Citrus Sinensis ID: 020508

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF
cHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHcccccccccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEccccccccccHHHHHHHccccEEEEccccHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHcccEEEEccccccccccccHHHHHHHccccEEEccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEccccEEEc
cccEEEcccccHHHHcccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHccccEEEccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHccccEEEEEEcccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEEcccccccccHHHHHHHccccEEEEEcccccHHHHHHHHHHcccEEEEccccccccHHHHHHccccEEEEEcccccccccccHHHHHHHccccEEEEEEEEcccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccEEEEc
MPLLRRLSSSLQQVVKFTNRsfkslkfpgepiessvsptlthgihvfhcpdeVGIVAKLSECIAsrggnilaadvfvpekknvfysrsefifdpikwpreqmdEDFFKLSKMFNAMRsvvrvpdidpkYKVAVLASKQEHCLVDFLygwqegklpvEITCVisnhdrgpnshVIRFLErhgipyhylcaKENEREEELLELVQNTDFLVLARYMQILSGKFLrsygkdvinihhgllpsfkggkpakQAFDAGVKLIgatshfvteeldagpiIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCelrvlpyemnktvvf
mpllrrlsssLQQVVKFTnrsfkslkfpgePIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSefifdpikwprEQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKsycelrvlpyemnktvvf
MPllrrlssslQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKenereeellelVQNTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF
***************************************LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMN*****
*******************************************IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF
MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF
****RRLSSSLQQVVKFTNR*******************LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF
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SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query325 2.2.26 [Sep-21-2011]
O34990300 Formyltetrahydrofolate de yes no 0.824 0.893 0.395 6e-52
Q55135284 Formyltetrahydrofolate de N/A no 0.821 0.940 0.393 2e-49
P0A5T6310 Formyltetrahydrofolate de yes no 0.827 0.867 0.378 1e-43
P0A5T7310 Formyltetrahydrofolate de yes no 0.827 0.867 0.378 1e-43
Q03432278 Formyltetrahydrofolate de yes no 0.796 0.931 0.374 8e-39
Q46339286 Formyltetrahydrofolate de N/A no 0.833 0.947 0.350 3e-38
P0A441280 Formyltetrahydrofolate de yes no 0.793 0.921 0.317 4e-37
P0A440280 Formyltetrahydrofolate de yes no 0.793 0.921 0.317 4e-37
P37051280 Formyltetrahydrofolate de N/A no 0.793 0.921 0.317 4e-37
P218721003 Trifunctional purine bios yes no 0.544 0.176 0.333 9e-18
>sp|O34990|PURU_BACSU Formyltetrahydrofolate deformylase OS=Bacillus subtilis (strain 168) GN=purU PE=3 SV=2 Back     alignment and function desciption
 Score =  204 bits (520), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 112/283 (39%), Positives = 171/283 (60%), Gaps = 15/283 (5%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFF 107
           CPD+ GIV+ +S  +   G NI+ ++ +  + +   F+ R EF    I+  +  +   F 
Sbjct: 26  CPDQPGIVSAVSAFLFEHGANIIESNQYTTDPEGGRFFLRIEFDCAGIREKKSSLQAAFA 85

Query: 108 KLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR 167
            +++ F+   S+    ++    +VA+  SK+ HCL + ++ WQ G L  EI  VISNH+ 
Sbjct: 86  SVAEKFDMTWSLTLASELK---RVAIFVSKELHCLHELIWEWQTGNLMAEIAVVISNHEE 142

Query: 168 GPNSHVIRFLERHGIPYHYLCAKENER---EEELLELVQ--NTDFLVLARYMQILSGKFL 222
                    +ER  IP+HY+ A ++ R   E++ LEL++  + D +VLARYMQIL+  F+
Sbjct: 143 AR-----ELVERLNIPFHYMKANKDIRAEVEKKQLELLEQYDVDVIVLARYMQILTPDFV 197

Query: 223 RSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVS 282
            ++   +INIHH  LP+F G  P K+A++ GVKLIGATSH+VT +LD GPIIEQ +ERV 
Sbjct: 198 SAHPNRIINIHHSFLPAFIGANPYKRAYERGVKLIGATSHYVTNDLDEGPIIEQDIERVD 257

Query: 283 HRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 325
           HRDN          +E+  LA+A+K + E RV+ +E NKT+VF
Sbjct: 258 HRDNAEALKNIGRTIERSVLARAVKWHLEDRVIVHE-NKTIVF 299

Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 0
>sp|Q55135|PURU_SYNY3 Formyltetrahydrofolate deformylase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=purU PE=3 SV=1 Back     alignment and function description
>sp|P0A5T6|PURU_MYCTU Formyltetrahydrofolate deformylase OS=Mycobacterium tuberculosis GN=purU PE=3 SV=1 Back     alignment and function description
>sp|P0A5T7|PURU_MYCBO Formyltetrahydrofolate deformylase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=purU PE=3 SV=1 Back     alignment and function description
>sp|Q03432|PURU_HAEIN Formyltetrahydrofolate deformylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=purU PE=3 SV=2 Back     alignment and function description
>sp|Q46339|PURU_CORS1 Formyltetrahydrofolate deformylase OS=Corynebacterium sp. (strain P-1) GN=purU PE=3 SV=1 Back     alignment and function description
>sp|P0A441|PURU_SHIFL Formyltetrahydrofolate deformylase OS=Shigella flexneri GN=purU PE=3 SV=1 Back     alignment and function description
>sp|P0A440|PURU_ECOL6 Formyltetrahydrofolate deformylase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=purU PE=3 SV=1 Back     alignment and function description
>sp|P37051|PURU_ECOLI Formyltetrahydrofolate deformylase OS=Escherichia coli (strain K12) GN=purU PE=1 SV=1 Back     alignment and function description
>sp|P21872|PUR2_CHICK Trifunctional purine biosynthetic protein adenosine-3 OS=Gallus gallus GN=GART PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
359495984329 PREDICTED: formyltetrahydrofolate deform 1.0 0.987 0.805 1e-156
449458970326 PREDICTED: formyltetrahydrofolate deform 1.0 0.996 0.766 1e-149
224074167317 formyltetrahydrofolate deformylase [Popu 0.953 0.977 0.783 1e-147
358248700316 uncharacterized protein LOC100780134 [Gl 0.969 0.996 0.769 1e-146
356563338316 PREDICTED: formyltetrahydrofolate deform 0.969 0.996 0.763 1e-145
224138620317 formyltetrahydrofolate deformylase [Popu 0.910 0.933 0.785 1e-142
357502477324 Formyltetrahydrofolate deformylase [Medi 0.981 0.984 0.753 1e-141
217071818324 unknown [Medicago truncatula] 0.981 0.984 0.753 1e-141
388513597322 unknown [Medicago truncatula] 0.981 0.990 0.753 1e-141
89257492332 formyltetrahydrofolate deformylase, puta 0.923 0.903 0.777 1e-140
>gi|359495984|ref|XP_003635126.1| PREDICTED: formyltetrahydrofolate deformylase-like [Vitis vinifera] gi|297744389|emb|CBI37363.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 265/329 (80%), Positives = 294/329 (89%), Gaps = 4/329 (1%)

Query: 1   MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPI---ESSVSPTLTHGIHVFHCPDEVGIVA 57
           M L RRLS+SL Q++ FTNRSFKSLKFP + +    SS   +L HGIHVFHCPD VGIVA
Sbjct: 1   MSLRRRLSTSLPQLLGFTNRSFKSLKFPQQSLHCFNSSSESSLAHGIHVFHCPDGVGIVA 60

Query: 58  KLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117
           KLS+CIASRGGNIL AD+FVPE K VFYSRSEFIFDP KWPR QMDEDF KLS MFNAM+
Sbjct: 61  KLSDCIASRGGNILGADIFVPENKKVFYSRSEFIFDPAKWPRAQMDEDFLKLSNMFNAMK 120

Query: 118 SVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL 177
           SVVRVP +DPKYK++VLASKQ+HCLVD L+GWQ+G+LPV+ITCVISNHDRGPN+HV RFL
Sbjct: 121 SVVRVPILDPKYKISVLASKQDHCLVDLLHGWQDGRLPVDITCVISNHDRGPNTHVFRFL 180

Query: 178 ERHGIPYHYL-CAKENEREEELLELVQNTDFLVLARYMQILSGKFLRSYGKDVINIHHGL 236
           ERHGIPYHYL   KEN+RE E+L+LVQ+TDFLVLARYMQILSG FL+SYGKD+INIHHGL
Sbjct: 181 ERHGIPYHYLHTTKENKREGEILDLVQDTDFLVLARYMQILSGNFLKSYGKDIINIHHGL 240

Query: 237 LPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSED 296
           LPSFKGG P+KQAFDAGVKLIGATSHFVTEELDAGPII QMVERV HRDNL++FVQKSE+
Sbjct: 241 LPSFKGGNPSKQAFDAGVKLIGATSHFVTEELDAGPIIGQMVERVCHRDNLKSFVQKSEN 300

