Citrus Sinensis ID: 020562
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 324 | 2.2.26 [Sep-21-2011] | |||||||
| Q54M22 | 441 | 2-oxoisovalerate dehydrog | yes | no | 0.645 | 0.473 | 0.545 | 2e-67 | |
| O45924 | 431 | 2-oxoisovalerate dehydrog | yes | no | 0.700 | 0.526 | 0.504 | 9e-66 | |
| Q8HXY4 | 445 | 2-oxoisovalerate dehydrog | N/A | no | 0.793 | 0.577 | 0.459 | 8e-64 | |
| P12694 | 445 | 2-oxoisovalerate dehydrog | yes | no | 0.777 | 0.566 | 0.465 | 2e-63 | |
| A5A6H9 | 445 | 2-oxoisovalerate dehydrog | yes | no | 0.777 | 0.566 | 0.465 | 2e-63 | |
| P11960 | 441 | 2-oxoisovalerate dehydrog | yes | no | 0.777 | 0.571 | 0.458 | 3e-63 | |
| P50136 | 442 | 2-oxoisovalerate dehydrog | yes | no | 0.734 | 0.538 | 0.473 | 1e-62 | |
| P11178 | 455 | 2-oxoisovalerate dehydrog | yes | no | 0.719 | 0.512 | 0.476 | 3e-62 | |
| Q9I1M2 | 410 | 2-oxoisovalerate dehydrog | yes | no | 0.626 | 0.495 | 0.411 | 2e-36 | |
| Q72GU1 | 367 | 2-oxoisovalerate dehydrog | yes | no | 0.660 | 0.583 | 0.391 | 6e-36 |
| >sp|Q54M22|ODBA_DICDI 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 256 bits (653), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 114/209 (54%), Positives = 147/209 (70%)
Query: 106 VPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTI 165
+PC+ ++D G + K SKE +KMY+ M+TL VMDS+LY+ QRQGR SFY+T+
Sbjct: 64 IPCYTIMDQEGVVSKPDQDPNFSKEEVIKMYTTMLTLNVMDSILYDVQRQGRISFYMTSF 123
Query: 166 GEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHY 225
GEEAI+IGSAAAL D I QYRE GV +WRG+T+ NQ N+ D GKGRQMP+H+
Sbjct: 124 GEEAIHIGSAAALEMSDTIFAQYRETGVFMWRGFTINDIINQCCTNEHDLGKGRQMPMHF 183
Query: 226 GSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAV 285
GS+K+N TISSP+ TQLPQAVG +Y+ K+ + C + Y G+G SEGDFHAA+NFAA
Sbjct: 184 GSRKINLQTISSPLTTQLPQAVGSSYAQKLAGEKNCTIVYFGEGAASEGDFHAAMNFAAA 243
Query: 286 MEAPVVFICRNNGWAISTNISEQFRSTAI 314
+ P +F CRNN WAIST EQ++ I
Sbjct: 244 LSTPTIFFCRNNKWAISTPSKEQYKGDGI 272
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Dictyostelium discoideum (taxid: 44689) EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 4 |
| >sp|O45924|ODBA_CAEEL 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=Y39E4A.3 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q8HXY4|ODBA_MACFA 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|P12694|ODBA_HUMAN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|A5A6H9|ODBA_PANTR 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|P11960|ODBA_RAT 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial (Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|P50136|ODBA_MOUSE 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|P11178|ODBA_BOVIN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos taurus GN=BCKDHA PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q9I1M2|ODBA_PSEAE 2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=bkdA1 PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q72GU1|ODBA_THET2 2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1757 PE=3 SV=1 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 324 | ||||||
| 312281515 | 471 | unnamed protein product [Thellungiella h | 0.956 | 0.658 | 0.662 | 1e-118 | |
| 15218984 | 472 | 2-oxoisovalerate dehydrogenase E1 compon | 0.966 | 0.663 | 0.653 | 1e-118 | |
| 3822223 | 472 | branched-chain alpha keto-acid dehydroge | 0.962 | 0.661 | 0.652 | 1e-117 | |
| 297845120 | 472 | hypothetical protein ARALYDRAFT_313033 [ | 0.962 | 0.661 | 0.664 | 1e-117 | |
| 356509346 | 478 | PREDICTED: 2-oxoisovalerate dehydrogenas | 0.879 | 0.596 | 0.687 | 1e-111 | |
| 356515957 | 487 | PREDICTED: 2-oxoisovalerate dehydrogenas | 0.879 | 0.585 | 0.678 | 1e-110 | |
| 225431715 | 481 | PREDICTED: 2-oxoisovalerate dehydrogenas | 0.959 | 0.646 | 0.618 | 1e-110 | |
| 225457857 | 471 | PREDICTED: 2-oxoisovalerate dehydrogenas | 0.941 | 0.647 | 0.633 | 1e-109 | |
| 297811017 | 472 | hypothetical protein ARALYDRAFT_350155 [ | 0.765 | 0.525 | 0.733 | 1e-107 | |
| 413916414 | 392 | hypothetical protein ZEAMMB73_816012 [Ze | 0.734 | 0.607 | 0.743 | 1e-107 |
| >gi|312281515|dbj|BAJ33623.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/317 (66%), Positives = 244/317 (76%), Gaps = 7/317 (2%)
Query: 1 MAIWLTKSRAMAQCLRQRVGLLRILSGQSCSSPSTIFPLQQYNSPSL--PSKTLFSPGRS 58
MAIW +SR + LRQ +G +IL + S +F Q +S P K+L R
Sbjct: 1 MAIWFARSRNIVSSLRQNLGSSKILFKRDYSH-RPVFKNSQLSSTVFLGPVKSL----RH 55
Query: 59 ESTVAANQLDSLSSSDSDDDHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGEL 118
EST Q D + SD +D LDFPGGKVGYTSEM+FIPESS +R+PC+RVLD++G +
Sbjct: 56 ESTAVEKQPDLVQLSDEEDAQLELDFPGGKVGYTSEMKFIPESSSRRIPCYRVLDEDGRI 115
Query: 119 IKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAAL 178
I SDF VS+++AV+MY M TLQVMD + YEAQRQGR SFYLT++GEEAINI SAAAL
Sbjct: 116 IPDSDFIPVSEKLAVRMYEQMATLQVMDHIFYEAQRQGRISFYLTSVGEEAINIASAAAL 175
Query: 179 SADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSP 238
S+DD +LPQYREPGVLLWRG+TL++FANQ F NKAD GKGRQMPIHYGS + NY T+SSP
Sbjct: 176 SSDDVVLPQYREPGVLLWRGFTLEEFANQCFGNKADYGKGRQMPIHYGSNRHNYFTVSSP 235
Query: 239 IATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298
IATQLPQA GV YSLKMEKK+ACAV + GDGGTSEGDFHA LNFAAVMEAPVVFICRNNG
Sbjct: 236 IATQLPQAAGVGYSLKMEKKNACAVTFIGDGGTSEGDFHAGLNFAAVMEAPVVFICRNNG 295
Query: 299 WAISTNISEQFRSTAIT 315
WAIST+ISEQFRS I
Sbjct: 296 WAISTHISEQFRSDGIV 312
|
Source: Thellungiella halophila Species: Eutrema halophilum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15218984|ref|NP_173562.1| 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [Arabidopsis thaliana] gi|9454571|gb|AAF87894.1|AC015447_4 branched-chain alpha keto-acid dehydrogenase E1 - alpha subunit [Arabidopsis thaliana] gi|20466298|gb|AAM20466.1| branched-chain alpha keto-acid dehydrogenase, putative [Arabidopsis thaliana] gi|23198122|gb|AAN15588.1| branched-chain alpha keto-acid dehydrogenase, putative [Arabidopsis thaliana] gi|332191978|gb|AEE30099.1| 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|3822223|gb|AAC69851.1| branched-chain alpha keto-acid dehydrogenase E1 alpha subunit [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297845120|ref|XP_002890441.1| hypothetical protein ARALYDRAFT_313033 [Arabidopsis lyrata subsp. lyrata] gi|297336283|gb|EFH66700.1| hypothetical protein ARALYDRAFT_313033 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|356509346|ref|XP_003523411.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356515957|ref|XP_003526663.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|225431715|ref|XP_002265166.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial [Vitis vinifera] gi|296088533|emb|CBI37524.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|225457857|ref|XP_002268860.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial [Vitis vinifera] gi|302142724|emb|CBI19927.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297811017|ref|XP_002873392.1| hypothetical protein ARALYDRAFT_350155 [Arabidopsis lyrata subsp. lyrata] gi|297319229|gb|EFH49651.1| hypothetical protein ARALYDRAFT_350155 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|413916414|gb|AFW56346.1| hypothetical protein ZEAMMB73_816012 [Zea mays] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 324 | ||||||
