Citrus Sinensis ID: 020513

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQRIAELETQIEKGQNKFVATGRHLPI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVlgpdanlkEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQRIAELETQIEKGQNKFVATGRHLPI
Flexible Loop (DISEMBL)
MNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEesisssalESQCEIESLKIDMIALEQTCVEAKKvhkenvqekarMNSLIKelevrtqdsqEIIECLDKENKELKekldsyetngrVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQRIAELETQiekgqnkfvatgrhlpi
Low Complexity Region (SEG)
MNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHikkleesisssalesQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIecldkenkelkeklDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQlkeelraekfkakeeaedlaQEMAELRYQMTSLLEEECKRRACIEQASLQRIAELETQIEKGQNKFVATGRHLPI
Disordered region (IsUnstruct)
*******************EVYSLSEHVHSLELKLVDMEILQDKV**************************************************CEIESLKIDMIALEQTCVEAKK****************************IIECL*************YETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKE************************YQMTSLLEEECKRRACIEQASLQRIA**********************
Disordered Region (DISOPRED)
***SQEI*Y*************************************************************************************************************************************************************************************************************************************************************************************************************************L**
Disordered Region (DISEMBL)
MNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQRIAELETQIEKGQNKFVATGRHLPI
Disordered Region (DISPRO)
MNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQRIAELETQIEKGQNKFVATGRHLPI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNCSQEIDYLQDQLNARNEEVYSLSEHVHSxxxxxxxxxxxxxxxxxxxxxxxxxxxxCLLLMEExxxxxxxxxxxxxxxxxxxxxISSSALESQCExxxxxxxxxxxxxxxxxxxxxHKENVQEKARMNSLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxECKRRACIxxxxxxxxxxxxxxxxxxxxxFVATGRHLPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
255547265	407	conserved hypothetical protein [Ricinus	0.990	0.791	0.610	1e-99
297733914	420	unnamed protein product [Vitis vinifera]	0.990	0.766	0.616	8e-97
147853034	1164	hypothetical protein VITISV_035305 [Viti	0.990	0.276	0.609	2e-94
449439299	390	PREDICTED: uncharacterized protein LOC10	0.947	0.789	0.549	1e-81
356513505	997	PREDICTED: uncharacterized protein LOC10	0.950	0.309	0.572	3e-81
356564927	435	PREDICTED: uncharacterized protein LOC10	0.956	0.714	0.578	3e-81
224135329	295	predicted protein [Populus trichocarpa]	0.870	0.959	0.602	2e-76
297810891	409	hypothetical protein ARALYDRAFT_487621 [	0.981	0.779	0.492	2e-63
30682143	409	myosin heavy chain-like protein [Arabido	0.981	0.779	0.483	4e-62
79327231	328	myosin heavy chain-like protein [Arabido	0.981	0.972	0.483	4e-62

>gi|255547265|ref|XP_002514690.1| conserved hypothetical protein [Ricinus communis] gi|223546294|gb|EEF47796.1| conserved hypothetical protein [Ricinus communis]

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 204/334 (61%), Positives = 253/334 (75%), Gaps = 12/334 (3%)

Query: 1   MNCSQEI-----------DYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLE 49
           +NCSQEI           DYLQDQLNARN EVYSL EHVH LELKLVDM+ L  K+ QL+
Sbjct: 72  LNCSQEIVWISKIITFLTDYLQDQLNARNAEVYSLGEHVHELELKLVDMDDLLVKISQLQ 131

Query: 50  EELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALE 109
           EELR+SDSEC LL++EL+ KE  L+ S   I+KLEES++S  L+SQCEIES+K+D++ALE
Sbjct: 132 EELRKSDSECFLLIQELERKEVELQKSVSFIEKLEESVASFTLDSQCEIESMKLDVMALE 191

Query: 110 QTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGR 169
           Q C E+KK  +E   EK  M+ L++EL+ +  D++EII+CL+KENKEL+ KL + E NGR
Sbjct: 192 QACCESKKKQEETTMEKDTMDGLVQELKNQVYDAEEIIQCLEKENKELRVKLATSEMNGR 251

Query: 170 VFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDAN 229
           +F QKIEEWME +D   L  Q   SELE+   +SKE   CG+V G L SKLA+VL P+++
Sbjct: 252 IFIQKIEEWMENQDNLLLSTQPYSSELEKE-NMSKEMSACGEVLGLLFSKLAIVLAPESD 310

Query: 230 LKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECK 289
           LK+++K +S +I EYE+L+ QLKE+LR EK KAKEEAEDLAQEMAELR+QMT LLEEECK
Sbjct: 311 LKKQMKRLSHKIREYEVLMNQLKEDLREEKLKAKEEAEDLAQEMAELRHQMTGLLEEECK 370

Query: 290 RRACIEQASLQRIAELETQIEKGQNKFVATGRHL 323
           RRACIEQASLQRIAELE QI+K Q K     R L
Sbjct: 371 RRACIEQASLQRIAELEAQIQKEQRKPSFAIRTL 404

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733914|emb|CBI15161.3| unnamed protein product [Vitis vinifera]

 Score =  359 bits (922), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 201/326 (61%), Positives = 243/326 (74%), Gaps = 4/326 (1%)

Query: 2   NCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLL 61
           NCSQEIDYLQDQLNAR+ EV  L EHVHSLELKL D + L+D VG+L +EL+RS+SEC+L
Sbjct: 92  NCSQEIDYLQDQLNARDAEVKCLGEHVHSLELKLADKDNLEDMVGRLMQELKRSNSECML 151

Query: 62  LMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKE 121
           LM+EL++KE  L+ S+L I KLEESISS  LE QCE+ES+K++MI LEQ+C EAKK+  E
Sbjct: 152 LMQELENKEVELQMSSLCIDKLEESISSVTLEFQCEMESMKLEMITLEQSCFEAKKLQDE 211

Query: 122 NVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKI----EE 177
             +EK +MN LI+E +V+ QD+Q++IECLDKENKEL+ KL + E +  +  QKI    EE
Sbjct: 212 ASEEKTKMNGLIQEFQVQLQDAQKMIECLDKENKELRGKLKTSEMDAILLRQKIKEHSEE 271

Query: 178 WMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGM 237
           W+E +D  +L  QS   ELE  F +S E     +V   L  KLA+    D  LKEK++ M
Sbjct: 272 WLENKDESELKTQSSSGELESKFNLSTEMSTSAEVLVPLFPKLAVSATSDVGLKEKMEKM 331

Query: 238 SLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQA 297
           S QI  YELLVKQLKEELR EK KAKEEAEDLAQEMAELRYQ+T +LEEECKRRACIEQA
Sbjct: 332 SHQIHGYELLVKQLKEELREEKLKAKEEAEDLAQEMAELRYQITGMLEEECKRRACIEQA 391

Query: 298 SLQRIAELETQIEKGQNKFVATGRHL 323
           SLQRIAELE QI+K Q K  A  R  
Sbjct: 392 SLQRIAELEAQIQKEQTKSYAAIRRF 417

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853034|emb|CAN78532.1| hypothetical protein VITISV_035305 [Vitis vinifera]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 201/330 (60%), Positives = 241/330 (73%), Gaps = 8/330 (2%)

Query: 2    NCSQEI----DYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDS 57
            NCSQEI    DYLQDQLNAR+ EV  L EH HSLELKL D + L+D VG+L EEL+RS+S
Sbjct: 832  NCSQEIVFLVDYLQDQLNARDAEVKCLGEHAHSLELKLADKDNLEDMVGRLMEELKRSNS 891

Query: 58   ECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKK 117
            EC+ LM+EL++KE  L+ S+L I KLEESISS  LE QCEIES+K++MI LEQ+C EAKK
Sbjct: 892  ECMFLMQELENKEVELQTSSLCIDKLEESISSVTLEFQCEIESMKLEMITLEQSCFEAKK 951

Query: 118  VHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKI-- 175
            +  E  +EK +MN LI+E +V+ QD+Q++IECLDKENKEL+ KL + E +  +  QKI  
Sbjct: 952  LQDEASEEKTKMNGLIQEFQVQLQDAQKMIECLDKENKELRGKLKTSEMDAILLRQKIKE 1011

Query: 176  --EEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEK 233
              EEW+E +D  +L  QS   ELE  F +S E     +V   L  KLA+    D  LKEK
Sbjct: 1012 HSEEWLENKDESELKTQSSSGELESKFNLSTEMSTSAEVLVPLFPKLAVSATSDVXLKEK 1071

