbjct:   141 FLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHPKSQP 200

Query:   193 YHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGS 252
             + DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF LN IKIF GS
Sbjct:   201 FVDHVFTFTILDNRIWFRNFQII----EEDAA---------LVEIGPRFVLNLIKIFQGS 247

Query:   253 FGGPTLYENPFYVSPNQVRKVL 274
             FGGPTLYENP Y SPN  R+V+
Sbjct:   248 FGGPTLYENPHYQSPNMHRRVI 269

GO:0005730 "nucleolus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

MGI|MGI:1915082 Brix1 "BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 132/271 (48%), Positives = 179/271 (66%)

Query:     4 KRKHTEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINF 63
             KR   +  +P K+ D V +E  +      +D+I        G ++NKE++L+  SR INF
Sbjct:    20 KRSSKDAGQPAKQAD-VAKEAEEEN----RDRIP--GPVCKGKWKNKERILIFSSRGINF 72

Query:    64 RYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMA 123
             R RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++
Sbjct:    73 RTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLS 131

Query:   124 KSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGT 183
              SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F    H+ L+KE +IQIF T
Sbjct:   132 NSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDDLPHYALLKEFLIQIFST 191

Query:   184 PKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCL 243
             P+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF L
Sbjct:   192 PRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EEDAA---------LVEIGPRFVL 238

Query:   244 NPIKIFGGSFGGPTLYENPFYVSPNQVRKVL 274
             N IKIF GSFGGPTLYENP Y SPN  R+V+
Sbjct:   239 NLIKIFQGSFGGPTLYENPHYQSPNMHRRVI 269

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0042254 "ribosome biogenesis" evidence=IEA

RGD|1308508 Brix1 "BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 132/271 (48%), Positives = 179/271 (66%)

Query:     4 KRKHTEIIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINF 63
             K+   +  +P K+ D V +E  +      KD+I        G ++NKE++L+  SR INF
Sbjct:    20 KKNRKDAGQPAKQAD-VAKEAEEE-----KDRIP--GPVCKGKWKNKERILIFSSRGINF 71

Query:    64 RYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMA 123
             R RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W++
Sbjct:    72 RTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLS 130

Query:   124 KSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGT 183
              SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F    H+ L+KE +IQIF T
Sbjct:   131 NSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDDLPHYALLKEFLIQIFST 190

Query:   184 PKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCL 243
             P+ H KS+P+ DHVF F+I+D+ IWFRN+QI     E D           LVE+GPRF L
Sbjct:   191 PRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EEDAA---------LVEIGPRFVL 237

Query:   244 NPIKIFGGSFGGPTLYENPFYVSPNQVRKVL 274
             N IKIF GSFGGPTLYENP Y SPN  R+V+
Sbjct:   238 NLIKIFQGSFGGPTLYENPHYQSPNMHRRVV 268

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|E2QZ99 BRIX1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 465 (168.7 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
 Identities = 95/213 (44%), Positives = 139/213 (65%)

Query:     3 KKRKHTEII-EPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRI 61
             + RK+ E   +P K  D V EE  +      +++  I      G ++NKE++L+  SR I
Sbjct:    18 RPRKNQEDSKQPAKLGD-VAEEAEE------EERGRIPGPVCKGKWKNKERILIFSSRGI 70

Query:    62 NFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLW 121
             NFR RHLM ++  L+PH K D K++ K  K   +NE+ E+K+C+ C++FE +K +DLY+W
Sbjct:    71 NFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDLYMW 129

Query:   122 MAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIF 181
             ++ SP+GPS KFLV  +HT+ ELK+TGN LK SRPLL+F   F +  H+ L+KE++IQIF
Sbjct:   130 LSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIF 189

Query:   182 GTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQI 214
              TP+ H KS+P+  H       D+ IWFRN+QI
Sbjct:   190 STPRYHPKSQPFFHHF------DNRIWFRNFQI 216

GO:0005730 "nucleolus" evidence=IEA

SGD|S000005437 BRX1 "Nucleolar protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 129/287 (44%), Positives = 177/287 (61%)

Query:    30 LGWKDKIEIKETEAPGV--FRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEA 87
             L  K K    E +   V  F NK++ L+  SR +N+R+RHL+ ++  LLPH +K+ K++ 
Sbjct:     8 LAGKSKDNKSEKKQGNVKQFMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDT 67

Query:    88 KSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLT 147
             K      LNE+ EL +C++ LFFE RKH+DLYLW++K PNGP++KF +  +HTM+EL  T
Sbjct:    68 KKDL-QQLNEIAELYNCNNVLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFT 126

Query:   148 GNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHI 207
             GN LK SRP+L+F   F    H++LIKE+++  FG P   RKSKP+ DHV  FSIVDD I
Sbjct:   127 GNCLKGSRPVLSFDQRFESSPHYQLIKELLVHNFGVPPNARKSKPFIDHVMSFSIVDDKI 186

Query:   208 WFRNYQITVPHNESDKVA-RGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVS 266
             W R Y+I+  H+  +K     G + ++LVE+GPRF +  I I  GSFGGP +YEN  YVS
Sbjct:   187 WVRTYEIS--HSTKNKEEYEDGEEDISLVEIGPRFVMTVILILEGSFGGPKIYENKQYVS 244

Query:   267 PNQVRKVLSFLLHFERKSLCSICIVDKIVLKTLMDSLGTSRMSLDML 313
             PN VR  +      E KS     +  KI  K   + L    +S D L
Sbjct:   245 PNVVRAQIKQQAAEEAKSRAEAAVERKI--KRRENVLAADPLSNDAL 289

GO:0008097 "5S rRNA binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IEA;IPI

GO:0000027 "ribosomal large subunit assembly" evidence=IPI

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0030687 "preribosome, large subunit precursor" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0042134 "rRNA primary transcript binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q08235	BRX1_YEAST	No assigned EC number	0.4626	0.8061	0.9003	yes	no
Q8TDN6	BRX1_HUMAN	No assigned EC number	0.5347	0.6646	0.6118	yes	no
Q3SZZ0	BRX1_BOVIN	No assigned EC number	0.5347	0.6646	0.6118	yes	no
Q4QQT6	BRX1_RAT	No assigned EC number	0.5347	0.6646	0.6136	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00110946	hypothetical protein (317 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_XV0629	hypothetical protein (314 aa)				•	•		•		0.761
	gw1.I.4832.1	hypothetical protein (422 aa)				•	•				0.744
	gw1.86.17.1	hypothetical protein (573 aa)				•	•		•		0.709
	estExt_Genewise1_v1.C_LG_IV0024	SubName- Full=Putative uncharacterized protein; (604 aa)				•	•		•		0.699
	estExt_Genewise1_v1.C_LG_VII2715	hypothetical protein (380 aa)				•					0.640
	fgenesh4_pg.C_LG_XVII000484	hypothetical protein (433 aa)				•	•		•		0.626
	estExt_fgenesh4_pm.C_1070023	hypothetical protein (554 aa)				•					0.616
	grail3.0106016302	hypothetical protein (217 aa)				•	•		•		0.614
	fgenesh4_pg.C_LG_X000306	hypothetical protein (187 aa)				•	•				0.606
	eugene3.00090493	hypothetical protein (840 aa)				•	•				0.606

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	325
COG5154	283	COG5154, BRX1, RNA-binding protein required for 60	2e-76
pfam04427	176	pfam04427, Brix, Brix domain	2e-46
smart00879	180	smart00879, Brix, The Brix domain is found in a nu	4e-40

>gnl|CDD|227483 COG5154, BRX1, RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

 Score =  235 bits (600), Expect = 2e-76
 Identities = 104/225 (46%), Positives = 141/225 (62%), Gaps = 8/225 (3%)

Query: 47  FRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSS 106
           F  K+  L+  SR +++R RHLM ++  L+PH KK+ K++ K + G  LNEL EL +C++
Sbjct: 27  FVPKQTSLILSSRGVSYRIRHLMKDLSRLVPHSKKEQKLDMKKNLG-QLNELAELYNCNN 85

Query: 107 CLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGK 166
            LFFE RK  DLYL  A+ PNGP+VKF ++ +HTM+EL  TGN LK SRP+L+F   F  
Sbjct: 86  MLFFESRKRSDLYLMGARIPNGPTVKFRMHNLHTMDELNFTGNSLKGSRPVLSFDKEFED 145

Query: 167 DAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVAR 226
             H K  KE++  IFG PK  R+SKP+ D V  F I+D  IW R Y+I   + +  K   
Sbjct: 146 IPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCFFILDGKIWVRCYEIGRENEDKSK--- 202

Query: 227 GGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVR 271
                + L E+GPRF +  IKI  GSFGGP +Y+N  +VS   VR
Sbjct: 203 ----DVKLEEIGPRFVMTVIKILEGSFGGPAIYKNETFVSSTMVR 243

