Citrus Sinensis ID: 020532

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
Protein Sequence
MNQLVAMSVMRGLINGRKHSIGYARTVVRCHPNVWDGDDMPLLGLRMMVMMSSYSSSSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHcccccccccHHHHHcccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcccccccHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHcccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccHHHHEEEEHHHHHccccccccHcccccccccccccccccccc
Coil and Loop (DISEMBL)
MNQLVAMSVMRGLINGRKHSIGYARtvvrchpnvwdgddmplLGLRMMVMMssyssssesvpekvkekgengivpssywgisrpkitredgspwpwncfmpwetyRADLsidlkkhhvpttflDKVAYRTVKLLriptdlffqrRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLkdidsgsienvpapaiaidywrlpkdatlkDVITVIRAdeahhrdvnhfasdiqfqgkelrdapaplgyh
Flexible Loop (DISEMBL)
MNQLVAMSVMRGLINGRKHSIGYARtvvrchpnvwdGDDMPLLGLRMMVMMSSYSSSSESVPEKvkekgengivpssywgisrpkitredgspwPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAidywrlpkdATLKDVITVIRADEAHHRDvnhfasdiqfqgkelrdapaplgyh
Low Complexity Region (SEG)
MNQLVAMSVMRGLINGRKHSIGYARTVVRCHPNVWDGDDMPLLGLRMmvmmssyssssesvpekvkekGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH
Disordered region (IsUnstruct)
*****AMSVMRGLINGRKHSIGYARTVVRCHPNVWDGDDMPLLGLRMMVM***********************VPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQ****************
Disordered Region (DISOPRED)
*********************************************************************************************WPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGK************
Disordered Region (DISEMBL)
MNQLVAMSVMRGLINGRKHSIGYARTVVRCHPNVWDGDDMPLLGLRMMVMMS*****************ENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH
Disordered Region (DISPRO)
**QLVAMSVMRGLINGRKHSIGYARTVVRCHPNVWDGDDMPLL*****************************IVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLG**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNQLVAMSVMRGLINGRKHSIGYARTVVRCHPNVWDGDDMPLLGLRMMVMMSSYSSSSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	325	2.2.26 [Sep-21-2011]
Q40294	318	Ubiquinol oxidase, mitoch	N/A	no	0.975	0.996	0.765	1e-146
Q41266	333	Ubiquinol oxidase 2, mito	yes	no	0.778	0.759	0.885	1e-137
O22049	353	Ubiquinol oxidase 2, mito	yes	no	0.846	0.779	0.792	1e-131
Q39219	354	Ubiquinol oxidase 1a, mit	no	no	0.787	0.723	0.794	1e-126
O03376	326	Alternative oxidase 3, mi	no	no	0.990	0.987	0.647	1e-124
Q41224	353	Ubiquinol oxidase 1, mito	N/A	no	0.864	0.796	0.698	1e-122
Q40578	297	Ubiquinol oxidase 2, mito	N/A	no	0.766	0.838	0.791	1e-122
O23913	325	Ubiquinol oxidase 1b, mit	no	no	0.787	0.787	0.759	1e-120
Q07185	321	Ubiquinol oxidase 1, mito	no	no	0.867	0.878	0.695	1e-120
O22048	329	Ubiquinol oxidase 1c, mit	no	no	0.787	0.778	0.751	1e-118

>sp|Q40294|AOX1_MANIN Ubiquinol oxidase, mitochondrial OS=Mangifera indica GN=AOMI 1 PE=1 SV=2

 Score =  518 bits (1335), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 245/320 (76%), Positives = 280/320 (87%), Gaps = 3/320 (0%)

Query: 7   MSVMRGLINGRKHSIGYARTVVRC-HPNVWDGDDMPLLGLRMMVMMSSYSSSSESVPEKV 65
           M+VMRGL+NG ++   Y  T +   HP V +G+ +    ++   M+S+   +   V E+ 
Sbjct: 1   MTVMRGLLNGGRYGNRYIWTAISLRHPEVMEGNGLESAVMQWRRMLSNAGGAEAQVKEQK 60

Query: 66  KEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDK 125
           +EK +  +  S+YWGISRPKITREDGS WPWNCFMPWETYR+DLSIDLKKHHVP TF+DK
Sbjct: 61  EEKKDAMV--SNYWGISRPKITREDGSEWPWNCFMPWETYRSDLSIDLKKHHVPRTFMDK 118

Query: 126 VAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKA 185
            AYRTVK+LR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK + SGGWIKA
Sbjct: 119 FAYRTVKILRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKLEQSGGWIKA 178

Query: 186 LLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEE 245
           LLEEAENERMHLMTMVELV+PKWYER+LVL VQGVFFN+FFVLY+LSPKLAHR+VGYLEE
Sbjct: 179 LLEEAENERMHLMTMVELVQPKWYERLLVLAVQGVFFNSFFVLYVLSPKLAHRIVGYLEE 238

Query: 246 EAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFA 305
           EAIHSYTEYLKDIDSG+I+N+PAPAIAIDYWRLPKDATLKDVITV+RADEAHHRDVNHFA
Sbjct: 239 EAIHSYTEYLKDIDSGAIKNIPAPAIAIDYWRLPKDATLKDVITVVRADEAHHRDVNHFA 298

Query: 306 SDIQFQGKELRDAPAPLGYH 325
           SD+Q QGKELRDAPAP+GYH
Sbjct: 299 SDVQVQGKELRDAPAPVGYH 318

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.
Mangifera indica (taxid: 29780)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q41266|AOX2_SOYBN Ubiquinol oxidase 2, mitochondrial OS=Glycine max GN=AOX2 PE=1 SV=2

 Score =  486 bits (1251), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 224/253 (88%), Positives = 242/253 (95%)

Query: 73  IVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVK 132
           +V SSYWGISRPK+ REDG+ WPWNCFMPWE+YR+++SIDL KHHVP   LDKVAYRTVK
Sbjct: 81  VVESSYWGISRPKVVREDGTEWPWNCFMPWESYRSNVSIDLTKHHVPKNVLDKVAYRTVK 140

Query: 133 LLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAEN 192
           LLRIPTDLFF+RRYGCRAMMLETVAAVPGMVGGMLLHL+SLRKFQ SGGWIKALLEEAEN
Sbjct: 141 LLRIPTDLFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAEN 200

Query: 193 ERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYT 252
           ERMHLMTMVELVKPKWYER+LVL VQGVFFNAFFVLY+LSPK+AHR+VGYLEEEAIHSYT
Sbjct: 201 ERMHLMTMVELVKPKWYERLLVLAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIHSYT 260

Query: 253 EYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQG 312
           EYLKD++SG+IENVPAPAIAIDYWRLPKDA LKDVITVIRADEAHHRDVNHFASDI FQG
Sbjct: 261 EYLKDLESGAIENVPAPAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIHFQG 320

Query: 313 KELRDAPAPLGYH 325
           KELR+APAP+GYH
Sbjct: 321 KELREAPAPIGYH 333

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O22049|AOX2_ARATH Ubiquinol oxidase 2, mitochondrial OS=Arabidopsis thaliana GN=AOX2 PE=1 SV=2

 Score =  469 bits (1206), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 222/280 (79%), Positives = 249/280 (88%), Gaps = 5/280 (1%)

Query: 51  MSSYSSSSESVPEKVKEKGENG---IVPSSYWGI--SRPKITREDGSPWPWNCFMPWETY 105
           MSS S+  +       +KG+NG   +   SYWGI  ++ KITR+DGS WPWNCFMPWETY
Sbjct: 74  MSSASAMEKKDENLTVKKGQNGGGSVAVPSYWGIETAKMKITRKDGSDWPWNCFMPWETY 133

Query: 106 RADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGG 165
           +A+LSIDLKKHHVP    DKVAYR VKLLRIPTD+FFQRRYGCRAMMLETVAAVPGMVGG
Sbjct: 134 QANLSIDLKKHHVPKNIADKVAYRIVKLLRIPTDIFFQRRYGCRAMMLETVAAVPGMVGG 193

Query: 166 MLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAF 225
           MLLHLKS+RKF+HSGGWIKALLEEAENERMHLMTM+ELVKPKWYER+LV+ VQG+FFN+F
Sbjct: 194 MLLHLKSIRKFEHSGGWIKALLEEAENERMHLMTMMELVKPKWYERLLVMLVQGIFFNSF 253

Query: 226 FVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLK 285
           FV Y++SP+LAHRVVGYLEEEAIHSYTE+LKDID+G IENV APAIAIDYWRLPKDATLK
Sbjct: 254 FVCYVISPRLAHRVVGYLEEEAIHSYTEFLKDIDNGKIENVAAPAIAIDYWRLPKDATLK 313

Query: 286 DVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           DV+TVIRADEAHHRDVNHFASDI+ QGKELR+A AP+GYH
Sbjct: 314 DVVTVIRADEAHHRDVNHFASDIRNQGKELREAAAPIGYH 353

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q39219|AOX1A_ARATH Ubiquinol oxidase 1a, mitochondrial OS=Arabidopsis thaliana GN=AOX1A PE=1 SV=2

 Score =  451 bits (1159), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 205/258 (79%), Positives = 235/258 (91%), Gaps = 2/258 (0%)

Query: 68  KGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVA 127
           KG+ GI  +SYWG+   KIT+EDGS W WNCF PWETY+AD++IDLKKHHVPTTFLD++A
Sbjct: 99  KGDKGI--ASYWGVEPNKITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIA 156

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           Y TVK LR PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALL
Sbjct: 157 YWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALL 216

Query: 188 EEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEA 247
           EEAENERMHLMT +E+ KPKWYER LV+TVQGVFFNA+F+ YL+SPK AHR+VGYLEEEA
Sbjct: 217 EEAENERMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEA 276

Query: 248 IHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASD 307
           IHSYTE+LK++D G+IENVPAPAIAIDYWRLP DATL+DV+ V+RADEAHHRDVNHFASD
Sbjct: 277 IHSYTEFLKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASD 336

Query: 308 IQFQGKELRDAPAPLGYH 325
           I +QG+EL++APAP+GYH
Sbjct: 337 IHYQGRELKEAPAPIGYH 354

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O03376|AOX3_SOYBN Alternative oxidase 3, mitochondrial OS=Glycine max GN=AOX3 PE=1 SV=1

 Score =  446 bits (1147), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/329 (64%), Positives = 252/329 (76%), Gaps = 7/329 (2%)

Query: 1   MNQLVAMSVMRGLINGRKHS----IGYARTVVRCHPNVWDGDDMPLLGLRMMVMMSSYSS 56
           M  ++  S  R L+ G   S    +  A  V + H +   G       LR M  +     
Sbjct: 1   MKNVLVRSAARALLGGGGRSYYRQLSTAAIVEQRHQH--GGGAFGSFHLRRMSTLPEVKD 58

Query: 57  SSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKH 116
              S  +K +  G +  V +SYWGI+RPK+ REDG+ WPWNCFMPW++Y +D+SID+ KH
Sbjct: 59  Q-HSEEKKNEVNGTSNAVVTSYWGITRPKVRREDGTEWPWNCFMPWDSYHSDVSIDVTKH 117

Query: 117 HVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKF 176
           H P +  DKVA+R VK LR+ +D++F+ RYGC AMMLET+AAVPGMVGGMLLHLKSLRKF
Sbjct: 118 HTPKSLTDKVAFRAVKFLRVLSDIYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKF 177

Query: 177 QHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLA 236
           QHSGGWIKALLEEAENERMHLMTMVELVKP W+ER+L+ T QGVFFNAFFV YLLSPK A
Sbjct: 178 QHSGGWIKALLEEAENERMHLMTMVELVKPSWHERLLIFTAQGVFFNAFFVFYLLSPKAA 237

Query: 237 HRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEA 296
           HR VGYLEEEA+ SYT++L  I+SG +ENVPAPAIAIDYWRLPKDATLKDV+TVIRADEA
Sbjct: 238 HRFVGYLEEEAVISYTQHLNAIESGKVENVPAPAIAIDYWRLPKDATLKDVVTVIRADEA 297

Query: 297 HHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           HHRDVNHFASDI  QGKEL++APAP+GYH
Sbjct: 298 HHRDVNHFASDIHHQGKELKEAPAPIGYH 326

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q41224|AOX1_TOBAC Ubiquinol oxidase 1, mitochondrial OS=Nicotiana tabacum GN=AOX1 PE=1 SV=1

 Score =  438 bits (1126), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/295 (69%), Positives = 240/295 (81%), Gaps = 14/295 (4%)

Query: 45  LRMMVMMSSYSSSSESVPEKVKEK-GENGIVPS-------------SYWGISRPKITRED 90
           +R   +M S S+ S ++ +K  +K  ENG   +             SYWG+   K+T+ED
Sbjct: 59  VRHFPVMGSRSAMSMALNDKQHDKKAENGSAAATGGGDGGDEKSVVSYWGVQPSKVTKED 118

Query: 91  GSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRA 150
           G+ W WNCF PWETY+ADLSIDL KHH PTTFLDK AY TVK LR PTD+FFQRRYGCRA
Sbjct: 119 GTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWTVKSLRYPTDIFFQRRYGCRA 178