Query: 234  IKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRAC 293
            ++ MS QI  YELLVKQLKEELR EK KAKEEAEDLAQEMAELRYQ+T +LEEECKRRAC
Sbjct: 1072 MEKMSHQIHGYELLVKQLKEELREEKLKAKEEAEDLAQEMAELRYQITGMLEEECKRRAC 1131

Query: 294  IEQASLQRIAELETQIEKGQNKFVATGRHL 323
            IEQASLQRIAELE QI+K Q K  A  R  
Sbjct: 1132 IEQASLQRIAELEAQIQKEQTKSYAAIRRF 1161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439299|ref|XP_004137423.1| PREDICTED: uncharacterized protein LOC101221046 [Cucumis sativus] gi|449486970|ref|XP_004157457.1| PREDICTED: uncharacterized protein LOC101230337 [Cucumis sativus]

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 178/324 (54%), Positives = 227/324 (70%), Gaps = 16/324 (4%)

Query: 2   NCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLL 61
           NC+QEIDYLQDQL  RN E+  L +HV SLE KLV ME  Q+K  +LEEE++RS+SECL 
Sbjct: 74  NCTQEIDYLQDQLCTRNTELTYLVDHVESLEFKLVHMEHSQEKASKLEEEVKRSNSECLF 133

Query: 62  LMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKE 121
           LM++L  KE+ LR S  +++KLEESIS+  LESQCEIES+K+DM+A+EQ  +E KK  +E
Sbjct: 134 LMQKLDDKEQELRESNSNVEKLEESISAITLESQCEIESMKLDMLAMEQRYIETKKFQEE 193

Query: 122 NVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEK 181
            + +  +M+ LI+EL    Q++Q  ++ L+ EN+EL+ +LD    N   FC+ +EE +E 
Sbjct: 194 ALSQNDKMDRLIEEL----QNAQRNVKFLETENEELQRELDVSTRNASTFCRSVEELIEN 249

Query: 182 EDRKQLDIQSLVSELERNFTVSKETCF----CGKVFGALLSKLALVLGPDANLKEKIKGM 237
           ++R Q  +        RN    K T      CG V G LL KLA+ L  DAN + K+  M
Sbjct: 250 KERSQNTM--------RNDRDGKLTSILKNSCGDVLGHLLPKLAVALFADANSEAKMDVM 301

Query: 238 SLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQA 297
             QI +YELLV+QLKEELR EK KAKEEAEDLAQEMAELRYQ+T LLEEECKRRACIEQA
Sbjct: 302 KKQILDYELLVEQLKEELREEKLKAKEEAEDLAQEMAELRYQITGLLEEECKRRACIEQA 361

Query: 298 SLQRIAELETQIEKGQNKFVATGR 321
           SLQRIA+LE Q+ KGQN+     R
Sbjct: 362 SLQRIAQLEAQVLKGQNRSFPVAR 385

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513505|ref|XP_003525454.1| PREDICTED: uncharacterized protein LOC100781747 [Glycine max]

 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 178/311 (57%), Positives = 231/311 (74%), Gaps = 2/311 (0%)

Query: 1   MNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECL 60
           +NCSQEIDYLQDQL+ARN EV  L EH+H+LELKL  ME LQ++V +L EEL+RS+S+  
Sbjct: 684 LNCSQEIDYLQDQLSARNAEVNYLEEHIHNLELKLEGMEDLQEEVFRLREELKRSESKQF 743

Query: 61  LLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHK 120
            L++EL +KE+ L  SAL I+KLEES SS  LESQ E+ES+K+DM+ LEQ+  EAKK+  
Sbjct: 744 SLIQELDTKEKELEKSALSIEKLEESFSSITLESQFEVESMKLDMMVLEQSLFEAKKIQD 803

Query: 121 ENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWME 180
           E + E  RM+  I+EL+V  QD+Q+II  L++E +EL+EKLD+   N R+  QK E W+E
Sbjct: 804 ETLDENNRMSRSIEELQVALQDAQKIIITLNEEIRELEEKLDTANQNSRISSQKDEYWLE 863

Query: 181 KEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQ 240
            +DR QL+ QS ++    N T+ +E     +V G  + +LA++L P A+LK K++ MS Q
Sbjct: 864 NKDRSQLETQSSLNVRGNNSTM-QEDISTYEVCGPHVGRLAMILDPAADLKGKME-MSQQ 921

Query: 241 ICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQ 300
           I EYE L+K+LKEELR EK KAKEEAEDL QEMAELRYQ T  LEEECKRRAC E ASLQ
Sbjct: 922 IQEYECLIKKLKEELREEKLKAKEEAEDLVQEMAELRYQFTGSLEEECKRRACFEHASLQ 981

Query: 301 RIAELETQIEK 311
           RIAELE Q+++
Sbjct: 982 RIAELEAQLKR 992

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564927|ref|XP_003550698.1| PREDICTED: uncharacterized protein LOC100805706 [Glycine max]

 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 181/313 (57%), Positives = 228/313 (72%), Gaps = 2/313 (0%)

Query: 1   MNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECL 60
           +NCSQEIDYLQDQL+A N EV  L EH+ SLELKL  ME LQ++V +L EEL+RS+S+  
Sbjct: 73  LNCSQEIDYLQDQLSASNTEVNYLEEHIRSLELKLEGMEDLQEEVFRLREELKRSNSKHF 132

Query: 61  LLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHK 120
            L++EL +KE  L  SAL I+KLEES SS  LESQ E+ES+K+DM+ALEQ+  EAKK+  
Sbjct: 133 FLIQELDTKEIELEKSALSIEKLEESFSSITLESQFEVESMKLDMMALEQSLFEAKKIQD 192

Query: 121 ENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWME 180
           E + E  RM+  I+EL+V  QD+Q+II  L++EN++LKEKLD    N R+  QK E W+E
Sbjct: 193 ETLDENNRMSRSIEELQVALQDAQKIIISLNEENRKLKEKLDIANKNSRISSQKDEYWLE 252

Query: 181 KEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQ 240
             DR QL+ QS ++    N T+ ++    G V G  + +LA++L   A+LK K++ MS Q
Sbjct: 253 NNDRLQLETQSSLNGRGNNSTILEDIRTYG-VHGPHVGRLAMILYLAADLKGKME-MSQQ 310

Query: 241 ICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQ 300
           I EYE L+K+LKEELR EK +AKEEAEDL QEMAELRYQ TS LEEECKRRACIE ASLQ
Sbjct: 311 IQEYECLIKKLKEELREEKLRAKEEAEDLVQEMAELRYQFTSSLEEECKRRACIEHASLQ 370

Query: 301 RIAELETQIEKGQ 313
           RIAELE Q   GQ
Sbjct: 371 RIAELEAQAATGQ 383

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135329|ref|XP_002322042.1| predicted protein [Populus trichocarpa] gi|222869038|gb|EEF06169.1| predicted protein [Populus trichocarpa]

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 177/294 (60%), Positives = 219/294 (74%), Gaps = 11/294 (3%)

Query: 38  MEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCE 97
           ME LQ   GQL EEL+R DSE LLL++EL+SKE  L+ SAL I KLEESISS  L+SQCE
Sbjct: 1   MEHLQANNGQLREELKRCDSEHLLLLQELESKEIELQESALCIGKLEESISSLTLDSQCE 60

Query: 98  IESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKEL 157
           IES+K+DMIALEQ C +AKK  +E +QE ARMN LIKELE +  +++E IEC++KEN EL
Sbjct: 61  IESMKLDMIALEQACFKAKKTQEETIQENARMNGLIKELEFQILEAKETIECVEKENIEL 120

Query: 158 KEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALL 217
           ++KL + + N ++F Q+IEEW+E +D  QL+ QS  SE+E    +SKE     +  G   
Sbjct: 121 RDKLVTSDVNSKLFLQQIEEWLENKDTSQLNTQSCSSEIEHQSNMSKEM---REALGPCF 177

Query: 218 SKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELR 277
           SKLA +LG ++NLKE ++ MS QI +YE+LVKQLK+ELR EK KAKEEA+DLAQEMAELR
Sbjct: 178 SKLATLLGSESNLKEWMESMSHQIRKYEVLVKQLKDELREEKSKAKEEADDLAQEMAELR 237

Query: 278 YQMTSLLEEECKRRACIEQASLQRIAELETQ--------IEKGQNKFVATGRHL 323
           YQMT LLEEECKRRACIEQASLQRI+ELE Q        IE+ + KF A   HL
Sbjct: 238 YQMTGLLEEECKRRACIEQASLQRISELEAQVFLVFPSKIERERRKFFAAVGHL 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810891|ref|XP_002873329.1| hypothetical protein ARALYDRAFT_487621 [Arabidopsis lyrata subsp. lyrata] gi|297319166|gb|EFH49588.1| hypothetical protein ARALYDRAFT_487621 [Arabidopsis lyrata subsp. lyrata]

