Citrus Sinensis ID: 020516

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
MYLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNESLALA
cccccccccccEEEEEEccccHHHHHHcccccEEEEcccccccccHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHcccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEccccccHHHHcccccccccccHHHHHHHHHHHHHHccccEEEcccccHHHHHHHHcccccccccccHHHHHHHHHHccEEEEcccHHHHHHHHHcccEEEEEccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHcccc
ccEEcccccccEEEEEEcccHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEcccccccHHHcccccccccccHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHccccccccHHHHHHHHHHccEEEEcccHHHHHHHHccccEEEEEcccccccccccccccccEEEEEcccccEccccHHHHHHHHHHHHHHHHcc
mylhitrypgVLIDVIASARGKQTFELNKNVRwanvydldddwpepaeytDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDrvsyiypnvnaagAGLLLSETFTAESMNLSERGYNMYEQMVDWlgrpfrsvprhpvpplrVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIesdskasmqsrgdtdsllpIQVWAEIANGlrefrplfviphekeregvedvvgddasivfITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSElkgrlfvpnaeekkctvissrtgklidtpVEAVLNAMQIFNESLALA
mylhitrypgvLIDVIASARGKQTfelnknvrwanvydldddwpepAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKyknagaeqgkyIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKgrlfvpnaeekkctvissrtgklidTPVEAVLNAMQIFNESLALA
MYLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNESLALA
*YLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGI****************LLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFN******
MYLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNESL***
MYLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESD***********DSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNESLALA
MYLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNESLALA
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MYLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDTPVEAVLNAMQIFNESLALA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
255543315 466 conserved hypothetical protein [Ricinus 0.981 0.684 0.811 1e-151
363808214 471 uncharacterized protein LOC100802136 [Gl 0.978 0.675 0.801 1e-148
356523261 467 PREDICTED: uncharacterized protein LOC10 0.978 0.680 0.795 1e-148
388501644 460 unknown [Medicago truncatula] 0.981 0.693 0.780 1e-148
357467927 472 hypothetical protein MTR_4g007080 [Medic 0.981 0.675 0.777 1e-147
297844518 460 hypothetical protein ARALYDRAFT_471797 [ 0.978 0.691 0.786 1e-146
18394307 461 NDH-dependent cyclic electron flow 1 [Ar 0.978 0.689 0.777 1e-145
449436635 466 PREDICTED: uncharacterized protein LOC10 0.981 0.684 0.783 1e-141
341833960 463 hypothetical protein [Pyrus x bretschnei 0.978 0.686 0.745 1e-141
359483160 466 PREDICTED: uncharacterized protein LOC10 0.981 0.684 0.783 1e-141
>gi|255543315|ref|XP_002512720.1| conserved hypothetical protein [Ricinus communis] gi|223547731|gb|EEF49223.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 259/319 (81%), Positives = 286/319 (89%)

Query: 7   RYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLS 66
           RYPGV IDV+AS RGKQT+ELNKNVRWAN YD DDDWPEPAEY D+LG++KNRYYDMVLS
Sbjct: 148 RYPGVQIDVLASPRGKQTYELNKNVRWANDYDPDDDWPEPAEYVDMLGILKNRYYDMVLS 207

Query: 67  TKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMV 126
           TKLAGLGHA+FLFMT+ARDRVSYI+PNVNAAGAGLLLSETFT +  NL+E GY+MY QM+
Sbjct: 208 TKLAGLGHASFLFMTSARDRVSYIHPNVNAAGAGLLLSETFTPDITNLAEGGYHMYHQML 267

Query: 127 DWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQS 186
           DWLGRPFRSVPRH VPPLRVSISR+LKE V  KY+ AGAE+GKYIVIHGIESDSKASMQS
Sbjct: 268 DWLGRPFRSVPRHTVPPLRVSISRKLKEFVEAKYRAAGAEKGKYIVIHGIESDSKASMQS 327

Query: 187 RGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAAL 246
           RGDTDSLLP+QVWAEIA  +R F+P+FVIPHEKERE VE++VGDD SIV ITTPGQLAAL
Sbjct: 328 RGDTDSLLPLQVWAEIAKDIRAFKPVFVIPHEKERENVEEIVGDDTSIVMITTPGQLAAL 387

Query: 247 INDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTGKLIDT 306
           INDSAGVIATNTAAIQLANAREKPSIALF S  KGRLF+PNAEEKKC+++SS+TGKL D 
Sbjct: 388 INDSAGVIATNTAAIQLANAREKPSIALFGSIEKGRLFIPNAEEKKCSIVSSKTGKLKDI 447

Query: 307 PVEAVLNAMQIFNESLALA 325
            V  V  AMQI + SLALA
Sbjct: 448 DVGDVKQAMQILDLSLALA 466

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|363808214|ref|NP_001242232.1| uncharacterized protein LOC100802136 [Glycine max] gi|255635425|gb|ACU18065.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356523261|ref|XP_003530259.1| PREDICTED: uncharacterized protein LOC100803710 [Glycine max] Back     alignment and taxonomy information
>gi|388501644|gb|AFK38888.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357467927|ref|XP_003604248.1| hypothetical protein MTR_4g007080 [Medicago truncatula] gi|355505303|gb|AES86445.1| hypothetical protein MTR_4g007080 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297844518|ref|XP_002890140.1| hypothetical protein ARALYDRAFT_471797 [Arabidopsis lyrata subsp. lyrata] gi|297335982|gb|EFH66399.1| hypothetical protein ARALYDRAFT_471797 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18394307|ref|NP_563986.1| NDH-dependent cyclic electron flow 1 [Arabidopsis thaliana] gi|6587804|gb|AAF18495.1|AC010924_8 ESTs gb|T43280, gb|AA395195 come from this gene [Arabidopsis thaliana] gi|16323198|gb|AAL15333.1| At1g15980/T24D18_8 [Arabidopsis thaliana] gi|21537186|gb|AAM61527.1| unknown [Arabidopsis thaliana] gi|21700921|gb|AAM70584.1| At1g15980/T24D18_8 [Arabidopsis thaliana] gi|332191271|gb|AEE29392.1| NDH-dependent cyclic electron flow 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449436635|ref|XP_004136098.1| PREDICTED: uncharacterized protein LOC101205787 [Cucumis sativus] Back     alignment and taxonomy information
>gi|341833960|gb|AEK94315.1| hypothetical protein [Pyrus x bretschneideri] Back     alignment and taxonomy information
>gi|359483160|ref|XP_002264393.2| PREDICTED: uncharacterized protein LOC100241596 [Vitis vinifera] gi|298204672|emb|CBI25170.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
TAIR|locus:2200452461 PnsB1 "Photosynthetic NDH subc 0.978 0.689 0.777 1.5e-131
TAIR|locus:2200452 PnsB1 "Photosynthetic NDH subcomplex B 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1290 (459.2 bits), Expect = 1.5e-131, P = 1.5e-131
 Identities = 248/319 (77%), Positives = 280/319 (87%)

Query:     7 RYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLS 66
             RYPGV +D++ + RGKQT+ELNKNVRWANVYD DD WPEPAEYTD++G++K RYYDMVLS
Sbjct:   142 RYPGVQVDILTTERGKQTYELNKNVRWANVYDPDDHWPEPAEYTDMIGLLKGRYYDMVLS 201

Query:    67 TKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMV 126
             TKLAGLGHAAFLFMTTARDRVSYIYPNVN+AGAGL+LSETFTAE+ NLSE GY+MY QM 
Sbjct:   202 TKLAGLGHAAFLFMTTARDRVSYIYPNVNSAGAGLMLSETFTAENTNLSELGYSMYTQME 261

Query:   127 DWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQS 186
             DWLGRPFRSVPR P+ PLRVSISR++KEVVA KY+NAGA  GK+IVIHGIESDSKASMQS
Sbjct:   262 DWLGRPFRSVPRTPLLPLRVSISRKVKEVVAAKYRNAGAVTGKFIVIHGIESDSKASMQS 321

Query:   187 RGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLAAL 246
             +GD DSLL ++ WA+I  G+R F+P+FVIPHEKERE VED VGDD SIVFITTPGQLAAL
Sbjct:   322 KGDADSLLSLEKWAKIIKGVRGFKPVFVIPHEKERENVEDFVGDDTSIVFITTPGQLAAL 381

Query:   247 INDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKK-CTVISSRTGKLID 305
             INDSAGVIATNTAAIQLANAR+KP I LFSSE KG+LFVP AEEK  C +I+S+TGKL D
Sbjct:   382 INDSAGVIATNTAAIQLANARDKPCIGLFSSEEKGKLFVPYAEEKSNCVIIASKTGKLAD 441

Query:   306 TPVEAVLNAMQIFNESLAL 324
               +  V NAMQ+F  SLAL
Sbjct:   442 IDIGTVKNAMQVFEGSLAL 460


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      325       325   0.00087  116 3  11 22  0.40    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  206 KB (2116 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.27u 0.19s 25.46t   Elapsed:  00:00:01
  Total cpu time:  25.27u 0.19s 25.46t   Elapsed:  00:00:01
  Start:  Thu May  9 19:05:20 2013   End:  Thu May  9 19:05:21 2013
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009773 "photosynthetic electron transport in photosystem I" evidence=IMP
GO:0010598 "NAD(P)H dehydrogenase complex (plastoquinone)" evidence=IMP;IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0015979 "photosynthesis" evidence=RCA
GO:0016117 "carotenoid biosynthetic process" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.1__1751__AT1G15980.1
annotation not avaliable (460 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh2_kg.2__609__AT1G64770.1
annotation not avaliable (350 aa)
   •  • 0.694
fgenesh2_kg.8__1751__AT5G58260.1
annotation not avaliable (209 aa)
   •  • 0.657
scaffold_201968.1
annotation not avaliable (191 aa)
   •  • 0.641
scaffold_301898.1
annotation not avaliable (204 aa)
   •  • 0.572
fgenesh2_kg.2__1754__AT1G74880.1
annotation not avaliable (158 aa)
   •  • 0.554
scaffold_102013.1
annotation not avaliable (226 aa)
   •  • 0.501
fgenesh2_kg.1__3345__AT1G32080.1
annotation not avaliable (506 aa)
   •    0.501
scaffold_301854.1
annotation not avaliable (268 aa)
   •  • 0.496
fgenesh2_kg.5__2683__AT3G61870.1
annotation not avaliable (271 aa)
   •    0.491
fgenesh2_kg.6__656__AT5G07020.1
annotation not avaliable (235 aa)
   •    0.489

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
COG0859334 COG0859, RfaF, ADP-heptose:LPS heptosyltransferase 2e-14
cd03789279 cd03789, GT1_LPS_heptosyltransferase, Lipopolysacc 0.003
>gnl|CDD|223928 COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information 
 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 66/330 (20%), Positives = 114/330 (34%), Gaps = 38/330 (11%)

Query: 7   RYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLS 66
            YP   IDV+         +LN  +    + D         E   +L  ++   YD V+ 
Sbjct: 28  AYPNAKIDVLVPKGFAPILKLNPEIDKVIIIDKKKKGLGLKERLALLRTLRKERYDAVID 87

Query: 67  TKLAGLGHAAFL-FMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQM 125
             L GL  +A L  +     R+ +   +       LLL++ +        +     Y  +
Sbjct: 88  --LQGLLKSALLALLLGIPFRIGFDKKSA----RELLLNKFYPRLDKPEGQHVVERYLAL 141

Query: 126 VDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQ 185
           ++ LG      P+    PL             E  KN       YIVI+       +   
Sbjct: 142 LEDLGLYPPPEPQL-DFPLPRPP--------IELAKNLAKFDRPYIVINP----GASRGS 188

Query: 186 SRGDTDSLLPIQVWAEIANGLRE-FRPLFVIPHEKEREGVEDVVGDDASIVFITTPG--- 241
           ++       P++ +AE+A  L      + +     E E  E++     + V +       
Sbjct: 189 AKR-----WPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLE 243

Query: 242 QLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSRTG 301
           +LAALI  +  VI  ++  + LA A   P+IAL+          P   + K   IS    
Sbjct: 244 ELAALIAGADLVIGNDSGPMHLAAALGTPTIALYGPTSPAFTPPP---DPKLPGISGNLD 300

Query: 302 ----KLIDTPVEAV--LNAMQIFNESLALA 325
               K      E +  +   ++   + AL 
Sbjct: 301 CSPCKPSGGHHECLKDIEPEKVLEAAEALL 330

Length = 334
>gnl|CDD|99964 cd03789, GT1_LPS_heptosyltransferase, Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 325
PRK10422352 lipopolysaccharide core biosynthesis protein; Prov 100.0
TIGR02201344 heptsyl_trn_III lipopolysaccharide heptosyltransfe 100.0
PRK10916348 ADP-heptose:LPS heptosyltransferase II; Provisiona 100.0
TIGR02195334 heptsyl_trn_II lipopolysaccharide heptosyltransfer 100.0
PRK10964322 ADP-heptose:LPS heptosyl transferase I; Provisiona 100.0
TIGR02193319 heptsyl_trn_I lipopolysaccharide heptosyltransfera 100.0
COG0859334 RfaF ADP-heptose:LPS heptosyltransferase [Cell env 100.0
cd03789279 GT1_LPS_heptosyltransferase Lipopolysaccharide hep 100.0
PF01075247 Glyco_transf_9: Glycosyltransferase family 9 (hept 100.0
TIGR03568365 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, 99.15
PRK10017426 colanic acid biosynthesis protein; Provisional 98.45
PRK00025380 lpxB lipid-A-disaccharide synthase; Reviewed 98.14
PF04007335 DUF354: Protein of unknown function (DUF354); Inte 97.91
PF02684373 LpxB: Lipid-A-disaccharide synthetase; InterPro: I 97.76
cd03786363 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th 97.65
TIGR03590279 PseG pseudaminic acid biosynthesis-associated prot 97.57
cd03807365 GT1_WbnK_like This family is most closely related 97.56
TIGR03492396 conserved hypothetical protein. This protein famil 97.52
PRK01021608 lpxB lipid-A-disaccharide synthase; Reviewed 97.5
PRK13609380 diacylglycerol glucosyltransferase; Provisional 97.48
PRK13608391 diacylglycerol glucosyltransferase; Provisional 97.28
PRK05749425 3-deoxy-D-manno-octulosonic-acid transferase; Revi 97.24
PRK12446352 undecaprenyldiphospho-muramoylpentapeptide beta-N- 97.16
cd04951360 GT1_WbdM_like This family is most closely related 97.15
cd03785350 GT1_MurG MurG is an N-acetylglucosaminyltransferas 97.11
cd03819355 GT1_WavL_like This family is most closely related 97.07
COG0763381 LpxB Lipid A disaccharide synthetase [Cell envelop 97.01
TIGR03088374 stp2 sugar transferase, PEP-CTERM/EpsH1 system ass 96.99
COG0707357 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami 96.89
PLN02605382 monogalactosyldiacylglycerol synthase 96.87
TIGR00236365 wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras 96.87
cd03811353 GT1_WabH_like This family is most closely related 96.52
COG1817346 Uncharacterized protein conserved in archaea [Func 96.42
TIGR00215385 lpxB lipid-A-disaccharide synthase. Lipid-A precur 96.33
cd03820348 GT1_amsD_like This family is most closely related 96.33
PRK00726357 murG undecaprenyldiphospho-muramoylpentapeptide be 96.2
cd03812358 GT1_CapH_like This family is most closely related 96.13
PF02350346 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; 96.06
cd03798377 GT1_wlbH_like This family is most closely related 96.03
cd03808359 GT1_cap1E_like This family is most closely related 95.89
PF13528318 Glyco_trans_1_3: Glycosyl transferase family 1 95.54
COG2327385 WcaK Polysaccharide pyruvyl transferase family pro 94.72
TIGR03609298 S_layer_CsaB polysaccharide pyruvyl transferase Cs 94.61
TIGR01426392 MGT glycosyltransferase, MGT family. This model de 94.53
PRK15490578 Vi polysaccharide biosynthesis protein TviE; Provi 94.48
TIGR00661321 MJ1255 conserved hypothetical protein. This model 94.37
TIGR01133348 murG undecaprenyldiphospho-muramoylpentapeptide be 94.2
COG0381383 WecB UDP-N-acetylglucosamine 2-epimerase [Cell env 94.12
cd03795357 GT1_like_4 This family is most closely related to 93.88
cd03817374 GT1_UGDG_like This family is most closely related 93.84
cd04962371 GT1_like_5 This family is most closely related to 93.68
PF06258311 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP 93.67
COG3660329 Predicted nucleoside-diphosphate-sugar epimerase [ 93.44
cd03801374 GT1_YqgM_like This family is most closely related 93.36
cd03784401 GT1_Gtf_like This family includes the Gtfs, a grou 92.93
PRK15179694 Vi polysaccharide biosynthesis protein TviE; Provi 92.88
PRK14089347 ipid-A-disaccharide synthase; Provisional 92.83
cd03794394 GT1_wbuB_like This family is most closely related 92.43
PF00534172 Glycos_transf_1: Glycosyl transferases group 1; In 91.68
cd03799355 GT1_amsK_like This is a family of GT1 glycosyltran 91.38
PRK10307412 putative glycosyl transferase; Provisional 91.33
PRK15484380 lipopolysaccharide 1,2-N-acetylglucosaminetransfer 90.88
cd03814364 GT1_like_2 This family is most closely related to 90.84
cd01635229 Glycosyltransferase_GTB_type Glycosyltransferases 90.84
cd03823359 GT1_ExpE7_like This family is most closely related 90.79
COG3980318 spsG Spore coat polysaccharide biosynthesis protei 90.78
PF04101167 Glyco_tran_28_C: Glycosyltransferase family 28 C-t 90.38
cd05844367 GT1_like_7 Glycosyltransferases catalyze the trans 89.96
TIGR02095473 glgA glycogen/starch synthases, ADP-glucose type. 89.82
PF05159269 Capsule_synth: Capsule polysaccharide biosynthesis 89.78
cd03825365 GT1_wcfI_like This family is most closely related 89.66
TIGR03449405 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino 89.53
PF13692135 Glyco_trans_1_4: Glycosyl transferases group 1; PD 89.43
PRK15427406 colanic acid biosynthesis glycosyltransferase WcaL 88.66
cd04955363 GT1_like_6 This family is most closely related to 88.59
cd03800398 GT1_Sucrose_synthase This family is most closely r 88.48
PF04230286 PS_pyruv_trans: Polysaccharide pyruvyl transferase 88.4
TIGR02149388 glgA_Coryne glycogen synthase, Corynebacterium fam 88.02
cd03822366 GT1_ecORF704_like This family is most closely rela 87.88
cd03796398 GT1_PIG-A_like This family is most closely related 87.15
cd03804351 GT1_wbaZ_like This family is most closely related 86.34
cd03821375 GT1_Bme6_like This family is most closely related 86.26
cd03792372 GT1_Trehalose_phosphorylase Trehalose phosphorylas 85.11
PLN02871465 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase 84.68
COG1105310 FruK Fructose-1-phosphate kinase and related fruct 84.52
TIGR02918500 accessory Sec system glycosylation protein GtfA. M 83.33
PRK00654466 glgA glycogen synthase; Provisional 83.23
COG1519419 KdtA 3-deoxy-D-manno-octulosonic-acid transferase 82.4
PF13477139 Glyco_trans_4_2: Glycosyl transferase 4-like 81.36
cd03791476 GT1_Glycogen_synthase_DULL1_like This family is mo 80.76
cd03818396 GT1_ExpC_like This family is most closely related 80.7
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2e-53  Score=397.30  Aligned_cols=297  Identities=15%  Similarity=0.116  Sum_probs=232.0

Q ss_pred             ChhHhhhCCCCEEEEEeccCchhhhhhCCCCceEEEecCCCC--CCCchhHHHHHHHHHhcCCcEEEEecCCchHHHHHH
Q 020516            1 MYLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDD--WPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFL   78 (325)
Q Consensus         1 ~~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~Vd~v~~~~~~~~--~~~~~~~~~l~~~Lr~~~yDl~i~~~~~~~~~~~~~   78 (325)
                      +++||++||+++|||++.+.++++++++|+||+|+.++++..  +..+..+++++++||+++||++||++.+ +++++++
T Consensus        26 l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~id~vi~~~~~~~~~~~~~~~~~~l~~~lr~~~yD~vidl~~~-~~s~ll~  104 (352)
T PRK10422         26 ISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNKKAGASEKIKNFFSLIKVLRANKYDLIVNLTDQ-WMVALLV  104 (352)
T ss_pred             HHHHHHHCCCCeEEEEeccChHHHhccCCCceEEEEeccccccHHHHHHHHHHHHHHHhhCCCCEEEEcccc-hHHHHHH
Confidence            478999999999999999999999999999999999997642  1123456788899999999999999988 8999999


Q ss_pred             HHhCCCceeecccCCcccCCcccccceeccCCCcchhhhHHHHHHHHHHHcCCCCCCCCCCCCCCCeeecCHHHHHHHHH
Q 020516           79 FMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAE  158 (325)
Q Consensus        79 ~~~~a~~rig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (325)
                      +++|++.||||............++++.++.. .   .|.+++|+.+++.+|++      ...+.+.+.+++++.+..+.
T Consensus       105 ~l~~a~~rig~~~~~~~~~~~~~~~~~~~~~~-~---~h~~~~~~~ll~~lg~~------~~~~~~~l~~~~~~~~~~~~  174 (352)
T PRK10422        105 RLLNARVKISQDYHHRQSAFWRKSFTHLVPLQ-G---GHIVESNLSVLTPLGLS------SLVKETTMSYRPESWKRMRR  174 (352)
T ss_pred             HHhCCCeEEeeccccccchhHHHHhcccCCCC-C---cchHHhhHhHHhhcCCC------CCCCcceeecCHHHHHHHHH
Confidence            99999999999732211111223566665422 2   58899999999999982      22234566677776666555


Q ss_pred             HHHHcCCCCCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCCch--HHHHhHHccCC---
Q 020516          159 KYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKER--EGVEDVVGDDA---  232 (325)
Q Consensus       159 ~~~~~~~~~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~e~--~~~~~i~~~~~---  232 (325)
                      .+...+. .+++|+||||+++.          .|+||.|+|++|++.|.+++ .++|+|||+|+  +.++++.+...   
T Consensus       175 ~~~~~~~-~~~~i~i~pga~~~----------~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~  243 (352)
T PRK10422        175 QLDHLGV-TQNYVVIQPTARQI----------FKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPP  243 (352)
T ss_pred             HHHhcCC-CCCeEEEecCCCcc----------ccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCc
Confidence            5554444 46899999999874          48899999999999998766 89999998654  44577765422   


Q ss_pred             --CcccccChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCCCCCccccCCCCCCceeeeeC------------
Q 020516          233 --SIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISS------------  298 (325)
Q Consensus       233 --~~~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~~~~~~~~~------------  298 (325)
                        ++.+.+++.|++++|++|+++|||||||||||+|+|+|||+|||||+|.+|+| + ++ ++.++..            
T Consensus       244 ~~~l~g~~sL~el~ali~~a~l~v~nDSGp~HlAaA~g~P~v~lfGpt~p~~~~P-~-~~-~~~v~~~~~~~~~pc~~~~  320 (352)
T PRK10422        244 VTALAGKTTFPELGALIDHAQLFIGVDSAPAHIAAAVNTPLICLFGATDHIFWRP-W-SD-NMIQFWAGDYQEMPTRDEL  320 (352)
T ss_pred             cccccCCCCHHHHHHHHHhCCEEEecCCHHHHHHHHcCCCEEEEECCCCccccCC-C-CC-CeeEEECCCcccCcCcccC
Confidence              23334567999999999999999999999999999999999999999999999 7 33 3333211            


Q ss_pred             --CCCCCCCCCHHHHHHHHHHHHHhh
Q 020516          299 --RTGKLIDTPVEAVLNAMQIFNESL  322 (325)
Q Consensus       299 --~~~~m~~I~~~~V~~~~~~~~~~~  322 (325)
                        ...||.+|+||+|++++.++...+
T Consensus       321 ~~~~~Cm~~I~~~~V~~~~~~ll~~~  346 (352)
T PRK10422        321 DRNEKYLSVIPAADVIAAVDKLLPSS  346 (352)
T ss_pred             CccccHhhcCCHHHHHHHHHHHHhcc
Confidence              125899999999999999987654

>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative Back     alignment and domain information
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional Back     alignment and domain information
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II Back     alignment and domain information
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional Back     alignment and domain information
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I Back     alignment and domain information
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS) Back     alignment and domain information
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing Back     alignment and domain information
>PRK10017 colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed Back     alignment and domain information
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length Back     alignment and domain information
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc) Back     alignment and domain information
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG Back     alignment and domain information
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR03492 conserved hypothetical protein Back     alignment and domain information
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed Back     alignment and domain information
>PRK13609 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>PRK13608 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed Back     alignment and domain information
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed Back     alignment and domain information
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli Back     alignment and domain information
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis Back     alignment and domain information
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated Back     alignment and domain information
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02605 monogalactosyldiacylglycerol synthase Back     alignment and domain information
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase Back     alignment and domain information
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>COG1817 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>TIGR00215 lpxB lipid-A-disaccharide synthase Back     alignment and domain information
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional Back     alignment and domain information
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5 Back     alignment and domain information
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 Back     alignment and domain information
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB Back     alignment and domain information
>TIGR01426 MGT glycosyltransferase, MGT family Back     alignment and domain information
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>TIGR00661 MJ1255 conserved hypothetical protein Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins Back     alignment and domain information
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known Back     alignment and domain information
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>PRK14089 ipid-A-disaccharide synthase; Provisional Back     alignment and domain information
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria Back     alignment and domain information
>PRK10307 putative glycosyl transferase; Provisional Back     alignment and domain information
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional Back     alignment and domain information
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type Back     alignment and domain information
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT Back     alignment and domain information
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase Back     alignment and domain information
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A Back     alignment and domain information
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional Back     alignment and domain information
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis Back     alignment and domain information
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family Back     alignment and domain information
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose Back     alignment and domain information
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase Back     alignment and domain information
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02918 accessory Sec system glycosylation protein GtfA Back     alignment and domain information
>PRK00654 glgA glycogen synthase; Provisional Back     alignment and domain information
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like Back     alignment and domain information
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
2gt1_A326 Lipopolysaccharide heptosyltransferase-1; GT-B fol 6e-17
3tov_A349 Glycosyl transferase family 9; structural genomics 1e-12
1psw_A348 ADP-heptose LPS heptosyltransferase II; structural 7e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A* Length = 326 Back     alignment and structure
 Score = 79.2 bits (196), Expect = 6e-17
 Identities = 45/327 (13%), Positives = 93/327 (28%), Gaps = 53/327 (16%)

Query: 7   RYPGVLIDVIASARGKQTFELNKNV---------RWANVYDLDDDWPEPAEYTDILGVMK 57
             PG+  D +      Q    +  V         RW   +         AE       ++
Sbjct: 27  AIPGIKFDWVVEEGFAQIPSWHAAVERVIPVAIRRWRKAWFSAPIK---AERKAFREALQ 83

Query: 58  NRYYDMVLSTKLAGLGHAAFL-FMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSE 116
            + YD V+     GL  +A L        +    +       A L  +            
Sbjct: 84  AKNYDAVID--AQGLVKSAALVTRLAHGVKHGMDWQTAREPLASLFYNRKHHIA------ 135

Query: 117 RGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGI 176
           +  +  E+  +   +      +                +      N   + G+Y V    
Sbjct: 136 KQQHAVERTRELFAKSLG-YSKPQTQGDY--------AIAQHFLTNLPTDAGEYAVFLHA 186

Query: 177 ES-DSKASMQSRGDTDSLLPIQVWAEIANGLRE--FRPLFVIPHEKEREGVEDVVGDDAS 233
            + D K             P + W E+   L +   R         E E  + +    A 
Sbjct: 187 TTRDDK-----------HWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAY 235

Query: 234 IVFI--TTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALF--SSELKGRLFVPNAE 289
           +  +   +   +A ++  +  V++ +T    L  A ++P+I ++  +      L     +
Sbjct: 236 VEVLPKMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNITVYGPTDP---GLIGGYGK 292

Query: 290 EKKCTVISSRTGKLIDTPVEAVLNAMQ 316
                V  +   +L      AV   ++
Sbjct: 293 --NQMVCRAPGNELSQLTANAVKQFIE 317
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula} Length = 349 Back     alignment and structure
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7 Length = 348 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
3tov_A349 Glycosyl transferase family 9; structural genomics 100.0
2gt1_A326 Lipopolysaccharide heptosyltransferase-1; GT-B fol 100.0
1psw_A348 ADP-heptose LPS heptosyltransferase II; structural 100.0
3okp_A394 GDP-mannose-dependent alpha-(1-6)-phosphatidylino 97.83
3otg_A412 CALG1; calicheamicin, TDP, structural genomics, PS 97.81
4hwg_A385 UDP-N-acetylglucosamine 2-epimerase; ssgcid, struc 97.76
3s2u_A365 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape 97.51
4fzr_A398 SSFS6; structural genomics, PSI-biology, protein s 97.19
1vgv_A384 UDP-N-acetylglucosamine 2-epimerase; structural ge 96.99
3dzc_A396 UDP-N-acetylglucosamine 2-epimerase; structural ge 96.98
3oy2_A413 Glycosyltransferase B736L; rossmann fold, GDP-mann 96.93
2bfw_A200 GLGA glycogen synthase; glycosyltransferase family 96.67
2jjm_A394 Glycosyl transferase, group 1 family protein; anth 95.83
2o6l_A170 UDP-glucuronosyltransferase 2B7; drug metabolism, 95.57
3hbm_A282 UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter je 95.38
1f0k_A364 MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe 95.29
3tsa_A391 SPNG, NDP-rhamnosyltransferase; glycosyltransferas 95.12
3ia7_A402 CALG4; glycosysltransferase, calicheamicin, enediy 94.98
2f9f_A177 First mannosyl transferase (WBAZ-1); alpha-beta pr 94.9
2p6p_A384 Glycosyl transferase; X-RAY-diffraction,urdamycina 94.83
3c48_A438 Predicted glycosyltransferases; retaining glycosyl 94.73
3fro_A439 GLGA glycogen synthase; glycosyltransferase family 94.66
3rsc_A415 CALG2; TDP, enediyne, structural genomics, PSI-2, 94.65
3oti_A398 CALG3; calicheamicin, TDP, structural genomics, PS 94.57
2iw1_A374 Lipopolysaccharide core biosynthesis protein RFAG; 94.45
3qhp_A166 Type 1 capsular polysaccharide biosynthesis prote 94.24
2iya_A424 OLEI, oleandomycin glycosyltransferase; carbohydra 94.21
3ot5_A403 UDP-N-acetylglucosamine 2-epimerase; structural ge 94.1
2x6q_A416 Trehalose-synthase TRET; biosynthetic protein; 2.2 93.99
1v4v_A376 UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, t 93.95
3beo_A375 UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, a 93.72
2vsy_A568 XCC0866; transferase, glycosyl transferase, GT-B, 93.62
3h4t_A404 Glycosyltransferase GTFA, glycosyltransferase; van 93.61
2iyf_A430 OLED, oleandomycin glycosyltransferase; antibiotic 93.21
2gek_A406 Phosphatidylinositol mannosyltransferase (PIMA); G 91.89
3hbf_A454 Flavonoid 3-O-glucosyltransferase; glycosyltransfe 91.2
4fyk_A152 Deoxyribonucleoside 5'-monophosphate N-glycosidas; 90.18
2iuy_A342 Avigt4, glycosyltransferase; antibiotics, family G 90.17
1rrv_A416 Glycosyltransferase GTFD; GT-B, glycosyltransferas 90.11
2yjn_A441 ERYCIII, glycosyltransferase; transferase, cytochr 90.05
1rzu_A485 Glycogen synthase 1; glycosyl-transferase, GT-B fo 89.58
1iir_A415 Glycosyltransferase GTFB; rossmann fold; 1.80A {Am 89.4
2qzs_A485 Glycogen synthase; glycosyl-transferase, GT-B fold 89.28
4amg_A400 Snogd; transferase, polyketide biosynthesis, GT1 f 89.12
2f62_A161 Nucleoside 2-deoxyribosyltransferase; SGPP, struct 88.0
2c1x_A456 UDP-glucose flavonoid 3-O glycosyltransferase; WIN 84.72
1f8y_A157 Nucleoside 2-deoxyribosyltransferase; active site, 82.74
3ehd_A162 Uncharacterized conserved protein; PSI,MCSG,PF0501 81.78
2khz_A165 C-MYC-responsive protein RCL; flexible loop, nucle 81.7
2jzc_A224 UDP-N-acetylglucosamine transferase subunit ALG13; 81.14
2xci_A374 KDO-transferase, 3-deoxy-D-manno-2-octulosonic aci 80.91
2vch_A480 Hydroquinone glucosyltransferase; glycosyltransfer 80.11
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula} Back     alignment and structure
Probab=100.00  E-value=8.1e-54  Score=398.12  Aligned_cols=295  Identities=14%  Similarity=0.108  Sum_probs=245.4

Q ss_pred             ChhHhhhCCCCEEEEEeccCchhhhhhCCCCceEEEecCCCCCCCchhHHHHHHHHHhcCC-cEEEEecCCchHHHHHHH
Q 020516            1 MYLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYY-DMVLSTKLAGLGHAAFLF   79 (325)
Q Consensus         1 ~~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~Vd~v~~~~~~~~~~~~~~~~~l~~~Lr~~~y-Dl~i~~~~~~~~~~~~~~   79 (325)
                      +++||++||+++|+|++.+.++++++.+|+||+|++++++...+++..+++++++||+++| |++|+++.+ .+++++++
T Consensus        29 l~~L~~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~~~~~~~~~~l~~~Lr~~~y~D~vidl~~~-~rs~~l~~  107 (349)
T 3tov_A           29 LEVLRKAAPHSHITYVIDEKLQQVMEYNPNIDELIVVDKKGRHNSISGLNEVAREINAKGKTDIVINLHPN-ERTSYLAW  107 (349)
T ss_dssp             HHHHHHHCTTSEEEEEEEGGGGGGTSSCTTCSEEEEECCSSHHHHHHHHHHHHHHHHHHCCCCEEEECCCS-HHHHHHHH
T ss_pred             HHHHHHHCCCCEEEEEECcchhHHHhcCCCccEEEEeCcccccccHHHHHHHHHHHhhCCCCeEEEECCCC-hHHHHHHH
Confidence            3689999999999999999999999999999999999976432245567788999999999 999999998 99999999


Q ss_pred             HhCCCceeecccCCcccCCcccccceeccCCCcchhhhHHHHHHHHHHHcCCCCCCCCCCCCCCCeeecCHHHHHHHHHH
Q 020516           80 MTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEK  159 (325)
Q Consensus        80 ~~~a~~rig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (325)
                      ++|++.|+||.     +...++++++.++.+..  ..|.+++|+++++.+|++.     .....+.+.+++++.+.++++
T Consensus       108 ~~~a~~riG~~-----~~~~~~~~~~~~~~~~~--~~h~v~r~~~ll~~lg~~~-----~~~~~~~l~~~~~~~~~~~~~  175 (349)
T 3tov_A          108 KIHAPITTGMS-----HFLFRPFMTKYTRLDRK--TRHAADMYINVLEQLGVTD-----TSNSGLHIEICEEWRCQAQEF  175 (349)
T ss_dssp             HHCCSEEEECC-----CTTTGGGCSEECCCCTT--TSCHHHHHHHHHHHTTCCC-----CCCCCCCCCCCHHHHHHHHHH
T ss_pred             HhCCCeEEecC-----CCCccccccccccCCCC--CccHHHHHHHHHHHhCCCc-----cCCCceeeeCCHHHHHHHHHH
Confidence            99999999998     43445678887765432  2689999999999999831     122345677888888888888


Q ss_pred             HHHcCCC-CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCCchHHHHhHHccCCC----
Q 020516          160 YKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDAS----  233 (325)
Q Consensus       160 ~~~~~~~-~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~~~----  233 (325)
                      +.+.|+. .+++|+|+||+++.          .|+||.|+|++|++.|.+++ .++++|+|+|++.++++.+..+.    
T Consensus       176 l~~~g~~~~~~~i~i~pga~~~----------~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~~~~~~~  245 (349)
T 3tov_A          176 YSSHGLTDTDILIGFNIGSAVP----------EKRWPAERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQMETKPIV  245 (349)
T ss_dssp             HHHTTCCTTCCEEEEECCCSSG----------GGCCCHHHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTCSSCCEE
T ss_pred             HHHcCCCCCCCEEEEeCCCCCc----------cCCCCHHHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhcccccEE
Confidence            8887776 46899999999875          38899999999999998776 88999999999999998765532    


Q ss_pred             cccccChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCCCCCccccCCCCCCceeeee--------------C-
Q 020516          234 IVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVIS--------------S-  298 (325)
Q Consensus       234 ~~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~~~~~~~~--------------~-  298 (325)
                      +.+.++..|++++|++||++||||||+||||+|+|+|+|+|||+|+|.+|+| + ++ ++.+++              + 
T Consensus       246 l~g~~sl~e~~ali~~a~~~i~~DsG~~HlAaa~g~P~v~lfg~t~p~~~~P-~-~~-~~~vl~~~~~C~C~~~~~~~C~  322 (349)
T 3tov_A          246 ATGKFQLGPLAAAMNRCNLLITNDSGPMHVGISQGVPIVALYGPSNPFFYGP-Y-QA-HAIVLETMDSYEIGKSMKKIIK  322 (349)
T ss_dssp             CTTCCCHHHHHHHHHTCSEEEEESSHHHHHHHTTTCCEEEECSSCCHHHHSC-T-TC-SEEEECHHHHHHHHHHTTCCCC
T ss_pred             eeCCCCHHHHHHHHHhCCEEEECCCCHHHHHHhcCCCEEEEECCCCccccCC-C-CC-CeEEEeCCCCcCccCCccCCCC
Confidence            2223566899999999999999999999999999999999999999999888 7 44 343331              1 


Q ss_pred             --CCCCCCCCCHHHHHHHHHHHHHh
Q 020516          299 --RTGKLIDTPVEAVLNAMQIFNES  321 (325)
Q Consensus       299 --~~~~m~~I~~~~V~~~~~~~~~~  321 (325)
                        ...||.+|+||+|++++.++...
T Consensus       323 ~~~~~Cm~~I~~~~V~~a~~~lL~~  347 (349)
T 3tov_A          323 EGNYKGLSVISEEQVIKAAETLLLE  347 (349)
T ss_dssp             GGGCSTTTTSCHHHHHHHHHHHHHH
T ss_pred             CCccchhhcCCHHHHHHHHHHHHhh
Confidence              13699999999999999998653
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A* Back     alignment and structure
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7 Back     alignment and structure
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii} Back     alignment and structure
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A* Back     alignment and structure
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae} Back     alignment and structure
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* Back     alignment and structure
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 Back     alignment and structure
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Back     alignment and structure
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} Back     alignment and structure
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A* Back     alignment and structure
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* Back     alignment and structure
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8 Back     alignment and structure
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} Back     alignment and structure
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Back     alignment and structure
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Back     alignment and structure
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori} Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes} Back     alignment and structure
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Back     alignment and structure
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3 Back     alignment and structure
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* Back     alignment and structure
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* Back     alignment and structure
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A* Back     alignment and structure
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A* Back     alignment and structure
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Back     alignment and structure
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Back     alignment and structure
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Back     alignment and structure
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Back     alignment and structure
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* Back     alignment and structure
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A* Back     alignment and structure
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A* Back     alignment and structure
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A* Back     alignment and structure
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis} Back     alignment and structure
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A* Back     alignment and structure
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A Back     alignment and structure
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A* Back     alignment and structure
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 325
d1pswa_348 c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase 0.002
>d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: ADP-heptose LPS heptosyltransferase II
domain: ADP-heptose LPS heptosyltransferase II
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 44/330 (13%), Positives = 86/330 (26%), Gaps = 36/330 (10%)

Query: 7   RYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLS 66
           RYP  +IDV+A A  +        V  A    L     E  E   +   ++ + YD    
Sbjct: 27  RYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEIGERRKLGHSLREKRYDRAYV 86

Query: 67  TKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMV 126
                    +F                        LL++    +                
Sbjct: 87  L------PNSFKSALVPLFAGIPHRTGWRGEMRYGLLNDVRVLDKEAWPLMVERYIALAY 140

Query: 127 DWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQS 186
           D            P+   ++ +S   K     ++  +     + ++              
Sbjct: 141 DKGIMRTAQDLPQPLLWPQLQVSEGEKSYTCNQFSLSS---ERPMIGFCP-------GAE 190

Query: 187 RGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFI--------T 238
            G                 + E   + +    K+ E   +++    +            T
Sbjct: 191 FGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGET 250

Query: 239 TPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSEL---------KGRLFVPNAE 289
              Q   LI     ++  ++  + +A A  +P +AL+             K R+      
Sbjct: 251 QLDQAVILIAACKAIVTNDSGLMHVAAALNRPLVALYGPSSPDFTPPLSHKARVIRLITG 310

Query: 290 EKKCTVISSRTGK---LIDTPVEAVLNAMQ 316
             K     +  G    LID   + VL  + 
Sbjct: 311 YHKVRKGDAAEGYHQSLIDITPQRVLEELN 340

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
d1pswa_348 ADP-heptose LPS heptosyltransferase II {Escherichi 100.0
d1v4va_373 UDP-N-acetylglucosamine 2-epimerase {Thermus therm 96.2
d2bfwa1196 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 95.7
d1o6ca_377 UDP-N-acetylglucosamine 2-epimerase {Bacillus subt 94.61
d2iw1a1370 Lipopolysaccharide core biosynthesis protein RfaG 94.04
d1f0ka_351 Peptidoglycan biosynthesis glycosyltransferase Mur 92.58
d2f62a1152 Nucleoside 2-deoxyribosyltransferase {Trypanosoma 92.55
d1f6da_376 UDP-N-acetylglucosamine 2-epimerase {Escherichia c 91.53
d2f9fa1166 First mannosyl transferase WbaZ {Archaeoglobus ful 88.57
d1rrva_401 TDP-vancosaminyltransferase GftD {Amycolatopsis or 84.81
d1f8ya_156 Nucleoside 2-deoxyribosyltransferase {Lactobacillu 84.7
d2bisa1437 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 83.85
d1pn3a_391 TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi 83.24
d1s2da_167 Purine transdeoxyribosylase {Lactobacillus helveti 80.12
>d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: ADP-heptose LPS heptosyltransferase II
domain: ADP-heptose LPS heptosyltransferase II
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-46  Score=345.12  Aligned_cols=298  Identities=17%  Similarity=0.134  Sum_probs=224.6

Q ss_pred             ChhHhhhCCCCEEEEEeccCchhhhhhCCCCceEEEecCCCCCCCchhHHHHHHHHHhcCCcEEEEecCCchHHHHHHHH
Q 020516            1 MYLHITRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFM   80 (325)
Q Consensus         1 ~~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~Vd~v~~~~~~~~~~~~~~~~~l~~~Lr~~~yDl~i~~~~~~~~~~~~~~~   80 (325)
                      +++||+.||+++|+|++.++++++++++|+||+|++++.+.....+..+.++.+.+++.+||++|+++.+ +++++++++
T Consensus        21 i~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~id~v~~~~~~~~~~~~~~~~~l~~~l~~~~~D~~i~~~~~-~~~~~~~~~   99 (348)
T d1pswa_          21 YRTLQARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEIGERRKLGHSLREKRYDRAYVLPNS-FKSALVPLF   99 (348)
T ss_dssp             HHHHHHHSTTCEEEEEECGGGHHHHTTCTTEEEEEEC-------CHHHHHHHHHHTTTTTCSEEEECSCC-SGGGHHHHH
T ss_pred             HHHHHHHCCCCEEEEEEChhHHHHHhhCCCcCEEEEecCccccchhhhhhhHHHHhhhcccceEeecccc-cchhhHHHh
Confidence            3689999999999999999999999999999999999876544567778899999999999999999988 999999999


Q ss_pred             hCCCceeecccCCcccCCcccccceeccCCCcchhhhHHHHHHHHHHHcCCCCC--CCCCCCCCCCeeecCHHHHHHHHH
Q 020516           81 TTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFR--SVPRHPVPPLRVSISRRLKEVVAE  158 (325)
Q Consensus        81 ~~a~~rig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~lg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  158 (325)
                      ++++.++|+.     ......+++........ ...|..++|..++..++....  .++ .....+...+++++..+...
T Consensus       100 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  172 (348)
T d1pswa_         100 AGIPHRTGWR-----GEMRYGLLNDVRVLDKE-AWPLMVERYIALAYDKGIMRTAQDLP-QPLLWPQLQVSEGEKSYTCN  172 (348)
T ss_dssp             TTCSEEEEEC-----TTTCTTTCTEEECCCTT-TCCSHHHHHHHTTSCGGGCSSGGGSC-SSCCCCCCCCCHHHHHHHHH
T ss_pred             hccccccccc-----ccccccccccccccccc-cchhHHHHHHHHHHhhhccccccccc-cccccccccCCHHHHHHHHH
Confidence            9999999987     22222333332222211 124677788777655554211  111 11223455666776665443


Q ss_pred             HHHHcCCC-CCCeEEEecCCCCcccccccCCCCCCCCCHHHHHHHHHHhhcCC-CEEEecCCCchHHHHhHHccCC----
Q 020516          159 KYKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPHEKEREGVEDVVGDDA----  232 (325)
Q Consensus       159 ~~~~~~~~-~~~~i~i~~gas~~~~~~~~r~~~~K~wp~e~~~~l~~~l~~~~-~vvl~g~~~e~~~~~~i~~~~~----  232 (325)
                         ..+.. .+++|++++|+++..         .|+||.++|.+|++.|.+++ .++++|+|+|.+..+++.+...    
T Consensus       173 ---~~~~~~~~~~i~~~~~~~~~~---------~k~wp~~~~~~L~~~l~~~~~~ivl~g~~~e~~~~~~~~~~~~~~~~  240 (348)
T d1pswa_         173 ---QFSLSSERPMIGFCPGAEFGP---------AKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQ  240 (348)
T ss_dssp             ---HTTCCSSSCEEEEECCCTTCG---------GGSCCHHHHHHHHHHHHHTTCEEEECCCGGGHHHHHHHHTTSCHHHH
T ss_pred             ---HhccccCCCeEEeccccchhh---------ccccchHHHhhhHHHHhhcCCccccccccchHHHHHHHHHhhhcccc
Confidence               34444 467999999887643         48899999999999999887 8999999999999988876442    


Q ss_pred             ----CcccccChHHHHHHHHhCCEEEecCchHHHHHHhcCCCEEEEecCCCCCccccCCCCCCceeeeeCC---------
Q 020516          233 ----SIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIALFSSELKGRLFVPNAEEKKCTVISSR---------  299 (325)
Q Consensus       233 ----~~~~~~~~~el~ali~~a~l~I~~DTGp~HlAaAl~~P~iaLfg~t~p~~~~pp~~~~~~~~~~~~~---------  299 (325)
                          ++.+.++..|++++|++||++||+|||+||||+|+|+|+|+|||+|+|.+|+| + ++ ++.++...         
T Consensus       241 ~~~~~l~g~~sl~el~~li~~a~l~I~~Dtg~~HlAaa~g~p~i~lfg~~~~~~~~P-~-~~-~~~~l~~~~~c~~c~~~  317 (348)
T d1pswa_         241 AWCRNLAGETQLDQAVILIAACKAIVTNDSGLMHVAAALNRPLVALYGPSSPDFTPP-L-SH-KARVIRLITGYHKVRKG  317 (348)
T ss_dssp             TTEEECTTTSCHHHHHHHHHTSSEEEEESSHHHHHHHHTTCCEEEEESSSCTTSSCC-C-CT-TEEEEESSCC-------
T ss_pred             cccccccCCccHHHHHHHHhcceeEeecCccHHHHHHHcCCCEEEEECCCCHhhhCC-C-CC-CeEEEecCCCCCcccCC
Confidence                12223467999999999999999999999999999999999999999999998 7 44 44444322         


Q ss_pred             ------CCCCCCCCHHHHHHHHHHHHHh
Q 020516          300 ------TGKLIDTPVEAVLNAMQIFNES  321 (325)
Q Consensus       300 ------~~~m~~I~~~~V~~~~~~~~~~  321 (325)
                            ..||.+|+||+|++++++++.+
T Consensus       318 ~~~~~~~~c~~~I~~~~V~~~~~~lL~~  345 (348)
T d1pswa_         318 DAAEGYHQSLIDITPQRVLEELNALLLQ  345 (348)
T ss_dssp             ---CCCCHHHHTSCHHHHHHHHHHHHHH
T ss_pred             CCCCCchhhHhCCCHHHHHHHHHHHhcc
Confidence                  1379999999999999998764
>d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]} Back     information, alignment and structure
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]} Back     information, alignment and structure