Query: 151 MMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYE 210
           MMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIK LL+EAENERMHLMT +E+ KP WYE
Sbjct: 179 MMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKTLLDEAENERMHLMTFMEVAKPNWYE 238

Query: 211 RMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPA 270
           R LV  VQGVFFNA+FV YLLSPKLAHR+VGYLEEEAIHSYTE+LK++D G+IENVPAPA
Sbjct: 239 RALVFAVQGVFFNAYFVTYLLSPKLAHRIVGYLEEEAIHSYTEFLKELDKGNIENVPAPA 298

Query: 271 IAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           IAIDY RLPKD+TL DV+ V+RADEAHHRDVNHFASDI +QG++L+D+PAP+GYH
Sbjct: 299 IAIDYCRLPKDSTLLDVVLVVRADEAHHRDVNHFASDIHYQGQQLKDSPAPIGYH 353

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q40578|AOX2_TOBAC Ubiquinol oxidase 2, mitochondrial OS=Nicotiana tabacum GN=AOX2 PE=1 SV=2

 Score =  437 bits (1123), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 197/249 (79%), Positives = 223/249 (89%)

Query: 77  SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRI 136
           SYWG+   K+T+EDG+ W WNCF PWETY+ADLSIDL KHH PTTFLDK AY TVK LR 
Sbjct: 49  SYWGVPPSKVTKEDGTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWTVKALRY 108

Query: 137 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMH 196
           PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALLEEAENERMH
Sbjct: 109 PTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMH 168

Query: 197 LMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
           LMT +E+ KP WYER LV  VQGVF NA+FV YLLSPKLAHR+VGYLEEEAIHSYTE+LK
Sbjct: 169 LMTFMEVAKPNWYERALVFAVQGVFINAYFVTYLLSPKLAHRIVGYLEEEAIHSYTEFLK 228

Query: 257 DIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELR 316
           ++D G+IENVPAPAIAIDYWRLPKD+TL+DV+ V+RADEAHHRDVNHFA DI +QG++L+
Sbjct: 229 ELDKGNIENVPAPAIAIDYWRLPKDSTLRDVVLVVRADEAHHRDVNHFAPDIHYQGQQLK 288

Query: 317 DAPAPLGYH 325
           D+PAP+GYH
Sbjct: 289 DSPAPIGYH 297

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O23913|AOX1B_ARATH Ubiquinol oxidase 1b, mitochondrial OS=Arabidopsis thaliana GN=AOX1B PE=1 SV=1

 Score =  430 bits (1105), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 196/258 (75%), Positives = 230/258 (89%), Gaps = 2/258 (0%)

Query: 68  KGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVA 127
           KGE  IV  SYWG+   KIT+EDG+ W W+CF PWETY++DL+IDLKKHHVP+T  DK+A
Sbjct: 70  KGEQLIV--SYWGVKPMKITKEDGTEWKWSCFRPWETYKSDLTIDLKKHHVPSTLPDKLA 127

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           Y TVK LR PTDLFFQRRYGCRAMMLETVAAVPGMVGGML+H KSLR+F+ SGGWIKALL
Sbjct: 128 YWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLVHCKSLRRFEQSGGWIKALL 187

Query: 188 EEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEA 247
           EEAENERMHLMT +E+ KP WYER LV+ VQG+FFNA+F+ YL+SPK AHR+VGYLEEEA
Sbjct: 188 EEAENERMHLMTFMEVAKPNWYERALVIAVQGIFFNAYFLGYLISPKFAHRMVGYLEEEA 247

Query: 248 IHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASD 307
           IHSYTE+LK++D+G+IENVPAPAIAIDYWRL  DATL+DV+ V+RADEAHHRDVNH+ASD
Sbjct: 248 IHSYTEFLKELDNGNIENVPAPAIAIDYWRLEADATLRDVVMVVRADEAHHRDVNHYASD 307

Query: 308 IQFQGKELRDAPAPLGYH 325
           I +QG+EL++APAP+GYH
Sbjct: 308 IHYQGRELKEAPAPIGYH 325

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q07185|AOX1_SOYBN Ubiquinol oxidase 1, mitochondrial OS=Glycine max GN=AOX1 PE=1 SV=1

 Score =  430 bits (1105), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/292 (69%), Positives = 240/292 (82%), Gaps = 10/292 (3%)

Query: 44  GLRMMVMMSSYSSSSESVPEKVKEKGENGI----------VPSSYWGISRPKITREDGSP 93
           GLR +      S S+ ++ EK K + + G+          V  SYWGI   KIT++DG+ 
Sbjct: 30  GLRALYGGGVRSESTLALSEKEKIEKKVGLSSAGGNKEEKVIVSYWGIQPSKITKKDGTE 89

Query: 94  WPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMML 153
           W WNCF PW TY+ADLSIDL+KH  PTTFLDK+A+ TVK+LR PTD+FFQRRYGCRAMML
Sbjct: 90  WKWNCFSPWGTYKADLSIDLEKHMPPTTFLDKMAFWTVKVLRYPTDVFFQRRYGCRAMML 149

Query: 154 ETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERML 213
           ETVAAVPGMV GMLLH KSLR+F+HSGGW KALLEEAENERMHLMT +E+ KPKWYER L
Sbjct: 150 ETVAAVPGMVAGMLLHCKSLRRFEHSGGWFKALLEEAENERMHLMTFMEVAKPKWYERAL 209

Query: 214 VLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAI 273
           V+TVQGVFFNA+F+ YLLSPK AHR+ GYLEEEAIHSYTE+LK++D G+IENVPAPAIAI
Sbjct: 210 VITVQGVFFNAYFLGYLLSPKFAHRMFGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAI 269

Query: 274 DYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           DYW+LP  +TL+DV+ V+RADEAHHRDVNHFASDI +QG+ELR+A AP+GYH
Sbjct: 270 DYWQLPPGSTLRDVVMVVRADEAHHRDVNHFASDIHYQGRELREAAAPIGYH 321

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O22048|AOX1C_ARATH Ubiquinol oxidase 1c, mitochondrial OS=Arabidopsis thaliana GN=AOX1C PE=1 SV=1

 Score =  426 bits (1095), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 194/258 (75%), Positives = 229/258 (88%), Gaps = 2/258 (0%)

Query: 68  KGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVA 127
           KGE  IV  SYWG+   KIT+EDG+ W W+CF PWETY+ADL+IDLKKHHVP+T  DK+A
Sbjct: 74  KGEQLIV--SYWGVKPMKITKEDGTEWKWSCFRPWETYKADLTIDLKKHHVPSTLPDKIA 131

Query: 128 YRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALL 187
           Y  VK LR PTDLFFQRRYGCRA+MLETVAAVPGMVGGML+H KSLR+F+ SGGWIKALL
Sbjct: 132 YWMVKSLRWPTDLFFQRRYGCRAIMLETVAAVPGMVGGMLMHFKSLRRFEQSGGWIKALL 191

Query: 188 EEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEA 247
           EEAENERMHLMT +E+ KPKWYER LV++VQGVFFNA+ + Y++SPK AHR+VGYLEEEA
Sbjct: 192 EEAENERMHLMTFMEVAKPKWYERALVISVQGVFFNAYLIGYIISPKFAHRMVGYLEEEA 251

Query: 248 IHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASD 307
           IHSYTE+LK++D+G+IENVPAPAIA+DYWRL  DATL+DV+ V+RADEAHHRDVNH+ASD
Sbjct: 252 IHSYTEFLKELDNGNIENVPAPAIAVDYWRLEADATLRDVVMVVRADEAHHRDVNHYASD 311

Query: 308 IQFQGKELRDAPAPLGYH 325
           I +QG EL++APAP+GYH
Sbjct: 312 IHYQGHELKEAPAPIGYH 329

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
225448273	320	PREDICTED: alternative oxidase, mitochon	0.984	1.0	0.772	1e-146
171198301	320	mitochondrial alternative oxidase 2 [Vit	0.984	1.0	0.772	1e-145
3915618	318	RecName: Full=Ubiquinol oxidase, mitocho	0.975	0.996	0.765	1e-144
283488059	338	mitochondrial alternative oxidase 2a [Da	1.0	0.961	0.757	1e-140
122058944	329	mitochondrial alternative oxidase 2a [Vi	0.987	0.975	0.756	1e-140
14572654	329	putative alternative oxidase [Vigna ungu	0.987	0.975	0.753	1e-140
344190170	326	mitochondrial alternative oxidase 1A [Co	0.981	0.978	0.740	1e-139
488826	274	alternative oxidase [Mangifera indica]	0.843	1.0	0.836	1e-138
225571961	329	mitochondrial alternative oxidase 2a [Da	0.778	0.768	0.909	1e-138
291245406	349	mitochondrial AOX2 [Citrullus lanatus]	0.975	0.908	0.703	1e-138

>gi|225448273|ref|XP_002274470.1| PREDICTED: alternative oxidase, mitochondrial [Vitis vinifera]

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 251/325 (77%), Positives = 279/325 (85%), Gaps = 5/325 (1%)

Query: 1   MNQLVAMSVMRGLINGRKHSIGYARTVVRCHPNVWDGDDMPLLGLRMMVMMSSYSSSSES 60
           MNQLVA S+MRGLING K +     +V R        D+    G RMM   ++ +  ++ 
Sbjct: 1   MNQLVARSLMRGLINGAKCNRSILCSVTRVELR----DEKAAFG-RMMSTETALAEKNQK 55

Query: 61  VPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPT 120
                + + ++ +V SSYWGI RPKITREDGSPWPWNCFMPWETY AD +IDL KHHVP 
Sbjct: 56  EKSVEEVEKQSKVVFSSYWGIQRPKITREDGSPWPWNCFMPWETYHADTAIDLSKHHVPK 115

Query: 121 TFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSG 180
           TF+DKVAYRTVKLLRIPTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHL+SLRKF+HSG
Sbjct: 116 TFVDKVAYRTVKLLRIPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFEHSG 175

Query: 181 GWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVV 240
           GW+KALLEEAENERMHLMTMVELV+PKWYER+LVLTVQGVFFNAFFVLY+LSPK AHRVV
Sbjct: 176 GWVKALLEEAENERMHLMTMVELVRPKWYERLLVLTVQGVFFNAFFVLYVLSPKAAHRVV 235

Query: 241 GYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRD 300
           GYLEEEAIHSYTE+LKDIDSG+IENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRD
Sbjct: 236 GYLEEEAIHSYTEFLKDIDSGAIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRD 295

Query: 301 VNHFASDIQFQGKELRDAPAPLGYH 325
           VNHFASDI FQGK+L +APAP+GYH
Sbjct: 296 VNHFASDIHFQGKKLNEAPAPIGYH 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171198301|gb|ACB45425.1| mitochondrial alternative oxidase 2 [Vitis vinifera]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 251/325 (77%), Positives = 278/325 (85%), Gaps = 5/325 (1%)

Query: 1   MNQLVAMSVMRGLINGRKHSIGYARTVVRCHPNVWDGDDMPLLGLRMMVMMSSYSSSSES 60
           MNQLVA S+MRGLING K +     +V R        D+    G RMM   ++ +  ++ 
Sbjct: 1   MNQLVARSLMRGLINGAKCNRSILCSVTRVELR----DEKAAFG-RMMSTETALAEKNQK 55

Query: 61  VPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPT 120
                + + ++ +V SSYWGI RPKITREDGSPWPWNCFMPWETY AD +IDL KHHVP 
Sbjct: 56  EKSVEEVEKQSKVVFSSYWGIQRPKITREDGSPWPWNCFMPWETYHADTAIDLSKHHVPK 115

Query: 121 TFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSG 180
           TF DKVAYRTVKLLRIPTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHL+SLRKF+HSG
Sbjct: 116 TFADKVAYRTVKLLRIPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFEHSG 175

Query: 181 GWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVV 240
           GW+KALLEEAENERMHLMTMVELV+PKWYER+LVLTVQGVFFNAFFVLY+LSPK AHRVV
Sbjct: 176 GWVKALLEEAENERMHLMTMVELVRPKWYERLLVLTVQGVFFNAFFVLYVLSPKAAHRVV 235

Query: 241 GYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRD 300
           GYLEEEAIHSYTE+LKDIDSG+IENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRD
Sbjct: 236 GYLEEEAIHSYTEFLKDIDSGAIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRD 295

Query: 301 VNHFASDIQFQGKELRDAPAPLGYH 325
           VNHFASDI FQGK+L +APAP+GYH
Sbjct: 296 VNHFASDIHFQGKKLNEAPAPIGYH 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3915618|sp|Q40294.2|AOX1_MANIN RecName: Full=Ubiquinol oxidase, mitochondrial; AltName: Full=Alternative oxidase; Flags: Precursor

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/320 (76%), Positives = 280/320 (87%), Gaps = 3/320 (0%)