Length = 283

>gnl|CDD|218084 pfam04427, Brix, Brix domain

 Score =  155 bits (393), Expect = 2e-46
 Identities = 64/194 (32%), Positives = 95/194 (48%), Gaps = 18/194 (9%)

Query: 55  VTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRK 114
           +T SR+ + R R L  ++  L P+ KK N+ + K      L E    K  +S L F   K
Sbjct: 1   ITTSRKPSKRLRQLAKDLRLLFPNAKKLNRGKKKLKD---LLEFAGEKGDTSLLVFGEHK 57

Query: 115 HKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIK 174
            K L L + + PNGP+++F ++ V  ++++K  G   K SRPLL F+  F      KLIK
Sbjct: 58  -KPLNLTIGRLPNGPTLEFRISNVKLLKDIKGKGKGNKGSRPLLVFNGFFFTRLGLKLIK 116

Query: 175 EMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTL 234
           E++  +F  P  H+      D V  FS   D I+FR+Y+                 K+ L
Sbjct: 117 ELLQDLFPGPNVHKIPLKGGDRVITFSNQRDTIFFRHYRYK--------------KKVEL 162

Query: 235 VEVGPRFCLNPIKI 248
            E+GPRF L   +I
Sbjct: 163 QEIGPRFTLKLRRI 176

Length = 176

>gnl|CDD|214879 smart00879, Brix, The Brix domain is found in a number of eukaryotic proteins

 Score =  138 bits (350), Expect = 4e-40
 Identities = 66/193 (34%), Positives = 95/193 (49%), Gaps = 16/193 (8%)

Query: 54  LVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECR 113
           L+T SR+ + R R L  ++  L P   K N+   K+     L    E  +    + FE  
Sbjct: 1   LITTSRKPSKRTRQLAKDLRRLFPPSTKINR--GKNKLNELLEFASEKGNTDLLVVFESS 58

Query: 114 KHK-DLYLWMAKSPNGPSVKFLVNAVHTMEELK--LTGNHLKASRPLLTFSSNFGKDAHW 170
                L L + + PNGP++ F +  V   +ELK   TGN L  SRPLL F++ F +    
Sbjct: 59  SKGRPLNLTIYRLPNGPTLDFKILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGK- 117

Query: 171 KLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLD 230
            LIKE+   +F  P EH+KS P    V  FS  DD+I+FR+Y+I     +          
Sbjct: 118 -LIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFFRHYRIKFGKKKP--------- 167

Query: 231 KMTLVEVGPRFCL 243
           ++ L E+GPRF L
Sbjct: 168 RVELQEIGPRFTL 180

Members include SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
KOG2971	299	consensus RNA-binding protein required for biogene	100.0
COG5154	283	BRX1 RNA-binding protein required for 60S ribosoma	100.0
KOG2963	405	consensus RNA-binding protein required for 60S rib	100.0
PF04427	191	Brix: Brix domain; InterPro: IPR007109 The Brix do	100.0
KOG3031	307	consensus Protein required for biogenesis of the r	100.0
smart00879	180	Brix Brix domain. The Brix domain is found in a nu	100.0
KOG2781	290	consensus U3 small nucleolar ribonucleoprotein (sn	100.0
KOG2780	302	consensus Ribosome biogenesis protein RPF1, contai	100.0
COG5106	316	RPF2 Uncharacterized conserved protein [Function u	99.95
COG2136	191	IMP4 Predicted exosome subunit/U3 small nucleolar	99.82
PRK03972	208	ribosomal biogenesis protein; Validated	99.75
PRK00933	165	ribosomal biogenesis protein; Validated	97.6

>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.5e-73  Score=520.85  Aligned_cols=262  Identities=60%  Similarity=0.970  Sum_probs=235.0

Q ss_pred             CCcc--ccccccCC--CCCCCCCCccCCccccccCcCCcccccccCCCCccccCCeEEEEecCCCCHHHHHHHHHHHhcC
Q 020495            1 MGKK--RKHTEIIE--PTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLL   76 (325)
Q Consensus         1 ~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~kvLI~~sr~~s~~~r~LmkDLr~L~   76 (325)
                      ||++  +|+++.++  +.++.+..+|++|.|+. ...++..    +..+.|.|+++|||++|||++.++||||+||..||
T Consensus         1 Mg~~~k~k~~~~~~~~~~~~~~e~~~~~pqr~~-~~~~~~~----pk~~~w~NK~rvlv~ssRgis~R~RhLm~di~~Ll   75 (299)
T KOG2971|consen    1 MGRKYKRKKSETAPKAEDKKSEENAPEPPQRNL-EESDDFV----PKKEKWKNKERVLVLSSRGISFRTRHLMKDISSLL   75 (299)
T ss_pred             CcchhhhhhccccCcccccchhccCCCCCcccc-ccccccc----ccccccccceeEEEEecCCchHHHHHHHHHHHHhc
Confidence            6766  66676333  33344455788887771 1122222    23677999999999999999999999999999999


Q ss_pred             CCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeCCCCCeEEEEecceeehhhhhccCCCCCCCCC
Q 020495           77 PHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRP  156 (325)
Q Consensus        77 P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rlP~GPTi~F~I~n~~~~~elk~~gn~~kgsrP  156 (325)
                      ||+++++|++++. ++..|+++|++++|+.++||+++|+++.||||++.|+|||++|.|+|+|||+|++++|||++||+|
T Consensus        76 ph~k~dsk~d~~k-~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~GpSvkFlv~n~hTM~ElkmtgN~lkgsrp  154 (299)
T KOG2971|consen   76 PHSKKDSKLDRKK-KLGVLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGPSVKFLVHNVHTMAELKMTGNCLKGSRP  154 (299)
T ss_pred             ccccccchhhhcc-hHHHHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCCceEEehhhhhhHHHhCCccccccCCcc
Confidence            9999999999777 899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCEEEEEEEEEeccCCCccccccCCcCceEEEE
Q 020495          157 LLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVE  236 (325)
Q Consensus       157 lLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVisF~~~dd~I~fRhY~I~~k~ses~~~~~~~~~~v~L~E  236 (325)
                      +|+|+++|++.|||+++|+||++.|++|..|++|+||+|||++|++.||+||||+|+|...            ..+.|+|
T Consensus       155 lLsFd~~Fd~~pHlkl~Kell~q~fgiP~~hrkSkpf~Dhvf~Fsi~D~~IWfRnyqI~~~------------ed~~L~E  222 (299)
T KOG2971|consen  155 LLSFDKAFDELPHLKLLKELLEQIFGIPKHHRKSKPFVDHVFTFSILDGKIWFRNYQISEE------------EDKTLIE  222 (299)
T ss_pred             eeecccccccchHHHHHHHHHHHHcCCCCCCcccCCccceEEEEEEecCeEEEEEeEeccc------------cCcceee
Confidence            9999999999999999999999999999999999999999999999999999999999733            2478999


Q ss_pred             ecceeeEEEEEEecCCCCCCeeeeCCCcCCHHHHHHHhhhhccc
Q 020495          237 VGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVLSFLLHF  280 (325)
Q Consensus       237 IGPRf~LkL~KI~~G~f~G~vLy~n~~~~Sp~~~r~~~k~~~~l  280 (325)
                      |||||+|++++|++|+|+|.+||+|+.|+||+++|+..|+.++-
T Consensus       223 iGPRfvl~~ikif~gsFgG~~lYenp~yvspn~~r~~~k~~~a~  266 (299)
T KOG2971|consen  223 IGPRFVLNVIKIFEGSFGGPTLYENPKYVSPNMIRAVIKKQAAG  266 (299)
T ss_pred             eccHHHHhHHHHHhccCCCceeecCccccCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999876553

>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4e-61  Score=432.81  Aligned_cols=235  Identities=44%  Similarity=0.750  Sum_probs=219.6

Q ss_pred             CCCccccCCeEEEEecCCCCHHHHHHHHHHHhcCCCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEE
Q 020495           43 APGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWM  122 (325)
Q Consensus        43 ~~~~~~n~~kvLI~~sr~~s~~~r~LmkDLr~L~P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i  122 (325)
                      ....|.|++++||++|||++.+.||||+||..|+||+++++|++.+. ++.+|+++|+.++|++++||+++|+.+.|||+
T Consensus        23 n~~~f~~kq~~lilSsRGvsyr~RHL~~Dls~l~phskke~KlD~kk-~l~qLnelaelynCnn~lFFesrkr~Dlyl~~  101 (283)
T COG5154          23 NSAGFVPKQTSLILSSRGVSYRIRHLMKDLSRLVPHSKKEQKLDMKK-NLGQLNELAELYNCNNMLFFESRKRSDLYLMG  101 (283)
T ss_pred             chhcccccceEEEEecCCchHHHHHHHHHHHHhCcccccccccchhh-hHHHHHHHHHHhcCCceEEEeecccccceeee
Confidence            36678999999999999999999999999999999999999999998 89999999999999999999999999999999