| TAIR|locus:2027072 | 472 | AT1G21400 "AT1G21400" [Arabido | 0.962 | 0.661 | 0.646 | 7.5e-105 | |
| TAIR|locus:2184702 | 472 | AT5G09300 "AT5G09300" [Arabido | 0.728 | 0.5 | 0.758 | 1.1e-96 | |
| FB|FBgn0037709 | 439 | CG8199 [Drosophila melanogaste | 0.716 | 0.528 | 0.506 | 5.4e-63 | |
| ZFIN|ZDB-GENE-050522-376 | 446 | bckdha "branched chain keto ac | 0.719 | 0.522 | 0.502 | 1.4e-62 | |
| DICTYBASE|DDB_G0286335 | 441 | bkdA "branched-chain alpha-ket | 0.685 | 0.503 | 0.517 | 7.9e-62 | |
| UNIPROTKB|F5H5P2 | 479 | BCKDHA "Uncharacterized protei | 0.842 | 0.569 | 0.442 | 1.5e-60 | |
| WB|WBGene00012713 | 432 | Y39E4A.3 [Caenorhabditis elega | 0.700 | 0.525 | 0.504 | 1.5e-60 | |
| RGD|2196 | 441 | Bckdha "branched chain ketoaci | 0.719 | 0.528 | 0.480 | 1.9e-60 | |
| UNIPROTKB|B4DP47 | 448 | BCKDHA "2-oxoisovalerate dehyd | 0.719 | 0.520 | 0.484 | 2.4e-60 | |
| UNIPROTKB|P12694 | 445 | BCKDHA "2-oxoisovalerate dehyd | 0.719 | 0.523 | 0.484 | 2.4e-60 |
| TAIR|locus:2027072 AT1G21400 "AT1G21400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
Identities = 203/314 (64%), Positives = 234/314 (74%)
Query: 1 MAIWLTKSRAMAQCLRQRVGLLRILSGQSCSSPSTIFPLQQYNSPSLPSKTLFSPGRSES 60
MAIW +S+ + LR + L IL + S + Q +S + S F R ES
Sbjct: 1 MAIWFARSKTLVSSLRHNLNLSTILIKRDYSHRPIFYTTSQLSSTAYLSP--FGSLRHES 58
Query: 61 TVAANQXXXXXXXXXXXXHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIK 120
T Q Q LDFPGGKVGYTSEM+FIPESS +R+PC+RVLD++G +I
Sbjct: 59 TAVETQADHLVQQIDEVDAQELDFPGGKVGYTSEMKFIPESSSRRIPCYRVLDEDGRIIP 118
Query: 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSA 180
SDF VS+++AV+MY M TLQVMD + YEAQRQGR SFYLT++GEEAINI SAAALS
Sbjct: 119 DSDFIPVSEKLAVRMYEQMATLQVMDHIFYEAQRQGRISFYLTSVGEEAINIASAAALSP 178
Query: 181 DDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIA 240
DD +LPQYREPGVLLWRG+TL++FANQ F NKAD GKGRQMPIHYGS +LNY TISSPIA
Sbjct: 179 DDVVLPQYREPGVLLWRGFTLEEFANQCFGNKADYGKGRQMPIHYGSNRLNYFTISSPIA 238
Query: 241 TQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA 300
TQLPQA GV YSLKM+KK+AC V + GDGGTSEGDFHA LNFAAVMEAPVVFICRNNGWA
Sbjct: 239 TQLPQAAGVGYSLKMDKKNACTVTFIGDGGTSEGDFHAGLNFAAVMEAPVVFICRNNGWA 298
Query: 301 ISTNISEQFRSTAI 314
IST+ISEQFRS I
Sbjct: 299 ISTHISEQFRSDGI 312
|
|
| TAIR|locus:2184702 AT5G09300 "AT5G09300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0037709 CG8199 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-050522-376 bckdha "branched chain keto acid dehydrogenase E1, alpha polypeptide" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0286335 bkdA "branched-chain alpha-keto acid dehydrogenase E1 alpha chain" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F5H5P2 BCKDHA "Uncharacterized protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00012713 Y39E4A.3 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| RGD|2196 Bckdha "branched chain ketoacid dehydrogenase E1, alpha polypeptide" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B4DP47 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P12694 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.2.4 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 324 | |||
| cd02000 | 293 | cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph | 1e-84 | |
| COG1071 | 358 | COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena | 2e-72 | |
| TIGR03181 | 341 | TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E | 7e-71 | |
| pfam00676 | 303 | pfam00676, E1_dh, Dehydrogenase E1 component | 4e-59 | |
| TIGR03182 | 315 | TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E | 3e-30 | |
| PLN02374 | 433 | PLN02374, PLN02374, pyruvate dehydrogenase (acetyl | 1e-17 | |
| PLN02269 | 362 | PLN02269, PLN02269, Pyruvate dehydrogenase E1 comp | 1e-17 | |
| CHL00149 | 341 | CHL00149, odpA, pyruvate dehydrogenase E1 componen | 1e-13 | |
| cd02007 | 195 | cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) fam | 9e-06 | |
| cd00568 | 168 | cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) | 3e-05 | |
| TIGR00204 | 617 | TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate syn | 0.002 |
| >gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Score = 256 bits (657), Expect = 1e-84
Identities = 77/181 (42%), Positives = 109/181 (60%), Gaps = 1/181 (0%)
Query: 135 MYSHMVTLQVMDSVLYEAQRQGR-FSFYLTTIGEEAINIGSAAALSADDFILPQYREPGV 193
+Y MV ++ D L E RQG+ FY +IG+EA+ +G AAAL D++ P YR+ G
Sbjct: 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGH 60
Query: 194 LLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSL 253
L RG L++ ++F + KGR +H G K+ N+ + + Q+P A G A +L
Sbjct: 61 ALARGVDLKEMLAELFGKETGPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALAL 120
Query: 254 KMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTA 313
K +D AV + GDG T+EGDFH ALNFAA+ + PV+F+C NNG+AIST S Q T+
Sbjct: 121 KYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTSRQTAGTS 180
Query: 314 I 314
I
Sbjct: 181 I 181
|
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). Length = 293 |
| >gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
| >gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component | Back alignment and domain information |
|---|
| >gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
| >gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
| >gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit alpha | Back alignment and domain information |
|---|
| >gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
| >gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
| >gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 324 | |||