Query: 7   MSVMRGLINGRKHSIGYARTVVRC-HPNVWDGDDMPLLGLRMMVMMSSYSSSSESVPEKV 65
           M+VMRGL+NG ++   Y  T +   HP V +G+ +    ++   M+S+   +   V E+ 
Sbjct: 1   MTVMRGLLNGGRYGNRYIWTAISLRHPEVMEGNGLESAVMQWRRMLSNAGGAEAQVKEQK 60

Query: 66  KEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDK 125
           +EK +  +  S+YWGISRPKITREDGS WPWNCFMPWETYR+DLSIDLKKHHVP TF+DK
Sbjct: 61  EEKKDAMV--SNYWGISRPKITREDGSEWPWNCFMPWETYRSDLSIDLKKHHVPRTFMDK 118

Query: 126 VAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKA 185
            AYRTVK+LR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK + SGGWIKA
Sbjct: 119 FAYRTVKILRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKLEQSGGWIKA 178

Query: 186 LLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEE 245
           LLEEAENERMHLMTMVELV+PKWYER+LVL VQGVFFN+FFVLY+LSPKLAHR+VGYLEE
Sbjct: 179 LLEEAENERMHLMTMVELVQPKWYERLLVLAVQGVFFNSFFVLYVLSPKLAHRIVGYLEE 238

Query: 246 EAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFA 305
           EAIHSYTEYLKDIDSG+I+N+PAPAIAIDYWRLPKDATLKDVITV+RADEAHHRDVNHFA
Sbjct: 239 EAIHSYTEYLKDIDSGAIKNIPAPAIAIDYWRLPKDATLKDVITVVRADEAHHRDVNHFA 298

Query: 306 SDIQFQGKELRDAPAPLGYH 325
           SD+Q QGKELRDAPAP+GYH
Sbjct: 299 SDVQVQGKELRDAPAPVGYH 318

Source: Mangifera indica

Species: Mangifera indica

Genus: Mangifera

Family: Anacardiaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|283488059|gb|ADB24723.1| mitochondrial alternative oxidase 2a [Daucus carota] gi|283488061|gb|ADB24724.1| mitochondrial alternative oxidase 2a [Daucus carota]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 256/338 (75%), Positives = 281/338 (83%), Gaps = 13/338 (3%)

Query: 1   MNQLVAMSVMRGLING----RKHSIGYARTVVRCHPNVWDGDDMPLLGLR------MMVM 50
           MN L+A SVMR LI+G    R  S   A T+ R            L+ +R      M  M
Sbjct: 1   MNHLLAKSVMRRLISGGGSIRSASPAPALTIFRAVTESATARRESLVYVRGGGVELMKRM 60

Query: 51  MSSYSSSSESVPEKVKEKGEN---GIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRA 107
           MSS +       ++VKE+ +     +V SSYWG++RP+IT+EDG+ WPWNCFMPWETY+A
Sbjct: 61  MSSEAVKVTEEKKEVKEEKKKSESNVVVSSYWGVARPRITKEDGTEWPWNCFMPWETYQA 120

Query: 108 DLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGML 167
           DLSIDL KHHVP TFLDKVAY+TVKLLRIPTD+FFQRRYGCRAMMLETVAAVPGMVGGML
Sbjct: 121 DLSIDLGKHHVPKTFLDKVAYKTVKLLRIPTDVFFQRRYGCRAMMLETVAAVPGMVGGML 180

Query: 168 LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFV 227
           LHL+SLRKFQ SGGWIKALLEEAENERMHLMTMVELVKPKWYER LVLTVQGVFFNAFFV
Sbjct: 181 LHLRSLRKFQQSGGWIKALLEEAENERMHLMTMVELVKPKWYERFLVLTVQGVFFNAFFV 240

Query: 228 LYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDV 287
           LY++SPK+AHRVVGYLEEEAIHSYTEYLKDI+SG+IENVPAPAIAIDYWRLPKDA LKDV
Sbjct: 241 LYMMSPKVAHRVVGYLEEEAIHSYTEYLKDIESGAIENVPAPAIAIDYWRLPKDAKLKDV 300

Query: 288 ITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           ITVIRADEAHHRDVNHFASDI FQGKELRDAPAPLGYH
Sbjct: 301 ITVIRADEAHHRDVNHFASDIHFQGKELRDAPAPLGYH 338

Source: Daucus carota

Species: Daucus carota

Genus: Daucus

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|122058944|gb|ABM66368.1| mitochondrial alternative oxidase 2a [Vigna unguiculata]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/324 (75%), Positives = 269/324 (83%), Gaps = 3/324 (0%)

Query: 5   VAMSVMRGLINGRK-HSIGYARTVVRCHPNVWDGDDMPLLGLRMMVMMSSYSSSSESVPE 63
           ++ +V R L+NGR  + +G    +    P           G       S  S +   +PE
Sbjct: 6   LSCTVRRALLNGRNCNGLGSTAVMAYAAPETRFLCAGAANGGLFYWRRSMASQAEAKLPE 65

Query: 64  KVKEKGE--NGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTT 121
           K KEK E    +V SSYWGISRPKI REDG+ WPWNCFMPWETY ++LSIDL KHHVP  
Sbjct: 66  KDKEKAEAEKSVVESSYWGISRPKIMREDGTEWPWNCFMPWETYHSNLSIDLTKHHVPKN 125

Query: 122 FLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGG 181
           FLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHL+SLRKFQ SGG
Sbjct: 126 FLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGG 185

Query: 182 WIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVG 241
           WIKAL+EEAENERMHLMTMVELVKPKWYER+LV+ VQGVFFNAFFVLY+LSPK+AHR+VG
Sbjct: 186 WIKALMEEAENERMHLMTMVELVKPKWYERLLVIAVQGVFFNAFFVLYILSPKVAHRIVG 245

Query: 242 YLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDV 301
           YLEEEAIHSYTEYLKDI+SG+IENVPAPAIAIDYWRLPKDA LKDVITVIRADEAHHRDV
Sbjct: 246 YLEEEAIHSYTEYLKDIESGAIENVPAPAIAIDYWRLPKDAKLKDVITVIRADEAHHRDV 305

Query: 302 NHFASDIQFQGKELRDAPAPLGYH 325
           NHFASDI FQGKELR+APAP+GYH
Sbjct: 306 NHFASDIHFQGKELREAPAPIGYH 329

Source: Vigna unguiculata

Species: Vigna unguiculata

Genus: Vigna

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14572654|emb|CAC42836.1| putative alternative oxidase [Vigna unguiculata]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 244/324 (75%), Positives = 269/324 (83%), Gaps = 3/324 (0%)

Query: 5   VAMSVMRGLINGRK-HSIGYARTVVRCHPNVWDGDDMPLLGLRMMVMMSSYSSSSESVPE 63
           ++ +V R L+NGR  + +G    +    P           G       S  S +   +PE
Sbjct: 6   LSCTVRRALLNGRNCNGLGSTAVMAYAAPETRFLCAGAANGGLFYWRRSMASQAEAKLPE 65

Query: 64  KVKEKGE--NGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTT 121
           K KEK E    +V SSYWGISRP+I REDG+ WPWNCFMPWETY ++LSIDL KHHVP  
Sbjct: 66  KDKEKAEAEKSVVESSYWGISRPRIMREDGTEWPWNCFMPWETYHSNLSIDLTKHHVPKN 125

Query: 122 FLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGG 181
           FLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHL+SLRKFQ SGG
Sbjct: 126 FLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGG 185

Query: 182 WIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVG 241
           WIKAL+EEAENERMHLMTMVELVKPKWYER+LV+ VQGVFFNAFFVLY+LSPK+AHR+VG
Sbjct: 186 WIKALMEEAENERMHLMTMVELVKPKWYERLLVIAVQGVFFNAFFVLYILSPKVAHRIVG 245

Query: 242 YLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDV 301
           YLEEEAIHSYTEYLKDI+SG+IENVPAPAIAIDYWRLPKDA LKDVITVIRADEAHHRDV
Sbjct: 246 YLEEEAIHSYTEYLKDIESGAIENVPAPAIAIDYWRLPKDAKLKDVITVIRADEAHHRDV 305

Query: 302 NHFASDIQFQGKELRDAPAPLGYH 325
           NHFASDI FQGKELR+APAP+GYH
Sbjct: 306 NHFASDIHFQGKELREAPAPIGYH 329

Source: Vigna unguiculata

Species: Vigna unguiculata

Genus: Vigna

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|344190170|gb|AEM97867.1| mitochondrial alternative oxidase 1A [Corylus heterophylla]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 246/332 (74%), Positives = 277/332 (83%), Gaps = 13/332 (3%)

Query: 1   MNQLVAMSVMRGLINGRKHSIGYARTVVRCHPNVWDGDDMPLLGLRMMVMMSSYSS---- 56
           MN+ VA S+MRGLI+G +HS     + VR H +V       L G      MSS +     
Sbjct: 1   MNRFVARSLMRGLIDGSEHS-RRGISTVREHQSV-----GALGGFYWTRAMSSVAPGPTT 54

Query: 57  ---SSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDL 113
              S +       +K +   V SSYWG+SRP+I REDG+ WPWNCFMPWE+Y+ADLSIDL
Sbjct: 55  TTVSEKKEKGAEAKKSDETAVVSSYWGVSRPRIKREDGTEWPWNCFMPWESYKADLSIDL 114

Query: 114 KKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSL 173
           +KHHVP  FLDKVAYRTVKLLRIPTD+FF+RRYGCRAMMLETVAAVPGMVGGMLLHL+SL
Sbjct: 115 QKHHVPKVFLDKVAYRTVKLLRIPTDIFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSL 174

Query: 174 RKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSP 233
           RKF+HSGGWIKALLEEAENERMHLMTMVELVKPKWYER+LVLTVQGVFFNA+F+ YLLSP
Sbjct: 175 RKFEHSGGWIKALLEEAENERMHLMTMVELVKPKWYERLLVLTVQGVFFNAYFIAYLLSP 234

Query: 234 KLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRA 293
           KLAHR+VGYLEEEAIHSYTEYLKDI SG+IENV APAIAIDYW+LPKDATL+DV+TVIRA
Sbjct: 235 KLAHRIVGYLEEEAIHSYTEYLKDITSGAIENVQAPAIAIDYWKLPKDATLEDVVTVIRA 294

Query: 294 DEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           DEAHHRDVNHFA+DI FQGKELRD+PAP+GYH
Sbjct: 295 DEAHHRDVNHFAADIHFQGKELRDSPAPVGYH 326

Source: Corylus heterophylla

Species: Corylus heterophylla

Genus: Corylus

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|488826|emb|CAA55892.1| alternative oxidase [Mangifera indica]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 231/276 (83%), Positives = 256/276 (92%), Gaps = 2/276 (0%)

Query: 50  MMSSYSSSSESVPEKVKEKGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADL 109
           M+S+   +   V E+ +EK +  +  S+YWGISRPKITREDGS WPWNCFMPWETYR+DL
Sbjct: 1   MLSNAGGAEAQVKEQKEEKKDAMV--SNYWGISRPKITREDGSEWPWNCFMPWETYRSDL 58

Query: 110 SIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH 169
           SIDLKKHHVP TF+DK AYRTVK+LR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH
Sbjct: 59  SIDLKKHHVPRTFMDKFAYRTVKILRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLH 118

Query: 170 LKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLY 229
           LKSLRK + SGGWIKALLEEAENERMHLMTMVELV+PKWYER+LVL VQGVFFN+FFVLY
Sbjct: 119 LKSLRKLEQSGGWIKALLEEAENERMHLMTMVELVQPKWYERLLVLAVQGVFFNSFFVLY 178

Query: 230 LLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVIT 289
           +LSPKLAHR+VGYLEEEAIHSYTEYLKDIDSG+I+N+PAPAIAIDYWRLPKDATLKDVIT
Sbjct: 179 VLSPKLAHRIVGYLEEEAIHSYTEYLKDIDSGAIKNIPAPAIAIDYWRLPKDATLKDVIT 238

Query: 290 VIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           V+RADEAHHRDVNHFASD+Q QGKELRDAPAP+GYH
Sbjct: 239 VVRADEAHHRDVNHFASDVQVQGKELRDAPAPVGYH 274

Source: Mangifera indica

Species: Mangifera indica

Genus: Mangifera

Family: Anacardiaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225571961|gb|ABZ81229.2| mitochondrial alternative oxidase 2a [Daucus carota]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 230/253 (90%), Positives = 245/253 (96%)

Query: 73  IVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVK 132
           +V SSYWG++RP+IT+EDG+ WPWNCFMPWETY+ADLSIDL KHHVP TFLDKVAY+TVK
Sbjct: 77  VVVSSYWGVARPRITKEDGTEWPWNCFMPWETYQADLSIDLGKHHVPKTFLDKVAYKTVK 136

Query: 133 LLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAEN 192
           LLRIPTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHL+SLRKFQ SGGWIKALLEEAEN
Sbjct: 137 LLRIPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAEN 196

Query: 193 ERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYT 252
           ERMHLMTMVELVKPKWYER LVLTVQGVFFNAFFVLY++SPK+AHRVVGYLEEEAIHSYT
Sbjct: 197 ERMHLMTMVELVKPKWYERFLVLTVQGVFFNAFFVLYMMSPKVAHRVVGYLEEEAIHSYT 256