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 160/325 (49%), Positives = 229/325 (70%), Gaps = 6/325 (1%)

Query: 1   MNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECL 60
           +NC +EIDYL+DQL  R++EV  L+EH+H LE KL +   L+++V  L +EL  S SE L
Sbjct: 88  LNCYKEIDYLRDQLIFRSKEVNYLNEHLHDLEFKLAESRNLEEEVNSLRDELCMSKSEHL 147

Query: 61  LLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHK 120
           LL++EL+SKE  L+ S+L ++KLEE+ISS  LES CEIES+KID+ ALEQ   +A K+ +
Sbjct: 148 LLLQELESKEIELQCSSLSLEKLEETISSLTLESLCEIESMKIDITALEQALFDAMKIQE 207

Query: 121 ENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWME 180
           E++QEK ++  +I+E + ++Q +QE ++ ++K+N+EL+EK ++ E + + F Q  +E +E
Sbjct: 208 ESIQEKHQLKGIIEESQFQSQRAQENVKYIEKQNEELREKFNASEKSIKEFFQSTKERLE 267

Query: 181 KEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQ 240
            ED + L +    +EL     +S E   C   F A++ KL   L  + NL +K++GM+ Q
Sbjct: 268 SEDEEPLTVGCFFAELSHVLPMSNEVRNC---FDAIMKKLE--LSQNVNLTDKVEGMAKQ 322

Query: 241 ICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQ 300
           I ++E +VKQLKEEL+ EK KAKEEAEDL QEMAELRY+MT LL+EE  RR CIEQASLQ
Sbjct: 323 IHQHEDVVKQLKEELKQEKLKAKEEAEDLTQEMAELRYKMTCLLDEERNRRVCIEQASLQ 382

Query: 301 RIAELETQIEKGQNKFVATGRHLPI 325
           RIAELE QI K + K  ++   LP+
Sbjct: 383 RIAELEAQI-KREIKKPSSTEMLPL 406

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30682143|ref|NP_196406.2| myosin heavy chain-like protein [Arabidopsis thaliana] gi|79327239|ref|NP_001031851.1| myosin heavy chain-like protein [Arabidopsis thaliana] gi|222423567|dbj|BAH19753.1| AT5G07890 [Arabidopsis thaliana] gi|332003833|gb|AED91216.1| myosin heavy chain-like protein [Arabidopsis thaliana] gi|332003835|gb|AED91218.1| myosin heavy chain-like protein [Arabidopsis thaliana]

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 157/325 (48%), Positives = 227/325 (69%), Gaps = 6/325 (1%)

Query: 1   MNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECL 60
           +NC +EIDYL+DQL  R++EV  L+EH+H LE KL +   L+++V  L +EL  S SE L
Sbjct: 88  LNCYKEIDYLRDQLIFRSKEVNYLNEHLHDLEFKLAESRNLEEEVNSLRDELCMSKSEHL 147

Query: 61  LLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHK 120
           LL++EL+SKE  L+ S+L ++KLEE+ISS  LES CEIES+K+D+ ALEQ   +A K+ +
Sbjct: 148 LLLQELESKEIELQCSSLTLEKLEETISSLTLESLCEIESMKLDITALEQALFDAMKIQE 207

Query: 121 ENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWME 180
           E++QEK ++  +I+E + ++Q ++E ++ ++K+N++L+EK  + E + + F Q  +E +E
Sbjct: 208 ESIQEKDQLKGIIEESQFQSQRAKENVKYIEKQNEDLREKFTASEKSIKDFFQSTKERLE 267

Query: 181 KEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQ 240
            ED + L+     +EL     VS E   C   F A++ KL   L  + NL +K++GM  Q
Sbjct: 268 SEDEQPLNAMCFFAELSHVLPVSNEVRNC---FDAIMKKLE--LSQNVNLIDKVEGMGKQ 322

Query: 241 ICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQ 300
           I ++E +VKQLKEEL+ EK KAKEEAEDL QEMAELRY+MT LL+EE  RR CIEQASLQ
Sbjct: 323 IHQHEDVVKQLKEELKQEKLKAKEEAEDLTQEMAELRYKMTCLLDEERNRRVCIEQASLQ 382

Query: 301 RIAELETQIEKGQNKFVATGRHLPI 325
           RI+ELE QI++   K  A+   LP+
Sbjct: 383 RISELEAQIKRDVKK-PASNEMLPL 406

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79327231|ref|NP_001031850.1| myosin heavy chain-like protein [Arabidopsis thaliana] gi|332003834|gb|AED91217.1| myosin heavy chain-like protein [Arabidopsis thaliana]

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 157/325 (48%), Positives = 227/325 (69%), Gaps = 6/325 (1%)

Query: 1   MNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECL 60
           +NC +EIDYL+DQL  R++EV  L+EH+H LE KL +   L+++V  L +EL  S SE L
Sbjct: 7   LNCYKEIDYLRDQLIFRSKEVNYLNEHLHDLEFKLAESRNLEEEVNSLRDELCMSKSEHL 66

Query: 61  LLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHK 120
           LL++EL+SKE  L+ S+L ++KLEE+ISS  LES CEIES+K+D+ ALEQ   +A K+ +
Sbjct: 67  LLLQELESKEIELQCSSLTLEKLEETISSLTLESLCEIESMKLDITALEQALFDAMKIQE 126

Query: 121 ENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWME 180
           E++QEK ++  +I+E + ++Q ++E ++ ++K+N++L+EK  + E + + F Q  +E +E
Sbjct: 127 ESIQEKDQLKGIIEESQFQSQRAKENVKYIEKQNEDLREKFTASEKSIKDFFQSTKERLE 186

Query: 181 KEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQ 240
            ED + L+     +EL     VS E   C   F A++ KL   L  + NL +K++GM  Q
Sbjct: 187 SEDEQPLNAMCFFAELSHVLPVSNEVRNC---FDAIMKKLE--LSQNVNLIDKVEGMGKQ 241

Query: 241 ICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQ 300
           I ++E +VKQLKEEL+ EK KAKEEAEDL QEMAELRY+MT LL+EE  RR CIEQASLQ
Sbjct: 242 IHQHEDVVKQLKEELKQEKLKAKEEAEDLTQEMAELRYKMTCLLDEERNRRVCIEQASLQ 301

Query: 301 RIAELETQIEKGQNKFVATGRHLPI 325
           RI+ELE QI++   K  A+   LP+
Sbjct: 302 RISELEAQIKRDVKK-PASNEMLPL 325

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
TAIR|locus:2142858	409	AT5G07890 "AT5G07890" [Arabido	0.981	0.779	0.387	5.1e-51

TAIR|locus:2142858 AT5G07890 "AT5G07890" [Arabidopsis thaliana (taxid:3702)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 126/325 (38%), Positives = 185/325 (56%)

Query:     1 MNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECL 60
             +NC +EIDYL+DQL  R++EV  L+EH+H LE KL +   L+++V  L +EL  S SE L
Sbjct:    88 LNCYKEIDYLRDQLIFRSKEVNYLNEHLHDLEFKLAESRNLEEEVNSLRDELCMSKSEHL 147

Query:    61 LLMEELQSKEERLRNSALHXXXXXXXXXXXXXXXQCEIESLKIDMIALEQTCVEAKKVHK 120
             LL++EL+SKE  L+ S+L                 CEIES+K+D+ ALEQ   +A K+ +
Sbjct:   148 LLLQELESKEIELQCSSLTLEKLEETISSLTLESLCEIESMKLDITALEQALFDAMKIQE 207

Query:   121 ENVQEKARMNSLIKELEVRTQDSQEIIXXXXXXXXXXXXXXDSYETNGRVFCQKIEEWME 180
             E++QEK ++  +I+E + ++Q ++E +               + E + + F Q  +E +E
Sbjct:   208 ESIQEKDQLKGIIEESQFQSQRAKENVKYIEKQNEDLREKFTASEKSIKDFFQSTKERLE 267

Query:   181 KEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQ 240
              ED + L+     +EL     VS E   C   F A++ KL L    + NL +K++GM  Q
Sbjct:   268 SEDEQPLNAMCFFAELSHVLPVSNEVRNC---FDAIMKKLEL--SQNVNLIDKVEGMGKQ 322