Query: 297 VEKQCLAKAIKSYCELRVLPYEMNKTVVF 325
           +EKQCL KAIKSYCELRVLPYE NKTVVF
Sbjct: 301 LEKQCLVKAIKSYCELRVLPYEDNKTVVF 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449458970|ref|XP_004147219.1| PREDICTED: formyltetrahydrofolate deformylase-like [Cucumis sativus] gi|449504944|ref|XP_004162337.1| PREDICTED: formyltetrahydrofolate deformylase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224074167|ref|XP_002304283.1| formyltetrahydrofolate deformylase [Populus trichocarpa] gi|222841715|gb|EEE79262.1| formyltetrahydrofolate deformylase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358248700|ref|NP_001240181.1| uncharacterized protein LOC100780134 [Glycine max] gi|255636588|gb|ACU18632.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356563338|ref|XP_003549921.1| PREDICTED: formyltetrahydrofolate deformylase-like [Glycine max] Back     alignment and taxonomy information
>gi|224138620|ref|XP_002326648.1| formyltetrahydrofolate deformylase [Populus trichocarpa] gi|222833970|gb|EEE72447.1| formyltetrahydrofolate deformylase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357502477|ref|XP_003621527.1| Formyltetrahydrofolate deformylase [Medicago truncatula] gi|355496542|gb|AES77745.1| Formyltetrahydrofolate deformylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|217071818|gb|ACJ84269.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388513597|gb|AFK44860.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|89257492|gb|ABD64983.1| formyltetrahydrofolate deformylase, putative [Brassica oleracea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
TAIR|locus:2130893328 AT4G17360 [Arabidopsis thalian 0.950 0.942 0.735 8e-124
TAIR|locus:505006677323 AT5G47435 [Arabidopsis thalian 0.932 0.938 0.743 4.4e-123
TIGR_CMR|DET_1237284 DET_1237 "formyltetrahydrofola 0.830 0.950 0.340 1.2e-40
UNIPROTKB|G4MX54284 MGG_08008 "Formyltetrahydrofol 0.824 0.943 0.378 2e-40
TIGR_CMR|CPS_2482292 CPS_2482 "formyltetrahydrofola 0.867 0.965 0.354 9.9e-39
TIGR_CMR|CPS_4036292 CPS_4036 "formyltetrahydrofola 0.867 0.965 0.354 9.9e-39
TIGR_CMR|CPS_4357286 CPS_4357 "formyltetrahydrofola 0.846 0.961 0.349 2.6e-38
TIGR_CMR|CPS_3620292 CPS_3620 "formyltetrahydrofola 0.867 0.965 0.347 1.5e-37
UNIPROTKB|Q9KQK6277 VC_1992 "Formyltetrahydrofolat 0.806 0.945 0.346 1.3e-36
TIGR_CMR|VC_1992277 VC_1992 "formyltetrahydrofolat 0.806 0.945 0.346 1.3e-36
TAIR|locus:2130893 AT4G17360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1217 (433.5 bits), Expect = 8.0e-124, P = 8.0e-124
 Identities = 228/310 (73%), Positives = 261/310 (84%)

Query:    17 FTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76
             FT  SFKS +F GE ++SSVSP L  G HVFHCPD VGIVAKLS+CIA++GGNIL  DVF
Sbjct:    19 FTKWSFKSSQFHGESLDSSVSPLLIPGFHVFHCPDVVGIVAKLSDCIAAKGGNILGYDVF 78

Query:    77 VPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLAS 136
             VPE KNVFYSRSEFIFDP+KWPR QMDEDF  +++ F+A+ SVVRVP +DPKYK+A+L S
Sbjct:    79 VPENKNVFYSRSEFIFDPVKWPRRQMDEDFQTIAQKFSALSSVVRVPSLDPKYKIALLLS 138

Query:   137 KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKXXXXX 195
             KQ+HCLV+ L+ WQ+GKLPV+ITCVISNH+R PN+HV+RFL+RHGI YHYL         
Sbjct:   139 KQDHCLVEMLHKWQDGKLPVDITCVISNHERAPNTHVMRFLQRHGISYHYLPTTDQNKIE 198

Query:   196 XXXXXXVQNTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVK 255
                   V+ TDFLVLARYMQ+LSG FL+ YGKDVINIHHGLLPSFKG  P KQAFDAGVK
Sbjct:   199 EEILELVKGTDFLVLARYMQLLSGNFLKGYGKDVINIHHGLLPSFKGRNPVKQAFDAGVK 258

Query:   256 LIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVL 315
             LIGAT+HFVTEELD+GPIIEQMVERVSHRDNLR+FVQKSED+EK+CL KAIKSYCELRVL
Sbjct:   259 LIGATTHFVTEELDSGPIIEQMVERVSHRDNLRSFVQKSEDLEKKCLMKAIKSYCELRVL 318

Query:   316 PYEMNKTVVF 325
             PY   +TVVF
Sbjct:   319 PYGTQRTVVF 328
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA
GO:0008168 "methyltransferase activity" evidence=IEA
GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=IEA;ISS
GO:0009058 "biosynthetic process" evidence=IEA;ISS
GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS
GO:0016742 "hydroxymethyl-, formyl- and related transferase activity" evidence=IEA;ISS
GO:0009853 "photorespiration" evidence=IMP
GO:0046653 "tetrahydrofolate metabolic process" evidence=IMP
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0043085 "positive regulation of catalytic activity" evidence=RCA
TAIR|locus:505006677 AT5G47435 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1237 DET_1237 "formyltetrahydrofolate deformylase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|G4MX54 MGG_08008 "Formyltetrahydrofolate deformylase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2482 CPS_2482 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4036 CPS_4036 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4357 CPS_4357 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3620 CPS_3620 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KQK6 VC_1992 "Formyltetrahydrofolate deformylase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1992 VC_1992 "formyltetrahydrofolate deformylase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0A5T6PURU_MYCTU3, ., 5, ., 1, ., 1, 00.37840.82760.8677yesno
P0A5T7PURU_MYCBO3, ., 5, ., 1, ., 1, 00.37840.82760.8677yesno
O34990PURU_BACSU3, ., 5, ., 1, ., 1, 00.39570.82460.8933yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.2LOW CONFIDENCE prediction!
3rd Layer3.5.1.100.824
3rd Layer3.5.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.III.1082.1
formyltetrahydrofolate deformylase (EC-2.1.2.2 3.5.1.10) (299 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gdcT1
precursor of carboxylase t-protein 1, glycine decarboxylase complex (EC-2.1.2.10); The glycine [...] (409 aa)
     •• 0.932
gdcT2
RecName- Full=Aminomethyltransferase; EC=2.1.2.10;; The glycine cleavage system catalyzes the d [...] (409 aa)
     •• 0.932
SHMT6
RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (472 aa)
     •• 0.913
SHMT1
RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (472 aa)
     •• 0.913
SHMT8
serine hydroxymethyltransferase 8 (EC-2.1.2.1); Interconversion of serine and glycine (By simil [...] (530 aa)
     •• 0.913
GART
hypothetical protein (215 aa)
  •  •••0.913
SHMT3
precursor of transferase serine hydroxymethyltransferase 3 (EC-2.1.2.1); Interconversion of ser [...] (516 aa)
     •• 0.912
SHMT2
precursor of transferase serine hydroxymethyltransferase 2 (EC-2.1.2.1); Interconversion of ser [...] (518 aa)
     •• 0.911
SHMT7
precursor of transferase serine hydroxymethyltransferase 7 (EC-2.1.2.1); Interconversion of ser [...] (521 aa)
     •• 0.911
FDH1
SubName- Full=Putative uncharacterized protein; (387 aa)
     •• 0.904

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
PLN02828268 PLN02828, PLN02828, formyltetrahydrofolate deformy 0.0
PRK06027286 PRK06027, purU, formyltetrahydrofolate deformylase 1e-111
cd08648196 cd08648, FMT_core_Formyl-FH4-Hydrolase_C, Formylte 1e-108
COG0788287 COG0788, PurU, Formyltetrahydrofolate hydrolase [N 1e-105
TIGR00655280 TIGR00655, PurU, formyltetrahydrofolate deformylas 4e-89
PRK13011286 PRK13011, PRK13011, formyltetrahydrofolate deformy 2e-80
PRK13010289 PRK13010, purU, formyltetrahydrofolate deformylase 1e-72
cd08645183 cd08645, FMT_core_GART, Phosphoribosylglycinamide 1e-43
COG0299200 COG0299, PurN, Folate-dependent phosphoribosylglyc 2e-39
PRK05647200 PRK05647, purN, phosphoribosylglycinamide formyltr 2e-36
pfam00551181 pfam00551, Formyl_trans_N, Formyl transferase 4e-36
cd08369173 cd08369, FMT_core, Formyltransferase, catalytic co 2e-34
TIGR00639190 TIGR00639, PurN, phosphoribosylglycinamide formylt 3e-31
cd0487574 cd04875, ACT_F4HF-DF, N-terminal ACT domain of for 2e-17
PLN02331207 PLN02331, PLN02331, phosphoribosylglycinamide form 1e-15
COG0223 307 COG0223, Fmt, Methionyl-tRNA formyltransferase [Tr 6e-14
cd08653152 cd08653, FMT_core_like_3, Formyl transferase catal 5e-12
PLN02285 334 PLN02285, PLN02285, methionyl-tRNA formyltransfera 5e-12
TIGR00460 313 TIGR00460, fmt, methionyl-tRNA formyltransferase 4e-11
cd08646204 cd08646, FMT_core_Met-tRNA-FMT_N, Methionyl-tRNA f 5e-10
PRK00005 309 PRK00005, fmt, methionyl-tRNA formyltransferase; R 8e-10
cd08644203 cd08644, FMT_core_ArnA_N, ArnA, N-terminal formylt 1e-09
cd08651180 cd08651, FMT_core_like_4, Formyl transferase catal 1e-08
PRK06988 312 PRK06988, PRK06988, putative formyltransferase; Pr 2e-07
PRK08125 660 PRK08125, PRK08125, bifunctional UDP-glucuronic ac 2e-06
cd08823177 cd08823, FMT_core_like_5, Formyl transferase catal 5e-06
PRK07579245 PRK07579, PRK07579, hypothetical protein; Provisio 6e-05
cd08820173 cd08820, FMT_core_like_6, Formyl transferase catal 1e-04
cd08649166 cd08649, FMT_core_NRPS_like, N-terminal formyl tra 2e-04
cd0211660 cd02116, ACT, ACT domains are commonly involved in 0.004
>gnl|CDD|178422 PLN02828, PLN02828, formyltetrahydrofolate deformylase Back     alignment and domain information 
 Score =  550 bits (1420), Expect = 0.0
 Identities = 222/268 (82%), Positives = 249/268 (92%), Gaps = 1/268 (0%)