Query: 253 EYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQG 312
           EYLKDI+SG+IENVPAPAIAIDYWRLPKDA LKDVITVIRADEAHHRDVNHFASDI FQG
Sbjct: 257 EYLKDIESGAIENVPAPAIAIDYWRLPKDAKLKDVITVIRADEAHHRDVNHFASDIHFQG 316

Query: 313 KELRDAPAPLGYH 325
           KELRDAPAPLGYH
Sbjct: 317 KELRDAPAPLGYH 329

Source: Daucus carota

Species: Daucus carota

Genus: Daucus

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|291245406|gb|ADD84880.1| mitochondrial AOX2 [Citrullus lanatus]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 251/357 (70%), Positives = 277/357 (77%), Gaps = 40/357 (11%)

Query: 1   MNQLVAMSVMRGLINGRKH---------------SIGYARTV---VRCHPNVWDGDDMPL 42
           MN++   S +RGL+N R                  + +A       R  P V DG     
Sbjct: 1   MNRIAIRSFVRGLVNSRSFGSVAGVAGGGSGGGMKVTFAAVASPGTRYQPMV-DG----- 54

Query: 43  LGLRMMVMMSSYSSSSESV--------------PEKVKEKGENGIVPSSYWGISRPKITR 88
            G +   ++SS ++ +E                 EK +++ EN +V SSYWGI RPKITR
Sbjct: 55  -GFQWRRLLSSSTAVTEEQGKVKLEQGIKDIENQEKKEKETENALV-SSYWGIYRPKITR 112

Query: 89  EDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGC 148
           EDGS WPWNCFMPWETYRADLSIDL KHH P TFLDKVAYR VKLLRIPTD+FFQRRYGC
Sbjct: 113 EDGSEWPWNCFMPWETYRADLSIDLGKHHEPKTFLDKVAYRVVKLLRIPTDIFFQRRYGC 172

Query: 149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
           RA+MLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTM+ELV+PKW
Sbjct: 173 RAVMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMIELVQPKW 232

Query: 209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPA 268
           YER+LV+TVQGVFFNAFFVLYL+SPKLAHR+VGYLEEEAIHSYTEYLKDID G IENVPA
Sbjct: 233 YERLLVITVQGVFFNAFFVLYLMSPKLAHRIVGYLEEEAIHSYTEYLKDIDEGKIENVPA 292

Query: 269 PAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           PAIAIDYWRLPKDA LKDVITVIRADEAHHRDVNHFASDI FQGKELR++  PLGYH
Sbjct: 293 PAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIHFQGKELRESAVPLGYH 349

Source: Citrullus lanatus

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	325
TAIR|locus:2173353	353	AOX2 "alternative oxidase 2" [	0.790	0.728	0.828	6.7e-120
TAIR|locus:2087807	354	AOX1A "alternative oxidase 1A"	0.784	0.720	0.793	5.6e-116
UNIPROTKB|Q8W855	345	AOX1c "Alternative oxidase" [O	0.775	0.730	0.781	1.1e-110
TAIR|locus:2087882	325	AOX1B "alternative oxidase 1B"	0.784	0.784	0.758	2.3e-110
TAIR|locus:2089124	329	AOX1C "alternative oxidase 1C"	0.784	0.775	0.750	1e-109
UNIPROTKB|Q07185	321	AOX1 "Ubiquinol oxidase 1, mit	0.766	0.775	0.775	1.3e-109
TAIR|locus:2028311	318	AOX1D "alternative oxidase 1D"	0.784	0.801	0.733	1.7e-107
DICTYBASE|DDB_G0280819	337	aoxA [Dictyostelium discoideum	0.563	0.543	0.548	8.5e-49
ASPGD|ASPL0000047182	354	AN2099 [Emericella nidulans (t	0.495	0.454	0.533	1.4e-46
UNIPROTKB|O93788	377	AOX1 "Alternative oxidase, mit	0.476	0.411	0.503	2.3e-44

TAIR|locus:2173353 AOX2 "alternative oxidase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1180 (420.4 bits), Expect = 6.7e-120, P = 6.7e-120
 Identities = 217/262 (82%), Positives = 241/262 (91%)

Query:    69 GENG---IVPSSYWGI--SRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFL 123
             G+NG   +   SYWGI  ++ KITR+DGS WPWNCFMPWETY+A+LSIDLKKHHVP    
Sbjct:    92 GQNGGGSVAVPSYWGIETAKMKITRKDGSDWPWNCFMPWETYQANLSIDLKKHHVPKNIA 151

Query:   124 DKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWI 183
             DKVAYR VKLLRIPTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKS+RKF+HSGGWI
Sbjct:   152 DKVAYRIVKLLRIPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSIRKFEHSGGWI 211

Query:   184 KALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYL 243
             KALLEEAENERMHLMTM+ELVKPKWYER+LV+ VQG+FFN+FFV Y++SP+LAHRVVGYL
Sbjct:   212 KALLEEAENERMHLMTMMELVKPKWYERLLVMLVQGIFFNSFFVCYVISPRLAHRVVGYL 271

Query:   244 EEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNH 303
             EEEAIHSYTE+LKDID+G IENV APAIAIDYWRLPKDATLKDV+TVIRADEAHHRDVNH
Sbjct:   272 EEEAIHSYTEFLKDIDNGKIENVAAPAIAIDYWRLPKDATLKDVVTVIRADEAHHRDVNH 331

Query:   304 FASDIQFQGKELRDAPAPLGYH 325
             FASDI+ QGKELR+A AP+GYH
Sbjct:   332 FASDIRNQGKELREAAAPIGYH 353

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA;IDA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

GO:0010230 "alternative respiration" evidence=ISS

TAIR|locus:2087807 AOX1A "alternative oxidase 1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 1143 (407.4 bits), Expect = 5.6e-116, P = 5.6e-116
 Identities = 204/257 (79%), Positives = 234/257 (91%)

Query:    69 GENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAY 128
             G+ GI  +SYWG+   KIT+EDGS W WNCF PWETY+AD++IDLKKHHVPTTFLD++AY
Sbjct:   100 GDKGI--ASYWGVEPNKITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIAY 157

Query:   129 RTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLE 188
              TVK LR PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALLE
Sbjct:   158 WTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLE 217

Query:   189 EAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAI 248
             EAENERMHLMT +E+ KPKWYER LV+TVQGVFFNA+F+ YL+SPK AHR+VGYLEEEAI
Sbjct:   218 EAENERMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAI 277

Query:   249 HSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
             HSYTE+LK++D G+IENVPAPAIAIDYWRLP DATL+DV+ V+RADEAHHRDVNHFASDI
Sbjct:   278 HSYTEFLKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDI 337

Query:   309 QFQGKELRDAPAPLGYH 325
              +QG+EL++APAP+GYH
Sbjct:   338 HYQGRELKEAPAPIGYH 354

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=IGI;ISS;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

GO:0045333 "cellular respiration" evidence=IDA

GO:0009409 "response to cold" evidence=IMP

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=IEP

UNIPROTKB|Q8W855 AOX1c "Alternative oxidase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
 Identities = 197/252 (78%), Positives = 219/252 (86%)

Query:    74 VPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKL 133
             V SSYWGI   K+  +DG  W W+CF PWETY  D +IDLKKHH P   LDKVAY TVK 
Sbjct:    94 VASSYWGIEASKLASKDGVEWKWSCFRPWETYSPDTTIDLKKHHEPKVLLDKVAYWTVKA 153

Query:   134 LRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENE 193
             LR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHL+SLR+F+HSGGWI+ALLEEAENE
Sbjct:   154 LRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENE 213

Query:   194 RMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTE 253
             RMHLMT +E+ KP+WYER LVL VQGVFFNA+F+ YLLSPKLAHRVVGYLEEEAIHSYTE
Sbjct:   214 RMHLMTFMEVAKPRWYERALVLAVQGVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTE 273

Query:   254 YLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGK 313
             YLKDI++G IENVPAP IAIDYWRLP  ATLKDV+ V+RADEAHHRDVNHFASD+ FQG 
Sbjct:   274 YLKDIEAGKIENVPAPPIAIDYWRLPAGATLKDVVVVVRADEAHHRDVNHFASDVHFQGM 333

Query:   314 ELRDAPAPLGYH 325
             +L+D PAPL YH
Sbjct:   334 DLKDIPAPLDYH 345

GO:0005739 "mitochondrion" evidence=IC

TAIR|locus:2087882 AOX1B "alternative oxidase 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 1090 (388.8 bits), Expect = 2.3e-110, P = 2.3e-110
 Identities = 195/257 (75%), Positives = 229/257 (89%)

Query:    69 GENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAY 128
             GE  IV  SYWG+   KIT+EDG+ W W+CF PWETY++DL+IDLKKHHVP+T  DK+AY
Sbjct:    71 GEQLIV--SYWGVKPMKITKEDGTEWKWSCFRPWETYKSDLTIDLKKHHVPSTLPDKLAY 128

Query:   129 RTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLE 188
              TVK LR PTDLFFQRRYGCRAMMLETVAAVPGMVGGML+H KSLR+F+ SGGWIKALLE
Sbjct:   129 WTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLVHCKSLRRFEQSGGWIKALLE 188

Query:   189 EAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAI 248
             EAENERMHLMT +E+ KP WYER LV+ VQG+FFNA+F+ YL+SPK AHR+VGYLEEEAI
Sbjct:   189 EAENERMHLMTFMEVAKPNWYERALVIAVQGIFFNAYFLGYLISPKFAHRMVGYLEEEAI 248

Query:   249 HSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
             HSYTE+LK++D+G+IENVPAPAIAIDYWRL  DATL+DV+ V+RADEAHHRDVNH+ASDI
Sbjct:   249 HSYTEFLKELDNGNIENVPAPAIAIDYWRLEADATLRDVVMVVRADEAHHRDVNHYASDI 308

Query:   309 QFQGKELRDAPAPLGYH 325
              +QG+EL++APAP+GYH
Sbjct:   309 HYQGRELKEAPAPIGYH 325

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

TAIR|locus:2089124 AOX1C "alternative oxidase 1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 193/257 (75%), Positives = 228/257 (88%)

Query:    69 GENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAY 128
             GE  IV  SYWG+   KIT+EDG+ W W+CF PWETY+ADL+IDLKKHHVP+T  DK+AY
Sbjct:    75 GEQLIV--SYWGVKPMKITKEDGTEWKWSCFRPWETYKADLTIDLKKHHVPSTLPDKIAY 132

Query:   129 RTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLE 188
               VK LR PTDLFFQRRYGCRA+MLETVAAVPGMVGGML+H KSLR+F+ SGGWIKALLE
Sbjct:   133 WMVKSLRWPTDLFFQRRYGCRAIMLETVAAVPGMVGGMLMHFKSLRRFEQSGGWIKALLE 192

Query:   189 EAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAI 248
             EAENERMHLMT +E+ KPKWYER LV++VQGVFFNA+ + Y++SPK AHR+VGYLEEEAI
Sbjct:   193 EAENERMHLMTFMEVAKPKWYERALVISVQGVFFNAYLIGYIISPKFAHRMVGYLEEEAI 252

Query:   249 HSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
             HSYTE+LK++D+G+IENVPAPAIA+DYWRL  DATL+DV+ V+RADEAHHRDVNH+ASDI
Sbjct:   253 HSYTEFLKELDNGNIENVPAPAIAVDYWRLEADATLRDVVMVVRADEAHHRDVNHYASDI 312

Query:   309 QFQGKELRDAPAPLGYH 325
              +QG EL++APAP+GYH
Sbjct:   313 HYQGHELKEAPAPIGYH 329

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

UNIPROTKB|Q07185 AOX1 "Ubiquinol oxidase 1, mitochondrial" [Glycine max (taxid:3847)]

 Score = 1083 (386.3 bits), Expect = 1.3e-109, P = 1.3e-109
 Identities = 193/249 (77%), Positives = 223/249 (89%)

Query:    77 SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRI 136
             SYWGI   KIT++DG+ W WNCF PW TY+ADLSIDL+KH  PTTFLDK+A+ TVK+LR 
Sbjct:    73 SYWGIQPSKITKKDGTEWKWNCFSPWGTYKADLSIDLEKHMPPTTFLDKMAFWTVKVLRY 132

Query:   137 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMH 196
             PTD+FFQRRYGCRAMMLETVAAVPGMV GMLLH KSLR+F+HSGGW KALLEEAENERMH
Sbjct:   133 PTDVFFQRRYGCRAMMLETVAAVPGMVAGMLLHCKSLRRFEHSGGWFKALLEEAENERMH 192

Query:   197 LMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK 256
             LMT +E+ KPKWYER LV+TVQGVFFNA+F+ YLLSPK AHR+ GYLEEEAIHSYTE+LK
Sbjct:   193 LMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLLSPKFAHRMFGYLEEEAIHSYTEFLK 252