Query:   241 ICEYELLVKQXXXXXXXXXXXXXXXXXXXXQEMAELRYQMTSLLEEECKRRACIEQASLQ 300
             I ++E +VKQ                    QEMAELRY+MT LL+EE  RR CIEQASLQ
Sbjct:   323 IHQHEDVVKQLKEELKQEKLKAKEEAEDLTQEMAELRYKMTCLLDEERNRRVCIEQASLQ 382

Query:   301 RIAELETQIEKGQNKFVATGRHLPI 325
             RI+ELE QI++   K  A+   LP+
Sbjct:   383 RISELEAQIKRDVKK-PASNEMLPL 406


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.352    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      325       276   0.00079  115 3  11 23  0.39    34
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  190 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.47u 0.12s 27.59t   Elapsed:  00:00:01
  Total cpu time:  27.48u 0.12s 27.60t   Elapsed:  00:00:01
  Start:  Tue May 21 04:33:50 2013   End:  Tue May 21 04:33:51 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016267001 SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (405 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	325
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-09
PLN02939	977	PLN02939, PLN02939, transferase, transferring glyc	3e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 79/328 (24%), Positives = 155/328 (47%), Gaps = 27/328 (8%)

Query: 2   NCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDM----EILQDKVGQLEEELRRSDS 57
              +E+  L+ QL    EE+ SL   + SLE  L ++    E L+ ++ +L+ EL   + 
Sbjct: 671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEE 730

Query: 58  ECLLLMEELQSKEERLRNSALHIKKLEE----------SISSSALESQCEIESLKIDMIA 107
           E   L   L+  EE L      +++L+E          S+  +  + + EIE L+    A
Sbjct: 731 ELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQA 790

Query: 108 LEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETN 167
           L++   E ++  +E  +    +   ++ LE R +  ++ IE L++E +EL+EKLD  E  
Sbjct: 791 LQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEE 850

Query: 168 GRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPD 227
                +++EE  E+ +  + + + L  EL+      +E          L  +L  +    
Sbjct: 851 LEELEKELEELKEELEELEAEKEELEDELKELEEEKEE----------LEEELRELESEL 900

Query: 228 ANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEE 287
           A LKE+I+ +  ++ E E  +++L+ EL   + + +EE ED  +   E   +    LEEE
Sbjct: 901 AELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELE---REIERLEEE 957

Query: 288 CKRRACIEQASLQRIAELETQIEKGQNK 315
            +    +   +++   E+E + E+ +++
Sbjct: 958 IEALGPVNLRAIEEYEEVEERYEELKSQ 985

Length = 1163

>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 59/256 (23%), Positives = 112/256 (43%), Gaps = 22/256 (8%)

Query: 31  LELKLVDMEILQDKVGQLEEELRRSDSECLLLMEE------LQSKEERLRNSALHIKKLE 84
           LE  L + E LQ K+  LE  L  +D+   L  +E      L+ + E+LRN  L     E
Sbjct: 158 LEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATE 217

Query: 85  ESISSSALES----QCEIESLKIDMIALEQTCVEAKKVHKENV---QEKARMNSLIKELE 137
                S  +     + E   LK D+  L+   +E  +  +      +E++ +++ ++ELE
Sbjct: 218 GLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELE 277

Query: 138 VRTQDSQEIIECLDKENKE-LKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSEL 196
            +   +QE +  L     +   EK+++ +        ++E+     D+ Q D++  V +L
Sbjct: 278 SKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQ-DLRDKVDKL 336

Query: 197 ERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELR 256
           E +   +  + F       L  KL L       L+E+++    +I  Y  L ++  +E +
Sbjct: 337 EASLKEANVSKFSSYKVELLQQKLKL-------LEERLQASDHEIHSYIQLYQESIKEFQ 389

Query: 257 AEKFKAKEEAEDLAQE 272
               K KEE++  + E
Sbjct: 390 DTLSKLKEESKKRSLE 405

Length = 977

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 53/256 (20%), Positives = 113/256 (44%), Gaps = 6/256 (2%)

Query: 22  YSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIK 81
           Y   E +   E      E ++ ++  LEEEL +   E   L + L+  E+ L      IK
Sbjct: 223 YEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK 282

Query: 82  KLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQ 141
            L E      L  + +I  L+ ++ +LE++  E ++  ++  +  A++ + I +L    +
Sbjct: 283 DLGE---EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE 339

Query: 142 DSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFT 201
           + +  IE   K   +L E+    +        ++EE  ++    + +++    +LE+   
Sbjct: 340 ELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK--- 396

Query: 202 VSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFK 261
           + +E     +    L  +L  +    A+L   I G+  +I E E   +    E++ +++K
Sbjct: 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWK 456

Query: 262 AKEEAEDLAQEMAELR 277
            ++ A DL++   EL 
Sbjct: 457 LEQLAADLSKYEQELY 472

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 62/272 (22%), Positives = 132/272 (48%), Gaps = 6/272 (2%)

Query: 47  QLEEELRRSDSECLLL-MEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDM 105
           +L+ ELR  +   L+L +EEL+ + E L+      ++  E +++   E + ++E L++++
Sbjct: 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV 276

Query: 106 IALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYE 165
             LE+   E +K       E +R+    + L  R  + +  +E L+ + +EL+ KLD   
Sbjct: 277 SELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336

Query: 166 TNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLG 225
                  +K+EE  E+ +  + +++ L +ELE       E     +    L SK+A +  
Sbjct: 337 EELAELEEKLEELKEELESLEAELEELEAELE-ELESRLEELE--EQLETLRSKVAQLEL 393

Query: 226 PDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKE-EAEDLAQEMAELRYQMTSLL 284
             A+L  +I+ +  ++   E   ++L++E+     K +E E ++L  E+ EL  ++  L 
Sbjct: 394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQ 453

Query: 285 EEECKRRACIEQASLQRIAELETQIEKGQNKF 316
           EE  +    +E+   + + E E  ++  + + 
Sbjct: 454 EELERLEEALEELR-EELEEAEQALDAAEREL 484

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 60/269 (22%), Positives = 129/269 (47%), Gaps = 11/269 (4%)

Query: 47  QLEEELRRSDSECLLL-MEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDM 105
           +L+ ELR  +   LL  ++EL+ + E L      +++  E +     E++ EIE LK ++
Sbjct: 217 ELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSEL 276

Query: 106 IALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYE 165
             L +   E ++   E  +E   +   I  L  R ++ +  +E L++  +ELKEK+++ +
Sbjct: 277 EELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALK 336

Query: 166 TNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLG 225
                    +EE  +     +   + L  +L       +E       F AL  +LA +  
Sbjct: 337 EELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEEL------FEALREELAELEA 390

Query: 226 PDANLKEKIKGMSLQICEYELLVKQLK---EELRAEKFKAKEEAEDLAQEMAELRYQMTS 282
             A ++ +++ +  +I   E  +++L    E+L+ E  + + E E+L  E+ EL  ++  
Sbjct: 391 ELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEE 450

Query: 283 LLEEECKRRACIEQASLQRIAELETQIEK 311
           L E+  + R  +++   + +AEL+ ++++
Sbjct: 451 LEEQLEELRDRLKELE-RELAELQEELQR 478

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	96.68
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	95.44
PRK11637	428	AmiB activator; Provisional	93.98
PRK02224	880	chromosome segregation protein; Provisional	93.71
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	93.63
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	93.26
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	92.78
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	90.78
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	88.93
PHA02562	562	46 endonuclease subunit; Provisional	87.84
PRK09039	343	hypothetical protein; Validated	87.66
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	87.57
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	86.9
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	84.71
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	84.65
PRK01156	895	chromosome segregation protein; Provisional	80.45

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=96.68  E-value=1.2  Score=48.54  Aligned_cols=173  Identities=29%  Similarity=0.343  Sum_probs=93.6

Q ss_pred             chhhhhhhHHHhhhhhhhhhhhhhhhhhhhhhhccccchHHHHH----HHHHHHh-------hccchhHHHHHHhhhHHH
Q 020513            3 CSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVG----QLEEELR-------RSDSECLLLMEELQSKEE   71 (325)
Q Consensus         3 C~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~----~l~eEL~-------rS~Se~~lL~qEle~kE~   71 (325)
                      +..+|+.++.++.....+++.+.-++..++-.+.++..-...+.    .++.++.       .-.+..=.+=+++.....
T Consensus       672 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  751 (1163)
T COG1196         672 LEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEE  751 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999988888877765443333    3333333       222222222233333233