Query: 59  LSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118
           LS+CIASRGGNIL  DVFVPE KNVFYSRSEFIFDP+KWPR QMDEDF ++SK F A++S
Sbjct: 1   LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIFDPVKWPRAQMDEDFQEISKHFKALKS 60

Query: 119 VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE 178
           VVRVP +DPKYK+AVLASKQ+HCL+D L+ WQ+G+LPV+ITCVISNH+RGPN+HV+RFLE
Sbjct: 61  VVRVPGLDPKYKIAVLASKQDHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLE 120

Query: 179 RHGIPYHYLC-AKENEREEELLELVQNTDFLVLARYMQILSGKFLRSYGKDVINIHHGLL 237
           RHGIPYHYL   KEN+RE+E+LELV+ TDFLVLARYMQILSG FL+ YGKD+INIHHGLL
Sbjct: 121 RHGIPYHYLPTTKENKREDEILELVKGTDFLVLARYMQILSGNFLKGYGKDIINIHHGLL 180

Query: 238 PSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDV 297
           PSFKGG P+KQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLR+FVQKSE++
Sbjct: 181 PSFKGGNPSKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRSFVQKSENL 240

Query: 298 EKQCLAKAIKSYCELRVLPYEMNKTVVF 325
           EKQCLAKAIKSYCELRVLPY  NKTVVF
Sbjct: 241 EKQCLAKAIKSYCELRVLPYGTNKTVVF 268

Length = 268
>gnl|CDD|235676 PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>gnl|CDD|187717 cd08648, FMT_core_Formyl-FH4-Hydrolase_C, Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain Back     alignment and domain information
>gnl|CDD|223859 COG0788, PurU, Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|233074 TIGR00655, PurU, formyltetrahydrofolate deformylase Back     alignment and domain information
>gnl|CDD|237266 PRK13011, PRK13011, formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>gnl|CDD|139334 PRK13010, purU, formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>gnl|CDD|187714 cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART) Back     alignment and domain information
>gnl|CDD|223376 COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|235544 PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|144222 pfam00551, Formyl_trans_N, Formyl transferase Back     alignment and domain information
>gnl|CDD|187712 cd08369, FMT_core, Formyltransferase, catalytic core domain Back     alignment and domain information
>gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent Back     alignment and domain information
>gnl|CDD|153147 cd04875, ACT_F4HF-DF, N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) Back     alignment and domain information
>gnl|CDD|177965 PLN02331, PLN02331, phosphoribosylglycinamide formyltransferase Back     alignment and domain information
>gnl|CDD|223301 COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|187721 cd08653, FMT_core_like_3, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|215159 PLN02285, PLN02285, methionyl-tRNA formyltransferase Back     alignment and domain information
>gnl|CDD|232983 TIGR00460, fmt, methionyl-tRNA formyltransferase Back     alignment and domain information
>gnl|CDD|187715 cd08646, FMT_core_Met-tRNA-FMT_N, Methionyl-tRNA formyltransferase, N-terminal hydrolase domain Back     alignment and domain information
>gnl|CDD|234567 PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|187713 cd08644, FMT_core_ArnA_N, ArnA, N-terminal formyltransferase domain Back     alignment and domain information
>gnl|CDD|187720 cd08651, FMT_core_like_4, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|235902 PRK06988, PRK06988, putative formyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|236156 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated Back     alignment and domain information
>gnl|CDD|187725 cd08823, FMT_core_like_5, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|236058 PRK07579, PRK07579, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|187722 cd08820, FMT_core_like_6, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|187718 cd08649, FMT_core_NRPS_like, N-terminal formyl transferase catalytic core domain of NRPS_like proteins, one of the proteins involved in the synthesis of Oxazolomycin Back     alignment and domain information
>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 325
TIGR00655280 PurU formyltetrahydrofolate deformylase. This mode 100.0
PRK13010289 purU formyltetrahydrofolate deformylase; Reviewed 100.0
PRK13011286 formyltetrahydrofolate deformylase; Reviewed 100.0
PRK06027286 purU formyltetrahydrofolate deformylase; Reviewed 100.0
PLN02828268 formyltetrahydrofolate deformylase 100.0
COG0788287 PurU Formyltetrahydrofolate hydrolase [Nucleotide 100.0
COG0299200 PurN Folate-dependent phosphoribosylglycinamide fo 100.0
PLN02331207 phosphoribosylglycinamide formyltransferase 100.0
TIGR00639190 PurN phosphoribosylglycinamide formyltransferase, 100.0
PRK05647200 purN phosphoribosylglycinamide formyltransferase; 100.0
KOG3076206 consensus 5'-phosphoribosylglycinamide formyltrans 100.0
PLN02285 334 methionyl-tRNA formyltransferase 100.0
COG0223 307 Fmt Methionyl-tRNA formyltransferase [Translation, 100.0
PF00551181 Formyl_trans_N: Formyl transferase; InterPro: IPR0 100.0
PRK06988 312 putative formyltransferase; Provisional 100.0
TIGR00460 313 fmt methionyl-tRNA formyltransferase. The top-scor 100.0
PRK00005 309 fmt methionyl-tRNA formyltransferase; Reviewed 100.0
PRK08125 660 bifunctional UDP-glucuronic acid decarboxylase/UDP 100.0
PRK07579245 hypothetical protein; Provisional 100.0
KOG3082 338 consensus Methionyl-tRNA formyltransferase [Transl 99.91
KOG2452 881 consensus Formyltetrahydrofolate dehydrogenase [Nu 99.87
cd0489377 ACT_GcvR_1 ACT domains that comprise the Glycine C 99.67
cd0487075 ACT_PSP_1 CT domains found N-terminal of phosphose 99.64
COG383090 ACT domain-containing protein [Signal transduction 99.63
cd0487574 ACT_F4HF-DF N-terminal ACT domain of formyltetrahy 99.62
PRK11589190 gcvR glycine cleavage system transcriptional repre 99.58
cd0487288 ACT_1ZPV ACT domain proteins similar to the yet un 99.58
PF1374076 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. 99.56
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 99.52
PRK0019490 hypothetical protein; Validated 99.51
PRK11589190 gcvR glycine cleavage system transcriptional repre 99.49
COG2716176 GcvR Glycine cleavage system regulatory protein [A 99.35
cd0487184 ACT_PSP_2 ACT domains found N-terminal of phosphos 98.98
COG2716176 GcvR Glycine cleavage system regulatory protein [A 98.66
PF0184266 ACT: ACT domain; InterPro: IPR002912 The ACT domai 98.63
CHL00100174 ilvH acetohydroxyacid synthase small subunit 98.45
PF1329180 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. 98.4
cd0492574 ACT_ACR_2 ACT domain-containing protein which is c 98.24
PRK08577136 hypothetical protein; Provisional 98.13
cd0488673 ACT_ThrD-II-like C-terminal ACT domain of biodegra 97.97
cd0488774 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te 97.95
cd0488876 ACT_PheB-BS C-terminal ACT domain of a small (~147 97.92
cd0487370 ACT_UUR-ACR-like ACT domains of the bacterial sign 97.9
PRK0673776 acetolactate synthase 1 regulatory subunit; Valida 97.87
cd0490969 ACT_PDH-BS C-terminal ACT domain of the monofuncti 97.86
cd0489970 ACT_ACR-UUR-like_2 C-terminal ACT domains of the b 97.85
cd0487872 ACT_AHAS N-terminal ACT domain of the Escherichia 97.81
cd0488179 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin 97.72
cd0492868 ACT_TyrKc Uncharacterized, N-terminal ACT domain o 97.72
cd0490273 ACT_3PGDH-xct C-terminal ACT (regulatory) domain o 97.72
PRK04435147 hypothetical protein; Provisional 97.72
cd0487671 ACT_RelA-SpoT ACT domain found C-terminal of the R 97.71
PRK1356284 acetolactate synthase 1 regulatory subunit; Provis 97.68
cd0487472 ACT_Af1403 N-terminal ACT domain of the yet unchar 97.66
PRK1115276 ilvM acetolactate synthase 2 regulatory subunit; P 97.64
cd0487971 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te 97.6
PRK0817896 acetolactate synthase 1 regulatory subunit; Review 97.53
cd0487774 ACT_TyrR N-terminal ACT domain of the TyrR protein 97.51
PRK03381774 PII uridylyl-transferase; Provisional 97.47
PRK11895161 ilvH acetolactate synthase 3 regulatory subunit; R 97.43
cd0492776 ACT_ACR-like_2 Second ACT domain, of a novel type 97.42
TIGR00119157 acolac_sm acetolactate synthase, small subunit. ac 97.4
cd0488372 ACT_AcuB C-terminal ACT domain of the Bacillus sub 97.36
cd0492672 ACT_ACR_4 C-terminal ACT domain, of a novel type o 97.34
cd0490073 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, 97.33
cd0488472 ACT_CBS C-terminal ACT domain of the cystathionine 97.3
cd0489775 ACT_ACR_3 ACT domain-containing protein which is c 97.28
PF1371063 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B. 97.25
cd0490371 ACT_LSD C-terminal ACT domain of the L-serine dehy 97.24
cd0490169 ACT_3PGDH C-terminal ACT (regulatory) domain of D- 97.22
cd0488956 ACT_PDH-BS-like C-terminal ACT domain of the monof 97.21
cd0490580 ACT_CM-PDT C-terminal ACT domain of the bifunction 97.18
cd0489572 ACT_ACR_1 ACT domain-containing protein which is c 97.17
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 97.1
cd0488075 ACT_AAAH-PDT-like ACT domain of the nonheme iron-d 97.09
cd0490866 ACT_Bt0572_1 N-terminal ACT domain of a novel prot 97.0
cd0489675 ACT_ACR-like_3 ACT domain-containing protein which 96.92
cd0488265 ACT_Bt0572_2 C-terminal ACT domain of a novel prot 96.89
TIGR00719208 sda_beta L-serine dehydratase, iron-sulfur-depende 96.78
cd0211660 ACT ACT domains are commonly involved in specifica 96.64
cd0488568 ACT_ThrD-I Tandem C-terminal ACT domains of threon 96.55
PRK10872743 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; 96.54
PRK07334403 threonine dehydratase; Provisional 96.52
PF1384065 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2 96.5
cd0493190 ACT_PAH ACT domain of the nonheme iron-dependent a 96.3
PRK11092702 bifunctional (p)ppGpp synthetase II/ guanosine-3', 96.23
TIGR00691683 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( 96.03
COG0317701 SpoT Guanosine polyphosphate pyrophosphohydrolases 95.87
PRK11790409 D-3-phosphoglycerate dehydrogenase; Provisional 95.87
COG4492150 PheB ACT domain-containing protein [General functi 95.85
PF00185158 OTCace: Aspartate/ornithine carbamoyltransferase, 95.77
PRK05092931 PII uridylyl-transferase; Provisional 95.71
COG0440163 IlvH Acetolactate synthase, small (regulatory) sub 95.54
COG1707218 ACT domain-containing protein [General function pr 95.53
cd0490474 ACT_AAAH ACT domain of the nonheme iron-dependent, 95.47
PRK05092931 PII uridylyl-transferase; Provisional 95.32
TIGR01127380 ilvA_1Cterm threonine dehydratase, medium form. A 95.27
PRK13581526 D-3-phosphoglycerate dehydrogenase; Provisional 95.25
TIGR01327525 PGDH D-3-phosphoglycerate dehydrogenase. This mode 95.22
cd0491375 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine- 95.2
PRK03381774 PII uridylyl-transferase; Provisional 95.19
PRK08818370 prephenate dehydrogenase; Provisional 94.69
cd0489469 ACT_ACR-like_1 ACT domain-containing protein which 94.64
PRK06545359 prephenate dehydrogenase; Validated 94.58
KOG2663309 consensus Acetolactate synthase, small subunit [Am 94.42
COG4747142 ACT domain-containing protein [General function pr 94.28
cd0492974 ACT_TPH ACT domain of the nonheme iron-dependent a 94.28
PRK11899279 prephenate dehydratase; Provisional 94.27
PRK06382406 threonine dehydratase; Provisional 94.17
PRK08198404 threonine dehydratase; Provisional 93.79
cd04930115 ACT_TH ACT domain of the nonheme iron-dependent ar 93.54
PRK03059856 PII uridylyl-transferase; Provisional 93.52
COG397886 Acetolactate synthase (isozyme II), small (regulat 93.38
PRK09436 819 thrA bifunctional aspartokinase I/homoserine dehyd 93.32
PRK05007884 PII uridylyl-transferase; Provisional 93.15
PLN02342348 ornithine carbamoyltransferase 92.9
PRK04284332 ornithine carbamoyltransferase; Provisional 92.65
PRK01759854 glnD PII uridylyl-transferase; Provisional 92.65
PRK05007884 PII uridylyl-transferase; Provisional 92.5
cd0489265 ACT_AK-like_2 ACT domains C-terminal to the cataly 92.47
PRK01759854 glnD PII uridylyl-transferase; Provisional 92.23
cd0493275 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal 92.19
PRK06349426 homoserine dehydrogenase; Provisional 92.12
PRK00779304 ornithine carbamoyltransferase; Provisional 91.76
COG2150167 Predicted regulator of amino acid metabolism, cont 91.63
PRK04374869 PII uridylyl-transferase; Provisional 91.61
cd0490685 ACT_ThrD-I_1 First of two tandem C-terminal ACT do 91.55
PRK00275895 glnD PII uridylyl-transferase; Provisional 91.32
COG0077279 PheA Prephenate dehydratase [Amino acid transport 91.18
cd0493764 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela 91.06
COG2844867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 91.0
PRK10622386 pheA bifunctional chorismate mutase/prephenate deh 90.8
PRK01713334 ornithine carbamoyltransferase; Provisional 90.8
PRK00275895 glnD PII uridylyl-transferase; Provisional 90.76
cd0492266 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona 90.72
PRK03059856 PII uridylyl-transferase; Provisional 90.67
PRK09466 810 metL bifunctional aspartate kinase II/homoserine d 90.61
PRK08526403 threonine dehydratase; Provisional 90.6
PRK04374869 PII uridylyl-transferase; Provisional 90.56
cd0491966 ACT_AK-Hom3_2 ACT domains located C-terminal to th 90.44
PRK02255338 putrescine carbamoyltransferase; Provisional 89.95
cd0492466 ACT_AK-Arch_2 ACT domains of a monofunctional aspa 89.65
PRK10820 520 DNA-binding transcriptional regulator TyrR; Provis 89.6
TIGR00658304 orni_carb_tr ornithine carbamoyltransferase. Most 89.55
TIGR00670301 asp_carb_tr aspartate carbamoyltransferase. Ornith 89.44
cd0491275 ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter 89.36
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 88.85
TIGR01761 343 thiaz-red thiazolinyl imide reductase. This reduct 88.75
TIGR02079409 THD1 threonine dehydratase. This model represents 88.58
PRK08639420 threonine dehydratase; Validated 88.23
COG2102223 Predicted ATPases of PP-loop superfamily [General 87.9
PRK11898283 prephenate dehydratase; Provisional 87.42
PLN02819 1042 lysine-ketoglutarate reductase/saccharopine dehydr 87.11
TIGR00290223 MJ0570_dom MJ0570-related uncharacterized domain. 86.96
cd0493575 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK 86.96
PRK13376 525 pyrB bifunctional aspartate carbamoyltransferase c 86.87
PRK08300 302 acetaldehyde dehydrogenase; Validated 86.72
COG3283 511 TyrR Transcriptional regulator of aromatic amino a 86.65
cd0491666 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal 86.54
cd0489161 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine- 86.01
PRK04523335 N-acetylornithine carbamoyltransferase; Reviewed 85.92
PF01902218 ATP_bind_4: ATP-binding region; InterPro: IPR00276 85.65
PLN02527306 aspartate carbamoyltransferase 85.55
PLN02317382 arogenate dehydratase 85.45
PRK03515336 ornithine carbamoyltransferase subunit I; Provisio 85.01
cd0491865 ACT_AK1-AT_2 ACT domains located C-terminal to the 85.01
cd0493378 ACT_AK1-AT_1 ACT domains located C-terminal to the 84.97
cd0491566 ACT_AK-Ectoine_2 ACT domains located C-terminal to 84.64
PF01408120 GFO_IDH_MocA: Oxidoreductase family, NAD-binding R 84.59
TIGR00289222 conserved hypothetical protein TIGR00289. Homologo 84.56
cd0486860 ACT_AK-like ACT domains C-terminal to the catalyti 84.48
PRK02102331 ornithine carbamoyltransferase; Validated 84.46
cd0493663 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine- 84.44
PRK14805302 ornithine carbamoyltransferase; Provisional 83.79
cd0492363 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine- 82.62
PRK08841392 aspartate kinase; Validated 82.18
COG2061170 ACT-domain-containing protein, predicted allosteri 81.92
TIGR01270 464 Trp_5_monoox tryptophan 5-monooxygenase, tetrameri 81.83
TIGR03316357 ygeW probable carbamoyltransferase YgeW. Members o 81.38
PRK12562334 ornithine carbamoyltransferase subunit F; Provisio 80.84
PRK0090792 hypothetical protein; Provisional 80.48
cd01994194 Alpha_ANH_like_IV This is a subfamily of Adenine n 80.19
>TIGR00655 PurU formyltetrahydrofolate deformylase Back     alignment and domain information 
Probab=100.00  E-value=3.7e-70  Score=511.06  Aligned_cols=274  Identities=45%  Similarity=0.770  Sum_probs=255.7