Query:   257 DIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELR 316
             ++D G+IENVPAPAIAIDYW+LP  +TL+DV+ V+RADEAHHRDVNHFASDI +QG+ELR
Sbjct:   253 ELDKGNIENVPAPAIAIDYWQLPPGSTLRDVVMVVRADEAHHRDVNHFASDIHYQGRELR 312

Query:   317 DAPAPLGYH 325
             +A AP+GYH
Sbjct:   313 EAAAPIGYH 321

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2028311 AOX1D "alternative oxidase 1D" [Arabidopsis thaliana (taxid:3702)]

 Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
 Identities = 187/255 (73%), Positives = 223/255 (87%)

Query:    71 NGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRT 130
             +G V S+YWGI   KIT+ DGS W WNCF PW++Y+ D+SID+ KHH P+ F DK AY T
Sbjct:    64 DGKVISTYWGIPPTKITKPDGSAWKWNCFQPWDSYKPDVSIDVTKHHKPSNFTDKFAYWT 123

Query:   131 VKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEA 190
             V+ L+IP  LFFQR++ C AM+LETVAAVPGMVGGMLLHLKSLR+F+HSGGWIKALLEEA
Sbjct:   124 VQTLKIPVQLFFQRKHMCHAMLLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEA 183

Query:   191 ENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHS 250
             ENERMHLMT +EL +PKWYER +V TVQGVFFNA+F+ Y++SPKLAHR+ GYLEEEA++S
Sbjct:   184 ENERMHLMTFIELSQPKWYERAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEEEAVNS 243

Query:   251 YTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQF 310
             YTE+LKDID+G  EN PAPAIAIDYWRLPKDATL+DV+ VIRADEAHHRD+NH+ASDIQF
Sbjct:   244 YTEFLKDIDAGKFENSPAPAIAIDYWRLPKDATLRDVVYVIRADEAHHRDINHYASDIQF 303

Query:   311 QGKELRDAPAPLGYH 325
             +G EL++APAP+GYH
Sbjct:   304 KGHELKEAPAPIGYH 318

GO:0005739 "mitochondrion" evidence=ISM

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

DICTYBASE|DDB_G0280819 aoxA [Dictyostelium discoideum (taxid:44689)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 101/184 (54%), Positives = 132/184 (71%)

Query:   124 DKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWI 183
             D  A  +V  LR  ++LFF+ ++   A++LETVAAVPG+V GM LHLK+LR  Q S  WI
Sbjct:   105 DNFAKFSVLFLRKFSNLFFKEKFLHYAIVLETVAAVPGLVAGMFLHLKTLRNMQ-SNNWI 163

Query:   184 KALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYL 243
             K L++E ENERMHL++ +EL KP   ER +V   Q +++N F V Y+LSPK AHR  GYL
Sbjct:   164 KILMDEMENERMHLLSFMELTKPTLLERGMVAVTQAIYWNLFLVFYVLSPKTAHRFTGYL 223

Query:   244 EEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNH 303
             EE+A+ +YT  L+DIDSG + N  AP IAI+YW LP+DATL+D+I VIR DE+ HR VNH
Sbjct:   224 EEQAVVTYTHMLEDIDSGKVPNYKAPQIAIEYWGLPEDATLRDLILVIRQDESDHRLVNH 283

Query:   304 FASD 307
               S+
Sbjct:   284 EISN 287

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000047182 AN2099 [Emericella nidulans (taxid:162425)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 88/165 (53%), Positives = 125/165 (75%)

Query:   149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
             R + LE+VA VPGMVGGML HL+SLR+ +   GWI+ LLEEA NERMHL+T +++ +P W
Sbjct:   152 RFVFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKMAEPGW 211

Query:   209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---EN 265
             + R++VL  QGVFFN FF+ YL+SP+  HR VGYLEEEA+ +YT  +KD++SG +   E 
Sbjct:   212 FMRLMVLGAQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTRAIKDLESGRLPHWEK 271

Query:   266 VPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNHFASDIQ 309
             + AP IA+ YW++P+ + T+KD++  +RADEA HR+VNH   +++
Sbjct:   272 LEAPEIAVKYWKMPEGNRTMKDLLLYVRADEAKHREVNHTLGNLK 316

GO:0005739 "mitochondrion" evidence=IDA

GO:0009916 "alternative oxidase activity" evidence=IEA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0010230 "alternative respiration" evidence=IEA

GO:0034599 "cellular response to oxidative stress" evidence=IEA

UNIPROTKB|O93788 AOX1 "Alternative oxidase, mitochondrial" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 446 (162.1 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
 Identities = 81/161 (50%), Positives = 116/161 (72%)

Query:   149 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW 208
             R + LE++AAVPGMV GML HL SLR+ +   GWI+ LLEEA NERMHL+T +++ +P W
Sbjct:   151 RFIFLESIAAVPGMVAGMLRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFLKMCEPGW 210

Query:   209 YERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIEN--- 265
               ++L++  QGV+FNA FV YL+SPK+ HR VGYLEEEA+H+YT  +++++ G +     
Sbjct:   211 LMKILIIGAQGVYFNAMFVAYLISPKICHRFVGYLEEEAVHTYTRSIEELERGDLPKWSD 270

Query:   266 --VPAPAIAIDYWRLPKD-ATLKDVITVIRADEAHHRDVNH 303
                  P IA+ YW +P+   T++D++  IRADEA+HR V+H
Sbjct:   271 PKFQVPEIAVSYWGMPEGHRTMRDLLLYIRADEANHRGVHH 311

GO:0043581 "mycelium development" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P22185	AOX1_TYPVN	1, ., -, ., -, ., -	0.7226	0.8061	0.7507	N/A	no
Q40578	AOX2_TOBAC	1, ., -, ., -, ., -	0.7911	0.7661	0.8383	N/A	no
Q41266	AOX2_SOYBN	1, ., -, ., -, ., -	0.8853	0.7784	0.7597	yes	no
O22049	AOX2_ARATH	1, ., -, ., -, ., -	0.7928	0.8461	0.7790	yes	no
Q40294	AOX1_MANIN	1, ., -, ., -, ., -	0.7656	0.9753	0.9968	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Aox2 RecName- Full=Alternative oxidase; EC=1.-.-.-; (320 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	325
PLN02478	328	PLN02478, PLN02478, alternative oxidase	0.0
pfam01786	214	pfam01786, AOX, Alternative oxidase	1e-121
cd01053	168	cd01053, AOX, Alternative oxidase, ferritin-like d	1e-100
cd00657	130	cd00657, Ferritin_like, Ferritin-like superfamily	4e-04

>gnl|CDD|215265 PLN02478, PLN02478, alternative oxidase

 Score =  552 bits (1425), Expect = 0.0
 Identities = 218/331 (65%), Positives = 251/331 (75%), Gaps = 11/331 (3%)

Query: 1   MNQLVAMSVMRGLINGRKHSIGYARTVVRCHPNVWDGDDMPLLGLRMMVMMSSYSSSSES 60
            N+LV+ +     +          R   R       G     +G +        +   ES
Sbjct: 3   CNRLVSSASSASHMKSPLFPAAPMRIGDRA---PRFGGFR--IGSKHAQEEKKLAEEEES 57

Query: 61  VPEKVKEKGENGIVP------SSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLK 114
             +  + K E   V        SYWGI   KIT+EDG+ W WNCF PWETY+ADLSIDLK
Sbjct: 58  SGKATENKDEGSTVKGGQKAIVSYWGIEPAKITKEDGTEWKWNCFRPWETYKADLSIDLK 117

Query: 115 KHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLR 174
           KHHVP T LDK+AY TVK LR+PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLR
Sbjct: 118 KHHVPKTLLDKIAYWTVKSLRVPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLR 177

Query: 175 KFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPK 234
           +F+HSGGWIKALLEEAENERMHLMT +E+ KPKWYER LV+ VQGVFFNA+F+ YL+SPK
Sbjct: 178 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVIAVQGVFFNAYFLGYLISPK 237

Query: 235 LAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRAD 294
            AHR+VGYLEEEAIHSYTE+LKD+D+G IENVPAPAIAIDYWRLP DATL+DV+TV+RAD
Sbjct: 238 FAHRIVGYLEEEAIHSYTEFLKDLDAGKIENVPAPAIAIDYWRLPADATLRDVVTVVRAD 297

Query: 295 EAHHRDVNHFASDIQFQGKELRDAPAPLGYH 325
           EAHHRDVNHFASDI +QGKEL++APAP+GYH
Sbjct: 298 EAHHRDVNHFASDIHYQGKELKEAPAPIGYH 328

Length = 328

>gnl|CDD|216699 pfam01786, AOX, Alternative oxidase

 Score =  346 bits (890), Expect = e-121
 Identities = 133/214 (62%), Positives = 159/214 (74%), Gaps = 9/214 (4%)

Query: 103 ETYRADLSIDLK-KHHVPTTFLDKVAYRTVKLLRIPTDL-------FFQRRYGCRAMMLE 154
             Y  D   ++K  H  P T  DKVA+  VK LR   DL         + R+  RA+ LE
Sbjct: 1   PIYTEDELENVKVTHREPKTLGDKVAFFLVKFLRWCFDLVTGYRYEMTEERWLHRAIFLE 60

Query: 155 TVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLV 214
           TVA VPGMVGGML HL+SLR+ +  GGWI+ LLEEAENERMHL+T +EL KP W+ER LV
Sbjct: 61  TVAGVPGMVGGMLRHLRSLRRLKRDGGWIETLLEEAENERMHLLTFLELGKPGWFERFLV 120

Query: 215 LTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAID 274
           L  QGVFFNAFF+LYLLSP++AHR VGYLEEEA+ +YT +LKDI++G + NVPAP IAID
Sbjct: 121 LLAQGVFFNAFFLLYLLSPRMAHRFVGYLEEEAVVTYTHFLKDIEAGKLPNVPAPEIAID 180

Query: 275 YWRLPK-DATLKDVITVIRADEAHHRDVNHFASD 307
           YWRLP+ DATL+DVI VIRADEAHHRDVNH  ++
Sbjct: 181 YWRLPELDATLRDVILVIRADEAHHRDVNHTLAN 214

The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transfered directly from reduced ubiquinol to oxygen forming water. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process. In rice the transcript levels of the alternative oxidase are increased by low temperature. Length = 214

>gnl|CDD|153112 cd01053, AOX, Alternative oxidase, ferritin-like diiron-binding domain

 Score =  290 bits (745), Expect = e-100
 Identities = 102/167 (61%), Positives = 124/167 (74%)

Query: 142 FQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMV 201
           ++ R+  R + LETVA VPGMV GMLLHL SLR     GGWIK LLEEAENERMHL+   
Sbjct: 1   YEDRWLARFIFLETVARVPGMVAGMLLHLYSLRGMWRDGGWIKTLLEEAENERMHLLIFE 60

Query: 202 ELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG 261
           EL  P W+ R  V   Q VF+NA+F+LYL+SP+LAHR VGYLEEEA+ +YTE+LKDI+ G
Sbjct: 61  ELGGPGWWFRRFVAQHQAVFYNAYFLLYLISPRLAHRFVGYLEEEAVDTYTEFLKDIEEG 120

Query: 262 SIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDI 308
              ++PAP IAI+Y+RL +DATL DV   IRADEA HR VNH  +D+
Sbjct: 121 LKPDLPAPEIAIEYYRLGEDATLYDVFVAIRADEAEHRKVNHACADL 167

Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular disulfide bridge between monomeric subunits. The enzyme is non-proton-motive and does not contribute to the conservation of energy. The heat that dissipates from AOX activity is used in thermogenic plants to volatilize primary amines to attract pollinating insects. Other functions have been proposed: i) that the alternative oxidase allows Krebs-cycle turnover when the energy charge of the cell is high, and ii) that the enzyme protects against oxidative stress. The expression of AOX is induced when plants are exposed to a variety of stresses including chilling, pathogen attack, senescence and fruit ripening. Length = 168

>gnl|CDD|153097 cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 26/125 (20%), Positives = 39/125 (31%), Gaps = 27/125 (21%)

Query: 178 HSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAH 237
                   LLE A+ ER H   + E ++           +      A + L   S   A 
Sbjct: 25  PDPDLKDELLEIADEERRHADALAERLRELGGTP----PLPPAHLLAAYALPKTSDDPAE 80

Query: 238 RVVGYL--EEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 295
            +   L  E  AI +Y E ++  D                     D  L+ ++  I ADE
Sbjct: 81  ALRAALEVEARAIAAYRELIEQAD---------------------DPELRRLLERILADE 119

Query: 296 AHHRD 300
             H  
Sbjct: 120 QRHAA 124

Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF). Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	325
PLN02478	328	alternative oxidase	100.0
PF01786	207	AOX: Alternative oxidase; InterPro: IPR002680 The	100.0
cd01053	168	AOX Alternative oxidase, ferritin-like diiron-bind	100.0
PF03232	172	COQ7: Ubiquinone biosynthesis protein COQ7; InterP	97.64
cd01042	165	DMQH Demethoxyubiquinone hydroxylase, ferritin-lik	97.6
COG2941	204	CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzym	96.59
cd07908	154	Mn_catalase_like Manganese catalase-like protein,	95.96
cd01045	139	Ferritin_like_AB Uncharacterized family of ferriti	95.21
cd01051	156	Mn_catalase Manganese catalase, ferritin-like diir	94.66
cd00657	130	Ferritin_like Ferritin-like superfamily of diiron-	92.97
cd01044	125	Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin	92.9
PRK13456	186	DNA protection protein DPS; Provisional	87.71