Q ss_pred             HhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHH---HHHHHHhhhhhhhH----HHHHHHHHHHHHHHHHhHhHH
Q 020513           72 RLRNSALHIKKLEESISSSALESQCEIESLKIDMIALE---QTCVEAKKVHKENV----QEKARMNSLIKELEVRTQDSQ  144 (325)
Q Consensus        72 eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLE---Q~lfdA~k~q~et~----~ek~~m~~~i~Elq~q~q~Aq  144 (325)
                      ++...--.++++++.+.++.-    .+..++-++..+.   ++.-.+-.-....+    ...+.+.+-+...+.+.+.+.
T Consensus       752 ~~~~~~~~~~~~~~~l~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  827 (1163)
T COG1196         752 ELEELQERLEELEEELESLEE----ALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLE  827 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344445555555554421    1133333333333   12222211111111    223344444555555556667


Q ss_pred             HHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHH
Q 020513          145 EIIECLDKENKELKEKLDSYETNGRVFCQKIEEWM  179 (325)
Q Consensus       145 ~~i~~L~kenkeL~ekl~~se~n~r~~~q~~~e~l  179 (325)
                      .-|..+..+..++.+++.....++..+-...++..
T Consensus       828 ~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  862 (1163)
T COG1196         828 QEIEELEEEIEELEEKLDELEEELEELEKELEELK  862 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            77777777777777777777666666555555544

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=95.44  E-value=3.9  Score=42.40  Aligned_cols=40  Identities=30%  Similarity=0.496  Sum_probs=25.4

Q ss_pred             HhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q 020513          241 ICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMT  281 (325)
Q Consensus       241 i~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmT  281 (325)
                      |.+|+.+.+++ +.|+.+.-...+....|.+-+..|+..+.
T Consensus       978 i~~~~~~~~~~-~~l~~q~~dl~~~~~~l~~~i~~l~~~~~ 1017 (1164)
T TIGR02169       978 IQEYEEVLKRL-DELKEKRAKLEEERKAILERIEEYEKKKR 1017 (1164)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46676665554 35666666666777777777777774433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK11637 AmiB activator; Provisional

Probab=93.98  E-value=6.3  Score=38.12  Aligned_cols=87  Identities=13%  Similarity=0.231  Sum_probs=60.2

Q ss_pred             ccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHH
Q 020513           93 ESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFC  172 (325)
Q Consensus        93 eSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se~n~r~~~  172 (325)
                      +.+=++.+++-.+..+++.+-+..+-..+...+.+.++.-|..++.++.+.+.-|..++.+...+...+...+.......
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~  123 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE  123 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556667777777777777777777777777777777777777777777777777777777777766666655555555


Q ss_pred             HHhHHHH
Q 020513          173 QKIEEWM  179 (325)
Q Consensus       173 q~~~e~l  179 (325)
                      ..+..++
T Consensus       124 ~~l~~rl  130 (428)
T PRK11637        124 RLLAAQL  130 (428)
T ss_pred             HHHHHHH
Confidence            4554444

>PRK02224 chromosome segregation protein; Provisional

Probab=93.71  E-value=9.9  Score=39.42  Aligned_cols=25  Identities=28%  Similarity=0.296  Sum_probs=13.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhH
Q 020513          260 FKAKEEAEDLAQEMAELRYQMTSLL  284 (325)
Q Consensus       260 lKAKEEAEDLtQEMAELRYQmTglL  284 (325)
                      -.+.+.++.|..++++||-.++...
T Consensus       533 e~~~~~~~~l~~e~~~l~~~~~~~~  557 (880)
T PRK02224        533 EEKRERAEELRERAAELEAEAEEKR  557 (880)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555566666666655554433

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=93.63  E-value=10  Score=39.38  Aligned_cols=9  Identities=22%  Similarity=0.409  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q 020513          269 LAQEMAELR  277 (325)
Q Consensus       269 LtQEMAELR  277 (325)
                      +..++..++
T Consensus       474 ~~~~l~~l~  482 (1164)
T TIGR02169       474 LKEEYDRVE  482 (1164)
T ss_pred             HHHHHHHHH
Confidence            333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=93.26  E-value=11  Score=38.73  Aligned_cols=29  Identities=21%  Similarity=0.237  Sum_probs=11.5

Q ss_pred             HHHHHHhHhHHHHHHHHHHhhHHHHHhhh
Q 020513          134 KELEVRTQDSQEIIECLDKENKELKEKLD  162 (325)
Q Consensus       134 ~Elq~q~q~Aq~~i~~L~kenkeL~ekl~  162 (325)
                      .+++.++..++..+..+..+...++..+.
T Consensus       792 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~  820 (1179)
T TIGR02168       792 EQLKEELKALREALDELRAELTLLNEEAA  820 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444433333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=92.78  E-value=7.2  Score=35.22  Aligned_cols=226  Identities=27%  Similarity=0.310  Sum_probs=146.6

Q ss_pred             hhhhhHHHhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHh
Q 020513            6 EIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEE   85 (325)
Q Consensus         6 EIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEE   85 (325)
                      +||=..+++.-=..++.......+..|-   +...|.-++..|.++|-+.....--..+-|+..+..+..+--....||.
T Consensus         9 eld~~~~~~~~~~~~l~~~~~~~~~aE~---e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~   85 (237)
T PF00261_consen    9 ELDEAEERLEEAEEKLKEAEKRAEKAEA---EVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLEN   85 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444444444444444444443   3345677777788888887777777777777777777777667777773


Q ss_pred             hhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhcc
Q 020513           86 SISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYE  165 (325)
Q Consensus        86 sisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~se  165 (325)
                      ...+.  +       -|  |..||+.|=+|+...+++-.--+-..+-+.-++..+..|.+-++.++...++|.+.|..-.
T Consensus        86 r~~~~--e-------er--i~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~  154 (237)
T PF00261_consen   86 REQSD--E-------ER--IEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVG  154 (237)
T ss_dssp             HHHHH--H-------HH--HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--H-------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence            32211  1       12  4578999999999999988888888888889999999999999999999999999998876


Q ss_pred             chhHHHHHHhHHHHhhhhhhhhhhhhhhhhhhhccccccccccchhhhHHHHHHHHHhhCCCCchHHHHHhHHHHHhhHH
Q 020513          166 TNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYE  245 (325)
Q Consensus       166 ~n~r~~~q~~~e~le~ed~~~l~~q~~~~~l~~~~~~s~~~~~c~~~f~~l~~kl~~~~~~d~~l~~kme~Ms~qi~eyE  245 (325)
                      .|.+.+-.+....-+.++..                        ..-+..|-.+|.-+       -.-.+..-+.+..++
T Consensus       155 ~~lk~lE~~~~~~~~re~~~------------------------e~~i~~L~~~lkea-------E~Rae~aE~~v~~Le  203 (237)
T PF00261_consen  155 NNLKSLEASEEKASEREDEY------------------------EEKIRDLEEKLKEA-------ENRAEFAERRVKKLE  203 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhhhHHHHHH------------------------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence            66654433322111111110                        00011222222111       122344556777888


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 020513          246 LLVKQLKEELRAEKFKAKEEAEDLAQEMAEL  276 (325)
Q Consensus       246 ~LvkQLKeELreEKlKAKEEAEDLtQEMAEL  276 (325)
                      --|..|.++|...|.+-+.=..+|-+-|++|
T Consensus       204 ~~id~le~eL~~~k~~~~~~~~eld~~l~el  234 (237)
T PF00261_consen  204 KEIDRLEDELEKEKEKYKKVQEELDQTLNEL  234 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8899999999999988888777777777765

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=90.78  E-value=24  Score=37.10  Aligned_cols=59  Identities=29%  Similarity=0.357  Sum_probs=38.4

Q ss_pred             hhHHHhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHH
Q 020513            9 YLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKE   70 (325)
Q Consensus         9 YLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE   70 (325)
                      +||.+|----.|-+.|-.-...|+=.+   ..+..+|..|..+|..+..+|.-|-++.+...
T Consensus       140 ~lQ~qlE~~qkE~eeL~~~~~~Le~e~---~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~  198 (546)
T PF07888_consen  140 LLQNQLEECQKEKEELLKENEQLEEEV---EQLREEVERLEAELEQEEEEMEQLKQQQKELT  198 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466666655566665555555555444   55778888888888888888777666554433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR00606 rad50 rad50

Probab=88.93  E-value=43  Score=37.34  Aligned_cols=22  Identities=32%  Similarity=0.261  Sum_probs=17.1