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHh-hhhhhcccceeee
Q 020508           43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK-LSKMFNAMRSVVR  121 (325)
Q Consensus        43 ~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~-l~~~l~~~~~~~~  121 (325)
                      +++|++|+|||||||+||++|+++|+||+|++|+.+..+|.|+|++++++|+...+.++|+++|++ +++++|++   |+
T Consensus         1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~~~~l~---i~   77 (280)
T TIGR00655         1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEKFEMT---WE   77 (280)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhCCE---EE
Confidence            479999999999999999999999999999999988778999999999999744789999999999 99999998   78


Q ss_pred             ecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecCCC-C--hhHHHH
Q 020508          122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N--EREEEL  198 (325)
Q Consensus       122 ~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~~~-~--~~~~~~  198 (325)
                      +...++++||+||+||+||||++|++++++|+++++|++|+||+++     +..+|+++|||+++++.+. +  ..++++
T Consensus        78 l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~~-----~~~~A~~~gIp~~~~~~~~~~~~~~e~~~  152 (280)
T TIGR00655        78 LILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHED-----LRSLVERFGIPFHYIPATKDNRVEHEKRQ  152 (280)
T ss_pred             EecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcChh-----HHHHHHHhCCCEEEcCCCCcchhhhHHHH
Confidence            8888889999999999999999999999999999999999999863     4568999999999877321 1  234578


Q ss_pred             HHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEE
Q 020508          199 LELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQ  276 (325)
Q Consensus       199 ~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q  276 (325)
                      .++|+  ++|++|++|||+||++++++.|++++||+||||||+|||++|++||+.+|++++|+|+|+|++++|+||||.|
T Consensus       153 ~~~l~~~~~Dlivlagym~il~~~~l~~~~~~iINiHpSLLP~f~G~~p~~~ai~~G~k~tG~TvH~V~e~lD~GpII~Q  232 (280)
T TIGR00655       153 LELLKQYQVDLVVLAKYMQILSPDFVKRYPNKIINIHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTEELDEGPIIEQ  232 (280)
T ss_pred             HHHHHHhCCCEEEEeCchhhCCHHHHhhccCCEEEecCCcCCCCCCcCHHHHHHHcCCCeEEEEEEEEcCCCcCCCeEEE
Confidence            88886  8999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCceeeC
Q 020508          277 MVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF  325 (325)
Q Consensus       277 ~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~~~  325 (325)
                      +.++|.++||.++|.+|+++.|+++++++++.++++++...+ +|||||
T Consensus       233 ~~v~I~~~dt~~~L~~ri~~~E~~~~~~ai~~~~~~~~~~~~-~~~~vf  280 (280)
T TIGR00655       233 DVVRVDHTDNVEDLIRAGRDIEKVVLARAVKLHLEDRVFVYE-NKTVVF  280 (280)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeEEcC-CeeEEC
Confidence            999999999999999999999999999999999999999885 999998