>PLN02478 alternative oxidase

Probab=100.00  E-value=7.7e-116  Score=829.54  Aligned_cols=255  Identities=81%  Similarity=1.379  Sum_probs=253.1

Q ss_pred             CCccccccccCCCCCCcccCCCCCCCCCCCCCCccccccccccccCCCCCccchHHHHHHHHHhhcccccccccccccee
Q 020532           71 NGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRA  150 (325)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~p~~~y~~~~~~~~~~H~~P~~~~D~~A~~~Vk~LR~~~D~~f~~r~~~R~  150 (325)
                      .+++++||||+.|.|++|+||++|+|+||+||++|+++..+++.+|++|++|+||+|+++||+|||++|+||++||++||
T Consensus        74 ~~~~~~~ywg~~~~~~~~~dg~~~~w~~~~p~~~y~~~~~~~~~~H~~P~~~~Dk~A~~~Vk~lR~~~D~~f~~R~~~R~  153 (328)
T PLN02478         74 GQKAIVSYWGIEPAKITKEDGTEWKWNCFRPWETYKADLSIDLKKHHVPKTLLDKIAYWTVKSLRVPTDLFFQRRYGCRA  153 (328)
T ss_pred             CCeeeeeecccCCcccccCCCCCCCccCcCCCccccHhhhchhhcCCCCCchHHHHHHHHHHHHHHHHHHHhhcchhhHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeecccCChhHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHH
Q 020532          151 MMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYL  230 (325)
Q Consensus       151 i~LETVA~VPGmv~gml~HLrSLR~mkrd~gwI~tlLeEAeNERmHLltf~el~kP~~~~R~lv~~aQgvf~n~~f~~Yl  230 (325)
                      +||||||+||||||||++||+|||+|++|+|||++|||||||||||||||+++++|+|++|++++++|++|||+||++||
T Consensus       154 ifLETVA~VPGmV~gmlrHL~SLRr~krd~gWIrtLLeEAeNERMHLLtf~~l~~p~w~eR~lv~~aQgvf~~~ff~~YL  233 (328)
T PLN02478        154 MMLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVIAVQGVFFNAYFLGYL  233 (328)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchhhHhhhhhchhhhHHHHHHHHHHhhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhhhhcccccc
Q 020532          231 LSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQF  310 (325)
Q Consensus       231 iSPr~aHRfvGyLEEEAV~TYT~~L~did~G~l~n~pAP~iAi~YW~LP~~atLrDvi~~IRaDEa~HrdvNH~~ad~~~  310 (325)
                      +|||+|||||||||||||+|||+||+|||+|+|+|+|||+||++||+||+++||||||++||+||++||||||++||++.
T Consensus       234 iSPr~aHRfvGYLEEEAV~TYT~~L~eid~G~l~n~pAP~IAi~YW~LP~~atLrDVi~~IRaDEa~HRdVNH~~sd~~~  313 (328)
T PLN02478        234 ISPKFAHRIVGYLEEEAIHSYTEFLKDLDAGKIENVPAPAIAIDYWRLPADATLRDVVTVVRADEAHHRDVNHFASDIHY  313 (328)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCCCCChHHHHHhCCCCCCcHHHHHHHHHhhhhhhhccCcchhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccccCCCCCCCCC
Q 020532          311 QGKELRDAPAPLGYH  325 (325)
Q Consensus       311 ~~~~l~~~~~~~~y~  325 (325)
                      ||++++++|+|+|||
T Consensus       314 ~~~~~~~~~~~~~~~  328 (328)
T PLN02478        314 QGKELKEAPAPIGYH  328 (328)
T ss_pred             cccccCCCCCCCCCC
Confidence            999999999999999

>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water []

Probab=100.00  E-value=4.9e-88  Score=613.24  Aligned_cols=204  Identities=62%  Similarity=1.048  Sum_probs=199.0

Q ss_pred             cccccccccc-ccCCCCCccchHHHHHHHHHhhccccccccccccceeeeeeecccCChhHHHHHHHHHhhhccccCcch
Q 020532          104 TYRADLSIDL-KKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGW  182 (325)
Q Consensus       104 ~y~~~~~~~~-~~H~~P~~~~D~~A~~~Vk~LR~~~D~~f~~r~~~R~i~LETVA~VPGmv~gml~HLrSLR~mkrd~gw  182 (325)
                      +|+.++..++ .+|++|++++|++|+++||+|||++|++|++||++|++|||||||||||||||++||+|||+|++|+||
T Consensus         2 ~~~~~~~~~v~~~h~~p~~~~d~~A~~~v~~lr~~~D~~~~~r~~~R~~~LEtVA~VPg~v~~~~~Hl~slr~~~rd~g~   81 (207)
T PF01786_consen    2 IYTEEELESVQVTHREPKTFSDRVAYGIVKFLRWFFDLLFEKRWLHRFIFLETVAGVPGMVGGMVRHLRSLRRMKRDGGW   81 (207)
T ss_pred             CCCHHHHhhcccccCCCCcHHHHHHHHHHHHHHHHHHHhccccchhheeeeeecccCChHHHHHHHHHHHHhCCCCCCcH
Confidence            4667666655 489999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHHhchhhHhhhhhchhhhHHHHHHHHHHhhcCCC
Q 020532          183 IKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS  262 (325)
Q Consensus       183 I~tlLeEAeNERmHLltf~el~kP~~~~R~lv~~aQgvf~n~~f~~YliSPr~aHRfvGyLEEEAV~TYT~~L~did~G~  262 (325)
                      |++|||||||||||||||+++++|+|++|++++++|++|||+|+++|++|||+|||||||||||||+|||+||+|||+|+
T Consensus        82 I~~lleEaeNErmHLli~~~l~~p~~~~R~lv~~~q~vf~~~~~~~Yl~sPr~ahrfvgylEeeAv~tYt~~l~di~~g~  161 (207)
T PF01786_consen   82 IKTLLEEAENERMHLLIFEELGKPSWFDRFLVLHAQGVFYNIFFLLYLVSPRTAHRFVGYLEEEAVHTYTEFLEDIDEGK  161 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHhhCCCC-CCCHHHHHHHHHhhhhHhHhhhhhccc
Q 020532          263 IENVPAPAIAIDYWRLPK-DATLKDVITVIRADEAHHRDVNHFASD  307 (325)
Q Consensus       263 l~n~pAP~iAi~YW~LP~-~atLrDvi~~IRaDEa~HrdvNH~~ad  307 (325)
                      |+|+|||+||++||+||+ ++||||||++||+||++||+|||++||
T Consensus       162 l~~~paP~iAi~Yw~l~~~~atlrDvi~~IRaDEa~Hr~vNH~~a~  207 (207)
T PF01786_consen  162 LPNMPAPEIAIDYWGLPELDATLRDVILAIRADEAEHRDVNHTLAD  207 (207)
T ss_pred             CCCCCCCHHHHHHhCCCccCchHHHHHHHHHhhHHHHHHhhhhhcC
Confidence            999999999999999999 999999999999999999999999997

This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process []. In Oryza sativa (Rice) the transcript levels of the alternative oxidase are increased by low temperature []. It has been predicted to contain a coupled diiron centre on the basis of a conserved sequence motif consisting of the proposed iron ligands, four Glu and two His residues []. The EPR study of Arabidopsis thaliana (Mouse-ear cress) alternative oxidase AOX1a shows that the enzyme contains a hydroxo-bridged mixed-valent Fe(II)/Fe(III) binuclear iron centre []. A catalytic cycle has been proposed that involves diiron centre and at least one transient protein-derived radical, most probably an invariant Tyr residue [].; GO: 0007585 respiratory gaseous exchange, 0055114 oxidation-reduction process, 0005740 mitochondrial envelope

>cd01053 AOX Alternative oxidase, ferritin-like diiron-binding domain

Probab=100.00  E-value=3.2e-81  Score=553.56  Aligned_cols=168  Identities=61%  Similarity=1.000  Sum_probs=165.7

Q ss_pred             ccccccceeeeeeecccCChhHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHH
Q 020532          142 FQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVF  221 (325)
Q Consensus       142 f~~r~~~R~i~LETVA~VPGmv~gml~HLrSLR~mkrd~gwI~tlLeEAeNERmHLltf~el~kP~~~~R~lv~~aQgvf  221 (325)
                      |++||++||+||||||||||||++|++||+|||+|+||+|||++|||||||||||||||+++++|+|++|.++..+|++|
T Consensus         1 ~~~r~~~R~~~LEtVA~vPgmv~~~~~HL~slr~~~rd~~wi~~lleEaeNErmHLltf~~l~~p~~~~r~~v~~~q~vf   80 (168)
T cd01053           1 YEDRWLARFIFLETVARVPGMVAGMLLHLYSLRGMWRDGGWIKTLLEEAENERMHLLIFEELGGPGWWFRRFVAQHQAVF   80 (168)
T ss_pred             CCCcceehhhhhhHhccCcHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhchhhHhhhhhchhhhHHHHHHHHHHhhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhh
Q 020532          222 FNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDV  301 (325)
Q Consensus       222 ~n~~f~~YliSPr~aHRfvGyLEEEAV~TYT~~L~did~G~l~n~pAP~iAi~YW~LP~~atLrDvi~~IRaDEa~Hrdv  301 (325)
                      ||+|+++|++|||+|||||||||||||+|||+||+|||+|+++|+|||+||++||+||+++||||||++||+||++||+|
T Consensus        81 y~~~~~~YlisPr~ahrfvgylEEeAV~TYt~~L~~id~g~~~~~paP~iAi~Yw~l~~~atl~Dvi~~IR~DEa~Hr~v  160 (168)
T cd01053          81 YNAYFLLYLISPRLAHRFVGYLEEEAVDTYTEFLKDIEEGLKPDLPAPEIAIEYYRLGEDATLYDVFVAIRADEAEHRKV  160 (168)
T ss_pred             HHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhccccCCCCCCHHHHHHhCCCCCCcHHHHHHHHHhhHHhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccc
Q 020532          302 NHFASDIQ  309 (325)
Q Consensus       302 NH~~ad~~  309 (325)
                      ||+++|+.
T Consensus       161 nh~~~~~~  168 (168)
T cd01053         161 NHACADLG  168 (168)
T ss_pred             HHHhhcCC
Confidence            99999863

Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular

>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]

Probab=97.64  E-value=0.0006  Score=61.44  Aligned_cols=101  Identities=25%  Similarity=0.344  Sum_probs=77.2

Q ss_pred             HHHHHH-HHHHHHHHHHHHHHhh-----CcchHHHHHHHHHHHHHHHHHHHHHHhchhhHhhhhhchhhhHHHHHHHHHH
Q 020532          183 IKALLE-EAENERMHLMTMVELV-----KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK  256 (325)
Q Consensus       183 I~tlLe-EAeNERmHLltf~el~-----kP~~~~R~lv~~aQgvf~n~~f~~YliSPr~aHRfvGyLEEEAV~TYT~~L~  256 (325)
                      ++..+. =++.|.-||..|.++-     .|+++.-+.-    +.-|.+-++.=++.++.++-++.-+|+....-|.+-|+
T Consensus        34 ~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw~----~~g~~LG~~tal~G~~~~~a~t~avE~~V~~Hy~~Ql~  109 (172)
T PF03232_consen   34 LRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLWY----VAGFALGALTALLGDKAAMACTAAVETVVEEHYNDQLR  109 (172)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHHH----HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444 4558999999999965     4777655442    22344445677999999999999999999999999999


Q ss_pred             hhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhh
Q 020532          257 DIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVN  302 (325)
Q Consensus       257 did~G~l~n~pAP~iAi~YW~LP~~atLrDvi~~IRaDEa~HrdvN  302 (325)
                      ++.+..               .++|..++++|..+|+||.+|+|.-
T Consensus       110 ~L~~~~---------------~~~d~~l~~~i~~~r~DE~~H~d~A  140 (172)
T PF03232_consen  110 ELPAMG---------------EEEDPELRAIIEQFRDDELEHRDTA  140 (172)
T ss_pred             HHHhcc---------------ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            995211               1345669999999999999999864

It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process

>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain

Probab=97.60  E-value=0.00083  Score=60.28  Aligned_cols=100  Identities=24%  Similarity=0.329  Sum_probs=76.5

Q ss_pred             HHHHH-HHHHHHHHHHHHHHHhh-----CcchHHHHHHHHHHHHHHHHHHHHHHhchhhHhhhhhchhhhHHHHHHHHHH
Q 020532          183 IKALL-EEAENERMHLMTMVELV-----KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLK  256 (325)
Q Consensus       183 I~tlL-eEAeNERmHLltf~el~-----kP~~~~R~lv~~aQgvf~n~~f~~YliSPr~aHRfvGyLEEEAV~TYT~~L~  256 (325)
                      ++..+ +=++.|.-||-.|.++-     .|+++.-+.-    +.=|..-++.=++.++.++-|+.-+|+....-|.+-|+
T Consensus        31 ~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW~----~~gf~lG~~tal~G~~~a~~~~~avE~~V~~Hy~~ql~  106 (165)
T cd01042          31 VRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLWY----VAGFALGALTALLGKKAAMACTAAVETVVEEHYNDQLR  106 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHH----HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444 45678999999998855     5776654431    11234445666779999999999999999999999999


Q ss_pred             hhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhhhh
Q 020532          257 DIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHF  304 (325)
Q Consensus       257 did~G~l~n~pAP~iAi~YW~LP~~atLrDvi~~IRaDEa~HrdvNH~  304 (325)
                      +++.-                  +|..+++.|..+|.||.+|+|.--.
T Consensus       107 ~L~~~------------------~d~~l~~~l~~~r~DE~~H~d~A~~  136 (165)
T cd01042         107 ELPAQ------------------PDKELRAIIEQFRDDELEHADIAEE  136 (165)
T ss_pred             Hhhcc------------------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98411                  2678999999999999999987443

Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.