| KOG1182 | 432 | consensus Branched chain alpha-keto acid dehydroge | 100.0 | |
| COG1071 | 358 | AcoA Pyruvate/2-oxoglutarate dehydrogenase complex | 100.0 | |
| PLN02269 | 362 | Pyruvate dehydrogenase E1 component subunit alpha | 100.0 | |
| CHL00149 | 341 | odpA pyruvate dehydrogenase E1 component alpha sub | 100.0 | |
| TIGR03182 | 315 | PDH_E1_alph_y pyruvate dehydrogenase E1 component, | 100.0 | |
| PLN02374 | 433 | pyruvate dehydrogenase (acetyl-transferring) | 100.0 | |
| TIGR03181 | 341 | PDH_E1_alph_x pyruvate dehydrogenase E1 component, | 100.0 | |
| cd02000 | 293 | TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) | 100.0 | |
| PF00676 | 300 | E1_dh: Dehydrogenase E1 component; InterPro: IPR00 | 100.0 | |
| KOG0225 | 394 | consensus Pyruvate dehydrogenase E1, alpha subunit | 100.0 | |
| PRK09404 | 924 | sucA 2-oxoglutarate dehydrogenase E1 component; Re | 100.0 | |
| cd02016 | 265 | TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami | 100.0 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 99.95 | |
| TIGR00239 | 929 | 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon | 99.92 | |
| COG3959 | 243 | Transketolase, N-terminal subunit [Carbohydrate tr | 99.86 | |
| TIGR00232 | 653 | tktlase_bact transketolase, bacterial and yeast. T | 99.85 | |
| PRK12754 | 663 | transketolase; Reviewed | 99.84 | |
| PRK12753 | 663 | transketolase; Reviewed | 99.82 | |
| PLN02790 | 654 | transketolase | 99.82 | |
| cd02007 | 195 | TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s | 99.82 | |
| PTZ00089 | 661 | transketolase; Provisional | 99.8 | |
| TIGR00204 | 617 | dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s | 99.79 | |
| cd02011 | 227 | TPP_PK Thiamine pyrophosphate (TPP) family, Phosph | 99.79 | |
| PRK05444 | 580 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 99.75 | |
| cd02012 | 255 | TPP_TK Thiamine pyrophosphate (TPP) family, Transk | 99.75 | |
| PLN02582 | 677 | 1-deoxy-D-xylulose-5-phosphate synthase | 99.71 | |
| cd02017 | 386 | TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam | 99.71 | |
| PRK05899 | 624 | transketolase; Reviewed | 99.7 | |
| PF00456 | 332 | Transketolase_N: Transketolase, thiamine diphospha | 99.68 | |
| PRK11864 | 300 | 2-ketoisovalerate ferredoxin oxidoreductase subuni | 99.67 | |
| PRK12571 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 99.59 | |
| KOG0523 | 632 | consensus Transketolase [Carbohydrate transport an | 99.57 | |
| TIGR03186 | 889 | AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S | 99.54 | |
| TIGR00759 | 885 | aceE pyruvate dehydrogenase E1 component, homodime | 99.53 | |
| PLN02234 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase | 99.53 | |
| PRK13012 | 896 | 2-oxoacid dehydrogenase subunit E1; Provisional | 99.47 | |
| PRK09405 | 891 | aceE pyruvate dehydrogenase subunit E1; Reviewed | 99.42 | |
| COG0021 | 663 | TktA Transketolase [Carbohydrate transport and met | 99.23 | |
| PRK05261 | 785 | putative phosphoketolase; Provisional | 99.22 | |
| COG1154 | 627 | Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m | 99.05 | |
| cd00568 | 168 | TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa | 99.0 | |
| PF13292 | 270 | DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn | 99.0 | |
| PLN02225 | 701 | 1-deoxy-D-xylulose-5-phosphate synthase | 98.97 | |
| cd02002 | 178 | TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC | 98.82 | |
| cd02004 | 172 | TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam | 98.69 | |
| cd02014 | 178 | TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv | 98.53 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 98.47 | |
| cd03372 | 179 | TPP_ComE Thiamine pyrophosphate (TPP) family, ComE | 98.38 | |
| cd02005 | 183 | TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, | 98.24 | |
| cd02015 | 186 | TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet | 98.21 | |
| cd02013 | 196 | TPP_Xsc_like Thiamine pyrophosphate (TPP) family, | 98.17 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 98.05 | |
| PRK12270 | 1228 | kgd alpha-ketoglutarate decarboxylase; Reviewed | 98.03 | |
| cd02008 | 178 | TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, | 98.0 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 97.97 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 97.91 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 97.9 | |
| cd02001 | 157 | TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil | 97.88 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 97.86 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 97.86 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 97.86 | |
| TIGR03846 | 181 | sulfopy_beta sulfopyruvate decarboxylase, beta sub | 97.84 | |
| cd02006 | 202 | TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s | 97.84 | |
| PF02775 | 153 | TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter | 97.82 | |
| cd02003 | 205 | TPP_IolD Thiamine pyrophosphate (TPP) family, IolD | 97.81 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 97.78 | |
| cd02010 | 177 | TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto | 97.67 | |
| PRK06163 | 202 | hypothetical protein; Provisional | 97.67 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 97.67 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 97.66 | |
| cd03371 | 188 | TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp | 97.64 | |
| PRK11865 | 299 | pyruvate ferredoxin oxidoreductase subunit beta; P | 97.64 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 97.63 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 97.59 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 97.57 | |
| cd03375 | 193 | TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o | 97.53 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 97.52 | |
| cd03376 | 235 | TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam | 97.51 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 97.49 | |
| COG2609 | 887 | AceE Pyruvate dehydrogenase complex, dehydrogenase | 97.48 | |
| cd02009 | 175 | TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa | 97.44 | |
| PRK07586 | 514 | hypothetical protein; Validated | 97.41 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 97.41 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 97.39 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 97.35 | |