Q ss_pred             EeCCCCCeEEEEecceeehhhhhccCCCCCCCCCeEEEcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEE
Q 020495          123 AKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSI  202 (325)
Q Consensus       123 ~rlP~GPTi~F~I~n~~~~~elk~~gn~~kgsrPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVisF~~  202 (325)
                      +|.|+|||++|+++|.|||+|+.++|||++||+|.|+|++.|++.|||+++|+++++.|+.|++.+.|+||+|||++|++
T Consensus       102 ar~pnGptvkF~~~NlhTMdelNftgN~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ip~~arrSkpfiD~v~~f~i  181 (283)
T COG5154         102 ARIPNGPTVKFRMHNLHTMDELNFTGNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCFFI  181 (283)
T ss_pred             ccCCCCCeEEEEEeccchHhhcCCccccccCCcceEeeccccccchHHHHHHHHHHHhccCCCcccccccchhheEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCEEEEEEEEEeccCCCccccccCCcCceEEEEecceeeEEEEEEecCCCCCCeeeeCCCcCCHHHHHHHhhhhccccc
Q 020495          203 VDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVLSFLLHFER  282 (325)
Q Consensus       203 ~dd~I~fRhY~I~~k~ses~~~~~~~~~~v~L~EIGPRf~LkL~KI~~G~f~G~vLy~n~~~~Sp~~~r~~~k~~~~l~~  282 (325)
                      .||+||+|.|.|.-. .|      .+...|+|+||||||+|.+++|.+|+|+|.+||.|.+|+||+++|++.+.+++-+.
T Consensus       182 ~DgkIWvR~YeI~re-~e------d~~~dv~L~EIGPRfVmtvi~iLEgsFgGp~iYkn~~~vs~~~vra~ir~qaae~~  254 (283)
T COG5154         182 LDGKIWVRCYEIGRE-NE------DKSKDVKLEEIGPRFVMTVIKILEGSFGGPAIYKNETFVSSTMVRAAIRNQAAENL  254 (283)
T ss_pred             ecCeEEEEEEeeccc-cc------cccccceeeeeccHHHHHHHHHHHhccCCceeeecccccchHHHHHHHHHHHHHHH
Confidence            999999999999632 21      12346999999999999999999999999999999999999999999986555444


Q ss_pred             ccc
Q 020495          283 KSL  285 (325)
Q Consensus       283 k~~  285 (325)
                      +..
T Consensus       255 ~~R  257 (283)
T COG5154         255 FAR  257 (283)
T ss_pred             Hhh
Confidence            433

>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-45  Score=352.36  Aligned_cols=244  Identities=20%  Similarity=0.285  Sum_probs=207.6

Q ss_pred             cCCeEEEEecCCCCHHHHHHHHHHHhcC-CCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeCCC
Q 020495           49 NKEKVLVTCSRRINFRYRHLMLNVVSLL-PHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPN  127 (325)
Q Consensus        49 n~~kvLI~~sr~~s~~~r~LmkDLr~L~-P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rlP~  127 (325)
                      ..+.+++..++-++..+++|..|||++| ||++..+|..++| +++|++.+|...|+||+++++.+.. ..+|.|+|+|.
T Consensus        24 ~~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N-~iKDfv~~~gplGVTH~l~lskt~~-nlslki~R~Pq  101 (405)
T KOG2963|consen   24 KSPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRN-KLKDFVVMSGPLGVTHLLMLSKTET-NLSLKIARTPQ  101 (405)
T ss_pred             cCceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhh-hhhhHHhhcccccceEEEEEecccC-ceeEEEEecCC
Confidence            3567777777778899999999999999 9999999866666 9999999999999999999998875 78999999999


Q ss_pred             CCeEEEEecceeehhhhhccC------CCCCCCCCeEEEcCCCCCh--hhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEE
Q 020495          128 GPSVKFLVNAVHTMEELKLTG------NHLKASRPLLTFSSNFGKD--AHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFV  199 (325)
Q Consensus       128 GPTi~F~I~n~~~~~elk~~g------n~~kgsrPlLvF~~~F~~~--~hlklik~lf~~~F~~p~~~~~s~~~~drVis  199 (325)
                      |||++|+|..|++.+|+....      |..--++|+||+| +|++.  +|++|+..|||||||+++++.+++..++||++
T Consensus       102 GPTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmN-gFg~~~~~HlkL~~t~FQNmFPsInv~tvnlntikRcll  180 (405)
T KOG2963|consen  102 GPTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLN-GFGTSGRKHLKLMTTMFQNMFPSINVATVNLNTIKRCLL  180 (405)
T ss_pred             CCceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEc-cCCCCcchhHHHHHHHHHHcCCCcCcceeeccceeEEEE
Confidence            999999999999999996421      2233489999997 99986  89999999999999999999999999999999


Q ss_pred             EEEe--CCEEEEEEEEEeccCC----------------------------------------Cccc--------------
Q 020495          200 FSIV--DDHIWFRNYQITVPHN----------------------------------------ESDK--------------  223 (325)
Q Consensus       200 F~~~--dd~I~fRhY~I~~k~s----------------------------------------es~~--------------  223 (325)
                      ++|.  ++.|.||||.|.+...                                        |||.              
T Consensus       181 inyn~dt~eIdmRHysI~vvpVGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~~g~~~seSE~e~d~~~~i~~~~~~  260 (405)
T KOG2963|consen  181 INYNRDTGEIDMRHYSIRVVPVGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLKGGLYASESEIEDDATVRIVDNQDV  260 (405)
T ss_pred             EecCCCCCeeeeeeeEEEEEecccchHHHHHHhhhcccCCCCCchhhhhHHHHhcCCcccccccccccccceEEeccccc
Confidence            9994  4689999999986541                                        1110              


Q ss_pred             ---cc--------c---CCcCceEEEEecceeeEEEEEEecCCCCCCeeeeCCCcCCHHHHHHHhhh-hccccccccccc
Q 020495          224 ---VA--------R---GGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKVLSF-LLHFERKSLCSI  288 (325)
Q Consensus       224 ---~~--------~---~~~~~v~L~EIGPRf~LkL~KI~~G~f~G~vLy~n~~~~Sp~~~r~~~k~-~~~l~~k~~~~~  288 (325)
                         +.        +   .++..|+|+|||||+||+|+||++|.++|+||||.+..+|++|+.++.+. +|....|+++++
T Consensus       261 ~~eveL~q~~~s~g~~~~qksaikL~EIGPRlTlqLvKIeEGi~~GkVlyH~hv~Kt~eEi~~l~~~~ekk~~lKeqRkk  340 (405)
T KOG2963|consen  261 KEEVELPQPKASRGNQPPQKSAIKLTEIGPRLTLQLVKIEEGICEGKVLYHEHVQKTEEEIKALRKRHEKKRRLKEQRKK  340 (405)
T ss_pred             hhhhhccccccccCCCcccccceeeEeecccceEEEEEeeccccccceEEeehhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence               00        1   23678999999999999999999999999999999999999999999873 555667777777


Q ss_pred             cchhHHH
Q 020495          289 CIVDKIV  295 (325)
Q Consensus       289 ~~~~~~~  295 (325)
                      .|-..+.
T Consensus       341 eQ~env~  347 (405)
T KOG2963|consen  341 EQEENVA  347 (405)
T ss_pred             HHHHHHH
Confidence            6655443

>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins

Probab=100.00  E-value=5.9e-42  Score=305.22  Aligned_cols=186  Identities=36%  Similarity=0.586  Sum_probs=78.0

Q ss_pred             EEecCCCCHHHHHHHHHHHhcC-CCCcccchhhccCC-ChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeCCCCCeEE
Q 020495           55 VTCSRRINFRYRHLMLNVVSLL-PHCKKDNKVEAKSS-KGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVK  132 (325)
Q Consensus        55 I~~sr~~s~~~r~LmkDLr~L~-P~skk~~K~~~kn~-~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rlP~GPTi~  132 (325)
                      |++|+++|+++++|++||+.++ ||+.+   +.+++. .++++.++|..++|++++++++++++|++|||+|+|+|||++
T Consensus         1 i~ts~~~s~~~~~l~~DL~~l~~p~s~~---~~r~~~~~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~   77 (191)
T PF04427_consen    1 ITTSRKPSKRLRQLMKDLRSLFPPNSKK---LNRKKKNSLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLE   77 (191)
T ss_dssp             -EESSS--HHHHHHHHHHHTTS-TTEEE------TT---HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHcCCCeEE---EeCCCCCchHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEE
Confidence            6899999999999999999999 88876   444443 789999999999999999999998889999999999999999