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PRK13011 formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PLN02828 formyltetrahydrofolate deformylase Back     alignment and domain information
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] Back     alignment and domain information
>PLN02331 phosphoribosylglycinamide formyltransferase Back     alignment and domain information
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent Back     alignment and domain information
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed Back     alignment and domain information
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02285 methionyl-tRNA formyltransferase Back     alignment and domain information
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group Back     alignment and domain information
>PRK06988 putative formyltransferase; Provisional Back     alignment and domain information
>TIGR00460 fmt methionyl-tRNA formyltransferase Back     alignment and domain information
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed Back     alignment and domain information
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated Back     alignment and domain information
>PRK07579 hypothetical protein; Provisional Back     alignment and domain information
>KOG3082 consensus Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>COG3830 ACT domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) Back     alignment and domain information
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional Back     alignment and domain information
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein Back     alignment and domain information
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PRK00194 hypothetical protein; Validated Back     alignment and domain information
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional Back     alignment and domain information
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism] Back     alignment and domain information
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism] Back     alignment and domain information
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold Back     alignment and domain information
>CHL00100 ilvH acetohydroxyacid synthase small subunit Back     alignment and domain information
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A Back     alignment and domain information
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>PRK08577 hypothetical protein; Provisional Back     alignment and domain information
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains Back     alignment and domain information
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains Back     alignment and domain information
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a Back     alignment and domain information
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD Back     alignment and domain information
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated Back     alignment and domain information
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) Back     alignment and domain information
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) Back     alignment and domain information
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains Back     alignment and domain information
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains Back     alignment and domain information
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>PRK04435 hypothetical protein; Provisional Back     alignment and domain information
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains Back     alignment and domain information
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional Back     alignment and domain information
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a Back     alignment and domain information
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional Back     alignment and domain information
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed Back     alignment and domain information
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed Back     alignment and domain information
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>TIGR00119 acolac_sm acetolactate synthase, small subunit Back     alignment and domain information
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB Back     alignment and domain information
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria Back     alignment and domain information
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B Back     alignment and domain information
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit Back     alignment and domain information
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria Back     alignment and domain information
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate Back     alignment and domain information
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme Back     alignment and domain information
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains Back     alignment and domain information
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains Back     alignment and domain information
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit Back     alignment and domain information
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) Back     alignment and domain information
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D Back     alignment and domain information
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH) Back     alignment and domain information
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional Back     alignment and domain information
>COG4492 PheB ACT domain-containing protein [General function prediction only] Back     alignment and domain information
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism] Back     alignment and domain information
>COG1707 ACT domain-containing protein [General function prediction only] Back     alignment and domain information
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form Back     alignment and domain information
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional Back     alignment and domain information
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase Back     alignment and domain information
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK08818 prephenate dehydrogenase; Provisional Back     alignment and domain information
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>PRK06545 prephenate dehydrogenase; Validated Back     alignment and domain information
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism] Back     alignment and domain information
>COG4747 ACT domain-containing protein [General function prediction only] Back     alignment and domain information
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes Back     alignment and domain information
>PRK11899 prephenate dehydratase; Provisional Back     alignment and domain information
>PRK06382 threonine dehydratase; Provisional Back     alignment and domain information
>PRK08198 threonine dehydratase; Provisional Back     alignment and domain information
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH) Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown] Back     alignment and domain information
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PLN02342 ornithine carbamoyltransferase Back     alignment and domain information
>PRK04284 ornithine carbamoyltransferase; Provisional Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII Back     alignment and domain information
>PRK06349 homoserine dehydrogenase; Provisional Back     alignment and domain information
>PRK00779 ornithine carbamoyltransferase; Provisional Back     alignment and domain information
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only] Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional Back     alignment and domain information
>PRK01713 ornithine carbamoyltransferase; Provisional Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH) Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional Back     alignment and domain information
>PRK08526 threonine dehydratase; Provisional Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3 Back     alignment and domain information
>PRK02255 putrescine carbamoyltransferase; Provisional Back     alignment and domain information
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2) Back     alignment and domain information
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional Back     alignment and domain information
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase Back     alignment and domain information
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase Back     alignment and domain information
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>TIGR01761 thiaz-red thiazolinyl imide reductase Back     alignment and domain information
>TIGR02079 THD1 threonine dehydratase Back     alignment and domain information
>PRK08639 threonine dehydratase; Validated Back     alignment and domain information
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] Back     alignment and domain information
>PRK11898 prephenate dehydratase; Provisional Back     alignment and domain information
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase Back     alignment and domain information
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain Back     alignment and domain information
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein Back     alignment and domain information
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK08300 acetaldehyde dehydrogenase; Validated Back     alignment and domain information
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] Back     alignment and domain information
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII Back     alignment and domain information
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins Back     alignment and domain information
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed Back     alignment and domain information
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal Back     alignment and domain information
>PLN02527 aspartate carbamoyltransferase Back     alignment and domain information
>PLN02317 arogenate dehydratase Back     alignment and domain information
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional Back     alignment and domain information
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1) Back     alignment and domain information
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1) Back     alignment and domain information
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway Back     alignment and domain information
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot Back     alignment and domain information
>TIGR00289 conserved hypothetical protein TIGR00289 Back     alignment and domain information
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) Back     alignment and domain information
>PRK02102 ornithine carbamoyltransferase; Validated Back     alignment and domain information
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains Back     alignment and domain information
>PRK14805 ornithine carbamoyltransferase; Provisional Back     alignment and domain information
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains Back     alignment and domain information
>PRK08841 aspartate kinase; Validated Back     alignment and domain information
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric Back     alignment and domain information
>TIGR03316 ygeW probable carbamoyltransferase YgeW Back     alignment and domain information
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional Back     alignment and domain information
>PRK00907 hypothetical protein; Provisional Back     alignment and domain information
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
3o1l_A302 Crystal Structure Of A Formyltetrahydrofolate Defor 3e-51
3obi_A288 Crystal Structure Of A Formyltetrahydrofolate Defor 3e-43
3nrb_A287 Crystal Structure Of A Formyltetrahydrofolate Defor 2e-40
3lou_A292 Crystal Structure Of Formyltetrahydrofolate Deformy 2e-36
3n0v_A286 Crystal Structure Of A Formyltetrahydrofolate Defor 2e-33
3kcq_A215 Crystal Structure Of Phosphoribosylglycinamide Form 1e-18
3p9x_A211 Crystal Structure Of Phosphoribosylglycinamide Form 2e-18
3auf_A229 Crystal Structure Of Glycinamide Ribonucleotide Tra 5e-17
2ywr_A216 Crystal Structure Of Gar Transformylase From Aquife 1e-16
1zly_A203 The Structure Of Human Glycinamide Ribonucleotide T 2e-16
1meo_A209 Human Glycinamide Ribonucleotide Transformylase At 2e-16
1mej_B223 Human Glycinamide Ribonucleotide Transformylase Dom 4e-16
1zlx_A203 The Apo Structure Of Human Glycinamide Ribonucleoti 2e-15
4ds3_A209 Crystal Structure Of Phosphoribosylglycinamide Form 1e-14
3av3_A212 Crystal Structure Of Glycinamide Ribonucleotide Tra 7e-13
3tqr_A215 Structure Of The Phosphoribosylglycinamide Formyltr 6e-11
1c3e_A209 New Insights Into Inhibitor Design From The Crystal 7e-11
1grc_A212 Crystal Structure Of Glycinamide Ribonucleotide Tra 7e-11
1cdd_A212 Structures Of Apo And Complexed Escherichia Coli Gl 7e-11
2gar_A212 A Ph-dependent Stablization Of An Active Site Loop 7e-11
4iqf_A 317 Crystal Structure Of Methyionyl-trna Formyltransfer 2e-09
3da8_A215 Crystal Structure Of Purn From Mycobacterium Tuberc 3e-09
1fmt_A 314 Methionyl-Trnafmet Formyltransferase From Escherich 6e-05
3tqq_A 314 Structure Of The Methionyl-Trna Formyltransferase ( 2e-04
3r8x_A 318 Crystal Structure Of Methionyl-Trna Formyltransfera 2e-04
>pdb|3O1L|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str. Dc3000 At 2.20 A Resolution Length = 302 Back     alignment and structure 
Iteration: 1