| TIGR03393 | 539 | indolpyr_decarb indolepyruvate decarboxylase, Erwi | 97.28 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 97.27 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 97.25 | |
| PRK05778 | 301 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 97.24 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 97.24 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 97.24 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 97.24 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 97.23 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 97.23 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 97.2 | |
| cd02018 | 237 | TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru | 97.2 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 97.2 | |
| PLN02573 | 578 | pyruvate decarboxylase | 97.2 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 97.19 | |
| PRK11867 | 286 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 97.17 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 97.16 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 97.15 | |
| PRK11869 | 280 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 97.12 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 97.11 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 97.11 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 97.09 | |
| COG3961 | 557 | Pyruvate decarboxylase and related thiamine pyroph | 97.09 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 97.07 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 97.07 | |
| PRK07449 | 568 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 | 97.07 | |
| TIGR02177 | 287 | PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta | 97.06 | |
| PLN02470 | 585 | acetolactate synthase | 97.06 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 97.03 | |
| PRK11866 | 279 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 97.03 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 97.02 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase | 96.99 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 96.99 | |
| PRK09628 | 277 | oorB 2-oxoglutarate-acceptor oxidoreductase subuni | 96.96 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 96.94 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 96.94 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 96.9 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 96.89 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 96.88 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate deca | 96.84 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 96.75 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 96.58 | |
| PF09364 | 379 | XFP_N: XFP N-terminal domain; InterPro: IPR018970 | 95.83 | |
| KOG1184 | 561 | consensus Thiamine pyrophosphate-requiring enzyme | 95.49 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 94.47 | |
| COG3957 | 793 | Phosphoketolase [Carbohydrate transport and metabo | 93.95 | |
| KOG0451 | 913 | consensus Predicted 2-oxoglutarate dehydrogenase, | 93.82 | |
| KOG1185 | 571 | consensus Thiamine pyrophosphate-requiring enzyme | 92.45 | |
| COG1013 | 294 | PorB Pyruvate:ferredoxin oxidoreductase and relate | 87.22 | |
| COG3960 | 592 | Glyoxylate carboligase [General function predictio | 82.79 | |
| COG1165 | 566 | MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car | 82.06 | |
| COG0567 | 906 | SucA 2-oxoglutarate dehydrogenase complex, dehydro | 81.97 |
| >KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-84 Score=615.96 Aligned_cols=237 Identities=62% Similarity=1.043 Sum_probs=233.2
Q ss_pred ccccCCCCccCccccccccCCCCCCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Q 020562 81 VLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSF 160 (324)
Q Consensus 81 ~~~f~~~~~~~~~~~~~~~~~~~~~~p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~f 160 (324)
..+|||+|+.||++|+|++++..+.||||||||++|.+++++++|.+++|..+|||++|+++.+||.++|+.||||||+|
T Consensus 37 ~~~fpg~ka~ft~kl~fI~~~d~~~iPiYRV~d~~G~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRiSF 116 (432)
T KOG1182|consen 37 YKDFPGAKAAFTSKLEFIQPSDTPRIPIYRVMDADGQIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRISF 116 (432)
T ss_pred hccCCCCccccccceeecCcccCCCCceEEEecCCCcccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchHHHHHHHHhccCCCCeEecCCCchhhHhhcCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCcc
Q 020562 161 YLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIA 240 (324)
Q Consensus 161 y~~~~GqEA~~VG~aaAL~~~D~v~~~YRe~g~~l~RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lG 240 (324)
||+++||||+.||+|+||.|+|.||+||||.||+||||++++++++|||||..|.+||||||+||+++++||+++++||.
T Consensus 117 YmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tisspla 196 (432)
T KOG1182|consen 117 YMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLA 196 (432)
T ss_pred EEeccchhhhhhhhhhhCCcccccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhHHHhhhhhcCCC-CEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccccccccccccCccHHHH
Q 020562 241 TQLPQAVGVAYSLKMEKKD-ACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITSF 317 (324)
Q Consensus 241 tqlp~AvG~A~A~k~~g~~-~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAIStP~~~Q~~~~~Ia~k 317 (324)
+|+|+|||+|||+|+++++ +|+|||||||++||||||+|||||++++|||||||+|||||||||+++||++|+|+.|
T Consensus 197 tqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~k 274 (432)
T KOG1182|consen 197 TQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVK 274 (432)
T ss_pred hccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEe
Confidence 9999999999999977665 8999999999999999999999999999999999999999999999999999999876
|
|
| >COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
| >PLN02269 Pyruvate dehydrogenase E1 component subunit alpha | Back alignment and domain information |
|---|
| >CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
| >TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
| >PLN02374 pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
| >TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
| >cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
| >PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex | Back alignment and domain information |
|---|
| >KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed | Back alignment and domain information |
|---|