>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]

Probab=96.59  E-value=0.021  Score=53.10  Aligned_cols=97  Identities=24%  Similarity=0.231  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhh-----CcchHHHHHHHHHHHHHHHHHHHHHHhchhhHhhhhhchhhhHHHHHHHHHHhhc
Q 020532          185 ALLEEAENERMHLMTMVELV-----KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDID  259 (325)
Q Consensus       185 tlLeEAeNERmHLltf~el~-----kP~~~~R~lv~~aQgvf~n~~f~~YliSPr~aHRfvGyLEEEAV~TYT~~L~did  259 (325)
                      .+.|-++.|-.||-+|.+.-     .|+++--+--    +.-|.+-.+.=|++++++.-|++-.|+.-.+-|.+-|+++.
T Consensus        75 ~l~em~d~E~~HL~~f~~~l~e~~vRPsll~P~W~----~~~FalGA~a~Llgdk~am~~teavE~vIe~Hy~~ql~~L~  150 (204)
T COG2941          75 QLKEMADEEIDHLAWFEQRLLELGVRPSLLNPLWY----AAAFALGAGAGLLGDKAAMGFTEAVETVIEKHYDGQLRELP  150 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHH----HHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44455667788998888744     4766543321    11133344678999999999999999999999999999985


Q ss_pred             CCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhhhh
Q 020532          260 SGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHF  304 (325)
Q Consensus       260 ~G~l~n~pAP~iAi~YW~LP~~atLrDvi~~IRaDEa~HrdvNH~  304 (325)
                                         ..|+.++.-|...|.||..|.+.--.
T Consensus       151 -------------------~~d~~lr~~l~qfR~DE~eH~d~Ai~  176 (204)
T COG2941         151 -------------------NLDAELRAILAQFRDDELEHLDNAIA  176 (204)
T ss_pred             -------------------hccHHHHHHHHHHhhHHHHHHHHHHH
Confidence                               24568999999999999999986443

>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain

Probab=95.96  E-value=0.016  Score=49.52  Aligned_cols=126  Identities=19%  Similarity=0.178  Sum_probs=87.8

Q ss_pred             eeeecccCChhHHHHHHHHHhhhccccCc-chHHHHHHHHHHHHHHHHHHHHhh-----CcchHHHHHHHHHHHHHHHHH
Q 020532          152 MLETVAAVPGMVGGMLLHLKSLRKFQHSG-GWIKALLEEAENERMHLMTMVELV-----KPKWYERMLVLTVQGVFFNAF  225 (325)
Q Consensus       152 ~LETVA~VPGmv~gml~HLrSLR~mkrd~-gwI~tlLeEAeNERmHLltf~el~-----kP~~~~R~lv~~aQgvf~n~~  225 (325)
                      ++|-++|.-|=..++...++.....+... .--+.+...|.-|.-|...+.++-     +|.+......   .+.+|..-
T Consensus        18 ~~~~~~g~~~E~~ai~~Y~y~~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~---~~~~~~~~   94 (154)
T cd07908          18 LLDDYAGTNSELTAISQYIYQHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSD---KFTYWTGK   94 (154)
T ss_pred             HHHHhCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccc---cCCcCCcc
Confidence            45667777777788888888866665433 334556679999999999888863     4654332110   11111111


Q ss_pred             HHHHHhchhhHhhhhhchhhhHHHHHHHHHHhhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhh
Q 020532          226 FVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDV  301 (325)
Q Consensus       226 f~~YliSPr~aHRfvGyLEEEAV~TYT~~L~did~G~l~n~pAP~iAi~YW~LP~~atLrDvi~~IRaDEa~Hrdv  301 (325)
                      .+...-++..+.++.--+|+.|+..|.+.++.+                     +|.+.++++..|..||..|.+.
T Consensus        95 ~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~---------------------~d~~~r~ll~~I~~eE~~H~~~  149 (154)
T cd07908          95 YVNYGESIKEMLKLDIASEKAAIAKYKRQAETI---------------------KDPYIRALLNRIILDEKLHIKI  149 (154)
T ss_pred             ccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHc---------------------CCHHHHHHHHHHHHHHHHHHHH
Confidence            122334667799999999999999999999875                     3578999999999999999764

This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio

>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria

Probab=95.21  E-value=0.75  Score=36.60  Aligned_cols=98  Identities=26%  Similarity=0.270  Sum_probs=66.2

Q ss_pred             hHHHH-HHHHHHHHHHHHHHHHhh-C------cchHHHHH-HHHHHHHHHHHHHHHHHhchhhHhhhhhchhhhHHHHHH
Q 020532          182 WIKAL-LEEAENERMHLMTMVELV-K------PKWYERML-VLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYT  252 (325)
Q Consensus       182 wI~tl-LeEAeNERmHLltf~el~-k------P~~~~R~l-v~~aQgvf~n~~f~~YliSPr~aHRfvGyLEEEAV~TYT  252 (325)
                      .++.+ ..-|..|+.|..++.++. +      |..-.... ....+..+.. -......++..+-+..--+|..|+..|.
T Consensus        28 ~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~a~~~E~~~~~~Y~  106 (139)
T cd01045          28 ELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPEFK-KALESLMDPLEALRLAIEIEKDAIEFYE  106 (139)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhhhHH-HHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence            45554 468899999988888764 1      22211111 1111111111 2345666778888899999999999999


Q ss_pred             HHHHhhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhh
Q 020532          253 EYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDV  301 (325)
Q Consensus       253 ~~L~did~G~l~n~pAP~iAi~YW~LP~~atLrDvi~~IRaDEa~Hrdv  301 (325)
                      ++++.++                     |...++++..|..||..|.+.
T Consensus       107 ~~~~~~~---------------------d~~~~~~~~~l~~~E~~H~~~  134 (139)
T cd01045         107 ELAEKAE---------------------DPEVKKLFEELAEEERGHLRL  134 (139)
T ss_pred             HHHHHcC---------------------CHHHHHHHHHHHHHHHHHHHH
Confidence            9998863                     346899999999999999764

Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.

>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain

Probab=94.66  E-value=0.085  Score=46.62  Aligned_cols=121  Identities=21%  Similarity=0.260  Sum_probs=80.3

Q ss_pred             eeeeecccCChhHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHH
Q 020532          151 MMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYL  230 (325)
Q Consensus       151 i~LETVA~VPGmv~gml~HLrSLR~mkrd~gwI~tlLeEAeNERmHLltf~el~kP~~~~R~lv~~aQgvf~n~~f~~Yl  230 (325)
                      +++|-++|.-|=..++++.+..-..++.+...-..|++.|-.|..|+-++-++-.     .+.. -..+..|   ...|+
T Consensus        24 ~l~~~~gG~~gEl~ai~qYl~q~~~~~~~~~~~d~l~~ia~eEm~H~e~la~~I~-----~Lg~-~~~g~pw---~~~yv   94 (156)
T cd01051          24 LLQEQLGGAFGELSAAMQYLFQSFNFREDPKYRDLLLDIGTEELSHLEMVATLIA-----MLLK-DSQGVPW---TAAYI   94 (156)
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHcC-CCCCCcC---CCccc
Confidence            3677788888877788888887777754444455567899999999987777521     0000 0111111   13332


Q ss_pred             hc---hhhHhhhhhchhhhHHHHHHHHHHhhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhh
Q 020532          231 LS---PKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDV  301 (325)
Q Consensus       231 iS---Pr~aHRfvGyLEEEAV~TYT~~L~did~G~l~n~pAP~iAi~YW~LP~~atLrDvi~~IRaDEa~Hrdv  301 (325)
                      -+   +...-+-+=-.|+.|+.+|.+.++.++                     |.+++|++..|+.||..|.+.
T Consensus        95 ~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~---------------------Dp~v~~~l~~I~~rE~~H~~~  147 (156)
T cd01051          95 QSSGNLVADLRSNIAAESRARLTYERLYEMTD---------------------DPGVKDTLSFLLVREIVHQNA  147 (156)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC---------------------CHHHHHHHHHHHHHHHHHHHH
Confidence            22   233333333458999999999999873                     678999999999999999764

Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz

>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins

Probab=92.97  E-value=1.5  Score=32.89  Aligned_cols=96  Identities=27%  Similarity=0.274  Sum_probs=64.2

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhh-----CcchHHHHHHHHHHHHHHHHHHHHHHhchhhHhhhhhchhhhHHHHHHH
Q 020532          179 SGGWIKALLEEAENERMHLMTMVELV-----KPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTE  253 (325)
Q Consensus       179 d~gwI~tlLeEAeNERmHLltf~el~-----kP~~~~R~lv~~aQgvf~n~~f~~YliSPr~aHRfvGyLEEEAV~TYT~  253 (325)
                      +.++.+.+...+..|+.|...+.++-     +|.......       ..+.-......+|..+-...--.|..++..|..
T Consensus        26 ~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~E~~~~~~y~~   98 (130)
T cd00657          26 DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHL-------LAAYALPKTSDDPAEALRAALEVEARAIAAYRE   98 (130)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH-------HHhcccCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            45666667788999999998888764     344322210       011111122345555555666678888888888


Q ss_pred             HHHhhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhh
Q 020532          254 YLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVN  302 (325)
Q Consensus       254 ~L~did~G~l~n~pAP~iAi~YW~LP~~atLrDvi~~IRaDEa~HrdvN  302 (325)
                      +++..+                     |..++|++..|..||..|...-
T Consensus        99 ~~~~~~---------------------d~~~~~~~~~~~~~E~~H~~~~  126 (130)
T cd00657          99 LIEQAD---------------------DPELRRLLERILADEQRHAAWF  126 (130)
T ss_pred             HHHhcC---------------------ChHHHHHHHHHHHHHHHHHHHH
Confidence            887652                     5678999999999999998753

Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub

>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain

Probab=92.90  E-value=1.4  Score=36.59  Aligned_cols=94  Identities=26%  Similarity=0.374  Sum_probs=64.3

Q ss_pred             hhccccCcchHHHHHHHHHHHHHHHHHHHHhhC-----cchHHHHHHHHHHHHHHHHHHHHHHhchhhHhhhhhchhhhH
Q 020532          173 LRKFQHSGGWIKALLEEAENERMHLMTMVELVK-----PKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEA  247 (325)
Q Consensus       173 LR~mkrd~gwI~tlLeEAeNERmHLltf~el~k-----P~~~~R~lv~~aQgvf~n~~f~~YliSPr~aHRfvGyLEEEA  247 (325)
                      |-....|..--+.+.+-|+.|+-|..+|.++.+     |. ...     ....|+  .++.=++.|..+.++..-.|+.|
T Consensus        20 la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~-~~~-----~~~~~~--~~l~~~~g~~~~l~~~~~~E~~a   91 (125)
T cd01044          20 LAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVPPP-RPK-----LKIFFY--KLLARIFGPTFVLKLLERGEERA   91 (125)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-Ccc-----HHHHHH--HHHHHHHhHHHHHHHHHHhHHhh
Confidence            333444444334456789999999999998762     22 111     111111  12334567888999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhh
Q 020532          248 IHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDV  301 (325)
Q Consensus       248 V~TYT~~L~did~G~l~n~pAP~iAi~YW~LP~~atLrDvi~~IRaDEa~Hrdv  301 (325)
                      +..|++..+.                           +..+..|-.||.+|...
T Consensus        92 i~~Y~~~~~~---------------------------~~~~~~Ii~dE~~H~~~  118 (125)
T cd01044          92 IEKYDRLLEE---------------------------RPELKEIIADELEHEEV  118 (125)
T ss_pred             HhhHHhhhhh---------------------------hHHHHHHHHHHHHHHHH
Confidence            9999998776                           35778899999999765

Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.