 Score =  198 bits (504), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 120/285 (42%), Positives = 157/285 (55%), Gaps = 14/285 (4%)
Query: 46  VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDED 105
           V  CPD VGIVAK+S  +AS  G I  A          F+ R E   D + +  +   E 
Sbjct: 26  VIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFXRHEIRADTLPFDLDGFREA 85
Query: 106 FFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
           F  +++ F+      R+ D   K +V + AS++ HCL D L+ W   +L  +I CVISNH
Sbjct: 86  FTPIAEEFSXD---WRITDSAQKKRVVLXASRESHCLADLLHRWHSDELDCDIACVISNH 142
Query: 166 DRGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQILSGK 220
                  +   +E H IPY+++               +       D +VLARY QIL  +
Sbjct: 143 -----QDLRSXVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYXQILPPQ 197
Query: 221 FLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVER 280
             R Y   VINIHH  LPSF G KP  QA   GVKLIGAT H+VTEELDAGPIIEQ V R
Sbjct: 198 LCREYAHQVINIHHSFLPSFVGAKPYHQASLRGVKLIGATCHYVTEELDAGPIIEQDVVR 257
Query: 281 VSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 325
           VSHRD++   V+   DVEK  LA+ ++++ E RVL ++ NKTVVF
Sbjct: 258 VSHRDSIENXVRFGRDVEKXVLARGLRAHLEDRVLVHD-NKTVVF 301
>pdb|3OBI|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Np_949368) From Rhodopseudomonas Palustris Cga009 At 1.95 A Resolution Length = 288 Back     alignment and structure
>pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A Resolution Length = 287 Back     alignment and structure
>pdb|3LOU|A Chain A, Crystal Structure Of Formyltetrahydrofolate Deformylase (yp_105254.1) From Burkholderia Mallei Atcc 23344 At 1.90 A Resolution Length = 292 Back     alignment and structure
>pdb|3N0V|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A Resolution Length = 286 Back     alignment and structure
>pdb|3KCQ|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Anaplasma Phagocytophilum Length = 215 Back     alignment and structure
>pdb|3P9X|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Bacillus Halodurans Length = 211 Back     alignment and structure
>pdb|3AUF|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Transformylase 1 From Symbiobacterium Toebii Length = 229 Back     alignment and structure
>pdb|2YWR|A Chain A, Crystal Structure Of Gar Transformylase From Aquifex Aeolicus Length = 216 Back     alignment and structure
>pdb|1ZLY|A Chain A, The Structure Of Human Glycinamide Ribonucleotide Transformylase In Complex With Alpha,beta-n- (hydroxyacetyl)-d-ribofuranosylamine And 10-formyl-5,8, Dideazafolate Length = 203 Back     alignment and structure
>pdb|1MEO|A Chain A, Human Glycinamide Ribonucleotide Transformylase At Ph 4.2 Length = 209 Back     alignment and structure
>pdb|1MEJ|B Chain B, Human Glycinamide Ribonucleotide Transformylase Domain At Ph 8.5 Length = 223 Back     alignment and structure
>pdb|1ZLX|A Chain A, The Apo Structure Of Human Glycinamide Ribonucleotide Transformylase Length = 203 Back     alignment and structure
>pdb|4DS3|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Brucella Melitensis Length = 209 Back     alignment and structure
>pdb|3AV3|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Transformylase 1 From Geobacillus Kaustophilus Length = 212 Back     alignment and structure
>pdb|3TQR|A Chain A, Structure Of The Phosphoribosylglycinamide Formyltransferase (Purn) In Complex With Ches From Coxiella Burnetii Length = 215 Back     alignment and structure
>pdb|1C3E|A Chain A, New Insights Into Inhibitor Design From The Crystal Structure And Nmr Studies Of E. Coli Gar Transformylate In Complex With Beta-Gar And 10-Formyl-5,8,10-Trideazafolic Acid. Length = 209 Back     alignment and structure
>pdb|1GRC|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Transformylase From Escherichia Coli At 3.0 Angstroms Resolution: A Target Enzyme For Chemotherapy Length = 212 Back     alignment and structure
>pdb|1CDD|A Chain A, Structures Of Apo And Complexed Escherichia Coli Glycinamide Ribonucleotide Transformylase Length = 212 Back     alignment and structure
>pdb|2GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop Observed From Low And High Ph Crystal Structures Of Mutant Monomeric Glycinamide Ribonucleotide Transformylase Length = 212 Back     alignment and structure
>pdb|4IQF|A Chain A, Crystal Structure Of Methyionyl-trna Formyltransferase From Bacillus Anthracis Length = 317 Back     alignment and structure
>pdb|3DA8|A Chain A, Crystal Structure Of Purn From Mycobacterium Tuberculosis Length = 215 Back     alignment and structure
>pdb|1FMT|A Chain A, Methionyl-Trnafmet Formyltransferase From Escherichia Coli Length = 314 Back     alignment and structure
>pdb|3TQQ|A Chain A, Structure Of The Methionyl-Trna Formyltransferase (Fmt) From Coxiella Burnetii Length = 314 Back     alignment and structure
>pdb|3R8X|A Chain A, Crystal Structure Of Methionyl-Trna Formyltransferase From Yersinia Pestis Complexed With L-Methionine Length = 318 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
3o1l_A302 Formyltetrahydrofolate deformylase; structural gen 1e-134
3obi_A288 Formyltetrahydrofolate deformylase; structural gen 1e-133
3lou_A292 Formyltetrahydrofolate deformylase; structural gen 1e-133
3n0v_A286 Formyltetrahydrofolate deformylase; formyl transfe 1e-133
3nrb_A287 Formyltetrahydrofolate deformylase; N-terminal ACT 1e-128
3kcq_A215 Phosphoribosylglycinamide formyltransferase; struc 2e-43
3p9x_A211 Phosphoribosylglycinamide formyltransferase; struc 3e-42
3auf_A229 Glycinamide ribonucleotide transformylase 1; struc 3e-42
3av3_A212 Phosphoribosylglycinamide formyltransferase; struc 4e-42
1jkx_A212 GART;, phosphoribosylglycinamide formyltransferase 5e-42
4ds3_A209 Phosphoribosylglycinamide formyltransferase; struc 5e-42
2ywr_A216 Phosphoribosylglycinamide formyltransferase; rossm 6e-42
3tqr_A215 Phosphoribosylglycinamide formyltransferase; purin 8e-42
1meo_A209 Phosophoribosylglycinamide formyltransferase; puri 1e-41
3da8_A215 Probable 5'-phosphoribosylglycinamide formyltransf 2e-41
1zgh_A260 Methionyl-tRNA formyltransferase; southeast collab 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1z7e_A 660 Protein aRNA; rossmann fold, OB-like fold, hydrola 1e-09
2bln_A 305 Protein YFBG; transferase, formyltransferase, L-AR 1e-09
3rfo_A 317 Methionyl-tRNA formyltransferase; structural genom 6e-08
1fmt_A 314 Methionyl-tRNA FMet formyltransferase; initiator t 4e-07
2bw0_A 329 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase 4e-07
3tqq_A 314 Methionyl-tRNA formyltransferase; protein synthesi 6e-07
3q0i_A 318 Methionyl-tRNA formyltransferase; structural genom 1e-06
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Length = 302 Back     alignment and structure
 Score =  382 bits (984), Expect = e-134
 Identities = 125/301 (41%), Positives = 167/301 (55%), Gaps = 14/301 (4%)

Query: 30  EPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSE 89
              E+     +     V  CPD VGIVAK+S  +AS  G I  A          F+ R E
Sbjct: 10  HHHENLYFQGMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHE 69

Query: 90  FIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGW 149
              D + +  +   E F  +++ F+      R+ D   K +V ++AS++ HCL D L+ W
Sbjct: 70  IRADTLPFDLDGFREAFTPIAEEFSM---DWRITDSAQKKRVVLMASRESHCLADLLHRW 126

Query: 150 QEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--N 204
              +L  +I CVISNH       +   +E H IPY+++    ++      E+  LV    
Sbjct: 127 HSDELDCDIACVISNHQ-----DLRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQ 181

Query: 205 TDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFV 264
            D +VLARYMQIL  +  R Y   VINIHH  LPSF G KP  QA   GVKLIGAT H+V
Sbjct: 182 ADVVVLARYMQILPPQLCREYAHQVINIHHSFLPSFVGAKPYHQASLRGVKLIGATCHYV 241

Query: 265 TEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVV 324
           TEELDAGPIIEQ V RVSHRD++   V+   DVEK  LA+ ++++ E RVL ++ NKTVV
Sbjct: 242 TEELDAGPIIEQDVVRVSHRDSIENMVRFGRDVEKMVLARGLRAHLEDRVLVHD-NKTVV 300