| >cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) | Back alignment and domain information |
|---|
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
| >TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component | Back alignment and domain information |
|---|
| >COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR00232 tktlase_bact transketolase, bacterial and yeast | Back alignment and domain information |
|---|
| >PRK12754 transketolase; Reviewed | Back alignment and domain information |
|---|
| >PRK12753 transketolase; Reviewed | Back alignment and domain information |
|---|
| >PLN02790 transketolase | Back alignment and domain information |
|---|
| >cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
| >PTZ00089 transketolase; Provisional | Back alignment and domain information |
|---|
| >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
| >cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O | Back alignment and domain information |
|---|
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
| >cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
| >PLN02582 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
| >cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E | Back alignment and domain information |
|---|
| >PRK05899 transketolase; Reviewed | Back alignment and domain information |
|---|
| >PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2 | Back alignment and domain information |
|---|
| >PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
| >KOG0523 consensus Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase | Back alignment and domain information |
|---|
| >TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type | Back alignment and domain information |
|---|
| >PLN02234 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
| >PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional | Back alignment and domain information |
|---|
| >PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed | Back alignment and domain information |
|---|
| >COG0021 TktA Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PRK05261 putative phosphoketolase; Provisional | Back alignment and domain information |
|---|
| >COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] | Back alignment and domain information |
|---|
| >cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
| >PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B | Back alignment and domain information |
|---|
| >PLN02225 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
| >cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
| >cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) | Back alignment and domain information |
|---|
| >cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions | Back alignment and domain information |
|---|
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
| >cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) | Back alignment and domain information |
|---|
| >cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) | Back alignment and domain information |
|---|
| >cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS | Back alignment and domain information |
|---|
| >cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) | Back alignment and domain information |
|---|
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
| >cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit | Back alignment and domain information |
|---|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) | Back alignment and domain information |
|---|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit | Back alignment and domain information |
|---|
| >cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) | Back alignment and domain information |
|---|
| >PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
| >cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv | Back alignment and domain information |
|---|
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
| >cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation | Back alignment and domain information |
|---|
| >PRK06163 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
| >cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins | Back alignment and domain information |
|---|
| >PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor | Back alignment and domain information |
|---|
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
| >cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria | Back alignment and domain information |
|---|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] | Back alignment and domain information |
|---|
| >cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) | Back alignment and domain information |
|---|
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family | Back alignment and domain information |
|---|
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
| >PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated | Back alignment and domain information |
|---|
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
| >cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways | Back alignment and domain information |
|---|
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed | Back alignment and domain information |
|---|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated | Back alignment and domain information |
|---|
| >TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family | Back alignment and domain information |
|---|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
| >PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
| >PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed | Back alignment and domain information |
|---|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria | Back alignment and domain information |
|---|
| >KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
| >COG3957 Phosphoketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
| >COG3960 Glyoxylate carboligase [General function prediction only] | Back alignment and domain information |
|---|
| >COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 324 | ||||
| 1olu_A | 400 | Roles Of His291-Alpha And His146-Beta' In The Reduc | 3e-64 | ||
| 1dtw_A | 400 | Human Branched-Chain Alpha-Keto Acid Dehydrogenase | 3e-64 | ||
| 1x7y_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 3e-64 | ||