Q ss_pred             EEecceeehhhhhccCCCCCCCCCeEEEcCCCC--ChhhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCE-EEE
Q 020495          133 FLVNAVHTMEELKLTGNHLKASRPLLTFSSNFG--KDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDH-IWF  209 (325)
Q Consensus       133 F~I~n~~~~~elk~~gn~~kgsrPlLvF~~~F~--~~~hlklik~lf~~~F~~p~~~~~s~~~~drVisF~~~dd~-I~f  209 (325)
                      |+|.+|++++|++.......+++|+|+|+ +|.  .+++++++++||++||+++..+.+.++++||||+|++++|. |||
T Consensus        78 f~I~~~~~~~~~~~~~~~~~~~~P~lif~-g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~~~d~~I~f  156 (191)
T PF04427_consen   78 FSIENYKLMKDIKSSSKRPKGSRPLLIFN-GFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSNQRDFVIFF  156 (191)
T ss_dssp             EEEEEEE-HHHHT-------S---EEEEE---------------------------------------------------
T ss_pred             EEEEeEEEhhHhcccccCCCCCCeEEEEE-eccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999986655455889999998 443  35899999999999999999999999999999999999888 999


Q ss_pred             EEEEEeccCCCccccccCCcCceEEEEecceeeEEEEEE
Q 020495          210 RNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI  248 (325)
Q Consensus       210 RhY~I~~k~ses~~~~~~~~~~v~L~EIGPRf~LkL~KI  248 (325)
                      ||| |..+.++.   .+...+.|+|+||||||+|+|+||
T Consensus       157 R~Y-i~~~~~~~---~~~~~~~v~L~EiGPr~~l~l~kI  191 (191)
T PF04427_consen  157 RHY-IFKSGSKN---PKKLLPRVELVEIGPRFTLKLRKI  191 (191)
T ss_dssp             ---------------------------------------
T ss_pred             ccc-cccccccc---ccccccccccccccccccccccCC
Confidence            999 72221110   001125699999999999999987

There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.

>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3e-38  Score=294.41  Aligned_cols=218  Identities=17%  Similarity=0.282  Sum_probs=202.1

Q ss_pred             CccccCCeEEEEecCCCCHHHHHHHHHHHhcC-CCCcccchhhccC-----CChhhHHHHhhhCCCCeEEEEEeecCCCC
Q 020495           45 GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLL-PHCKKDNKVEAKS-----SKGATLNELVELKSCSSCLFFECRKHKDL  118 (325)
Q Consensus        45 ~~~~n~~kvLI~~sr~~s~~~r~LmkDLr~L~-P~skk~~K~~~kn-----~~lk~l~~~a~~~~~s~~i~f~~~KK~~~  118 (325)
                      .-.+|....|++.+..++..+.++|.||..+. |.+..   ++++|     ++...+++++++++|+.+++.+++||+|+
T Consensus        22 klve~~k~alf~~g~~~~~tl~~vm~dl~alKKp~~i~---~~rkN~i~pFEd~ssleffseK~D~slfv~gs~sKKrp~   98 (307)
T KOG3031|consen   22 KLVENHKDALFLPGMKTNKTLLDVMKDLYALKKPLEIR---YNRKNNIHPFEDPSSLEFFSEKNDCSLFVLGSHSKKRPN   98 (307)
T ss_pred             hhchhhhhhhccCchhhchHHHHHHHHHHHhccCceee---eccCCCcccCCCCchHHHHhhhhhhhhhhhccccccCCC
Confidence            44778889999999999999999999999998 98775   66776     56679999999999999999999999999


Q ss_pred             eEEEEeCCCC---CeEEEEecceeehhhhhccCCCCCCCCCeEEEc-CCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCC
Q 020495          119 YLWMAKSPNG---PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFS-SNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYH  194 (325)
Q Consensus       119 ~L~i~rlP~G---PTi~F~I~n~~~~~elk~~gn~~kgsrPlLvF~-~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~  194 (325)
                      +|++||++++   +|++|+|+||.+..||+..+ +..|++|+|+|+ ..|++++.+++++++|.|+|+++.++.+.+.++
T Consensus        99 nLv~gR~fd~~vlDMiElgI~~ykslsdF~~~k-~~~gtKP~l~f~G~~f~~~~~~krlknL~vDfFrge~vd~v~l~Gl  177 (307)
T KOG3031|consen   99 NLVIGRTFDYEVLDMIELGIENYKSLSDFKAAK-ITEGTKPMLIFQGAVFDQHPEYKRLKNLFVDFFRGEKVDKVRLAGL  177 (307)
T ss_pred             ceEEEEecCchhhHHHHHhhhhhhhhhhhhccC-CCCCCCceEEEecchhccChHHHHHHHHHHHHHcCCcccceeeccc
Confidence            9999999999   99999999999999999864 778999999999 999999999999999999999999999999999


Q ss_pred             CEEEEEEEeCC-EEEEEEEEEeccCCCccccccCCcCceEEEEecceeeEEEEEEecCCCCCCeeeeCCCcCCHHHHHHH
Q 020495          195 DHVFVFSIVDD-HIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQVRKV  273 (325)
Q Consensus       195 drVisF~~~dd-~I~fRhY~I~~k~ses~~~~~~~~~~v~L~EIGPRf~LkL~KI~~G~f~G~vLy~n~~~~Sp~~~r~~  273 (325)
                      +||++|++.++ .|+||||.+..+++      ++..|+|+|+||||+++|+++++              ...|++.++++
T Consensus       178 ~~v~vfta~~~~~v~~r~Y~lklkKs------~~~~PRiELeE~GPsldf~irR~--------------~~asddL~k~A  237 (307)
T KOG3031|consen  178 EYVIVFTATEETNVLFRVYRLKLKKS------GTRTPRIELEEMGPSLDFEIRRT--------------KLASDDLYKEA  237 (307)
T ss_pred             cEEEEEEeecCceeeeeeeeeeeeec------cCCCCceehhhcCCceeEEEEec--------------cCCCHHHHHHH
Confidence            99999999876 59999999999987      67789999999999999999999              88999999999


Q ss_pred             hhhhccccccccc
Q 020495          274 LSFLLHFERKSLC  286 (325)
Q Consensus       274 ~k~~~~l~~k~~~  286 (325)
                      +++|+||+.|.+|
T Consensus       238 ~k~PK~l~~K~kK  250 (307)
T KOG3031|consen  238 LKKPKQLEKKKKK  250 (307)
T ss_pred             hcCchhccccccc
Confidence            9999998766554

>smart00879 Brix Brix domain

Probab=100.00  E-value=1.7e-36  Score=266.15  Aligned_cols=176  Identities=39%  Similarity=0.568  Sum_probs=152.9

Q ss_pred             EEEecCCCCHHHHHHHHHHHhcCCCCcccchhhccCCChhhHHHHhhhC-CCCeEEEEEee-cCCCCeEEEEeCCCCCeE
Q 020495           54 LVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELK-SCSSCLFFECR-KHKDLYLWMAKSPNGPSV  131 (325)
Q Consensus        54 LI~~sr~~s~~~r~LmkDLr~L~P~skk~~K~~~kn~~lk~l~~~a~~~-~~s~~i~f~~~-KK~~~~L~i~rlP~GPTi  131 (325)
                      ||++||++|.++++|++||+.++|++..   ..++++++.++.++|... +|+++++++.+ +++|++||++|+|+|||+
T Consensus         1 lit~sr~~s~~~r~~~~dL~~~~~~~~~---~~r~~~~~~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l   77 (180)
T smart00879        1 LITTSRKPSKRTRQLAKDLRRLFPPSTK---INRGKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTL   77 (180)
T ss_pred             CEEcCCCCCHHHHHHHHHHHHHCCCcEe---ecccCccHHHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcE
Confidence            6899999999999999999999987665   334444667788887777 88888888876 677999999999999999


Q ss_pred             EEEecceeehhhhhc--cCCCCCCCCCeEEEcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCEEEE
Q 020495          132 KFLVNAVHTMEELKL--TGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWF  209 (325)
Q Consensus       132 ~F~I~n~~~~~elk~--~gn~~kgsrPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVisF~~~dd~I~f  209 (325)
                      .|.+.++.+++|+..  .+|+..+++|+|+|+ +|....+ ++++++|+++|+.+..+.++++++|||++|++.+|.|||
T Consensus        78 ~f~i~~v~~~~~~~~~~~~~~~~~~~P~li~~-~~~~~~~-~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~~~~~I~~  155 (180)
T smart00879       78 DFKILNVSLRKELKGFKTGNCLTGSRPLLIFN-NFFTELG-KLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFF  155 (180)
T ss_pred             EEEEECcccHhhhhhhhcCCCcCCCccEEEEC-CCCCchH-HHHHHHHHHHCCCCCccccccCCCCEEEEEEecCCEEEE
Confidence            999999999999986  568889999999998 6665544 789999999999999998899999999999999999999


Q ss_pred             EEEEEeccCCCccccccCCcCceEEEEecceeeE
Q 020495          210 RNYQITVPHNESDKVARGGLDKMTLVEVGPRFCL  243 (325)
Q Consensus       210 RhY~I~~k~ses~~~~~~~~~~v~L~EIGPRf~L  243 (325)
                      |||+|.+.         .+.++++|+||||||+|
T Consensus       156 R~y~i~~~---------~~~~~v~l~eiGPr~~l  180 (180)
T smart00879      156 RHYRIKFG---------KKKPRVELQEIGPRFTL  180 (180)
T ss_pred             EEEEEEcc---------CCCCceEEEEecCCccC
Confidence            99999862         12368999999999986

The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.