Query: 325 F 325
           F
Sbjct: 301 F 301
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Length = 288 Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Length = 292 Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Length = 286 Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Length = 287 Back     alignment and structure
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} Length = 215 Back     alignment and structure
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans} Length = 211 Back     alignment and structure
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} Length = 229 Back     alignment and structure
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} Length = 212 Back     alignment and structure
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Length = 212 Back     alignment and structure
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} Length = 209 Back     alignment and structure
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Length = 216 Back     alignment and structure
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} Length = 215 Back     alignment and structure
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Length = 209 Back     alignment and structure
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Length = 215 Back     alignment and structure
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1 Length = 260 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 Back     alignment and structure
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A Length = 305 Back     alignment and structure
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A Length = 314 Back     alignment and structure
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A Length = 329 Back     alignment and structure
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii} Length = 314 Back     alignment and structure
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae} Length = 318 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
3n0v_A286 Formyltetrahydrofolate deformylase; formyl transfe 100.0
3o1l_A302 Formyltetrahydrofolate deformylase; structural gen 100.0
3lou_A292 Formyltetrahydrofolate deformylase; structural gen 100.0
3obi_A288 Formyltetrahydrofolate deformylase; structural gen 100.0
3nrb_A287 Formyltetrahydrofolate deformylase; N-terminal ACT 100.0
3kcq_A215 Phosphoribosylglycinamide formyltransferase; struc 100.0
3tqr_A215 Phosphoribosylglycinamide formyltransferase; purin 100.0
1jkx_A212 GART;, phosphoribosylglycinamide formyltransferase 100.0
4ds3_A209 Phosphoribosylglycinamide formyltransferase; struc 100.0
1meo_A209 Phosophoribosylglycinamide formyltransferase; puri 100.0
3da8_A215 Probable 5'-phosphoribosylglycinamide formyltransf 100.0
3p9x_A211 Phosphoribosylglycinamide formyltransferase; struc 100.0
3auf_A229 Glycinamide ribonucleotide transformylase 1; struc 100.0
2ywr_A216 Phosphoribosylglycinamide formyltransferase; rossm 100.0
3av3_A212 Phosphoribosylglycinamide formyltransferase; struc 100.0
1fmt_A 314 Methionyl-tRNA FMet formyltransferase; initiator t 100.0
2bln_A 305 Protein YFBG; transferase, formyltransferase, L-AR 100.0
3rfo_A 317 Methionyl-tRNA formyltransferase; structural genom 100.0
3q0i_A 318 Methionyl-tRNA formyltransferase; structural genom 100.0
3tqq_A 314 Methionyl-tRNA formyltransferase; protein synthesi 100.0
2bw0_A 329 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase 100.0
1z7e_A 660 Protein aRNA; rossmann fold, OB-like fold, hydrola 100.0
1zgh_A260 Methionyl-tRNA formyltransferase; southeast collab 99.97
3p96_A 415 Phosphoserine phosphatase SERB; ssgcid, structural 99.57
1zpv_A91 ACT domain protein; structural genomics, PSI, prot 99.48
2nyi_A195 Unknown protein; protein structure initiative, PSI 99.45
1u8s_A192 Glycine cleavage system transcriptional repressor, 99.36
1u8s_A192 Glycine cleavage system transcriptional repressor, 99.36
2nyi_A195 Unknown protein; protein structure initiative, PSI 99.31
2ko1_A88 CTR148A, GTP pyrophosphokinase; homodimer, alpha+b 98.46
3p96_A415 Phosphoserine phosphatase SERB; ssgcid, structural 98.26
2f1f_A164 Acetolactate synthase isozyme III small subunit; f 97.68
1y7p_A223 Hypothetical protein AF1403; structural genomics, 97.52
2pc6_A165 Probable acetolactate synthase isozyme III (small; 97.47
2fgc_A193 Acetolactate synthase, small subunit; regulatory s 97.37
2re1_A167 Aspartokinase, alpha and beta subunits; structural 97.27
2dt9_A167 Aspartokinase; protein-ligand complex, regulatory 96.99
2f06_A144 Conserved hypothetical protein; structural genomic 96.96
2jhe_A190 Transcription regulator TYRR; aromatic hydrocarbon 96.75
1ygy_A529 PGDH, D-3-phosphoglycerate dehydrogenase; oxidored 96.47
4go7_X200 Aspartokinase; transferase; 2.00A {Mycobacterium t 96.09
1sc6_A404 PGDH, D-3-phosphoglycerate dehydrogenase; alloster 95.82
2f06_A144 Conserved hypothetical protein; structural genomic 95.79
2dtj_A178 Aspartokinase; protein-ligand complex, regulatory 95.57
4gmf_A 372 Yersiniabactin biosynthetic protein YBTU; rossmann 95.34
2i6u_A307 Otcase, ornithine carbamoyltransferase; X-RAY crys 94.4
3s1t_A181 Aspartokinase; ACT domain, threonine binding, regu 94.39
1pvv_A315 Otcase, ornithine carbamoyltransferase; dodecamer; 93.87
2re1_A167 Aspartokinase, alpha and beta subunits; structural 93.8
1vlv_A325 Otcase, ornithine carbamoyltransferase; TM1097, st 93.44
3gd5_A323 Otcase, ornithine carbamoyltransferase; structural 93.36
4ep1_A340 Otcase, ornithine carbamoyltransferase; structural 93.35
2dtj_A178 Aspartokinase; protein-ligand complex, regulatory 92.78
3mtj_A444 Homoserine dehydrogenase; rossmann-fold, PSI, MCSG 92.61
3k5p_A416 D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, 92.07
2qmx_A283 Prephenate dehydratase; APC86053, L-Phe inhibition 91.64
2dt9_A167 Aspartokinase; protein-ligand complex, regulatory 91.63
3mwb_A313 Prephenate dehydratase; L-Phe, PSI, MCSG, structur 91.2
3tpf_A307 Otcase, ornithine carbamoyltransferase; structural 91.05
3ab4_A421 Aspartokinase; aspartate kinase, concerted inhibit 90.78
2qmw_A267 PDT, prephenate dehydratase; APC85812, prephenate 90.11
3luy_A329 Probable chorismate mutase; structural genomics, A 90.02
3l76_A600 Aspartokinase; allostery, ACT domains, kinase tran 89.96
3grf_A328 Ornithine carbamoyltransferase; ornithine transcar 89.37
1dxh_A335 Ornithine carbamoyltransferase; transcarbamylase; 88.87
1duv_G333 Octase-1, ornithine transcarbamoylase; enzyme-inhi 88.67
3s1t_A181 Aspartokinase; ACT domain, threonine binding, regu 87.88
4go7_X200 Aspartokinase; transferase; 2.00A {Mycobacterium t 87.68
2w37_A359 Ornithine carbamoyltransferase, catabolic; transca 87.1
4a8t_A339 Putrescine carbamoyltransferase; trabnsferase PALO 86.74
3rjz_A237 N-type ATP pyrophosphatase superfamily; structural 86.68
1ml4_A308 Aspartate transcarbamoylase; beta pleated sheet, p 86.65
4ekn_B306 Aspartate carbamoyltransferase; atcase, aspartate 86.41
4had_A 350 Probable oxidoreductase protein; structural genomi 86.1
4amu_A365 Ornithine carbamoyltransferase, catabolic; ornithi 85.57
2ef0_A301 Ornithine carbamoyltransferase; TTHA1199, thermus 85.42
3a06_A 376 1-deoxy-D-xylulose 5-phosphate reductoisomerase; M 85.18
4a8p_A355 Putrescine carbamoyltransferase; ornithine agmatin 84.85
4gqa_A 412 NAD binding oxidoreductase; structural genomics, P 84.45
1zq6_A359 Otcase, ornithine carbamoyltransferase; alpha/beta 84.09
1zhv_A134 Hypothetical protein ATU0741; NESG, ATR8, structur 83.96
4f2g_A309 Otcase 1, ornithine carbamoyltransferase 1; struct 83.8
4fb5_A 393 Probable oxidoreductase protein; PSI-biology, nysg 82.61
3csu_A310 Protein (aspartate carbamoyltransferase); transfer 82.04
3fwz_A140 Inner membrane protein YBAL; TRKA-N domain, E.coli 80.56
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Back     alignment and structure
Probab=100.00  E-value=1.4e-71  Score=521.58  Aligned_cols=278  Identities=32%  Similarity=0.543  Sum_probs=258.5

Q ss_pred             CCcceEEEEEEcCCCcchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHhhhhhhcccc
Q 020508           38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR  117 (325)
Q Consensus        38 ~~~~~~~ltv~g~DrpGIVa~Vt~~La~~giNI~~l~~~~~~~~g~F~~~~~v~~p~~~~~~~~L~~~l~~l~~~l~~~~  117 (325)
                      .+..++++|++|+||||||++||++|+++|+||++++|+.+..+|.|+|+++++.|+ ..+.++|+++|+++|++++++ 
T Consensus         4 ~~~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-~~~~~~L~~~f~~la~~l~m~-   81 (286)
T 3n0v_A            4 RAPDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD-DFDEAGFRAGLAERSEAFGMA-   81 (286)
T ss_dssp             ---CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS-SCCHHHHHHHHHHHHGGGTCE-
T ss_pred             ccCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC-CCCHHHHHHHHHHHHHHcCCE-
Confidence            345689999999999999999999999999999999999878899999999999998 788999999999999999998 


Q ss_pred             eeeeecCCCCCceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEecC-CCCh--h
Q 020508          118 SVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KENE--R  194 (325)
Q Consensus       118 ~~~~~~~~~~~~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~~-~~~~--~  194 (325)
                        |++.+.++|+||+||+||+||||++|++++++|+++++|++|+||+++     +.++|+++|||+++++. ..+.  .
T Consensus        82 --~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~-----~~~~A~~~gIp~~~~~~~~~~r~~~  154 (286)
T 3n0v_A           82 --FELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVVSNHPD-----LEPLAHWHKIPYYHFALDPKDKPGQ  154 (286)
T ss_dssp             --EEEECTTCCCEEEEEESSCCHHHHHHHHHHHTTSSCCEEEEEEESSST-----THHHHHHTTCCEEECCCBTTBHHHH
T ss_pred             --EEeecCCCCcEEEEEEeCCCCCHHHHHHHHHCCCCCcEEEEEEeCcHH-----HHHHHHHcCCCEEEeCCCcCCHHHH
Confidence              778877889999999999999999999999999999999999999864     46789999999998873 2222  2