Q ss_pred             hHHHHHhhHHHHHHHHHHHHHH
Q 020513          236 GMSLQICEYELLVKQLKEELRA  257 (325)
Q Consensus       236 ~Ms~qi~eyE~LvkQLKeELre  257 (325)
                      .+.-+...++.-|.+|+.+|.+
T Consensus      1072 ~l~g~~k~le~qi~~l~~eL~e 1093 (1311)
T TIGR00606      1072 LALGRQKGYEKEIKHFKKELRE 1093 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc
Confidence            4456677888888899999876

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PHA02562 46 endonuclease subunit; Provisional

Probab=87.84  E-value=28  Score=33.91  Aligned_cols=52  Identities=12%  Similarity=0.259  Sum_probs=31.4

Q ss_pred             hHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Q 020513          230 LKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTS  282 (325)
Q Consensus       230 l~~kme~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmTg  282 (325)
                      |.+.+..+..++..++..+..+.+..++ ..++.....++.+.+...|..+..
T Consensus       304 l~d~i~~l~~~l~~l~~~i~~~~~~~~~-~~~~~~~i~el~~~i~~~~~~i~~  355 (562)
T PHA02562        304 IKDKLKELQHSLEKLDTAIDELEEIMDE-FNEQSKKLLELKNKISTNKQSLIT  355 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566667777777777777766655542 444455555566666666655544

>PRK09039 hypothetical protein; Validated

Probab=87.66  E-value=28  Score=33.66  Aligned_cols=132  Identities=16%  Similarity=0.235  Sum_probs=88.7

Q ss_pred             hhHHHhhhhhhhhhhhhhhhhh----hhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHH
Q 020513            9 YLQDQLNARNEEVYSLSEHVHS----LELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLE   84 (325)
Q Consensus         9 YLqDQLn~Rn~Evn~l~EHih~----LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLE   84 (325)
                      ||.+|+.-+..|+..|..+|-+    |.+--....+++.+|..++..+.           -++....          .|+
T Consensus        43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~-----------~a~~~r~----------~Le  101 (343)
T PRK09039         43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS-----------AAEAERS----------RLQ  101 (343)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-----------HHHHHHH----------HHH
Confidence            6777777788887777777755    34555666788888888888776           2222222          333


Q ss_pred             hhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhc
Q 020513           85 ESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSY  164 (325)
Q Consensus        85 EsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~s  164 (325)
                      ..+...    .=.--.+.--...|...|=..+..-.+.-..-.+++.-|..|+-|+...+.-|+-.+.+.++.+.++...
T Consensus       102 ~~~~~~----~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L  177 (343)
T PRK09039        102 ALLAEL----AGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL  177 (343)
T ss_pred             HHHhhh----hhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222211    0001233444556677888888887788788888888888888888888888888888888887777764


Q ss_pred             c
Q 020513          165 E  165 (325)
Q Consensus       165 e  165 (325)
                      .
T Consensus       178 ~  178 (343)
T PRK09039        178 G  178 (343)
T ss_pred             H
Confidence            3

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=87.57  E-value=50  Score=36.46  Aligned_cols=55  Identities=25%  Similarity=0.301  Sum_probs=35.3

Q ss_pred             hHHHhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHH
Q 020513           10 LQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLME   64 (325)
Q Consensus        10 LqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~q   64 (325)
                      |+.++..-...+......+.++.-++........+++....++.+.-+..---+.
T Consensus       672 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  726 (1163)
T COG1196         672 LEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA  726 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666667777777777777777777766666666666666665444333333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=86.90  E-value=38  Score=34.39  Aligned_cols=271  Identities=20%  Similarity=0.274  Sum_probs=154.0

Q ss_pred             hhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhH-------HHH----HHhhhHHHHhhhhhhhHHHH
Q 020513           15 NARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECL-------LLM----EELQSKEERLRNSALHIKKL   83 (325)
Q Consensus        15 n~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~-------lL~----qEle~kE~eLq~sal~IeKL   83 (325)
                      .+|+.=.+--.+.+...+......+.|.-+|..+.+.|-.+...|.       -+.    +...+-+.+|..+--.++.|
T Consensus       151 ~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L  230 (522)
T PF05701_consen  151 DAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEEL  230 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3577778888889999999999999999999999999988765443       111    33344445566666666777


Q ss_pred             Hhhhhccc-cccccchhhhhhhHHHHHHHHHHHhh--hhhhh--HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHH
Q 020513           84 EESISSSA-LESQCEIESLKIDMIALEQTCVEAKK--VHKEN--VQEKARMNSLIKELEVRTQDSQEIIECLDKENKELK  158 (325)
Q Consensus        84 EEsisS~t-LeSQcEIESmKLD~~aLEQ~lfdA~k--~q~et--~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~  158 (325)
                      ...+++.. |++  ....-.-|+..|-.-|+.++.  ...+.  -.....+...+.-....|.+|+..+.....+...|+
T Consensus       231 ~~e~~~~k~Le~--kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~  308 (522)
T PF05701_consen  231 KEELEAAKDLES--KLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLR  308 (522)
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66663321 222  222233455566666666654  11111  111223333455555566666666665555555555


Q ss_pred             HhhhhccchhHHHHHHhHHHHhhhhhhhhhhhhhhhhhhhccccccccccchhhhHHHHHHHHHhhCCCCchHHHHHhHH
Q 020513          159 EKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMS  238 (325)
Q Consensus       159 ekl~~se~n~r~~~q~~~e~le~ed~~~l~~q~~~~~l~~~~~~s~~~~~c~~~f~~l~~kl~~~~~~d~~l~~kme~Ms  238 (325)
                      ....+-..........+..-.++........++...++                 ..+-..|..+-....+.++.|.+|.
T Consensus       309 ~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL-----------------~~~r~eLea~~~~e~~~k~~~~~l~  371 (522)
T PF05701_consen  309 ASVESLRSELEKEKEELERLKEREKEASSEVSSLEAEL-----------------NKTRSELEAAKAEEEKAKEAMSELP  371 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH-----------------HHHHHHHHHHHhhhcchhhhHHHHH
Confidence            44333221111112222222222222222222222222                 2334556666567777788899999


Q ss_pred             HHHhhHHHHHHHHHH---HHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 020513          239 LQICEYELLVKQLKE---ELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQRIAEL  305 (325)
Q Consensus       239 ~qi~eyE~LvkQLKe---ELreEKlKAKEEAEDLtQEMAELRYQmTglLEEEcKRRaCIEQASlQrIaEL  305 (325)
                      ..+++.-.-..+.|.   ..+++-.++|.+++.....+...=-.+.-.+.+-=.=|+. |..++..|.-|
T Consensus       372 ~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKas-Ea~Ala~ik~l  440 (522)
T PF05701_consen  372 KALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKAS-EALALAEIKAL  440 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence            999998888777664   4567788899999988877754433333344333223343 45566666554

Several sequences in this family are described as being myosin heavy chain-like.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=84.71  E-value=26  Score=30.78  Aligned_cols=107  Identities=22%  Similarity=0.287  Sum_probs=59.5

Q ss_pred             cchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhh
Q 020513           39 EILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKV  118 (325)
Q Consensus        39 e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~  118 (325)
                      +.|++.|..|.-||-.|--....++-+.+++..+       |+.|++-|+-+|=           ....|+.-|..-.+-
T Consensus        20 dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~e-------ie~L~~el~~lt~-----------el~~L~~EL~~l~sE   81 (140)
T PF10473_consen   20 DSLEDHVESLERELEMSQENKECLILDAENSKAE-------IETLEEELEELTS-----------ELNQLELELDTLRSE   81 (140)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence            4455555555556555555544444444443333       3334433333332           223344445444444


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 020513          119 HKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS  163 (325)
Q Consensus       119 q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~  163 (325)
                      -+.-.+.-..|.+-|.+|+.-.-+....|.-++.+..++.+-+.+
T Consensus        82 k~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~  126 (140)
T PF10473_consen   82 KENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKS  126 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555566677777777777777777777777776666665544

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>TIGR00606 rad50 rad50

Probab=84.65  E-value=73  Score=35.63  Aligned_cols=48  Identities=19%  Similarity=0.285  Sum_probs=25.0

Q ss_pred             HHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q 020513          232 EKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMT  281 (325)
Q Consensus       232 ~kme~Ms~qi~eyE~LvkQLKeELreEKlKAKEEAEDLtQEMAELRYQmT  281 (325)
                      ..|....+.|........++++.|.--+  .+.+..++..+..+|.-++.
T Consensus       998 ~~i~~l~kel~~~~~~kr~l~dnL~~~~--~~~~l~el~~eI~~l~~~~~ 1045 (1311)
T TIGR00606       998 EDMRLMRQDIDTQKIQERWLQDNLTLRK--RENELKEVEEELKQHLKEMG 1045 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence            4455555555555566666666665443  23334455555555554444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK01156 chromosome segregation protein; Provisional