>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]

Probab=100.00  E-value=2.6e-35  Score=270.62  Aligned_cols=202  Identities=21%  Similarity=0.315  Sum_probs=184.8

Q ss_pred             CCeEEEEecCCCCHHHHHHHHHHHhcCCCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeCCCCC
Q 020495           50 KEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGP  129 (325)
Q Consensus        50 ~~kvLI~~sr~~s~~~r~LmkDLr~L~P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rlP~GP  129 (325)
                      .||||||+||.+|+++.+|+|+|+.++||+.+   ++|+|..+..+++.|..+|+|.+|++.++++.|..|.++++|-||
T Consensus        82 dPKimvTTSR~PSsrL~~FaKelkLvfPNaqr---~nRG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL~vshlPfGP  158 (290)
T KOG2781|consen   82 DPKIMVTTSRDPSSRLKMFAKELKLVFPNAQR---LNRGNYVVGELVDAARANGVTDLIIVHEHRGIPDGLVVSHLPFGP  158 (290)
T ss_pred             CCcEEEEeCCCchHHHHHHHHhheEeccChhh---hcccceeHHHHHHHHHHCCCceEEEEeccCCCCCceEEEecCCCC
Confidence            79999999999999999999999999999886   889998899999999999999999999999999999999999999


Q ss_pred             eEEEEecceeehhhhhccCCCCCCCCCeEEEcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCEEEE
Q 020495          130 SVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWF  209 (325)
Q Consensus       130 Ti~F~I~n~~~~~elk~~gn~~kgsrPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVisF~~~dd~I~f  209 (325)
                      |+.|.+.|+.+.+|+...|+ ++..+|.|+|+ ||++..+. .+++++..+||.|...      .+|||+|.+.+|.|-|
T Consensus       159 Ta~Fsl~nvVmRhdip~~G~-msE~~phlIfd-Nf~t~lG~-Rv~~iLkhLFP~pk~d------s~Rvvtf~N~~DyIsF  229 (290)
T KOG2781|consen  159 TAFFSLHNVVMRHDIPDIGT-MSEQKPHLIFD-NFTTKLGK-RVKTILKHLFPVPKDD------SKRVVTFANRNDYISF  229 (290)
T ss_pred             ceEeeeeeeeeccccccccc-ccccCceEEec-cccchHHH-HHHHHHHHhCCCCcCC------cccEEEEecCCceEEE
Confidence            99999999999999998886 45679999997 99998886 5899999999988765      5899999999999999


Q ss_pred             EEEEEeccCCCccccccCCcCceEEEEecceeeEEEEEEecCCCC---CCeeeeCCCcCCHHHHHHH
Q 020495          210 RNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFG---GPTLYENPFYVSPNQVRKV  273 (325)
Q Consensus       210 RhY~I~~k~ses~~~~~~~~~~v~L~EIGPRf~LkL~KI~~G~f~---G~vLy~n~~~~Sp~~~r~~  273 (325)
                      |||.|....          ...++|.|+||||.|+|+.|-.|+++   +++.|....|......|..
T Consensus       230 Rhhvy~~~~----------~k~vel~evGPRfelklyeIrlGTlE~~~ad~EW~~rpY~nTa~kR~~  286 (290)
T KOG2781|consen  230 RHHVYKKTD----------GKEVELTEVGPRFELKLYEIRLGTLEIKDADVEWVLRPYMNTARKRDF  286 (290)
T ss_pred             EEEEEecCC----------CceEEEeeccccceeeeeeeeecceeccccceeEEecchhcchhhhhh
Confidence            999998543          24699999999999999999999986   9999999999887766654

>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]

Probab=100.00  E-value=1.3e-34  Score=268.79  Aligned_cols=193  Identities=21%  Similarity=0.327  Sum_probs=171.6

Q ss_pred             CCeEEEEecCCCCHHHHHHHHHHHhcCCCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeCCCCC
Q 020495           50 KEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGP  129 (325)
Q Consensus        50 ~~kvLI~~sr~~s~~~r~LmkDLr~L~P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rlP~GP  129 (325)
                      .+||||+++.+++.....|+..|+.++||+.-   ..+.+..++.++++|...++|+++++...++.++.|.|+++|+||
T Consensus        96 spKvlITt~~~~~~~t~~~~~eL~~iiPNs~~---~~R~~~~vk~i~~~a~~~eftdlvvV~edRkk~n~L~iihlP~GP  172 (302)
T KOG2780|consen   96 SPKVLITTSKNPKRTTYKFASELLDIIPNSTV---KKRDNYTVKSIVEIAIKREFTDLVVVNEDRKKPNGLKIIHLPNGP  172 (302)
T ss_pred             CccEEEEcCCCCcccHHHHHHHHHHhCCCceE---EecCCchHHHHHHHHHHhcCCceEEEecCcCCccceEEEecCCCC
Confidence            59999999999999999999999999999874   234466899999999999999999998777779999999999999


Q ss_pred             eEEEEecceeehhhhhccCCCCCCCCCeEEEcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCEEEE
Q 020495          130 SVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWF  209 (325)
Q Consensus       130 Ti~F~I~n~~~~~elk~~gn~~kgsrPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVisF~~~dd~I~f  209 (325)
                      |++|.+.||.+.+|++..|++ .+..|.|+.+ ||++..+.. +.+||+.+||.++...     .+||++||+++|.|+|
T Consensus       173 T~~Fkls~~~~~kdi~k~g~~-t~h~PElIlN-NFtTrlG~~-v~r~f~sLfp~~p~f~-----gRrvvtFhnQrD~IfF  244 (302)
T KOG2780|consen  173 TAYFKLSNVVLTKDIKKHGRP-TSHIPELILN-NFTTRLGMT-VGRLFASLFPHDPQFT-----GRRVVTFHNQRDYIFF  244 (302)
T ss_pred             ceEEEeecccchhhhhhcCCc-ccccchhhhh-cccchhhHH-HHHHHHHhCCCCcccc-----ceeEEEEEecCceEEE
Confidence            999999999999999999954 4589999997 999998875 8999999998766432     5999999999999999


Q ss_pred             EEEEEeccCCCccccccCCcCceEEEEecceeeEEEEEEecCCCC---CCeeeeCC
Q 020495          210 RNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFG---GPTLYENP  262 (325)
Q Consensus       210 RhY~I~~k~ses~~~~~~~~~~v~L~EIGPRf~LkL~KI~~G~f~---G~vLy~n~  262 (325)
                      |||+|.+++.+         .++.|+|+||||||+|.+.++|.|+   |+.-|...
T Consensus       245 RhhRY~Fkee~---------~kvglqElGPrfTLrL~~lq~G~fd~K~ge~~~~~~  291 (302)
T KOG2780|consen  245 RHHRYEFKEEE---------IKVGLQELGPRFTLRLRRLQKGTFDEKEGEFEWVHK  291 (302)
T ss_pred             EEEEEeecccc---------cccchhhcCCceeeeehhhhhccccccceeeeeeec
Confidence            99999998532         4789999999999999999999997   77777743

>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]

Probab=99.95  E-value=1.1e-28  Score=226.82  Aligned_cols=219  Identities=15%  Similarity=0.208  Sum_probs=195.5