>PRK13456 DNA protection protein DPS; Provisional

Probab=87.71  E-value=1.3  Score=41.07  Aligned_cols=118  Identities=22%  Similarity=0.205  Sum_probs=71.4

Q ss_pred             hhhccccCcchHHHHHHHHH-HHHHHHHHHHH-hh----Ccch-HHHHHHHHHHHHHHHHHHHHHHhc-hhhHhhhhhch
Q 020532          172 SLRKFQHSGGWIKALLEEAE-NERMHLMTMVE-LV----KPKW-YERMLVLTVQGVFFNAFFVLYLLS-PKLAHRVVGYL  243 (325)
Q Consensus       172 SLR~mkrd~gwI~tlLeEAe-NERmHLltf~e-l~----kP~~-~~R~lv~~aQgvf~n~~f~~YliS-Pr~aHRfvGyL  243 (325)
                      .+.++.++  =|+..|+++- -|+-|-..+.+ |.    .|.. ...+.-+..+.       .+++-. |...-.++.-.
T Consensus        45 ~~~G~~~e--~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls~~~-------~~~~p~d~tdv~~mL~~~  115 (186)
T PRK13456         45 HLIGLEGE--GLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDISACP-------DAYLPENPTDPKEILKVL  115 (186)
T ss_pred             HHhCcCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhhcCc-------cccCCCCcchHHHHHHHH
Confidence            34445543  2656666555 88999665543 33    3432 22222222221       111211 22233333322


Q ss_pred             ---hhhHHHHHHHHHHhhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhhhhcccccccCccccC
Q 020532          244 ---EEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIQFQGKELRD  317 (325)
Q Consensus       244 ---EEEAV~TYT~~L~did~G~l~n~pAP~iAi~YW~LP~~atLrDvi~~IRaDEa~HrdvNH~~ad~~~~~~~l~~  317 (325)
                         |..|+.+|++.++.+.                   ..|-+=+|++..|-+||.+|.+--..+-...+.|+=.+.
T Consensus       116 L~AEr~AI~~Y~eii~~~~-------------------~kDp~T~~l~~~IL~dE~eH~~dl~~lL~~~~~~~~~~~  173 (186)
T PRK13456        116 LEAERCAIRTYTEICDMTA-------------------GKDPRTYDLALAILQEEIEHEAWFSELLGGGPSGHFRRS  173 (186)
T ss_pred             HHHHHHHHHHHHHHHHHHh-------------------cCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceecC
Confidence               7899999999999985                   457788999999999999999988777666666655544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	325
2v8t_A	302	Manganese-containing pseudocatalase; manganese cat	81.78

>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A

Probab=81.78  E-value=0.8  Score=43.69  Aligned_cols=130  Identities=13%  Similarity=0.066  Sum_probs=79.2

Q ss_pred             eeeecccCChhHHHHHHHHHhhhccccCcc--hHHHHHHHH-HHHHHHHHHHHHhh-------CcchHH-----------
Q 020532          152 MLETVAAVPGMVGGMLLHLKSLRKFQHSGG--WIKALLEEA-ENERMHLMTMVELV-------KPKWYE-----------  210 (325)
Q Consensus       152 ~LETVA~VPGmv~gml~HLrSLR~mkrd~g--wI~tlLeEA-eNERmHLltf~el~-------kP~~~~-----------  210 (325)
                      ++|-++|.=|=..++++.|.--..++..+.  -++.||... --|..|+-++-++-       .|...+           
T Consensus        26 L~eq~GG~~GElsAamqYl~Qs~~~~~~~~~~~~~dLL~dIatEEL~HlEmvat~I~~L~~Ga~~~~~~~~~~~~~~p~~  105 (302)
T 2v8t_A           26 VQALLGGRFGEMSTLMNYMYQSFNFRGKKALKPYYDLIANIATEELGHIELVAATINSLLAKNPGKDLEEGVDPASTPLG  105 (302)
T ss_dssp             HTHHHHSTTSHHHHHHHHHHHHHHCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTTCCCCCCCCGGGCTTG
T ss_pred             HHHHhCCCccHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCChhhhhcccccccchHH
Confidence            678888887777777788877667775532  467776554 78888877655432       121111           


Q ss_pred             --------HHHHHHH--------HHHHHHHHHHHHHhchhhHhhhhhchhhhHHHHHHHHHHhhcCCCCCCCCCCHHHHH
Q 020532          211 --------RMLVLTV--------QGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAID  274 (325)
Q Consensus       211 --------R~lv~~a--------Qgvf~n~~f~~YliSPr~aHRfvGyLEEEAV~TYT~~L~did~G~l~n~pAP~iAi~  274 (325)
                              +.++...        +|+.|+.-.+.|-=.+...-+-+=-.|..|+.+|.+.++.++               
T Consensus       106 ~a~~~~~~~~~i~~g~g~~p~ds~G~pWta~Yv~~~Gdl~aDL~~NiaAE~~Ar~~Y~rL~~~td---------------  170 (302)
T 2v8t_A          106 FAKDVRNAAHFIAGGANSLVMGAMGEHWNGEYVFTSGNLILDLLHNFFLEVAARTHKLRVYEMTD---------------  170 (302)
T ss_dssp             GGGGSSCSHHHHTSSSCCCSBCTTSCBCBGGGCCCCSCHHHHHHHHHHHHHHHHHHHHHHHTTCC---------------
T ss_pred             HhhhcCCcHHHhhcCCCCCccCCCCCCCCcchhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC---------------
Confidence                    0111100        111111111111112334444455569999999999999874               


Q ss_pred             hhCCCCCCCHHHHHHHHHhhhhHhHhhh
Q 020532          275 YWRLPKDATLKDVITVIRADEAHHRDVN  302 (325)
Q Consensus       275 YW~LP~~atLrDvi~~IRaDEa~HrdvN  302 (325)
                            |-..+|+|..|+.||..|...=
T Consensus       171 ------Dp~vkd~L~fLi~RE~~H~~~f  192 (302)
T 2v8t_A          171 ------NPVAREMIGYLLVRGGVHAAAY  192 (302)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------ChhHHHHHHHHHHHHHHHHHHH
Confidence                  5689999999999999997653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	325
d1jkva_	266	Manganese catalase (T-catalase) {Lactobacillus pla	88.21
d2cwla1	299	Manganese catalase (T-catalase) {Thermus thermophi	81.11

>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Manganese catalase (T-catalase)
domain: Manganese catalase (T-catalase)
species: Lactobacillus plantarum [TaxId: 1590]

Probab=88.21  E-value=0.084  Score=47.33  Aligned_cols=128  Identities=19%  Similarity=0.186  Sum_probs=83.2

Q ss_pred             eeeeecccCChhHHHHHHHHHhhhccccCcchHHH-HHHHHHHHHHHHHHHHHhh-----Ccch-H-----HHHHHHHHH
Q 020532          151 MMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKA-LLEEAENERMHLMTMVELV-----KPKW-Y-----ERMLVLTVQ  218 (325)
Q Consensus       151 i~LETVA~VPGmv~gml~HLrSLR~mkrd~gwI~t-lLeEAeNERmHLltf~el~-----kP~~-~-----~R~lv~~aQ  218 (325)
                      +++|-++|.=|=-.++++.|.--..++ +.+.++. |++=+--|..||-++-.+-     .... -     +..+....+
T Consensus        24 ~L~e~~GG~~GElsa~~qYl~Q~~~~~-~~~~~~dll~dIatEEl~HlEmvat~I~~Ll~~~~~~~~~~~~~~~~~~~~~  102 (266)
T d1jkva_          24 RLQESLGGQWGETTGMMSYLSQGWAST-GAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMA  102 (266)
T ss_dssp             HHHHHHHSTTSHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHCTTHHHHHH
T ss_pred             HHHHHhCCCchHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhcccchhHHHHhc
Confidence            367888888887778888887765555 4456654 5678888999988665532     1110 0     000111111


Q ss_pred             H---HHHHH--------------HHHHHHhc---hhhHhhhhhchhhhHHHHHHHHHHhhcCCCCCCCCCCHHHHHhhCC
Q 020532          219 G---VFFNA--------------FFVLYLLS---PKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDYWRL  278 (325)
Q Consensus       219 g---vf~n~--------------~f~~YliS---Pr~aHRfvGyLEEEAV~TYT~~L~did~G~l~n~pAP~iAi~YW~L  278 (325)
                      |   -++..              +...|+.+   +...-|.+=..|..|..+|.+.++.+|                   
T Consensus       103 G~~p~~~~~~g~g~~~~ds~G~pWt~~Yv~~~Gnl~~DL~~NiaAE~~Ar~~Y~rl~~~td-------------------  163 (266)
T d1jkva_         103 GMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTE-------------------  163 (266)
T ss_dssp             HSCHHHHHTTSSCCCSBCTTCCBCBGGGCCCCSCHHHHHHHHHHHHHHHHHHHHHHHTTCC-------------------
T ss_pred             CCCcceeeeccCcccccCCCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------------
Confidence            1   01110              11223332   566777777889999999999998875                   


Q ss_pred             CCCCCHHHHHHHHHhhhhHhHh
Q 020532          279 PKDATLKDVITVIRADEAHHRD  300 (325)
Q Consensus       279 P~~atLrDvi~~IRaDEa~Hrd  300 (325)
                        |...+|+|..|++||..|..
T Consensus       164 --Dp~vk~~L~fL~~rE~~H~~  183 (266)
T d1jkva_         164 --DEGVRDMLKFLLARETQHQL  183 (266)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHH
T ss_pred             --ChhHHHHHHHHHHHHHHHHH
Confidence              67899999999999999965

>d2cwla1 a.25.1.3 (A:1-299) Manganese catalase (T-catalase) {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Manganese catalase (T-catalase)
domain: Manganese catalase (T-catalase)
species: Thermus thermophilus [TaxId: 274]

Probab=81.11  E-value=0.48  Score=42.92  Aligned_cols=129  Identities=12%  Similarity=0.064  Sum_probs=86.6

Q ss_pred             eeeecccCChhHHHHHHHHHhhhccccCcc--hHHH-HHHHHHHHHHHHHHHHHhh------Ccc----------h-H--
Q 020532          152 MLETVAAVPGMVGGMLLHLKSLRKFQHSGG--WIKA-LLEEAENERMHLMTMVELV------KPK----------W-Y--  209 (325)
Q Consensus       152 ~LETVA~VPGmv~gml~HLrSLR~mkrd~g--wI~t-lLeEAeNERmHLltf~el~------kP~----------~-~--  209 (325)
                      ++|-++|.=|=-.++.+.|..-..++....  .++. |++=+--|..||-++-.+-      .|.          . -  
T Consensus        26 l~e~~GG~~GEmsa~mqYl~Q~~~~~~~~~~~~~~dll~dIatEEl~HlEmvat~I~~Ll~~~p~~~~~~~~dp~~~~~~  105 (299)
T d2cwla1          26 VQALLGGRFGEMSTLMNYMYQSFNFRGKKALKPYYDLIANIATEELGHIELVAATINSLLAKNPGKDLEEGVDPESAPLG  105 (299)
T ss_dssp             HGGGTTSTTSHHHHHHHHHHHHHHCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTTCSCCCCCCGGGCTTG
T ss_pred             HHHHhCCccHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhccCchhhHHH
Confidence            688889988888888898876555554432  4544 5678888999987664431      111          0 0  


Q ss_pred             -------HHHHHHHHH--------HHHHHHHHHHHHhchhhHhhhhhchhhhHHHHHHHHHHhhcCCCCCCCCCCHHHHH
Q 020532          210 -------ERMLVLTVQ--------GVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAID  274 (325)
Q Consensus       210 -------~R~lv~~aQ--------gvf~n~~f~~YliSPr~aHRfvGyLEEEAV~TYT~~L~did~G~l~n~pAP~iAi~  274 (325)
                             ..-++...|        |+.|+.=.+.|-=.+...-+.+=..|..|..+|++.++.+|               
T Consensus       106 ~~~~~~n~~h~i~~g~g~~~~ds~G~pWt~~Yv~~sGnl~aDL~~Ni~aE~~Ar~~y~rl~~~td---------------  170 (299)
T d2cwla1         106 FAKDVRNAAHFIAGGANSLVMGAMGEHWNGEYVFTSGNLILDLLHNFFLEVAARTHKLRVYEMTD---------------  170 (299)
T ss_dssp             GGGSSSCSHHHHTSSSSCCSBCTTSCBCBGGGCCCCSCHHHHHHHHHHHHHHHHHHHHHHHTTCC---------------
T ss_pred             hhhccCChhhhhccCCCCCccCCCCCcCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC---------------
Confidence                   011122222        22233333333335577778888889999999999888874               


Q ss_pred             hhCCCCCCCHHHHHHHHHhhhhHhHhh
Q 020532          275 YWRLPKDATLKDVITVIRADEAHHRDV  301 (325)
Q Consensus       275 YW~LP~~atLrDvi~~IRaDEa~Hrdv  301 (325)
                            |..++|+|..+++||..|-..
T Consensus       171 ------Dp~vkd~L~fLi~RE~~H~~~  191 (299)
T d2cwla1         171 ------NPVAREMIGYLLVRGGVHAAA  191 (299)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------CccHHHHHHHHHHHHHHHHHH
Confidence                  678999999999999999654