Q ss_pred             HHHHHHHhc--CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCC
Q 020508          195 EEELLELVQ--NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGP  272 (325)
Q Consensus       195 ~~~~~~~l~--~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~  272 (325)
                      ++++.+.|+  ++|++|++|||+|||+++++.|++++||+||||||+|||++|++||+.+|++.+|+|+|+|++++|+||
T Consensus       155 ~~~~~~~l~~~~~Dlivla~y~~il~~~~l~~~~~~~iNiHpSlLP~~rG~~p~~~Ai~~G~~~~G~Tvh~v~~~lD~Gp  234 (286)
T 3n0v_A          155 ERKVLQVIEETGAELVILARYMQVLSPELCRRLDGWAINIHHSLLPGFKGAKPYHQAYNKGVKMVGATAHYINNDLDEGP  234 (286)
T ss_dssp             HHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHTTTSEEEEEECSSTTCCCSCHHHHHHHHTCSEEEEEEEECCSSTTCSC
T ss_pred             HHHHHHHHHhcCCCEEEecccccccCHHHHhhhcCCeEEeccccccCCCCccHHHHHHHcCCCeEEEEEEEEcCCCCCCc
Confidence            457888887  899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCceeeC
Q 020508          273 IIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF  325 (325)
Q Consensus       273 Ii~Q~~~~I~~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~~~  325 (325)
                      ||.|+.++|.++||.++|.+|+.++++++++++++++++|++...+ +|||||
T Consensus       235 Ii~Q~~~~i~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~~~~~~-~~~~vf  286 (286)
T 3n0v_A          235 IIAQGVEVVDHSHYPEDLIAKGRDIECLTLARAVGYHIERRVFLNA-NRTVVL  286 (286)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEEC
T ss_pred             eeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEcC-CEEEEC
Confidence            9999999999999999999999999999999999999999999885 999998
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Back     alignment and structure
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0 Back     alignment and structure
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0 Back     alignment and structure
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Back     alignment and structure
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} Back     alignment and structure
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Back     alignment and structure
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Back     alignment and structure
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans} Back     alignment and structure
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} Back     alignment and structure
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Back     alignment and structure
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} Back     alignment and structure
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A Back     alignment and structure
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A Back     alignment and structure
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae} Back     alignment and structure
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii} Back     alignment and structure
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A Back     alignment and structure
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Back     alignment and structure
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1 Back     alignment and structure
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} Back     alignment and structure
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Back     alignment and structure
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} Back     alignment and structure
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12 Back     alignment and structure
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58} Back     alignment and structure
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A Back     alignment and structure
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 Back     alignment and structure
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} Back     alignment and structure
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Back     alignment and structure
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X Back     alignment and structure
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Back     alignment and structure
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 Back     alignment and structure
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B* Back     alignment and structure
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* Back     alignment and structure
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A Back     alignment and structure
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis} Back     alignment and structure
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A Back     alignment and structure
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58} Back     alignment and structure
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 Back     alignment and structure
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus} Back     alignment and structure
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis} Back     alignment and structure
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B* Back     alignment and structure
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} Back     alignment and structure
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Back     alignment and structure
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls} Back     alignment and structure
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A Back     alignment and structure
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens} Back     alignment and structure
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} Back     alignment and structure
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Back     alignment and structure
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3 Back     alignment and structure
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis} Back     alignment and structure
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Back     alignment and structure
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} Back     alignment and structure
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A Back     alignment and structure
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* Back     alignment and structure
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis} Back     alignment and structure
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X Back     alignment and structure
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} Back     alignment and structure
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis} Back     alignment and structure
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A Back     alignment and structure
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 Back     alignment and structure
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A Back     alignment and structure
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} Back     alignment and structure
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A Back     alignment and structure
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Back     alignment and structure
>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A* Back     alignment and structure
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A Back     alignment and structure
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} Back     alignment and structure
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8 Back     alignment and structure
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} Back     alignment and structure
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} Back     alignment and structure
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... Back     alignment and structure
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 325
d1meoa_205 c.65.1.1 (A:) Glycinamide ribonucleotide transform 5e-27
d1jkxa_209 c.65.1.1 (A:) Glycinamide ribonucleotide transform 2e-25
d1zgha2164 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransf 9e-12
d1u8sa293 d.58.18.5 (A:88-180) putative transcriptional repr 6e-06
d1u8sa186 d.58.18.5 (A:2-87) putative transcriptional repres 1e-05
d1zpva183 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Strepto 1e-04
>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]} Length = 205 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 5e-27
 Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 4/199 (2%)

Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189
           +VAVL S     L   +   +E     +I  VISN                    ++   
Sbjct: 2   RVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLY 61

Query: 190 KENEREEELLELV---QNTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPA 246
           K     +  ++LV    + D + LA +M+ILSG F++ +   ++NIH  LLPSFKG    
Sbjct: 62  KNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAH 121

Query: 247 KQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAI 306
           +QA + GV + G T HFV E++DAG II Q    V   D + T  ++ +  E +    A+
Sbjct: 122 EQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAAL 181

Query: 307 KSYCELRVLPYEMNKTVVF 325
           +      V   E N  + +
Sbjct: 182 QLVASGTVQLGE-NGKICW 199
>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} Length = 209 Back     information, alignment and structure
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]} Length = 164 Back     information, alignment and structure
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 93 Back     information, alignment and structure
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86 Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Length = 83 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
d1jkxa_209 Glycinamide ribonucleotide transformylase, GART {E 100.0
d1meoa_205 Glycinamide ribonucleotide transformylase, GART {H 100.0
d2bw0a2203 10-formyltetrahydrofolate dehydrogenase domain 1 { 100.0
d1fmta2206 Methionyl-tRNAfmet formyltransferase {Escherichia 100.0
d2blna2203 Polymyxin resistance protein ArnA, N-terminal doma 100.0
d1zgha2164 Methionyl-tRNAfmet formyltransferase {Clostridium 99.95
d1zpva183 UPF0237 protein SP0238 {Streptococcus pneumoniae [ 99.73
d1u8sa293 putative transcriptional repressor VC2159 {Vibrio 99.69
d1u8sa186 putative transcriptional repressor VC2159 {Vibrio 99.62
d1y7pa277 Hypothetical protein AF1403, N-terminal domain {Ar 98.08
d1ygya378 Phosphoglycerate dehydrogenase, regulatory (C-term 98.07
d2fgca278 Acetolactate synthase small subunit, IlvH {Thermot 97.92
d2pc6a277 Acetolactate synthase small subunit, IlvH {Nitroso 97.88
d1sc6a384 Phosphoglycerate dehydrogenase, regulatory (C-term 97.75
d2f1fa176 Acetolactate synthase small subunit, IlvH {Escheri 97.57
d2f06a270 Hypothetical protein BT0572 {Bacteroides thetaiota 97.06
d2f06a171 Hypothetical protein BT0572 {Bacteroides thetaiota 96.68
d2qmwa280 Prephenate dehydratase C-terminal domain {Staphylo 96.19
d1phza197 Phenylalanine hydroxylase N-terminal domain {Rat ( 95.81
d2hmfa267 Aspartokinase {Methanococcus jannaschii [TaxId: 21 94.81
d2hmfa3100 Aspartokinase {Methanococcus jannaschii [TaxId: 21 94.81
d1nvmb1157 Acetaldehyde dehydrogenase (acylating) {Pseudomona 94.21
d2cdqa375 Aspartokinase {Thale cress (Arabidopsis thaliana) 92.75
d2cdqa291 Aspartokinase {Thale cress (Arabidopsis thaliana) 91.53
d2d13a1226 Hypothetical protein PH1257 {Archaeon Pyrococcus h 90.58
d1tlta1164 Virulence factor MviM {Escherichia coli [TaxId: 56 88.72
d1ydwa1184 Probable oxidoreductase At4g09670 {Thale cress (Ar 88.55
d2nvwa1237 Galactose/lactose metabolism regulatory protein GA 87.39
d1h6da1221 Glucose-fructose oxidoreductase, N-terminal domain 86.36
d1ekxa2160 Aspartate carbamoyltransferase catalytic subunit { 85.68
d1dxha2185 Ornithine transcarbamoylase {Pseudomonas aeruginos 85.38
d1ml4a2157 Aspartate carbamoyltransferase catalytic subunit { 84.81
d1pvva2163 Ornithine transcarbamoylase {Archaeon Pyrococcus f 84.64
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 83.25
d1lssa_132 Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax 82.99
d1q0qa2151 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E 81.46
d1r0ka2150 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z 81.41
d1zhva266 Hypothetical protein Atu0741 {Agrobacterium tumefa 80.95
>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-45  Score=329.87  Aligned_cols=193  Identities=27%  Similarity=0.398  Sum_probs=177.1

Q ss_pred             ceEEEEEeCCchHHHHHHHHhhcCCCCceEEEEEeCCCCCCCchHHHHHHHCCCCEEEec-CCCC---hhHHHHHHHhc-
Q 020508          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKEN---EREEELLELVQ-  203 (325)
Q Consensus       129 ~ri~v~~Sg~g~~l~~Ll~~~~~~~l~~~I~~Vvt~~~~~~~~~~~~~a~~~gIp~~~~~-~~~~---~~~~~~~~~l~-  203 (325)
                      ||||||+||+||+|++|+++++.+.++++|++|+||++   ++...++|++.++|..... ....   ..+.++.+.++ 
T Consensus         1 MkIaVl~SG~GSnL~aLl~a~~~~~l~~~I~~Visn~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   77 (209)
T d1jkxa_           1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKA---DAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDM   77 (209)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHHTTSSSSEEEEEEESCT---TCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGG
T ss_pred             CEEEEEEecCcHHHHHHHHHHHcCCCCCEEEEEEeCCC---CcccchhhhccccceeeeeccccccccchHHHHHHHHHh
Confidence            69999999999999999999999999999999999874   4678899999999998765 2221   23456777776 


Q ss_pred             -CCCEEEEeccccccChhHHhhcCCCEEEEcCCCCCCCCCCcHHHHHHHhCCcEeEEEEEEecCCCCCCCeEEEEEEeCC
Q 020508          204 -NTDFLVLARYMQILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVS  282 (325)
Q Consensus       204 -~~Dliv~~g~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvh~v~~~~D~G~Ii~Q~~~~I~  282 (325)
                       ++|++|++||++|||+++++.+++++||+|||+||+|||++|++||+.+|++++|+|+|+|++++|+||||.|++++|.
T Consensus        78 ~~~Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~~rG~~p~~~~i~~g~~~~G~t~h~~~~~~D~G~Ii~q~~~~i~  157 (209)
T d1jkxa_          78 YAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVF  157 (209)
T ss_dssp             GCCSEEEESSCCSCCCHHHHHHTTTSEEEEESSCTTSCCSSCHHHHHHHTTCSEEEEEEEECCSSTTCSCEEEEEEEECC
T ss_pred             cCCCEEEEeeeeEecChhhhcccccCEEEeCCchhcccCCcCchhHHHHCCCeeecceEEEecCCCCcccEeeEEEEcCC
Confidence             8999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecCCceeeC
Q 020508          283 HRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF  325 (325)
Q Consensus       283 ~~dt~~~l~~r~~~~~~~ll~~al~~i~~g~~~~~~~~~~~~~  325 (325)
                      ++||..+|++|+...++++++++++.+++|++.+++ +++.++
T Consensus       158 ~~d~~~~l~~k~~~~e~~l~~~~i~~i~~~~i~~~~-~~~~~~  199 (209)
T d1jkxa_         158 AGDSEDDITARVQTQEHAIYPLVISWFADGRLKMHE-NAAWLD  199 (209)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEET
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeEEcC-CEEEEC
Confidence            999999999999999999999999999999999875 787653
>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} Back     information, alignment and structure
>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} Back     information, alignment and structure
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure