Citrus Sinensis ID: 020530

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MSLLINQSVHFSRISCHQRSTAYGKQMAPGVSVHKSHSVAKKSIRCFSTNTFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQVVSCLLGLIYCVATTSPTWILTS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEEEEcccEEEEccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcEEEEEEEcccccccccccEEEEcEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcccccEEEEcc
Coil and Loop (DISEMBL)
msllinqsvhfsrischqrstaygkqmapgvsvhkshsvakksircfstntflSTLTVANLAAIGNAKALTMENVLEGAASVYtmadgslgdmfggflysaGQQANEAVLGQLSALSFTSLAVIFGAglvtslspctlsvlpltlgyigafgsgksraQIIGDSIAFSLGLATTLALLGvgasfagkaygqigtglplAASGLAIVMGLNLLEIIELqlpsffdnfdpraaaanfpSSVQAYLAGLTFAlaaspcstPVLATLLGYvatskdpliggtLLLSYTTGYVAPLLLAASFAGALQVVSCLLGLIYCVattsptwilts
Flexible Loop (DISEMBL)
MSLLINQSVHFSRISCHQRSTAYGKQMAPGVSVHKSHSVAKKSIRCFSTNTFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQVVSCLLGLIYCVAttsptwilts
Low Complexity Region (SEG)
MSLLINQSVHFSRISCHQRSTAYGKQMAPGvsvhkshsvakksIRCFSTNTFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSlglattlallgVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQVVSCLLGLIYCVATTSPTWILTS
Disordered region (IsUnstruct)
********VHFSRISCH********************SVAKKSIRCFSTNTFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQVVSCLLGLIYCVATTSPTWIL**
Disordered Region (DISOPRED)
*********************AYGKQMAPGVSVHKSHSVAKKSIRCFSTNTFLSTLTVANLAAIGNAKALTMENV*************************************LSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSF******************AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQVVSCLLGLIYCVATTSPTWILTS
Disordered Region (DISEMBL)
MSLLINQSVHFSRISCHQ*********************AKKSIRCFSTNTFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQVVSCLLGLIYCVATTSPTWILTS
Disordered Region (DISPRO)
*SLLINQSVHFSRISCHQRSTAYGKQMAPGVSVHKSHSVAKKSIRCFSTNTFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQVVSCLLGLIYCVATTSPTWILTS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLLINQSVHFSRISCHQRSTAYGKQMAPGVSVHKSHSVAKKSIRCFSTNTFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQVVSCLLGLIYCVATTSPTWILTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
Q2QY07	362	Cytochrome c-type biogene	yes	no	0.836	0.751	0.708	1e-105
Q2RAR6	367	Cytochrome c-type biogene	yes	no	0.836	0.741	0.708	1e-105
Q9M5P3	354	Cytochrome c-type biogene	yes	no	0.907	0.833	0.718	1e-104
P51364	240	Putative cytochrome c-typ	N/A	no	0.6	0.812	0.323	5e-26
Q1XDC3	224	Putative cytochrome c-typ	N/A	no	0.643	0.933	0.319	2e-25
Q9JYM0	601	Thiol:disulfide interchan	yes	no	0.541	0.292	0.310	2e-10
Q9JTL9	601	Thiol:disulfide interchan	yes	no	0.541	0.292	0.305	4e-10
P44202	213	Putative cytochrome c-typ	yes	no	0.526	0.802	0.265	3e-09
Q8XV41	608	Thiol:disulfide interchan	yes	no	0.566	0.302	0.299	8e-09
Q87KW0	613	Thiol:disulfide interchan	yes	no	0.547	0.290	0.316	1e-08

>sp|Q2QY07|CCDA2_ORYSJ Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 OS=Oryza sativa subsp. japonica GN=CCDA2 PE=2 SV=1

 Score =  382 bits (982), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/285 (70%), Positives = 235/285 (82%), Gaps = 13/285 (4%)

Query: 30  GVSVHKSHSVAKKSIR------------CFSTNTFLSTLTVANLAAIGNAKALTMENVLE 77
           GV   +  SV+K +IR                   L+T+ V +L A G A A  + + L 
Sbjct: 39  GVPRERGSSVSKAAIRGARLEAAARCSLVRQRPMLLATVAVGSLVAAGAANATEIGDSLL 98

Query: 78  GAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCT 137
           G++ +  +AD S+GD FG  LYSAGQQANEAV  QLSALSFTSLAVIFGAGLVTSLSPCT
Sbjct: 99  GSSGL-ALADLSIGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCT 157

Query: 138 LSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLP 197
           LSVLPLTLGYIGAFGSGK R++++G+S+AFSLGLATTLA+LGV ASFAGKAYGQ+G GLP
Sbjct: 158 LSVLPLTLGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFAGKAYGQVGQGLP 217

Query: 198 LAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCST 257
           +AASGLA++MGLNLLE+IELQLPSFF ++DPRAAAAN PSSVQAYLAGLTFALAASPCST
Sbjct: 218 VAASGLAVIMGLNLLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFALAASPCST 277

Query: 258 PVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQ 302
           PVLATLLGYVATS+DP++GG+LLL+YTTGYVAPLL+AASFAGALQ
Sbjct: 278 PVLATLLGYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQ 322

Probably involved in the transfer of reducing equivalents from stroma to thylakoid lumen and required for the biogenesis of the plastid cytochrome b6f complex.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2RAR6|CCDA1_ORYSJ Cytochrome c-type biogenesis ccda-like chloroplastic protein 1 OS=Oryza sativa subsp. japonica GN=CCDA1 PE=2 SV=1

 Score =  381 bits (979), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/285 (70%), Positives = 235/285 (82%), Gaps = 13/285 (4%)

Query: 30  GVSVHKSHSVAKKSIR------------CFSTNTFLSTLTVANLAAIGNAKALTMENVLE 77
           GV   +  SV+K +IR                   L+T+ V +L A G A A  + + L 
Sbjct: 44  GVPRERGSSVSKAAIRGARLEAAARCSLVRQRPMLLATVAVGSLVAAGAANATEIGDSLL 103

Query: 78  GAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCT 137
           G++ +  +AD S+GD FG  LYSAGQQANEAV  QLSALSFTSLAVIFGAGLVTSLSPCT
Sbjct: 104 GSSGL-ALADLSVGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCT 162

Query: 138 LSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLP 197
           LSVLPLTLGYIGAFGSGK R++++G+S+AFSLGLATTLA+LGV ASFAGKAYGQ+G GLP
Sbjct: 163 LSVLPLTLGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFAGKAYGQVGQGLP 222

Query: 198 LAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCST 257
           +AASGLA++MGLNLLE+IELQLPSFF ++DPRAAAAN PSSVQAYLAGLTFALAASPCST
Sbjct: 223 VAASGLAVIMGLNLLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFALAASPCST 282

Query: 258 PVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQ 302
           PVLATLLGYVATS+DP++GG+LLL+YTTGYVAPLL+AASFAGALQ
Sbjct: 283 PVLATLLGYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQ 327

Probably involved in the transfer of reducing equivalents from stroma to thylakoid lumen and required for the biogenesis of the plastid cytochrome b6f complex.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M5P3|CCDA_ARATH Cytochrome c-type biogenesis ccda-like chloroplastic protein OS=Arabidopsis thaliana GN=CCDA PE=1 SV=1

 Score =  377 bits (967), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/302 (71%), Positives = 245/302 (81%), Gaps = 7/302 (2%)

Query: 2   SLLINQSVHFSRISCHQRSTAYGKQMAPGVSVHKSHSVAKKSIRCFSTNTFLSTLTVANL 61
           S  +N    + R   H         ++  VS+ +  S   KSI+        S L VANL
Sbjct: 19  SCRLNHEKRWVRAGKHCELERERSLVSDAVSLERLES---KSIKL---AMLASGLGVANL 72

Query: 62  AAIGNAKALTMEN-VLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTS 120
             + +AKA  ++  VL+ A S+Y +A+GSLGD  G FLYSA QQANEAV  QLSALS TS
Sbjct: 73  VTLSSAKAADLKMIVLDQATSIYILAEGSLGDSVGNFLYSANQQANEAVQDQLSALSVTS 132

Query: 121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGV 180
           LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSR Q+IGD++AF+LGLATTLALLG+
Sbjct: 133 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRGQVIGDTVAFALGLATTLALLGI 192

Query: 181 GASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQ 240
            ASFAGKAYGQIG GLP+AASGLAIVMGLNLLEIIELQLPSFF+NFDPRAAAANFPSSVQ
Sbjct: 193 VASFAGKAYGQIGQGLPVAASGLAIVMGLNLLEIIELQLPSFFNNFDPRAAAANFPSSVQ 252

Query: 241 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGA 300
           AYLAGLTFALAASPCSTPVLATLLGYVATS+DP+IGG+LLL+YTTGYVAPL++AASFAGA
Sbjct: 253 AYLAGLTFALAASPCSTPVLATLLGYVATSRDPVIGGSLLLTYTTGYVAPLIVAASFAGA 312

Query: 301 LQ 302
           LQ
Sbjct: 313 LQ 314

Required for the transfer of reducing equivalents from stroma to thylakoid lumen. Involved in the biogenesis of the plastid cytochrome b6f complex by probably transferring reducing equivalents from stromal m-type thioredoxin (Trx-m) to the lumenal thioredoxin HCF164.

Arabidopsis thaliana (taxid: 3702)

>sp|P51364|YCXN_PORPU Putative cytochrome c-type biogenesis protein dbsD-like OS=Porphyra purpurea PE=3 SV=1

 Score =  118 bits (296), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 112/201 (55%), Gaps = 6/201 (2%)

Query: 98  LYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSR 157
           LY++    N   L QL+ ++  S + +F +GL TS SPC +S+LP+ + YI   G   S+
Sbjct: 7   LYNSQHLINNITLYQLNHINIASFSFVFFSGLFTSFSPCLISILPICIMYISGEGQKLSQ 66

Query: 158 AQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIEL 217
              + +   F LG  ++   LG+ A+   K Y Q+  G+P+ ++ + I MG +LL I+ L
Sbjct: 67  IDKLKNLFFFCLGAISSFTTLGLIATLLAKTYSQLFNGIPVISALVIIYMGFSLLNIVPL 126

Query: 218 QLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGG 277
                 +N + R    N   +++ YL+G+   LA S CSTP+  TLL +V ++ +  IG 
Sbjct: 127 ST----NNLNTRINNTN--QNIKMYLSGVGIGLAISSCSTPIFVTLLIWVTSNHNLFIGL 180

Query: 278 TLLLSYTTGYVAPLLLAASFA 298
             +L Y+ GY+ P+++ + F+
Sbjct: 181 IFILIYSIGYIFPIIIGSLFS 201

Could be involved in cytochrome c synthesis.

Porphyra purpurea (taxid: 2787)

>sp|Q1XDC3|YCXN_PORYE Putative cytochrome c-type biogenesis protein dbsD-like OS=Porphyra yezoensis PE=3 SV=1

 Score =  117 bits (292), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 115/216 (53%), Gaps = 7/216 (3%)

Query: 97  FLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKS 156
           F+Y++    N   L QL+ L+ TS + IF +GL TSLSPC +S+LP+ + YI       +
Sbjct: 6   FVYNSQHFVNNITLYQLNHLNSTSFSFIFLSGLFTSLSPCIISILPVCILYIAGETQKLN 65

Query: 157 RAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIE 216
                 +   F LG  ++   LG+ A+   K Y Q   G+P  ++ + I MGLNLL I+ 
Sbjct: 66  PINKTKNLFLFCLGTISSFITLGILATLITKTYSQFFNGIPTISAVVIIYMGLNLLNIVH 125

Query: 217 LQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIG 276
           +  P F           N   + + YL+G+   +A S CSTP+  TLL ++ +++    G
Sbjct: 126 INSPKF------NGLVTNNNYNFKMYLSGVGIGIAISSCSTPIFVTLLVWINSTQKIFTG 179

Query: 277 GTLLLSYTTGYVAPLLLAASFAGA-LQVVSCLLGLI 311
              +L Y+ GY+ P+++ + F+ + L++   L G+I
Sbjct: 180 LIFILIYSIGYIFPIIIGSIFSTSFLKLTESLSGII 215

Could be involved in cytochrome c synthesis.

Porphyra yezoensis (taxid: 2788)

>sp|Q9JYM0|DSBD_NEIMB Thiol:disulfide interchange protein DsbD OS=Neisseria meningitidis serogroup B (strain MC58) GN=dsbD PE=1 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 14/190 (7%)

Query: 120 SLAVIFGAGLVTSLSPCTLSVLPLTLG-YIGAFGSGKSRAQIIGDSIAFSLGLATTLALL 178
           +L   F AGL  S + C   +LP+     +G   +GK+RA ++  S+ +  GLA T  L+
Sbjct: 191 NLLAFFLAGLGLSFTACMYPLLPIVSSIVVGDKKAGKARAFVL--SVVYVQGLALTYTLV 248

Query: 179 GVGASFAG---KAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLP----SFFDNFDPRAA 231
           G+ A   G     + Q    + LAAS L +V+ L++  +  +QLP    S+F N   R +
Sbjct: 249 GIVAGLTGALLTVWLQ-QAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRLS 307

Query: 232 AANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPL 291
                  V  ++ G+  AL   PC  P LA  LGY+  + D ++GG  L +   G   PL
Sbjct: 308 GGKI---VSVFIMGILSALIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPL 364

Query: 292 LLAASFAGAL 301
           +   +F G +
Sbjct: 365 IAIGTFGGHI 374

Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps.

Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9JTL9|DSBD_NEIMA Thiol:disulfide interchange protein DsbD OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=dsbD PE=3 SV=2

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 14/190 (7%)

Query: 120 SLAVIFGAGLVTSLSPCTLSVLPLTLG-YIGAFGSGKSRAQIIGDSIAFSLGLATTLALL 178
           +L   F AGL  S + C   +LP+     +G   +GK+RA ++  S+ +  GL+ T  L+
Sbjct: 191 NLLAFFLAGLGLSFTACMYPLLPIVSSIVVGDKKAGKARAFVL--SVVYVQGLSLTYTLV 248

Query: 179 GVGASFAG---KAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLP----SFFDNFDPRAA 231
           G+ A   G     + Q    + LAAS L +V+ L++  +  +QLP    S+F N   R +
Sbjct: 249 GIVAGLTGALLTVWLQ-QAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRLS 307

Query: 232 AANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPL 291
                  V  ++ G+  AL   PC  P LA  LGY+  + D ++GG  L +   G   PL
Sbjct: 308 GGKI---VSVFIMGILSALIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPL 364

Query: 292 LLAASFAGAL 301
           +   +F G +
Sbjct: 365 IAIGTFGGHI 374

Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps.

Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) (taxid: 122587)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|P44202|Y1454_HAEIN Putative cytochrome c-type biogenesis protein HI_1454 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1454 PE=3 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 10/181 (5%)

Query: 121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGV 180
           +  +F AGL + LSPC   ++P+   Y G    G  +     ++  F LGL+ T   LG 
Sbjct: 8   IGTVFLAGLASFLSPCIFPIIPI---YFGILSKGGKKVL---NTFLFILGLSLTFVSLGF 61

Query: 181 GASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQ 240
              F G       T   + A  + I++G++ L I ++ L       + + +  +  ++++
Sbjct: 62  SFGFLGNILFSNTT--RIIAGVIVIILGIHQLGIFKIGLLERTKLVEIKTSGKS--TALE 117

Query: 241 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGA 300
           A++ GLTF+L  +PC  P+LA++L         L G +++  Y  G   P +L + F+ +
Sbjct: 118 AFVLGLTFSLGWTPCIGPILASVLALSGDEGSALYGASMMFVYVLGLATPFVLFSFFSDS 177

Query: 301 L 301
           L
Sbjct: 178 L 178

Could be involved in cytochrome c synthesis.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

>sp|Q8XV41|DSBD_RALSO Thiol:disulfide interchange protein DsbD OS=Ralstonia solanacearum (strain GMI1000) GN=dsbD PE=3 SV=1

 Score = 61.6 bits (148), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 93/207 (44%), Gaps = 23/207 (11%)

Query: 135 PCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKA-YGQIG 193
           PC L +LP+    +   G   +R +    S+A+ LG+A     +GV A  AG+     + 
Sbjct: 201 PCVLPMLPILSAIV--VGEHATRMRAAAVSVAYVLGMAVVYTAVGVAAGLAGQGLQAALQ 258

Query: 194 TGLPLAA-SGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQ---AYLAGLTFA 249
               L A + L +V+ L +  + ELQLP+ + +      A+N  S  Q   A + G   A
Sbjct: 259 NAWVLGAFAALMVVLSLAMFGLYELQLPAAWRHR--LTQASNRLSGGQVAGAAVMGALSA 316

Query: 250 LAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAG--------AL 301
           L  SPC TP LA  L Y+A + + ++GG  L S + G   PL+L    AG         L
Sbjct: 317 LIVSPCVTPALAGALAYIAQTGNAMVGGAALFSMSIGMGVPLVLVGVGAGNLLPRAGYWL 376

Query: 302 QVVSCLLGLI------YCVATTSPTWI 322
            V   + G I      + V    P W+
Sbjct: 377 VVTKAIFGFILLGVALWIVQPVLPAWL 403

Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q87KW0|DSBD_VIBPA Thiol:disulfide interchange protein DsbD OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=dsbD PE=3 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 93/202 (46%), Gaps = 24/202 (11%)

Query: 126 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGK-SRAQIIGDSIAFSLGLATTLALLGVGASF 184
           G GL  + +PC L + P+    +   GSGK S+ + +G S+ +  G+A T  LLG+  + 
Sbjct: 221 GVGL--AFTPCVLPMYPILTSIV--LGSGKLSQRRALGLSLVYVQGMALTYTLLGLVVAS 276

Query: 185 AGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPS----FFDNFDPRAAAANFPS 237
           AG  + Q     P    GL+I+   + L++  +  LQLPS    + +N   +       S
Sbjct: 277 AGMQF-QAAMQHPYVLIGLSILFVTLALSMFGVYTLQLPSSVQTWLNNLSNKQQGG---S 332

Query: 238 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 297
           S   +  G    L  SPC+T  L+  L YVA S D L GG  L +   G   PL+L A F
Sbjct: 333 SAGVFAMGAISGLVCSPCTTAPLSGALLYVAQSGDLLTGGIALYALAMGMGIPLILVAVF 392

Query: 298 --------AGALQVVSCLLGLI 311
                    G +  V  L G I
Sbjct: 393 GNKLLPKAGGWMDRVKTLFGFI 414

Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps.

Vibrio parahaemolyticus (taxid: 670)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
225461322	358	PREDICTED: cytochrome c-type biogenesis	0.92	0.835	0.704	1e-111
255580440	350	Thiol:disulfide interchange protein dsbD	0.929	0.862	0.726	1e-108
356517207	344	PREDICTED: cytochrome c-type biogenesis	0.892	0.843	0.734	1e-106
449463144	362	PREDICTED: cytochrome c-type biogenesis	0.806	0.723	0.797	1e-106
358249182	344	cytochrome c-type biogenesis ccda-like c	0.852	0.805	0.747	1e-105
255646784	340	unknown [Glycine max]	0.892	0.852	0.728	1e-105
27464259	345	chloroplast biogenesis protein [Lotus ja	0.836	0.788	0.762	1e-104
222616608	340	hypothetical protein OsJ_35161 [Oryza sa	0.836	0.8	0.708	1e-104
122206055	362	RecName: Full=Cytochrome c-type biogenes	0.836	0.751	0.708	1e-104
218185213	362	hypothetical protein OsI_35045 [Oryza sa	0.836	0.751	0.708	1e-103

>gi|225461322|ref|XP_002284546.1| PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein 2 [Vitis vinifera] gi|302143076|emb|CBI20371.3| unnamed protein product [Vitis vinifera]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/322 (70%), Positives = 256/322 (79%), Gaps = 23/322 (7%)

Query: 1   MSLLINQS-----VHFSRISCHQRSTAYGKQMAPGVSVHKSHSVAK---KSIRCFS---- 48
           M+L+IN         F + S H+  T  GK   P V V K  ++A+   + I   S    
Sbjct: 1   MNLVINHRHSSYGTPFCKFSSHKHET--GKYKVP-VRVPKRSAMAEDLTQDIVSLSKTEK 57

Query: 49  TNTFL--------STLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYS 100
           + +FL        +       A    AKA  ++++LEGA SVYT+ADGS+GD FGGFLYS
Sbjct: 58  SGSFLIKTAATSSAFAAANFFATTDMAKAANIKDILEGATSVYTLADGSIGDWFGGFLYS 117

Query: 101 AGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQI 160
           AGQQAN AV  QLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGK RA++
Sbjct: 118 AGQQANAAVQDQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKGRAEV 177

Query: 161 IGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLP 220
           IG+S+AFSLGLATTLA+LGV ASFAGKAYGQIG GLPLAASGLA++MGLNLLEIIELQLP
Sbjct: 178 IGNSVAFSLGLATTLAILGVAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLP 237

Query: 221 SFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLL 280
           SFF+NFDPR+AAAN PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDP+IGG+LL
Sbjct: 238 SFFNNFDPRSAAANLPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLL 297

Query: 281 LSYTTGYVAPLLLAASFAGALQ 302
           L+YTTGYVAPLLLAASFAGALQ
Sbjct: 298 LTYTTGYVAPLLLAASFAGALQ 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580440|ref|XP_002531046.1| Thiol:disulfide interchange protein dsbD precursor, putative [Ricinus communis] gi|223529374|gb|EEF31339.1| Thiol:disulfide interchange protein dsbD precursor, putative [Ricinus communis]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 226/311 (72%), Positives = 259/311 (83%), Gaps = 9/311 (2%)

Query: 1   MSLLINQSV------HFSRISCHQRSTAYGKQMAPGVSVHKS-HSVAKKSIRCFST-NTF 52
           MSLLINQSV      +  + + H +  A GK  +   ++ ++  S++K   RC S   T 
Sbjct: 1   MSLLINQSVSCYLNNNNGQRTNHSKEKATGKLSSTNENLRRNVLSLSKNDSRCSSRIKTI 60

Query: 53  LSTLTVANLAAIGNAKALTMENVLEGAA-SVYTMADGSLGDMFGGFLYSAGQQANEAVLG 111
            ++L V+NL  I  AKA++ + +LE A   +YT+ADG +GD  G  LYSAGQQANEAV  
Sbjct: 61  ATSLAVSNLINIDAAKAVSTDKLLEEATIYMYTLADGGIGDWLGRLLYSAGQQANEAVQD 120

Query: 112 QLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGL 171
           QLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRA+++ DSIAF+LGL
Sbjct: 121 QLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVADSIAFALGL 180

Query: 172 ATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAA 231
           ATTLALLG+GASFAGKAYGQIG GLPLAASGLA++MGLNLLEIIELQLPSFF+NFDPRAA
Sbjct: 181 ATTLALLGIGASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFNNFDPRAA 240

Query: 232 AANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPL 291
           AANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVA SKDP++GG+LLL+YTTGYVAPL
Sbjct: 241 AANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPIVGGSLLLTYTTGYVAPL 300

Query: 292 LLAASFAGALQ 302
           LLAASFAGALQ
Sbjct: 301 LLAASFAGALQ 311

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517207|ref|XP_003527280.1| PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like [Glycine max]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 230/313 (73%), Positives = 258/313 (82%), Gaps = 23/313 (7%)

Query: 1   MSLLINQSVHFSR---ISC--HQRSTAYGKQMAPGVSVHKSHSVAKKSIRC-FSTN---- 50
           MSL  N S+       +SC  HQ     G+ + P ++ H+  S  +K +R  +  N    
Sbjct: 5   MSLCGNYSLQLQNRRIVSCNLHQD----GRHIVP-INTHQKPSKPEKCLRSKWKINGNNI 59

Query: 51  -TFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAV 109
            T +  +TVA+L A   AKA       E AAS+Y +ADGSLGD FGGFL+SAGQQANEAV
Sbjct: 60  GTCIGVMTVAHLVAPVAAKA-------EVAASIYALADGSLGDWFGGFLFSAGQQANEAV 112

Query: 110 LGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSL 169
            GQL++LSFTSLAVI+GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQ++GDSIAFSL
Sbjct: 113 QGQLTSLSFTSLAVIYGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQVVGDSIAFSL 172

Query: 170 GLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPR 229
           GLATTLALLGVGASFAGKAYGQIG GLPLAASGLAI+MGLNLLEIIEL+LPSFFD+FDPR
Sbjct: 173 GLATTLALLGVGASFAGKAYGQIGQGLPLAASGLAIIMGLNLLEIIELRLPSFFDSFDPR 232

Query: 230 AAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVA 289
           AAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVA SKDP+IGG+LLL+YTTGYV+
Sbjct: 233 AAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYVS 292

Query: 290 PLLLAASFAGALQ 302
           PLLLAASFAGALQ
Sbjct: 293 PLLLAASFAGALQ 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463144|ref|XP_004149294.1| PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like [Cucumis sativus] gi|449528927|ref|XP_004171453.1| PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like [Cucumis sativus]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/262 (79%), Positives = 236/262 (90%)

Query: 41  KKSIRCFSTNTFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYS 100
           + S   F    F++ ++  +  A+  AKA T++++ EGAASVYT+ADG +GD FGG LYS
Sbjct: 62  RNSRNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGMGDWFGGILYS 121

Query: 101 AGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQI 160
           AGQQAN AV  QLSALSFTSLAVIFGAG VTSLSPCTLSVLPLTLGYIGAFGSGKS+A++
Sbjct: 122 AGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEV 181

Query: 161 IGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLP 220
           +G+S+AFSLGLATTLALLG+GASFAGKAYGQIG GLPLAASGLA++MGLNLLEIIELQLP
Sbjct: 182 VGNSVAFSLGLATTLALLGIGASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLP 241

Query: 221 SFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLL 280
           SFF+NFDPR+AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDP+IGG+LL
Sbjct: 242 SFFNNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPIIGGSLL 301

Query: 281 LSYTTGYVAPLLLAASFAGALQ 302
           L+YTTGYV PLLLAASFAGALQ
Sbjct: 302 LTYTTGYVVPLLLAASFAGALQ 323

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249182|ref|NP_001240262.1| cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like [Glycine max] gi|32402380|gb|AAP81162.1| c-type cytochrome biogenesis protein [Glycine max] gi|255636862|gb|ACU18764.1| unknown [Glycine max]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/297 (74%), Positives = 249/297 (83%), Gaps = 20/297 (6%)

Query: 14  ISC--HQRSTAYGKQMAPGVSVHKSHSVAKKSIRCF------STNTFLSTLTVANLAAIG 65
           +SC  HQ     G+ + P ++ H+  S  +  +R        +  T +  +TVA+L A  
Sbjct: 21  VSCNLHQD----GRHIVP-INTHQKTSKPENCLRSKWKINGNNIRTCIGVMTVAHLVAPV 75

Query: 66  NAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIF 125
            AKA       E AAS+Y +ADGSL D FGGFLYSAGQQANEAV GQL++LSFTSLAVI+
Sbjct: 76  TAKA-------EVAASIYALADGSLNDWFGGFLYSAGQQANEAVQGQLTSLSFTSLAVIY 128

Query: 126 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFA 185
           GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRA+++GDSIAFSLGLATTLALLGVGASFA
Sbjct: 129 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGDSIAFSLGLATTLALLGVGASFA 188

Query: 186 GKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAG 245
           GKAYGQIG GLPLAASGLAI+MGLNLLEIIEL+LPSFFD+FDPRAAAANFPSSVQAYLAG
Sbjct: 189 GKAYGQIGQGLPLAASGLAIIMGLNLLEIIELRLPSFFDSFDPRAAAANFPSSVQAYLAG 248

Query: 246 LTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQ 302
           LTFALAASPCSTPVLATLLGYVA SKDP+IGG+LLL+YTTGYV+PLLLAASFAGALQ
Sbjct: 249 LTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYVSPLLLAASFAGALQ 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646784|gb|ACU23864.1| unknown [Glycine max]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 228/313 (72%), Positives = 256/313 (81%), Gaps = 23/313 (7%)

Query: 1   MSLLINQSVHFSR---ISC--HQRSTAYGKQMAPGVSVHKSHSVAKKSIRC-FSTN---- 50
           MSL  N  +       +SC  HQ     G+ + P ++ H+  S  +K +R  +  N    
Sbjct: 1   MSLCGNYGLQLQNRRIVSCNLHQD----GRHIVP-INTHQKPSKPEKCLRSKWKINGNNI 55

Query: 51  -TFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAV 109
            T +  +TVA+L A   AKA       E AAS+Y +ADGSLGD FGGFL+SAGQQANEAV
Sbjct: 56  GTCIGVMTVAHLVAPVAAKA-------EVAASIYALADGSLGDWFGGFLFSAGQQANEAV 108

Query: 110 LGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSL 169
            GQL++LSFTSLAVI+GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQ++GDSIAFSL
Sbjct: 109 QGQLTSLSFTSLAVIYGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQVVGDSIAFSL 168

Query: 170 GLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPR 229
           GLATTLALLGVGASFAGKAYGQIG GLPLAASGLAI+MGLNLLEIIEL+LPSFFD+FDPR
Sbjct: 169 GLATTLALLGVGASFAGKAYGQIGQGLPLAASGLAIIMGLNLLEIIELRLPSFFDSFDPR 228

Query: 230 AAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVA 289
           AAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVA SKDP+I G+LLL+YTTGYV+
Sbjct: 229 AAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIRGSLLLTYTTGYVS 288

Query: 290 PLLLAASFAGALQ 302
           PLLLAASFAGALQ
Sbjct: 289 PLLLAASFAGALQ 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27464259|gb|AAO16018.1| chloroplast biogenesis protein [Lotus japonicus]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/286 (76%), Positives = 243/286 (84%), Gaps = 14/286 (4%)

Query: 23  YGKQMAPGVSVHKSHSVAKKSIRC-FSTN-----TFLSTLTVANLAAIGNAKALTMENVL 76
           +G+ + P ++VHK  S  +  ++  + +N     TF+  +T ANL A   AKA       
Sbjct: 28  HGRHVVP-INVHKKASEPENCLQSDWKSNGNNIRTFIGAMTAANLVAPIAAKA------- 79

Query: 77  EGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPC 136
           E AAS Y +ADGS+ D FGG LYSAGQQANEAVL QLS+LSFTSLAVIFGAGLVTSLSPC
Sbjct: 80  EVAASFYDLADGSINDWFGGILYSAGQQANEAVLDQLSSLSFTSLAVIFGAGLVTSLSPC 139

Query: 137 TLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGL 196
           TLSVLPLTLGYIGAFGSGKSRA++IGDSIAFSLGLATTLALLGV ASFAGKAYGQIG GL
Sbjct: 140 TLSVLPLTLGYIGAFGSGKSRAEVIGDSIAFSLGLATTLALLGVAASFAGKAYGQIGQGL 199

Query: 197 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 256
           PLAASGLA++MGLNLLEIIELQLPSFFD+FDPR+ AAN PSSVQAYLAGLTFALAASPCS
Sbjct: 200 PLAASGLAVIMGLNLLEIIELQLPSFFDSFDPRSVAANLPSSVQAYLAGLTFALAASPCS 259

Query: 257 TPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQ 302
           TPVLATLLGYVA SKDP+IGG+LLL+YTTGY+APLLLAASFAGALQ
Sbjct: 260 TPVLATLLGYVAASKDPVIGGSLLLTYTTGYIAPLLLAASFAGALQ 305

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222616608|gb|EEE52740.1| hypothetical protein OsJ_35161 [Oryza sativa Japonica Group]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/285 (70%), Positives = 235/285 (82%), Gaps = 13/285 (4%)

Query: 30  GVSVHKSHSVAKKSIR------------CFSTNTFLSTLTVANLAAIGNAKALTMENVLE 77
           GV   +  SV+K +IR                   L+T+ V +L A G A A  + + L 
Sbjct: 39  GVPRERGSSVSKAAIRGARLEAAARCSLVRQRPMLLATVAVGSLVAAGAANATEIGDSLL 98

Query: 78  GAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCT 137
           G++ +  +AD S+GD FG  LYSAGQQANEAV  QLSALSFTSLAVIFGAGLVTSLSPCT
Sbjct: 99  GSSGL-ALADLSIGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCT 157

Query: 138 LSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLP 197
           LSVLPLTLGYIGAFGSGK R++++G+S+AFSLGLATTLA+LGV ASFAGKAYGQ+G GLP
Sbjct: 158 LSVLPLTLGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFAGKAYGQVGQGLP 217

Query: 198 LAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCST 257
           +AASGLA++MGLNLLE+IELQLPSFF ++DPRAAAAN PSSVQAYLAGLTFALAASPCST
Sbjct: 218 VAASGLAVIMGLNLLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFALAASPCST 277

Query: 258 PVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQ 302
           PVLATLLGYVATS+DP++GG+LLL+YTTGYVAPLL+AASFAGALQ
Sbjct: 278 PVLATLLGYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQ 322

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|122206055|sp|Q2QY07.1|CCDA2_ORYSJ RecName: Full=Cytochrome c-type biogenesis ccda-like chloroplastic protein 2; AltName: Full=Cytochrome b6f biogenesis protein CCDA2; Flags: Precursor gi|77552967|gb|ABA95763.1| Cytochrome C biogenesis protein transmembrane region containing protein, expressed [Oryza sativa Japonica Group]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/285 (70%), Positives = 235/285 (82%), Gaps = 13/285 (4%)

Query: 30  GVSVHKSHSVAKKSIR------------CFSTNTFLSTLTVANLAAIGNAKALTMENVLE 77
           GV   +  SV+K +IR                   L+T+ V +L A G A A  + + L 
Sbjct: 39  GVPRERGSSVSKAAIRGARLEAAARCSLVRQRPMLLATVAVGSLVAAGAANATEIGDSLL 98

Query: 78  GAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCT 137
           G++ +  +AD S+GD FG  LYSAGQQANEAV  QLSALSFTSLAVIFGAGLVTSLSPCT
Sbjct: 99  GSSGL-ALADLSIGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCT 157

Query: 138 LSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLP 197
           LSVLPLTLGYIGAFGSGK R++++G+S+AFSLGLATTLA+LGV ASFAGKAYGQ+G GLP
Sbjct: 158 LSVLPLTLGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFAGKAYGQVGQGLP 217

Query: 198 LAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCST 257
           +AASGLA++MGLNLLE+IELQLPSFF ++DPRAAAAN PSSVQAYLAGLTFALAASPCST
Sbjct: 218 VAASGLAVIMGLNLLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFALAASPCST 277

Query: 258 PVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQ 302
           PVLATLLGYVATS+DP++GG+LLL+YTTGYVAPLL+AASFAGALQ
Sbjct: 278 PVLATLLGYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQ 322

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218185213|gb|EEC67640.1| hypothetical protein OsI_35045 [Oryza sativa Indica Group] gi|222615496|gb|EEE51628.1| hypothetical protein OsJ_32910 [Oryza sativa Japonica Group]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/285 (70%), Positives = 235/285 (82%), Gaps = 13/285 (4%)

Query: 30  GVSVHKSHSVAKKSIR------------CFSTNTFLSTLTVANLAAIGNAKALTMENVLE 77
           GV   +  SV+K +IR                   L+T+ V +L A G A A  + + L 
Sbjct: 39  GVPRERGSSVSKAAIRGARLEAAARCSLVRQRPMLLATVAVGSLVAAGAANATEIGDSLL 98

Query: 78  GAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCT 137
           G++ +  +AD S+GD FG  LYSAGQQANEAV  QLSALSFTSLAVIFGAGLVTSLSPCT
Sbjct: 99  GSSGL-ALADLSVGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCT 157

Query: 138 LSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLP 197
           LSVLPLTLGYIGAFGSGK R++++G+S+AFSLGLATTLA+LGV ASFAGKAYGQ+G GLP
Sbjct: 158 LSVLPLTLGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFAGKAYGQVGQGLP 217

Query: 198 LAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCST 257
           +AASGLA++MGLNLLE+IELQLPSFF ++DPRAAAAN PSSVQAYLAGLTFALAASPCST
Sbjct: 218 VAASGLAVIMGLNLLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFALAASPCST 277

Query: 258 PVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQ 302
           PVLATLLGYVATS+DP++GG+LLL+YTTGYVAPLL+AASFAGALQ
Sbjct: 278 PVLATLLGYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQ 322

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
UNIPROTKB|Q748P3	228	dsbD "Thiol:disulfide intercha	0.572	0.815	0.300	3e-21
TIGR_CMR|GSU_2958	228	GSU_2958 "thiol:disulfide inte	0.572	0.815	0.300	3e-21
TIGR_CMR|CHY_1095	395	CHY_1095 "thioredoxin domain s	0.618	0.508	0.317	2.6e-20
UNIPROTKB|Q5LUR2	245	soxV "Sulfur oxidation V prote	0.535	0.710	0.308	3.7e-16
TIGR_CMR|SPO_0991	245	SPO_0991 "sulfur oxidation V p	0.535	0.710	0.308	3.7e-16
TIGR_CMR|CBU_1723	630	CBU_1723 "thiol:disulfide inte	0.538	0.277	0.308	1e-09
TIGR_CMR|SO_0696	610	SO_0696 "thiol:disulfide inter	0.556	0.296	0.284	4.3e-09
UNIPROTKB|Q5LS73	250	ccdA "Cytochrome c-type biogen	0.507	0.66	0.320	5.3e-09
TIGR_CMR|SPO_1896	250	SPO_1896 "cytochrome c-type bi	0.507	0.66	0.320	5.3e-09
TIGR_CMR|CPS_0953	608	CPS_0953 "thiol:disulfide inte	0.710	0.379	0.242	1.8e-08

UNIPROTKB|Q748P3 dsbD "Thiol:disulfide interchange protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 58/193 (30%), Positives = 97/193 (50%)

Query:   118 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXX 177
             F +   +F  G+++S SPC L+ +PL +G++G + + +SR +    S++F          
Sbjct:    16 FLAFVAVFVGGVLSSASPCVLATIPLVVGFVGGYAA-ESRKKAFLYSLSFIVGLSLTFTI 74

Query:   178 XXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPS 237
                 A+  G  +G +G     A   +A+ MGL ++   EL+LP     F P+     F  
Sbjct:    75 FGAAAALLGTMFGTVGGWWYAAVGAVAVAMGLQMMGFYELRLP-VLPQFRPKRGG--FWG 131

Query:   238 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 297
                A L GL F +A+SPC+TPVL  +L + A   + L G  LL +Y  G+   +L A +F
Sbjct:   132 ---ALLLGLFFGVASSPCATPVLVVILSFAALQGNILYGTLLLFTYALGHCLLMLAAGTF 188

Query:   298 AGALQVVSCLLGL 310
              G ++  +   G+
Sbjct:   189 TGFVEAFAASRGV 201

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2958 GSU_2958 "thiol:disulfide interchange protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 58/193 (30%), Positives = 97/193 (50%)

Query:   118 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXX 177
             F +   +F  G+++S SPC L+ +PL +G++G + + +SR +    S++F          
Sbjct:    16 FLAFVAVFVGGVLSSASPCVLATIPLVVGFVGGYAA-ESRKKAFLYSLSFIVGLSLTFTI 74

Query:   178 XXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPS 237
                 A+  G  +G +G     A   +A+ MGL ++   EL+LP     F P+     F  
Sbjct:    75 FGAAAALLGTMFGTVGGWWYAAVGAVAVAMGLQMMGFYELRLP-VLPQFRPKRGG--FWG 131

Query:   238 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 297
                A L GL F +A+SPC+TPVL  +L + A   + L G  LL +Y  G+   +L A +F
Sbjct:   132 ---ALLLGLFFGVASSPCATPVLVVILSFAALQGNILYGTLLLFTYALGHCLLMLAAGTF 188

Query:   298 AGALQVVSCLLGL 310
              G ++  +   G+
Sbjct:   189 TGFVEAFAASRGV 201

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_1095 CHY_1095 "thioredoxin domain selenoprotein/cytochrome C biogenesis family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 243 (90.6 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 66/208 (31%), Positives = 96/208 (46%)

Query:   100 SAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQ 159
             S  Q   + + G L      +L V+F  G+ TS +PC L ++PL +GY G + +G+S A+
Sbjct:   167 SFAQTLADKLPGLLGDSKLLALFVVFLGGIATSFTPCILGMIPLIIGYTGGY-AGRSPAK 225

Query:   160 IIGDSIAFSXXXXXXXXXXXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQL 219
                 S+ F            VG    G                +AI+MG  ++    + L
Sbjct:   226 GFIYSLFFVLGLATTLTLLGVGIGVLGTFIKSRLFAFNFILGIVAILMGFAVMGFYTINL 285

Query:   220 PSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTL 279
             P       P      F S    YL GL F L+ASPC+TPVL  ++ Y      PL GG L
Sbjct:   286 PGL--KRMPVKGTGLFSS----YLMGLFFGLSASPCATPVLIVIVTYALAKASPLFGGAL 339

Query:   280 LLSYTTGYVAPLLLAASFAGALQVVSCL 307
             L SY+ G+  PL+LA +F+  L  ++ L
Sbjct:   340 LFSYSFGHGLPLILAGTFSAFLGKITSL 367

GO:0017004 "cytochrome complex assembly" evidence=ISS

UNIPROTKB|Q5LUR2 soxV "Sulfur oxidation V protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 58/188 (30%), Positives = 90/188 (47%)

Query:   121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAF------GSGK----SRAQIIGDSIAFSXX 170
             L  +F AGL++  +PC L ++P  L Y+G        G G+    ++ ++I  S+AF+  
Sbjct:     7 LGALF-AGLLSFFTPCVLPMVPFYLSYMGGLSMAELRGDGRIAPGAQRRLIVSSVAFAAG 65

Query:   171 XXXXXXXXXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRA 230
                      +GA+  G+ +G     L  AA+ + +V GL+ L +I + L       D   
Sbjct:    66 VTSVFMMLGMGATALGRLFGTYLDTLSWAAAAILVVFGLHFLGVIRVPLLYREARMDSTM 125

Query:   231 AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAP 290
              A+     + AYL GL F    +PC  P LA +L   +   +   GG LLL Y  G  AP
Sbjct:   126 PASTL---LGAYLMGLAFGFGWTPCVGPALAAILMIASGMGEIWRGGLLLLVYGIGMTAP 182

Query:   291 LLLAASFA 298
              ++AA FA
Sbjct:   183 FVVAAFFA 190

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0019417 "sulfur oxidation" evidence=ISS

TIGR_CMR|SPO_0991 SPO_0991 "sulfur oxidation V protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 58/188 (30%), Positives = 90/188 (47%)

Query:   121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAF------GSGK----SRAQIIGDSIAFSXX 170
             L  +F AGL++  +PC L ++P  L Y+G        G G+    ++ ++I  S+AF+  
Sbjct:     7 LGALF-AGLLSFFTPCVLPMVPFYLSYMGGLSMAELRGDGRIAPGAQRRLIVSSVAFAAG 65

Query:   171 XXXXXXXXXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRA 230
                      +GA+  G+ +G     L  AA+ + +V GL+ L +I + L       D   
Sbjct:    66 VTSVFMMLGMGATALGRLFGTYLDTLSWAAAAILVVFGLHFLGVIRVPLLYREARMDSTM 125

Query:   231 AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAP 290
              A+     + AYL GL F    +PC  P LA +L   +   +   GG LLL Y  G  AP
Sbjct:   126 PASTL---LGAYLMGLAFGFGWTPCVGPALAAILMIASGMGEIWRGGLLLLVYGIGMTAP 182

Query:   291 LLLAASFA 298
              ++AA FA
Sbjct:   183 FVVAAFFA 190

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0019417 "sulfur oxidation" evidence=ISS

TIGR_CMR|CBU_1723 CBU_1723 "thiol:disulfide interchange protein DsbD" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 168 (64.2 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 58/188 (30%), Positives = 80/188 (42%)

Query:   118 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXX 177
             F  L   FG GL+ S +PC L ++P+  G I   G  K   +  G S+ +          
Sbjct:   221 FFVLLSFFGFGLLLSFTPCVLPMIPVLSGII--VGQQKYPKRAFGLSLMYVLGMAITYAI 278

Query:   178 XXVGASFAGKAYGQIGTGLPLAA---SGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAAN 234
               V   F G    Q     P      S L I M L+L  + +LQLP     +  R A A+
Sbjct:   279 AGVIFGFIGSTV-QAAFQNPWLIGLFSLLFIAMALSLFGLYDLQLPQ---RWQTRLAQAS 334

Query:   235 FPSSVQAYLA----GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAP 290
                    YL     G    L  SPC TP L  +LGY++ + +  +GG  L +   G  AP
Sbjct:   335 DRQKHGTYLGTALMGALSTLILSPCVTPALVGVLGYISHTGNASLGGVALFTMGLGMGAP 394

Query:   291 LLLAASFA 298
             LLL  +F+
Sbjct:   395 LLLLGAFS 402

GO:0009055 "electron carrier activity" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=ISS

TIGR_CMR|SO_0696 SO_0696 "thiol:disulfide interchange protein DsbD" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 164 (62.8 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
 Identities = 53/186 (28%), Positives = 84/186 (45%)

Query:   120 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXXXX 179
             +L + FG G+  +L+PC   + P+  G I   G   S A+    S+A+            
Sbjct:   200 TLVIFFGLGIGLALTPCVFPMYPILSGIIVGQGQKLSTAKAFTLSMAYVQGMAITYSILG 259

Query:   180 VGASFAGKAYGQIGTGLPLAASGLAI---VMGLNLLEIIELQLPSFF-DNFDPRAAAANF 235
             +  + AG  Y Q     P     LAI   V+ L++  + +L+LPS F +  +  +     
Sbjct:   260 LVVASAGMKY-QAALQHPAVLVVLAILFFVLSLSMFGLYDLKLPSRFQEKMNSISNNQKG 318

Query:   236 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAA 295
              + +  +L G+   L ASPC+T  L+  L YVA + D L G   L   + G   PLL+  
Sbjct:   319 GNLIGVFLMGVISGLVASPCTTAPLSGALVYVAQTGDLLQGFLALYVLSMGMGVPLLIIG 378

Query:   296 SFAGAL 301
             +  G L
Sbjct:   379 TSGGKL 384

GO:0003824 "catalytic activity" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=ISS

UNIPROTKB|Q5LS73 ccdA "Cytochrome c-type biogenesis protein CcdA" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 153 (58.9 bits), Expect = 5.3e-09, P = 5.3e-09
 Identities = 57/178 (32%), Positives = 79/178 (44%)

Query:   128 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXXXXVGA--SFA 185
             G+V+ LSPC L ++P  L Y+     G+ + Q      A             V     F 
Sbjct:    22 GIVSFLSPCVLPIVPPYLAYMSGVTLGEIQDQAAARRKATLAALFFVLGLSTVFLLLGFT 81

Query:   186 GKAYGQ-IGTGLPLAA--SGLA-IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSV-Q 240
               A+G  + +   L A  SG+  IV GL+ L +  + L    D  + R    +   SV  
Sbjct:    82 ASAFGAFVLSNQELFAKVSGVVVIVFGLHFLSVFRIPL---LDR-EARMQTGDAGGSVFG 137

Query:   241 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLS-YTTGYVAPLLLAASF 297
             AY+ GL FA   +PC  P L  +L  +A S+  +  GTLLL  Y  G   P LLAA F
Sbjct:   138 AYVLGLAFAFGWTPCIGPQLGAILS-LAASEASVARGTLLLGVYAAGLGVPFLLAAMF 194

GO:0003674 "molecular_function" evidence=ND

GO:0017004 "cytochrome complex assembly" evidence=ISS

TIGR_CMR|SPO_1896 SPO_1896 "cytochrome c-type biogenesis protein CcdA" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 153 (58.9 bits), Expect = 5.3e-09, P = 5.3e-09
 Identities = 57/178 (32%), Positives = 79/178 (44%)

Query:   128 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXXXXVGA--SFA 185
             G+V+ LSPC L ++P  L Y+     G+ + Q      A             V     F 
Sbjct:    22 GIVSFLSPCVLPIVPPYLAYMSGVTLGEIQDQAAARRKATLAALFFVLGLSTVFLLLGFT 81

Query:   186 GKAYGQ-IGTGLPLAA--SGLA-IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSV-Q 240
               A+G  + +   L A  SG+  IV GL+ L +  + L    D  + R    +   SV  
Sbjct:    82 ASAFGAFVLSNQELFAKVSGVVVIVFGLHFLSVFRIPL---LDR-EARMQTGDAGGSVFG 137

Query:   241 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLS-YTTGYVAPLLLAASF 297
             AY+ GL FA   +PC  P L  +L  +A S+  +  GTLLL  Y  G   P LLAA F
Sbjct:   138 AYVLGLAFAFGWTPCIGPQLGAILS-LAASEASVARGTLLLGVYAAGLGVPFLLAAMF 194

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=ISS

TIGR_CMR|CPS_0953 CPS_0953 "thiol:disulfide interchange protein DsbD" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 157 (60.3 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 58/239 (24%), Positives = 102/239 (42%)

Query:    67 AKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFG 126
             +K + +   + G ++    +D +     G    S   Q ++ +L Q S L  T +A   G
Sbjct:   146 SKVIKLSKFILGESTSAPSSDAAQQTNEGEVKKSEQHQLSD-MLKQDSLL-LTLIAFFVG 203

Query:   127 AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXXXXVGASFAG 186
              GL+ S +PC   + P+  G I   G G +  +    S  +            V  + AG
Sbjct:   204 -GLLLSFTPCVFPMYPILTGIIVGQGEGLTTKKAFTLSFFYVQGMAITYTLLGVVVAMAG 262

Query:   187 KAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYL 243
               +  +    P+   GL+I+   + L++  +  L LP+ + N     +      S+   L
Sbjct:   263 AKFQAVFQH-PIVLIGLSILFIFLALSMFGVFNLALPASWQNKLNNVSNKQKGGSITGVL 321

Query:   244 A-GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGAL 301
               G+   L ASPC+T  L   L Y++ + D ++G + L + + G   PLL+  S  G L
Sbjct:   322 MMGVISGLVASPCTTAPLTGALLYISQTGDVVLGASALYALSLGMGLPLLILGSSGGKL 380

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0009055 "electron carrier activity" evidence=ISS

GO:0047134 "protein-disulfide reductase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2QY07	CCDA2_ORYSJ	No assigned EC number	0.7087	0.8369	0.7513	yes	no
Q9M5P3	CCDA_ARATH	No assigned EC number	0.7185	0.9076	0.8333	yes	no
Q2RAR6	CCDA1_ORYSJ	No assigned EC number	0.7087	0.8369	0.7411	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027598001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (654 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	325
pfam02683	206	pfam02683, DsbD, Cytochrome C biogenesis protein t	7e-32
COG0785	220	COG0785, CcdA, Cytochrome c biogenesis protein [Po	2e-28
COG4232	569	COG4232, COG4232, Thiol:disulfide interchange prot	4e-20
PRK00293	571	PRK00293, dipZ, thiol:disulfide interchange protei	8e-12
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-04

>gnl|CDD|217183 pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region

 Score =  117 bits (296), Expect = 7e-32
 Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 8/188 (4%)

Query: 124 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGAS 183
            F AGL++ LSPC L ++P  L YI     G  +  ++  ++ F LGL+     LG GA+
Sbjct: 1   AFLAGLLSFLSPCILPLIPAYLSYISGVSLGDRKQGVLLKALLFVLGLSIVFLSLGYGAA 60

Query: 184 FAGKAYGQIGTGLPLAASGLAIVMGLNLLE---IIELQLPSFFDNFDPRAAAANFPSSVQ 240
           F G  +      L + A  + I+MGL+ L    I  L+                    + 
Sbjct: 61  FLGGLFRDYLGYLRVIAGIIVILMGLHFLGVFPIGFLRKLRL-----GHKKLKVEGPMLG 115

Query: 241 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGA 300
           A+L G+ FAL  +PC  P+LA++L   A+S   L+   LL+ Y  G   P LLA+ FAG+
Sbjct: 116 AFLLGMLFALGWTPCIGPILASVLALAASSGSLLLAALLLVVYVLGLGIPFLLASLFAGS 175

Query: 301 LQVVSCLL 308
           L  +  L 
Sbjct: 176 LLFLRWLR 183

This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family. Length = 206

>gnl|CDD|223856 COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]

 Score =  109 bits (274), Expect = 2e-28
 Identities = 64/188 (34%), Positives = 96/188 (51%), Gaps = 4/188 (2%)

Query: 114 SALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLAT 173
           + +   S+ + F AGL++ LSPC L +LP  L Y+   GS  +R  ++  S+ F LG AT
Sbjct: 6   ALVGTVSILLAFLAGLLSFLSPCVLPLLPAYLSYLAG-GSLGARKSVLLASLLFVLGFAT 64

Query: 174 TLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAA 233
              LLG+GAS  G         L   A  L I++GL  L ++ L L   F  F  +    
Sbjct: 65  VFVLLGIGASGLGAFLPLNRLYLRYIAGILLILLGLLFLGVLRLPLLLRFARFQLKGK-- 122

Query: 234 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLL 293
              +++ A+L GL FAL  +PC  P+L ++L   A++   ++G  LL +Y  G   P LL
Sbjct: 123 -SVTALGAFLLGLLFALGWTPCIGPILGSILALAASTGSVVLGALLLAAYALGLALPFLL 181

Query: 294 AASFAGAL 301
            A  +G  
Sbjct: 182 LALLSGRA 189

Length = 220

>gnl|CDD|226685 COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 90.5 bits (225), Expect = 4e-20
 Identities = 70/243 (28%), Positives = 97/243 (39%), Gaps = 32/243 (13%)

Query: 100 SAGQQANEAVLGQL--SALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSR 157
           +A QQ        L  S L        F  GL+ + +PC L +LPL  G +   GS K  
Sbjct: 153 AAEQQEGADSAATLKWSLLLA------FLGGLLLNFTPCVLPMLPLLSGIV--LGSAKRA 204

Query: 158 AQIIGDSIAFSLGL--ATTLALLGVGASFAGKAYGQIGTGL--PLAASGLAIVM---GLN 210
           ++     ++F      A    LLG+ A+ AG         L  P    GLA +     L+
Sbjct: 205 SKARAFGLSFVYVQGMALAYTLLGLVAAAAG---LGWQAQLQQPWVLGGLAALFVLLALS 261

Query: 211 LLEIIELQLP-SFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAT 269
           +  + ELQLP S       ++  A+  S V A+  G    L  SPC+ P LA  L Y+A 
Sbjct: 262 MFGLFELQLPSSLQTRLTQQSNRASGGSIVGAFFMGALAGLVVSPCTAPPLAGALLYIAQ 321

Query: 270 SKDPLIGGTLLLSYTTGYVAPLLLAASFAGAL--------QVVSCLLGLIYCVATTSPTW 321
           S + L+GG  L +   G   PLLL   F   L          V    G +         W
Sbjct: 322 SGNALLGGLALYALGLGMGLPLLLIGVFGNRLLPKPGPWMNTVKQAFGFVLLAT---AIW 378

Query: 322 ILT 324
           +L 
Sbjct: 379 LLW 381

Length = 569

>gnl|CDD|234717 PRK00293, dipZ, thiol:disulfide interchange protein precursor; Provisional

 Score = 65.6 bits (161), Expect = 8e-12
 Identities = 55/215 (25%), Positives = 85/215 (39%), Gaps = 30/215 (13%)

Query: 103 QQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIG 162
                     L++L ++ L   F  G+  + +PC L + P+  G +       S A+ + 
Sbjct: 152 PAPAGQATASLASLPWS-LLWFFLIGIGLAFTPCVLPMYPILSGIVLGGKQRLSTARALL 210

Query: 163 DSIAFSLGLATTLALLG-VGASFAGKAYGQIGTGLPLAA-----------SGLAIVMGLN 210
            S  +  G+A T  LLG V A+           GL   A           S L +++ L+
Sbjct: 211 LSFVYVQGMALTYTLLGLVVAAA----------GLQFQAALQHPYVLIGLSILFVLLALS 260

Query: 211 LLEIIELQLPSFF----DNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGY 266
           +  +  LQLPS           R    +       ++ G    L  SPC+T  L+  L Y
Sbjct: 261 MFGLFTLQLPSSLQTRLTLLSNRQQGGSLGG---VFVMGAISGLICSPCTTAPLSGALLY 317

Query: 267 VATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGAL 301
           +A S D L+GG  L     G   PL+L  +F   L
Sbjct: 318 IAQSGDLLLGGLTLYLLALGMGLPLILITTFGNKL 352

Length = 571

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 6/41 (14%)

Query: 140 VLPLTLGYI---GAFGSGKSRAQIIGDSIAFSLGLATTLAL 177
           V+P + G+    G  GSGKS    IGD+I F+LGL+++ A+
Sbjct: 18  VIPFSKGFTVISGPNGSGKSN---IGDAILFALGLSSSKAM 55

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.97
PF02683	211	DsbD: Cytochrome C biogenesis protein transmembran	99.97
COG0785	220	CcdA Cytochrome c biogenesis protein [Posttranslat	99.96
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	99.92
COG2836	232	Uncharacterized conserved protein [Function unknow	99.87
PF13386	199	DsbD_2: Cytochrome C biogenesis protein transmembr	99.86
PRK10019	279	nickel/cobalt efflux protein RcnA; Provisional	98.28
PF11139	214	DUF2910: Protein of unknown function (DUF2910); In	97.72
COG2215	303	ABC-type uncharacterized transport system, permeas	97.48
PF02683	211	DsbD: Cytochrome C biogenesis protein transmembran	97.29
COG0785	220	CcdA Cytochrome c biogenesis protein [Posttranslat	97.21
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	96.7
PF13386	199	DsbD_2: Cytochrome C biogenesis protein transmembr	95.53
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	95.28
PF03824	282	NicO: High-affinity nickel-transport protein; Inte	95.07
PRK10019	279	nickel/cobalt efflux protein RcnA; Provisional	93.43
PF01914	203	MarC: MarC family integral membrane protein; Inter	93.11
PRK10995	221	inner membrane protein; Provisional	93.06
PRK11111	214	hypothetical protein; Provisional	92.08
TIGR00427	201	membrane protein, MarC family. MarC is a protein t	90.07
PF09948	191	DUF2182: Predicted metal-binding integral membrane	89.86
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	88.38
PRK10739	197	putative antibiotic transporter; Provisional	86.66
COG2215	303	ABC-type uncharacterized transport system, permeas	85.02
TIGR00802	280	nico high-affinity nickel-transporter, HoxN/HupN/N	84.49
PF09930	224	DUF2162: Predicted transporter (DUF2162); InterPro	82.32
PRK10520	205	rhtB homoserine/homoserine lactone efflux protein;	80.38

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.97  E-value=1.1e-29  Score=261.83  Aligned_cols=206  Identities=26%  Similarity=0.346  Sum_probs=166.7

Q ss_pred             ccHHHHHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--h
Q 020530          116 LSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQI--G  193 (325)
Q Consensus       116 ~s~~~l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~--~  193 (325)
                      ..+..++.+|++|++++++||++||+|++.+++.+.+++++|++.+..++.|++|++++|+++|++++.+|..++..  +
T Consensus       164 ~~~~~l~~afl~Glll~l~PCvlP~lpi~~~~~~~~~~~~~~~~~~~~~l~y~lG~~~ty~~lG~~a~~~G~~~~~~~q~  243 (571)
T PRK00293        164 SLPWSLLWFFLIGIGLAFTPCVLPMYPILSGIVLGGKQRLSTARALLLSFVYVQGMALTYTLLGLVVAAAGLQFQAALQH  243 (571)
T ss_pred             cchHHHHHHHHHHHHHhccchhhHhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34678999999999999999999999999999876432245677888999999999999999999999999877643  3


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhcccccc-CCchhhhhcCCCChhhhhHhhHhhhhccCCCChHHHHHHHHHHhccCC
Q 020530          194 TGLPLAASGLAIVMGLNLLEIIELQLPSFFD-NFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKD  272 (325)
Q Consensus       194 ~~l~ii~GvllIl~GL~lLg~~~l~lp~~~~-~l~~~~~~~~~~~~~gafllGll~GL~~~PC~~PvL~aiL~~Aaasgs  272 (325)
                      .++.++.+++++++|+.++|.+++++|.... +++...++.+.++..++|++|+++|++|+||++|++++++++++.+++
T Consensus       244 ~~~~~~~~~l~v~lgL~~~G~~~l~lp~~~~~~~~~~~~~~~~~~~~gaf~~G~l~~l~~~PC~~p~L~~~L~~aa~tg~  323 (571)
T PRK00293        244 PYVLIGLSILFVLLALSMFGLFTLQLPSSLQTRLTLLSNRQQGGSLGGVFVMGAISGLICSPCTTAPLSGALLYIAQSGD  323 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHhcceeccCcHHHHHHhhhhhhcccCCchHhHHHHHHHHHHHhCCCchHHHHHHHHHHHccCc
Confidence            4677888999999999999998877765432 222222223456789999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------h-hhh------hhHHhhhccccc
Q 020530          273 PLIGGTLLLSYTTGYVAPLLLAASFAGALQVVS-------C-LLG------LIYCVATTSPTW  321 (325)
Q Consensus       273 ~l~G~llml~FgLG~~lPLll~~~~~g~L~~l~-------~-l~~------~~~~~~~~~~~~  321 (325)
                      ++.|+++|++||+|+++|+++++.+.+++....       + ..|      .+|++...+|++
T Consensus       324 ~~~g~~~l~~~gLG~~~Plll~~~~~~~~lpk~g~wm~~~k~~~G~~ll~~~~~ll~~~~~~~  386 (571)
T PRK00293        324 LLLGGLTLYLLALGMGLPLILITTFGNKLLPKSGPWMNQVKTAFGFVLLALPVFLLERVLPGV  386 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            999999999999999999999998887652211       1 112      666677777764

>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation

Probab=99.97  E-value=3.8e-29  Score=227.12  Aligned_cols=178  Identities=42%  Similarity=0.606  Sum_probs=150.6

Q ss_pred             HHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHH
Q 020530          124 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQ----IIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLA  199 (325)
Q Consensus       124 aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~----~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~ii  199 (325)
                      +|++|+++++|||++|++|++++++.+++++ +|++    .+..++.|.+|+.++|..+|..++.+|+.+++..++++++
T Consensus         1 af~aGll~~~sPC~lp~lp~~l~~~~~~~~~-~~~~~~~~~~~~~l~f~~G~~~~~~~lG~~~~~~g~~~~~~~~~~~~i   79 (211)
T PF02683_consen    1 AFLAGLLSSFSPCVLPVLPLYLSYIAGSGAS-SRRKGKRVALLLGLAFVLGFALVFALLGLGAGALGSFFGQISPWLYII   79 (211)
T ss_pred             ChHHHHHHhcCcHHHHHHHHHHHHHhCCCcc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999865422 2222    4789999999999999999999999999998888899999


Q ss_pred             HHHHHHHHHHHHHHHhhhhccccccCCchhhhhcCCCChhhhhHhhHhhhhccCCCChHHHHHHHHHHhccCChhHHHHH
Q 020530          200 ASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTL  279 (325)
Q Consensus       200 ~GvllIl~GL~lLg~~~l~lp~~~~~l~~~~~~~~~~~~~gafllGll~GL~~~PC~~PvL~aiL~~Aaasgs~l~G~ll  279 (325)
                      .|++++++|+.+++.++.+.+...+.. .+.+++++++..++|++|+.+|++|+||++|++.+++.++++++|+..|..+
T Consensus        80 ~g~~~i~~Gl~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~gaf~lG~~~~l~~~PC~~p~l~~il~~a~~~~~~~~~~~l  158 (211)
T PF02683_consen   80 AGVLLILFGLSLLGLFEIPFLSRPRLG-LRSKRKSGGGLLGAFLLGLLFGLVWSPCTGPILAAILALAASSGSVLQGLLL  158 (211)
T ss_pred             HHHHHHHHHHHHHHhhcchhhhhhhhh-hhhhcCCCCCcccHHHHHHHHHHHhhhcchHHHHHHHHHHHcCCchHHHHHH
Confidence            999999999999988774433322111 1112234456789999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHH
Q 020530          280 LLSYTTGYVAPLLLAASFAGALQV  303 (325)
Q Consensus       280 ml~FgLG~~lPLll~~~~~g~L~~  303 (325)
                      +++|++|+++|+++++.+.+++++
T Consensus       159 l~~y~lG~~lPll~~~~~~~~~~~  182 (211)
T PF02683_consen  159 LLAYGLGFGLPLLLIGLFSGSLLR  182 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987763

DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane

>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=5.6e-28  Score=222.81  Aligned_cols=182  Identities=34%  Similarity=0.529  Sum_probs=161.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHH
Q 020530          118 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLP  197 (325)
Q Consensus       118 ~~~l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~  197 (325)
                      ...+..+|++|+++++|||++|++|.++++..... .++|++.+.+++.|.+|..++|..+|+.++.+|+.+...+++++
T Consensus        10 ~~~~~~aflaGlls~lSPCilpllP~~l~~~~~~~-~~~r~~~~~~~l~FvlG~~~vf~~lG~~~~~~~~~~~~~~~~l~   88 (220)
T COG0785          10 TVSILLAFLAGLLSFLSPCVLPLLPAYLSYLAGGS-LGARKSVLLASLLFVLGFATVFVLLGIGASGLGAFLPLNRLYLR   88 (220)
T ss_pred             hhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35688999999999999999999999999987643 23377888999999999999999999999999999998888999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCchhhhhcCCCChhhhhHhhHhhhhccCCCChHHHHHHHHHHhccCChhHHH
Q 020530          198 LAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGG  277 (325)
Q Consensus       198 ii~GvllIl~GL~lLg~~~l~lp~~~~~l~~~~~~~~~~~~~gafllGll~GL~~~PC~~PvL~aiL~~Aaasgs~l~G~  277 (325)
                      ++.|++++++|+++++..+.+.+.+..+++.+   .+..+..++|.+|+.++++|+||.+|++.++++.++.+++...|.
T Consensus        89 ~i~gi~li~~Gl~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~f~lGl~f~~~wtPC~gPil~sil~laa~~~~~~~g~  165 (220)
T COG0785          89 YIAGILLILLGLLFLGVLRLPLLLRFARFQLK---GKSVTALGAFLLGLLFALGWTPCIGPILGSILALAASTGSVVLGA  165 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhhhc---cCCCcchhHHHHHHHHHHHhccchhHHHHHHHHHHhcCCcHHHHH
Confidence            99999999999999998876665544443221   235678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHH
Q 020530          278 TLLLSYTTGYVAPLLLAASFAGALQV  303 (325)
Q Consensus       278 llml~FgLG~~lPLll~~~~~g~L~~  303 (325)
                      .+|++|++|+++|+++++.+.++..+
T Consensus       166 ~ll~~Y~lGl~lP~~~~~~~~~~~~~  191 (220)
T COG0785         166 LLLAAYALGLALPFLLLALLSGRALK  191 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999876

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.92  E-value=7.9e-25  Score=222.90  Aligned_cols=182  Identities=32%  Similarity=0.496  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-hh-hhH
Q 020530          119 TSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ-IG-TGL  196 (325)
Q Consensus       119 ~~l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~-~~-~~l  196 (325)
                      .+++.+|++|++-.|+||++||+|+..+.+.+..++.+++|....+..|+.|+.++|+++|+.++..|..++. .| .|+
T Consensus       168 ~~ll~afl~GLlL~ftPCVLPmlpl~s~~v~g~~~~~s~~ra~~Ls~~yv~~mALay~~lgl~~~~~gl~~q~qLQ~P~v  247 (569)
T COG4232         168 WSLLLAFLGGLLLNFTPCVLPMLPLLSGIVLGSAKRASKARAFGLSFVYVQGMALAYTLLGLVAAAAGLGWQAQLQQPWV  247 (569)
T ss_pred             HHHHHHHHHHHHHhhccHhhhhHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhHhHcccHH
Confidence            4599999999999999999999999999887654445666777889999999999999999999998877663 33 344


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccC-CchhhhhcCCCChhhhhHhhHhhhhccCCCChHHHHHHHHHHhccCChhH
Q 020530          197 PLAASGLAIVMGLNLLEIIELQLPSFFDN-FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLI  275 (325)
Q Consensus       197 ~ii~GvllIl~GL~lLg~~~l~lp~~~~~-l~~~~~~~~~~~~~gafllGll~GL~~~PC~~PvL~aiL~~Aaasgs~l~  275 (325)
                      -....+++++++++|+|.+++++|+..+. +....++.+.++..|+|++|++-+++.+||++|.++++|.|+++++|.+.
T Consensus       248 l~~la~lf~llALSMfGlFelqlP~s~q~~l~~~S~~~~gG~~~GaF~mG~La~Lv~sPCt~ppLa~aL~Yiaqsg~~~~  327 (569)
T COG4232         248 LGGLAALFVLLALSMFGLFELQLPSSLQTRLTQQSNRASGGSIVGAFFMGALAGLVVSPCTAPPLAGALLYIAQSGNALL  327 (569)
T ss_pred             HHHHHHHHHHHHHHhhhheeecCcHHHhhHHhhhhcccCCCchHHHHHHHHHHHHhcCcCcchhHHHHHHHHHhcchHHH
Confidence            45567788999999999999999986543 33333344555589999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHH
Q 020530          276 GGTLLLSYTTGYVAPLLLAASFAGA  300 (325)
Q Consensus       276 G~llml~FgLG~~lPLll~~~~~g~  300 (325)
                      |...+.++|+||++|+++++++..+
T Consensus       328 g~~~l~al~LGMg~Plllv~~f~~~  352 (569)
T COG4232         328 GGLALYALGLGMGLPLLLIGVFGNR  352 (569)
T ss_pred             HHHHHHHHHHhcccchhhheecccc
Confidence            9999999999999999999988843

>COG2836 Uncharacterized conserved protein [Function unknown]

Probab=99.87  E-value=3.8e-21  Score=176.59  Aligned_cols=180  Identities=23%  Similarity=0.300  Sum_probs=140.1

Q ss_pred             HHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---hhhhHH
Q 020530          121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ---IGTGLP  197 (325)
Q Consensus       121 l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~---~~~~l~  197 (325)
                      ++.+|++|++++ .||+.+|.|+..++......+++++ .++.++.|++||+++|+++|++.+.+|..+.+   .+.+.+
T Consensus         6 ~l~~~~~g~lg~-gHC~gMCGGi~~afs~~~~~~~~~~-~~~~~~lyNlGRi~SYallG~i~G~lG~~l~~~~~~~~~l~   83 (232)
T COG2836           6 FLGIFLLGLLGG-GHCLGMCGGIVLAFSLLIPSKVSSS-RLKLHLLYNLGRILSYALLGAILGALGVSLGQSAGLRGVLF   83 (232)
T ss_pred             HHHHHHHHHhcC-ccHHHhcchHHHHHHHhccccchHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444888898877 5999999999988876543222322 38889999999999999999999999977654   456789


Q ss_pred             HHHHHHHHHHHHHHHHH---hhh--hccccc----cCCchhhhhcCCCChhhhhHhhHhhhhccCCCChHHHHHHHHHHh
Q 020530          198 LAASGLAIVMGLNLLEI---IEL--QLPSFF----DNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVA  268 (325)
Q Consensus       198 ii~GvllIl~GL~lLg~---~~l--~lp~~~----~~l~~~~~~~~~~~~~gafllGll~GL~~~PC~~PvL~aiL~~Aa  268 (325)
                      +++|+++|++|+.++..   .+.  ++|...    +.+++. +..+.++..+.+++|+++|  |.||.  ++|+.+++|.
T Consensus        84 i~ag~~li~lGL~l~~~~~~~~~~~~~p~i~~~~~~~l~~~-r~l~~~~~~~~~~lG~~wG--~lPCG--lVYs~l~~A~  158 (232)
T COG2836          84 IIAGALLIALGLYLLARGGMWSGALKLPFIGGFLWRLLKPI-RLLPLKPLPGALFLGMLWG--LLPCG--LVYSALAYAL  158 (232)
T ss_pred             HHHHHHHHHHHHHHhcccchhhHHhhchhcchHHHHhhhhh-hccccCcchHHHHHHHHhc--ccchH--HHHHHHHHHH
Confidence            99999999999999532   221  223211    112210 1234455789999999999  56996  7888899999


Q ss_pred             ccCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 020530          269 TSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQVVSCL  307 (325)
Q Consensus       269 asgs~l~G~llml~FgLG~~lPLll~~~~~g~L~~l~~l  307 (325)
                      .++|+.+|+++|++||+||..+++..+.+.+++++..|.
T Consensus       159 ~tgS~~~Gal~mlaFGlGTlP~ll~~G~~s~~~s~~~r~  197 (232)
T COG2836         159 STGSAFEGALVMLAFGLGTLPNLLAMGIFSSKLSKSSRK  197 (232)
T ss_pred             HcCCHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988899999999999877664

>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region

Probab=99.86  E-value=1.2e-20  Score=170.23  Aligned_cols=173  Identities=27%  Similarity=0.353  Sum_probs=127.3

Q ss_pred             HHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh------hhHH
Q 020530          124 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIG------TGLP  197 (325)
Q Consensus       124 aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~------~~l~  197 (325)
                      +|+.|+++++ ||+.+|.|+..++..++    +| +.+ ..+.|++||+++|+++|++++.+|+.+....      ....
T Consensus         2 a~~~Gl~gs~-hC~~mCg~~~~~~~~~~----~~-~~~-~~l~y~~GRi~sY~llG~l~g~~G~~l~~~~~~~~l~~~~~   74 (199)
T PF13386_consen    2 AFLLGLLGSL-HCIGMCGPIALALSLSQ----PK-RWL-RHLLYNLGRILSYTLLGALAGLLGSGLSLSGWLPGLRRIIG   74 (199)
T ss_pred             HHHHHHHHhh-hHHHhHHHHHHHHhccC----cc-cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            7899999999 99999999999986542    22 234 6899999999999999999999999886432      2334


Q ss_pred             HHHHHHHHHHHHHHHHHhhhh-ccccccCCchhhhh-cCC-CChhhhhHhhHhhhhccCCCChHHHHHHHHHHhccCChh
Q 020530          198 LAASGLAIVMGLNLLEIIELQ-LPSFFDNFDPRAAA-ANF-PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL  274 (325)
Q Consensus       198 ii~GvllIl~GL~lLg~~~l~-lp~~~~~l~~~~~~-~~~-~~~~gafllGll~GL~~~PC~~PvL~aiL~~Aaasgs~l  274 (325)
                      ++.+.+++++|+.++...+.+ .+...+...++.++ .++ ++..++|.+|+++|+.  ||.  +++.++..++.++|+.
T Consensus        75 ~~~~~~~l~~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~l~gll--PCg--~~y~~l~~A~~s~s~~  150 (199)
T PF13386_consen   75 ILLGLLGLFLGLRLLGGPRLPKLGRLGHGLARRLQPLLRKLKGPWGAFLLGFLNGLL--PCG--PVYFALALAAASGSPL  150 (199)
T ss_pred             HHHHHHHHHHHHHHHhccchhhHHhccHHHHHHhHHHHHhcCCccHHHHHHHHHHHh--HHH--HHHHHHHHHHHcCChH
Confidence            555556666677766322111 11000111111111 122 6788999999999975  994  5667788899999999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 020530          275 IGGTLLLSYTTGYVAPLLLAASFAGALQVVSCL  307 (325)
Q Consensus       275 ~G~llml~FgLG~~lPLll~~~~~g~L~~l~~l  307 (325)
                      .|+++|++|++|+.+|+++++...+++++..+.
T Consensus       151 ~G~l~m~~FgLGT~p~ll~~~~~~~~l~~~~~~  183 (199)
T PF13386_consen  151 YGALLMLAFGLGTLPALLLAGLLAGKLSRRLRR  183 (199)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988899999888888776653

>PRK10019 nickel/cobalt efflux protein RcnA; Provisional

Probab=98.28  E-value=0.00024  Score=68.33  Aligned_cols=181  Identities=18%  Similarity=0.179  Sum_probs=116.0

Q ss_pred             HHHHHhhccccHHHHHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020530          107 EAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAG  186 (325)
Q Consensus       107 ~~v~~~l~~~s~~~l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG  186 (325)
                      +++|+.   .-+.-+..+|+.|++=.+.|=-.=  .++.+|+.+.  +++.++.+..++.-.++=+.+-.+++.+.-.+.
T Consensus         6 ~~~~~~---~~~~l~~~~f~yG~~HAlgPGHGK--avi~sYlv~~--~~~~~~a~~lgl~~~l~hta~~lv~~~~~~~l~   78 (279)
T PRK10019          6 TLLQQG---NAWFFIPSAILLGALHGLEPGHSK--TMMAAFIIAI--KGTIKQAVMLGLAATISHTAVVWLIAFGGMYLS   78 (279)
T ss_pred             HHHHcc---hHHHHHHHHHHHHHHHhcCCCcch--HHHhhhhhcC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445544   236778889999999999886643  3456787653  345556677777777776665555655544445


Q ss_pred             HHHHH--hhhhHHHHHHHHHHHHHHHHHHHh-hhhc-----cc--cccC---------------------------Cchh
Q 020530          187 KAYGQ--IGTGLPLAASGLAIVMGLNLLEII-ELQL-----PS--FFDN---------------------------FDPR  229 (325)
Q Consensus       187 ~~l~~--~~~~l~ii~GvllIl~GL~lLg~~-~l~l-----p~--~~~~---------------------------l~~~  229 (325)
                      +.+..  ...++..+.+++++.+|+.++-+. +-+.     +.  .-+.                           .++.
T Consensus        79 ~~~~~~~~~~~le~~S~~lii~lGl~ll~r~~r~~~~~~~~~h~~~h~h~h~h~h~~~c~~~~~~~~~~~~gh~h~~~~~  158 (279)
T PRK10019         79 RRFTAQSAEPWLQLISAVIIISTAFWMFWRTWRGERNWLENMHHHDHDHDHDHDHEHHHDHGHHHHHEHGATAEEYQDAH  158 (279)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccCCCCCCCcCccccccccccccccccCCCCHH
Confidence            54442  456788899999999999998321 1100     00  0000                           0000


Q ss_pred             ---------hhhcC-CCChhhhhHhhHhhhhccCCCChHHHHHHHHHHhccCChhHHHHHHHHHHhhHHHHHHHHHHHH
Q 020530          230 ---------AAAAN-FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFA  298 (325)
Q Consensus       230 ---------~~~~~-~~~~~gafllGll~GL~~~PC~~PvL~aiL~~Aaasgs~l~G~llml~FgLG~~lPLll~~~~~  298 (325)
                               .+... ..+..+.+.+|+.-|+.  ||.+.++.  |..+.+.+.+..|+++.++|++|+++-+..++...
T Consensus       159 ~~~~a~~~r~~~~~~~~~~~~~l~igl~~Gl~--PCpgAl~V--LL~a~~lg~~~~Gi~~vlafslGtaltm~~vgll~  233 (279)
T PRK10019        159 ERAHANDIKRRFDGREVTNGQILLFGLTGGLI--PCPAAITV--LLICIQLKALTLGATLVLSFSIGLALTLVTVGVGA  233 (279)
T ss_pred             HhhccchhhhhhcccccccchhhHHHHHhccC--CCHHHHHH--HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     00000 11223346889999975  99876554  44566778999999999999999999998888776

>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed

Probab=97.72  E-value=0.0021  Score=58.81  Aligned_cols=143  Identities=17%  Similarity=0.085  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------hhhhHHHHHHHHHHHHHHHHHHHhhhhccccccCCchhhhhc
Q 020530          162 GDSIAFSLGLATTLALLGVGASFAGKAYGQ--------IGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAA  233 (325)
Q Consensus       162 ~~~l~F~lG~i~ty~lLG~la~~lG~~l~~--------~~~~l~ii~GvllIl~GL~lLg~~~l~lp~~~~~l~~~~~~~  233 (325)
                      .+.++|.+|...+|...|++.-........        ...++.++.|++++++|...+..-+  -+....+..+...+.
T Consensus        29 ~~~~af~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lGv~ll~~a~~~~~~~~--~~~~~~~~~~~~~~~  106 (214)
T PF11139_consen   29 RNLLAFLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQLVLGVLLLLLAVRVWRRRP--RPDPPSRPPRWLARL  106 (214)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHHHHHHHHHHHHHHHhhccc--ccCCCCCchhhhhhh
Confidence            457999999999999999988766655441        2245677888888888887763320  011111111111222


Q ss_pred             CCCChhhhhHhhHhhhhccCCCChHHHHHHHHHHhccCChhHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHh
Q 020530          234 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPL----LLAASFAGALQVVSC  306 (325)
Q Consensus       234 ~~~~~~gafllGll~GL~~~PC~~PvL~aiL~~Aaasgs~l~G~llml~FgLG~~lPL----ll~~~~~g~L~~l~~  306 (325)
                      +.....+.+.+|+..++.-.+...|++.++.......-++..-...+..|.+-+..|.    +.......+.++.++
T Consensus       107 ~~~~~~~~~~lg~~~~~~~~~~~~~~laa~~~I~~~~~~~~~~~~~l~~y~~i~~~~~~~pll~~~~~~~r~~~~l~  183 (214)
T PF11139_consen  107 DSASPGGAFWLGFVLGLANPKTMLPYLAAIAIIAASGLSPGTQVVALVVYCLIASLPALLPLLAYLVAPERAEPWLE  183 (214)
T ss_pred             hcCCchhHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3455677899999999988888777776665555666666777888888888777664    333344555544444

Currently no function for this family is known.

>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=97.48  E-value=0.071  Score=51.88  Aligned_cols=179  Identities=23%  Similarity=0.233  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHH--HHHHHHHHHHHHHHHHHHH-hHH--HHHh
Q 020530          118 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIA--FSLGLATTLALLGVGASFA-GKA--YGQI  192 (325)
Q Consensus       118 ~~~l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~--F~lG~i~ty~lLG~la~~l-G~~--l~~~  192 (325)
                      ++.+...|+-|++-.+.|=-.=.  +..+|+.+.+  .+-++.+..+++  ..=|. +.+.+++++.+.. +..  +...
T Consensus        55 w~li~~SflyGvlHAlgPGHgKa--viasylia~~--~~lk~~ilLsf~~sllqG~-~Av~l~~~~~~v~~~~s~~~~~s  129 (303)
T COG2215          55 WTLIPLSFLYGVLHALGPGHGKA--VIATYLIAHK--ATLKRAILLSFLASLLQGL-TAVVLLLAFLGVLRLSSITFALS  129 (303)
T ss_pred             HHHHHHHHHHHHHhccCCCcchH--HHHHHHHhcc--cchhHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHhhhhHHhhh
Confidence            57888999999999999877442  2456766532  222233322222  11122 2233333333322 232  2345


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHH-hh-h--hccc--ccc---------------------CCchhhhhcCCCChhhhhHhh
Q 020530          193 GTGLPLAASGLAIVMGLNLLEI-IE-L--QLPS--FFD---------------------NFDPRAAAANFPSSVQAYLAG  245 (325)
Q Consensus       193 ~~~l~ii~GvllIl~GL~lLg~-~~-l--~lp~--~~~---------------------~l~~~~~~~~~~~~~gafllG  245 (325)
                      ..++.++..++++.+|+.++=+ .+ .  +-|.  ...                     ..|++. ..+.......+..|
T Consensus       130 ~~~lE~~S~~Ll~~~G~w~~~r~lr~l~~~~~~~~~~~~~~~~~~~h~H~~~~~Cgh~H~~d~~~-~~~~~~~~~~~~~~  208 (303)
T COG2215         130 EPWLELISFLLLILLGLWLLWRTLRRLRHRHPKHPHFAAHPHPDHDHDHHYQCACGHAHAPDPKR-LGQAVDWKQQWLFG  208 (303)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccccCCCcccCCccccccccccccCCChHH-hcccccHHHHHHHH
Confidence            5778888888999999888721 11 1  0011  000                     011111 11223344568888


Q ss_pred             HhhhhccCCCChHHHHHHHHHHhccCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 020530          246 LTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQVVSC  306 (325)
Q Consensus       246 ll~GL~~~PC~~PvL~aiL~~Aaasgs~l~G~llml~FgLG~~lPLll~~~~~g~L~~l~~  306 (325)
                      +..|+  .||.+.+..  |..+.+.+-+..|++.-+++++|+++++-.++...-..|....
T Consensus       209 l~~GL--rPCpgAi~V--Llfal~~gl~~~Gil~VlamS~GtalTvs~lA~~av~ak~~a~  265 (303)
T COG2215         209 LTGGL--RPCPGAIFV--LLFALSLGLYTLGILSVLAMSIGTALTVSALALLAVTAKNTAV  265 (303)
T ss_pred             HHhcC--ccCcHHHHH--HHHHHHhchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            88886  599976543  5667777889999999999999999998777776666554443

>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation

Probab=97.29  E-value=0.0038  Score=56.85  Aligned_cols=88  Identities=27%  Similarity=0.288  Sum_probs=65.5

Q ss_pred             HHHHHHHHhhcC--CCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHhhhhH
Q 020530          122 AVIFGAGLVTSL--SPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKA---YGQIGTGL  196 (325)
Q Consensus       122 ~~aFlaGLltsl--sPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~---l~~~~~~l  196 (325)
                      ..+|+.|+..++  +||+.|++-.++.+...+   ++..+....-+.|.+|+.+-+.+++.....+.+.   +..+.+++
T Consensus       118 ~gaf~lG~~~~l~~~PC~~p~l~~il~~a~~~---~~~~~~~~ll~~y~lG~~lPll~~~~~~~~~~~~~~~~~~~~~~i  194 (211)
T PF02683_consen  118 LGAFLLGLLFGLVWSPCTGPILAAILALAASS---GSVLQGLLLLLAYGLGFGLPLLLIGLFSGSLLRRLRKLRRWSRWI  194 (211)
T ss_pred             ccHHHHHHHHHHHhhhcchHHHHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555554422  699999998888887643   2333556677899999999999999888876633   34566778


Q ss_pred             HHHHHHHHHHHHHHHH
Q 020530          197 PLAASGLAIVMGLNLL  212 (325)
Q Consensus       197 ~ii~GvllIl~GL~lL  212 (325)
                      +.+.|++++.+|+.++
T Consensus       195 ~~~~G~lli~~g~~~l  210 (211)
T PF02683_consen  195 KRISGILLIALGLYLL  210 (211)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999874

DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane

>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.0028  Score=58.96  Aligned_cols=90  Identities=26%  Similarity=0.270  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHhhcC--CCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHh
Q 020530          119 TSLAVIFGAGLVTSL--SPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGK----AYGQI  192 (325)
Q Consensus       119 ~~l~~aFlaGLltsl--sPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~----~l~~~  192 (325)
                      .+....|+.|+..++  +||+.|.+...+......   ++-.+.......|++|..+.|..++...+.+.+    .+..+
T Consensus       124 ~~~~~~f~lGl~f~~~wtPC~gPil~sil~laa~~---~~~~~g~~ll~~Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~  200 (220)
T COG0785         124 VTALGAFLLGLLFALGWTPCIGPILGSILALAAST---GSVVLGALLLAAYALGLALPFLLLALLSGRALKAFSRKLRRH  200 (220)
T ss_pred             CcchhHHHHHHHHHHHhccchhHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667777776544  699999998888776542   233456778899999999999999999887776    33456


Q ss_pred             hhhHHHHHHHHHHHHHHHH
Q 020530          193 GTGLPLAASGLAIVMGLNL  211 (325)
Q Consensus       193 ~~~l~ii~GvllIl~GL~l  211 (325)
                      .+.+..+.|++++++|+.+
T Consensus       201 ~~~i~~~~G~lli~~Gv~l  219 (220)
T COG0785         201 SGAIEIVGGALLILLGLLL  219 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            6778999999999999865

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=96.70  E-value=0.007  Score=63.49  Aligned_cols=90  Identities=22%  Similarity=0.172  Sum_probs=64.6

Q ss_pred             HHHHHHHHHhhcCC--CCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHH
Q 020530          121 LAVIFGAGLVTSLS--PCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPL  198 (325)
Q Consensus       121 l~~aFlaGLltsls--PCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~i  198 (325)
                      +..+|+.|++.++.  ||+.|.+...+.+....   .+-......-++|.+|+..-|.++|...+.+-...+.+...+..
T Consensus       289 ~~gaf~~G~l~~l~~~PC~~p~L~~~L~~aa~t---g~~~~g~~~l~~~gLG~~~Plll~~~~~~~~lpk~g~wm~~~k~  365 (571)
T PRK00293        289 LGGVFVMGAISGLICSPCTTAPLSGALLYIAQS---GDLLLGGLTLYLLALGMGLPLILITTFGNKLLPKSGPWMNQVKT  365 (571)
T ss_pred             hHhHHHHHHHHHHHhCCCchHHHHHHHHHHHcc---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHH
Confidence            56788889988776  99999888888886532   23334455668899999999999987653221111233345678


Q ss_pred             HHHHHHHHHHHHHHH
Q 020530          199 AASGLAIVMGLNLLE  213 (325)
Q Consensus       199 i~GvllIl~GL~lLg  213 (325)
                      +.|++++.+|+.++.
T Consensus       366 ~~G~~ll~~~~~ll~  380 (571)
T PRK00293        366 AFGFVLLALPVFLLE  380 (571)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            899999999999874

>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region

Probab=95.53  E-value=0.13  Score=46.46  Aligned_cols=82  Identities=24%  Similarity=0.183  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHH
Q 020530          120 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLA  199 (325)
Q Consensus       120 ~l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~ii  199 (325)
                      .....|..|++.++.||- ++.+.......    ..+-.+....-+.|.+|.+..+..+|.+...+++...   +.+..+
T Consensus       117 ~~~~~~~lG~l~gllPCg-~~y~~l~~A~~----s~s~~~G~l~m~~FgLGT~p~ll~~~~~~~~l~~~~~---~~~~r~  188 (199)
T PF13386_consen  117 GPWGAFLLGFLNGLLPCG-PVYFALALAAA----SGSPLYGALLMLAFGLGTLPALLLAGLLAGKLSRRLR---RRLLRL  188 (199)
T ss_pred             CccHHHHHHHHHHHhHHH-HHHHHHHHHHH----cCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            356788889999999995 44444332222    1244466778899999999999999988877766544   233347


Q ss_pred             HHHHHHHHHH
Q 020530          200 ASGLAIVMGL  209 (325)
Q Consensus       200 ~GvllIl~GL  209 (325)
                      .+++++++|+
T Consensus       189 ~g~~~i~~G~  198 (199)
T PF13386_consen  189 AGVLLIILGI  198 (199)
T ss_pred             HHHHHHHHHH
Confidence            7888888876

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=95.28  E-value=1.1  Score=39.59  Aligned_cols=140  Identities=17%  Similarity=0.088  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHH-H---HhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccCCchhhhhcCCC
Q 020530          161 IGDSIAFSLGLATTLALLGVGASFAGKAY-G---QIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFP  236 (325)
Q Consensus       161 l~~~l~F~lG~i~ty~lLG~la~~lG~~l-~---~~~~~l~ii~GvllIl~GL~lLg~~~l~lp~~~~~l~~~~~~~~~~  236 (325)
                      .+.++.+.+|..+...+...++...-..+ .   ....++.++.+..++.+|..++..-+    +..  .++ .+..+..
T Consensus        23 ~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~----~~~--~~~-~~~~~~~   95 (191)
T PF01810_consen   23 FKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKF----SSK--SST-QSEAKKQ   95 (191)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhccc----Ccc--hhh-hhhhccc
Confidence            45578888888888888876665433333 2   34456788888889999998873211    000  000 0011134


Q ss_pred             ChhhhhHhhHhhhhccCCCChHHHHHHHHHHhc-cCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 020530          237 SSVQAYLAGLTFALAASPCSTPVLATLLGYVAT-SKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQVVSCLL  308 (325)
Q Consensus       237 ~~~gafllGll~GL~~~PC~~PvL~aiL~~Aaa-sgs~l~G~llml~FgLG~~lPLll~~~~~g~L~~l~~l~  308 (325)
                      +....|..|+...+. -|=+-+...+++..... ..+...-....+...++....+...+...++.++..+.+
T Consensus        96 ~~~~~f~~g~~~~~~-NPk~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  167 (191)
T PF01810_consen   96 SKSKSFLTGFLLNLL-NPKAILFWLAVFPQFISPEYSSTQFLVFILGIFLGSLLWFLLLALLGSRLRRKFSSR  167 (191)
T ss_pred             cHHHHHHHHHHHHHH-hHHHHHHHHHhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            566778888888874 56554444444443333 222233344445666666677778888888887777654

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease

Probab=95.07  E-value=3.2  Score=39.40  Aligned_cols=65  Identities=18%  Similarity=0.216  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 020530          119 TSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ  191 (325)
Q Consensus       119 ~~l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~  191 (325)
                      ..+.++|+.|+.=.+.|=-+-.+  ..+|..+.      ++..+.++.+.+|-.++-.+.++++..++..+.+
T Consensus         3 ~ll~laf~~G~~HAl~PgH~kai--~~~~~~~~------~~~~~~g~~~~lg~s~~~~~~ai~lv~~~~~~~~   67 (282)
T PF03824_consen    3 SLLLLAFLYGLLHALGPGHGKAI--IASYLLSS------RRALRVGLFFGLGHSLTHGLSAILLVLLALWLSE   67 (282)
T ss_pred             HHHHHHHHHHHHHccCCChHHHH--HHHHHhhc------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            56788999999999999777666  55665532      2234568888888888888888777766655543

Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10019 nickel/cobalt efflux protein RcnA; Provisional

Probab=93.43  E-value=0.95  Score=43.83  Aligned_cols=84  Identities=27%  Similarity=0.313  Sum_probs=59.7

Q ss_pred             HHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HH---HHhh---hhH
Q 020530          124 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGK-AY---GQIG---TGL  196 (325)
Q Consensus       124 aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~-~l---~~~~---~~l  196 (325)
                      .+..|+..++-||...+.-+++++..+     .-...+...++|.+|.+.+.+.+|.+++...+ ..   ....   +..
T Consensus       180 ~l~igl~~Gl~PCpgAl~VLL~a~~lg-----~~~~Gi~~vlafslGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~  254 (279)
T PRK10019        180 ILLFGLTGGLIPCPAAITVLLICIQLK-----ALTLGATLVLSFSIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRA  254 (279)
T ss_pred             hhHHHHHhccCCCHHHHHHHHHHHHhc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            356677778889987777666665442     23356788999999999999999998754332 21   1122   345


Q ss_pred             HHHHHHHHHHHHHHHH
Q 020530          197 PLAASGLAIVMGLNLL  212 (325)
Q Consensus       197 ~ii~GvllIl~GL~lL  212 (325)
                      +++.+++.+++|+.+.
T Consensus       255 p~~s~~l~i~~G~~~~  270 (279)
T PRK10019        255 PYFSSLLIGLVGVYMG  270 (279)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6999999999999775

>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC

Probab=93.11  E-value=3.5  Score=37.83  Aligned_cols=81  Identities=17%  Similarity=0.270  Sum_probs=54.8

Q ss_pred             HHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHH
Q 020530          127 AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV  206 (325)
Q Consensus       127 aGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~ii~GvllIl  206 (325)
                      ..+...++|  +..+|++++...+. +.++|++..++...+.....+.|...|-..-   +.++--.+.+++..|+++.+
T Consensus         9 ~~lf~iinP--~g~ip~f~~lt~~~-~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL---~~fgIsl~af~IaGGiiL~~   82 (203)
T PF01914_consen    9 ITLFAIINP--IGNIPIFLSLTKGM-SPKERRRIARRASIIAFIILLIFAFFGQLIL---NFFGISLPAFRIAGGIILFL   82 (203)
T ss_pred             HHHHHHHhH--HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHH
Confidence            345555555  46789888887654 3456667777887777777777766664321   22332335689999999999


Q ss_pred             HHHHHHH
Q 020530          207 MGLNLLE  213 (325)
Q Consensus       207 ~GL~lLg  213 (325)
                      +|+.++.
T Consensus        83 ia~~ml~   89 (203)
T PF01914_consen   83 IALEMLF   89 (203)
T ss_pred             HHHHHhC
Confidence            9999984

These proteins may be transporters. ; GO: 0016021 integral to membrane

>PRK10995 inner membrane protein; Provisional

Probab=93.06  E-value=4.9  Score=37.24  Aligned_cols=86  Identities=17%  Similarity=0.224  Sum_probs=57.6

Q ss_pred             HHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Q 020530          121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAA  200 (325)
Q Consensus       121 l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~ii~  200 (325)
                      +..-...++....+|  +..+|++++...+. +.++|++..++...+.......+...|-.+-   +.++-..+.+++..
T Consensus         7 ~~~~~~~~lf~iinP--~g~~pif~~lt~~~-~~~~r~~ia~~~~~~a~~ill~f~~~G~~il---~~fgIs~~a~rIaG   80 (221)
T PRK10995          7 AIGLGLVVLLPLANP--LTTVALFLGLSGNM-TPEERNRQALMASVYVFAIMMVAFYAGQLVM---STFGISIPGLRIAG   80 (221)
T ss_pred             HHHHHHHHHHHHhch--hhhHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCHHHHHHHH
Confidence            333445567777766  56889999987654 3345666667777777766666666654321   22333346789999


Q ss_pred             HHHHHHHHHHHH
Q 020530          201 SGLAIVMGLNLL  212 (325)
Q Consensus       201 GvllIl~GL~lL  212 (325)
                      |+++..+|+.++
T Consensus        81 GilL~~igi~ml   92 (221)
T PRK10995         81 GLIVAFIGFRML   92 (221)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999997

>PRK11111 hypothetical protein; Provisional

Probab=92.08  E-value=9.5  Score=35.43  Aligned_cols=82  Identities=15%  Similarity=0.186  Sum_probs=55.3

Q ss_pred             HHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHH
Q 020530          125 FGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLA  204 (325)
Q Consensus       125 FlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~ii~Gvll  204 (325)
                      ....+...++|  ...+|++++...+. +.++|++..++...+.......|...|-..   =+.++--.+.+++..|+++
T Consensus        13 ~~~~Lf~iinP--ig~ipiflslt~~~-s~~~r~~ia~~a~l~a~~ill~f~~~G~~i---L~~fGIsl~afrIaGGiiL   86 (214)
T PRK11111         13 FFIGLFALVNP--VGILPVFISMTSHQ-TAAERNKTNLTANLSVAIILLISLFLGDFI---LNLFGISIDSFRIAGGILV   86 (214)
T ss_pred             HHHHHHHHhCc--chhHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCCHHHHHHHHHHHH
Confidence            34466666666  56889999987654 345566667777777777776666665322   1122222356899999999


Q ss_pred             HHHHHHHH
Q 020530          205 IVMGLNLL  212 (325)
Q Consensus       205 Il~GL~lL  212 (325)
                      ..+|+.|+
T Consensus        87 ~~ial~Ml   94 (214)
T PRK11111         87 VTIAMSMI   94 (214)
T ss_pred             HHHHHHHh
Confidence            99999997

>TIGR00427 membrane protein, MarC family

Probab=90.07  E-value=2.6  Score=38.68  Aligned_cols=81  Identities=15%  Similarity=0.258  Sum_probs=56.5

Q ss_pred             HHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHH
Q 020530          126 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAI  205 (325)
Q Consensus       126 laGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~ii~GvllI  205 (325)
                      ...+...++|  +..+|++++...+. +.++|++...+...+.......|...|-..  + +.++--.+.+++..|+++.
T Consensus        11 ~~~Lf~iinP--ig~ipvfl~lt~~~-~~~~r~~ia~~~~l~a~~ill~f~~~G~~i--L-~~fgIsl~afrIaGGiiL~   84 (201)
T TIGR00427        11 FISLFAIINP--IGNIPIFISLTEYY-TAAERNKIAKKANISSFIILLIFLVFGDTI--L-KLFGISIDAFRIAGGILLF   84 (201)
T ss_pred             HHHHHHHhCc--chHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHhCCCHHHHHHHHHHHHH
Confidence            3455566666  56889999987654 344566677778778777777777776532  1 2333334568999999999


Q ss_pred             HHHHHHH
Q 020530          206 VMGLNLL  212 (325)
Q Consensus       206 l~GL~lL  212 (325)
                      .+|+.++
T Consensus        85 ~ia~~ml   91 (201)
T TIGR00427        85 TIAMDML   91 (201)
T ss_pred             HHHHHHh
Confidence            9999997

MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.