Q ss_pred             CccccCCeEEEEecCCCCHHHHHHHHHHHhcC-CCCcccchhhccC-----CChhhHHHHhhhCCCCeEEEEEeecCCCC
Q 020495           45 GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLL-PHCKKDNKVEAKS-----SKGATLNELVELKSCSSCLFFECRKHKDL  118 (325)
Q Consensus        45 ~~~~n~~kvLI~~sr~~s~~~r~LmkDLr~L~-P~skk~~K~~~kn-----~~lk~l~~~a~~~~~s~~i~f~~~KK~~~  118 (325)
                      ...++.+..|++.+-..++.+.+.|-|+..+. |....   +.++|     ++..++++++++++|+..++|++.+|+++
T Consensus        22 klve~~k~AiF~pg~s~~k~lldvi~d~~alkkp~~i~---f~rkn~ihpfEd~SplEffseknd~~l~vl~ts~kKr~h   98 (316)
T COG5106          22 KLVEAHKDAIFYPGMSERKTLLDVICDTEALKKPKEIG---FIRKNTIHPFEDTSPLEFFSEKNDKKLSVLFTSVKKRRH   98 (316)
T ss_pred             hhhhhhhheEeccCcccchhhhhhhcchhhhccchhhc---cccCCcccccccCCHHHHHHHhhhhhhhhhhhhcccccc
Confidence            44677788888888889999999999999998 87665   66776     66678999999999999999999999999


Q ss_pred             eEEEEeCCCC---CeEEEEecceeehhhhhccCCCCCCCCCeEEEc-CCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCC
Q 020495          119 YLWMAKSPNG---PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFS-SNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYH  194 (325)
Q Consensus       119 ~L~i~rlP~G---PTi~F~I~n~~~~~elk~~gn~~kgsrPlLvF~-~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~  194 (325)
                      +|+++|+++.   +|++|.|.+|.+..|+..+| ...|.+|+++|+ .+|+.+|.|+.++++|.|||++.........++
T Consensus        99 nlt~~R~Fny~~~DMiEl~i~~yksvsdF~~~~-~~~g~Kpmv~fQg~~fd~hp~yr~iksLflDFFrges~~~ldsagl  177 (316)
T COG5106          99 NLTIGRAFNYELIDMIELKINRYKSVSDFECAG-PELGMKPMVVFQGINFDAHPTYRRIKSLFLDFFRGESSKVLDSAGL  177 (316)
T ss_pred             ceeEEeecchHHHHHHHHhhhhhhehhhhhccC-CccCCceEEEEeccccccchHHHHHHHHHHHHHcCCchhhhhhcce
Confidence            9999999999   89999999999999998876 456899999999 999999999999999999999988777777889


Q ss_pred             CEEEEEEEeCC--------EEEEEEEEEeccCCCccccccCCcCceEEEEecceeeEEEEEEecCCCCCCeeeeCCCcCC
Q 020495          195 DHVFVFSIVDD--------HIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVS  266 (325)
Q Consensus       195 drVisF~~~dd--------~I~fRhY~I~~k~ses~~~~~~~~~~v~L~EIGPRf~LkL~KI~~G~f~G~vLy~n~~~~S  266 (325)
                      .+||+-+.++.        .+.||+|.....++      .++.|+++|+|+|||++++++++              ...|
T Consensus       178 s~Vi~~t~~g~~~d~~plp~v~fRVyk~k~~kt------~~~lpr~elee~GPrldf~i~R~--------------~~~s  237 (316)
T COG5106         178 SWVIARTEEGYVLDTYPLPLVVFRVYKTKLLKT------KTNLPRLELEECGPRLDFEIVRS--------------YHCS  237 (316)
T ss_pred             eEEEEEecchhhhccccccceeeeeeecccccc------cCCCCceehhhcccceeeEEEee--------------cCCC
Confidence            99999998542        48999999887655      46789999999999999999999              7799


Q ss_pred             HHHHHHHhhhhcccccccccc
Q 020495          267 PNQVRKVLSFLLHFERKSLCS  287 (325)
Q Consensus       267 p~~~r~~~k~~~~l~~k~~~~  287 (325)
                      ++++.+++++|+++|+|.+|-
T Consensus       238 ~d~~~ealkkPk~~e~KpkKN  258 (316)
T COG5106         238 DDLYKEALKKPKTQEPKPKKN  258 (316)
T ss_pred             hHHHHHHhcCccccCCCcccc
Confidence            999999999999999988763

>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]

Probab=99.82  E-value=3.3e-19  Score=161.17  Aligned_cols=181  Identities=22%  Similarity=0.272  Sum_probs=157.5

Q ss_pred             CeEEEEecCCCCHHHHHHHHHHHhcCCCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeC-CCCC
Q 020495           51 EKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKS-PNGP  129 (325)
Q Consensus        51 ~kvLI~~sr~~s~~~r~LmkDLr~L~P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rl-P~GP  129 (325)
                      +++||||||++|.++++|++||..++|++..   ..+.+.++..+.+.|...|.+.+++..+.++.|..|.+.++ |.||
T Consensus         2 ~~~liTTSRkPS~Rtr~Fak~L~~~lp~~~~---~~rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~~   78 (191)
T COG2136           2 PKMLLTTSRKPSRRTRSFAKDLSRVLPNAYF---LRRGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEGL   78 (191)
T ss_pred             CcEEEEecCCccHHHHHHHHHHHHhCCcceE---EecCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCCc
Confidence            6899999999999999999999999999875   33444477899999999999999999999999999999999 9999


Q ss_pred             eEEEEecceeehhhhhccCCCCCCCCCeEEEcCCCCChhhHHHHHHHHHhc----CCCCCCCCCCCCCCCEEEEEEEeCC
Q 020495          130 SVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQI----FGTPKEHRKSKPYHDHVFVFSIVDD  205 (325)
Q Consensus       130 Ti~F~I~n~~~~~elk~~gn~~kgsrPlLvF~~~F~~~~hlklik~lf~~~----F~~p~~~~~s~~~~drVisF~~~dd  205 (325)
                      ++.|.+.++++.+|+...++....+-|.++++ +|.+..+.+.+.++|..+    |+....-     ....|+.++.+++
T Consensus        79 ~~~f~l~~v~l~re~~~~~~~~~~~~~~~I~~-~~~~~~g~~~~~~~~~~~~~~~f~~~~~~-----~~~~v~~~~~~~~  152 (191)
T COG2136          79 TFSFKLSGVKLRREIPVLGPKSRLHGPELIFN-NFTTLLGFLKVAEAFSELLLVKFVPNPAW-----EHELVATGANKGD  152 (191)
T ss_pred             eEEEEEecceEEEeccccCCcccCCCCceeee-cccccccchhhHHHHHhhcccccccCccc-----ceeeeeeccccce
Confidence            99999999999999988776445678999997 999988877788999888    6432221     2478999999999


Q ss_pred             EEEEEEEEEeccCCCccccccCCcCceEEEEecceeeEEEEEEecC
Q 020495          206 HIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGG  251 (325)
Q Consensus       206 ~I~fRhY~I~~k~ses~~~~~~~~~~v~L~EIGPRf~LkL~KI~~G  251 (325)
                      .+.||.|.+.+..           ..+.+.|+||||+|++-++++|
T Consensus       153 f~~~~~~~~~~~~-----------~~~~~~~vgp~~~~r~~~~~~g  187 (191)
T COG2136         153 FKSLRRHRRVFEE-----------DGIGLEEVGPRLTLRLWRMEDG  187 (191)
T ss_pred             EEEEEeeeeEeee-----------eeeeEEEeCceeeeehhhhhhc
Confidence            9999999888763           3689999999999999999988

>PRK03972 ribosomal biogenesis protein; Validated

Probab=99.75  E-value=6.7e-17  Score=147.49  Aligned_cols=180  Identities=15%  Similarity=0.107  Sum_probs=138.7

Q ss_pred             EEEEecCCCCHHHHHHHHHHHhcCCCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeCCCC---C
Q 020495           53 VLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG---P  129 (325)
Q Consensus        53 vLI~~sr~~s~~~r~LmkDLr~L~P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rlP~G---P  129 (325)
                      +|||+|+.+|+++++|++||..++||+..   ++|++..+++|.+.|..+|.++++++.+.++.|+.|.|.++|+|   |
T Consensus         2 iLITTSr~PS~rtr~F~keL~~v~Pns~~---i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GP   78 (208)
T PRK03972          2 MLITTSHRPTRRTRSFGHDLERVFPNSLY---LTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGY   78 (208)
T ss_pred             EEEECCCCccHHHHHHHHHHHHhCCCCEE---EecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCc
Confidence            79999999999999999999999999975   66777789999999999999999999999999999999999865   5