Probab=80.45  E-value=81  Score=33.21  Aligned_cols=77  Identities=12%  Similarity=0.069  Sum_probs=30.5

Q ss_pred             HHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 020513           70 EERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIEC  149 (325)
Q Consensus        70 E~eLq~sal~IeKLEEsisS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~  149 (325)
                      ..++...--.|+++...+.++        +.+.-++..++..+-++..-...-...-+.+.+-+.+++-++....+.|..
T Consensus       642 ~~~i~~~~~~i~~l~~~i~~l--------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~  713 (895)
T PRK01156        642 KILIEKLRGKIDNYKKQIAEI--------DSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINE  713 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--------HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            334434444444444444433        333333334444444433333333333333344444444444444443333


Q ss_pred             HHHhh
Q 020513          150 LDKEN  154 (325)
Q Consensus       150 L~ken  154 (325)
                      +..+.
T Consensus       714 l~eel  718 (895)
T PRK01156        714 LSDRI  718 (895)
T ss_pred             HHHHH
Confidence            44333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	325
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 46/299 (15%), Positives = 110/299 (36%), Gaps = 35/299 (11%)

Query: 5    QEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDME----ILQDKVGQLEEELRRSDSECL 60
            +    L  +     E ++ +   +   E +   ++     +Q ++  LEE+L   ++   
Sbjct: 913  EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQ 972

Query: 61   LLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHK 120
             L  E  + + +++     I  +E+  +    +   E + L+  +  L     E ++  K
Sbjct: 973  KLQLEKVTADGKIKKMEDDILIMEDQNN----KLTKERKLLEERVSDLTTNLAEEEEKAK 1028

Query: 121  ENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWME 180
               + K +  S+I ELEVR +  ++  + L+K  ++L+ +             +I E   
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA 1088

Query: 181  KEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQ 240
            +  +K+ ++Q+ ++ LE   +                           N  +KI+ +   
Sbjct: 1089 QLAKKEEELQAALARLEDETSQ------------------------KNNALKKIRELESH 1124

Query: 241  ICEYELLV---KQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQ 296
            I + +  +   K  + +   +K    EE E L  E+ +      +  E         + 
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 59.5 bits (144), Expect = 6e-10
 Identities = 52/289 (17%), Positives = 120/289 (41%), Gaps = 41/289 (14%)

Query: 9    YLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLL---MEE 65
              ++       +   L E +H +E ++   E  +++  QL+ E ++   + L L   +EE
Sbjct: 910  EAEEMRVRLAAKKQELEEILHEMEARI---EEEEERSQQLQAEKKKMQQQMLDLEEQLEE 966

Query: 66   LQSK----EERLRNSALHIKKLEESISS---SALESQCEIESLKIDMIALEQTCVEAKKV 118
             ++     +     +   IKK+E+ I        +   E + L+  +  L     E ++ 
Sbjct: 967  EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK 1026

Query: 119  HKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEW 178
             K   + K +  S+I ELEVR +  ++  + L+K  ++L+ +             +I E 
Sbjct: 1027 AKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL 1086

Query: 179  MEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMS 238
              +  +K+ ++Q+ ++ LE   +                           N  +KI+ + 
Sbjct: 1087 KAQLAKKEEELQAALARLEDETSQ------------------------KNNALKKIRELE 1122

Query: 239  LQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEE 287
              I +    +++  E  +A + KA+++  DL++E+  L+ ++   L+  
Sbjct: 1123 SHISD----LQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTT 1167

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 64/313 (20%), Positives = 128/313 (40%), Gaps = 22/313 (7%)

Query: 6    EIDYLQDQLNARNEEVYSLSEHVHSLELKLVDME----ILQDKVGQLEEELRRSDSECLL 61
            E+    ++L    E        +  LE K   +     +LQ+K+    E    ++   + 
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917

Query: 62   LMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKE 121
            L  + Q  EE L      I++ EE       + Q E + ++  M+ LE+   E +   ++
Sbjct: 918  LAAKKQELEEILHEMEARIEEEEERSQ----QLQAEKKKMQQQMLDLEEQLEEEEAARQK 973

Query: 122  NVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEK 181
               EK   +  IK++E      ++    L KE K L+E++    TN     +K +   + 
Sbjct: 974  LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL 1033

Query: 182  EDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQI 241
            +++ +  I  L   L++            K    L      + G  ++L E+I  +  QI
Sbjct: 1034 KNKHESMISELEVRLKKE----------EKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083

Query: 242  CEYELLVKQLKEELRAEKFKAKEEAEDLAQ---EMAELRYQMTSLLEEECKRRACIEQAS 298
             E +  + + +EEL+A   + ++E         ++ EL   ++ L E+    +A   +A 
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143

Query: 299  LQRIAELETQIEK 311
             Q+  +L  ++E 
Sbjct: 1144 KQK-RDLSEELEA 1155

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.8 bits (119), Expect = 8e-07
 Identities = 55/280 (19%), Positives = 123/280 (43%), Gaps = 26/280 (9%)

Query: 51   ELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQ 110
            ++ R + E     EELQ  +ER + +   +K+LE+           +   L  +   L++
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQ-----------KHTQLCEEKNLLQE 899

Query: 111  TCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRV 170
                  +++ E  + + R+ +  +ELE    + +  IE  ++ +++L+ +    +     
Sbjct: 900  KLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD 959

Query: 171  FCQKIEEWME-----KEDRKQLD--IQSLVSEL----ERNFTVSKETCFCGKVFGALLSK 219
              +++EE        + ++   D  I+ +  ++    ++N  ++KE     +    L + 
Sbjct: 960  LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019

Query: 220  LALVLGPDANLKEKIKGMSLQICEYELLVKQLK---EELRAEKFKAKEEAEDLAQEMAEL 276
            LA       NL +        I E E+ +K+ +   +EL   K K + E+ DL +++AEL
Sbjct: 1020 LAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAEL 1079

Query: 277  RYQMTSLLEEECKRRACIEQASLQRIAELETQIEKGQNKF 316
            + Q+   L+ +  ++    QA+L R+ +  +Q      K 
Sbjct: 1080 QAQIAE-LKAQLAKKEEELQAALARLEDETSQKNNALKKI 1118

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 40/278 (14%), Positives = 102/278 (36%), Gaps = 34/278 (12%)

Query: 38   MEILQDKVGQLEEELRRSDSECLL--LMEELQSKEERLRNSALHIKKLEESISSSALESQ 95
             + ++D    L+  LR          ++ E +S   +        +        + +  Q
Sbjct: 835  YQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQ 894

Query: 96   CEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENK 155
            C    +      L++  +EA+ V +   +    + + I +L+ +  +        +KE K
Sbjct: 895  CCYRRMMAKR-ELKKLKIEARSVERYK-KLHIGLENKIMQLQRKIDE-------QNKEYK 945

Query: 156  ELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGA 215
             L EK+++ E       +K+   +E+    + + ++  + +                  +
Sbjct: 946  SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVL-----------------S 988

Query: 216  LLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAE 275
            L  ++A +       + + K +     +Y+   +QL  EL+ +    K E E+L + + +
Sbjct: 989  LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048

Query: 276  LRYQMTSLLEEECKRRACIEQASLQRIAELETQIEKGQ 313
                    + E  +++   E   L+   +L  +  + Q
Sbjct: 1049 Q----AKEITETMEKKLVEETKQLE--LDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 27/159 (16%), Positives = 64/159 (40%), Gaps = 7/159 (4%)

Query: 32   ELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSA 91
            + +L  ++I    V + ++     +++ + L  ++  + +  ++    +  LE + S+  
Sbjct: 903  KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST-- 960

Query: 92   LESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLD 151
                 E E L+ D+  L  +  EAK      +  +  +  L KEL     + + I E  D
Sbjct: 961  -----ETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWAD 1015

Query: 152  KENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQ 190
            K   E ++ +   +    +   + EE   +   +  +I 
Sbjct: 1016 KYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT 1054

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 34/188 (18%), Positives = 70/188 (37%), Gaps = 14/188 (7%)

Query: 11   QDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKE 70
              +L      V    +    LE K++    LQ K+ +  +E +    +   L     ++ 
Sbjct: 906  LKKLKIEARSVERYKKLHIGLENKIMQ---LQRKIDEQNKEYKSLLEKMNNLEITYSTET 962