| 2j9f_A | 400 | Human Branched-Chain Alpha-Ketoacid Dehydrogenase- | 3e-64 | ||
| 1x80_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 3e-64 | ||
| 1v11_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 3e-64 | ||
| 2bff_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 3e-64 | ||
| 1x7w_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 3e-64 | ||
| 1x7x_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 3e-64 | ||
| 1v1m_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 3e-64 | ||
| 1x7z_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 3e-64 | ||
| 1v16_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 3e-64 | ||
| 2bfc_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 9e-64 | ||
| 2bfb_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 2e-63 | ||
| 2bfd_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 3e-63 | ||
| 2bfe_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 2e-62 | ||
| 1um9_A | 367 | Branched-chain 2-oxo Acid Dehydrogenase (e1) From T | 7e-36 | ||
| 2bp7_A | 410 | New Crystal Form Of The Pseudomonas Putida Branched | 1e-35 | ||
| 1qs0_A | 407 | Crystal Structure Of Pseudomonas Putida 2-Oxoisoval | 5e-33 | ||
| 3duf_A | 369 | Snapshots Of Catalysis In The E1 Subunit Of The Pyr | 4e-31 | ||
| 1w85_A | 368 | The Crystal Structure Of Pyruvate Dehydrogenase E1 | 4e-31 | ||
| 1w88_A | 368 | The Crystal Structure Of Pyruvate Dehydrogenase E1( | 2e-30 | ||
| 3dva_A | 369 | Snapshots Of Catalysis In The E1 Subunit Of The Pyr | 2e-30 | ||
| 3exe_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 4e-14 | ||
| 2ozl_A | 365 | Human Pyruvate Dehydrogenase S264e Variant Length = | 4e-14 | ||
| 3exf_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 8e-14 | ||
| 3exh_C | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 8e-14 | ||
| 3exi_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 1e-13 | ||
| 1ni4_A | 365 | Human Pyruvate Dehydrogenase Length = 365 | 4e-12 |
| >pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 400 | Back alignment and structure |
| >pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
| >pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 400 | Back alignment and structure |
| >pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
| >pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
| >pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
| >pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
| >pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
| >pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
| >pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
| >pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
| >pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
| >pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
| >pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
| >pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
| >pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 367 | Back alignment and structure |
| >pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 410 | Back alignment and structure |
| >pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 407 | Back alignment and structure |
| >pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 | Back alignment and structure |
| >pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 | Back alignment and structure |
| >pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n, E183q) Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 | Back alignment and structure |
| >pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 | Back alignment and structure |
| >pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
| >pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant Length = 365 | Back alignment and structure |
| >pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
| >pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
| >pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex With The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot Be Modeled Into The Electron Density Length = 382 | Back alignment and structure |
| >pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase Length = 365 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Length = 400 | Back alignment and structure |
|---|
Score = 355 bits (912), Expect = e-122
Identities = 112/232 (48%), Positives = 152/232 (65%)
Query: 83 DFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTL 142
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 8 QFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLL 67
Query: 143 QVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQ 202
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + Q RE GVL++R Y L+
Sbjct: 68 NTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLE 127
Query: 203 QFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACA 262
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K +
Sbjct: 128 LFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVV 187
Query: 263 VAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAI 314
+ Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R I
Sbjct: 188 ICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGI 239
|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Length = 407 | Back alignment and structure |
|---|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Length = 367 | Back alignment and structure |
|---|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Length = 368 | Back alignment and structure |
|---|
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 324 | |||
| 2bfd_A | 400 | 2-oxoisovalerate dehydrogenase alpha subunit; oxid | 100.0 | |
| 1qs0_A | 407 | 2-oxoisovalerate dehydrogenase alpha-subunit; hete | 100.0 | |
| 1w85_A | 368 | Pyruvate dehydrogenase E1 component, alpha subunit | 100.0 | |
| 2ozl_A | 365 | PDHE1-A type I, pyruvate dehydrogenase E1 componen | 100.0 | |
| 1umd_A | 367 | E1-alpha, 2-OXO acid dehydrogenase alpha subunit; | 100.0 | |
| 2jgd_A | 933 | 2-oxoglutarate dehydrogenase E1 component; flavopr | 100.0 | |
| 2yic_A | 868 | 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 | 100.0 | |
| 2xt6_A | 1113 | 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET | 100.0 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia | 99.91 | |
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, | 99.88 | |
| 3rim_A | 700 | Transketolase, TK; TPP, transferase; HET: TPP; 2.4 | 99.82 | |
| 1r9j_A | 673 | Transketolase; domains, EACH of the alpha/beta typ | 99.78 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 99.77 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: | 99.76 | |
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine py | 99.75 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, | 99.73 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, nation | 99.73 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calc | 99.72 | |
| 3uk1_A | 711 | Transketolase; structural genomics, seattle struct | 99.71 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 99.71 | |
| 3m49_A | 690 | Transketolase; alpha-beta-alpha sandwich, csgid, t | 99.69 | |
| 2qtc_A | 886 | Pyruvate dehydrogenase E1 component; thiamin dipho | 99.68 | |
| 3ahc_A | 845 | Phosphoketolase, xylulose 5-phosphate/fructose 6-p | 98.97 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 98.79 | |
| 2vk8_A | 563 | Pyruvate decarboxylase isozyme 1; asymmetric activ | 98.68 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 98.56 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 98.5 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 98.47 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 98.43 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 98.42 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 98.4 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 98.38 | |
| 2vbf_A | 570 | Branched-chain alpha-ketoacid decarboxylase; KDCA, | 98.35 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 98.35 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 98.34 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 98.3 | |
| 1ovm_A | 552 | Indole-3-pyruvate decarboxylase; thiamine diphosph | 98.3 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 98.22 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 98.18 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 98.07 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 98.06 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 98.03 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 98.01 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 97.77 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 97.58 |
| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-59 Score=458.24 Aligned_cols=242 Identities=46% Similarity=0.818 Sum_probs=232.9
Q ss_pred cccccCCCCccCccccccccCCCCCCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 020562 80 QVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159 (324)
Q Consensus 80 ~~~~f~~~~~~~~~~~~~~~~~~~~~~p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~ 159 (324)
+.++|||++++||++|+|+++.....+|+|||||+||+++++...+.+++|+++++|+.|+++|.||+++.++|+||||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~ 84 (400)
T 2bfd_A 5 DKPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRIS 84 (400)
T ss_dssp -CCCCTTCCCCCCSSCCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred cCCCCCCCCcccccceeeccCcccCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 47899999999999999999988889999999999999998866789999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHHHhccCCCCeEecCCCchhhHhhcCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCc
Q 020562 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPI 239 (324)
Q Consensus 160 fy~~~~GqEA~~VG~aaAL~~~D~v~~~YRe~g~~l~RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~l 239 (324)
||+++.||||++||++++|+++|+|+++||+|+++++||+++.++|.+++|+.+|+++|+++++|++.++.++++.+++|
T Consensus 85 ~~~~~~GqEa~~vg~~~al~~~D~v~~~yR~~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~l 164 (400)
T 2bfd_A 85 FYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPL 164 (400)
T ss_dssp CCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSST
T ss_pred eeecCCChHHHHHHHHHhcCCCCEEEecCcCHHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccccccccccccCccHHHHHH
Q 020562 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITSFFF 319 (324)
Q Consensus 240 Gtqlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~ 319 (324)
|.++|+|+|+|+|.|+++++.+|+|++|||++++|.|||+||+|+.|++||||||+||+|+|++|+..++...+++.++.
T Consensus 165 G~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~ 244 (400)
T 2bfd_A 165 ATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGP 244 (400)
T ss_dssp TTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTG
T ss_pred cccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888888877
Q ss_pred hh
Q 020562 320 KF 321 (324)
Q Consensus 320 ~~ 321 (324)
++
T Consensus 245 a~ 246 (400)
T 2bfd_A 245 GY 246 (400)
T ss_dssp GG
T ss_pred Hc
Confidence 64
|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A | Back alignment and structure |
|---|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* | Back alignment and structure |
|---|
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* | Back alignment and structure |
|---|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* | Back alignment and structure |
|---|
| >2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* | Back alignment and structure |
|---|
| >2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* | Back alignment and structure |
|---|
| >2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* | Back alignment and structure |
|---|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* | Back alignment and structure |
|---|
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} | Back alignment and structure |
|---|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* | Back alignment and structure |
|---|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* | Back alignment and structure |
|---|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* | Back alignment and structure |
|---|
| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* | Back alignment and structure |
|---|
| >2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* | Back alignment and structure |
|---|
| >3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* | Back alignment and structure |
|---|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* | Back alignment and structure |
|---|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* | Back alignment and structure |
|---|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 | Back alignment and structure |
|---|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 324 | ||||
| d2bfda1 | 395 | c.36.1.11 (A:6-400) Branched-chain alpha-keto acid | 2e-53 | |
| d1w85a_ | 365 | c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, Pd | 3e-42 | |
| d1qs0a_ | 407 | c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B | 2e-40 | |
| d2ozla1 | 361 | c.36.1.11 (A:1-361) E1-beta subunit of pyruvate de | 5e-37 | |
| d1umda_ | 362 | c.36.1.11 (A:) Branched-chain alpha-keto acid dehy | 7e-36 | |
| d1itza1 | 338 | c.36.1.10 (A:10-347) Transketolase (TK), PP module | 0.002 |
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Score = 178 bits (451), Expect = 2e-53
Identities = 111/228 (48%), Positives = 151/228 (66%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 4 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 63
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + Q RE GVL++R Y L+
Sbjct: 64 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLEL 123
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 124 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 183
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRS 311
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R
Sbjct: 184 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRG 231
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Length = 365 | Back information, alignment and structure |
|---|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Length = 407 | Back information, alignment and structure |
|---|
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Length = 361 | Back information, alignment and structure |
|---|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Length = 362 | Back information, alignment and structure |
|---|
| >d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} Length = 338 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 324 | |||
| d2bfda1 | 395 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d1qs0a_ | 407 | 2-oxoisovalerate dehydrogenase (E1B), PP module {P | 100.0 | |
| d1umda_ | 362 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d1w85a_ | 365 | Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st | 100.0 | |
| d2ozla1 | 361 | E1-beta subunit of pyruvate dehydrogenase (PP modu | 100.0 | |
| d2r8oa2 | 331 | Transketolase (TK), PP module {Escherichia coli [T | 99.69 | |
| d1gpua1 | 335 | Transketolase (TK), PP module {Baker's yeast (Sacc | 99.68 | |
| d1r9ja2 | 336 | Transketolase (TK), PP module {Leishmania mexicana | 99.65 | |
| d1itza1 | 338 | Transketolase (TK), PP module {Maize (Zea mays) [T | 99.63 | |
| d2ieaa2 | 415 | Pyruvate dehydrogenase E1 component, PP module {Es | 99.31 | |
| d1pvda3 | 196 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 98.3 | |
| d1q6za3 | 183 | Benzoylformate decarboxylase {Pseudomonas putida [ | 98.03 | |
| d2djia3 | 229 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 97.98 | |
| d1ovma3 | 196 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 97.98 | |
| d1zpda3 | 204 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 97.71 | |
| d2ihta3 | 198 | Carboxyethylarginine synthase {Streptomyces clavul | 97.57 | |
| d2ez9a3 | 228 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 97.52 | |
| d1ozha3 | 192 | Catabolic acetolactate synthase {Klebsiella pneumo | 97.41 | |
| d1ybha3 | 208 | Acetohydroxyacid synthase catalytic subunit {Thale | 97.16 | |
| d1t9ba3 | 227 | Acetohydroxyacid synthase catalytic subunit {Baker | 97.0 | |
| d2ji7a3 | 183 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 96.88 |
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.5e-70 Score=534.69 Aligned_cols=240 Identities=47% Similarity=0.826 Sum_probs=234.0
Q ss_pred cccCCCCccCccccccccCCCCCCCCceEEeCCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Q 020562 82 LDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFY 161 (324)
Q Consensus 82 ~~f~~~~~~~~~~~~~~~~~~~~~~p~~rvld~~G~~~~~~~~~~ls~e~ll~lYr~Mv~~R~~D~~~~~lqRqGri~fy 161 (324)
..|||++++|+.+++|..+.....+|+|||||+||+++++...|.+|+|+++++||.|+++|.||+++.++||||+|+||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~ld~~g~~~~~~~~~~ls~e~l~~~Yr~M~~~R~~e~~~~~l~~~G~i~~~ 81 (395)
T d2bfda1 2 PQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFY 81 (395)
T ss_dssp CCCTTCCCCCCSSCCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCC
T ss_pred CCCCCCCCccccccccCCCccCCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 36899999999999999998888999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHhccCCCCeEecCCCchhhHhhcCCCHHHHHHHHhhCcCCCCCCCCCCcccCCCCCccccccCCccC
Q 020562 162 LTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIAT 241 (324)
Q Consensus 162 ~~~~GqEA~~VG~aaAL~~~D~v~~~YRe~g~~l~RG~~l~~i~~q~~g~~~d~~kGr~mp~H~~~~~~~~~~~ss~lGt 241 (324)
+++.||||++||++++|+++||+|++||+|+++|+||+|++++|+|++|+.+|+++||+|++|+++++.|+++.+++||+
T Consensus 82 ~~~~GqEA~~vg~~~al~~~D~~~~~yR~h~~~la~G~~~~~~~ael~g~~~g~~~Grggs~H~~~~~~~~~~~~~ivg~ 161 (395)
T d2bfda1 82 MTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLAT 161 (395)
T ss_dssp CCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTT
T ss_pred cCCCChHHHHHHHHHHcCCCCeeccccchhHhhhhhhCCHHHHHHHHhhcccCccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHHhhhhhcCCCCEEEEEeCCCCCccchHHHHHHHHHHcCCCEEEEEecCCccccccccccccCccHHHHHHhh
Q 020562 242 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAITSFFFKF 321 (324)
Q Consensus 242 qlp~AvG~A~A~k~~g~~~Vvv~~~GDGatSeGdfhEALNfAa~~~lPvIFv~eNNgyAIStP~~~Q~~~~~Ia~k~~~~ 321 (324)
|+|+|+|+|+|.|++++++|++|+|||||++||+||||||||++|+|||||||+||+||||||+++|++.++|+.+...|
T Consensus 162 ~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~yaist~~~~~~~~~~i~~ra~~~ 241 (395)
T d2bfda1 162 QIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 241 (395)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGG
T ss_pred cccHHHHHHHHhhhcCcccccccccCCCCccchhHHHHHHHHhhcCCceEEEEEecccccccccchhhcchhHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887654
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
| >d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
| >d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
| >d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
| >d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
| >d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
| >d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
| >d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
| >d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|