Q ss_pred             eEEEEecceeehhhh--hccCCCCCCCCCeEEEcCCCCChhhHHHHHHHHHhcCCCCCCCC--CCC------CCCCEEEE
Q 020495          130 SVKFLVNAVHTMEEL--KLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHR--KSK------PYHDHVFV  199 (325)
Q Consensus       130 Ti~F~I~n~~~~~el--k~~gn~~kgsrPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~--~s~------~~~drVis  199 (325)
                      |++|+|+|+.+.+|+  +..|. ...+.|++|.+ +|.+.+.+......+-.-++.+-..+  .|+      .+.+-|++
T Consensus        79 Ta~FkLsnV~l~~ei~~~~~~~-~s~~~p~iItt-s~kt~~g~~~~Ak~lA~eLgi~yV~R~k~Sl~~L~~~~~~d~vLV  156 (208)
T PRK03972         79 LGYLYLHGIKLQREMGFRNLRP-IREDMPLVITT-AKRVGLDHMAFAQVFAELTGGKFVPRGGKSLQDIADKYNTDVLGV  156 (208)
T ss_pred             eEEEEEccEEEHHHcccCCCCC-ccccccEEEEc-CCCCCHHHHHHHHHHHHHhCCceeCcCCcCHHHHHhhhcCceEEE
Confidence            999999999999999  44554 45689998885 99998865333444556666654444  232      23366666


Q ss_pred             EEEeCCEEEEEEEEEeccCCCccccccCCcCceEEEEecceeeEEEEEEecCC
Q 020495          200 FSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGS  252 (325)
Q Consensus       200 F~~~dd~I~fRhY~I~~k~ses~~~~~~~~~~v~L~EIGPRf~LkL~KI~~G~  252 (325)
                      +.----..-+-.|++...+               -.-+||-+-.+.-..++|-
T Consensus       157 V~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~  194 (208)
T PRK03972        157 IERHPRGMAVNFYRLDVTK---------------ERPVGPLIFVKIWIMEDGR  194 (208)
T ss_pred             EecCCCceEEEEEEecccc---------------ccccCCcEEEEEEEeccCc
Confidence            6543333456667776542               2457999888877776663

>PRK00933 ribosomal biogenesis protein; Validated

Probab=97.60  E-value=0.0019  Score=57.64  Aligned_cols=97  Identities=21%  Similarity=0.227  Sum_probs=67.9

Q ss_pred             EEEEecCCCCHHHHHHHHHHHhcCCCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeCCCCCeEE
Q 020495           53 VLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVK  132 (325)
Q Consensus        53 vLI~~sr~~s~~~r~LmkDLr~L~P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rlP~GPTi~  132 (325)
                      ++||||++++.++++++++|...+ ++..   +.|++..++++.+.|   +...++++++.++.|+.|.+-..-+.+.+.
T Consensus         1 mIITTSrkPs~~t~~fAkeLa~~l-n~~y---v~Rgk~Sl~eL~~~~---~~~~llVV~E~kg~P~~L~iyd~~~~~~~~   73 (165)
T PRK00933          1 MIITTSRKPSQRTRSLVKDLARFL-NCKY---VNRGKMSLQELLEEC---EARYLLIIGEYKGNPGALKFYDVEGNKLLS   73 (165)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHh-CCEE---EccCCccHHHHHHHh---ccCcEEEEECCCCCCceEEEEECCCCEEEE
Confidence            379999999999999999999999 7644   345544666665443   345888888888899999999987777666


Q ss_pred             EEecceeehhhhhccCCCCCCCCCeEE
Q 020495          133 FLVNAVHTMEELKLTGNHLKASRPLLT  159 (325)
Q Consensus       133 F~I~n~~~~~elk~~gn~~kgsrPlLv  159 (325)
                      +.+. +..-.|...  ...++.+|.+.
T Consensus        74 ~~~~-v~~~~~~~~--~~~~~~~p~~~   97 (165)
T PRK00933         74 YRLS-VKLQREISG--PVFKNRRPIKS   97 (165)
T ss_pred             EEEE-eeeecccCc--ceeecCCCccc
Confidence            6553 444444432  13445566443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	325
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 57/356 (16%), Positives = 117/356 (32%), Gaps = 97/356 (27%)

Query: 7   HTEIIEPTKKDDSVTEER----------PKRTLLGWKDKIEIKE-----TEAPGVFRN-- 49
            TE  +P+       E+R           K  +   +  +++++       A  V  +  
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 50  ----KEKVLV--TCSRR------------INFRYRH----LMLNVVSLLPHCKKDNKVEA 87
               K   +    C               +N +  +    ++  +  LL     +    +
Sbjct: 159 LGSGKT-WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 88  KSSKGATLNELVELKSCSSCLFFECRKHKDLYL-----WMAKSPN--GPSVKFLVNAVHT 140
             S    L  +  +++    L    + +++  L       AK+ N    S K L+    T
Sbjct: 218 DHSSNIKLR-IHSIQAELRRLLKS-KPYENCLLVLLNVQNAKAWNAFNLSCKILL----T 271

Query: 141 MEELKLTGNHLKASR----PLLTFSSNFGKDAHWKLIKEMIIQIFGT-----PKEHRKSK 191
               ++T + L A+      L   S     D     +K ++++         P+E   + 
Sbjct: 272 TRFKQVT-DFLSAATTTHISLDHHSMTLTPDE----VKSLLLKYLDCRPQDLPREVLTTN 326

Query: 192 PYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGG 251
           P    +   SI D    + N++    H   DK+        T++E      LN ++    
Sbjct: 327 PRRLSIIAESIRDGLATWDNWK----HVNCDKLT-------TIIES----SLNVLE---- 367

Query: 252 SFGGPTLYENPFY---VSPNQVR---KVLSFLLHFERKSLCSICIVDKIVLKTLMD 301
               P  Y   F    V P        +LS L+ F+      + +V+K+   +L++
Sbjct: 368 ----PAEYRKMFDRLSVFPPSAHIPTILLS-LIWFDVIKSDVMVVVNKLHKYSLVE 418

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
2cxh_A	217	Probable BRIX-domain ribosomal biogenesis protein;	99.92
1w94_A	156	MIL, probable BRIX-domain ribosomal biogenesis pro	99.09

>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2

Probab=99.92  E-value=6.6e-25  Score=200.61  Aligned_cols=133  Identities=14%  Similarity=0.146  Sum_probs=123.1

Q ss_pred             cCCeEEEEecCCCCHHHHHHHHHHHhcCCCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeCCCC
Q 020495           49 NKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG  128 (325)
Q Consensus        49 n~~kvLI~~sr~~s~~~r~LmkDLr~L~P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rlP~G  128 (325)
                      .++|+||||||++|.++++|++||..++||+.+   ++|++..+++|.+.|..++|+++++++++++.|.+|||.++|+|
T Consensus        32 ~~pKvLITTSr~pS~r~r~fakeL~~~lPns~~---i~Rgk~sLkeL~e~a~~~~~tdlivV~e~rg~p~~L~~~hlP~G  108 (217)
T 2cxh_A           32 GGYRILVTTSRRPSPRIRSFVKDLSATIPGAFR---FTRGHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYAVEGP  108 (217)
T ss_dssp             -CCEEEEEESSSCCHHHHHHHHHHHTTSTTEEE---CCCTTCCHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEECCSS
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHHHCCCCEE---eecCCcCHHHHHHHHHhCCCCEEEEEEecCCCCcEEEEEECCCC
Confidence            489999999999999999999999999999875   44566689999999999999999999999988999999999999


Q ss_pred             ---C-eEEEEecceeehhhhhccCCCCCCCCCeEEEcCCCCChhhHHHHHHHHHhcCCCCCCC
Q 020495          129 ---P-SVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEH  187 (325)
Q Consensus       129 ---P-Ti~F~I~n~~~~~elk~~gn~~kgsrPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~  187 (325)
                         | |++|+|.|+++++|++.+||+..+++|.|+  .+|++. +.+++++||+++|+.|...
T Consensus       109 ~~~P~Ta~F~I~nv~l~~ei~~~g~~~~~~rP~L~--~nF~t~-~g~~i~~~f~~lFp~P~~~  168 (217)
T 2cxh_A          109 ERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVA--RPLDSG-VAVEFADAFVIAFHARLKP  168 (217)
T ss_dssp             SCCEEEEEEEEEEEECHHHHTCCCCCCCSCCEEEE--EESSSS-THHHHHHHHHHHHCCBSSC
T ss_pred             CCCCcEEEEEEeeEEehhhhccCCCccCCCCceEE--eeecCc-hHHHHHHHHHHHcCCCCCC
Confidence               9 999999999999999999999999999999  489987 7889999999999998763

>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2

Probab=99.09  E-value=3e-10  Score=98.77  Aligned_cols=85  Identities=11%  Similarity=0.018  Sum_probs=71.9