Query: 71   ERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMN 130
            E+LR+    ++  EE   ++        E +      L QT  E K + +   + K    
Sbjct: 963  EKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022

Query: 131  SLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRK-QLDI 189
             L+ EL+       E    L  E +EL  ++           + +E+ + +E ++ +LD+
Sbjct: 1023 QLVSELK-------EQNTLLKTEKEELNRRIHDQAKEIT---ETMEKKLVEETKQLELDL 1072

Query: 190  QSLVSELE 197
                   +
Sbjct: 1073 NDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 5/132 (3%)

Query: 10   LQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSK 69
            L+   +   E+   L   V  L +   + +   ++V  L+EE+ +   E      E ++ 
Sbjct: 954  LEITYSTETEK---LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010

Query: 70   EERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARM 129
            EE         ++L   +       + E E L   +    +   E  +  K+ V+E  ++
Sbjct: 1011 EEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETME--KKLVEETKQL 1068

Query: 130  NSLIKELEVRTQ 141
               + +  +R Q
Sbjct: 1069 ELDLNDERLRYQ 1080

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 7e-06
 Identities = 54/357 (15%), Positives = 121/357 (33%), Gaps = 95/357 (26%)

Query: 16  ARNEEVYSLSE-HVHSLELKLVD-----MEILQDKVGQLEEEL-RRSDSECL--LLMEEL 66
             + +V    +  +  L LK  +     +E+LQ  + Q++     RSD      L +  +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 67  QSKEERLRNSALHIKKLEESI-------SSSALES---QCEI-----ESLKIDMIALEQT 111
           Q++  RL    L  K  E  +       ++ A  +    C+I          D ++   T
Sbjct: 231 QAELRRL----LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 112 CVEAKKVHKENVQEKARMNSLIKELEVRTQD-SQEIIEC----LDKENKELKEKLDSYET 166
              +   H   +      + L+K L+ R QD  +E++      L    + +++ L +++ 
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 167 NGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGP 226
              V C K+   +E        +  L     R                 +  +L+ V  P
Sbjct: 347 WKHVNCDKLTTIIES------SLNVLEPAEYR----------------KMFDRLS-VFPP 383

Query: 227 DANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMA----------EL 276
            A++   +           L+   + +           +   +  ++           E 
Sbjct: 384 SAHIPTIL---------LSLIWFDVIK----------SDVMVVVNKLHKYSLVEKQPKES 424

Query: 277 RYQMTSL-LEEECKR-------RACIEQASLQRIAELETQIEKGQNKFVAT--GRHL 323
              + S+ LE + K        R+ ++  ++ +  + +  I    +++  +  G HL
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 33/310 (10%), Positives = 83/310 (26%), Gaps = 101/310 (32%)

Query: 27  HVHSLELKLVDME-----ILQD---------KVGQLEEELRR--SDSECLLLMEELQSKE 70
           H H ++ +  + +     IL               +++  +   S  E   ++   +   
Sbjct: 3   HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS-KDAV 61

Query: 71  ERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMN 130
                    +   +E +    +E     E L+I+   L         +  E  Q      
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVE-----EVLRINYKFL------MSPIKTEQRQPSMMTR 110

Query: 131 SLIKELEVRTQDSQEIIE---CLDKENKELKEKLDSYETNGRVF------CQKIEEWMEK 181
             I++ +    D+Q   +      +   +L++ L        V         K       
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK------- 163

Query: 182 EDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQI 241
                     +  ++  ++ V  +     K+F                       ++L+ 
Sbjct: 164 --------TWVALDVCLSYKV--QCKMDFKIFW----------------------LNLKN 191

Query: 242 CEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQR 301
           C                        E + + + +L YQ+           + I+     R
Sbjct: 192 CN---------------------SPETVLEMLQKLLYQIDPNWTSRSDHSSNIK----LR 226

Query: 302 IAELETQIEK 311
           I  ++ ++ +
Sbjct: 227 IHSIQAELRR 236

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	94.34
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	90.31
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	86.62
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	85.76
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	85.06

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=94.34  E-value=0.021  Score=59.75  Aligned_cols=79  Identities=19%  Similarity=0.179  Sum_probs=30.1

Q ss_pred             hhhhHHHhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhh
Q 020513            7 IDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEES   86 (325)
Q Consensus         7 IDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEs   86 (325)
                      ++-++..+..-...+..+.+.+..|+-++.   .+...+...+.++.....+.-.+..+....+.++....-.++.+++.
T Consensus       866 L~el~~~L~~le~~l~ele~~l~~Le~e~~---~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~  942 (1184)
T 1i84_S          866 LQRTKERQQKAEAELKELEQKHTQLCEEKN---LLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEER  942 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444433222   22223333333333333333333444444444444444444444443


Q ss_pred             hh
Q 020513           87 IS   88 (325)
Q Consensus        87 is   88 (325)
                      +.
T Consensus       943 l~  944 (1184)
T 1i84_S          943 SQ  944 (1184)
T ss_dssp             --
T ss_pred             HH
Confidence            33

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=90.31  E-value=0.38  Score=50.41  Aligned_cols=19  Identities=32%  Similarity=0.246  Sum_probs=7.7

Q ss_pred             HHHhhhhhhhHHHHHhhhh
Q 020513           70 EERLRNSALHIKKLEESIS   88 (325)
Q Consensus        70 E~eLq~sal~IeKLEEsis   88 (325)
                      +.++......+.+|++.+.
T Consensus       912 e~~l~~l~~~~~~Le~~l~  930 (1184)
T 1i84_S          912 EEMRVRLAAKKQELEEILH  930 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444433

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=86.62  E-value=1.5  Score=34.80  Aligned_cols=51  Identities=31%  Similarity=0.372  Sum_probs=36.2

Q ss_pred             hHHHHHHHHHHHHHHHHhhh----HHHHHHHHHH-HHHHHHHHHH-HHHHHHHhhcc
Q 020513          264 EEAEDLAQEMAELRYQMTSL----LEEECKRRAC-IEQASLQRIA-ELETQIEKGQN  314 (325)
Q Consensus       264 EEAEDLtQEMAELRYQmTgl----LEEEcKRRaC-IEQASlQrIa-ELEAQi~ke~~  314 (325)
                      -+||||.|||.+|||.+|.|    +--|-|-+|- -|-|+||+.- .=+|-|++-|.
T Consensus        19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~   75 (81)
T 3qh9_A           19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHS   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence            46889999999999999987    3335666666 6788888743 33555554443

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=85.76  E-value=11  Score=29.58  Aligned_cols=19  Identities=5%  Similarity=0.097  Sum_probs=7.2

Q ss_pred             hhhhhHHHhhhhhhhhhhh
Q 020513            6 EIDYLQDQLNARNEEVYSL   24 (325)
Q Consensus         6 EIDYLqDQLn~Rn~Evn~l   24 (325)
                      +||-+.+++.--..++..+
T Consensus        14 ~~~~~~~~~~~l~~~l~~l   32 (284)
T 1c1g_A           14 DKENALDRADEAEADKKAA   32 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            3344444433333333333

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=85.06  E-value=18  Score=31.17  Aligned_cols=129  Identities=22%  Similarity=0.308  Sum_probs=75.7

Q ss_pred             hHHHhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhc
Q 020513           10 LQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISS   89 (325)
Q Consensus        10 LqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lL~qEle~kE~eLq~sal~IeKLEEsisS   89 (325)
                      |-|.|..-..+....+.-|+.||.       +.++...+..++.--+.++--|+.+|..-...-..+--...+++     
T Consensus        18 LeD~L~~~R~el~~~~~ri~~lE~-------~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie-----   85 (154)
T 2ocy_A           18 LEEQLNKSLKTIASQKAAIENYNQ-------LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN-----   85 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHH-------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            566666666666666666666553       33333333333333333333344444322211111112222222     


Q ss_pred             cccccccchhhhhhhHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 020513           90 SALESQCEIESLKIDMIALEQTCVE-AKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS  163 (325)
Q Consensus        90 ~tLeSQcEIESmKLD~~aLEQ~lfd-A~k~q~et~~ek~~m~~~i~Elq~q~q~Aq~~i~~L~kenkeL~ekl~~  163 (325)
                                   -++-.|=.+||+ |.+.--..-.+.+....-...|+.++.++...++.+..+...|+.-+-.
T Consensus        86 -------------~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~  147 (154)
T 2ocy_A           86 -------------KEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHS  147 (154)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         344456678885 6666656666677777788889999999999999999999999876544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00