>PF09948 DUF2182: Predicted metal-binding integral membrane protein (DUF2182); InterPro: IPR018688 This family of various hypothetical bacterial membrane proteins having predicted metal-binding properties has no known function

Probab=89.86  E-value=1.9  Score=39.60  Aligned_cols=101  Identities=16%  Similarity=0.118  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHhhhhccccccCCchhhhhc
Q 020530          161 IGDSIAFSLGLATTLALLGVGASFAGKAYGQIG-------TGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAA  233 (325)
Q Consensus       161 l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~-------~~l~ii~GvllIl~GL~lLg~~~l~lp~~~~~l~~~~~~~  233 (325)
                      ......|..|-..+-...|+++..+...++...       +.-+++.+.++++-|+..+..+|-.=.+.-++...-....
T Consensus        36 ~~~~~~f~~GYl~vW~~~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~Ll~AG~yQ~sp~K~~cL~~Cr~p~~f~~~~  115 (191)
T PF09948_consen   36 ARSTALFVAGYLAVWLAFGLVATALQWALHQLALLSPMMASASPWLAGAVLLAAGLYQFSPLKQACLNHCRSPLSFLAFH  115 (191)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHCCCcchHhhcC
Confidence            456789999999999999999887766655321       1235778888888999888655432111111111001112


Q ss_pred             CCCChhhhhHhhHhhhhccCCCChHHHH
Q 020530          234 NFPSSVQAYLAGLTFALAASPCSTPVLA  261 (325)
Q Consensus       234 ~~~~~~gafllGll~GL~~~PC~~PvL~  261 (325)
                      .+.+..+++-+|+-.|+--..|+-+...
T Consensus       116 wr~g~~~alr~Gl~hG~~CvGCCWaLMl  143 (191)
T PF09948_consen  116 WRAGARGALRMGLRHGLYCVGCCWALML  143 (191)
T ss_pred             CCcccchHHHHHHHHccHHHHHHHHHHH
Confidence            3445788999999999988888865443

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=88.38  E-value=0.9  Score=47.91  Aligned_cols=90  Identities=26%  Similarity=0.218  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHhhcC--CCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---hh
Q 020530          119 TSLAVIFGAGLVTSL--SPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ---IG  193 (325)
Q Consensus       119 ~~l~~aFlaGLltsl--sPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~---~~  193 (325)
                      -.+..+|..|.++.+  +||+-|-+...+.|+...+   +--.....-.++.+|+.+=|.++|+.-   ++.+-.   +.
T Consensus       288 G~~~GaF~mG~La~Lv~sPCt~ppLa~aL~Yiaqsg---~~~~g~~~l~al~LGMg~Plllv~~f~---~~~LPk~G~WM  361 (569)
T COG4232         288 GSIVGAFFMGALAGLVVSPCTAPPLAGALLYIAQSG---NALLGGLALYALGLGMGLPLLLIGVFG---NRLLPKPGPWM  361 (569)
T ss_pred             CchHHHHHHHHHHHHhcCcCcchhHHHHHHHHHhcc---hHHHHHHHHHHHHHhcccchhhheecc---cccCCCCCcHH
Confidence            347778888888744  7999999999999987532   122334445667788888888887643   444433   33


Q ss_pred             hhHHHHHHHHHHHHHHHHHHH
Q 020530          194 TGLPLAASGLAIVMGLNLLEI  214 (325)
Q Consensus       194 ~~l~ii~GvllIl~GL~lLg~  214 (325)
                      +.+..+.|.+|....+.++.+
T Consensus       362 ~~vK~~fGFvlLa~aiwLl~~  382 (569)
T COG4232         362 NTVKQAFGFVLLATAIWLLWR  382 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            445677888887777777644

>PRK10739 putative antibiotic transporter; Provisional

Probab=86.66  E-value=2.9  Score=38.35  Aligned_cols=80  Identities=13%  Similarity=0.224  Sum_probs=53.4

Q ss_pred             HHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHH
Q 020530          127 AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV  206 (325)
Q Consensus       127 aGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~~~~~l~ii~GvllIl  206 (325)
                      ..+....+|  +..+|++++...+. +.++|++..++...+.......|...|-..-   +.++--.+.+++..|+++..
T Consensus         9 ~~Lf~iinP--ig~ipiflslt~~~-~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL---~~fGIsl~afrIAGGilL~~   82 (197)
T PRK10739          9 VLLILIMDP--LGNLPIFMSVLKHL-EPKRRRAIMIRELLIALLVMLVFLFAGEKIL---AFLNLRTETVSISGGIILFL   82 (197)
T ss_pred             HHHHHHHhH--hhHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHH
Confidence            345555555  56889999987654 3445666677777777776666666654221   22332335689999999999


Q ss_pred             HHHHHH
Q 020530          207 MGLNLL  212 (325)
Q Consensus       207 ~GL~lL  212 (325)
                      +|+.++
T Consensus        83 ial~ml   88 (197)
T PRK10739         83 IAIKMI   88 (197)
T ss_pred             HHHHHh
Confidence            999997

>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=85.02  E-value=12  Score=36.67  Aligned_cols=88  Identities=24%  Similarity=0.244  Sum_probs=61.0

Q ss_pred             HHHHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------
Q 020530          121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ---------  191 (325)
Q Consensus       121 l~~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~---------  191 (325)
                      .-..+..|+..++-||...+.-+.+++..+.     ....+...+++.+|...+-+.++.++-..-+..-.         
T Consensus       201 ~~~~~~~~l~~GLrPCpgAi~VLlfal~~gl-----~~~Gil~VlamS~GtalTvs~lA~~av~ak~~a~~~~g~~~~~~  275 (303)
T COG2215         201 WKQQWLFGLTGGLRPCPGAIFVLLFALSLGL-----YTLGILSVLAMSIGTALTVSALALLAVTAKNTAVRLSGFRTLAK  275 (303)
T ss_pred             HHHHHHHHHHhcCccCcHHHHHHHHHHHhch-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            3456677777788899999888888876532     22456788999999999977777766544332211         


Q ss_pred             -hhhhHHHHHHHHHHHHHHHHHH
Q 020530          192 -IGTGLPLAASGLAIVMGLNLLE  213 (325)
Q Consensus       192 -~~~~l~ii~GvllIl~GL~lLg  213 (325)
                       +...+.++.|.+++++|+.++.
T Consensus       276 ~~~~~~~l~~gli~l~~g~~~l~  298 (303)
T COG2215         276 RISYIVSLLGGLIGLYFGLHLLL  298 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence             1223566778888889988763

>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family

Probab=84.49  E-value=8.8  Score=37.28  Aligned_cols=163  Identities=18%  Similarity=0.201  Sum_probs=81.5

Q ss_pred             HHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------hhhh
Q 020530          123 VIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ-------IGTG  195 (325)
Q Consensus       123 ~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~lG~~l~~-------~~~~  195 (325)
                      ++|..|+--.+-|=-+..+--..--..     +++++....++.|.+|=.++-.+..++++.....+.+       ++..
T Consensus         3 la~~lGlrHA~DaDHiaAId~~trkl~-----~~~~~~~~~G~~fslGHs~vV~l~~l~ia~~~~~~~~~~~~~~~igg~   77 (280)
T TIGR00802         3 LAYVLGLRHAFDADHIAAIDNTTRKLM-----QQGRRPLGVGFFFSLGHSTVVVLATVLIAVASALLTERLDGLHEIGGL   77 (280)
T ss_pred             HHHHhhhhccCCcchhhhhHHHHHHHh-----hcCCCceeeeeeecCccHHHHHHHHHHHHHHHHHHHhhchhHHhccce
Confidence            466667766666555443332222111     1223445678889999888777776666544333322       2222


Q ss_pred             H-HHHHHHHHHHHHHHHH----HHhhh-hccccc----cC----Cch-----hh-h--hcCCCChhhhhHhhHhhhhccC
Q 020530          196 L-PLAASGLAIVMGLNLL----EIIEL-QLPSFF----DN----FDP-----RA-A--AANFPSSVQAYLAGLTFALAAS  253 (325)
Q Consensus       196 l-~ii~GvllIl~GL~lL----g~~~l-~lp~~~----~~----l~~-----~~-~--~~~~~~~~gafllGll~GL~~~  253 (325)
                      + ..+.+.+++++|+.-+    +.++. +-..+.    +.    +++     |. +  .+...+++.-|.+|++||+.+=
T Consensus        78 iGt~VS~~FL~~ig~~Nl~iL~~~~~~~r~~r~g~~~~~~l~~~l~~rG~~~Rll~~lf~~v~~pw~mypvG~LFGLGFD  157 (280)
T TIGR00802        78 IGTLVSALFLLIIALLNLVILRNLLRLFRKVRRGIYDEADLEALLGNRGLLTRLLGPLFRLVTKSWHMYPVGFLFGLGFD  157 (280)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhccCcHHHHHHHHHHHhcCchHHHHHHHHHHcccc
Confidence            2 3556666776664332    21211 100000    00    000     00 0  0124567889999999999743


Q ss_pred             CCChHHHHHHHHHHhccCChhHH-HHHHHHHHhhHHHH
Q 020530          254 PCSTPVLATLLGYVATSKDPLIG-GTLLLSYTTGYVAP  290 (325)
Q Consensus       254 PC~~PvL~aiL~~Aaasgs~l~G-~llml~FgLG~~lP  290 (325)
                      --+---+.++-+.+++++-+.+. ..+.+.|..||++-
T Consensus       158 TATEIaLL~isa~~a~~g~~~~~il~lP~LFtaGM~L~  195 (280)
T TIGR00802       158 TATEVALLGLSASAAARGLSIAAVLSLPVLFAAGMALF  195 (280)
T ss_pred             hHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhhhHHh
Confidence            32211222222222333444444 56689999999764

This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.

>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type

Probab=82.32  E-value=45  Score=31.41  Aligned_cols=56  Identities=21%  Similarity=0.110  Sum_probs=32.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hH---HHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 020530          155 KSRAQIIGDSIAFSLGLATTLALLGVGASFA-GK---AYGQIGTGLPLAASGLAIVMGLNLLEI  214 (325)
Q Consensus       155 ~sr~~~l~~~l~F~lG~i~ty~lLG~la~~l-G~---~l~~~~~~l~ii~GvllIl~GL~lLg~  214 (325)
                      -+||+.......|.++....    +.+++.. -+   .+.++..++..+.+.+++..|+.....
T Consensus        29 ls~k~~~~i~~~Y~~l~~~l----~~i~~~~~~~~~~~i~~yg~~~h~imal~li~~Gi~ti~~   88 (224)
T PF09930_consen   29 LSRKEIALIALGYGLLFLLL----GYIASPINMEIYEFILRYGMVIHLIMALLLIYAGIYTIKK   88 (224)
T ss_pred             ccHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            35666555555555555443    4444333 11   223344566778888888888887744

>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional

Probab=80.38  E-value=43  Score=30.00  Aligned_cols=81  Identities=22%  Similarity=0.133  Sum_probs=47.2

Q ss_pred             HHHHHHHhhcCCCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHH---HhhhhHHH
Q 020530          123 VIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASF-AGKAYG---QIGTGLPL  198 (325)
Q Consensus       123 ~aFlaGLltslsPCvLpmlPi~la~i~~~~~~~sr~~~l~~~l~F~lG~i~ty~lLG~la~~-lG~~l~---~~~~~l~i  198 (325)
                      ..++..++..++|  .|-.-..+..-.        ++..+.++.+.+|..+.+.+...++.. ++..+.   .....+.+
T Consensus         8 ~~~~~~~~~~~sP--GP~~~~v~~~~~--------~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~   77 (205)
T PRK10520          8 AYLLTSIILSLSP--GSGAINTMSTSI--------SHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKW   77 (205)
T ss_pred             HHHHHHHHHhcCC--chhHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3444556666667  333322332211        123445778888888888777655543 222333   33456778


Q ss_pred             HHHHHHHHHHHHHHH
Q 020530          199 AASGLAIVMGLNLLE  213 (325)
Q Consensus       199 i~GvllIl~GL~lLg  213 (325)
                      +.+..++.+|..++.
T Consensus        78 ~Ga~YL~~lg~~~~~   92 (205)
T PRK10520         78 AGAAYLIWLGIQQWR   92 (205)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            888888889998873

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00