Q ss_pred             eEEEEecCCCCHHHHHHHHHHHhcCCCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeCCCCCeE
Q 020495           52 KVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSV  131 (325)
Q Consensus        52 kvLI~~sr~~s~~~r~LmkDLr~L~P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rlP~GPTi  131 (325)
                      |++||||+++|.++++++++|..++ ++..   +.|++..+++|.+.|...    ++++.++++.|+.|.+.++|+|||+
T Consensus         1 kilITTSr~Ps~~l~~fakeLa~~l-n~~~---v~Rgk~sl~~L~~~~~~~----~iVV~e~rg~P~~l~i~hlp~gpt~   72 (156)
T 1w94_A            1 HMLLTTSRKPSQRTRSFSQRLSRIM-GWRY---INRGKMSLRDVLIEARGP----VAVVSERHGNPARITFLDERGGERG   72 (156)
T ss_dssp             CCEEEECSSCCHHHHHHHHHHHHHH-TCEE---CCCTTCCHHHHHHHHSSC----EEEEEEETTEEEEEEEECTTSCEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHh-CCEE---EeeCCcCHHHHHHhcCCC----EEEEEcCCCCCCeEEEEeCCCCCEE
Confidence            5799999999999999999999999 7764   556665788888777443    6666666667999999999999999


Q ss_pred             EEEecceeehhhhh
Q 020495          132 KFLVNAVHTMEELK  145 (325)
Q Consensus       132 ~F~I~n~~~~~elk  145 (325)
                      +|++ |+.+.+|+.
T Consensus        73 ~f~~-nv~l~~~~~   85 (156)
T 1w94_A           73 YILF-NPSFEMKKP   85 (156)
T ss_dssp             EEEE-EEEECSSCC
T ss_pred             EEEE-ceEEcccCc
Confidence            9999 999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	325
d2cxha1	180	c.51.1.2 (A:13-192) Probable ribosomal biogenesis	1e-12

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 180

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 62.9 bits (153), Expect = 1e-12
 Identities = 24/178 (13%), Positives = 51/178 (28%), Gaps = 32/178 (17%)

Query: 52  KVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVEL---KSCSSCL 108
           ++LVT SRR + R R  + ++ + +P   +  +         ++ EL      +     +
Sbjct: 3   RILVTTSRRPSPRIRSFVKDLSATIPGAFRFTR------GHYSMEELAREAIIRGADRIV 56

Query: 109 FFECRKHKDLYLWMAKSPNGPS-----VKFLVNAVHTMEELKLTGNHLKASRPLLT---- 159
                +  +  +    +  GP      V F+V  V    E +     L+    L+     
Sbjct: 57  VVG-ERRGNPGIIRVYAVEGPERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLD 115

Query: 160 --FSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQIT 215
              +  F                   P+             V   +D       ++  
Sbjct: 116 SGVAVEFA-----DAFVIAFHARLKPPEA------AGYVEAVIESLDARTVAVTFRYG 162

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	325
d2cxha1	180	Probable ribosomal biogenesis protein {Archaeon Ae	99.94
d1w94a1	154	Probable ribosomal biogenesis protein {Methanobact	99.75

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.94  E-value=3.6e-27  Score=207.89  Aligned_cols=152  Identities=14%  Similarity=0.093  Sum_probs=130.0

Q ss_pred             eEEEEecCCCCHHHHHHHHHHHhcCCCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeCCCCC--
Q 020495           52 KVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGP--  129 (325)
Q Consensus        52 kvLI~~sr~~s~~~r~LmkDLr~L~P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rlP~GP--  129 (325)
                      |||||+||++|+++++|++||+.++||+..   ++|+++.+++|+++|..+|||++++++++++.| +||++++|+||  
T Consensus         3 kvLITTSr~ps~~~r~f~kdL~~v~Pns~~---~~R~k~~lk~i~~~a~~~~~t~liiv~e~~~~p-~l~i~~lP~GP~~   78 (180)
T d2cxha1           3 RILVTTSRRPSPRIRSFVKDLSATIPGAFR---FTRGHYSMEELAREAIIRGADRIVVVGERRGNP-GIIRVYAVEGPER   78 (180)
T ss_dssp             EEEEEESSSCCHHHHHHHHHHHTTSTTEEE---CCCTTCCHHHHHHHHHHTTEEEEEEEEEETTEE-EEEEEEECCSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhCCCCEE---eecCCCcHHHHHHHHHHCCCCeEEEEEccCCCC-cEEEEECCCCCCC
Confidence            799999999999999999999999999875   456666999999999999999999999998766 79999999999  


Q ss_pred             ---eEEEEecceeehhhhhccCCC---CCCCCCeEEEcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEe
Q 020495          130 ---SVKFLVNAVHTMEELKLTGNH---LKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIV  203 (325)
Q Consensus       130 ---Ti~F~I~n~~~~~elk~~gn~---~kgsrPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVisF~~~  203 (325)
                         |++|+|.|+.+.+|++.....   ...+.|.++|+ +|.+..+. ++..+|...|+.|...      .++|++|+++
T Consensus        79 ~~~t~~F~l~nv~l~~e~~~~~~~~~~~t~~~p~liln-nf~t~Lg~-~~~~~f~~lf~~p~~~------~~~vvt~~n~  150 (180)
T d2cxha1          79 PDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLDS-GVAVEFAD-AFVIAFHARLKPPEAA------GYVEAVIESL  150 (180)
T ss_dssp             CEEEEEEEEEEEECHHHHTCCCCCCCSCCEEEEEESSS-STHHHHHH-HHHHHHCCBSSCCSSS------CEEEEEEEEE
T ss_pred             ccceEEEEEEEEEEehhhccccCCCCCCccccchhHhc-ccchHHHH-HHHHHHHhhCCCchhc------CcEEEEEEec
Confidence               999999999999999753211   12357888886 99876643 5788999999765432      4899999999


Q ss_pred             CCEEEEEEEEEe
Q 020495          204 DDHIWFRNYQIT  215 (325)
Q Consensus       204 dd~I~fRhY~I~  215 (325)
                      +|.||+|+|++.
T Consensus       151 ~d~if~~~~~~~  162 (180)
T d2cxha1         151 DARTVAVTFRYG  162 (180)
T ss_dssp             ETTEEEEEEECS
T ss_pred             CCeEEEEEEecC
Confidence            999999999974

>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.75  E-value=3.3e-19  Score=152.87  Aligned_cols=134  Identities=10%  Similarity=0.073  Sum_probs=113.1

Q ss_pred             EEEEecCCCCHHHHHHHHHHHhcCCCCcccchhhccCCChhhHHHHhhhCCCCeEEEEEeecCCCCeEEEEeCCCCCeEE
Q 020495           53 VLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVK  132 (325)
Q Consensus        53 vLI~~sr~~s~~~r~LmkDLr~L~P~skk~~K~~~kn~~lk~l~~~a~~~~~s~~i~f~~~KK~~~~L~i~rlP~GPTi~  132 (325)
                      +|||+||.+|+++++|++||..++|++ .   ++|++..++++.+.|    .++++++.+.++.|+.|.+ ++|+|||+.
T Consensus         1 vLITTSr~PS~rtr~F~keL~~i~P~~-~---~~Rgk~~lkelv~~~----~tdlivv~E~rg~P~~l~i-h~p~gpt~~   71 (154)
T d1w94a1           1 MLLTTSRKPSQRTRSFSQRLSRIMGWR-Y---INRGKMSLRDVLIEA----RGPVAVVSERHGNPARITF-LDERGGERG   71 (154)
T ss_dssp             CEEEECSSCCHHHHHHHHHHHHHHTCE-E---CCCTTCCHHHHHHHH----SSCEEEEEEETTEEEEEEE-ECTTSCEEE
T ss_pred             CEEECCCCccHHHHHHHHHHHHhCCCe-E---EEcCCCcHHHHHHhC----CCcEEEEECCCCCCceEEE-EeCCCCcEE
Confidence            589999999999999999999999974 3   567666888887766    4788888888888999988 999999999


Q ss_pred             EEecceeehhhhhccCCCCCCCCCeEEEcCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCEEEEEEE
Q 020495          133 FLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNY  212 (325)
Q Consensus       133 F~I~n~~~~~elk~~gn~~kgsrPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVisF~~~dd~I~fRhY  212 (325)
                      |.+.|+.+.+|           +|.++++ +|.+....+ +.++|..+|+.+....    +-++|++|++++|.|+++||
T Consensus        72 f~l~~v~l~~e-----------~p~li~~-~f~t~lg~~-v~~~L~~lf~~~~~~~----~~~~~itf~n~~d~i~~~~~  134 (154)
T d1w94a1          72 YILFNPSFEMK-----------KPELADK-AVRVSSCPP-GSEGLCNLMGLEVDES----SSRDAWSIRTDEEYAWVMEL  134 (154)
T ss_dssp             EEEEEEEECSS-----------CCCCSSC-CCEESCCCT-TCHHHHHHHTCEECCS----CCTTEEEEECCSSSSEEEEE
T ss_pred             EEEeeEEcccc-----------CCcCccc-ccccccchh-HHHHHHHHcCCChhhc----ceeeEEEEecCCCEEEEEEE
Confidence            99999987765           6888886 899876654 6689999999776543    12559999999999999999